Query 003296
Match_columns 833
No_of_seqs 907 out of 5084
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 20:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-59 6.1E-64 564.3 41.0 467 5-474 197-748 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-56 6.9E-61 537.8 35.4 442 7-452 177-699 (768)
3 4gt4_A Tyrosine-protein kinase 100.0 2.4E-57 8.2E-62 479.6 16.1 257 556-832 27-304 (308)
4 3omv_A RAF proto-oncogene seri 100.0 2.4E-57 8.4E-62 477.0 15.9 259 556-832 37-298 (307)
5 4aoj_A High affinity nerve gro 100.0 4.5E-57 1.6E-61 482.1 17.3 256 556-832 42-317 (329)
6 4asz_A BDNF/NT-3 growth factor 100.0 1.9E-57 6.6E-62 478.2 12.4 257 555-832 13-287 (299)
7 4aw0_A HPDK1, 3-phosphoinositi 100.0 6.4E-56 2.2E-60 464.6 15.5 251 555-826 32-283 (311)
8 4fih_A Serine/threonine-protei 100.0 1.5E-55 5.1E-60 469.0 17.3 250 555-828 74-324 (346)
9 4b9d_A Serine/threonine-protei 100.0 4E-56 1.4E-60 474.2 11.8 253 555-828 24-277 (350)
10 3fpq_A Serine/threonine-protei 100.0 3.4E-55 1.2E-59 457.4 16.5 247 558-828 29-283 (290)
11 4g3f_A NF-kappa-beta-inducing 100.0 2.4E-55 8.2E-60 466.1 12.7 251 555-831 58-313 (336)
12 3hyh_A Carbon catabolite-derep 100.0 3.3E-54 1.1E-58 445.8 17.3 249 555-828 13-263 (275)
13 3t6q_A CD180 antigen; protein- 100.0 9.9E-52 3.4E-56 485.7 39.7 457 8-467 33-561 (606)
14 4fie_A Serine/threonine-protei 100.0 3E-54 1E-58 470.3 16.8 250 555-828 151-401 (423)
15 4ase_A Vascular endothelial gr 100.0 1.2E-54 4.2E-59 466.9 11.4 259 555-832 64-345 (353)
16 3hmm_A TGF-beta receptor type- 100.0 1.4E-53 4.6E-58 452.4 19.1 262 556-832 4-295 (303)
17 3t6q_A CD180 antigen; protein- 100.0 1.4E-51 4.6E-56 484.6 36.9 446 3-450 52-564 (606)
18 3ubd_A Ribosomal protein S6 ki 100.0 4E-54 1.4E-58 451.4 12.4 250 555-828 24-282 (304)
19 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-50 1.3E-54 478.6 42.0 463 8-470 25-626 (680)
20 4g31_A Eukaryotic translation 100.0 1.2E-52 3.9E-57 442.8 16.5 253 554-828 4-280 (299)
21 3j0a_A TOLL-like receptor 5; m 100.0 6.5E-50 2.2E-54 486.1 36.5 452 8-467 24-561 (844)
22 3vq2_A TLR4, TOLL-like recepto 100.0 7.6E-50 2.6E-54 469.7 35.4 433 8-450 32-538 (606)
23 1ziw_A TOLL-like receptor 3; i 100.0 8.6E-49 3E-53 467.0 39.1 447 4-451 45-627 (680)
24 3vq2_A TLR4, TOLL-like recepto 100.0 1E-48 3.5E-53 460.0 36.6 436 4-451 7-515 (606)
25 2z63_A TOLL-like receptor 4, v 100.0 1.6E-48 5.5E-53 455.1 33.5 437 8-452 28-537 (570)
26 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-48 5.4E-53 474.0 32.8 437 3-450 43-564 (844)
27 4b99_A Mitogen-activated prote 100.0 4.7E-50 1.6E-54 439.0 16.3 266 555-828 54-345 (398)
28 4f9c_A Cell division cycle 7-r 100.0 5.7E-49 2E-53 426.0 16.0 262 553-828 19-353 (361)
29 3v5w_A G-protein coupled recep 100.0 3E-49 1E-53 449.3 13.8 250 555-828 189-450 (689)
30 2z63_A TOLL-like receptor 4, v 100.0 3.6E-46 1.2E-50 435.2 38.7 438 3-451 2-512 (570)
31 4eco_A Uncharacterized protein 100.0 6.6E-47 2.3E-51 444.6 26.9 352 87-449 192-603 (636)
32 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-47 1.2E-51 438.2 23.3 427 11-450 3-485 (520)
33 3uto_A Twitchin; kinase, muscl 100.0 3.1E-48 1.1E-52 445.9 14.3 252 555-828 157-411 (573)
34 2z81_A CD282 antigen, TOLL-lik 100.0 3.7E-46 1.3E-50 433.0 27.3 433 8-450 26-490 (549)
35 4ecn_A Leucine-rich repeat pro 100.0 2.7E-45 9.1E-50 437.5 28.9 359 64-450 435-844 (876)
36 2qkw_B Protein kinase; three-h 100.0 1.5E-45 5E-50 397.1 21.7 271 552-832 36-313 (321)
37 3uim_A Brassinosteroid insensi 100.0 1.8E-45 6.2E-50 397.4 21.5 278 547-832 23-309 (326)
38 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-43 5.8E-48 418.2 36.8 434 10-451 33-560 (635)
39 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-44 5E-49 420.1 27.1 436 3-450 26-514 (562)
40 4eco_A Uncharacterized protein 100.0 1.3E-44 4.4E-49 425.2 26.6 407 8-425 81-603 (636)
41 4ecn_A Leucine-rich repeat pro 100.0 1.4E-44 4.7E-49 431.3 25.6 406 8-446 323-864 (876)
42 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-44 6.4E-49 418.6 25.3 440 3-451 45-515 (549)
43 3fxz_A Serine/threonine-protei 100.0 6.2E-45 2.1E-49 387.2 19.5 250 555-828 20-270 (297)
44 2psq_A Fibroblast growth facto 100.0 8.3E-45 2.9E-49 398.2 18.6 258 555-832 81-362 (370)
45 3soc_A Activin receptor type-2 100.0 8.8E-45 3E-49 390.9 17.7 259 555-832 24-316 (322)
46 2nru_A Interleukin-1 receptor- 100.0 4.7E-44 1.6E-48 382.8 23.0 278 547-833 18-305 (307)
47 1o6l_A RAC-beta serine/threoni 100.0 3.2E-44 1.1E-48 387.4 20.6 251 555-828 5-261 (337)
48 2yab_A Death-associated protei 100.0 1.2E-44 4.1E-49 394.3 17.4 256 554-828 11-273 (361)
49 3zgw_A Maternal embryonic leuc 100.0 1.1E-44 3.9E-49 391.9 16.0 251 554-828 9-261 (347)
50 3fe3_A MAP/microtubule affinit 100.0 1.3E-44 4.4E-49 389.4 16.3 249 555-828 15-265 (328)
51 3p86_A Serine/threonine-protei 100.0 1.3E-44 4.6E-49 386.6 16.2 258 554-832 36-296 (309)
52 3s95_A LIMK-1, LIM domain kina 100.0 9.6E-45 3.3E-49 388.7 13.5 259 555-833 10-281 (310)
53 1tki_A Titin; serine kinase, m 100.0 2E-44 7E-49 387.3 15.1 251 555-828 5-258 (321)
54 2y0a_A Death-associated protei 100.0 4E-44 1.4E-48 386.2 17.4 257 553-828 9-272 (326)
55 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-43 9.6E-48 405.7 25.3 405 8-426 21-485 (520)
56 1fot_A TPK1 delta, CAMP-depend 100.0 1.4E-43 4.6E-48 379.7 21.0 248 555-828 6-259 (318)
57 2c30_A Serine/threonine-protei 100.0 1.4E-43 4.7E-48 381.1 20.6 248 557-828 47-295 (321)
58 4eqm_A Protein kinase; transfe 100.0 3.9E-44 1.3E-48 380.5 16.1 261 555-832 11-273 (294)
59 3cbl_A C-FES, proto-oncogene t 100.0 1.3E-44 4.5E-49 398.1 12.5 258 555-833 114-373 (377)
60 3v47_A TOLL-like receptor 5B a 100.0 1.6E-42 5.6E-47 392.5 29.8 370 10-381 12-413 (455)
61 3txo_A PKC-L, NPKC-ETA, protei 100.0 2.5E-44 8.7E-49 390.7 14.2 252 554-828 22-281 (353)
62 3kul_A Ephrin type-A receptor 100.0 6.3E-44 2.2E-48 384.5 17.0 257 555-832 49-311 (325)
63 4dc2_A Protein kinase C IOTA t 100.0 2.1E-44 7.2E-49 395.7 13.5 253 555-828 52-319 (396)
64 4fr4_A YANK1, serine/threonine 100.0 4.3E-44 1.5E-48 391.9 15.9 250 555-827 15-271 (384)
65 3soa_A Calcium/calmodulin-depe 100.0 3.5E-44 1.2E-48 400.9 15.3 257 552-828 8-268 (444)
66 3h4j_B AMPK kdaid, SNF1-like p 100.0 2.4E-44 8.3E-49 387.8 13.5 249 555-828 9-259 (336)
67 3c0i_A Peripheral plasma membr 100.0 5.7E-44 1.9E-48 389.0 16.6 259 553-828 22-287 (351)
68 2bdw_A Hypothetical protein K1 100.0 3.2E-44 1.1E-48 392.1 14.5 256 552-828 26-285 (362)
69 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.7E-43 5.7E-48 370.7 19.2 255 555-833 8-263 (268)
70 3tki_A Serine/threonine-protei 100.0 3.5E-44 1.2E-48 386.0 13.9 254 555-828 7-262 (323)
71 3v8s_A RHO-associated protein 100.0 1.4E-44 4.7E-49 399.4 10.4 256 554-828 68-330 (410)
72 2qol_A Ephrin receptor; recept 100.0 8.3E-44 2.9E-48 390.5 16.4 257 555-832 45-307 (373)
73 3niz_A Rhodanese family protei 100.0 1E-43 3.5E-48 380.5 16.7 265 555-828 21-301 (311)
74 1xjd_A Protein kinase C, theta 100.0 6E-44 2E-48 386.3 14.7 251 554-827 16-269 (345)
75 1rdq_E PKA C-alpha, CAMP-depen 100.0 2.4E-43 8E-48 382.9 19.1 248 555-828 41-294 (350)
76 3vhe_A Vascular endothelial gr 100.0 2.5E-44 8.5E-49 394.1 11.2 261 553-832 20-353 (359)
77 4hcu_A Tyrosine-protein kinase 100.0 1.1E-43 3.6E-48 372.4 15.4 254 555-832 10-264 (269)
78 4aw2_A Serine/threonine-protei 100.0 1.3E-43 4.6E-48 394.5 17.0 260 553-828 72-339 (437)
79 3l9p_A Anaplastic lymphoma kin 100.0 4.4E-44 1.5E-48 392.3 12.1 258 555-832 71-343 (367)
80 3poz_A Epidermal growth factor 100.0 5.5E-44 1.9E-48 385.6 12.3 256 555-832 15-276 (327)
81 3q4u_A Activin receptor type-1 100.0 6.5E-43 2.2E-47 372.9 20.1 262 554-832 7-300 (301)
82 2vd5_A DMPK protein; serine/th 100.0 2E-43 6.8E-48 390.4 16.5 258 554-828 60-328 (412)
83 3tt0_A Basic fibroblast growth 100.0 2.2E-43 7.7E-48 389.2 16.9 258 555-832 69-350 (382)
84 4euu_A Serine/threonine-protei 100.0 1.2E-42 4E-47 374.1 22.0 268 555-831 9-306 (319)
85 2i0e_A Protein kinase C-beta I 100.0 2.8E-43 9.7E-48 382.2 17.1 252 554-828 19-277 (353)
86 3lb7_A RAF proto-oncogene seri 100.0 2.7E-43 9.4E-48 376.3 16.7 260 555-832 36-298 (307)
87 3dtc_A Mitogen-activated prote 100.0 1.6E-43 5.3E-48 371.6 14.2 257 555-832 7-271 (271)
88 3qd2_B Eukaryotic translation 100.0 2.6E-43 8.9E-48 381.5 16.3 254 553-828 4-326 (332)
89 2ivs_A Proto-oncogene tyrosine 100.0 2.6E-43 8.8E-48 378.4 15.6 258 555-832 23-309 (314)
90 2acx_A G protein-coupled recep 100.0 1.2E-43 4.3E-48 403.6 13.7 253 555-828 184-445 (576)
91 1luf_A Muscle-specific tyrosin 100.0 1.7E-43 6E-48 384.8 14.3 260 554-833 46-334 (343)
92 1ob3_A PFPK5, cell division co 100.0 2.2E-43 7.5E-48 373.9 14.6 264 556-828 3-281 (288)
93 3a8x_A Protein kinase C IOTA t 100.0 5.3E-43 1.8E-47 379.6 17.9 253 555-828 9-276 (345)
94 2x4f_A Myosin light chain kina 100.0 1.4E-43 4.8E-48 388.4 13.5 247 560-828 94-343 (373)
95 1opk_A P150, C-ABL, proto-onco 100.0 1.9E-43 6.5E-48 402.2 14.9 255 555-832 220-476 (495)
96 3a62_A Ribosomal protein S6 ki 100.0 4.4E-43 1.5E-47 378.2 16.8 252 555-828 17-277 (327)
97 2y94_A 5'-AMP-activated protei 100.0 1.1E-42 3.9E-47 391.0 20.8 249 556-828 17-267 (476)
98 2w4o_A Calcium/calmodulin-depe 100.0 4.9E-43 1.7E-47 381.2 17.2 251 554-828 52-306 (349)
99 2zv2_A Calcium/calmodulin-depe 100.0 6E-43 2E-47 372.5 17.3 253 555-828 13-293 (298)
100 1kob_A Twitchin; kinase, intra 100.0 5.4E-43 1.8E-47 384.7 17.3 252 555-828 51-305 (387)
101 2pmi_A Negative RE, cyclin-dep 100.0 5.1E-43 1.7E-47 376.2 16.8 266 554-828 4-294 (317)
102 3kmu_A ILK, integrin-linked ki 100.0 3.1E-43 1E-47 369.2 14.5 253 555-833 10-269 (271)
103 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-41 9.2E-46 399.3 32.8 435 8-449 52-583 (635)
104 1k9a_A Carboxyl-terminal SRC k 100.0 4.2E-43 1.4E-47 395.0 16.0 249 555-832 193-443 (450)
105 3o0g_A Cell division protein k 100.0 4.5E-43 1.5E-47 372.3 15.2 264 556-828 3-283 (292)
106 1rjb_A FL cytokine receptor; k 100.0 4E-43 1.4E-47 382.1 15.1 260 554-832 44-332 (344)
107 4f0f_A Serine/threonine-protei 100.0 1.5E-42 5.1E-47 367.4 19.0 255 555-832 19-287 (287)
108 1qcf_A Haematopoetic cell kina 100.0 2.1E-43 7E-48 398.2 13.1 255 554-832 187-442 (454)
109 3kn6_A Ribosomal protein S6 ki 100.0 2.9E-43 1E-47 379.1 13.3 245 560-828 16-271 (325)
110 3gen_A Tyrosine-protein kinase 100.0 8E-43 2.7E-47 368.6 16.3 254 555-832 24-278 (283)
111 2r5t_A Serine/threonine-protei 100.0 5.8E-43 2E-47 382.5 15.6 250 555-827 38-289 (373)
112 2a2a_A Death-associated protei 100.0 1.1E-42 3.8E-47 374.5 17.4 257 553-828 10-273 (321)
113 2eva_A TAK1 kinase - TAB1 chim 100.0 1.1E-42 3.6E-47 372.0 17.1 252 555-832 8-261 (307)
114 3kex_A Receptor tyrosine-prote 100.0 7.1E-43 2.4E-47 376.6 15.9 256 555-832 13-274 (325)
115 1t46_A HOMO sapiens V-KIT hard 100.0 3.9E-43 1.3E-47 376.8 13.7 259 555-832 23-305 (313)
116 3gni_B Strad alpha; kinase fol 100.0 7.9E-43 2.7E-47 386.2 16.3 266 555-828 25-334 (389)
117 3ugc_A Tyrosine-protein kinase 100.0 6.1E-44 2.1E-48 379.6 6.9 267 555-833 10-290 (295)
118 1nxk_A MAP kinase-activated pr 100.0 5.4E-43 1.9E-47 387.6 14.7 245 556-828 62-322 (400)
119 4ejn_A RAC-alpha serine/threon 100.0 4.5E-43 1.6E-47 394.9 14.1 251 555-828 148-405 (446)
120 3c4z_A Rhodopsin kinase; Ser/T 100.0 5.7E-43 2E-47 397.6 15.0 254 555-828 185-449 (543)
121 3qup_A Tyrosine-protein kinase 100.0 6.9E-43 2.4E-47 376.6 14.8 260 554-832 22-296 (323)
122 3g33_A Cell division protein k 100.0 1E-42 3.6E-47 372.5 16.0 270 552-828 6-297 (308)
123 3fdn_A Serine/threonine-protei 100.0 2.8E-42 9.5E-47 363.7 18.8 249 555-828 9-258 (279)
124 3ttj_A Mitogen-activated prote 100.0 1.4E-42 5E-47 391.1 17.7 261 555-828 62-356 (464)
125 3cok_A Serine/threonine-protei 100.0 1.2E-42 4E-47 366.4 15.8 252 555-828 11-263 (278)
126 2pvf_A Fibroblast growth facto 100.0 1.4E-42 4.7E-47 376.0 16.6 258 555-832 35-316 (334)
127 3f3z_A Calcium/calmodulin-depe 100.0 1.9E-42 6.4E-47 364.6 17.0 252 553-828 7-262 (277)
128 2qr7_A Ribosomal protein S6 ki 100.0 3.7E-43 1.3E-47 380.4 11.8 252 552-828 19-278 (342)
129 2eue_A Carbon catabolite derep 100.0 2.1E-42 7.1E-47 363.8 17.1 249 555-828 13-263 (275)
130 1mp8_A Focal adhesion kinase 1 100.0 1E-42 3.4E-47 367.5 14.6 255 555-832 15-274 (281)
131 2izr_A Casein kinase I isoform 100.0 6.4E-43 2.2E-47 377.9 13.3 257 555-832 9-279 (330)
132 3i6u_A CDS1, serine/threonine- 100.0 9.3E-43 3.2E-47 388.4 15.1 258 552-828 132-400 (419)
133 3hko_A Calcium/calmodulin-depe 100.0 8.6E-43 2.9E-47 379.6 14.4 263 552-828 23-331 (345)
134 3dls_A PAS domain-containing s 100.0 1.4E-42 5E-47 375.2 15.9 248 552-828 21-275 (335)
135 1u5q_A Serine/threonine protei 100.0 8E-43 2.7E-47 378.9 13.9 250 554-828 53-306 (348)
136 3p1a_A MYT1 kinase, membrane-a 100.0 9.8E-43 3.4E-47 372.9 14.4 249 553-828 55-305 (311)
137 2zmd_A Dual specificity protei 100.0 1.8E-42 6.1E-47 382.3 16.7 252 556-828 57-321 (390)
138 3ork_A Serine/threonine protei 100.0 3.4E-43 1.2E-47 376.7 10.3 257 555-828 12-274 (311)
139 3oz6_A Mitogen-activated prote 100.0 1.6E-42 5.5E-47 383.5 15.9 268 552-828 6-329 (388)
140 3op5_A Serine/threonine-protei 100.0 9E-43 3.1E-47 382.0 13.8 269 554-832 34-327 (364)
141 3dbq_A Dual specificity protei 100.0 1.8E-42 6E-47 376.4 15.5 253 555-828 9-274 (343)
142 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1E-42 3.5E-47 392.0 14.1 254 555-832 184-438 (452)
143 3llt_A Serine/threonine kinase 100.0 1.9E-42 6.6E-47 379.1 15.4 261 554-828 34-356 (360)
144 3og7_A AKAP9-BRAF fusion prote 100.0 1.5E-42 5.2E-47 367.6 13.8 260 555-832 24-286 (289)
145 3uc3_A Serine/threonine-protei 100.0 2.1E-42 7.2E-47 377.8 15.2 249 555-828 20-275 (361)
146 2h34_A Serine/threonine-protei 100.0 1.7E-42 5.7E-47 370.9 13.8 260 554-832 33-294 (309)
147 3kk8_A Calcium/calmodulin depe 100.0 1.7E-42 5.9E-47 366.3 13.8 254 554-828 5-262 (284)
148 2yex_A Serine/threonine-protei 100.0 6E-42 2E-46 360.5 17.6 256 553-828 5-262 (276)
149 1csn_A Casein kinase-1; phosph 100.0 4.4E-42 1.5E-46 365.9 16.7 258 555-832 10-281 (298)
150 3lzb_A Epidermal growth factor 100.0 1.4E-42 4.8E-47 374.3 12.9 256 555-832 15-276 (327)
151 4e5w_A Tyrosine-protein kinase 100.0 1.3E-42 4.5E-47 370.7 12.3 267 555-832 21-300 (302)
152 4eut_A Serine/threonine-protei 100.0 7.4E-42 2.5E-46 378.8 18.7 269 555-832 9-307 (396)
153 3lm5_A Serine/threonine-protei 100.0 5.8E-42 2E-46 369.7 17.4 258 552-828 25-288 (327)
154 3t9t_A Tyrosine-protein kinase 100.0 2.9E-42 9.8E-47 361.0 14.5 254 555-832 8-262 (267)
155 3bhy_A Death-associated protei 100.0 4.6E-42 1.6E-46 362.8 16.2 256 554-828 4-266 (283)
156 3nyv_A Calmodulin-domain prote 100.0 1.5E-42 5.1E-47 395.3 13.3 255 553-828 24-282 (484)
157 3gxj_A TGF-beta receptor type- 100.0 4.6E-43 1.6E-47 374.4 8.5 261 555-833 3-296 (303)
158 3is5_A Calcium-dependent prote 100.0 2E-42 6.7E-47 365.9 13.1 254 553-828 20-279 (285)
159 3mwu_A Calmodulin-domain prote 100.0 4.5E-42 1.5E-46 391.2 17.0 255 552-828 19-277 (486)
160 3mtl_A Cell division protein k 100.0 1.1E-42 3.8E-47 374.8 11.3 263 556-828 3-282 (324)
161 3mdy_A Bone morphogenetic prot 100.0 2.3E-41 8E-46 367.0 21.7 264 552-832 34-329 (337)
162 2y7j_A Phosphorylase B kinase 100.0 4.7E-42 1.6E-46 375.9 16.0 258 552-828 91-360 (365)
163 4fvq_A Tyrosine-protein kinase 100.0 3.1E-42 1E-46 365.4 14.1 249 555-832 8-273 (289)
164 2xir_A Vascular endothelial gr 100.0 1.2E-42 4.1E-47 373.6 10.9 260 554-832 26-308 (316)
165 3c1x_A Hepatocyte growth facto 100.0 2.3E-42 7.7E-47 378.6 13.3 255 557-832 91-353 (373)
166 2vgo_A Serine/threonine-protei 100.0 1.4E-41 4.7E-46 359.3 18.9 249 555-828 14-263 (284)
167 4agu_A Cyclin-dependent kinase 100.0 3.2E-42 1.1E-46 369.3 14.1 265 555-828 3-285 (311)
168 1vzo_A Ribosomal protein S6 ki 100.0 6.8E-43 2.3E-47 381.2 8.9 255 555-829 54-323 (355)
169 1qpc_A LCK kinase; alpha beta 100.0 5.2E-42 1.8E-46 361.6 15.3 254 555-832 13-267 (279)
170 1p4o_A Insulin-like growth fac 100.0 2E-42 7E-47 372.8 12.4 260 553-832 23-297 (322)
171 2a19_B Interferon-induced, dou 100.0 3.4E-42 1.2E-46 363.9 13.8 249 552-833 8-273 (284)
172 3kfa_A Tyrosine-protein kinase 100.0 1.7E-42 5.7E-47 367.2 11.4 256 554-832 12-269 (288)
173 2wqm_A Serine/threonine-protei 100.0 6.2E-42 2.1E-46 366.9 15.9 260 555-832 32-295 (310)
174 3lij_A Calcium/calmodulin depe 100.0 6E-42 2.1E-46 390.8 16.7 254 553-828 35-292 (494)
175 3v47_A TOLL-like receptor 5B a 100.0 1.2E-40 4.2E-45 377.1 27.2 348 8-356 30-412 (455)
176 1cm8_A Phosphorylated MAP kina 100.0 5.7E-42 2E-46 375.2 15.7 260 555-828 25-308 (367)
177 2i1m_A Macrophage colony-stimu 100.0 1.6E-42 5.6E-47 375.4 11.2 260 554-832 45-324 (333)
178 3g2f_A Bone morphogenetic prot 100.0 2.1E-42 7.3E-47 375.0 12.0 259 555-832 13-316 (336)
179 3e7e_A HBUB1, BUB1A, mitotic c 100.0 1.2E-41 4.1E-46 373.3 18.0 249 554-831 64-336 (365)
180 2v62_A Serine/threonine-protei 100.0 2.5E-42 8.7E-47 375.5 12.3 267 555-832 37-326 (345)
181 2xrw_A Mitogen-activated prote 100.0 1.3E-41 4.3E-46 373.6 17.8 261 555-828 25-319 (371)
182 3pfq_A PKC-B, PKC-beta, protei 100.0 1.3E-41 4.3E-46 399.8 18.9 252 554-828 340-598 (674)
183 3brb_A Proto-oncogene tyrosine 100.0 1E-41 3.5E-46 365.8 16.4 260 554-832 33-306 (313)
184 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-40 7.5E-45 384.9 28.8 405 8-426 52-514 (562)
185 1u59_A Tyrosine-protein kinase 100.0 9.5E-42 3.2E-46 361.1 15.8 254 557-832 11-270 (287)
186 2ac3_A MAP kinase-interacting 100.0 6.1E-42 2.1E-46 368.0 14.5 264 556-828 13-296 (316)
187 3gbz_A Kinase, CMGC CDK; ssgci 100.0 3.3E-42 1.1E-46 372.0 12.2 266 553-828 32-319 (329)
188 2rku_A Serine/threonine-protei 100.0 1.3E-41 4.4E-46 361.5 16.4 251 555-828 15-266 (294)
189 3lxl_A Tyrosine-protein kinase 100.0 1.6E-42 5.3E-47 374.5 9.2 266 555-832 23-301 (327)
190 3q5i_A Protein kinase; CDPK, m 100.0 1.1E-41 3.7E-46 389.7 16.3 256 553-828 34-302 (504)
191 1t4h_A Serine/threonine-protei 100.0 1.9E-41 6.4E-46 359.5 16.9 248 557-828 28-283 (290)
192 3rp9_A Mitogen-activated prote 100.0 6.4E-42 2.2E-46 387.3 14.1 195 555-757 53-279 (458)
193 2yfx_A Tyrosine-protein kinase 100.0 6.8E-42 2.3E-46 369.5 13.6 259 554-832 29-302 (327)
194 2jii_A Serine/threonine-protei 100.0 2.9E-42 1E-46 376.2 10.8 260 555-832 42-334 (352)
195 1mqb_A Ephrin type-A receptor 100.0 1.6E-41 5.3E-46 367.3 16.3 256 556-832 45-307 (333)
196 2wtk_C Serine/threonine-protei 100.0 5.7E-41 1.9E-45 358.6 20.4 256 554-828 4-264 (305)
197 3pls_A Macrophage-stimulating 100.0 1.4E-41 4.9E-46 361.9 15.6 256 557-832 23-285 (298)
198 2owb_A Serine/threonine-protei 100.0 1.4E-41 4.7E-46 368.1 15.7 251 555-828 41-292 (335)
199 3kvw_A DYRK2, dual specificity 100.0 7.8E-42 2.7E-46 381.9 14.1 200 555-768 97-305 (429)
200 1byg_A CSK, protein (C-termina 100.0 5.2E-42 1.8E-46 361.4 11.8 250 555-833 21-272 (278)
201 1fvr_A Tyrosine-protein kinase 100.0 2.5E-41 8.7E-46 365.0 17.3 255 555-832 25-298 (327)
202 1b6c_B TGF-B superfamily recep 100.0 7.9E-41 2.7E-45 363.7 21.1 264 551-832 38-334 (342)
203 2jam_A Calcium/calmodulin-depe 100.0 9.6E-42 3.3E-46 364.3 13.6 252 553-828 7-262 (304)
204 2pml_X PFPK7, Ser/Thr protein 100.0 2.2E-41 7.6E-46 368.9 16.7 265 555-828 31-323 (348)
205 3f66_A Hepatocyte growth facto 100.0 2.2E-41 7.4E-46 360.5 16.2 256 556-832 26-289 (298)
206 1xbb_A Tyrosine-protein kinase 100.0 1.8E-41 6.2E-46 359.7 15.4 255 556-832 17-277 (291)
207 1jl5_A Outer protein YOPM; leu 100.0 2.6E-40 9E-45 371.6 25.7 388 7-451 10-416 (454)
208 2r3i_A Cell division protein k 100.0 2.5E-41 8.5E-46 360.3 16.5 265 555-828 3-284 (299)
209 3cc6_A Protein tyrosine kinase 100.0 1.7E-41 5.8E-46 358.0 15.0 255 555-832 12-271 (281)
210 2ozo_A Tyrosine-protein kinase 100.0 2.1E-41 7.3E-46 394.3 17.2 249 562-832 343-596 (613)
211 1ua2_A CAK, cell division prot 100.0 1.5E-41 5.2E-46 369.5 14.9 269 553-828 8-292 (346)
212 3a7i_A MST3 kinase, serine/thr 100.0 5.4E-41 1.9E-45 358.3 18.9 249 555-828 22-271 (303)
213 3lxp_A Non-receptor tyrosine-p 100.0 6.1E-42 2.1E-46 368.1 11.3 266 556-832 32-308 (318)
214 2ycf_A Serine/threonine-protei 100.0 1.2E-41 4.1E-46 366.6 13.6 258 552-828 7-275 (322)
215 4aaa_A Cyclin-dependent kinase 100.0 5E-42 1.7E-46 371.1 10.6 265 555-828 25-307 (331)
216 2h6d_A 5'-AMP-activated protei 100.0 3.9E-41 1.3E-45 354.3 17.1 250 555-828 11-262 (276)
217 4fl3_A Tyrosine-protein kinase 100.0 1.8E-41 6.2E-46 395.8 15.8 250 561-832 375-629 (635)
218 2h8h_A Proto-oncogene tyrosine 100.0 5.2E-42 1.8E-46 393.9 10.8 254 555-832 267-521 (535)
219 3mi9_A Cell division protein k 100.0 4.1E-41 1.4E-45 367.2 17.0 267 555-828 17-312 (351)
220 4hgt_A Casein kinase I isoform 100.0 3.6E-41 1.2E-45 358.4 16.2 260 552-832 6-278 (296)
221 3byv_A Rhoptry kinase; malaria 100.0 3.4E-42 1.2E-46 379.2 8.4 244 555-828 73-360 (377)
222 2fst_X Mitogen-activated prote 100.0 1.5E-41 5E-46 371.6 13.3 260 555-828 29-312 (367)
223 3eb0_A Putative uncharacterize 100.0 1.3E-41 4.3E-46 375.5 12.3 261 553-828 5-322 (383)
224 1x8b_A WEE1HU, WEE1-like prote 100.0 1.8E-41 6.1E-46 359.2 12.7 249 552-828 8-280 (289)
225 3nsz_A CK II alpha, casein kin 100.0 8.1E-41 2.8E-45 361.6 18.1 256 555-828 36-320 (330)
226 3com_A Serine/threonine-protei 100.0 8.6E-41 2.9E-45 358.7 17.7 254 551-828 25-279 (314)
227 3n9x_A Phosphotransferase; mal 100.0 6.9E-41 2.4E-45 375.1 17.5 200 555-762 26-252 (432)
228 2buj_A Serine/threonine-protei 100.0 1.8E-41 6.3E-46 364.5 12.3 256 555-833 29-305 (317)
229 2vwi_A Serine/threonine-protei 100.0 1.3E-41 4.4E-46 363.2 10.9 262 555-828 15-288 (303)
230 2w1i_A JAK2; chromosomal rearr 100.0 2.5E-41 8.4E-46 364.8 13.2 267 555-833 41-321 (326)
231 3uzp_A CKI-delta, CKID, casein 100.0 9.8E-41 3.3E-45 355.1 17.6 258 554-832 8-278 (296)
232 1j1b_A Glycogen synthase kinas 100.0 2.1E-41 7.1E-46 377.6 12.8 258 556-828 55-337 (420)
233 2clq_A Mitogen-activated prote 100.0 5.5E-41 1.9E-45 356.8 15.5 251 557-828 24-279 (295)
234 3eqc_A Dual specificity mitoge 100.0 1.9E-41 6.5E-46 371.2 11.8 260 555-828 33-325 (360)
235 3fme_A Dual specificity mitoge 100.0 3.3E-41 1.1E-45 357.6 12.9 253 555-828 7-267 (290)
236 2w5a_A Serine/threonine-protei 100.0 9.5E-42 3.3E-46 359.6 8.5 255 555-830 6-270 (279)
237 3q60_A ROP5B; pseudokinase, tr 100.0 9.8E-42 3.4E-46 374.8 8.8 255 556-828 63-353 (371)
238 3rgf_A Cyclin-dependent kinase 100.0 1.3E-40 4.5E-45 370.2 17.8 266 553-828 18-334 (405)
239 3qyz_A Mitogen-activated prote 100.0 4E-41 1.4E-45 368.9 13.5 264 555-828 27-314 (364)
240 1u46_A ACK-1, activated CDC42 100.0 3.6E-41 1.2E-45 357.4 12.7 260 555-833 18-283 (291)
241 1phk_A Phosphorylase kinase; g 100.0 4.5E-41 1.6E-45 358.0 13.2 256 554-828 16-284 (298)
242 2vx3_A Dual specificity tyrosi 100.0 1.6E-40 5.5E-45 366.5 18.0 203 554-768 53-264 (382)
243 1blx_A Cyclin-dependent kinase 100.0 6.4E-41 2.2E-45 361.8 14.5 267 553-828 9-297 (326)
244 4exu_A Mitogen-activated prote 100.0 1.1E-40 3.6E-45 366.3 16.0 259 555-828 42-324 (371)
245 3pg1_A Mitogen-activated prote 100.0 5.9E-41 2E-45 367.6 13.7 269 552-828 19-317 (362)
246 1z57_A Dual specificity protei 100.0 1.1E-40 3.7E-45 362.0 15.3 260 555-828 14-329 (339)
247 2j7t_A Serine/threonine-protei 100.0 4.2E-41 1.4E-45 359.0 11.6 253 554-828 18-276 (302)
248 1wak_A Serine/threonine-protei 100.0 9.4E-41 3.2E-45 371.0 14.4 261 554-828 36-392 (397)
249 4e7w_A Glycogen synthase kinas 100.0 3.2E-41 1.1E-45 373.0 10.4 260 555-828 40-322 (394)
250 2x7f_A TRAF2 and NCK-interacti 100.0 1.1E-40 3.7E-45 360.0 14.2 252 554-828 23-287 (326)
251 3sv0_A Casein kinase I-like; t 100.0 2.6E-40 8.9E-45 372.5 17.1 258 555-832 7-276 (483)
252 3an0_A Dual specificity mitoge 100.0 3.9E-41 1.3E-45 365.7 10.0 252 555-828 51-311 (340)
253 1o6v_A Internalin A; bacterial 100.0 1.3E-38 4.4E-43 361.0 31.1 323 7-377 45-367 (466)
254 2wei_A Calmodulin-domain prote 100.0 1.5E-40 5.1E-45 351.9 14.2 255 552-828 19-277 (287)
255 3ll6_A Cyclin G-associated kin 100.0 8.2E-41 2.8E-45 362.6 12.0 253 555-832 28-306 (337)
256 2y4i_B KSR2, HKSR2, kinase sup 100.0 8.5E-41 2.9E-45 359.7 11.9 257 555-833 33-301 (319)
257 3e3p_A Protein kinase, putativ 100.0 3E-40 1E-44 361.8 15.1 267 552-828 20-315 (360)
258 1zy4_A Serine/threonine-protei 100.0 4.5E-40 1.5E-44 351.1 16.1 254 553-828 4-284 (303)
259 2b9h_A MAP kinase FUS3, mitoge 100.0 1.5E-40 5.2E-45 363.1 12.6 264 555-828 11-306 (353)
260 2j0j_A Focal adhesion kinase 1 100.0 2.4E-40 8.3E-45 387.7 15.0 256 554-832 389-649 (656)
261 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-38 4.7E-43 357.9 28.5 345 5-428 39-393 (457)
262 3cek_A Dual specificity protei 100.0 3.2E-40 1.1E-44 354.1 14.4 253 555-828 28-293 (313)
263 2i6l_A Mitogen-activated prote 100.0 3.3E-40 1.1E-44 355.1 14.0 263 555-828 11-306 (320)
264 3fhr_A MAP kinase-activated pr 100.0 2.8E-40 9.4E-45 357.8 13.1 252 554-828 27-288 (336)
265 3coi_A Mitogen-activated prote 100.0 3.9E-40 1.3E-44 359.7 14.0 259 555-828 24-306 (353)
266 2rio_A Serine/threonine-protei 100.0 5E-40 1.7E-44 368.1 14.8 251 557-828 17-296 (434)
267 2eu9_A Dual specificity protei 100.0 7.7E-40 2.6E-44 357.7 15.6 260 555-828 19-334 (355)
268 2id5_A Lingo-1, leucine rich r 100.0 2.4E-38 8.2E-43 360.4 28.4 323 10-378 13-335 (477)
269 3p23_A Serine/threonine-protei 100.0 5E-40 1.7E-44 366.8 12.5 249 556-828 25-284 (432)
270 1q8y_A SR protein kinase; tran 100.0 5.5E-40 1.9E-44 361.6 11.4 260 555-828 19-334 (373)
271 3aln_A Dual specificity mitoge 100.0 6.1E-40 2.1E-44 354.2 10.6 255 555-828 22-286 (327)
272 1o6v_A Internalin A; bacterial 100.0 2.3E-37 8E-42 350.7 31.3 348 27-448 43-390 (466)
273 3a99_A Proto-oncogene serine/t 100.0 5.8E-40 2E-44 352.9 8.8 246 553-828 41-294 (320)
274 2iwi_A Serine/threonine-protei 100.0 1.1E-39 3.8E-44 349.8 9.5 247 552-828 28-284 (312)
275 2dyl_A Dual specificity mitoge 100.0 3E-39 1E-43 347.4 12.5 253 555-828 25-284 (318)
276 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-37 6.4E-42 348.6 27.6 350 24-452 36-393 (457)
277 3qa8_A MGC80376 protein; kinas 100.0 8.6E-40 3E-44 375.2 7.4 264 554-826 13-296 (676)
278 1jl5_A Outer protein YOPM; leu 100.0 2.8E-37 9.5E-42 346.9 26.0 354 28-451 9-377 (454)
279 2id5_A Lingo-1, leucine rich r 100.0 1.3E-36 4.3E-41 346.1 29.9 324 32-425 13-336 (477)
280 3uqc_A Probable conserved tran 100.0 1.8E-38 6.1E-43 334.9 13.1 232 555-832 31-263 (286)
281 3m2w_A MAP kinase-activated pr 100.0 8.7E-38 3E-42 332.7 15.6 231 555-828 17-257 (299)
282 2pzi_A Probable serine/threoni 100.0 8.4E-38 2.9E-42 370.1 13.8 237 555-830 80-324 (681)
283 3dzo_A Rhoptry kinase domain; 100.0 3E-38 1E-42 351.2 8.6 243 556-828 79-364 (413)
284 2vuw_A Serine/threonine-protei 100.0 5.9E-38 2E-42 339.9 7.9 249 554-828 19-332 (336)
285 3o6n_A APL1; leucine-rich repe 100.0 2.9E-35 9.9E-40 325.7 26.2 311 28-377 43-353 (390)
286 4fmz_A Internalin; leucine ric 100.0 1.8E-34 6.1E-39 314.1 30.3 305 6-376 42-346 (347)
287 4fmz_A Internalin; leucine ric 100.0 1.7E-34 5.9E-39 314.3 28.7 318 15-398 29-346 (347)
288 3oja_B Anopheles plasmodium-re 100.0 6.2E-35 2.1E-39 340.9 26.6 312 28-378 49-360 (597)
289 3oja_B Anopheles plasmodium-re 100.0 1.6E-34 5.6E-39 337.3 27.0 312 52-448 49-360 (597)
290 3o6n_A APL1; leucine-rich repe 100.0 2E-34 6.9E-39 318.9 24.8 310 6-354 43-354 (390)
291 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-33 7.8E-38 303.2 26.2 288 9-350 34-331 (332)
292 1xku_A Decorin; proteoglycan, 100.0 6.7E-33 2.3E-37 299.4 28.5 289 9-350 32-330 (330)
293 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-32 6.5E-37 296.0 27.4 306 15-374 11-331 (332)
294 1xku_A Decorin; proteoglycan, 100.0 4.3E-32 1.5E-36 293.0 27.9 290 30-374 31-330 (330)
295 1ogq_A PGIP-2, polygalacturona 100.0 5.3E-33 1.8E-37 297.2 14.3 121 30-150 50-173 (313)
296 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-32 3.9E-37 294.6 14.4 249 54-374 50-302 (313)
297 1z7x_W Ribonuclease inhibitor; 100.0 6.1E-35 2.1E-39 330.9 -7.2 351 8-376 3-411 (461)
298 1z7x_W Ribonuclease inhibitor; 100.0 5.7E-34 2E-38 322.9 -7.1 383 29-446 2-440 (461)
299 2z80_A TOLL-like receptor 2, v 100.0 1.1E-30 3.8E-35 284.7 17.6 282 8-356 31-318 (353)
300 4azs_A Methyltransferase WBDD; 100.0 3.5E-32 1.2E-36 312.6 4.8 190 562-762 241-438 (569)
301 2z66_A Variable lymphocyte rec 100.0 5.2E-30 1.8E-34 273.6 18.8 249 10-305 9-262 (306)
302 3zyi_A Leucine-rich repeat-con 100.0 6.7E-29 2.3E-33 280.0 24.4 248 9-304 55-303 (452)
303 2z80_A TOLL-like receptor 2, v 100.0 1.2E-29 4.2E-34 276.4 17.7 281 28-380 29-318 (353)
304 1ozn_A Reticulon 4 receptor; N 100.0 2.8E-29 9.5E-34 265.0 19.5 225 10-280 13-238 (285)
305 3zyj_A Leucine-rich repeat-con 100.0 1E-28 3.5E-33 277.5 24.2 248 9-304 44-292 (440)
306 2z66_A Variable lymphocyte rec 100.0 7.8E-29 2.7E-33 264.4 18.4 250 32-329 9-262 (306)
307 1ozn_A Reticulon 4 receptor; N 100.0 3.5E-28 1.2E-32 256.5 20.6 254 33-335 14-268 (285)
308 3zyi_A Leucine-rich repeat-con 100.0 1.2E-27 3.9E-32 269.9 25.6 229 79-353 76-304 (452)
309 3zyj_A Leucine-rich repeat-con 100.0 1.3E-27 4.5E-32 268.5 25.4 248 32-352 45-292 (440)
310 3g06_A SSPH2 (leucine-rich rep 100.0 5.1E-27 1.7E-31 271.3 27.0 269 8-339 40-308 (622)
311 3o53_A Protein LRIM1, AGAP0063 100.0 3.3E-29 1.1E-33 268.5 7.1 264 9-331 11-279 (317)
312 4fcg_A Uncharacterized protein 99.9 2.4E-27 8.3E-32 254.8 19.9 234 54-328 81-314 (328)
313 4fcg_A Uncharacterized protein 99.9 3E-27 1E-31 254.1 20.0 233 78-351 81-313 (328)
314 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-29 9.2E-34 269.1 4.0 260 30-347 10-270 (317)
315 3g06_A SSPH2 (leucine-rich rep 99.9 2E-26 6.9E-31 266.3 27.6 263 30-381 40-302 (622)
316 3ogk_B Coronatine-insensitive 99.9 8E-30 2.7E-34 298.4 -2.9 322 100-424 162-528 (592)
317 1wwl_A Monocyte differentiatio 99.9 4.2E-29 1.5E-33 267.0 2.6 257 49-351 38-308 (312)
318 3ogk_B Coronatine-insensitive 99.9 1.2E-29 4E-34 297.1 -2.4 401 45-448 64-528 (592)
319 3en9_A Glycoprotease, O-sialog 99.9 1.4E-28 4.7E-33 281.2 5.0 190 558-763 339-539 (540)
320 1wwl_A Monocyte differentiatio 99.9 2.3E-27 7.8E-32 253.5 11.2 251 146-447 39-310 (312)
321 2z62_A TOLL-like receptor 4, v 99.9 1.2E-25 4E-30 236.0 22.8 232 4-282 3-239 (276)
322 3oja_A Leucine-rich immune mol 99.9 5.5E-27 1.9E-31 265.8 13.0 236 29-323 33-270 (487)
323 3oja_A Leucine-rich immune mol 99.9 8.4E-27 2.9E-31 264.3 10.2 238 52-347 32-270 (487)
324 2z62_A TOLL-like receptor 4, v 99.9 3E-25 1E-29 232.9 18.0 205 8-212 28-240 (276)
325 2o6q_A Variable lymphocyte rec 99.9 1.1E-24 3.8E-29 227.6 21.5 202 8-210 16-219 (270)
326 3rfs_A Internalin B, repeat mo 99.9 3.5E-25 1.2E-29 231.6 17.0 225 11-291 22-246 (272)
327 2o6q_A Variable lymphocyte rec 99.9 9.5E-24 3.2E-28 220.5 24.3 202 31-280 17-218 (270)
328 1p9a_G Platelet glycoprotein I 99.9 2.8E-24 9.6E-29 226.5 20.0 201 4-209 6-208 (290)
329 3rfs_A Internalin B, repeat mo 99.9 2.4E-24 8.2E-29 225.2 17.4 204 5-217 38-243 (272)
330 1p9a_G Platelet glycoprotein I 99.9 3.6E-23 1.2E-27 218.0 22.0 118 26-149 6-123 (290)
331 2xwt_C Thyrotropin receptor; s 99.9 7.2E-24 2.5E-28 217.2 15.9 134 12-151 17-156 (239)
332 2p1m_B Transport inhibitor res 99.9 8.3E-27 2.8E-31 273.0 -6.9 321 52-377 103-470 (594)
333 3m19_A Variable lymphocyte rec 99.9 2.3E-23 7.8E-28 215.0 19.2 181 8-211 14-194 (251)
334 2p1m_B Transport inhibitor res 99.9 1.8E-26 6.2E-31 270.1 -5.5 365 76-445 103-518 (594)
335 2xwt_C Thyrotropin receptor; s 99.9 1.2E-23 4.2E-28 215.4 13.4 191 41-280 22-218 (239)
336 1h6u_A Internalin H; cell adhe 99.9 3.3E-23 1.1E-27 220.5 15.8 193 6-210 39-231 (308)
337 4ay9_X Follicle-stimulating ho 99.9 6.5E-23 2.2E-27 222.6 18.3 240 11-278 12-257 (350)
338 4glp_A Monocyte differentiatio 99.9 1.1E-23 3.6E-28 224.9 11.6 224 29-280 63-307 (310)
339 1zar_A RIO2 kinase; serine kin 99.9 2.4E-24 8.1E-29 225.5 5.7 159 557-747 92-274 (282)
340 1h6u_A Internalin H; cell adhe 99.9 1.7E-22 5.7E-27 215.1 18.0 206 14-280 25-230 (308)
341 2o6s_A Variable lymphocyte rec 99.9 1.7E-22 5.9E-27 202.1 16.6 182 10-197 9-190 (208)
342 4glp_A Monocyte differentiatio 99.9 2.5E-23 8.6E-28 222.0 11.1 220 9-231 65-307 (310)
343 3goz_A Leucine-rich repeat-con 99.9 4.9E-24 1.7E-28 232.7 4.2 129 12-140 2-152 (362)
344 3goz_A Leucine-rich repeat-con 99.9 8.1E-24 2.8E-28 231.0 4.0 112 34-145 2-128 (362)
345 4ay9_X Follicle-stimulating ho 99.9 1.9E-21 6.7E-26 211.0 20.4 239 33-300 12-255 (350)
346 3m19_A Variable lymphocyte rec 99.9 2.9E-21 1E-25 199.2 20.1 179 198-378 16-194 (251)
347 2ast_B S-phase kinase-associat 99.9 4E-23 1.4E-27 223.3 5.3 221 31-301 48-282 (336)
348 2ca6_A RAN GTPase-activating p 99.9 9.1E-24 3.1E-28 233.0 -0.6 258 48-378 26-318 (386)
349 2ca6_A RAN GTPase-activating p 99.9 1.7E-23 5.8E-28 230.8 -1.0 136 267-402 159-320 (386)
350 2ast_B S-phase kinase-associat 99.9 8.4E-23 2.9E-27 220.8 3.8 258 8-313 47-315 (336)
351 2v70_A SLIT-2, SLIT homolog 2 99.8 7.2E-21 2.5E-25 191.7 16.0 157 10-167 13-170 (220)
352 2v9t_B SLIT homolog 2 protein 99.8 1.1E-20 3.8E-25 190.4 16.4 153 11-164 14-166 (220)
353 2xot_A Amphoterin-induced prot 99.8 8.1E-21 2.8E-25 206.9 13.9 177 10-209 20-202 (361)
354 2o6s_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 184.9 16.2 158 7-171 27-186 (208)
355 3cvr_A Invasion plasmid antige 99.8 4.2E-20 1.4E-24 210.8 18.1 183 8-214 59-248 (571)
356 3e6j_A Variable lymphocyte rec 99.8 9.2E-20 3.1E-24 184.9 17.5 155 10-166 21-175 (229)
357 1h6t_A Internalin B; cell adhe 99.8 6.2E-20 2.1E-24 193.4 14.8 184 15-210 31-214 (291)
358 3cvr_A Invasion plasmid antige 99.8 8E-20 2.7E-24 208.5 16.2 195 31-291 60-254 (571)
359 1h6t_A Internalin B; cell adhe 99.8 8.7E-20 3E-24 192.3 14.5 171 6-186 44-214 (291)
360 2v9t_B SLIT homolog 2 protein 99.8 4.6E-19 1.6E-23 178.5 17.0 153 32-209 13-165 (220)
361 1m9s_A Internalin B; cell inva 99.8 2.7E-19 9.1E-24 206.6 17.3 170 7-210 42-211 (605)
362 1m9s_A Internalin B; cell inva 99.8 1.8E-19 6.1E-24 208.1 15.8 189 10-232 23-211 (605)
363 2xot_A Amphoterin-induced prot 99.8 2.5E-19 8.6E-24 195.1 13.7 156 8-163 39-202 (361)
364 2v70_A SLIT-2, SLIT homolog 2 99.8 8E-19 2.7E-23 176.7 16.2 134 245-378 34-168 (220)
365 1xeu_A Internalin C; cellular 99.8 6.6E-20 2.3E-24 190.1 7.3 170 7-211 18-187 (263)
366 4ezg_A Putative uncharacterize 99.8 4.4E-19 1.5E-23 175.5 11.4 151 6-162 42-193 (197)
367 1zth_A RIO1 serine protein kin 99.8 1.6E-19 5.3E-24 186.7 8.2 143 557-710 49-219 (258)
368 3e6j_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 173.1 18.1 156 31-212 20-175 (229)
369 1xeu_A Internalin C; cellular 99.8 6.4E-19 2.2E-23 182.6 11.7 151 4-165 37-187 (263)
370 1w8a_A SLIT protein; signaling 99.8 2.6E-18 8.9E-23 169.0 15.1 132 11-143 11-143 (192)
371 1dce_A Protein (RAB geranylger 99.8 1.6E-20 5.6E-25 215.5 -4.0 121 245-370 443-567 (567)
372 3sb4_A Hypothetical leucine ri 99.7 7.2E-19 2.5E-23 189.0 7.0 102 242-345 225-327 (329)
373 3sb4_A Hypothetical leucine ri 99.7 8.1E-19 2.8E-23 188.6 5.3 289 29-370 24-328 (329)
374 4b8c_D Glucose-repressible alc 99.7 1.3E-18 4.5E-23 206.1 7.0 185 8-206 173-369 (727)
375 2wfh_A SLIT homolog 2 protein 99.7 2.8E-17 9.5E-22 161.6 15.2 129 10-140 12-140 (193)
376 4ezg_A Putative uncharacterize 99.7 8.4E-18 2.9E-22 166.2 11.5 154 27-210 41-195 (197)
377 2o6r_A Variable lymphocyte rec 99.7 3E-17 1E-21 159.2 15.2 134 9-143 8-141 (177)
378 1w8a_A SLIT protein; signaling 99.7 1.3E-17 4.6E-22 163.9 12.8 132 33-167 11-143 (192)
379 1dce_A Protein (RAB geranylger 99.7 3.7E-20 1.3E-24 212.6 -8.0 204 99-346 346-567 (567)
380 4b8c_D Glucose-repressible alc 99.7 3.1E-18 1.1E-22 202.8 6.3 166 9-182 192-369 (727)
381 4fdw_A Leucine rich hypothetic 99.7 1E-15 3.5E-20 168.0 22.6 128 244-375 249-382 (401)
382 4fdw_A Leucine rich hypothetic 99.7 1.3E-15 4.5E-20 167.1 23.5 270 28-351 111-382 (401)
383 2ell_A Acidic leucine-rich nuc 99.7 3.6E-17 1.2E-21 157.2 9.2 133 29-163 23-160 (168)
384 4fs7_A Uncharacterized protein 99.7 2.6E-15 8.9E-20 165.5 22.7 305 25-347 66-374 (394)
385 2ell_A Acidic leucine-rich nuc 99.7 9.7E-17 3.3E-21 154.2 9.8 134 6-141 22-162 (168)
386 2je0_A Acidic leucine-rich nuc 99.7 8.9E-17 3.1E-21 151.1 8.2 127 29-157 16-147 (149)
387 2wfh_A SLIT homolog 2 protein 99.7 5.1E-16 1.8E-20 152.5 13.8 129 32-164 12-140 (193)
388 2je0_A Acidic leucine-rich nuc 99.7 6.7E-17 2.3E-21 151.9 7.0 128 6-135 15-149 (149)
389 1a9n_A U2A', U2A'; complex (nu 99.7 7.1E-17 2.4E-21 156.4 7.2 135 23-163 12-153 (176)
390 4gyi_A RIO2 kinase; protein ki 99.7 1.8E-17 6.1E-22 177.2 3.0 140 557-709 97-264 (397)
391 2o6r_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 149.3 13.9 134 31-167 8-141 (177)
392 1a9n_A U2A', U2A'; complex (nu 99.6 1.9E-16 6.4E-21 153.4 6.3 132 4-139 15-153 (176)
393 4fs7_A Uncharacterized protein 99.6 3.6E-14 1.2E-18 156.3 23.0 316 41-373 58-376 (394)
394 3g39_A Variable lymphocyte rec 99.6 8.8E-15 3E-19 140.5 13.2 87 54-140 30-116 (170)
395 3g39_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 138.5 13.2 109 9-118 10-118 (170)
396 2r9u_A Variable lymphocyte rec 99.6 2.1E-14 7.1E-19 138.4 13.2 86 54-139 33-118 (174)
397 2r9u_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 135.8 13.2 107 10-117 14-120 (174)
398 4gt6_A Cell surface protein; l 99.5 2.1E-12 7.1E-17 142.1 23.4 314 25-375 58-390 (394)
399 1ds9_A Outer arm dynein; leuci 99.4 8.4E-16 2.9E-20 151.9 -6.9 165 239-422 14-185 (198)
400 1ds9_A Outer arm dynein; leuci 99.4 3.1E-15 1.1E-19 147.8 -3.8 156 263-447 14-186 (198)
401 2ifg_A High affinity nerve gro 99.4 1.7E-13 5.9E-18 148.2 8.9 104 11-115 11-116 (347)
402 4gt6_A Cell surface protein; l 99.4 3.2E-11 1.1E-15 132.7 23.5 311 4-352 59-391 (394)
403 2ifg_A High affinity nerve gro 99.3 2.1E-12 7.3E-17 139.6 11.4 105 33-140 11-117 (347)
404 3un9_A NLR family member X1; l 99.2 1.8E-13 6.3E-18 148.5 -4.3 133 8-140 72-225 (372)
405 3un9_A NLR family member X1; l 99.2 5.5E-13 1.9E-17 144.8 -2.3 170 242-429 71-259 (372)
406 4h09_A Hypothetical leucine ri 99.2 7.6E-10 2.6E-14 121.0 22.1 127 24-158 40-166 (379)
407 3tm0_A Aminoglycoside 3'-phosp 99.2 2.3E-11 7.9E-16 125.8 9.3 144 554-709 13-213 (263)
408 4h09_A Hypothetical leucine ri 99.2 2.6E-09 8.8E-14 116.7 23.7 310 7-363 45-356 (379)
409 1nd4_A Aminoglycoside 3'-phosp 99.1 9.4E-11 3.2E-15 121.0 10.2 132 561-709 26-214 (264)
410 3dxp_A Putative acyl-COA dehyd 99.0 1.1E-09 3.7E-14 118.7 11.4 144 560-710 43-249 (359)
411 3sg8_A APH(2'')-ID; antibiotic 98.9 9.4E-10 3.2E-14 116.2 4.4 188 560-763 25-288 (304)
412 2ra8_A Uncharacterized protein 98.7 2.3E-09 7.8E-14 115.2 0.5 176 26-207 135-341 (362)
413 2ra8_A Uncharacterized protein 98.6 1.5E-08 5.1E-13 108.8 4.2 104 29-135 106-228 (362)
414 3rw6_A Nuclear RNA export fact 98.5 6.3E-09 2.1E-13 105.9 -1.4 62 77-140 169-234 (267)
415 3r70_A Aminoglycoside phosphot 98.5 3E-07 1E-11 97.5 10.7 137 557-711 39-239 (320)
416 3d1u_A Putative fructosamine-3 98.5 3.5E-07 1.2E-11 95.1 10.6 75 560-642 20-97 (288)
417 3rw6_A Nuclear RNA export fact 98.5 1.3E-08 4.5E-13 103.5 -0.4 96 35-132 148-257 (267)
418 1io0_A Tropomodulin; LRR prote 98.4 2.7E-08 9.3E-13 96.3 0.4 114 26-139 32-164 (185)
419 1io0_A Tropomodulin; LRR prote 98.4 5.9E-08 2E-12 93.9 1.4 111 5-115 33-164 (185)
420 3tdw_A Gentamicin resistance p 98.3 2.8E-06 9.5E-11 89.4 12.6 137 560-710 24-225 (306)
421 4gkh_A Aminoglycoside 3'-phosp 98.3 2.4E-06 8.3E-11 88.2 10.1 134 563-709 32-223 (272)
422 3ats_A Putative uncharacterize 98.1 6.2E-06 2.1E-10 88.9 9.8 83 561-644 26-122 (357)
423 3ovc_A Hygromycin-B 4-O-kinase 98.1 7.7E-06 2.6E-10 88.1 9.5 142 560-711 46-245 (362)
424 2olc_A MTR kinase, methylthior 97.9 4E-05 1.4E-09 83.8 11.7 79 560-640 35-120 (397)
425 2q83_A YTAA protein; 2635576, 97.8 5.6E-05 1.9E-09 80.7 9.5 140 561-709 38-252 (346)
426 3rfe_A Platelet glycoprotein I 97.6 9.7E-05 3.3E-09 66.3 6.9 56 11-67 11-68 (130)
427 3jr1_A Putative fructosamine-3 97.6 0.00025 8.5E-09 74.1 10.9 136 561-705 42-232 (312)
428 3e4g_A ATP synthase subunit S, 97.5 1.7E-05 5.6E-10 74.7 1.0 84 54-137 61-150 (176)
429 3f7w_A Putative fructosamine-3 97.5 0.00073 2.5E-08 70.0 12.4 75 560-642 20-97 (288)
430 2pyw_A Uncharacterized protein 97.4 0.00058 2E-08 75.0 11.6 78 678-759 231-313 (420)
431 3e4g_A ATP synthase subunit S, 97.2 0.00021 7.1E-09 67.2 4.2 34 244-277 62-95 (176)
432 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00016 5.6E-09 69.2 1.2 63 29-91 40-111 (197)
433 3csv_A Aminoglycoside phosphot 96.9 0.002 6.9E-08 68.2 9.2 34 678-711 182-219 (333)
434 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00034 1.1E-08 67.1 1.8 108 6-113 39-168 (197)
435 3rfe_A Platelet glycoprotein I 96.7 0.0024 8.3E-08 57.0 6.6 36 79-114 32-67 (130)
436 3dxq_A Choline/ethanolamine ki 96.6 0.0055 1.9E-07 63.7 9.7 139 560-711 23-204 (301)
437 2ppq_A HSK, HK, homoserine kin 96.5 0.0039 1.3E-07 65.6 7.3 141 562-709 29-217 (322)
438 1zyl_A Hypothetical protein YI 96.4 0.029 9.9E-07 59.0 13.7 141 562-710 33-224 (328)
439 1nw1_A Choline kinase (49.2 KD 96.2 0.0079 2.7E-07 65.9 7.9 72 561-642 79-159 (429)
440 3feg_A Choline/ethanolamine ki 96.0 0.017 6E-07 61.8 9.4 140 562-710 57-255 (379)
441 3i1a_A Spectinomycin phosphotr 95.9 0.031 1.1E-06 59.1 10.9 34 678-711 205-238 (339)
442 2qg7_A Ethanolamine kinase PV0 95.6 0.028 9.7E-07 61.9 9.0 73 561-642 114-188 (458)
443 3c5i_A Choline kinase; choline 95.4 0.021 7E-07 61.3 7.3 73 561-642 39-121 (369)
444 2yle_A Protein spire homolog 1 95.2 0.038 1.3E-06 53.1 7.3 102 641-761 34-135 (229)
445 3f2s_A CK, chetk-alpha, cholin 93.3 0.13 4.4E-06 55.3 7.3 144 562-709 59-280 (401)
446 3mes_A Choline kinase; malaria 91.1 0.55 1.9E-05 50.8 9.0 139 562-710 77-292 (424)
447 3cxl_A N-chimerin; SH2, RHO-GA 87.1 0.1 3.5E-06 57.5 -0.4 61 561-626 148-215 (463)
448 4ann_A ESSB; membrane protein, 81.4 3 0.0001 40.0 7.0 123 604-763 35-158 (215)
449 4ano_A ESSB; membrane protein, 81.2 4.6 0.00016 38.8 8.3 120 606-763 42-163 (219)
450 2ks1_B Epidermal growth factor 79.6 2.2 7.5E-05 29.2 3.8 18 487-504 13-30 (44)
451 3g15_A CK, chetk-alpha, cholin 79.4 3.3 0.00011 44.4 7.5 30 681-710 246-281 (401)
452 2l2t_A Receptor tyrosine-prote 76.8 2.6 9E-05 28.8 3.5 16 487-502 12-27 (44)
453 2lz0_A Uncharacterized protein 66.8 12 0.0004 31.0 6.2 46 41-87 7-52 (100)
454 2lz0_A Uncharacterized protein 46.0 39 0.0013 27.8 5.9 46 65-111 7-52 (100)
455 1cja_A Protein (actin-fragmin 28.5 77 0.0026 32.4 5.9 79 629-709 156-237 (342)
456 3ls8_A Phosphatidylinositol 3- 25.2 3E+02 0.01 30.7 10.4 82 618-707 402-500 (614)
457 2x6h_A GH13170P, VPS34, phosph 21.8 3.2E+02 0.011 31.0 10.0 44 657-707 529-574 (696)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-59 Score=564.31 Aligned_cols=467 Identities=36% Similarity=0.535 Sum_probs=405.3
Q ss_pred CCCCCCCEEECCCCCCCC-cccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296 5 GGIDGLKLLNFSKNELVS-LPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL 83 (833)
Q Consensus 5 ~~l~~L~~L~ls~N~l~~-i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 83 (833)
+++++|++|++++|.+++ +|.|..+++|++|+|++|++++..+..|.++++|++|+|++|.+++..|.. .+++|++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 466777777788887776 466777888888888888888777777888888888888888887766654 77788888
Q ss_pred EccCCcCcccCCccccCC-CCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcc-cccCCccCcccccccc
Q 003296 84 VLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTS-LASITTLSRFAANQNK 161 (833)
Q Consensus 84 ~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~l~~n~ 161 (833)
+|++|.+++.+|..+..+ ++|++|+|++|++++.+|..|+++++|++|+|++|.+++.+|.. +..+++|+.|++++|+
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 888888887888887765 88888889888888888888888899999999999888777765 8888889999999998
Q ss_pred ccccCChhhh--h-cCCEEecccccccccCCccCCC--CCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCC
Q 003296 162 FSGSVPGGIT--R-FLRNLDLSYNKLLGVIPIDLLS--HPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEI 234 (833)
Q Consensus 162 l~~~~p~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~--~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~ 234 (833)
+++.+|..+. . .|+.|+|++|++.+.+|..+.. +++|++|++++|.+++.+|..+. ++|+.|++++|.+.+.+
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 8888887763 2 7899999999998888887776 78899999999999988888775 78999999999988754
Q ss_pred CccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCC
Q 003296 235 PSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQL 314 (833)
Q Consensus 235 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 314 (833)
+..|..+++|++|+|++|++++.+|..+..+++|++|+|++|++.+.+|..+..+++|+.|++++|++++.+|..|..+
T Consensus 435 -p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 435 -PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp -CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred -cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccc-----------------------------------
Q 003296 315 KLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI----------------------------------- 359 (833)
Q Consensus 315 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~----------------------------------- 359 (833)
++|++|++++|++++.+|..+..+++|+.|+|++|+++|.+|..+
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999988777543
Q ss_pred -----------------------------------cCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchh
Q 003296 360 -----------------------------------TNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIP 402 (833)
Q Consensus 360 -----------------------------------~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p 402 (833)
..+++|+.|+|++|+++|.+|.....+. +.|+|++|.++|.+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 3356799999999999999998776655 679999999999999
Q ss_pred hhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCCCCcccccc---cCCCcccccccCCCC
Q 003296 403 TTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVD---TTGNLKLINVTAPDT 474 (833)
Q Consensus 403 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~---~~~n~~l~~~~~~~~ 474 (833)
..|+.+++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|....+..+. ..||+.+||.+.+.+
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCC
Confidence 999999999999999999999999999999999999999999999999877766654 449999999876544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-56 Score=537.78 Aligned_cols=442 Identities=34% Similarity=0.516 Sum_probs=360.8
Q ss_pred CCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc
Q 003296 7 IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS 86 (833)
Q Consensus 7 l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 86 (833)
+++|++|++++|.+++...+..+++|++|+|++|++++..+. |+++++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 334444444444443332234556666666666666665554 6666666666666666666666666666666666666
Q ss_pred CCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCC-CCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296 87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGEL-SKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS 165 (833)
Q Consensus 87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~ 165 (833)
+|.+++.+|.. .+++|++|+|++|++++.+|..+..+ ++|++|+|++|.+++.+|..|+.+++|+.|++++|.+++.
T Consensus 256 ~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 256 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp SSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence 66666655544 66667777777777766777777664 8888888888888888888888888888888888888877
Q ss_pred CChh-h--hhcCCEEecccccccccCCccCCCCC-CCCEEecccccCcccCCCCCC----cCCcEEEcCCccccCCCCcc
Q 003296 166 VPGG-I--TRFLRNLDLSYNKLLGVIPIDLLSHP-NLQTIDLSVNMLEGSLPQNMS----PNLVRLRLGTNLLIGEIPSA 237 (833)
Q Consensus 166 ~p~~-~--~~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~----~~L~~L~l~~n~l~~~~~~~ 237 (833)
+|.. + .+.|++|+|++|++.+.+|..+..++ +|++|++++|.+++.+|..+. ++|+.|++++|.+.+.+| .
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~ 412 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-P 412 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-G
T ss_pred CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC-H
Confidence 7765 3 45688888888888888888777776 888888888888887776653 578999999998876544 5
Q ss_pred ccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcC
Q 003296 238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL 317 (833)
Q Consensus 238 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 317 (833)
.|..+++|++|+|++|++++..|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..|..+++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCccc------------
Q 003296 318 STMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPR------------ 385 (833)
Q Consensus 318 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------------ 385 (833)
++|++++|++++.+|..|+.+++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|.....
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999888743211
Q ss_pred ------------------------------------------------------------ccceeeccccccccchhhhh
Q 003296 386 ------------------------------------------------------------LQIALNLSSNLFEGPIPTTF 405 (833)
Q Consensus 386 ------------------------------------------------------------~~~~L~Ls~N~l~~~~p~~~ 405 (833)
....|||++|.++|.+|..|
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 12468999999999999999
Q ss_pred ccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCCC
Q 003296 406 ARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF 452 (833)
Q Consensus 406 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 452 (833)
+.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 99999999999999999999999999999999999999999999863
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=2.4e-57 Score=479.57 Aligned_cols=257 Identities=19% Similarity=0.275 Sum_probs=210.0
Q ss_pred hcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 556 VANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
+++..+.||+|+||+||+|++ .+++.||||+++.. ......++|.+|+++|++++|||||+++|+|.+++.
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~---~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~ 103 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDK---AEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP 103 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC----CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcc---cChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCE
Confidence 345668899999999999986 25789999999532 123346789999999999999999999999999999
Q ss_pred eEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC
Q 003296 630 AYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS 695 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~ 695 (833)
.+||||||++|||.++|+... ...++|.++..|+.|||+||+||| +.+||||||||+|||+++
T Consensus 104 ~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~ 180 (308)
T 4gt4_A 104 LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYD 180 (308)
T ss_dssp CEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECG
T ss_pred EEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECC
Confidence 999999999999999997532 135999999999999999999999 788999999999999999
Q ss_pred CCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHH
Q 003296 696 LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLR 774 (833)
Q Consensus 696 ~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~ 774 (833)
++.+||+|||+|+..............+||+.|||||++.++.|+.|+|||||||++|||+| |+.||.+... .+.+..
T Consensus 181 ~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~-~~~~~~ 259 (308)
T 4gt4_A 181 KLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-QDVVEM 259 (308)
T ss_dssp GGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-HHHHHH
T ss_pred CCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH-HHHHHH
Confidence 99999999999987654433333456789999999999999999999999999999999999 8999976443 222221
Q ss_pred hhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 775 NSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
........ . +..++.++.+++.+||+.||++||||+||+++|+..
T Consensus 260 -i~~~~~~~------~------p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 260 -IRNRQVLP------C------PDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp -HHTTCCCC------C------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred -HHcCCCCC------C------cccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 11111110 0 112345788999999999999999999999999864
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-57 Score=477.03 Aligned_cols=259 Identities=23% Similarity=0.320 Sum_probs=201.5
Q ss_pred hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE 635 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e 635 (833)
++...+.||+|+||+||+|++.+ .||||+++.... .....++|.+|+++|++++|||||+++|+|. ++..|||||
T Consensus 37 ~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~--~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iVmE 111 (307)
T 3omv_A 37 EVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDP--TPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp SCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred HeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEEEE
Confidence 45567889999999999998743 599999853221 1223578999999999999999999999886 467899999
Q ss_pred eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296 636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS 715 (833)
Q Consensus 636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~ 715 (833)
||++|+|.++|+.. ...++|.++..|+.|||+||+||| +.+||||||||+|||+++++.+||+|||+|+.......
T Consensus 112 y~~gGsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~ 187 (307)
T 3omv_A 112 WCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred cCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence 99999999999854 346999999999999999999999 78999999999999999999999999999987654333
Q ss_pred CCccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 716 TGSLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 716 ~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
.......+||+.|||||++.+ ..|+.|+|||||||++|||+||+.||.+.............. . ..+....
T Consensus 188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~-~-----~~p~~~~ 261 (307)
T 3omv_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRG-Y-----ASPDLSK 261 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTT-C-----CCCCSTT
T ss_pred ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcC-C-----CCCCccc
Confidence 333456789999999999863 469999999999999999999999998655443322221111 1 1111111
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. ....+.++.+++.+||+.||++||||.||+++|+.+
T Consensus 262 ~---~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l 298 (307)
T 3omv_A 262 L---YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELL 298 (307)
T ss_dssp S---CTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHH
T ss_pred c---cccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 1 112345788999999999999999999999998865
No 5
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=4.5e-57 Score=482.09 Aligned_cols=256 Identities=21% Similarity=0.254 Sum_probs=202.2
Q ss_pred hcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 556 VANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
++...+.||+|+||+||+|++. +|+.||||+++... ....++|.+|+++|++++|||||+++|+|.+++.
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~----~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~ 117 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS----ESARQDFQREAELLTMLQHQHIVRFFGVCTEGRP 117 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS----HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCC----HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence 4556788999999999999853 57899999995322 2235789999999999999999999999999999
Q ss_pred eEEEEeeCCCCChhhhhhcCC-------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296 630 AYLFYEYAPKGTLFDVLHGCL-------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL 696 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~-------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~ 696 (833)
.|||||||++|||.++++... ...++|.+++.|+.|||+||+||| +.+||||||||+|||++++
T Consensus 118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~ 194 (329)
T 4aoj_A 118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQG 194 (329)
T ss_dssp EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETT
T ss_pred EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCC
Confidence 999999999999999997532 236999999999999999999999 7889999999999999999
Q ss_pred CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHh
Q 003296 697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRN 775 (833)
Q Consensus 697 ~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~ 775 (833)
+.+||+|||+|+..............+||+.|||||++.+..|+.++|||||||++|||+| |+.||.+..... .+..
T Consensus 195 ~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~-~~~~- 272 (329)
T 4aoj_A 195 LVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE-AIDC- 272 (329)
T ss_dssp TEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH-HHHH-
T ss_pred CcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH-HHHH-
Confidence 9999999999997754433333345789999999999999999999999999999999999 899997644322 2111
Q ss_pred hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
....... ..+ ...+.++.+++.+||+.||++||||+||+++|+.+
T Consensus 273 i~~g~~~------~~p------~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l 317 (329)
T 4aoj_A 273 ITQGREL------ERP------RACPPEVYAIMRGCWQREPQQRHSIKDVHARLQAL 317 (329)
T ss_dssp HHHTCCC------CCC------TTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHH
T ss_pred HHcCCCC------CCc------ccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 1111111 011 12345788999999999999999999999999875
No 6
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=1.9e-57 Score=478.18 Aligned_cols=257 Identities=21% Similarity=0.273 Sum_probs=208.6
Q ss_pred HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~ 628 (833)
++|...+.||+|+||+||+|++. +|+.||||+++... ....++|.+|+++|++++|||||+++|+|.+++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~----~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~ 88 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS----DNARKDFHREAELLTNLQHEHIVKFYGVCVEGD 88 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC----HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCC----hHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC
Confidence 35667789999999999999863 57899999995322 223578999999999999999999999999999
Q ss_pred ceEEEEeeCCCCChhhhhhcCC-----------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCL-----------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK 697 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~-----------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~ 697 (833)
..|||||||++|||.++|+... ...++|.+++.|+.|||+||+||| +++||||||||+|||+++++
T Consensus 89 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~ 165 (299)
T 4asz_A 89 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENL 165 (299)
T ss_dssp SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG
T ss_pred EEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCC
Confidence 9999999999999999997532 246999999999999999999999 78899999999999999999
Q ss_pred CceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhh
Q 003296 698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNS 776 (833)
Q Consensus 698 ~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~ 776 (833)
.+||+|||+|+..............+||+.|||||++.+..|+.|+|||||||++|||+| |+.||.+.... +.... .
T Consensus 166 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~-~~~~~-i 243 (299)
T 4asz_A 166 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN-EVIEC-I 243 (299)
T ss_dssp CEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-HHHHH-H
T ss_pred cEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH-HHHHH-H
Confidence 999999999987654332222334679999999999999999999999999999999999 89999764432 22211 1
Q ss_pred cccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
..+... ..+ ...+.++.+++.+||+.||++||||+||++.|+++
T Consensus 244 ~~~~~~------~~p------~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~ 287 (299)
T 4asz_A 244 TQGRVL------QRP------RTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNL 287 (299)
T ss_dssp HHTCCC------CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HcCCCC------CCC------ccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 111110 001 12345788999999999999999999999999875
No 7
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=6.4e-56 Score=464.63 Aligned_cols=251 Identities=18% Similarity=0.239 Sum_probs=212.0
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||+||+|+. .+|+.||||++. +.........+.+.+|+++|++++|||||+++++|++++..|+|
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~-k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv 110 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE-KRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG 110 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEE-HHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 4688999999999999999996 589999999994 33333445567899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||+||+|.+++++ .+.+++.++..|+.||+.||+||| +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus 111 mEy~~gG~L~~~i~~--~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 111 LSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp ECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence 999999999999986 356999999999999999999999 789999999999999999999999999999987654
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.......+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.+.. +.......... .++.
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~-~~~~~i~~~~~--------~~p~- 255 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG-LIFAKIIKLEY--------DFPE- 255 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHTCC--------CCCT-
T ss_pred CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHcCCC--------CCCc-
Confidence 4433456789999999999999999999999999999999999999999765432 22222111111 1111
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVL 826 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl 826 (833)
..+.++.+++.+||+.||++|||++|++
T Consensus 256 -----~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 256 -----KFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp -----TCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred -----ccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 1234678999999999999999999864
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.5e-55 Score=468.98 Aligned_cols=250 Identities=14% Similarity=0.228 Sum_probs=209.5
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
..|+..+.||+|+||+||+|+. .+|+.||||++... .....+.+.+|+++|++++|||||+++++|.+++.+|||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~----~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iv 149 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLR----KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV 149 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGG----GCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecC----chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 3477788999999999999997 48999999999422 233456799999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||++|+|.++++. ..+++.++..|+.||+.||+||| +.+||||||||+|||++.++.+||+|||+|+.....
T Consensus 150 mEy~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 223 (346)
T 4fih_A 150 MEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE 223 (346)
T ss_dssp ECCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS
T ss_pred EeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCC
Confidence 999999999999975 35999999999999999999999 789999999999999999999999999999987543
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. ...+.+||+.|||||++.+..|+.++||||+||++|||++|+.||.+......+... ... . .+...
T Consensus 224 ~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i-~~~-~------~~~~~-- 291 (346)
T 4fih_A 224 VP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMI-RDN-L------PPRLK-- 291 (346)
T ss_dssp SC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-HHS-S------CCCCS--
T ss_pred CC--cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHH-HcC-C------CCCCC--
Confidence 32 335689999999999999999999999999999999999999999865543322111 111 0 00111
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.+...+.++.+++.+||+.||++|||++|+++|
T Consensus 292 --~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 292 --NLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp --CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred --ccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 112334578899999999999999999999875
No 9
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=4e-56 Score=474.15 Aligned_cols=253 Identities=21% Similarity=0.291 Sum_probs=204.1
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||+||+|+. .+|+.||||++..... .....+.|.+|+++|++++|||||+++++|.+++.+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiV 101 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRM--SSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV 101 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHC--CHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence 3688889999999999999996 5799999999953221 122357899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||+||+|.++++......+++.+++.|+.||+.||+||| +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus 102 mEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 102 MDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp EECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred EeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence 99999999999998655567899999999999999999999 789999999999999999999999999999876422
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
. ....+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.... +........ . ... ..
T Consensus 179 ~--~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~-~~~~~i~~~-~-~~~-----~~-- 246 (350)
T 4b9d_A 179 V--ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK-NLVLKIISG-S-FPP-----VS-- 246 (350)
T ss_dssp H--HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHT-C-CCC-----CC--
T ss_pred c--ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH-HHHHHHHcC-C-CCC-----CC--
Confidence 1 1234578999999999999999999999999999999999999999865433 222222111 1 000 00
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
...+.++.+++.+||+.||++|||++|+++|
T Consensus 247 ----~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 247 ----LHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp ----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred ----ccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 1234568899999999999999999999875
No 10
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=3.4e-55 Score=457.44 Aligned_cols=247 Identities=21% Similarity=0.273 Sum_probs=199.7
Q ss_pred CCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----CCceEE
Q 003296 558 NPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----SDSAYL 632 (833)
Q Consensus 558 ~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----~~~~~l 632 (833)
+..+.||+|+||+||+|.. .+|..||||++..... .....+.|.+|+++|++++|||||+++++|.+ ++.+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~l 106 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL--TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEE
Confidence 4456799999999999997 4799999999953221 12235689999999999999999999999875 345899
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeC-CCCCceeccceeeee
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLK-SLKEPQIGDIELCKV 709 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~-~~~~~ki~dfgl~~~ 709 (833)
|||||++|+|.+++++ ...+++..+..|+.||++||+||| +.+ ||||||||+|||++ .++.+||+|||+|+.
T Consensus 107 vmEy~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~ 181 (290)
T 3fpq_A 107 VTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181 (290)
T ss_dssp EEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred EEeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCEe
Confidence 9999999999999986 456999999999999999999999 555 99999999999998 479999999999986
Q ss_pred eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN 789 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (833)
.... ...+.+||+.|||||++.+ +|+.++|||||||++|||+||+.||.+.............. .. ....
T Consensus 182 ~~~~----~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~-~~-~~~~--- 251 (290)
T 3fpq_A 182 KRAS----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSG-VK-PASF--- 251 (290)
T ss_dssp CCTT----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTT-CC-CGGG---
T ss_pred CCCC----ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcC-CC-CCCC---
Confidence 4321 2356799999999998864 69999999999999999999999998665554433322211 10 0000
Q ss_pred ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....+.++.+++.+||+.||++|||++|+++|
T Consensus 252 -------~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~H 283 (290)
T 3fpq_A 252 -------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp -------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred -------CccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 11123467899999999999999999999875
No 11
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=2.4e-55 Score=466.13 Aligned_cols=251 Identities=16% Similarity=0.137 Sum_probs=202.7
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|+..+.||+|+||+||+|+. .+|+.||||+++.. ..+.+|+++|++++|||||+++++|.+++.+|||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~---------~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~iv 128 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE---------VFRVEELVACAGLSSPRIVPLYGAVREGPWVNIF 128 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT---------TCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHH---------HhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 3566778899999999999997 57999999999421 1235799999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-CceeccceeeeeeCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIELCKVIDP 712 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl~~~~~~ 712 (833)
||||+||+|.++++. .+.+++.++..|+.||+.||+||| +.+||||||||+|||++.++ .+||+|||+|+....
T Consensus 129 mEy~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~ 203 (336)
T 4g3f_A 129 MELLEGGSLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQP 203 (336)
T ss_dssp ECCCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC--
T ss_pred EeccCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccC
Confidence 999999999999986 356999999999999999999999 88999999999999999987 699999999998754
Q ss_pred CCCCC---ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296 713 SKSTG---SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN 789 (833)
Q Consensus 713 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (833)
..... ....++||+.|||||++.+..|+.++|||||||++|||+||+.||.+....... ...........+
T Consensus 204 ~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~-~~i~~~~~~~~~----- 277 (336)
T 4g3f_A 204 DGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLC-LKIASEPPPIRE----- 277 (336)
T ss_dssp ----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCH-HHHHHSCCGGGG-----
T ss_pred CCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHH-HHHHcCCCCchh-----
Confidence 32211 123468999999999999999999999999999999999999999754321111 111111111000
Q ss_pred ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296 790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831 (833)
Q Consensus 790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~ 831 (833)
+ +...+.++.+++.+||+.||++|||+.|++++|..
T Consensus 278 ~------~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~ 313 (336)
T 4g3f_A 278 I------PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGK 313 (336)
T ss_dssp S------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred c------CccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHH
Confidence 1 11234578899999999999999999999998865
No 12
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=3.3e-54 Score=445.81 Aligned_cols=249 Identities=17% Similarity=0.213 Sum_probs=193.0
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||+||+|+. .+|+.||||++.. .........+.|.+|+++|++++|||||++++++.+++..|+|
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~-~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv 91 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINK-KVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEEC-C------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeH-HHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence 4688899999999999999997 5799999999953 2333334567899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||| +|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||+++++.+||+|||+|+.....
T Consensus 92 mEy~-~g~L~~~l~~--~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~ 165 (275)
T 3hyh_A 92 IEYA-GNELFDYIVQ--RDKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp EECC-CEEHHHHHHH--SCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred EeCC-CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCC
Confidence 9999 6899999986 456999999999999999999999 789999999999999999999999999999876533
Q ss_pred CCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
. ...+.+||+.|||||++.+..| +.++||||+||++|||+||+.||.+... ............. ++
T Consensus 166 ~---~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~-~~~~~~i~~~~~~--------~p- 232 (275)
T 3hyh_A 166 N---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI-PVLFKNISNGVYT--------LP- 232 (275)
T ss_dssp ------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHTCCC--------CC-
T ss_pred C---ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHcCCCC--------CC-
Confidence 2 2346789999999999998876 5799999999999999999999975432 2222222111111 11
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
...+.++.+++.+||+.||++|||++|+++|
T Consensus 233 -----~~~s~~~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 233 -----KFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp -----TTSCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred -----CCCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence 1123567899999999999999999999875
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.9e-52 Score=485.75 Aligned_cols=457 Identities=22% Similarity=0.254 Sum_probs=395.4
Q ss_pred CCCCEEECCCCCCCCc-c-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 8 DGLKLLNFSKNELVSL-P-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i-~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
..++.|++++|.|+++ | .|.++++|++|+|++|+|+++.|.+|.++++|++|+|++|++++..|..|+++++|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 4689999999999997 3 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccC--cccccccccc
Q 003296 86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLS--RFAANQNKFS 163 (833)
Q Consensus 86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~--~l~l~~n~l~ 163 (833)
++|.+++..|..|+++++|++|+|++|++++.....+..+++|++|+|++|.+++..|..|+.+++|+ .|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999988888999999999999999999986655666699999999999999998899999999999 8899999988
Q ss_pred ccCChhhhh-----------------------------------------------------cCCEEecccccccccCCc
Q 003296 164 GSVPGGITR-----------------------------------------------------FLRNLDLSYNKLLGVIPI 190 (833)
Q Consensus 164 ~~~p~~~~~-----------------------------------------------------~L~~L~Ls~N~l~~~~~~ 190 (833)
+..|..+.. .|+.|++++|++.+..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 766644311 477888999999888888
Q ss_pred cCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCc-cccCCC
Q 003296 191 DLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQ-QLGSCR 267 (833)
Q Consensus 191 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~ 267 (833)
.|..+++|++|++++|.++ .+|..+. ++|++|++++|.+.+ +++..|..+++|++|++++|.+.+.+|. .+..++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB-GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc-CchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 8999999999999999998 5676665 789999999998765 5567888999999999999999865554 589999
Q ss_pred CCcEEEccCCccCCCC--hhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCcc-ccccCCCCCEE
Q 003296 268 SLTLLNLAQNELNGSL--PIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS-FLSNLTNLVNL 344 (833)
Q Consensus 268 ~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L 344 (833)
+|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..+. .|..+++|+.|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 9999999999998765 77889999999999999999999899999999999999999999887665 48899999999
Q ss_pred EccCCccccccCccccCCCCCCEEEccCCcCCcc-CC--CCcccc--cceeeccccccccchhhhhccCCCCCEEecccC
Q 003296 345 NLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT-IP--MMPPRL--QIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419 (833)
Q Consensus 345 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p--~~~~~~--~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 419 (833)
++++|.+++..|..|..+++|++|++++|++++. ++ .....+ .+.|++++|.+++..|..|..+++|+.|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 9999999998899999999999999999999863 22 222222 267999999999999999999999999999999
Q ss_pred cCccccchhccCCCCCCeeeCcCCcccccCCCC----CcccccccCCCcccc
Q 003296 420 RFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF----SKWVSVDTTGNLKLI 467 (833)
Q Consensus 420 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~~~~~~~~~n~~l~ 467 (833)
++++..|..+..+++| .|++++|++++..|.. .....++..+|+-.|
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 9999999999999999 9999999999877652 122334444665544
No 14
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=3e-54 Score=470.28 Aligned_cols=250 Identities=14% Similarity=0.229 Sum_probs=209.8
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
..|+..+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+++|++++|||||+++++|.+++.+|||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~----~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV 226 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLR----KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV 226 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEST----TCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEecc----chhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEE
Confidence 4588889999999999999997 57999999999532 233456799999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||+||+|.++++. ..+++.++..|+.||+.||+||| +.+||||||||+|||++.++.+||+|||+|+.....
T Consensus 227 mEy~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~ 300 (423)
T 4fie_A 227 MEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE 300 (423)
T ss_dssp EECCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSS
T ss_pred EeCCCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCC
Confidence 999999999999975 35899999999999999999999 789999999999999999999999999999987543
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. ...+.+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.......... ... . .+....
T Consensus 301 ~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i-~~~-~------~~~~~~- 369 (423)
T 4fie_A 301 VP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMI-RDN-L------PPRLKN- 369 (423)
T ss_dssp CC--CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-HHS-C------CCCCSC-
T ss_pred Cc--cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHH-HcC-C------CCCCcc-
Confidence 32 335689999999999999999999999999999999999999999865543322211 111 0 001110
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....+.++.+++.+||+.||++|||++|+++|
T Consensus 370 ---~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 370 ---LHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp ---TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ---cccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 11234578899999999999999999999875
No 15
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=1.2e-54 Score=466.89 Aligned_cols=259 Identities=19% Similarity=0.243 Sum_probs=209.4
Q ss_pred HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC-CCcccceEEEecC
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTPLAYVLAS 627 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~~~~~~~ 627 (833)
++|+..+.||+|+||+||+|... .++.||||+++.... ....++|.+|+++|++++| ||||+++|+|..+
T Consensus 64 ~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~---~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~ 140 (353)
T 4ase_A 64 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACTKP 140 (353)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred HHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---hHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEec
Confidence 56778899999999999999853 346899999953221 1235689999999999975 8999999999765
Q ss_pred -CceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCcccee
Q 003296 628 -DSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIF 692 (833)
Q Consensus 628 -~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nil 692 (833)
+.+|+|||||++|+|.++|+... ...++|.++..|+.|||+||+||| +.+||||||||+|||
T Consensus 141 ~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NIL 217 (353)
T 4ase_A 141 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNIL 217 (353)
T ss_dssp TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEE
T ss_pred CCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCcccee
Confidence 56899999999999999997532 235899999999999999999999 789999999999999
Q ss_pred eCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHH
Q 003296 693 LKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKW 771 (833)
Q Consensus 693 l~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~ 771 (833)
+++++.+||+|||+|+..............+||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.......
T Consensus 218 l~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~ 297 (353)
T 4ase_A 218 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF 297 (353)
T ss_dssp ECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH
T ss_pred eCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 99999999999999997754443333456789999999999999999999999999999999998 99999764432222
Q ss_pred HHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 772 VLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. .....+... ..+ ...+.++.+++.+||+.||++||||+||+++|+++
T Consensus 298 ~-~~i~~g~~~------~~p------~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~l 345 (353)
T 4ase_A 298 C-RRLKEGTRM------RAP------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 345 (353)
T ss_dssp H-HHHHHTCCC------CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred H-HHHHcCCCC------CCC------ccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 2 212111111 111 12245688999999999999999999999999864
No 16
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.4e-53 Score=452.41 Aligned_cols=262 Identities=18% Similarity=0.208 Sum_probs=198.5
Q ss_pred hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----ceE
Q 003296 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----SAY 631 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----~~~ 631 (833)
++...+.||+|+||+||+|++ +|+.||||+++.... ....+.+|+..+.+++|||||+++|+|.+++ .+|
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-----~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~ 77 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-----RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-----HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-----hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEE
Confidence 455678999999999999998 689999999942211 1123445666678899999999999998754 579
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcC-----CCCCeeecCCCccceeeCCCCCceecccee
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF-----TSNPILLLDLSTRNIFLKSLKEPQIGDIEL 706 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~-----~~~~iiHrdlk~~Nill~~~~~~ki~dfgl 706 (833)
||||||++|+|.++++. ..++|..+.+++.|+|+||+|||+. ..++||||||||+|||+|+++.+||+|||+
T Consensus 78 lV~Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGl 154 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 154 (303)
T ss_dssp EEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred EEecCCCCCcHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCC
Confidence 99999999999999985 3599999999999999999999954 234899999999999999999999999999
Q ss_pred eeeeCCCCCCC--ccccccccccccccccccCC------cccccCcchhhHHHHHHHHhCCCcccCCcc-----------
Q 003296 707 CKVIDPSKSTG--SLSTVAGSVGYIPPEYAYTM------RVTMAGNVYSFGVILLELLTGKTAVNQGNE----------- 767 (833)
Q Consensus 707 ~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~----------- 767 (833)
|+......... .....+||+.|||||++.+. .|+.|+|||||||++|||+||++||.....
T Consensus 155 a~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~ 234 (303)
T 3hmm_A 155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS 234 (303)
T ss_dssp CEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCS
T ss_pred CccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccc
Confidence 99875443221 22346899999999998654 578999999999999999999887752211
Q ss_pred --HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 768 --LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 768 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.......... ....++.++... ...+.+..+.+++.+||+.||++||||.||+++|+++
T Consensus 235 ~~~~~~~~~~~~-----~~~~rp~~p~~~-~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l 295 (303)
T 3hmm_A 235 DPSVEEMRKVVC-----EQKLRPNIPNRW-QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295 (303)
T ss_dssp SCCHHHHHHHHT-----TSCCCCCCCGGG-GSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHh-----cccCCCCCCccc-cchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence 0111111111 111122222111 1124556788999999999999999999999999876
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-51 Score=484.58 Aligned_cols=446 Identities=23% Similarity=0.263 Sum_probs=404.5
Q ss_pred CCCCCCCCCEEECCCCCCCCc-c-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCC
Q 003296 3 SCGGIDGLKLLNFSKNELVSL-P-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKAL 80 (833)
Q Consensus 3 ~~~~l~~L~~L~ls~N~l~~i-~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 80 (833)
+++++++|++|++++|.++++ | +|.++++|++|+|++|+++++.+..|+++++|++|+|++|+|+++.|..|+.+++|
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 578999999999999999987 4 59999999999999999999999999999999999999999999888999999999
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCc--EEECcCCcCCCCCCcccccC---------
Q 003296 81 EELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE--VLILSANNLDGRLPTSLASI--------- 149 (833)
Q Consensus 81 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~--~L~Ls~N~l~~~~p~~~~~l--------- 149 (833)
++|+|++|.+++..+..+..+++|++|+|++|.+++..|..|+.+++|+ .|++++|.+++..|..|...
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 9999999999986656666699999999999999999899999999999 99999999998887766432
Q ss_pred ------------------------------------------CccCccccccccccccCChhh--hhcCCEEeccccccc
Q 003296 150 ------------------------------------------TTLSRFAANQNKFSGSVPGGI--TRFLRNLDLSYNKLL 185 (833)
Q Consensus 150 ------------------------------------------~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls~N~l~ 185 (833)
.+|+.+++++|.+++..+..+ .+.|++|++++|++.
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 157778888888887666545 567999999999998
Q ss_pred ccCCccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCC--Cc
Q 003296 186 GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMI--PQ 261 (833)
Q Consensus 186 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~--~~ 261 (833)
.+|..+..+++|++|++++|.+++..|..+. ++|+.|++++|.+.+.++...|..+++|++|++++|.+++.. +.
T Consensus 292 -~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp -CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred -CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 5688899999999999999999987776664 799999999999888888888999999999999999999876 77
Q ss_pred cccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCch-hhcCCCcCceeeccCCcCcccCccccccCCC
Q 003296 262 QLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPS-QFSQLKLLSTMNISWNSLSGSIPSFLSNLTN 340 (833)
Q Consensus 262 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 340 (833)
.+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|. .|..+++|++|++++|.+.+..|..|..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 899999999999999999988899999999999999999999987665 4899999999999999999999999999999
Q ss_pred CCEEEccCCccccc---cCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEe
Q 003296 341 LVNLNLRQNNLNGS---IPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLD 415 (833)
Q Consensus 341 L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 415 (833)
|+.|+|++|++++. .+..+..+++|++|++++|.+++..|.....+. +.|++++|.+++..|..|..++.| .|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 99999999999873 346799999999999999999988876665444 689999999999999999999999 999
Q ss_pred cccCcCccccchhccCCCCCCeeeCcCCcccccCC
Q 003296 416 LSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450 (833)
Q Consensus 416 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 450 (833)
+++|++++.+|..+..+++|+.+++++|++.+..+
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999999999998655
No 18
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=4e-54 Score=451.40 Aligned_cols=250 Identities=18% Similarity=0.205 Sum_probs=198.7
Q ss_pred HhcCCccccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
++|+..+.||+|+||+||+|+. .+++.||||+++.... .......+.+|+++|++++|||||++++++.+++..
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~ 101 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATL--KVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL 101 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEE--EEEECC------CCCCCCCCTTEECEEEEEEETTEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHc--ChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEE
Confidence 4688899999999999999985 2578999999953221 122345789999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
|+|||||+||||.+++++ ...+++.++..++.|++.||+||| +.+||||||||+|||+++++.+||+|||+|+..
T Consensus 102 ~ivmEy~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~ 176 (304)
T 3ubd_A 102 YLILDFLRGGDLFTRLSK--EVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKES 176 (304)
T ss_dssp EEEECCCTTCEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-
T ss_pred EEEEEcCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceec
Confidence 999999999999999986 356999999999999999999999 789999999999999999999999999999875
Q ss_pred CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV 790 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (833)
..... ...+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.+... ........... .
T Consensus 177 ~~~~~--~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~-~~~~i~~~~~~--------~ 245 (304)
T 3ubd_A 177 IDHEK--KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE-TMTMILKAKLG--------M 245 (304)
T ss_dssp ----C--CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC--------C
T ss_pred cCCCc--cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH-HHHHHHcCCCC--------C
Confidence 43322 2356799999999999999999999999999999999999999998654332 22221111110 1
Q ss_pred cCCchhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM 828 (833)
Q Consensus 791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~ 828 (833)
+ ...+.++.+++.+||+.||++||| ++|+++|
T Consensus 246 p------~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~H 282 (304)
T 3ubd_A 246 P------QFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRH 282 (304)
T ss_dssp C------TTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred C------CcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcC
Confidence 1 123456889999999999999998 4677754
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.9e-50 Score=478.62 Aligned_cols=463 Identities=25% Similarity=0.290 Sum_probs=298.3
Q ss_pred CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
++++.|++++|.+++++ .|..+++|++|||++|+++++.+..|+++++|++|+|++|+|+++++..|.++++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 46777777777777764 3777777777777777777777777777777777777777777666667777777777777
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccc--cCCccCcccccccccc
Q 003296 86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLA--SITTLSRFAANQNKFS 163 (833)
Q Consensus 86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~l~~n~l~ 163 (833)
++|.++++.|..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..+. .+++|+.|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 77777776667777777777777777777777777777777777777777777766555443 3355666666555554
Q ss_pred ccCC---------------------------------------------------hhhh----hcCCEEecccccccccC
Q 003296 164 GSVP---------------------------------------------------GGIT----RFLRNLDLSYNKLLGVI 188 (833)
Q Consensus 164 ~~~p---------------------------------------------------~~~~----~~L~~L~Ls~N~l~~~~ 188 (833)
+..| ..+. ..|+.|+|++|++.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 4333 2221 12777888888877777
Q ss_pred CccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccC--------CCCccccCCCCCCCEEECCCCCCCCC
Q 003296 189 PIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIG--------EIPSATFTSLEKLTYLELDNNSFTGM 258 (833)
Q Consensus 189 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~--------~~~~~~f~~l~~L~~L~L~~N~l~~~ 258 (833)
|..|..+++|++|+|++|.+++..|..+. ++|+.|++++|...+ .+....|..+++|++|++++|.+++.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 77777788888888888877766554432 344444444332111 00111333444444444444444444
Q ss_pred CCccccCCCCCcEEEcc----------------------------CCccCCCChhhhCCCCCCcEEEccCCcCCC-----
Q 003296 259 IPQQLGSCRSLTLLNLA----------------------------QNELNGSLPIQLGSLGILQVMNLQLNKLSG----- 305 (833)
Q Consensus 259 ~~~~~~~l~~L~~L~L~----------------------------~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----- 305 (833)
.+..|.++++|++|+++ +|++.+..|..|..+++|+.|++++|.+.+
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 44444443333333332 233333334445555555555555555544
Q ss_pred --------------------cCchhhcCCCcCceeeccCCcCc--ccCccccccCCCCCEEEccCCccccccCccccCCC
Q 003296 306 --------------------EIPSQFSQLKLLSTMNISWNSLS--GSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMR 363 (833)
Q Consensus 306 --------------------~~p~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 363 (833)
..+..|..+++|+.|++++|.+. +..|..|.++++|+.|+|++|++++..+..|.+++
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 504 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence 44444444444444555444443 34566777778888888888888877777788888
Q ss_pred CCCEEEccCCcCCccCCCC--------ccc--ccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCC
Q 003296 364 SLIELQLGGNQLSGTIPMM--------PPR--LQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMP 433 (833)
Q Consensus 364 ~L~~L~L~~N~l~~~~p~~--------~~~--~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 433 (833)
+|++|+|++|++++..+.. ... ..+.|++++|.++...+..|.++++|+.|++++|++++..+..|..++
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584 (680)
T ss_dssp TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence 8888888888877532211 111 225688888888865556788888888888888888887777888888
Q ss_pred CCCeeeCcCCcccccCCC-----CCcccccccCCCccccccc
Q 003296 434 TLTQLLLTNNQLSGVVPK-----FSKWVSVDTTGNLKLINVT 470 (833)
Q Consensus 434 ~L~~L~ls~N~l~~~~p~-----~~~~~~~~~~~n~~l~~~~ 470 (833)
+|+.|++++|++++..|. ......++..+|+-.|+..
T Consensus 585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 888888888888887653 2233445556787777644
No 20
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=1.2e-52 Score=442.75 Aligned_cols=253 Identities=19% Similarity=0.283 Sum_probs=192.7
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD---- 628 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~---- 628 (833)
.++|+..+.||+|+||+||+|+. .+|+.||||+++.... ....+.|.+|+++|++++|||||+++++|.+.+
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~---~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~ 80 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR---ELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEK 80 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSS---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccc
Confidence 45799999999999999999996 4899999999953221 223467999999999999999999999997654
Q ss_pred --------ceEEEEeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296 629 --------SAYLFYEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP 699 (833)
Q Consensus 629 --------~~~lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ 699 (833)
..|+|||||++|+|.++++.... ...++..++.|+.|+++||+||| +.+||||||||+|||++.++.+
T Consensus 81 ~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~v 157 (299)
T 4g31_A 81 LQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVV 157 (299)
T ss_dssp ------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCE
T ss_pred ccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcE
Confidence 36999999999999999986432 24677888999999999999999 7899999999999999999999
Q ss_pred eeccceeeeeeCCCCCC----------CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHH
Q 003296 700 QIGDIELCKVIDPSKST----------GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA 769 (833)
Q Consensus 700 ki~dfgl~~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~ 769 (833)
||+|||+|+........ ...++.+||+.|||||++.+..|+.++|||||||++|||++ ||....+..
T Consensus 158 Kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~ 234 (299)
T 4g31_A 158 KVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERV 234 (299)
T ss_dssp EECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHH
T ss_pred EEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHH
Confidence 99999999877543221 12245689999999999999999999999999999999996 775432221
Q ss_pred HHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....... . .. .++......+...+++.+||+.||++|||+.|+++|
T Consensus 235 ~~~~~~~-~---------~~---~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 280 (299)
T 4g31_A 235 RTLTDVR-N---------LK---FPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN 280 (299)
T ss_dssp HHHHHHH-T---------TC---CCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHHHHh-c---------CC---CCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1111110 0 01 112233445567789999999999999999999874
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-50 Score=486.14 Aligned_cols=452 Identities=23% Similarity=0.212 Sum_probs=263.0
Q ss_pred CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCC-CCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296 8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNL-NGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV 84 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l-~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 84 (833)
++|+.|+|++|.|++++ .|.++++|++|||++|.+ ..+.+.+|.++++|++|+|++|+|+++.|..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 45666666666666542 356666666666666633 233355566666666666666666665566666666666666
Q ss_pred ccCCcCcccCCcc--ccCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCCcCCCCCCcccccC--CccCcccccc
Q 003296 85 LSGNAFHGEIPKG--IADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSANNLDGRLPTSLASI--TTLSRFAANQ 159 (833)
Q Consensus 85 L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~l~l~~ 159 (833)
|++|.+++..|.. |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+ ++|+.|+++.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 6666665544433 5666666666666666655433 356666666666666666666666666555 5566666666
Q ss_pred ccccccCChhhh--------hcCCEEecccccccccCCccCCC-------------------------------------
Q 003296 160 NKFSGSVPGGIT--------RFLRNLDLSYNKLLGVIPIDLLS------------------------------------- 194 (833)
Q Consensus 160 n~l~~~~p~~~~--------~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------- 194 (833)
|.+.+..|..+. ..|+.|+|++|++.+..+..+..
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 666554443321 12566666666554433322211
Q ss_pred -CCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcE
Q 003296 195 -HPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL 271 (833)
Q Consensus 195 -~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 271 (833)
.++|+.|+|++|.+.+..|..+. ++|+.|++++|.+.+ +++..|..+++|++|+|++|++++..|..|.++++|+.
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 13455555555555544444333 455555555555433 33344555555555555555555555555555555555
Q ss_pred EEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccC--------------------
Q 003296 272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSI-------------------- 331 (833)
Q Consensus 272 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------------------- 331 (833)
|+|++|.+.+..+..|..+++|+.|+|++|.+++.. .+++|+.|++++|+++...
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSST
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCccccCc
Confidence 555555555444444555555555555555554321 1233333333333333110
Q ss_pred -ccccccCCCCCEEEccCCccccccCc-cccCCCCCCEEEccCCcCCccC-----CCCcccc--cceeeccccccccchh
Q 003296 332 -PSFLSNLTNLVNLNLRQNNLNGSIPN-SITNMRSLIELQLGGNQLSGTI-----PMMPPRL--QIALNLSSNLFEGPIP 402 (833)
Q Consensus 332 -~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~-----p~~~~~~--~~~L~Ls~N~l~~~~p 402 (833)
+..+..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.+++.. +.....+ ...|+|++|.+++..|
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497 (844)
T ss_dssp THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence 11133667777788888877755433 3556778888888888776332 2222222 2579999999999999
Q ss_pred hhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCCCC-cccccccCCCcccc
Q 003296 403 TTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFS-KWVSVDTTGNLKLI 467 (833)
Q Consensus 403 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~~~~~~~~n~~l~ 467 (833)
..|.++++|+.|+|++|+|++..|..+. ++|+.|++++|++++..|... ....++..+|+-.|
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC 561 (844)
T ss_dssp TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCC
T ss_pred hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCccc
Confidence 9999999999999999999988877776 889999999999999887642 22223333555555
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.6e-50 Score=469.71 Aligned_cols=433 Identities=20% Similarity=0.193 Sum_probs=317.1
Q ss_pred CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
++++.|++++|.+++++ .|.++++|++|||++|+|+++.+.+|.++++|++|+|++|+|+++.|..|+++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56778888888887764 4777888888888888888777777888888888888888888777778888888888888
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCCc-cCCccccCCCCCcEEECcCCcCCCCCCcccccCCccC----ccccccc
Q 003296 86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSG-SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLS----RFAANQN 160 (833)
Q Consensus 86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~l~l~~n 160 (833)
++|.+++..+..|+++++|++|+|++|.+++ .+|..|+++++|++|+|++|.+++..|..|+.+.+|+ .+++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 8888877777778888888888888888775 4577788888888888888888877777777766655 5777777
Q ss_pred cccccCChhh-hhcCCEEeccccccc------------------------------------------------------
Q 003296 161 KFSGSVPGGI-TRFLRNLDLSYNKLL------------------------------------------------------ 185 (833)
Q Consensus 161 ~l~~~~p~~~-~~~L~~L~Ls~N~l~------------------------------------------------------ 185 (833)
.+++..+..+ ...|+.|++++|.+.
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 7765444333 224666776666543
Q ss_pred ----ccCCccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCC
Q 003296 186 ----GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMI 259 (833)
Q Consensus 186 ----~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~ 259 (833)
+..|. +..+++|+.|++++|.+.. +| .+. ++|+.|++++|.+ +.+| .+ .+++|+.|++++|+..+..
T Consensus 272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp--~~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 272 NDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP--TL-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp TTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC--CC-CCSSCCEEEEESCSSCEEC
T ss_pred ccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc--cC-CCCccceeeccCCcCccch
Confidence 12222 4455677777777777653 33 332 5788888888887 5566 34 7788888888888554433
Q ss_pred CccccCCCCCcEEEccCCccCCC--ChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCc-cccc
Q 003296 260 PQQLGSCRSLTLLNLAQNELNGS--LPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP-SFLS 336 (833)
Q Consensus 260 ~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~ 336 (833)
.+..+++|++|++++|.+++. .|..+..+++|+.|++++|.+++ +|..|..+++|++|++++|.+.+..| ..|.
T Consensus 345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 566778888888888887755 36777778888888888888775 44667778888888888888877766 5777
Q ss_pred cCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCcc-CCCCccccc--ceeeccccccccchhhhhccCCCCCE
Q 003296 337 NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT-IPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEV 413 (833)
Q Consensus 337 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~ 413 (833)
.+++|+.|++++|.+++..|..|..+++|++|++++|.+++. +|.....+. +.|++++|.+++..|..|.++++|+.
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 788888888888888777777788888888888888887763 454443333 56788888888777777888888888
Q ss_pred EecccCcCccccchhccCCCCCCeeeCcCCcccccCC
Q 003296 414 LDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450 (833)
Q Consensus 414 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 450 (833)
|++++|++++.+|..|..+++|+.|++++|+++...+
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH
Confidence 8888888887778888888888888888888775433
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.6e-49 Score=467.04 Aligned_cols=447 Identities=21% Similarity=0.211 Sum_probs=305.1
Q ss_pred CCCCCCCCEEECCCCCCCCc-c-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCC
Q 003296 4 CGGIDGLKLLNFSKNELVSL-P-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALE 81 (833)
Q Consensus 4 ~~~l~~L~~L~ls~N~l~~i-~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 81 (833)
++++++|++|++++|.++++ | .|..+++|++|+|++|+++.+.+.+|+++++|++|+|++|+++++.|..|+++++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 34555666666666666654 2 255566666666666666655555566666666666666666655555566666666
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCcccc--CCCCCcEEECcCCcCCCCC-----------------
Q 003296 82 ELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIG--ELSKLEVLILSANNLDGRL----------------- 142 (833)
Q Consensus 82 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~----------------- 142 (833)
+|+|++|.+++..|..|.++++|++|+|++|.+++..+..|. .+++|++|+|++|.+++..
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 666666666655555555555555555555555544443332 2233444444444333333
Q ss_pred ----------------------------------CcccccCCc--cCccccccccccccCChhh--hhcCCEEecccccc
Q 003296 143 ----------------------------------PTSLASITT--LSRFAANQNKFSGSVPGGI--TRFLRNLDLSYNKL 184 (833)
Q Consensus 143 ----------------------------------p~~~~~l~~--L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls~N~l 184 (833)
|..|..++. |+.|++++|.+++..|..+ .+.|++|+|++|++
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 233333322 5566666666655544433 34466666666665
Q ss_pred cccCCccC---------------------------------CCCCCCCEEecccccCcccCCCCCC--c-----------
Q 003296 185 LGVIPIDL---------------------------------LSHPNLQTIDLSVNMLEGSLPQNMS--P----------- 218 (833)
Q Consensus 185 ~~~~~~~~---------------------------------~~~~~L~~L~Ls~N~l~~~~p~~~~--~----------- 218 (833)
.+..|..| ..+++|++|++++|.+++..|..+. +
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 55444333 3334445555555555544333322 2
Q ss_pred -----------------CCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCC-ccccCCCCCcEEEccCCccC
Q 003296 219 -----------------NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIP-QQLGSCRSLTLLNLAQNELN 280 (833)
Q Consensus 219 -----------------~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 280 (833)
+|+.|++++|.+.+ +++..|..+++|++|+|++|++++.+| ..|.++++|++|++++|++.
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCe-EChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 34445555555443 444567778888888888888876544 67788888888888888887
Q ss_pred CCChhhhCCCCCCcEEEccCCcCC--CcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccC--
Q 003296 281 GSLPIQLGSLGILQVMNLQLNKLS--GEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIP-- 356 (833)
Q Consensus 281 ~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-- 356 (833)
+..+..|..++.|+.|++++|.+. +..|..|..+++|++|++++|++++..+..|.++++|++|+|++|++++..+
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence 777788888889999999998887 5688999999999999999999999888899999999999999999987533
Q ss_pred ------ccccCCCCCCEEEccCCcCCccCCCCcccc--cceeeccccccccchhhhhccCCCCCEEecccCcCccccchh
Q 003296 357 ------NSITNMRSLIELQLGGNQLSGTIPMMPPRL--QIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQL 428 (833)
Q Consensus 357 ------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~--~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 428 (833)
..|.++++|+.|+|++|+++...+.....+ .+.|++++|.+++..+..|..+++|+.|++++|+|++..|..
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 247899999999999999985444334433 368999999999888888999999999999999999999988
Q ss_pred cc-CCCCCCeeeCcCCcccccCCC
Q 003296 429 LA-QMPTLTQLLLTNNQLSGVVPK 451 (833)
Q Consensus 429 ~~-~l~~L~~L~ls~N~l~~~~p~ 451 (833)
+. .+++|+.+++++|++.+..+.
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hcccccccCEEEccCCCcccCCcc
Confidence 87 789999999999999987653
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-48 Score=460.04 Aligned_cols=436 Identities=18% Similarity=0.193 Sum_probs=384.0
Q ss_pred CCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296 4 CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL 83 (833)
Q Consensus 4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 83 (833)
|......+.++++++.++.+|. .-.++|++|+|++|+++++.+..|.++++|++|+|++|+|+++.|..|.++++|++|
T Consensus 7 c~~~~~~~~~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 7 CIEVVPNITYQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp CEEEETTTEEECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ceecCCCCceEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence 3333456789999999999986 234899999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC-CCCcccccCCccCccccccccc
Q 003296 84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG-RLPTSLASITTLSRFAANQNKF 162 (833)
Q Consensus 84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~l~~n~l 162 (833)
+|++|.+++..|.+|+++++|++|+|++|.+++..+..|+++++|++|+|++|.+++ .+|..|+++++|+.|++++|++
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 999999999999999999999999999999998888999999999999999999987 5699999999999999999999
Q ss_pred cccCChhh--hhcC----CEEecccccccccCCccCCCCCCCCEEecccccCcc--------------------------
Q 003296 163 SGSVPGGI--TRFL----RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG-------------------------- 210 (833)
Q Consensus 163 ~~~~p~~~--~~~L----~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~-------------------------- 210 (833)
++..|..+ ...| ..|++++|++.+..+..+... +|+.|++++|.+.+
T Consensus 166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred eecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 98877655 3334 489999999998766665544 89999999987641
Q ss_pred --------------------------------cCCCCC--CcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCC
Q 003296 211 --------------------------------SLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT 256 (833)
Q Consensus 211 --------------------------------~~p~~~--~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~ 256 (833)
.+|. + .++++.|++++|.+.. ++ .+..+++|+.|++++|.+
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~--~l~~~~~L~~L~l~~n~l- 319 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE--DVPKHFKWQSLSIIRCQL- 319 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC--CCCTTCCCSEEEEESCCC-
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh--hccccccCCEEEcccccC-
Confidence 1122 2 2678999999998753 55 688899999999999999
Q ss_pred CCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCc--CchhhcCCCcCceeeccCCcCcccCccc
Q 003296 257 GMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGE--IPSQFSQLKLLSTMNISWNSLSGSIPSF 334 (833)
Q Consensus 257 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 334 (833)
+.+| .+ .+++|+.|++++|...+.. .+..+++|+.|++++|.+++. .|..+..+++|++|++++|.+++ +|..
T Consensus 320 ~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~ 394 (606)
T 3vq2_A 320 KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394 (606)
T ss_dssp SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence 5667 45 9999999999999665433 678999999999999999977 48889999999999999999986 5688
Q ss_pred cccCCCCCEEEccCCccccccC-ccccCCCCCCEEEccCCcCCccCCCCccccc--ceeecccccccc-chhhhhccCCC
Q 003296 335 LSNLTNLVNLNLRQNNLNGSIP-NSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEG-PIPTTFARLNG 410 (833)
Q Consensus 335 ~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~-~~p~~~~~l~~ 410 (833)
|..+++|+.|++++|++.+..| ..|..+++|++|++++|.+.+..|.....+. +.|++++|.+++ .+|..|..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 9999999999999999998887 7899999999999999999988876655443 689999999998 47899999999
Q ss_pred CCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCC
Q 003296 411 LEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK 451 (833)
Q Consensus 411 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 451 (833)
|+.|++++|++++..|..|..+++|+.|++++|++++..|.
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 99999999999999999999999999999999999988664
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-48 Score=455.11 Aligned_cols=437 Identities=22% Similarity=0.262 Sum_probs=310.3
Q ss_pred CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
++++.|++++|.++.++ +|.++++|++|||++|+|+++.+..|.++++|++|+|++|+++++.|..|.++++|++|+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35777777777777763 4777777777777777777777777777777777777777777766777777777777777
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCcEEECcCCcCCCCCCcccccCCcc----Cccccccc
Q 003296 86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLASITTL----SRFAANQN 160 (833)
Q Consensus 86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L----~~l~l~~n 160 (833)
++|.+++..+..|+++++|++|+|++|.+++. +|..|+++++|++|++++|.+++..|..+..+++| ..+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 77777766555677777777777777777653 46777777777777777777777666777776666 66777777
Q ss_pred cccccCChhhh-hcCCEEecccc---------------------------------------------------------
Q 003296 161 KFSGSVPGGIT-RFLRNLDLSYN--------------------------------------------------------- 182 (833)
Q Consensus 161 ~l~~~~p~~~~-~~L~~L~Ls~N--------------------------------------------------------- 182 (833)
.+++..|..+. ..|+.|++++|
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 77665554441 23566665554
Q ss_pred -cccccCCccCCCCCCCCEEecccccCcccCCCCCC-cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCC
Q 003296 183 -KLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS-PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIP 260 (833)
Q Consensus 183 -~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~ 260 (833)
.+.+..|..+..+++|+.|++++|.+++ +|..+. .+|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCccc-ccCc---ccccccCEEeCcCCccccccc
Confidence 2333344555566777777777777763 443332 36777777777754 3443 356677777777777766554
Q ss_pred ccccCCCCCcEEEccCCccCCCC--hhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCc-ccccc
Q 003296 261 QQLGSCRSLTLLNLAQNELNGSL--PIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP-SFLSN 337 (833)
Q Consensus 261 ~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~ 337 (833)
. ..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+..+. |..+++|++|++++|.+.+..| ..+..
T Consensus 343 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred c--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc
Confidence 4 66778888888888877543 56677778888888888887765544 7778888888888888876655 46777
Q ss_pred CCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCC-ccCCCCccccc--ceeeccccccccchhhhhccCCCCCEE
Q 003296 338 LTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS-GTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVL 414 (833)
Q Consensus 338 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L 414 (833)
+++|++|++++|.+.+..|..|..+++|++|++++|.++ +.+|.....+. +.|++++|.+++..|..|..+++|+.|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 888888888888887777777888888888888888876 45665444333 567888888887777788888888888
Q ss_pred ecccCcCccccchhccCCCCCCeeeCcCCcccccCCCC
Q 003296 415 DLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF 452 (833)
Q Consensus 415 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 452 (833)
++++|++++.+|..|..+++|+.|++++|+++|..|..
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 88888888777777788888888888888888777653
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-48 Score=473.98 Aligned_cols=437 Identities=22% Similarity=0.247 Sum_probs=376.5
Q ss_pred CCCCCCCCCEEECCCCCCCC-c-c-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcc--cCCC
Q 003296 3 SCGGIDGLKLLNFSKNELVS-L-P-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPIN--LGKT 77 (833)
Q Consensus 3 ~~~~l~~L~~L~ls~N~l~~-i-~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~--~~~l 77 (833)
+++++++|++|+|++|.+.. + | +|.++++|++|+|++|+|+++.|..|.++++|++|+|++|.+++..|.. |.++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 57899999999999996654 6 4 5999999999999999999999999999999999999999999866554 9999
Q ss_pred CCCCEEEccCCcCcccCC-ccccCCCCCCEEeccCCcCCccCCccccCC--CCCcEEECcCCcCCCCCCcccccCCc---
Q 003296 78 KALEELVLSGNAFHGEIP-KGIADYRNLTLIDLSANNLSGSVPDRIGEL--SKLEVLILSANNLDGRLPTSLASITT--- 151 (833)
Q Consensus 78 ~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~--- 151 (833)
++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..|..+ ++|+.|+|++|.+++..|..++.+.+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 999999999999998765 689999999999999999999999999988 99999999999999999988877766
Q ss_pred ---cCccccccccccccCChhhh----------------------------------------hcCCEEecccccccccC
Q 003296 152 ---LSRFAANQNKFSGSVPGGIT----------------------------------------RFLRNLDLSYNKLLGVI 188 (833)
Q Consensus 152 ---L~~l~l~~n~l~~~~p~~~~----------------------------------------~~L~~L~Ls~N~l~~~~ 188 (833)
|+.|++++|.+++..+..+. ..|+.|+|++|.+.+..
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 99999999988765554331 45899999999999999
Q ss_pred CccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCC
Q 003296 189 PIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC 266 (833)
Q Consensus 189 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 266 (833)
|..|..+++|+.|+|++|.+++..|..+. ++|+.|++++|.+.+ +++..|..+++|++|+|++|++.+..+..|..+
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC-CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc-cCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 99999999999999999999988887775 799999999999764 666789999999999999999999988899999
Q ss_pred CCCcEEEccCCccCCCChhhhCCCCCCcEE--------------------EccCCcCCCcC-chhhcCCCcCceeeccCC
Q 003296 267 RSLTLLNLAQNELNGSLPIQLGSLGILQVM--------------------NLQLNKLSGEI-PSQFSQLKLLSTMNISWN 325 (833)
Q Consensus 267 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L--------------------~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N 325 (833)
++|+.|+|++|.+++.. .+++|+.| ++++|++++.. +..+..+++|++|+|++|
T Consensus 362 ~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436 (844)
T ss_dssp CCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC
T ss_pred CCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC
Confidence 99999999999997532 14444444 45555554432 223458899999999999
Q ss_pred cCcccCcc-ccccCCCCCEEEccCCccc-----cccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeecccccc
Q 003296 326 SLSGSIPS-FLSNLTNLVNLNLRQNNLN-----GSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLF 397 (833)
Q Consensus 326 ~l~~~~~~-~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l 397 (833)
++++..+. .+..+++|+.|+|++|.++ +..+..|.++++|+.|+|++|.+++..|.....+. +.|+|++|++
T Consensus 437 ~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence 99976544 4667899999999999997 45567789999999999999999988876654443 6899999999
Q ss_pred ccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCC
Q 003296 398 EGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450 (833)
Q Consensus 398 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 450 (833)
++..|..+. ++|+.||+++|++++.+|..| .+|+.+++++|++.+..+
T Consensus 517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 517 TVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp SSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred CccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 998887776 899999999999999999876 478999999999988665
No 27
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.7e-50 Score=439.00 Aligned_cols=266 Identities=17% Similarity=0.217 Sum_probs=204.2
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec------C
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA------S 627 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~------~ 627 (833)
+.|+..+.||+|+||+||+|+. .+|+.||||+++.... .....+.+.+|+++|++++|||||++++++.. .
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~ 131 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD--VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEF 131 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECcccc--chHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccC
Confidence 3577889999999999999997 5899999999953221 12234678999999999999999999999864 3
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
+.+|||||||+ |+|.+++.. ...+++.++..|+.|++.||+||| +.+||||||||+|||++.++.+||+|||+|
T Consensus 132 ~~~~ivmE~~~-g~L~~~i~~--~~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla 205 (398)
T 4b99_A 132 KSVYVVLDLME-SDLHQIIHS--SQPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMA 205 (398)
T ss_dssp CCEEEEEECCS-EEHHHHHTS--SSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred CEEEEEEeCCC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeeccee
Confidence 57899999996 789999986 457999999999999999999999 789999999999999999999999999999
Q ss_pred eeeCCCC--CCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296 708 KVIDPSK--STGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH 784 (833)
Q Consensus 708 ~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 784 (833)
+...... ......+.+||+.|||||++.+. .|+.++||||+||++|||++|++||.+.+............+.....
T Consensus 206 ~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~ 285 (398)
T 4b99_A 206 RGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPA 285 (398)
T ss_dssp BCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGG
T ss_pred eecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChH
Confidence 8764321 12234568999999999998875 46999999999999999999999998765544332221111111000
Q ss_pred cccc-----------ccc-CCchhH----HHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 785 ILDF-----------NVS-RTSLAV----RSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 785 ~~~~-----------~~~-~~~~~~----~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.... ... .....+ .....++.+|+.+||+.||++|||++|+++|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 345 (398)
T 4b99_A 286 VIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH 345 (398)
T ss_dssp GTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred HhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 0000 000 000001 1124578899999999999999999999875
No 28
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=5.7e-49 Score=426.04 Aligned_cols=262 Identities=18% Similarity=0.207 Sum_probs=199.8
Q ss_pred HHHhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS 627 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~ 627 (833)
..+.|+..+.||+|+||+||+|+.+ +++.||||++... ....++.+|+++|+++ +|||||+++++|.++
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~------~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~ 92 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT------SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKN 92 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT------SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEET
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc------cCHHHHHHHHHHHHHhcCCCCCceEEEEEEEC
Confidence 4567899999999999999999853 5789999998422 2345788999999998 699999999999999
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-CCceecccee
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-KEPQIGDIEL 706 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-~~~ki~dfgl 706 (833)
+..|+|||||++|+|.++++ .+++.++..++.|++.||+||| +.+||||||||+|||++.+ +.+||+|||+
T Consensus 93 ~~~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGl 164 (361)
T 4f9c_A 93 DHVVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGL 164 (361)
T ss_dssp TEEEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred CEEEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCC
Confidence 99999999999999999985 3899999999999999999999 7899999999999999876 7999999999
Q ss_pred eeeeCCCCC--------------------------CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCC
Q 003296 707 CKVIDPSKS--------------------------TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGK 759 (833)
Q Consensus 707 ~~~~~~~~~--------------------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~ 759 (833)
|+....... .....+.+||+.|||||++.+. .|+.++||||+||++|||+||+
T Consensus 165 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~ 244 (361)
T 4f9c_A 165 AQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGR 244 (361)
T ss_dssp CEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTC
T ss_pred CcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCC
Confidence 986543211 0122356899999999998875 4899999999999999999999
Q ss_pred CcccCCccHHHHHHHhhccccc---------cc-------cc--------------ccccccC----------CchhHHH
Q 003296 760 TAVNQGNELAKWVLRNSAQQDK---------LD-------HI--------------LDFNVSR----------TSLAVRS 799 (833)
Q Consensus 760 ~p~~~~~~~~~~~~~~~~~~~~---------~~-------~~--------------~~~~~~~----------~~~~~~~ 799 (833)
.||..+.+..+.........+. .. .. .+...+. ....+..
T Consensus 245 ~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 324 (361)
T 4f9c_A 245 YPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNE 324 (361)
T ss_dssp SSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTT
T ss_pred CCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhcccccccccccccccccccccccccc
Confidence 9997554432211111000000 00 00 0000000 0000112
Q ss_pred HHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 800 QMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 800 ~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.+.++.+++.+||+.||++|||++|+++|
T Consensus 325 is~~a~DLl~~lL~~dP~~R~ta~eaL~H 353 (361)
T 4f9c_A 325 VPDEAYDLLDKLLDLNPASRITAEEALLH 353 (361)
T ss_dssp CCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred CCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 34578899999999999999999999976
No 29
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=3e-49 Score=449.30 Aligned_cols=250 Identities=17% Similarity=0.171 Sum_probs=202.2
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHH---HHHHhcCCCCCcccceEEEecCCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKE---LEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E---~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
++|+..++||+|+||+||+|+. .+|+.||||++. +...........+.+| +++++.++|||||+++++|++++.+
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~-K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD-KKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEe-HHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 5688899999999999999997 489999999994 3232233333444444 6777888999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
|+|||||+||+|.+++.. .+.+++..+..|+.||+.||+||| +.+||||||||+|||++.+|.+||+|||+|+..
T Consensus 268 ylVmEy~~GGdL~~~l~~--~~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQ--HGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEEECCCCSCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeec
Confidence 999999999999999986 456999999999999999999999 889999999999999999999999999999987
Q ss_pred CCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCcc--HHHHHHHhhccccccccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNE--LAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~ 787 (833)
.... ..+.+||+.|||||++.. ..|+.++||||+||++|||++|+.||.+... .............
T Consensus 343 ~~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~------- 411 (689)
T 3v5w_A 343 SKKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAV------- 411 (689)
T ss_dssp SSCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCC-------
T ss_pred CCCC----CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCC-------
Confidence 5432 246799999999999864 5799999999999999999999999974322 2111111111100
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM 828 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~ 828 (833)
.++ ...+.++.+++.+||+.||++|++ ++||++|
T Consensus 412 -~~p------~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H 450 (689)
T 3v5w_A 412 -ELP------DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES 450 (689)
T ss_dssp -CCC------TTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred -CCC------ccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence 011 123457889999999999999998 6888764
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-46 Score=435.23 Aligned_cols=438 Identities=21% Similarity=0.237 Sum_probs=379.4
Q ss_pred CCCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296 3 SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE 82 (833)
Q Consensus 3 ~~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 82 (833)
.|......+.+++++..++.+|. .-.+++++|||++|+|+++.+.+|.++++|++|+|++|+|+++.|..|.++++|++
T Consensus 2 ~c~~~~~~~~~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 80 (570)
T 2z63_A 2 PCVEVVPNITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80 (570)
T ss_dssp CSEEEETTTEEECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CccccCCCcEEEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCE
Confidence 34445567889999999999986 33468999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC-CCCcccccCCccCcccccccc
Q 003296 83 LVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG-RLPTSLASITTLSRFAANQNK 161 (833)
Q Consensus 83 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~l~~n~ 161 (833)
|+|++|.+++..|..|+++++|++|+|++|++++..+..|+++++|++|+|++|.+++ .+|..|.++++|+.|++++|+
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred EeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 9999999999999999999999999999999998877789999999999999999998 469999999999999999999
Q ss_pred ccccCChhh--hhcC----CEEecccccccccCCccCCCCCCCCEEeccccc----------------------------
Q 003296 162 FSGSVPGGI--TRFL----RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNM---------------------------- 207 (833)
Q Consensus 162 l~~~~p~~~--~~~L----~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~---------------------------- 207 (833)
+++..|..+ ...| +.|++++|.+.+..|..+... +|+.|++++|.
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred cceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 998777655 4556 899999999999888777655 79999888872
Q ss_pred ------------------------------CcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCC
Q 003296 208 ------------------------------LEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSF 255 (833)
Q Consensus 208 ------------------------------l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l 255 (833)
+.+..|..+. ++|+.|++++|.+.. +|. .+..+ +|++|++++|.+
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~-~L~~L~l~~n~~ 316 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD-FSYNF-GWQHLELVNCKF 316 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCB-CCSCC-CCSEEEEESCBC
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhh-hhccC-CccEEeeccCcc
Confidence 2233344443 678889998888763 543 45666 899999999998
Q ss_pred CCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcC--chhhcCCCcCceeeccCCcCcccCcc
Q 003296 256 TGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEI--PSQFSQLKLLSTMNISWNSLSGSIPS 333 (833)
Q Consensus 256 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~ 333 (833)
.. +|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+++.. |..+..+++|++|++++|.+.+..+.
T Consensus 317 ~~-l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 391 (570)
T 2z63_A 317 GQ-FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391 (570)
T ss_dssp SS-CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE
T ss_pred cc-cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc
Confidence 84 443 4788899999999998876655 78899999999999998765 78899999999999999999976555
Q ss_pred ccccCCCCCEEEccCCccccccC-ccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccc-cchhhhhccCC
Q 003296 334 FLSNLTNLVNLNLRQNNLNGSIP-NSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFE-GPIPTTFARLN 409 (833)
Q Consensus 334 ~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~-~~~p~~~~~l~ 409 (833)
+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+.+..|.....+. +.|++++|.++ +.+|..|..++
T Consensus 392 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp -EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred -ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 9999999999999999998766 5789999999999999999988776655443 68999999998 67899999999
Q ss_pred CCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCC
Q 003296 410 GLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK 451 (833)
Q Consensus 410 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 451 (833)
+|+.|++++|++++..|..|..+++|+.|++++|++++..|.
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 999999999999999999999999999999999999988764
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.6e-47 Score=444.61 Aligned_cols=352 Identities=20% Similarity=0.286 Sum_probs=229.2
Q ss_pred CCcCcccCCccccCCCCCCEEeccCCcCCcc-----------------CCcccc--CCCCCcEEECcCCcCCCCCCcccc
Q 003296 87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGS-----------------VPDRIG--ELSKLEVLILSANNLDGRLPTSLA 147 (833)
Q Consensus 87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~ 147 (833)
+|++++ +|.+|+++++|++|+|++|++++. +|..++ ++++|++|+|++|.+.+.+|..|+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 456665 566666666666666666666653 566666 666666666666666666666666
Q ss_pred cCCccCcccccccc-ccc-cCChhhh--------hcCCEEecccccccccCCc--cCCCCCCCCEEecccccCcccCCCC
Q 003296 148 SITTLSRFAANQNK-FSG-SVPGGIT--------RFLRNLDLSYNKLLGVIPI--DLLSHPNLQTIDLSVNMLEGSLPQN 215 (833)
Q Consensus 148 ~l~~L~~l~l~~n~-l~~-~~p~~~~--------~~L~~L~Ls~N~l~~~~~~--~~~~~~~L~~L~Ls~N~l~~~~p~~ 215 (833)
++++|+.|++++|+ +++ .+|..+. +.|++|+|++|+++ .+|. .+..+++|++|++++|.++|.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 66666666666665 665 5555442 45666666666666 4555 56666666666666666666666 4
Q ss_pred CC--cCCcEEEcCCccccCCCCccccCCCCC-CCEEECCCCCCCCCCCccccCCC--CCcEEEccCCccCCCChhhhC--
Q 003296 216 MS--PNLVRLRLGTNLLIGEIPSATFTSLEK-LTYLELDNNSFTGMIPQQLGSCR--SLTLLNLAQNELNGSLPIQLG-- 288 (833)
Q Consensus 216 ~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~-L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-- 288 (833)
+. ++|+.|++++|.+. .+|. .|..+++ |++|++++|+++ .+|..+..++ +|+.|++++|.+.+..|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPA-NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCT-TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hCCCCCCCEEECCCCccc-cccH-hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 43 56666666666655 3443 3555666 666666666666 4555555443 666666666666666666665
Q ss_pred -----CCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCC-------CCCEEEccCCccccccC
Q 003296 289 -----SLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLT-------NLVNLNLRQNNLNGSIP 356 (833)
Q Consensus 289 -----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~L~~N~l~~~~p 356 (833)
.+.+|+.|+|++|.++...+..|..+++|++|+|++|+++...+..+..+. +|+.|+|++|+++ .+|
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence 556666666666666644444455566666666666666633223333222 6666666666666 455
Q ss_pred cccc--CCCCCCEEEccCCcCCccCCCCccccc--ceeec------cccccccchhhhhccCCCCCEEecccCcCccccc
Q 003296 357 NSIT--NMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNL------SSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIP 426 (833)
Q Consensus 357 ~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 426 (833)
..+. .+++|+.|+|++|++++ +|.....+. +.|+| ++|.+.+.+|..|..+++|+.|++++|++ +.+|
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 5554 66666666666666665 454443332 45555 67889999999999999999999999999 5778
Q ss_pred hhccCCCCCCeeeCcCCcccccC
Q 003296 427 QLLAQMPTLTQLLLTNNQLSGVV 449 (833)
Q Consensus 427 ~~~~~l~~L~~L~ls~N~l~~~~ 449 (833)
..+. ++|+.|++++|++....
T Consensus 583 ~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 583 EKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp SCCC--TTCCEEECCSCTTCEEE
T ss_pred HhHh--CcCCEEECcCCCCcccc
Confidence 7765 79999999999987653
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-47 Score=438.23 Aligned_cols=427 Identities=21% Similarity=0.267 Sum_probs=313.1
Q ss_pred CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcC
Q 003296 11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAF 90 (833)
Q Consensus 11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 90 (833)
++|||++|.|+.+|.- -.++|++|||++|+|+++.+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|+|
T Consensus 3 ~~l~ls~n~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCS-CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccc-ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 5788888888888751 127888888888888888878888888888888888888887788888888888888888888
Q ss_pred cccCCccccCCCCCCEEeccCCcCCc-cCCccccCCCCCcEEECcCCcCCCCCCcccccCCcc--Cccccccccc--ccc
Q 003296 91 HGEIPKGIADYRNLTLIDLSANNLSG-SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL--SRFAANQNKF--SGS 165 (833)
Q Consensus 91 ~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~l~l~~n~l--~~~ 165 (833)
+. +|.. .+++|++|+|++|++++ .+|..|+++++|++|+|++|.+++ ..+..+++| +.|++++|.+ .+.
T Consensus 82 ~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 82 VK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred ee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccc
Confidence 84 4444 78888888888888876 367788888888888888888876 456666666 8888888887 555
Q ss_pred CChhhh----------------------------hcCCEEeccccc-------ccccCCccCCCCCCCCEEecccccCcc
Q 003296 166 VPGGIT----------------------------RFLRNLDLSYNK-------LLGVIPIDLLSHPNLQTIDLSVNMLEG 210 (833)
Q Consensus 166 ~p~~~~----------------------------~~L~~L~Ls~N~-------l~~~~~~~~~~~~~L~~L~Ls~N~l~~ 210 (833)
.|..+. ..|+.|++++|. +.+.+| .+..+++|+.|++++|.+++
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCH
Confidence 555442 224444444443 333333 44555556666665555543
Q ss_pred cCCCC-----CCcCCcEEEcCCccccCCCCcccc----CCCCCCCEEECCCCCCCCCCC-ccccCC---CCCcEEEccCC
Q 003296 211 SLPQN-----MSPNLVRLRLGTNLLIGEIPSATF----TSLEKLTYLELDNNSFTGMIP-QQLGSC---RSLTLLNLAQN 277 (833)
Q Consensus 211 ~~p~~-----~~~~L~~L~l~~n~l~~~~~~~~f----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~L~~N 277 (833)
..+.. ..++|+.|++++|.+.+.+|...| ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 22111 123677777777777766665443 6677777778877777 333 344443 56888888888
Q ss_pred ccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcc--cCccccccCCCCCEEEccCCcccccc
Q 003296 278 ELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSG--SIPSFLSNLTNLVNLNLRQNNLNGSI 355 (833)
Q Consensus 278 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~ 355 (833)
.+.... .+..+++|+.|++++|++++..|..+..+++|++|++++|++++ .+|..+..+++|++|+|++|++++.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 775432 12677888999999999988888888888899999999998886 45677888899999999999988745
Q ss_pred Cc-cccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCC
Q 003296 356 PN-SITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPT 434 (833)
Q Consensus 356 p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 434 (833)
|. .+..+++|++|++++|++++.+|...+...+.|++++|.++ .+|..+..+++|+.|++++|+|+...+..+..+++
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 54 47888899999999998887766554444567889999888 67776778889999999999988544445888888
Q ss_pred CCeeeCcCCcccccCC
Q 003296 435 LTQLLLTNNQLSGVVP 450 (833)
Q Consensus 435 L~~L~ls~N~l~~~~p 450 (833)
|+.|++++|++++..+
T Consensus 470 L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred ccEEECcCCCCcccCC
Confidence 9999999998877543
No 33
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=3.1e-48 Score=445.89 Aligned_cols=252 Identities=18% Similarity=0.239 Sum_probs=209.5
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|+++|++++|||||+++++|.+++.+|+|
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~----~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv 232 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE----SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI 232 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH----HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccch----hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence 5788899999999999999997 5899999999953221 2246789999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC--CCceeccceeeeeeC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL--KEPQIGDIELCKVID 711 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~--~~~ki~dfgl~~~~~ 711 (833)
||||+||+|.+++... ...+++.++..|+.||++||+||| +.+|+||||||+|||++.+ +.+||+|||+|+...
T Consensus 233 ~E~~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~ 308 (573)
T 3uto_A 233 YEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD 308 (573)
T ss_dssp EECCCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECC
T ss_pred EeecCCCcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEcc
Confidence 9999999999999753 346999999999999999999999 7899999999999999854 889999999999875
Q ss_pred CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
... ...+.+||+.|||||++.+..|+.++||||+||++|||++|+.||.+........ ..........
T Consensus 309 ~~~---~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~-~i~~~~~~~~-------- 376 (573)
T 3uto_A 309 PKQ---SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLR-NVKSCDWNMD-------- 376 (573)
T ss_dssp TTS---EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHH-HHHTTCCCCC--------
T ss_pred CCC---ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHH-HHHhCCCCCC--------
Confidence 443 3356789999999999999999999999999999999999999998655433222 1111111111
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
...+...+.++.+++.+||+.||++|||+.|+++|
T Consensus 377 --~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H 411 (573)
T 3uto_A 377 --DSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH 411 (573)
T ss_dssp --SGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred --cccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 11112234578899999999999999999999985
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.7e-46 Score=432.97 Aligned_cols=433 Identities=20% Similarity=0.232 Sum_probs=242.4
Q ss_pred CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
++|++|++++|.+++++ .|..+++|++|+|++|+|+++.+.+|.++++|++|+|++|++++..|..|+++++|++|+|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46777777777777652 4667777777777777777766667777777777777777777666666777777777777
Q ss_pred cCCcCccc-CCccccCCCCCCEEeccCCc-CCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccc
Q 003296 86 SGNAFHGE-IPKGIADYRNLTLIDLSANN-LSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS 163 (833)
Q Consensus 86 ~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~ 163 (833)
++|.+++. .|..|+++++|++|+|++|. +..+.+..|+++++|++|+|++|.+++..|..+..+++|+.|+++.|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 77777652 45667777777777777776 34344456777777777777777777777777777777777777766654
Q ss_pred ccCChhh---hhcCCEEecccccccccC--Cc-cCCCCCCCCEEecccccCcccCCCCC------CcCCcEEEcCCcccc
Q 003296 164 GSVPGGI---TRFLRNLDLSYNKLLGVI--PI-DLLSHPNLQTIDLSVNMLEGSLPQNM------SPNLVRLRLGTNLLI 231 (833)
Q Consensus 164 ~~~p~~~---~~~L~~L~Ls~N~l~~~~--~~-~~~~~~~L~~L~Ls~N~l~~~~p~~~------~~~L~~L~l~~n~l~ 231 (833)
.+|..+ .+.|++|++++|++.+.. |. ....+++|+.|++++|.+++..+..+ .++++.+++++|.+.
T Consensus 186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 223322 345777777777776542 11 12335677777777777654332211 145666666666654
Q ss_pred CCCC-----ccccCCCCCCCEEECCCCCCCCC-----CCccccCCCCCcEEEccCCccCCCChhhh-CCCCCCcEEEccC
Q 003296 232 GEIP-----SATFTSLEKLTYLELDNNSFTGM-----IPQQLGSCRSLTLLNLAQNELNGSLPIQL-GSLGILQVMNLQL 300 (833)
Q Consensus 232 ~~~~-----~~~f~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~ 300 (833)
+... ...+..+++|+.|++.++.+... .+..+..+++|+.|++++|.+. .+|..+ ..+++|+.|++++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence 3110 01223344455555544443321 0111222345555555555554 333333 3455555555555
Q ss_pred CcCCCcCch---hhcCCCcCceeeccCCcCcccCc--cccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcC
Q 003296 301 NKLSGEIPS---QFSQLKLLSTMNISWNSLSGSIP--SFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL 375 (833)
Q Consensus 301 N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 375 (833)
|++++.+|. .+..+++|++|++++|++++..+ ..+..+++|++|+|++|+++ .+|..+..+++|++|++++|.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 555554432 24445555555555555554322 33555555555555555555 3455555555555555555555
Q ss_pred CccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCC
Q 003296 376 SGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450 (833)
Q Consensus 376 ~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 450 (833)
++. |...+...+.|++++|++++.+ ..+++|+.|++++|+|+ .+|. ...+++|+.|++++|++++.+|
T Consensus 423 ~~l-~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 423 RVV-KTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp SCC-CTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred ccc-cchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 422 2211122344555555555432 24455555555555555 3333 2345555555555555555444
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.7e-45 Score=437.49 Aligned_cols=359 Identities=17% Similarity=0.247 Sum_probs=183.8
Q ss_pred CcCCCCCCcccCCCCCCCEEEccCCcCcc-----------------cCCcccc--CCCCCCEEeccCCcCCccCCccccC
Q 003296 64 NKFNGFLPINLGKTKALEELVLSGNAFHG-----------------EIPKGIA--DYRNLTLIDLSANNLSGSVPDRIGE 124 (833)
Q Consensus 64 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~ 124 (833)
|+|++ +|..|+++++|++|+|++|.|++ .+|..++ ++++|++|+|++|++.+.+|..|++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 44444 34445555555555555555554 1444444 5555555555555554455555555
Q ss_pred CCCCcEEECcCCc-CCC-CCCcccccCC-------ccCccccccccccccCCh--hh--hhcCCEEecccccccccCCcc
Q 003296 125 LSKLEVLILSANN-LDG-RLPTSLASIT-------TLSRFAANQNKFSGSVPG--GI--TRFLRNLDLSYNKLLGVIPID 191 (833)
Q Consensus 125 l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~l~l~~n~l~~~~p~--~~--~~~L~~L~Ls~N~l~~~~~~~ 191 (833)
+++|++|+|++|+ +++ .+|..++.++ +|+.|++++|.++ .+|. .+ ++.|+.|+|++|++. .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 5555555555554 444 4444443333 4455555555544 3443 22 233445555555444 333 4
Q ss_pred CCCCCCCCEEecccccCcccCCCCCC--cC-CcEEEcCCccccCCCCccccCCCC--CCCEEECCCCCCCCCCCccc---
Q 003296 192 LLSHPNLQTIDLSVNMLEGSLPQNMS--PN-LVRLRLGTNLLIGEIPSATFTSLE--KLTYLELDNNSFTGMIPQQL--- 263 (833)
Q Consensus 192 ~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~-L~~L~l~~n~l~~~~~~~~f~~l~--~L~~L~L~~N~l~~~~~~~~--- 263 (833)
|..+++|+.|+|++|.++ .+|..+. ++ |+.|++++|.+. .+| ..|..++ +|+.|+|++|++.+.+|...
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 444445555555555544 3443332 23 444555444443 232 2233322 24455555555444333211
Q ss_pred c--CCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCC-------CcCceeeccCCcCcccCccc
Q 003296 264 G--SCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQL-------KLLSTMNISWNSLSGSIPSF 334 (833)
Q Consensus 264 ~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-------~~L~~L~Ls~N~l~~~~~~~ 334 (833)
. .+++|+.|+|++|.+....+..+..+++|+.|+|++|+++...+..+... ++|+.|+|++|+++ .+|..
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 1 12244455555555442222222344445555555554442222222111 14445555555444 33444
Q ss_pred cc--cCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCC
Q 003296 335 LS--NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLE 412 (833)
Q Consensus 335 ~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~ 412 (833)
+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+ ++++|.+.+.+|..|..+++|+
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------------~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------------DAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------CTTCCBCCCCCCTTGGGCSSCC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------CcccccccccChHHHhcCCCCC
Confidence 43 44455555555555443 34444445555555554443 3456899999999999999999
Q ss_pred EEecccCcCccccchhccCCCCCCeeeCcCCcccccCC
Q 003296 413 VLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450 (833)
Q Consensus 413 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 450 (833)
.|+|++|+| +.+|..+. ++|+.|++++|++....+
T Consensus 810 ~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 810 QLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp EEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred EEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 999999999 67887765 699999999999976644
No 36
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=1.5e-45 Score=397.09 Aligned_cols=271 Identities=28% Similarity=0.446 Sum_probs=223.2
Q ss_pred HHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
.++++|+..+.||+|+||.||+|+..+|+.||||++.... ....+.|.+|++++++++|||||+++++|..++..+
T Consensus 36 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 111 (321)
T 2qkw_B 36 EATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES----SQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI 111 (321)
T ss_dssp CCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCC----SSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE
T ss_pred HHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccC----hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence 4556788999999999999999998889999999984321 233568999999999999999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCC--CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 632 LFYEYAPKGTLFDVLHGCLE--NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~--~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
+||||+++|+|.+++..... ..++|.++..++.|+++||+||| ..+|+||||||+||+++.++.+|++|||+++.
T Consensus 112 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~ 188 (321)
T 2qkw_B 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKK 188 (321)
T ss_dssp EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTCEE
T ss_pred EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence 99999999999999976432 35899999999999999999999 78999999999999999999999999999987
Q ss_pred eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc-----cHHHHHHHhhcccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN-----ELAKWVLRNSAQQDKLDH 784 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~-----~~~~~~~~~~~~~~~~~~ 784 (833)
..............||+.|+|||++.+..++.++|||||||++|||+||+.||.+.. ....|....... ..+..
T Consensus 189 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 267 (321)
T 2qkw_B 189 GTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNN-GQLEQ 267 (321)
T ss_dssp CSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTT-TCCCS
T ss_pred cccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcccc-ccHHH
Confidence 643332223345679999999999988899999999999999999999999997432 233343322222 33444
Q ss_pred cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.+++...... ....+.++.+++.+||+.||++|||+.||+++|+.+
T Consensus 268 ~~~~~~~~~~--~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 313 (321)
T 2qkw_B 268 IVDPNLADKI--RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYA 313 (321)
T ss_dssp SSSSSCTTCS--CHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred hcChhhcccc--CHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 4454443222 235677899999999999999999999999999875
No 37
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=1.8e-45 Score=397.42 Aligned_cols=278 Identities=28% Similarity=0.490 Sum_probs=225.7
Q ss_pred hhHHHHHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296 547 IDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626 (833)
Q Consensus 547 ~~~~~~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~ 626 (833)
.++. ...++|...+.||+|+||.||+|...+|+.||||++.... .......|.+|++++++++|||||+++++|..
T Consensus 23 ~~~~-~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~ 98 (326)
T 3uim_A 23 RELQ-VASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEER---TQGGELQFQTEVEMISMAVHRNLLRLRGFCMT 98 (326)
T ss_dssp HHHH-TTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC--------CCCHHHHHHHGGGTCCCTTBCCCCEEECC
T ss_pred HHHH-HHhhccccceeEecCCCcEEEEEEecCCCEEEEEEecccc---CchHHHHHHHHHHHHHhccCCCccceEEEEec
Confidence 3444 6778899999999999999999998889999999995322 12234579999999999999999999999999
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCC--CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLE--NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI 704 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~--~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df 704 (833)
++..++||||+++|+|.++++.... ..++|..+..++.|++.||+|||+.+.++|+||||||+||+++.++.+||+||
T Consensus 99 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Df 178 (326)
T 3uim_A 99 PTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDF 178 (326)
T ss_dssp SSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCC
T ss_pred CCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccC
Confidence 9999999999999999999986432 35999999999999999999999544449999999999999999999999999
Q ss_pred eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCccc-------CCccHHHHHHHhhc
Q 003296 705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN-------QGNELAKWVLRNSA 777 (833)
Q Consensus 705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~-------~~~~~~~~~~~~~~ 777 (833)
|+++....... .......||+.|+|||++.+..++.++|||||||++|||+||+.||. .......|+.....
T Consensus 179 g~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 257 (326)
T 3uim_A 179 GLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLK 257 (326)
T ss_dssp SSCEECCSSSS-CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTS
T ss_pred ccccccCcccc-cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhh
Confidence 99987753332 22345679999999999988889999999999999999999999995 12233444433222
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. .......+....... ....+.++.+++.+||+.||++|||+.||+++|+..
T Consensus 258 ~-~~~~~~~~~~~~~~~--~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 258 E-KKLEALVDVDLQGNY--KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp S-CCSTTSSCTTCTTSC--CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred c-hhhhhhcChhhcccc--CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 2 334444444443322 245678899999999999999999999999999864
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-43 Score=418.19 Aligned_cols=434 Identities=21% Similarity=0.213 Sum_probs=223.5
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 89 (833)
-++.+|++..|+.||. .-.+++++|||++|+|+++.+.+|.++++|++|||++|+|+++.|.+|.++++|++|+|++|+
T Consensus 33 ~~~~~c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 33 NITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TTEEECTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCEEECCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3455666666666653 112356666666666666655566666666666666666665555566666666666666666
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCC-CCcccccCCccCccccccccccccCCh
Q 003296 90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGR-LPTSLASITTLSRFAANQNKFSGSVPG 168 (833)
Q Consensus 90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~l~~n~l~~~~p~ 168 (833)
|+++.+..|.++++|++|+|++|+|+++.+..|+++++|++|+|++|.+++. .|..+..+++|+.|++++|++++..|.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 6655555566666666666666666655555566666666666666666542 355555566666666666666555444
Q ss_pred hhh--h----cCCEEecccccccccCCccCCC------------------------------------------------
Q 003296 169 GIT--R----FLRNLDLSYNKLLGVIPIDLLS------------------------------------------------ 194 (833)
Q Consensus 169 ~~~--~----~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------ 194 (833)
.+. . .+..++++.|.+..+.+..+..
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 331 1 1224445555444332221111
Q ss_pred ---------------------------------CCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCC
Q 003296 195 ---------------------------------HPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTS 241 (833)
Q Consensus 195 ---------------------------------~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~ 241 (833)
..+++.+++..|.+....+..+...++.|++.+|.+.. ++. ..
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~---~~ 347 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPT---LK 347 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS-CCC---CB
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC-cCc---cc
Confidence 11222222222222221111122334444444444322 111 12
Q ss_pred CCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCC--CChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCce
Q 003296 242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG--SLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLST 319 (833)
Q Consensus 242 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 319 (833)
+..|+.++++.|.+... ..+..+++|+.|++++|.+.. ..+..+..+.+|+.++++.|.+... +..|..+++|+.
T Consensus 348 l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~ 424 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEH 424 (635)
T ss_dssp CTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCE
T ss_pred chhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccc
Confidence 33444444444443322 123345666666666666532 2344445555666666666555432 334455555666
Q ss_pred eeccCCcCcccCc-cccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCc-cCCCCccccc--ceeecccc
Q 003296 320 MNISWNSLSGSIP-SFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSG-TIPMMPPRLQ--IALNLSSN 395 (833)
Q Consensus 320 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~--~~L~Ls~N 395 (833)
++++.|+.....+ ..|..+++++.++++.|.+.+..+..+..+++|+.|+|++|.+.. ..|.....+. ..|+|++|
T Consensus 425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N 504 (635)
T 4g8a_A 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504 (635)
T ss_dssp EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence 6665555443332 344555555666666666555555555555566666666554322 2333322222 44556666
Q ss_pred ccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCC
Q 003296 396 LFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK 451 (833)
Q Consensus 396 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 451 (833)
++++..|..|.++++|++|+|++|+|++..|..|..+++|+.|++++|+|++..|.
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 66555555566666666666666666555555555566666666666666555543
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-44 Score=420.07 Aligned_cols=436 Identities=21% Similarity=0.241 Sum_probs=333.1
Q ss_pred CCCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296 3 SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE 82 (833)
Q Consensus 3 ~~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 82 (833)
.|..+...+.+++++|.++++|. .-.++|++|||++|+|+++.+.+|.++++|++|+|++|+|+++.|..|.++++|++
T Consensus 26 ~~~~~~~~~~l~ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 26 TPFSNELESMVDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp -------CCEEECTTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cccccCCCcEEEcCCCCCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 34556667999999999999985 22489999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCcEEECcCCcCCCCCCcccccCCcc--Ccccccc
Q 003296 83 LVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLASITTL--SRFAANQ 159 (833)
Q Consensus 83 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~l~l~~ 159 (833)
|+|++|.|+. +|.. .+++|++|+|++|++++. .|..|+++++|++|+|++|.+++. .+..+++| +.|+++.
T Consensus 105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 9999999995 5555 899999999999999974 468999999999999999999874 45555555 9999999
Q ss_pred ccc--cccCChhhhh---cCCEEecccccccccCCc-cCCCCCCCCEEeccccc--------------------------
Q 003296 160 NKF--SGSVPGGITR---FLRNLDLSYNKLLGVIPI-DLLSHPNLQTIDLSVNM-------------------------- 207 (833)
Q Consensus 160 n~l--~~~~p~~~~~---~L~~L~Ls~N~l~~~~~~-~~~~~~~L~~L~Ls~N~-------------------------- 207 (833)
|.+ ++..|..+.. ..-.+++++|.+.+.++. .+..+++|+.|++++|.
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 999 7777765522 111456667766654433 23445566666666653
Q ss_pred --Cccc-----CCCCCCcCCcEEEcCCccccCCCCcccc----CCCCCCCEEECCCCCCCCCCC-ccccC---CCCCcEE
Q 003296 208 --LEGS-----LPQNMSPNLVRLRLGTNLLIGEIPSATF----TSLEKLTYLELDNNSFTGMIP-QQLGS---CRSLTLL 272 (833)
Q Consensus 208 --l~~~-----~p~~~~~~L~~L~l~~n~l~~~~~~~~f----~~l~~L~~L~L~~N~l~~~~~-~~~~~---l~~L~~L 272 (833)
+.+. .+....++|++|++++|.+.+.+|...| ..++.|+.++++.|.+ .+| ..+.. ..+|+.|
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 2211 1111123677778877777766665543 4555555666666665 223 22222 2568888
Q ss_pred EccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCccc--CccccccCCCCCEEEccCCc
Q 003296 273 NLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGS--IPSFLSNLTNLVNLNLRQNN 350 (833)
Q Consensus 273 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~ 350 (833)
++++|.+.... ....+++|+.|++++|.+++..|..|..+++|++|++++|++++. +|..|..+++|+.|+|++|+
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 88888875322 126788999999999999998899999999999999999999873 35678899999999999999
Q ss_pred cccccC-ccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhc
Q 003296 351 LNGSIP-NSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLL 429 (833)
Q Consensus 351 l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 429 (833)
+++.+| ..+..+++|++|++++|++++.+|...+...+.|++++|+++ .+|..+..+++|+.|++++|+|++..+..+
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 493 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVF 493 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTST
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHH
Confidence 988454 458889999999999999988777655444568999999998 566666699999999999999996555558
Q ss_pred cCCCCCCeeeCcCCcccccCC
Q 003296 430 AQMPTLTQLLLTNNQLSGVVP 450 (833)
Q Consensus 430 ~~l~~L~~L~ls~N~l~~~~p 450 (833)
..+++|+.|++++|++.|..|
T Consensus 494 ~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTCTTCCCEECCSCCBCCCHH
T ss_pred hcCCCCCEEEecCCCcCCCcc
Confidence 899999999999999987654
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-44 Score=425.18 Aligned_cols=407 Identities=18% Similarity=0.294 Sum_probs=266.6
Q ss_pred CCCCEEECCCCCCCC-cc-cccCCCCCCEEECCCCCCC------C---------------------------ccccccc-
Q 003296 8 DGLKLLNFSKNELVS-LP-TFNGFAGLEVLDFSSNNLN------G---------------------------NINLQFD- 51 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~-i~-~f~~l~~L~~L~Ls~N~l~------~---------------------------~~~~~f~- 51 (833)
..++.|+|++|.+.+ +| +|..+++|++|||++|++. + ..+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 578899999999987 54 6899999999999999651 1 0000000
Q ss_pred ------------------CCCCCCEEeCc--CCcCCCCCCcccCCCCCCCEEEccCCcCccc-----------------C
Q 003296 52 ------------------ELVSLKSLNLS--KNKFNGFLPINLGKTKALEELVLSGNAFHGE-----------------I 94 (833)
Q Consensus 52 ------------------~l~~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~ 94 (833)
....++.+.+. +|++++ +|..|+++++|++|+|++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 11122222222 456666 566666677777777777776664 6
Q ss_pred Ccccc--CCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCc-CCC-CCCcccccC------CccCccccccccccc
Q 003296 95 PKGIA--DYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANN-LDG-RLPTSLASI------TTLSRFAANQNKFSG 164 (833)
Q Consensus 95 p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~l~l~~n~l~~ 164 (833)
|..++ ++++|++|+|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..++.+ ++|+.|++++|+++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 66666 67777777777777666666667777777777777776 666 666666655 66777777777766
Q ss_pred cCCh--hh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC--cC-CcEEEcCCccccCCCCcc
Q 003296 165 SVPG--GI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PN-LVRLRLGTNLLIGEIPSA 237 (833)
Q Consensus 165 ~~p~--~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~-L~~L~l~~n~l~~~~~~~ 237 (833)
.+|. .+ ++.|+.|+|++|++.|.+| .+..+++|++|+|++|.++ .+|..+. ++ |+.|++++|.+. .+|.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~- 394 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN- 394 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS-
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch-
Confidence 5555 44 3456777777777766666 6666667777777777766 5555554 44 777777777655 3443
Q ss_pred ccCCC--CCCCEEECCCCCCCCCCCcccc-------CCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCc
Q 003296 238 TFTSL--EKLTYLELDNNSFTGMIPQQLG-------SCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIP 308 (833)
Q Consensus 238 ~f~~l--~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 308 (833)
.|..+ ++|++|++++|++++..|..+. .+++|+.|+|++|.+....+..+..+++|+.|+|++|+++...+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 34433 3677777777777777776666 66677777777777774444445567777777777777774333
Q ss_pred hhhcCCC-------cCceeeccCCcCcccCccccc--cCCCCCEEEccCCccccccCccccCCCCCCEEEc------cCC
Q 003296 309 SQFSQLK-------LLSTMNISWNSLSGSIPSFLS--NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQL------GGN 373 (833)
Q Consensus 309 ~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L------~~N 373 (833)
..+.... +|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 3333332 6777777777777 5566655 67777777777777776 6777777777777777 446
Q ss_pred cCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEecccCcCcccc
Q 003296 374 QLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEI 425 (833)
Q Consensus 374 ~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 425 (833)
++.+.+|.....+. +.|+|++|.+ +.+|..+. ++|+.||+++|++....
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 66666666555443 5677777777 56666655 68999999999876543
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-44 Score=431.30 Aligned_cols=406 Identities=20% Similarity=0.316 Sum_probs=341.8
Q ss_pred CCCCEEECCCCCCCC-cc-cccCCCCCCEEEC-CCCCCCCc---------------------------------------
Q 003296 8 DGLKLLNFSKNELVS-LP-TFNGFAGLEVLDF-SSNNLNGN--------------------------------------- 45 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~-i~-~f~~l~~L~~L~L-s~N~l~~~--------------------------------------- 45 (833)
..++.|+|++|.|.+ +| +|..+++|++||| ++|.++|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 578899999999997 65 6999999999999 77754332
Q ss_pred -------------------------------------ccccccCCCCCCEEeCcCCcCCC-----------------CCC
Q 003296 46 -------------------------------------INLQFDELVSLKSLNLSKNKFNG-----------------FLP 71 (833)
Q Consensus 46 -------------------------------------~~~~f~~l~~L~~L~Ls~N~l~~-----------------~~p 71 (833)
+|..|+++++|++|+|++|+|++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 67789999999999999999998 378
Q ss_pred cccC--CCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCc-CCc-cCCccccCCC-------CCcEEECcCCcCCC
Q 003296 72 INLG--KTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANN-LSG-SVPDRIGELS-------KLEVLILSANNLDG 140 (833)
Q Consensus 72 ~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~-------~L~~L~Ls~N~l~~ 140 (833)
..++ ++++|++|+|++|.+.+.+|..|+++++|+.|+|++|+ +++ .+|..|+.++ +|++|+|++|.++
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 8887 99999999999999999999999999999999999998 998 7888776665 9999999999999
Q ss_pred CCCc--ccccCCccCccccccccccccCChhh--hhcCCEEecccccccccCCccCCCCCC-CCEEecccccCcccCCCC
Q 003296 141 RLPT--SLASITTLSRFAANQNKFSGSVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPN-LQTIDLSVNMLEGSLPQN 215 (833)
Q Consensus 141 ~~p~--~~~~l~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~-L~~L~Ls~N~l~~~~p~~ 215 (833)
.+|. .|.++++|+.|++++|+++ .+| .+ ++.|+.|+|++|++. .+|..+..+++ |+.|+|++|.++ .+|..
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 7888 9999999999999999999 777 44 567999999999999 78888999999 999999999999 67766
Q ss_pred CC----cCCcEEEcCCccccCCCCcc--ccC--CCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhh
Q 003296 216 MS----PNLVRLRLGTNLLIGEIPSA--TFT--SLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL 287 (833)
Q Consensus 216 ~~----~~L~~L~l~~n~l~~~~~~~--~f~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 287 (833)
+. ++|+.|++++|.+.+.+|.. .+. .+++|+.|+|++|+++...+..+..+++|+.|+|++|++. .+|..+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 54 34999999999998755421 122 3458999999999999655555668999999999999999 555544
Q ss_pred CC--------CCCCcEEEccCCcCCCcCchhhc--CCCcCceeeccCCcCcccCccccccCCCCCEEEccC------Ccc
Q 003296 288 GS--------LGILQVMNLQLNKLSGEIPSQFS--QLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQ------NNL 351 (833)
Q Consensus 288 ~~--------l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~------N~l 351 (833)
.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 33 238999999999999 6777776 89999999999999998 788999999999999976 888
Q ss_pred ccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccC
Q 003296 352 NGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQ 431 (833)
Q Consensus 352 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 431 (833)
.+.+|..|.++++|+.|+|++|++ +.+|... . ++|+.|||++|++....+..+..
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l----------------------~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL----------------------T--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC----------------------C--SSSCEEECCSCTTCEEECGGGHH
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhh----------------------c--CCCCEEECCCCCCCccChHHccc
Confidence 889999999999999999999998 5665432 1 36777777777776666666655
Q ss_pred CCCCCeeeCcCCccc
Q 003296 432 MPTLTQLLLTNNQLS 446 (833)
Q Consensus 432 l~~L~~L~ls~N~l~ 446 (833)
...+..+.|.+|++.
T Consensus 850 ~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 850 YIEAGMYVLLYDKTQ 864 (876)
T ss_dssp HHHTTCCEEECCTTS
T ss_pred cccchheeecCCCcc
Confidence 555556666666554
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-44 Score=418.65 Aligned_cols=440 Identities=18% Similarity=0.211 Sum_probs=366.4
Q ss_pred CCCCCCCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCC-CCcccCCCCC
Q 003296 3 SCGGIDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF-LPINLGKTKA 79 (833)
Q Consensus 3 ~~~~l~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~ 79 (833)
+++++++|++|++++|.+++++ +|..+++|++|||++|+++++.+..|+++++|++|+|++|.+++. .|..|+.+++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 4688999999999999999974 599999999999999999999998899999999999999999974 4678999999
Q ss_pred CCEEEccCCc-CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccc
Q 003296 80 LEELVLSGNA-FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAAN 158 (833)
Q Consensus 80 L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~ 158 (833)
|++|+|++|. +....+..|.++++|++|+|++|++++..|..|+.+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence 9999999999 554555789999999999999999999999999999999999999999875444445679999999999
Q ss_pred cccccccC--Ch---hhhhcCCEEecccccccccCCc----cCCCCCCCCEEecccccCcccCCC--------CCCcCCc
Q 003296 159 QNKFSGSV--PG---GITRFLRNLDLSYNKLLGVIPI----DLLSHPNLQTIDLSVNMLEGSLPQ--------NMSPNLV 221 (833)
Q Consensus 159 ~n~l~~~~--p~---~~~~~L~~L~Ls~N~l~~~~~~----~~~~~~~L~~L~Ls~N~l~~~~p~--------~~~~~L~ 221 (833)
+|++++.. |. .....|+.|++++|++.+..+. .+..+++|+.+++++|.+.+.... ...++++
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 99998742 11 2356799999999998765443 345678999999999998764211 1126889
Q ss_pred EEEcCCccccCCCC----ccccCCCCCCCEEECCCCCCCCCCCccc-cCCCCCcEEEccCCccCCCChh---hhCCCCCC
Q 003296 222 RLRLGTNLLIGEIP----SATFTSLEKLTYLELDNNSFTGMIPQQL-GSCRSLTLLNLAQNELNGSLPI---QLGSLGIL 293 (833)
Q Consensus 222 ~L~l~~n~l~~~~~----~~~f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L 293 (833)
.|.+.++.+..... +..+...++|+.|++++|.+.. +|..+ ..+++|++|+|++|++.+..|. .++.+++|
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 363 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence 99998886432110 1112335789999999999984 45544 6899999999999999987654 37889999
Q ss_pred cEEEccCCcCCCcCc--hhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEcc
Q 003296 294 QVMNLQLNKLSGEIP--SQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLG 371 (833)
Q Consensus 294 ~~L~L~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 371 (833)
+.|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|+|++|+++. +|..+ .++|++|+|+
T Consensus 364 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls 439 (549)
T 2z81_A 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVS 439 (549)
T ss_dssp CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECC
T ss_pred cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECC
Confidence 999999999997643 56889999999999999999 678889999999999999999984 44333 2689999999
Q ss_pred CCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCC
Q 003296 372 GNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK 451 (833)
Q Consensus 372 ~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 451 (833)
+|++++.++. . ...+.|++++|+++ .+|. ...+++|++||+++|++++.+|..+..+++|+.|++++|++.|..|.
T Consensus 440 ~N~l~~~~~~-l-~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 440 NNNLDSFSLF-L-PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp SSCCSCCCCC-C-TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CCChhhhccc-C-ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 9999976432 2 22367999999998 5665 46789999999999999999999999999999999999999988773
No 43
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=6.2e-45 Score=387.19 Aligned_cols=250 Identities=22% Similarity=0.311 Sum_probs=208.6
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+.++++++|||||+++++|..++..++|
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 95 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ----QQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV 95 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGG----GCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecc----cccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence 4688899999999999999996 58999999998422 233457799999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++... .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 96 ~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 169 (297)
T 3fxz_A 96 MEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE 169 (297)
T ss_dssp EECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCc
Confidence 9999999999999853 5899999999999999999999 789999999999999999999999999999877544
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. .....+||+.|+|||++.+..++.++|||||||++|||+||+.||.+.................. .
T Consensus 170 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~--------~-- 237 (297)
T 3fxz_A 170 QS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPEL--------Q-- 237 (297)
T ss_dssp TC--CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCC--------S--
T ss_pred cc--ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCC--------C--
Confidence 32 23457899999999999999999999999999999999999999986554333222211110000 0
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.....+..+.+++.+||+.||++|||++|++++
T Consensus 238 --~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 270 (297)
T 3fxz_A 238 --NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH 270 (297)
T ss_dssp --CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred --CccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 011234567899999999999999999999875
No 44
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=8.3e-45 Score=398.21 Aligned_cols=258 Identities=19% Similarity=0.242 Sum_probs=209.1
Q ss_pred HhcCCccccccCcccEEEEEEc--------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296 555 AVANPLNVELKTRFSTYYKAVM--------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL 625 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~ 625 (833)
++|+..+.||+|+||.||+|.. .++..||||+++... .....+.|.+|+++++++ +|||||+++++|.
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 157 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 157 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC---BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc---CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc
Confidence 4677889999999999999985 245679999995321 122356799999999999 8999999999999
Q ss_pred cCCceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296 626 ASDSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI 691 (833)
Q Consensus 626 ~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni 691 (833)
.++..|+||||+++|+|.+++.... ...++|.++..++.|+++||+||| +.+|+||||||+||
T Consensus 158 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NI 234 (370)
T 2psq_A 158 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNV 234 (370)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhE
Confidence 9999999999999999999998643 135899999999999999999999 78999999999999
Q ss_pred eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296 692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK 770 (833)
Q Consensus 692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~ 770 (833)
|++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... +
T Consensus 235 ll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~-~ 313 (370)
T 2psq_A 235 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE-E 313 (370)
T ss_dssp EECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-G
T ss_pred EECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHH-H
Confidence 999999999999999987654433223345678899999999999899999999999999999999 99999754322 1
Q ss_pred HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
..... ...... ... ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 314 ~~~~~-~~~~~~------~~~------~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~i 362 (370)
T 2psq_A 314 LFKLL-KEGHRM------DKP------ANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 362 (370)
T ss_dssp HHHHH-HTTCCC------CCC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHH-hcCCCC------CCC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111 110100 011 12234678999999999999999999999999875
No 45
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=8.8e-45 Score=390.91 Aligned_cols=259 Identities=22% Similarity=0.287 Sum_probs=205.6
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc----e
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS----A 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~----~ 630 (833)
..|+..+.||+|+||.||+|+.. |+.||||++.... .....+.+|+.++++++|||||++++++..... .
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 97 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-----KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL 97 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-----hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceE
Confidence 45778899999999999999874 8999999994221 123456779999999999999999999987543 6
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC----------CeeecCCCccceeeCCCCCce
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN----------PILLLDLSTRNIFLKSLKEPQ 700 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~----------~iiHrdlk~~Nill~~~~~~k 700 (833)
++|||||++|+|.++++. ..++|..+..++.|+++||+||| +. +|+||||||+|||++.++.+|
T Consensus 98 ~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~k 171 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKA---NVVSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTAC 171 (322)
T ss_dssp EEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCEE
T ss_pred EEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeEE
Confidence 999999999999999985 35999999999999999999999 66 999999999999999999999
Q ss_pred eccceeeeeeCCCCCCCccccccccccccccccccC-----CcccccCcchhhHHHHHHHHhCCCcccCCcc--------
Q 003296 701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-----MRVTMAGNVYSFGVILLELLTGKTAVNQGNE-------- 767 (833)
Q Consensus 701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~-------- 767 (833)
|+|||+++...............||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+...
T Consensus 172 L~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~ 251 (322)
T 3soc_A 172 IADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEE 251 (322)
T ss_dssp ECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHH
T ss_pred EccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhh
Confidence 999999988765443333345789999999999876 4577899999999999999999999974321
Q ss_pred -------HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 768 -------LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 768 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+....... . ..+.... .......+.++.+++.+||+.||++|||++||+++|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~--~----~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l 316 (322)
T 3soc_A 252 EIGQHPSLEDMQEVVVHK--K----KRPVLRD-YWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQM 316 (322)
T ss_dssp HHCSSCCHHHHHHHHTTS--C----CCCCCCG-GGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred hhccCCchhhhhhhhhcc--c----CCCCccc-cccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11111111000 0 0111111 011123456789999999999999999999999999876
No 46
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=4.7e-44 Score=382.84 Aligned_cols=278 Identities=26% Similarity=0.422 Sum_probs=221.7
Q ss_pred hhHHHHHHHhcCCc------cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccc
Q 003296 547 IDFTKAMEAVANPL------NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTP 620 (833)
Q Consensus 547 ~~~~~~~~~~~~~~------~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~ 620 (833)
.++. .++..|+.. +.||+|+||.||+|.. +++.||||++............+.|.+|++++++++||||+++
T Consensus 18 ~~l~-~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 95 (307)
T 2nru_A 18 YELK-NVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVEL 95 (307)
T ss_dssp HHHH-HHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred HHHH-HHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 4454 777888776 8899999999999987 6899999998533222222335689999999999999999999
Q ss_pred eEEEecCCceEEEEeeCCCCChhhhhhcCC-CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296 621 LAYVLASDSAYLFYEYAPKGTLFDVLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP 699 (833)
Q Consensus 621 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ 699 (833)
++++...+..++||||+++|+|.+++.... ...++|..+..++.|+++||+||| +.+|+||||||+||+++.++.+
T Consensus 96 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~ 172 (307)
T 2nru_A 96 LGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTA 172 (307)
T ss_dssp EEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCE
T ss_pred EEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEEcCCCcE
Confidence 999999999999999999999999997432 346999999999999999999999 7899999999999999999999
Q ss_pred eeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHhh
Q 003296 700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRNS 776 (833)
Q Consensus 700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~~ 776 (833)
|++|||+++...............||+.|+|||++.+ .++.++|||||||++|||++|+.||..... ...+.....
T Consensus 173 kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~ 251 (307)
T 2nru_A 173 KISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIE 251 (307)
T ss_dssp EECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHH
T ss_pred EEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhh
Confidence 9999999987654332222344679999999998764 589999999999999999999999975332 222222222
Q ss_pred cccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
.....+...++...... ....+..+.+++.+||+.||++|||++||+++|++++
T Consensus 252 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~ 305 (307)
T 2nru_A 252 DEEKTIEDYIDKKMNDA---DSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 305 (307)
T ss_dssp TTSCCHHHHSCSSCSCC---CHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred hhhhhhhhhcccccccc---chHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 22222333333333222 2345678889999999999999999999999999874
No 47
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=3.2e-44 Score=387.38 Aligned_cols=251 Identities=19% Similarity=0.216 Sum_probs=208.0
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|++++++++|||||++++++...+..|+|
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILR-KEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEe-HHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 46888899999999999999974 79999999994 32222344567899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus 84 ~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 158 (337)
T 1o6l_A 84 MEYANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD 158 (337)
T ss_dssp EECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred EeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccC
Confidence 999999999999976 346899999999999999999999 789999999999999999999999999999864322
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. .....+||+.|||||++.+..++.++||||+||++|||++|+.||.+.... ........... .++.
T Consensus 159 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-~~~~~i~~~~~--------~~p~- 226 (337)
T 1o6l_A 159 GA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE-RLFELILMEEI--------RFPR- 226 (337)
T ss_dssp TC--CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCC--------CCCT-
T ss_pred CC--cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH-HHHHHHHcCCC--------CCCC-
Confidence 21 235678999999999999999999999999999999999999999754432 22211111100 0111
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~ 828 (833)
..+.++.+++.+||+.||++|| +++||++|
T Consensus 227 -----~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h 261 (337)
T 1o6l_A 227 -----TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261 (337)
T ss_dssp -----TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred -----CCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence 1234678999999999999999 89999875
No 48
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.2e-44 Score=394.25 Aligned_cols=256 Identities=18% Similarity=0.224 Sum_probs=209.0
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhh--ccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQ--LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
.+.|+..+.||+|+||.||+|... +|+.||||++........ ....+.+.+|++++++++|||||+++++|.+++..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 456888899999999999999974 799999999953322111 12357899999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC----Cceecccee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK----EPQIGDIEL 706 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~----~~ki~dfgl 706 (833)
|+||||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 91 ~lv~e~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~ 165 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGL 165 (361)
T ss_dssp EEEEECCCSCBHHHHHTT--CSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSS
T ss_pred EEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCC
Confidence 999999999999999975 456999999999999999999999 78999999999999998776 799999999
Q ss_pred eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296 707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL 786 (833)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (833)
++...... .....+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+...... .......
T Consensus 166 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~-~~~i~~~-------- 233 (361)
T 2yab_A 166 AHEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET-LANITAV-------- 233 (361)
T ss_dssp CEECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH-HHHHHTT--------
T ss_pred ceEcCCCC---ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhc--------
Confidence 98875433 22457899999999999988999999999999999999999999976543222 1111111
Q ss_pred cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
........+...+.++.+++.+||+.||++|||+.|+++|
T Consensus 234 --~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h 273 (361)
T 2yab_A 234 --SYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (361)
T ss_dssp --CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred --CCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0001111122334578899999999999999999999864
No 49
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=391.91 Aligned_cols=251 Identities=20% Similarity=0.269 Sum_probs=197.8
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
.+.|+..+.||+|+||.||+|.. .+|+.||||++..... ....+.+.+|++++++++|||||++++++...+..++
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~---~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~l 85 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTL---GSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFM 85 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC------CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEcccc---chHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEE
Confidence 45788889999999999999996 5899999999953221 1234679999999999999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
|||||++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+||++++++.+||+|||++.....
T Consensus 86 v~E~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 160 (347)
T 3zgw_A 86 VLEYCPGGELFDYIIS--QDRLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKG 160 (347)
T ss_dssp EEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC---
T ss_pred EEeCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccC
Confidence 9999999999999976 346999999999999999999999 78999999999999999999999999999876543
Q ss_pred CCCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
... ....+.+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+..... ........... .+
T Consensus 161 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~-~~~~i~~~~~~--------~p 230 (347)
T 3zgw_A 161 NKD-YHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMA-LYKKIMRGKYD--------VP 230 (347)
T ss_dssp ------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCC--------CC
T ss_pred CCC-ccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHcCCCC--------CC
Confidence 321 12345789999999999988775 899999999999999999999997654322 22111111110 11
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
. ..+.++.+++.+||+.||++|||++|++++
T Consensus 231 ~------~~s~~~~~li~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 231 K------WLSPSSILLLQQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp T------TCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred C------CCCHHHHHHHHHHcccCHhHCcCHHHHhcC
Confidence 1 123467789999999999999999999875
No 50
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=1.3e-44 Score=389.40 Aligned_cols=249 Identities=19% Similarity=0.253 Sum_probs=205.4
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
.+|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+.+|++++++++|||||++++++..++..|+|
T Consensus 15 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 15 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQ--LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhc--CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 3577889999999999999997 689999999994321 1122346789999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||++|+|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus 93 ~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 167 (328)
T 3fe3_A 93 MEYASGGEVFDYLVA--HGRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG 167 (328)
T ss_dssp ECCCTTCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS
T ss_pred EECCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCC
Confidence 999999999999976 346899999999999999999999 789999999999999999999999999999866433
Q ss_pred CCCCccccccccccccccccccCCccc-ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVT-MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
. .....+||+.|+|||++.+..++ .++||||+||++|||++|+.||.+... ............. .+.
T Consensus 168 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~i~~~~~~--------~p~ 235 (328)
T 3fe3_A 168 G---KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL-KELRERVLRGKYR--------IPF 235 (328)
T ss_dssp C---GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHCCCC--------CCT
T ss_pred C---ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH-HHHHHHHHhCCCC--------CCC
Confidence 2 33567899999999999887775 899999999999999999999975442 2222211111110 000
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..+.++.+++.+||+.||++|||++|+++|
T Consensus 236 ------~~s~~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 236 ------YMSTDCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp ------TSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred ------CCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 123467899999999999999999999875
No 51
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.3e-44 Score=386.63 Aligned_cols=258 Identities=23% Similarity=0.305 Sum_probs=199.9
Q ss_pred HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
..+|+..+.||+|+||.||+|+. +|+.||||++..... .....++|.+|++++++++|||||++++++...+..++|
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDF--HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV 112 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCC--SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence 35677889999999999999987 689999999853221 122346799999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeCCCCCceeccceeeeee
Q 003296 634 YEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
|||+++|+|.++++.... ..+++..+..++.|+++||+||| +.+ |+||||||+||+++.++.+||+|||+++..
T Consensus 113 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~ 189 (309)
T 3p86_A 113 TEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLK 189 (309)
T ss_dssp EECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC-----
T ss_pred EecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCccc
Confidence 999999999999986321 24899999999999999999999 667 999999999999999999999999999865
Q ss_pred CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV 790 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (833)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+...... ........... ..
T Consensus 190 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~-~~~~~~~~~~~------~~ 260 (309)
T 3p86_A 190 ASTFL--SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQV-VAAVGFKCKRL------EI 260 (309)
T ss_dssp --------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHH-HHHHHHSCCCC------CC
T ss_pred ccccc--ccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhcCCCC------CC
Confidence 43221 22456899999999999998999999999999999999999999975443222 11111110000 01
Q ss_pred cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. ...+.++.+++.+||+.||++|||++|+++.|+.+
T Consensus 261 ~------~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~ 296 (309)
T 3p86_A 261 P------RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPL 296 (309)
T ss_dssp C------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred C------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1 12234678999999999999999999999999864
No 52
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.6e-45 Score=388.72 Aligned_cols=259 Identities=23% Similarity=0.311 Sum_probs=206.7
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|...+.||+|+||.||+|.. .+|+.||+|++.... ....+.|.+|++++++++|||||++++++.+++..++|
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~----~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 85 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFD----EETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI 85 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCC----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEE
Confidence 4577789999999999999997 479999999984322 22357899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.++++.. ...++|.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 86 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 161 (310)
T 3s95_A 86 TEYIKGGTLRGIIKSM-DSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDE 161 (310)
T ss_dssp EECCTTCBHHHHHHHC-CTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC--
T ss_pred EEecCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceecccc
Confidence 9999999999999864 346999999999999999999999 788999999999999999999999999999876433
Q ss_pred CCCC------------ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296 714 KSTG------------SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK 781 (833)
Q Consensus 714 ~~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 781 (833)
.... .....+||+.|+|||++.+..++.++|||||||++|||++|..|+........ .....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~------~~~~~ 235 (310)
T 3s95_A 162 KTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTM------DFGLN 235 (310)
T ss_dssp ------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCT------TSSBC
T ss_pred cccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHH------HHhhh
Confidence 2110 11246799999999999999999999999999999999999999864221000 00000
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
.....+.... ...+.++.+++.+||+.||++|||+.|+++.|+++|
T Consensus 236 ~~~~~~~~~~------~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~ 281 (310)
T 3s95_A 236 VRGFLDRYCP------PNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLR 281 (310)
T ss_dssp HHHHHHHTCC------TTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hhccccccCC------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 0000000000 112346788999999999999999999999998763
No 53
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2e-44 Score=387.25 Aligned_cols=251 Identities=15% Similarity=0.187 Sum_probs=207.3
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|...+.||+|+||.||+|+.. +|+.||+|.+.... .....+.+|++++++++|||||++++++.+.+..++|
T Consensus 5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 79 (321)
T 1tki_A 5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-----TDQVLVKKEISILNIARHRNILHLHESFESMEELVMI 79 (321)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-----ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence 56788899999999999999974 78999999985321 1245789999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC--CCCceeccceeeeeeC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS--LKEPQIGDIELCKVID 711 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~--~~~~ki~dfgl~~~~~ 711 (833)
||||++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+++...
T Consensus 80 ~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~ 155 (321)
T 1tki_A 80 FEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK 155 (321)
T ss_dssp ECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred EEeCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECC
Confidence 9999999999999753 346899999999999999999999 789999999999999987 7899999999998875
Q ss_pred CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... +........ ...
T Consensus 156 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~~~i~~~----------~~~ 221 (321)
T 1tki_A 156 PGD---NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ-QIIENIMNA----------EYT 221 (321)
T ss_dssp TTC---EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHT----------CCC
T ss_pred CCC---ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHH-HHHHHHHcC----------CCC
Confidence 433 234568999999999999888999999999999999999999999764432 222111111 111
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.........+.++.+++.+||+.||++|||+.|+++|
T Consensus 222 ~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h 258 (321)
T 1tki_A 222 FDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQH 258 (321)
T ss_dssp CCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred CChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1111122345678899999999999999999999985
No 54
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=4e-44 Score=386.20 Aligned_cols=257 Identities=19% Similarity=0.230 Sum_probs=209.3
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhh--ccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQ--LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
..+.|+..+.||+|+||.||+|... +|+.||||++........ ....+.+.+|++++++++|||||+++++|..++.
T Consensus 9 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 88 (326)
T 2y0a_A 9 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD 88 (326)
T ss_dssp HHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred cccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence 4467889999999999999999974 799999999953322111 1235789999999999999999999999999999
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC----Cceeccce
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK----EPQIGDIE 705 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~----~~ki~dfg 705 (833)
.++||||+++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||
T Consensus 89 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 163 (326)
T 2y0a_A 89 VILILELVAGGELFDFLAE--KESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFG 163 (326)
T ss_dssp EEEEEECCCSCBHHHHHTT--SSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEEEcCCCCCHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence 9999999999999999975 456999999999999999999999 78999999999999999887 79999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI 785 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 785 (833)
+++...... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......... .......
T Consensus 164 ~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~-~~~~~~~---- 235 (326)
T 2y0a_A 164 LAHKIDFGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLAN-VSAVNYE---- 235 (326)
T ss_dssp TCEECCTTS---CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHH-HHHTCCC----
T ss_pred CCeECCCCC---ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHH-HHhcCCC----
Confidence 998875433 22456899999999999988999999999999999999999999975443222111 1111000
Q ss_pred ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.........+..+.+++.+||+.||++|||+.|+++|
T Consensus 236 ------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 272 (326)
T 2y0a_A 236 ------FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272 (326)
T ss_dssp ------CCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred ------cCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 0111112234567899999999999999999999975
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=405.75 Aligned_cols=405 Identities=23% Similarity=0.259 Sum_probs=316.9
Q ss_pred CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
++|+.|++++|.+++++ .|..+++|++|+|++|+|+++.|..|.++++|++|+|++|+|+.+++ . .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-H--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-C--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-c--ccCCccEEec
Confidence 68999999999999974 59999999999999999999999999999999999999999996544 4 8999999999
Q ss_pred cCCcCcc-cCCccccCCCCCCEEeccCCcCCccCCccccCCCCC--cEEECcCCcC--CCCCCccccc------------
Q 003296 86 SGNAFHG-EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKL--EVLILSANNL--DGRLPTSLAS------------ 148 (833)
Q Consensus 86 ~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~L~Ls~N~l--~~~~p~~~~~------------ 148 (833)
++|.+++ ..|..|+++++|++|+|++|.|++ ..|..+++| ++|+|++|.+ ++..|..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999997 478999999999999999999986 567888888 9999999999 7777776665
Q ss_pred --------------CCccCcccccccc-------ccccCChhh--hhcCCEEecccccccccCCccCC---CCCCCCEEe
Q 003296 149 --------------ITTLSRFAANQNK-------FSGSVPGGI--TRFLRNLDLSYNKLLGVIPIDLL---SHPNLQTID 202 (833)
Q Consensus 149 --------------l~~L~~l~l~~n~-------l~~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~---~~~~L~~L~ 202 (833)
+++|+.++++.|. +.+.+| .+ ...|+.|++++|.+.+..+..+. ..++|++|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 6677888888876 555444 22 34588888888777653222111 135788888
Q ss_pred cccccCcccCCCCC-----C--cCCcEEEcCCccccCCCCccccCCC---CCCCEEECCCCCCCCCCCccccCCCCCcEE
Q 003296 203 LSVNMLEGSLPQNM-----S--PNLVRLRLGTNLLIGEIPSATFTSL---EKLTYLELDNNSFTGMIPQQLGSCRSLTLL 272 (833)
Q Consensus 203 Ls~N~l~~~~p~~~-----~--~~L~~L~l~~n~l~~~~~~~~f~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 272 (833)
+++|.++|.+|..+ . ++|+.++++.|.+ .+|...+..+ .+|+.|++++|.+.... .+..+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 88888887777765 2 5677778888776 4554333333 56888888888876542 12677888888
Q ss_pred EccCCccCCCChhhhCCCCCCcEEEccCCcCCC--cCchhhcCCCcCceeeccCCcCcccCcc-ccccCCCCCEEEccCC
Q 003296 273 NLAQNELNGSLPIQLGSLGILQVMNLQLNKLSG--EIPSQFSQLKLLSTMNISWNSLSGSIPS-FLSNLTNLVNLNLRQN 349 (833)
Q Consensus 273 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N 349 (833)
++++|++++..|..++.+++|+.|++++|++++ .+|..|..+++|++|++++|.+++.+|. .+..+++|+.|+|++|
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 888888888788888888888888888888886 4567788888888888888888874554 4777888888888888
Q ss_pred ccccccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEecccCcCccccc
Q 003296 350 NLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIP 426 (833)
Q Consensus 350 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 426 (833)
++++..|..+. ++|+.|++++|+++ .+|.....+. +.|++++|.+++..+..|..+++|+.|++++|.+++..+
T Consensus 410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 88777766554 68888888888887 4554333332 578888888885444458899999999999999987654
No 56
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-43 Score=379.68 Aligned_cols=248 Identities=19% Similarity=0.237 Sum_probs=207.4
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|+.++++++|||||++++++.+.+..|+|
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLK-KEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE-HHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 46788899999999999999974 79999999994 32223334567889999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus 85 ~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~ 159 (318)
T 1fot_A 85 MDYIEGGELFSLLRK--SQRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV 159 (318)
T ss_dssp ECCCCSCBHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC
T ss_pred EeCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCc
Confidence 999999999999986 346899999999999999999999 789999999999999999999999999999876432
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
..+.+||+.|+|||++.+..++.++||||+||++|||++|+.||.+......+. ....... ..+.
T Consensus 160 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~-~i~~~~~--------~~p~- 224 (318)
T 1fot_A 160 -----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYE-KILNAEL--------RFPP- 224 (318)
T ss_dssp -----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH-HHHHCCC--------CCCT-
T ss_pred -----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHH-HHHhCCC--------CCCC-
Confidence 245689999999999999999999999999999999999999997654432221 1111100 0111
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~ 828 (833)
....++.+++.+|++.||++|| +++|+++|
T Consensus 225 -----~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h 259 (318)
T 1fot_A 225 -----FFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH 259 (318)
T ss_dssp -----TSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred -----CCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence 1234678999999999999999 89998864
No 57
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1.4e-43 Score=381.13 Aligned_cols=248 Identities=15% Similarity=0.217 Sum_probs=205.1
Q ss_pred cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296 557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE 635 (833)
Q Consensus 557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e 635 (833)
|+..+.||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++++++|||||+++++|...+..++|||
T Consensus 47 ~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 122 (321)
T 2c30_A 47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLR----KQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLME 122 (321)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT----TCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred hhccEEeccCCCeEEEEEEECCCCcEEEEEEEecc----chhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEe
Confidence 666789999999999999975 7999999998422 22345779999999999999999999999999999999999
Q ss_pred eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296 636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS 715 (833)
Q Consensus 636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~ 715 (833)
|+++|+|.+++.. ..++|..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 123 ~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~ 196 (321)
T 2c30_A 123 FLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP 196 (321)
T ss_dssp CCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC
T ss_pred cCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCcc
Confidence 9999999999874 35999999999999999999999 78999999999999999999999999999987654322
Q ss_pred CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296 716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL 795 (833)
Q Consensus 716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (833)
......||+.|+|||++.+..++.++|||||||++|||++|+.||......... ...... . .+...
T Consensus 197 --~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~-~~~~~~-~------~~~~~---- 262 (321)
T 2c30_A 197 --KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAM-KRLRDS-P------PPKLK---- 262 (321)
T ss_dssp --CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH-HHHHHS-S------CCCCT----
T ss_pred --ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH-HHHhcC-C------CCCcC----
Confidence 224568999999999999889999999999999999999999999755433221 111111 0 00010
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.....+.++.+++.+||+.||++|||++|++++
T Consensus 263 ~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 263 NSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 011223467899999999999999999999875
No 58
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.9e-44 Score=380.54 Aligned_cols=261 Identities=19% Similarity=0.248 Sum_probs=205.2
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|+..+.||+|+||.||+|+. .+|+.||||++.... .......+.|.+|++++++++|||||++++++..++..|+|
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPP-REKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCS-SCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCc-cccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 4577889999999999999996 478999999984221 11222346899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 90 ~e~~~g~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 164 (294)
T 4eqm_A 90 MEYIEGPTLSEYIES--HGPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET 164 (294)
T ss_dssp EECCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred EeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence 999999999999986 346999999999999999999999 788999999999999999999999999999865433
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
... ......||+.|+|||++.+..++.++||||+||++|||+||+.||.+.............. .... .....
T Consensus 165 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~---~~~~-~~~~~-- 237 (294)
T 4eqm_A 165 SLT-QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDS---VPNV-TTDVR-- 237 (294)
T ss_dssp -----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSC---CCCH-HHHSC--
T ss_pred ccc-ccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhcc---CCCc-chhcc--
Confidence 211 2234679999999999999899999999999999999999999998654433222211111 0000 00000
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHHHhc
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARP-KMKSVLRMLLNA 832 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rp-s~~evl~~L~~~ 832 (833)
...+..+.+++.+|++.||++|| +++++.+.|+++
T Consensus 238 ----~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~ 273 (294)
T 4eqm_A 238 ----KDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSV 273 (294)
T ss_dssp ----TTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTS
T ss_pred ----cCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHH
Confidence 12345678999999999999998 999999998865
No 59
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=1.3e-44 Score=398.08 Aligned_cols=258 Identities=17% Similarity=0.206 Sum_probs=207.3
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|...+.||+|+||.||+|... +|+.||||+++... .....++|.+|+++|++++|||||+++++|..++..|+|
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 190 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL---PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIV 190 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS---CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC---CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEE
Confidence 46777899999999999999985 79999999985221 112245789999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||++|+|.++++.. ...+++.++..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus 191 ~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~ 266 (377)
T 3cbl_A 191 MELVQGGDFLTFLRTE-GARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADG 266 (377)
T ss_dssp EECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTS
T ss_pred EEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCC
Confidence 9999999999999753 235899999999999999999999 788999999999999999999999999999875432
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
..........+++.|+|||++.+..++.++|||||||++|||+| |+.||.+..... . .......... ..+
T Consensus 267 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~-~-~~~~~~~~~~------~~~- 337 (377)
T 3cbl_A 267 VYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ-T-REFVEKGGRL------PCP- 337 (377)
T ss_dssp EEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH-H-HHHHHTTCCC------CCC-
T ss_pred ceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-H-HHHHHcCCCC------CCC-
Confidence 21111122346788999999998899999999999999999998 999997543321 1 1111111110 001
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
...+.++.+++.+||+.||++|||++||++.|++++
T Consensus 338 -----~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 338 -----ELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 112346789999999999999999999999998863
No 60
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-42 Score=392.50 Aligned_cols=370 Identities=22% Similarity=0.224 Sum_probs=324.2
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCC-CCCcccCCCCCCCEEEccCC
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG-FLPINLGKTKALEELVLSGN 88 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N 88 (833)
-+.++++++.++.+|. -.++|++|||++|+|+++.+..|.++++|++|+|++|.+.+ +.+..|.++++|++|+|++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4579999999999987 44889999999999999999999999999999999999974 45778999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCCccCCcc--ccCCCCCcEEECcCCcCCCCCCcc-cccCCccCcccccccccccc
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDR--IGELSKLEVLILSANNLDGRLPTS-LASITTLSRFAANQNKFSGS 165 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~l~~n~l~~~ 165 (833)
.+++..|..|+++++|++|+|++|++++..+.. |+.+++|++|+|++|.+++..|.. +..+++|+.|++++|.+++.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 999999999999999999999999998755544 999999999999999999988877 89999999999999999988
Q ss_pred CChhhh----hcCCEEecccccccccCCcc--------CCCCCCCCEEecccccCcccCCCCCC-----cCCcEEEcCCc
Q 003296 166 VPGGIT----RFLRNLDLSYNKLLGVIPID--------LLSHPNLQTIDLSVNMLEGSLPQNMS-----PNLVRLRLGTN 228 (833)
Q Consensus 166 ~p~~~~----~~L~~L~Ls~N~l~~~~~~~--------~~~~~~L~~L~Ls~N~l~~~~p~~~~-----~~L~~L~l~~n 228 (833)
.|..+. ..|+.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+. ++++.|++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 776653 46899999999998766544 33668999999999999887765442 68999999988
Q ss_pred cccCCC---------CccccCC--CCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEE
Q 003296 229 LLIGEI---------PSATFTS--LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMN 297 (833)
Q Consensus 229 ~l~~~~---------~~~~f~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 297 (833)
...+.. ....|.. .++|++|++++|.+++..|..|+.+++|+.|+|++|++.+..|..|..+++|+.|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 654321 1112222 36899999999999999999999999999999999999988888999999999999
Q ss_pred ccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCc
Q 003296 298 LQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSG 377 (833)
Q Consensus 298 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 377 (833)
|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 99999999889999999999999999999999889999999999999999999998777888999999999999999998
Q ss_pred cCCC
Q 003296 378 TIPM 381 (833)
Q Consensus 378 ~~p~ 381 (833)
..|.
T Consensus 410 ~~~~ 413 (455)
T 3v47_A 410 SCPR 413 (455)
T ss_dssp CTTT
T ss_pred CCCc
Confidence 8774
No 61
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.5e-44 Score=390.74 Aligned_cols=252 Identities=21% Similarity=0.220 Sum_probs=203.0
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~ 631 (833)
.++|+..+.||+|+||.||+|+. .+|+.||||+++ +.........+.+.+|+++++++ +|||||++++++.+++..|
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~-~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLK-KDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-HHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEE-HHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 45788899999999999999997 479999999994 32233344567889999999998 6999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
+|||||++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+|+...
T Consensus 101 lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~ 175 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQK--SRRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI 175 (353)
T ss_dssp EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence 99999999999999986 356999999999999999999999 7899999999999999999999999999998643
Q ss_pred CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+...... .......... .+
T Consensus 176 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~-~~~i~~~~~~--------~p 244 (353)
T 3txo_A 176 CNG--VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDL-FEAILNDEVV--------YP 244 (353)
T ss_dssp C-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCCC--------CC
T ss_pred cCC--ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHH-HHHHHcCCCC--------CC
Confidence 222 123567899999999999888899999999999999999999999976543322 2111111000 01
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHH
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKM------KSVLRM 828 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~------~evl~~ 828 (833)
. ....++.+++.+||+.||++||++ +|+++|
T Consensus 245 ~------~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~h 281 (353)
T 3txo_A 245 T------WLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRH 281 (353)
T ss_dssp T------TSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred C------CCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence 0 123467899999999999999998 777764
No 62
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.3e-44 Score=384.48 Aligned_cols=257 Identities=16% Similarity=0.228 Sum_probs=205.1
Q ss_pred HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
..|+..+.||+|+||.||+|.+. .+..||||+++... .....+.|.+|++++++++|||||+++++|.+.+..
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 125 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY---TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLA 125 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCC
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCcc
Confidence 45777899999999999999974 34569999995321 122356899999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
|+||||+++|+|.++++.. ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 126 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 201 (325)
T 3kul_A 126 MIVTEYMENGSLDTFLRTH-DGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVL 201 (325)
T ss_dssp EEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred EEEeeCCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCccccc
Confidence 9999999999999999753 346999999999999999999999 788999999999999999999999999999877
Q ss_pred CCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 711 DPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 711 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
....... ......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+...... ..... .....
T Consensus 202 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~-~~~~~-~~~~~------ 273 (325)
T 3kul_A 202 EDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDV-ISSVE-EGYRL------ 273 (325)
T ss_dssp C----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHH-HHHHH-TTCCC------
T ss_pred ccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHH-HHHHH-cCCCC------
Confidence 5432211 1233457889999999998899999999999999999999 9999975443221 11111 10000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
... ...+.++.+++.+||+.||++|||+.||++.|+.+
T Consensus 274 ~~~------~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l 311 (325)
T 3kul_A 274 PAP------MGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL 311 (325)
T ss_dssp CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCC------CCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 000 12345688999999999999999999999999875
No 63
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=2.1e-44 Score=395.71 Aligned_cols=253 Identities=15% Similarity=0.217 Sum_probs=202.7
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l 632 (833)
++|+..++||+|+||.||+|+.. +|+.||||+++. .........+.+.+|..++.++ +|||||+++++|.+++..|+
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k-~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKK-ELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEG-GGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEh-hhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 56888999999999999999974 789999999953 2222333456789999999887 89999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
|||||++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+|+....
T Consensus 131 V~E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 205 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 205 (396)
T ss_dssp EEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEcCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence 9999999999999986 346999999999999999999999 78999999999999999999999999999986432
Q ss_pred CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH-------HHHHHHhhccccccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL-------AKWVLRNSAQQDKLDHI 785 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~-------~~~~~~~~~~~~~~~~~ 785 (833)
.. ....+.+||+.|||||++.+..|+.++||||+||++|||++|+.||...... ..+......
T Consensus 206 ~~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~-------- 275 (396)
T 4dc2_A 206 PG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL-------- 275 (396)
T ss_dssp TT--CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHH--------
T ss_pred CC--CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHh--------
Confidence 22 1335678999999999999999999999999999999999999999632211 111111111
Q ss_pred ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHH
Q 003296 786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKM------KSVLRM 828 (833)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~------~evl~~ 828 (833)
......+ ...+.++.+++.+||+.||++||++ +||++|
T Consensus 276 -~~~~~~p----~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~H 319 (396)
T 4dc2_A 276 -EKQIRIP----RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 319 (396)
T ss_dssp -HCCCCCC----TTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHS
T ss_pred -ccccCCC----CcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcC
Confidence 1111100 1234567899999999999999995 677654
No 64
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=4.3e-44 Score=391.95 Aligned_cols=250 Identities=16% Similarity=0.202 Sum_probs=205.3
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|... +|+.||||++. +.........+.+.+|++++++++|||||+++++|.+.+..|+|
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~-~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMN-KQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEe-hhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 46788899999999999999974 78999999994 33333445567899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus 94 ~e~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 168 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQ--NVHFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE 168 (384)
T ss_dssp ECCCTTEEHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence 999999999999986 456999999999999999999999 789999999999999999999999999999876543
Q ss_pred CCCCccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCc--cHHHHHHHhhcccccccccccc
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGN--ELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
. .....+||+.|+|||++.+ ..|+.++|||||||++|||++|+.||.... ...............
T Consensus 169 ~---~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~------- 238 (384)
T 4fr4_A 169 T---QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVT------- 238 (384)
T ss_dssp C---CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCC-------
T ss_pred C---ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccC-------
Confidence 3 2356789999999999864 458999999999999999999999997432 222222111111000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCC-HHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK-MKSVLR 827 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-~~evl~ 827 (833)
.+ ...+.++.+++.+||+.||++||+ +++|.+
T Consensus 239 -~p------~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 239 -YP------SAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp -CC------TTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred -CC------CcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 00 112356889999999999999998 777765
No 65
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=3.5e-44 Score=400.89 Aligned_cols=257 Identities=16% Similarity=0.214 Sum_probs=208.1
Q ss_pred HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
...+.|+..+.||+|+||.||+|.. .+|+.||+|++..... .....+.+.+|++++++++|||||++++++.+++..
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 85 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL--SARDHQKLEREARICRLLKHPNIVRLHDSISEEGHH 85 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC--HHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEE
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEE
Confidence 4567899999999999999999986 5899999999953321 122356799999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC---CCCCceeccceee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK---SLKEPQIGDIELC 707 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~---~~~~~ki~dfgl~ 707 (833)
|+|||||++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++ .++.+||+|||++
T Consensus 86 ~lv~E~~~gg~L~~~i~~--~~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a 160 (444)
T 3soa_A 86 YLIFDLVTGGELFEDIVA--REYYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLA 160 (444)
T ss_dssp EEEECCCBCCBHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSC
T ss_pred EEEEEeCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCcee
Confidence 999999999999999986 356999999999999999999999 78999999999999998 4678999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (833)
+....... .....+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+......+....... ...
T Consensus 161 ~~~~~~~~--~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~-~~~----- 232 (444)
T 3soa_A 161 IEVEGEQQ--AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGA-YDF----- 232 (444)
T ss_dssp BCCCTTCC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTC-CCC-----
T ss_pred EEecCCCc--eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCC-CCC-----
Confidence 87654322 2345789999999999998899999999999999999999999997654332221111111 000
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....+...+.++.+++.+||+.||++|||+.|+++|
T Consensus 233 -----~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 233 -----PSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp -----CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred -----CccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 011111234578899999999999999999999875
No 66
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-44 Score=387.84 Aligned_cols=249 Identities=16% Similarity=0.196 Sum_probs=203.9
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
..|...+.||+|+||.||+|.. .+|+.||||++. ..........+.+.+|++++++++|||||++++++..++..++|
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFIS-RQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEe-hHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3577789999999999999996 689999999994 22223334457899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+ +|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||+++++.+||+|||+++.....
T Consensus 88 ~E~~-~g~l~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~ 161 (336)
T 3h4j_B 88 IEYA-GGELFDYIVE--KKRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161 (336)
T ss_dssp ECCC-CEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred EECC-CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence 9999 7899999876 346999999999999999999999 778999999999999999999999999999866433
Q ss_pred CCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
. .....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+.... .....+.......
T Consensus 162 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~-----------~~~~~i~~~~~~~ 227 (336)
T 3h4j_B 162 N---FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP-----------NLFKKVNSCVYVM 227 (336)
T ss_dssp B---TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST-----------TCBCCCCSSCCCC
T ss_pred c---ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH-----------HHHHHHHcCCCCC
Confidence 2 2245689999999999988776 68999999999999999999999753221 1111111111110
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
+ ...+.++.+++.+||+.||++|||++|++++
T Consensus 228 p----~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 228 P----DFLSPGAQSLIRRMIVADPMQRITIQEIRRD 259 (336)
T ss_dssp C----TTSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred c----ccCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence 1 1234567899999999999999999999864
No 67
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=5.7e-44 Score=389.03 Aligned_cols=259 Identities=15% Similarity=0.158 Sum_probs=207.4
Q ss_pred HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh-hccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF-QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
..+.|+..+.||+|+||.||+|.. .+|+.||||++....... .....+.+.+|++++++++|||||+++++|..++..
T Consensus 22 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 101 (351)
T 3c0i_A 22 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGML 101 (351)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred cccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 456799999999999999999997 479999999984221111 112457899999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---ceeccce
Q 003296 631 YLFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---PQIGDIE 705 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---~ki~dfg 705 (833)
|+|||||++|+|.+++... ....+++..+..++.|+++||+||| +.+|+||||||+|||++.++. +|++|||
T Consensus 102 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg 178 (351)
T 3c0i_A 102 YMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFG 178 (351)
T ss_dssp EEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCT
T ss_pred EEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCc
Confidence 9999999999999888642 1335899999999999999999999 789999999999999986654 9999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI 785 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 785 (833)
+++....... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+... .........
T Consensus 179 ~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~i~~~------- 247 (351)
T 3c0i_A 179 VAIQLGESGL--VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE--RLFEGIIKG------- 247 (351)
T ss_dssp TCEECCTTSC--BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH--HHHHHHHHT-------
T ss_pred ceeEecCCCe--eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH--HHHHHHHcC-------
Confidence 9987754322 22456899999999999988999999999999999999999999975432 111111111
Q ss_pred ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
........+...+.++.+++.+||+.||++|||+.|+++|
T Consensus 248 ---~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 287 (351)
T 3c0i_A 248 ---KYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNH 287 (351)
T ss_dssp ---CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ---CCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0001111112234578899999999999999999999874
No 68
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=3.2e-44 Score=392.13 Aligned_cols=256 Identities=19% Similarity=0.265 Sum_probs=208.1
Q ss_pred HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
...+.|+..+.||+|+||.||+|... +|+.||||++..... .....+.+.+|++++++++|||||+++++|.+++..
T Consensus 26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~ 103 (362)
T 2bdw_A 26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL--SARDFQKLEREARICRKLQHPNIVRLHDSIQEESFH 103 (362)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEE
Confidence 45678999999999999999999974 799999999953221 112346789999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---Cceeccceee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EPQIGDIELC 707 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~ki~dfgl~ 707 (833)
|+|||||++|+|.+++.. ...+++..+..++.|+++||+||| +.+|+||||||+|||++.++ .+||+|||++
T Consensus 104 ~lv~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a 178 (362)
T 2bdw_A 104 YLVFDLVTGGELFEDIVA--REFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLA 178 (362)
T ss_dssp EEEECCCCSCBHHHHHTT--CSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred EEEEecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcc
Confidence 999999999999999975 346899999999999999999999 78999999999999998654 5999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (833)
+...... .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+......+. ........
T Consensus 179 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~-~i~~~~~~------ 248 (362)
T 2bdw_A 179 IEVNDSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYA-QIKAGAYD------ 248 (362)
T ss_dssp BCCTTCC---SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH-HHHHTCCC------
T ss_pred eEecCCc---ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHhCCCC------
Confidence 8765332 2245789999999999998899999999999999999999999997654322221 11111000
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.....+...+.++.+++.+||+.||++|||+.|+++|
T Consensus 249 ----~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 249 ----YPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp ----CCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred ----CCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 0011112334578899999999999999999999875
No 69
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.7e-43 Score=370.68 Aligned_cols=255 Identities=18% Similarity=0.248 Sum_probs=210.1
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
+.|+..+.||+|+||.||+|...++..||||++.... ...+++.+|++++++++|||||++++++..++..++||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 82 (268)
T 3sxs_A 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-----MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVT 82 (268)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-----BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-----CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEE
Confidence 4677889999999999999999888899999994221 23467999999999999999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
||+++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 83 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 158 (268)
T 3sxs_A 83 EYISNGCLLNYLRSH-GKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ 158 (268)
T ss_dssp ECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC
T ss_pred EccCCCcHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhh
Confidence 999999999999753 235899999999999999999999 7899999999999999999999999999998765433
Q ss_pred CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. ......||+.|+|||++.+..++.++||||+||++|||+| |+.||........... .... .. ...+
T Consensus 159 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~-~~~~-~~---~~~~----- 227 (268)
T 3sxs_A 159 YV-SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLK-VSQG-HR---LYRP----- 227 (268)
T ss_dssp EE-ECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHH-HHTT-CC---CCCC-----
T ss_pred hh-cccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHH-HHcC-CC---CCCC-----
Confidence 21 2234567788999999998899999999999999999999 9999975443322211 1111 00 0000
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
...+.++.+++.+||+.||++|||+.|++++|++++
T Consensus 228 ----~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~ 263 (268)
T 3sxs_A 228 ----HLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLR 263 (268)
T ss_dssp ----TTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGC
T ss_pred ----CcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 012346789999999999999999999999999875
No 70
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=3.5e-44 Score=385.96 Aligned_cols=254 Identities=18% Similarity=0.241 Sum_probs=204.1
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|... +|+.||||++..... ....+.+.+|++++++++|||||++++++.+++..|+|
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 83 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc---cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 46788899999999999999975 899999999843221 12346789999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 84 ~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 158 (323)
T 3tki_A 84 LEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (323)
T ss_dssp EECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred EEcCCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccC
Confidence 999999999999975 446999999999999999999999 789999999999999999999999999999876433
Q ss_pred CCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
.........+||+.|+|||++.+..+ +.++|||||||++|||++|+.||.....................
T Consensus 159 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~--------- 229 (323)
T 3tki_A 159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN--------- 229 (323)
T ss_dssp TEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTST---------
T ss_pred CcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCC---------
Confidence 32223345789999999999987765 78999999999999999999999754432221111111100000
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.......++.+++.+||+.||++|||++|++++
T Consensus 230 ---~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 230 ---PWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp ---TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ---ccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 011234567799999999999999999999875
No 71
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1.4e-44 Score=399.43 Aligned_cols=256 Identities=16% Similarity=0.195 Sum_probs=207.7
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
.++|+..+.||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|++++++++|||||+++++|.+++..|+
T Consensus 68 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~-k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~l 146 (410)
T 3v8s_A 68 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLS-KFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYM 146 (410)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred ccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEe-hhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEE
Confidence 467888999999999999999975 78999999994 3233334455679999999999999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
|||||++|+|.++++. ..+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+|+....
T Consensus 147 V~E~~~gg~L~~~l~~---~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~ 220 (410)
T 3v8s_A 147 VMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNK 220 (410)
T ss_dssp EECCCTTEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeEeecc
Confidence 9999999999999975 35899999999999999999999 78999999999999999999999999999987653
Q ss_pred CCCCCccccccccccccccccccCCc----ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYTMR----VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
... ....+.+||+.|||||++.+.. |+.++|||||||++|||++|+.||.+........ .........
T Consensus 221 ~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~-~i~~~~~~~------ 292 (410)
T 3v8s_A 221 EGM-VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYS-KIMNHKNSL------ 292 (410)
T ss_dssp TSE-EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH-HHHTHHHHC------
T ss_pred CCc-ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHH-HHHhccccc------
Confidence 321 1234678999999999987654 8899999999999999999999998654332221 111110000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEA--RPKMKSVLRM 828 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~--Rps~~evl~~ 828 (833)
..+. ....+.++.+++.+||+.+|++ ||+++||++|
T Consensus 293 ~~p~----~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 293 TFPD----DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp CCCT----TCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred cCCC----cccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 0000 0112356789999999999998 9999999876
No 72
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=8.3e-44 Score=390.49 Aligned_cols=257 Identities=18% Similarity=0.262 Sum_probs=196.1
Q ss_pred HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
.+|+..+.||+|+||.||+|+.. ++..||||+++... .....++|.+|++++++++|||||+++++|...+..
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 121 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY---TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV 121 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCce
Confidence 57888999999999999999864 57889999995321 122356899999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
++|||||++|+|.++++.. ...++|.++..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++..
T Consensus 122 ~lv~e~~~~~sL~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 197 (373)
T 2qol_A 122 MIVTEYMENGSLDSFLRKH-DAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVL 197 (373)
T ss_dssp EEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred EEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCcccccc
Confidence 9999999999999999853 346999999999999999999999 778999999999999999999999999999876
Q ss_pred CCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 711 DPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 711 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
....... ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... +..... ......
T Consensus 198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~-~~~~~i-~~~~~~------ 269 (373)
T 2qol_A 198 EDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ-DVIKAV-DEGYRL------ 269 (373)
T ss_dssp ----------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH-HHHHHH-HTTEEC------
T ss_pred ccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHH-HcCCCC------
Confidence 5332111 1123356789999999998899999999999999999998 99999754332 111111 110000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. ....+.++.+++.+||+.||++||++.||+++|+++
T Consensus 270 --~~----~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~ 307 (373)
T 2qol_A 270 --PP----PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 307 (373)
T ss_dssp --CC----CTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --CC----CccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHH
Confidence 00 012345688999999999999999999999999865
No 73
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=1e-43 Score=380.45 Aligned_cols=265 Identities=16% Similarity=0.227 Sum_probs=203.0
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
+.|+..+.||+|+||+||+|+..+|+.||||++.... ......+.+.+|++++++++|||||++++++.+++..++||
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDA--EDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC--------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEeccc--ccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 5678889999999999999999889999999994221 12233467899999999999999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
|||++ +|.+++... ...+++.++..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++......
T Consensus 99 e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 173 (311)
T 3niz_A 99 EFMEK-DLKKVLDEN-KTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPV 173 (311)
T ss_dssp ECCSE-EHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC
T ss_pred cCCCC-CHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCc
Confidence 99984 888888753 345899999999999999999999 7899999999999999999999999999998764332
Q ss_pred CCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHH--HHHhhcccc--ccccccc--
Q 003296 715 STGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKW--VLRNSAQQD--KLDHILD-- 787 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~--~~~~~~~~~--~~~~~~~-- 787 (833)
. ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....... +........ ......+
T Consensus 174 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3niz_A 174 R--SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELP 251 (311)
T ss_dssp C-----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSH
T ss_pred c--cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccc
Confidence 2 2245679999999999876 56899999999999999999999999754432221 111111100 0000000
Q ss_pred ----cc---ccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 788 ----FN---VSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 788 ----~~---~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.. .... .........++.+++.+||+.||++|||++|+++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 301 (311)
T 3niz_A 252 LWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH 301 (311)
T ss_dssp HHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred hhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 00 0000 00011223578899999999999999999999975
No 74
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=6e-44 Score=386.25 Aligned_cols=251 Identities=21% Similarity=0.241 Sum_probs=206.3
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~ 631 (833)
.++|...+.||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|.++++++ +|||||++++++.+++..|
T Consensus 16 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~ 94 (345)
T 1xjd_A 16 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALK-KDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF 94 (345)
T ss_dssp CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEE-hHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEE
Confidence 457888899999999999999974 79999999994 32222334567789999999987 8999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
+||||+++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++...
T Consensus 95 lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 169 (345)
T 1xjd_A 95 FVMEYLNGGDLMYHIQS--CHKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM 169 (345)
T ss_dssp EEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhcc
Confidence 99999999999999986 346899999999999999999999 7899999999999999999999999999998643
Q ss_pred CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
.... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+...... ......... ..+
T Consensus 170 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~-~~~i~~~~~--------~~p 238 (345)
T 1xjd_A 170 LGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEEL-FHSIRMDNP--------FYP 238 (345)
T ss_dssp CTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCC--------CCC
T ss_pred cCCC--cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHH-HHHHHhCCC--------CCC
Confidence 2221 23567899999999999998999999999999999999999999976543222 111111100 111
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCHH-HHHH
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMK-SVLR 827 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~-evl~ 827 (833)
. ..+.++.+++.+||+.||++||++. ||++
T Consensus 239 ~------~~s~~~~~li~~lL~~dp~~R~~~~~~i~~ 269 (345)
T 1xjd_A 239 R------WLEKEAKDLLVKLFVREPEKRLGVRGDIRQ 269 (345)
T ss_dssp T------TSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred c------ccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence 1 1234678999999999999999997 6654
No 75
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=2.4e-43 Score=382.92 Aligned_cols=248 Identities=15% Similarity=0.177 Sum_probs=207.1
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|+.. +|+.||||++. +.........+.+.+|++++++++|||||++++++.+++..|+|
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILD-KQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEE-hHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 46778899999999999999974 79999999994 33333344567899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus 120 ~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~ 194 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 194 (350)
T ss_dssp EECCTTCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred EcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCC
Confidence 999999999999986 346899999999999999999999 789999999999999999999999999999876432
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..... .......... ..+
T Consensus 195 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~i~~~~~--------~~p-- 258 (350)
T 1rdq_E 195 -----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ-IYEKIVSGKV--------RFP-- 258 (350)
T ss_dssp -----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCC--------CCC--
T ss_pred -----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHH-HHHHHHcCCC--------CCC--
Confidence 235689999999999999899999999999999999999999997654322 2211111100 011
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~ 828 (833)
...+.++.+++.+||+.||++||+ ++||++|
T Consensus 259 ----~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h 294 (350)
T 1rdq_E 259 ----SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH 294 (350)
T ss_dssp ----TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred ----CCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence 012346789999999999999998 8888764
No 76
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=2.5e-44 Score=394.07 Aligned_cols=261 Identities=19% Similarity=0.237 Sum_probs=208.0
Q ss_pred HHHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL 625 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~ 625 (833)
..+.|+..+.||+|+||.||+|.+ .+++.||||+++.... ....+.|.+|+++++++ +|||||+++++|.
T Consensus 20 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~ 96 (359)
T 3vhe_A 20 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACT 96 (359)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCC---HHHHHHHHHHHHHHHhhcCCcceeeeeeeee
Confidence 346788899999999999999973 3678999999953211 12246799999999999 7999999999998
Q ss_pred cCCc-eEEEEeeCCCCChhhhhhcCCC-----------------------------------------------------
Q 003296 626 ASDS-AYLFYEYAPKGTLFDVLHGCLE----------------------------------------------------- 651 (833)
Q Consensus 626 ~~~~-~~lv~ey~~~g~L~~~l~~~~~----------------------------------------------------- 651 (833)
.++. .++|||||++|+|.++++....
T Consensus 97 ~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (359)
T 3vhe_A 97 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDV 176 (359)
T ss_dssp STTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------------
T ss_pred cCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchh
Confidence 7654 9999999999999999986432
Q ss_pred -----------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccc
Q 003296 652 -----------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720 (833)
Q Consensus 652 -----------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~ 720 (833)
..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++............
T Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~ 253 (359)
T 3vhe_A 177 EEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKG 253 (359)
T ss_dssp -------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC-
T ss_pred hhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhcc
Confidence 12899999999999999999999 7889999999999999999999999999998764433322334
Q ss_pred cccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS 799 (833)
Q Consensus 721 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (833)
...||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.............. ... ... ..
T Consensus 254 ~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~-~~~------~~~------~~ 320 (359)
T 3vhe_A 254 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEG-TRM------RAP------DY 320 (359)
T ss_dssp -CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHT-CCC------CCC------TT
T ss_pred ccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcC-CCC------CCC------CC
Confidence 5678999999999998899999999999999999999 999997644322222111111 100 000 01
Q ss_pred HHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 800 QMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 800 ~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.+.++.+++.+||+.||++|||+.||+++|+++
T Consensus 321 ~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 353 (359)
T 3vhe_A 321 TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 353 (359)
T ss_dssp CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence 234678999999999999999999999999875
No 77
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.1e-43 Score=372.37 Aligned_cols=254 Identities=20% Similarity=0.263 Sum_probs=208.4
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
++|+..+.||+|+||.||+|...+++.||||++... ....++|.+|++++++++|||||++++++.+++..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-----AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF 84 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTT-----SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEeccc-----ccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEE
Confidence 457778999999999999999988999999999422 123467999999999999999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
||+++|+|.++++.. ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 85 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 160 (269)
T 4hcu_A 85 EFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ 160 (269)
T ss_dssp ECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH
T ss_pred EeCCCCcHHHHHHhc-CcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccc
Confidence 999999999999753 346899999999999999999999 7889999999999999999999999999998654322
Q ss_pred CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
. .......||+.|+|||++.+..++.++||||+||++|||++ |+.||...... ......... .. . ...
T Consensus 161 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~-~~~~~~~~~-~~---~---~~~-- 229 (269)
T 4hcu_A 161 Y-TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS-EVVEDISTG-FR---L---YKP-- 229 (269)
T ss_dssp H-HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHHHHTT-CC---C---CCC--
T ss_pred c-ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH-HHHHHHhcC-cc---C---CCC--
Confidence 1 11234567889999999988889999999999999999999 99999754432 221111111 00 0 000
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+.++.+++.+||+.||++|||++|++++|+++
T Consensus 230 ----~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l 264 (269)
T 4hcu_A 230 ----RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 264 (269)
T ss_dssp ----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ----CcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHH
Confidence 01234678999999999999999999999999876
No 78
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.3e-43 Score=394.53 Aligned_cols=260 Identities=15% Similarity=0.169 Sum_probs=209.2
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
..++|+..++||+|+||+||+|+.. +|+.||||+++ +.........+.+.+|++++++++|||||+++++|.+++..|
T Consensus 72 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~-~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~ 150 (437)
T 4aw2_A 72 HREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILN-KWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLY 150 (437)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEE-HHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEE
T ss_pred ChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEE-HHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEE
Confidence 3567889999999999999999975 68999999994 322233344566999999999999999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
+|||||++|+|.+++... ...+++..+..++.|++.||+||| +.+||||||||+|||++.++.+||+|||+|+...
T Consensus 151 lV~Ey~~gg~L~~~l~~~-~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~ 226 (437)
T 4aw2_A 151 LVMDYYVGGDLLTLLSKF-EDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLM 226 (437)
T ss_dssp EEECCCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEEecCCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhhhhcc
Confidence 999999999999999863 346999999999999999999999 7899999999999999999999999999998765
Q ss_pred CCCCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL 786 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (833)
.... ......+||+.|||||++. ...|+.++|||||||++|||++|+.||.+......+... .......
T Consensus 227 ~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i-~~~~~~~---- 300 (437)
T 4aw2_A 227 EDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKI-MNHKERF---- 300 (437)
T ss_dssp TTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH-HTHHHHC----
T ss_pred cCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhh-hhccccc----
Confidence 4332 1234578999999999986 567999999999999999999999999865433322111 1110000
Q ss_pred cccccCCchhHHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHH
Q 003296 787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEA--RPKMKSVLRM 828 (833)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~--Rps~~evl~~ 828 (833)
..+.. ....+.++.+++.+|+..+|++ ||+++|+++|
T Consensus 301 --~~p~~---~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H 339 (437)
T 4aw2_A 301 --QFPTQ---VTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH 339 (437)
T ss_dssp --CCCSS---CCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred --cCCcc---cccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence 00000 0112346789999999998888 9999999875
No 79
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.4e-44 Score=392.26 Aligned_cols=258 Identities=19% Similarity=0.261 Sum_probs=205.8
Q ss_pred HhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296 555 AVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~ 628 (833)
++|+..+.||+|+||.||+|+. .+++.||||+++... .......|.+|+.++++++|||||++++++...+
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~ 147 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC---SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 147 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc---ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence 5677889999999999999994 257789999994221 1223457999999999999999999999999999
Q ss_pred ceEEEEeeCCCCChhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---Cce
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLE-----NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EPQ 700 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~-----~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~k 700 (833)
..++|||||++|+|.++++.... ..+++.+++.++.|+++||+||| +.+|+||||||+|||++.++ .+|
T Consensus 148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~k 224 (367)
T 3l9p_A 148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAK 224 (367)
T ss_dssp SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEE
T ss_pred CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEE
Confidence 99999999999999999985321 35899999999999999999999 78999999999999999554 599
Q ss_pred eccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccc
Q 003296 701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQ 779 (833)
Q Consensus 701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 779 (833)
|+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||...... +........
T Consensus 225 L~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~-~~~~~i~~~- 302 (367)
T 3l9p_A 225 IGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ-EVLEFVTSG- 302 (367)
T ss_dssp ECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-HHHHHHHTT-
T ss_pred ECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHHcC-
Confidence 999999986532222222345678999999999988899999999999999999998 99999754432 222111111
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.... .. ...+.++.+++.+||+.||++|||+.||+++|+.+
T Consensus 303 ~~~~------~~------~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~ 343 (367)
T 3l9p_A 303 GRMD------PP------KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 343 (367)
T ss_dssp CCCC------CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCC------CC------ccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 1000 00 12234678999999999999999999999999864
No 80
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=5.5e-44 Score=385.57 Aligned_cols=256 Identities=20% Similarity=0.295 Sum_probs=198.9
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCce----EEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMS----YFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~----vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
++|+..+.||+|+||.||+|+. .+|+. ||+|++... ......++|.+|++++++++|||||+++++|..++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~- 90 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA---TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST- 90 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC----------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccc---cCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-
Confidence 4678889999999999999996 35544 588887421 22345678999999999999999999999998754
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
.++||||+++|+|.+++... ...+++..++.|+.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++.
T Consensus 91 ~~~v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~ 166 (327)
T 3poz_A 91 VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKL 166 (327)
T ss_dssp EEEEEECCTTCBHHHHHHHS-TTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHH
T ss_pred eEEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeE
Confidence 78999999999999999864 346999999999999999999999 77999999999999999999999999999987
Q ss_pred eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
..............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+...... ... ........
T Consensus 167 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~-~~~~~~~~----- 239 (327)
T 3poz_A 167 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-SSI-LEKGERLP----- 239 (327)
T ss_dssp HTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-HHH-HHTTCCCC-----
T ss_pred ccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHH-HHH-HHcCCCCC-----
Confidence 754443333345667899999999999999999999999999999999 9999975432211 111 11100000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. .....++.+++.+||+.||++|||+.|++++|+.+
T Consensus 240 -~~------~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~ 276 (327)
T 3poz_A 240 -QP------PICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 276 (327)
T ss_dssp -CC------TTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHH
T ss_pred -CC------ccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 00 11234678999999999999999999999999764
No 81
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=6.5e-43 Score=372.88 Aligned_cols=262 Identities=20% Similarity=0.257 Sum_probs=203.1
Q ss_pred HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhc--CCCCCcccceEEEecC----
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK--LSNSNVMTPLAYVLAS---- 627 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~~~~~~~~~---- 627 (833)
.++|+..+.||+|+||.||+|+. +|+.||||++... ..+.+.+|.+++.. ++|||||++++++...
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~ 78 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR-------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSS 78 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG-------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc-------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCC
Confidence 45788889999999999999988 7999999999422 23566777777766 7999999999997653
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----CCCeeecCCCccceeeCCCCCceec
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT-----SNPILLLDLSTRNIFLKSLKEPQIG 702 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~-----~~~iiHrdlk~~Nill~~~~~~ki~ 702 (833)
...++||||+++|+|.++++. ..+++..+..++.|+++||+|||... +.+|+||||||+|||++.++.+||+
T Consensus 79 ~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~ 155 (301)
T 3q4u_A 79 TQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIA 155 (301)
T ss_dssp EEEEEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEEC
T ss_pred ceeEEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEe
Confidence 458999999999999999964 46999999999999999999999432 5689999999999999999999999
Q ss_pred cceeeeeeCCCCCCC--ccccccccccccccccccCC------cccccCcchhhHHHHHHHHhC----------CCcccC
Q 003296 703 DIELCKVIDPSKSTG--SLSTVAGSVGYIPPEYAYTM------RVTMAGNVYSFGVILLELLTG----------KTAVNQ 764 (833)
Q Consensus 703 dfgl~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg----------~~p~~~ 764 (833)
|||+++......... ......||+.|+|||++.+. .++.++|||||||++|||+|| +.||.+
T Consensus 156 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~ 235 (301)
T 3q4u_A 156 DLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYD 235 (301)
T ss_dssp CCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred eCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccc
Confidence 999998765433211 12335899999999998876 567899999999999999999 888863
Q ss_pred Ccc---HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 765 GNE---LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 765 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
... .............. .+..+. .......+.++.+++.+||+.||++|||+.||++.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 236 VVPNDPSFEDMRKVVCVDQQ-----RPNIPN-RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp TSCSSCCHHHHHHHHTTSCC-----CCCCCG-GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cCCCCcchhhhhHHHhccCC-----CCCCCh-hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 211 11111111111010 011110 111224567899999999999999999999999999976
No 82
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=390.44 Aligned_cols=258 Identities=17% Similarity=0.170 Sum_probs=206.6
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
.++|+..++||+|+||.||+|+. .+|+.||||++++ .........+.+.+|++++.+++|||||+++++|.+++..|+
T Consensus 60 ~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k-~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~l 138 (412)
T 2vd5_A 60 RDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNK-WDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYL 138 (412)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEH-HHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEE
T ss_pred hhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeH-HHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence 46788999999999999999997 4799999999942 222223345679999999999999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
|||||++|+|.+++... ...+++..+..++.|++.||+||| +.+||||||||+|||++.++.+||+|||+++....
T Consensus 139 VmE~~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~ 214 (412)
T 2vd5_A 139 VMEYYVGGDLLTLLSKF-GERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRA 214 (412)
T ss_dssp EECCCCSCBHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEcCCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhheeccC
Confidence 99999999999999753 236899999999999999999999 78999999999999999999999999999987754
Q ss_pred CCCCCcccccccccccccccccc-------CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAY-------TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI 785 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 785 (833)
... ......+||+.|||||++. ...|+.++|||||||++|||++|+.||.+......+... ........
T Consensus 215 ~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i-~~~~~~~~-- 290 (412)
T 2vd5_A 215 DGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKI-VHYKEHLS-- 290 (412)
T ss_dssp TSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH-HTHHHHCC--
T ss_pred CCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHH-HhcccCcC--
Confidence 332 1223568999999999987 457999999999999999999999999865443222111 11000000
Q ss_pred ccccccCCchhHHHHHHHHHHHHHhccCCCCCCC---CCHHHHHHH
Q 003296 786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEAR---PKMKSVLRM 828 (833)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~R---ps~~evl~~ 828 (833)
.+ ......+.++.+++.+||. +|++| |+++||++|
T Consensus 291 ----~p---~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H 328 (412)
T 2vd5_A 291 ----LP---LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH 328 (412)
T ss_dssp ----CC-------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred ----CC---ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence 00 0011234578899999999 99998 699999865
No 83
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=389.19 Aligned_cols=258 Identities=20% Similarity=0.230 Sum_probs=209.5
Q ss_pred HhcCCccccccCcccEEEEEEcC--------CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP--------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL 625 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~ 625 (833)
+.|...+.||+|+||.||+|+.. ++..||||+++... .....+.+.+|+++++++ +|||||+++++|.
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 145 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA---TEKDLSDLISEMEMMKMIGKHKNIINLLGACT 145 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc---CHHHHHHHHHHHHHHHHhcCCchhhhheeeec
Confidence 56778899999999999999852 34679999995321 122346799999999999 8999999999999
Q ss_pred cCCceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296 626 ASDSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI 691 (833)
Q Consensus 626 ~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni 691 (833)
.++..++||||+++|+|.+++.... ...+++.+++.|+.|++.||+||| +.+|+||||||+||
T Consensus 146 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NI 222 (382)
T 3tt0_A 146 QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNV 222 (382)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGE
T ss_pred cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceE
Confidence 9999999999999999999998643 135899999999999999999999 78999999999999
Q ss_pred eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296 692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK 770 (833)
Q Consensus 692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~ 770 (833)
|+++++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||++ |+.||.+... .+
T Consensus 223 ll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~-~~ 301 (382)
T 3tt0_A 223 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV-EE 301 (382)
T ss_dssp EECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-HH
T ss_pred EEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH-HH
Confidence 999999999999999987654433233345678999999999999899999999999999999999 9999975432 22
Q ss_pred HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...... ..... .... ..+.++.+++.+||+.||++|||++||+++|+++
T Consensus 302 ~~~~~~-~~~~~------~~~~------~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 350 (382)
T 3tt0_A 302 LFKLLK-EGHRM------DKPS------NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 350 (382)
T ss_dssp HHHHHH-TTCCC------CCCS------SCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCC------CCCc------cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 221111 11110 0001 1234678999999999999999999999999875
No 84
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=374.06 Aligned_cols=268 Identities=15% Similarity=0.172 Sum_probs=209.3
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC--ceE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD--SAY 631 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~--~~~ 631 (833)
..|...+.||+|+||.||+|+.. +|+.||||++... ......+.+.+|++++++++|||||++++++...+ ..+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 85 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNI---SFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV 85 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGG---GGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccc---cccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence 35777899999999999999975 6999999999522 12334678899999999999999999999998765 789
Q ss_pred EEEeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee----CCCCCceecccee
Q 003296 632 LFYEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL----KSLKEPQIGDIEL 706 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill----~~~~~~ki~dfgl 706 (833)
+||||+++|+|.+++..... ..+++.++..++.|+++||+||| +.+|+||||||+||++ +.++.+||+|||+
T Consensus 86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~ 162 (319)
T 4euu_A 86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA 162 (319)
T ss_dssp EEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCC
Confidence 99999999999999986432 24999999999999999999999 7899999999999999 7888899999999
Q ss_pred eeeeCCCCCCCcccccccccccccccccc--------CCcccccCcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHh
Q 003296 707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAY--------TMRVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRN 775 (833)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~ 775 (833)
++....... .....||+.|+|||++. +..++.++|||||||++|||+||+.||..... ..+.....
T Consensus 163 a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~ 239 (319)
T 4euu_A 163 ARELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI 239 (319)
T ss_dssp CEECCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHH
T ss_pred ceecCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHH
Confidence 988754432 24567999999999875 56789999999999999999999999974221 11221111
Q ss_pred hccc--cccccc---------ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296 776 SAQQ--DKLDHI---------LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831 (833)
Q Consensus 776 ~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~ 831 (833)
.... .....+ .....+............+.+++.+||+.||++|||++|++++..+
T Consensus 240 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d 306 (319)
T 4euu_A 240 ITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD 306 (319)
T ss_dssp HHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred hcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHH
Confidence 1110 000000 0011111112234566778899999999999999999999999875
No 85
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=2.8e-43 Score=382.21 Aligned_cols=252 Identities=21% Similarity=0.211 Sum_probs=206.6
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~ 631 (833)
.++|+..+.||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|.++++++ +||||+++++++.+.+..|
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~-~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILK-KDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEE-HHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE-HHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 356888899999999999999975 68999999994 32223344567899999999998 7999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
+||||+++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++...
T Consensus 98 lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 172 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQ--VGRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 172 (353)
T ss_dssp EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence 99999999999999986 346899999999999999999999 7899999999999999999999999999998643
Q ss_pred CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
.... .....+||+.|||||++.+..++.++|||||||++|||++|+.||.+.... +........... .+
T Consensus 173 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~-~~~~~i~~~~~~--------~p 241 (353)
T 2i0e_A 173 WDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED-ELFQSIMEHNVA--------YP 241 (353)
T ss_dssp CTTC--CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCCC--------CC
T ss_pred cCCc--ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHH-HHHHHHHhCCCC--------CC
Confidence 2221 235678999999999999999999999999999999999999999754432 222111111000 11
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM 828 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~ 828 (833)
...+.++.+++.+||+.||++||+ ++||++|
T Consensus 242 ------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h 277 (353)
T 2i0e_A 242 ------KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 277 (353)
T ss_dssp ------TTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred ------CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence 122457889999999999999995 5777654
No 86
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=2.7e-43 Score=376.26 Aligned_cols=260 Identities=23% Similarity=0.317 Sum_probs=200.7
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
..|...+.||+|+||.||+|... ..+|||+++.... .....+.|.+|++++++++|||||++++++. .+..++||
T Consensus 36 ~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~ 110 (307)
T 3lb7_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDP--TPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVT 110 (307)
T ss_dssp TSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred cceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCC--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEE
Confidence 45777899999999999999864 3589998853221 1223467999999999999999999999875 56689999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
||+++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+|||+++++.+||+|||+++......
T Consensus 111 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~ 186 (307)
T 3lb7_A 111 QWCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp ECCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC-----
T ss_pred ecCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCChhhEEEcCCCCEEEccCCCceeccccc
Confidence 999999999999753 456999999999999999999999 7789999999999999999999999999998654322
Q ss_pred CCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 715 STGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
.........||+.|+|||++. +..++.++|||||||++|||++|+.||................ .. .+...
T Consensus 187 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~-~~-----~~~~~ 260 (307)
T 3lb7_A 187 GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRG-YA-----SPDLS 260 (307)
T ss_dssp -------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHT-CC-----CCCST
T ss_pred ccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHhcC-CC-----Ccchh
Confidence 222334568999999999886 5668999999999999999999999998655543332221111 00 01110
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. ....+.++.+++.+||+.||++||++.||+++|+.+
T Consensus 261 ~~---~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l 298 (307)
T 3lb7_A 261 KL---YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELL 298 (307)
T ss_dssp TS---CSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHH
T ss_pred hh---hcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHH
Confidence 00 012235678999999999999999999999999865
No 87
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=1.6e-43 Score=371.56 Aligned_cols=257 Identities=23% Similarity=0.291 Sum_probs=194.9
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
+.|+..+.||+|+||.||+|.. .|..||||++............+.+.+|++++++++||||++++++|..++..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 3567788999999999999997 489999999853322222344578999999999999999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC--------CCCceecccee
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS--------LKEPQIGDIEL 706 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~--------~~~~ki~dfgl 706 (833)
||+++|+|.+++.. ..+++..+..++.|+++||+|||+....+|+||||||+||+++. ++.+|++|||+
T Consensus 86 e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~ 162 (271)
T 3dtc_A 86 EFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL 162 (271)
T ss_dssp ECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC
T ss_pred EcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCc
Confidence 99999999999964 46899999999999999999999432233999999999999986 67899999999
Q ss_pred eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296 707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL 786 (833)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (833)
++....... ....||+.|+|||++.+..++.++|||||||++|||++|+.||.+............ . . ..
T Consensus 163 ~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~-~-~-~~--- 232 (271)
T 3dtc_A 163 AREWHRTTK----MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAM-N-K-LA--- 232 (271)
T ss_dssp -----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHT-S-C-CC---
T ss_pred ccccccccc----cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhc-C-C-CC---
Confidence 986543321 245799999999999888899999999999999999999999976443322111111 1 0 00
Q ss_pred cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.... ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 233 -~~~~------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 233 -LPIP------STCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp -CCCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred -CCCC------cccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 0011 12234688999999999999999999999999875
No 88
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=2.6e-43 Score=381.49 Aligned_cols=254 Identities=19% Similarity=0.283 Sum_probs=202.1
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC---
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD--- 628 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~--- 628 (833)
..++|+..+.||+|+||.||+|+.. +|+.||||++.... .....+.+.+|++++++++|||||+++++|.+.+
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 80 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN---RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEK 80 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS---TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC---chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccch
Confidence 4568999999999999999999975 89999999995322 2234578999999999999999999999986543
Q ss_pred ------------------------------------------------------ceEEEEeeCCCCChhhhhhcCCC-CC
Q 003296 629 ------------------------------------------------------SAYLFYEYAPKGTLFDVLHGCLE-NA 653 (833)
Q Consensus 629 ------------------------------------------------------~~~lv~ey~~~g~L~~~l~~~~~-~~ 653 (833)
..++|||||++|+|.+++..... ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~ 160 (332)
T 3qd2_B 81 WQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLED 160 (332)
T ss_dssp HHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGG
T ss_pred hhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccc
Confidence 27999999999999999986432 35
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC----------Ccccccc
Q 003296 654 LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST----------GSLSTVA 723 (833)
Q Consensus 654 l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~----------~~~~~~~ 723 (833)
.++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++........ ......+
T Consensus 161 ~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
T 3qd2_B 161 REHGVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQV 237 (332)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccC
Confidence 678889999999999999999 789999999999999999999999999999887543211 1123467
Q ss_pred ccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHH
Q 003296 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT 803 (833)
Q Consensus 724 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (833)
||+.|+|||++.+..++.++|||||||++|||++|..|+...... ... ... . ...........+
T Consensus 238 gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~---~~~-~~~-~-----------~~~~~~~~~~~~ 301 (332)
T 3qd2_B 238 GTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRI---ITD-VRN-L-----------KFPLLFTQKYPQ 301 (332)
T ss_dssp -CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHH---HHH-HHT-T-----------CCCHHHHHHCHH
T ss_pred CCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHH---HHH-hhc-c-----------CCCcccccCChh
Confidence 999999999999989999999999999999999998876421111 100 000 0 111223344567
Q ss_pred HHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 804 VLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 804 ~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
+.+++.+||+.||++|||++|++++
T Consensus 302 ~~~li~~~l~~~p~~Rps~~~~l~~ 326 (332)
T 3qd2_B 302 EHMMVQDMLSPSPTERPEATDIIEN 326 (332)
T ss_dssp HHHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred HHHHHHHHccCCCCcCCCHHHHhhc
Confidence 7899999999999999999999975
No 89
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=2.6e-43 Score=378.39 Aligned_cols=258 Identities=19% Similarity=0.221 Sum_probs=208.8
Q ss_pred HhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296 555 AVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~ 628 (833)
..|...+.||+|+||.||+|.. .++..||||++.... .....+.+.+|++++++++|||||++++++..++
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 99 (314)
T 2ivs_A 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA---SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG 99 (314)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC---CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC
Confidence 4677889999999999999985 246889999995322 1223467999999999999999999999999999
Q ss_pred ceEEEEeeCCCCChhhhhhcCCC----------------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCC
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLE----------------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~----------------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdl 686 (833)
..++||||+++|+|.+++..... ..+++.++..++.|+++||+||| +.+|+||||
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~di 176 (314)
T 2ivs_A 100 PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDL 176 (314)
T ss_dssp SCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCC
T ss_pred ceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCccccc
Confidence 99999999999999999986432 24899999999999999999999 788999999
Q ss_pred CccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCC
Q 003296 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQG 765 (833)
Q Consensus 687 k~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~ 765 (833)
||+||++++++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.
T Consensus 177 kp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 256 (314)
T 2ivs_A 177 AARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI 256 (314)
T ss_dssp SGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred chheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999987754432222234568899999999998889999999999999999999 99999754
Q ss_pred ccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 766 NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.....+. . ...... .... ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 257 ~~~~~~~-~-~~~~~~------~~~~------~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~ 309 (314)
T 2ivs_A 257 PPERLFN-L-LKTGHR------MERP------DNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM 309 (314)
T ss_dssp CGGGHHH-H-HHTTCC------CCCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHHHHH-H-hhcCCc------CCCC------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 3321111 1 111000 0000 12235688999999999999999999999999875
No 90
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=1.2e-43 Score=403.60 Aligned_cols=253 Identities=19% Similarity=0.217 Sum_probs=209.3
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..++||+|+||.||+|... +|+.||||++. +...........+.+|+++|++++|||||++++++.+.+..|+|
T Consensus 184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~-k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLE-KKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE-hHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 45778899999999999999974 89999999994 33333344567899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||++|+|.+++.......+++..+..++.||+.||+||| +.+||||||||+|||++.++.+||+|||+++.....
T Consensus 263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~ 339 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 339 (576)
T ss_dssp ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence 99999999999998754456999999999999999999999 779999999999999999999999999999887543
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHhhcccccccccccccc
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRNSAQQDKLDHILDFNV 790 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 790 (833)
. .....+||+.|||||++.+..|+.++|||||||++|||++|+.||.+... ............. ..
T Consensus 340 ~---~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~--------~~ 408 (576)
T 2acx_A 340 Q---TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPE--------EY 408 (576)
T ss_dssp C---CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCC--------CC
T ss_pred c---cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccc--------cC
Confidence 3 22456899999999999998999999999999999999999999985432 1111111111100 01
Q ss_pred cCCchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM 828 (833)
Q Consensus 791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~ 828 (833)
. ...+.++.+++.+||+.||++|| +++||++|
T Consensus 409 p------~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H 445 (576)
T 2acx_A 409 S------ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH 445 (576)
T ss_dssp C------TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred C------ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence 1 12245788999999999999999 78998865
No 91
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-43 Score=384.78 Aligned_cols=260 Identities=21% Similarity=0.287 Sum_probs=208.8
Q ss_pred HHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~ 627 (833)
.++|+..+.||+|+||.||+|... +++.||||+++... .....+.|.+|++++++++|||||+++++|..+
T Consensus 46 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 122 (343)
T 1luf_A 46 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---SADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122 (343)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred HHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence 457888899999999999999974 35889999995321 112346799999999999999999999999999
Q ss_pred CceEEEEeeCCCCChhhhhhcCC----------------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecC
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCL----------------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~----------------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrd 685 (833)
+..++||||+++|+|.+++.... ...+++.+++.++.|+++||+||| +.+|+|||
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~D 199 (343)
T 1luf_A 123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRD 199 (343)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence 99999999999999999997632 146899999999999999999999 78999999
Q ss_pred CCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccC
Q 003296 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQ 764 (833)
Q Consensus 686 lk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~ 764 (833)
|||+||+++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+
T Consensus 200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 279 (343)
T 1luf_A 200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 279 (343)
T ss_dssp CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC
Confidence 999999999999999999999986543322222234678999999999988889999999999999999999 9999975
Q ss_pred CccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 765 GNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
.... +..... ..... .. .. ...+.++.+++.+||+.||++|||+.||+++|+++.
T Consensus 280 ~~~~-~~~~~~-~~~~~-~~-----~~------~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~ 334 (343)
T 1luf_A 280 MAHE-EVIYYV-RDGNI-LA-----CP------ENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC 334 (343)
T ss_dssp SCHH-HHHHHH-HTTCC-CC-----CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred CChH-HHHHHH-hCCCc-CC-----CC------CCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHH
Confidence 4332 221111 11110 00 00 122346789999999999999999999999999863
No 92
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=2.2e-43 Score=373.87 Aligned_cols=264 Identities=17% Similarity=0.240 Sum_probs=201.9
Q ss_pred hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE 635 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e 635 (833)
.|+..+.||+|+||.||+|...+|+.||||++.... ......+.+.+|++++++++|||||++++++..++..++|||
T Consensus 3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (288)
T 1ob3_A 3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEK--EDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE 80 (288)
T ss_dssp SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSS--GGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred cchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccc--cccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEE
Confidence 577788999999999999999889999999995332 223345789999999999999999999999999999999999
Q ss_pred eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296 636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS 715 (833)
Q Consensus 636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~ 715 (833)
|+++ +|.+++... ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 81 ~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 155 (288)
T 1ob3_A 81 HLDQ-DLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR 155 (288)
T ss_dssp CCSE-EHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred ecCC-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcccc
Confidence 9985 999998754 346899999999999999999999 78999999999999999999999999999986543221
Q ss_pred CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh--ccc--ccccc-----c
Q 003296 716 TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS--AQQ--DKLDH-----I 785 (833)
Q Consensus 716 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~--~~~--~~~~~-----~ 785 (833)
......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+............ ... ..... .
T Consensus 156 --~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
T 1ob3_A 156 --KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPK 233 (288)
T ss_dssp --------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTT
T ss_pred --ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccc
Confidence 22346789999999998764 589999999999999999999999986554332221111 000 00000 0
Q ss_pred ccccccC-----CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 786 LDFNVSR-----TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 786 ~~~~~~~-----~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.++.... ..........++.+++.+||+.||++|||++|+++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 281 (288)
T 1ob3_A 234 YDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH 281 (288)
T ss_dssp CCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 0111000 000011234577899999999999999999999875
No 93
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=5.3e-43 Score=379.61 Aligned_cols=253 Identities=15% Similarity=0.213 Sum_probs=202.8
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l 632 (833)
++|+..+.||+|+||.||+|+.. +|+.||||++... ........+.+.+|+++++++ +|||||++++++.+++..|+
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKE-LVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGG-GSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhH-HhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 46788899999999999999974 7899999999532 212222346788999999998 89999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
||||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++....
T Consensus 88 v~e~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp EECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 9999999999999976 346899999999999999999999 78999999999999999999999999999986432
Q ss_pred CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH-------HHHHHHhhccccccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL-------AKWVLRNSAQQDKLDHI 785 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~-------~~~~~~~~~~~~~~~~~ 785 (833)
.. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ..........
T Consensus 163 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~------- 233 (345)
T 3a8x_A 163 PG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE------- 233 (345)
T ss_dssp TT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHH-------
T ss_pred CC--CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHc-------
Confidence 22 1235678999999999999989999999999999999999999999642111 1111111111
Q ss_pred ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHH
Q 003296 786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKM------KSVLRM 828 (833)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~------~evl~~ 828 (833)
.....+ ...+.++.+++.+||+.||++||++ .|+++|
T Consensus 234 --~~~~~p----~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h 276 (345)
T 3a8x_A 234 --KQIRIP----RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 276 (345)
T ss_dssp --CCCCCC----TTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred --CCCCCC----CCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence 011100 1224567899999999999999995 677654
No 94
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=388.45 Aligned_cols=247 Identities=19% Similarity=0.231 Sum_probs=197.3
Q ss_pred ccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296 560 LNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP 638 (833)
Q Consensus 560 ~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~ 638 (833)
.+.||+|+||.||+|.. .+|+.||||+++.... ...+.|.+|++++++++|||||+++++|...+..++|||||+
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~ 169 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM----KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVD 169 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSH----HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc----ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCC
Confidence 56899999999999996 5799999999953221 234679999999999999999999999999999999999999
Q ss_pred CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee--CCCCCceeccceeeeeeCCCCCC
Q 003296 639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL--KSLKEPQIGDIELCKVIDPSKST 716 (833)
Q Consensus 639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill--~~~~~~ki~dfgl~~~~~~~~~~ 716 (833)
+|+|.+++... ...+++..+..++.|+++||+||| +.+|+||||||+|||+ +.++.+||+|||+++......
T Consensus 170 ~~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~-- 243 (373)
T 2x4f_A 170 GGELFDRIIDE-SYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE-- 243 (373)
T ss_dssp TCEEHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC--
T ss_pred CCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc--
Confidence 99999998753 346899999999999999999999 7889999999999999 567889999999999875433
Q ss_pred CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchh
Q 003296 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA 796 (833)
Q Consensus 717 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (833)
.....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+....... ... ....
T Consensus 244 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~-~~~----------~~~~ 311 (373)
T 2x4f_A 244 -KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACR-WDL----------EDEE 311 (373)
T ss_dssp -BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTC-CCS----------CSGG
T ss_pred -ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcc-CCC----------Chhh
Confidence 2234679999999999998889999999999999999999999998655433222111111 000 0111
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 797 VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 797 ~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
......++.+++.+||+.||++|||+.|++++
T Consensus 312 ~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~h 343 (373)
T 2x4f_A 312 FQDISEEAKEFISKLLIKEKSWRISASEALKH 343 (373)
T ss_dssp GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred hccCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 11234578899999999999999999999974
No 95
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=1.9e-43 Score=402.23 Aligned_cols=255 Identities=16% Similarity=0.246 Sum_probs=210.1
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
.+|+..+.||+|+||.||+|+.. ++..||||+++.. ....++|.+|+++|++++|||||+++++|..++..|+|
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv 294 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 294 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS-----SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc-----ccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEE
Confidence 45777899999999999999975 5899999999522 12467899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||++|+|.++++......+++..+..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus 295 ~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 371 (495)
T 1opk_A 295 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGD 371 (495)
T ss_dssp EECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTC
T ss_pred EEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCC
Confidence 99999999999998755567999999999999999999999 789999999999999999999999999999876433
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
... ......+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+..... .... ....... ...
T Consensus 372 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~-~~~~-~~~~~~~------~~~- 441 (495)
T 1opk_A 372 TYT-AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ-VYEL-LEKDYRM------ERP- 441 (495)
T ss_dssp CEE-CCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG-HHHH-HHTTCCC------CCC-
T ss_pred cee-ecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH-HHHH-HHcCCCC------CCC-
Confidence 211 2234567889999999998899999999999999999999 999997543221 1111 1110000 000
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+.++.+++.+||+.||++|||+.||++.|+.+
T Consensus 442 -----~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 442 -----EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred -----CCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 12345678999999999999999999999999875
No 96
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=4.4e-43 Score=378.24 Aligned_cols=252 Identities=18% Similarity=0.219 Sum_probs=195.0
Q ss_pred HhcCCccccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
+.|+..+.||+|+||.||+|+. .+|+.||||+++.............+.+|++++++++|||||++++++..++..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 96 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL 96 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence 4688889999999999999986 478999999995332222223456788999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
|+|||||++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++..
T Consensus 97 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~ 171 (327)
T 3a62_A 97 YLILEYLSGGELFMQLER--EGIFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKES 171 (327)
T ss_dssp EEEEECCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred EEEEeCCCCCcHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence 999999999999999976 346899999999999999999999 779999999999999999999999999999864
Q ss_pred CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV 790 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (833)
..... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+...... ......... ..
T Consensus 172 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~i~~~~~--------~~ 240 (327)
T 3a62_A 172 IHDGT--VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKT-IDKILKCKL--------NL 240 (327)
T ss_dssp ---------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHTCC--------CC
T ss_pred ccCCc--cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHH-HHHHHhCCC--------CC
Confidence 32221 22456899999999999988899999999999999999999999976543222 111111100 01
Q ss_pred cCCchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM 828 (833)
Q Consensus 791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~ 828 (833)
+. ....++.+++.+||+.||++|| ++.|+++|
T Consensus 241 p~------~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h 277 (327)
T 3a62_A 241 PP------YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH 277 (327)
T ss_dssp CT------TSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred CC------CCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence 10 1234678999999999999999 78888875
No 97
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-42 Score=390.99 Aligned_cols=249 Identities=19% Similarity=0.254 Sum_probs=206.4
Q ss_pred hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
.|...+.||+|+||.||+|+.. +|+.||||++. ..........+.+.+|++++++++|||||++++++..++..|+||
T Consensus 17 ~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~-~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILN-RQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEE-HHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEE-hhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 5777889999999999999975 89999999994 222223344678999999999999999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
|||++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++......
T Consensus 96 E~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~ 170 (476)
T 2y94_A 96 EYVSGGELFDYICK--NGRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170 (476)
T ss_dssp ECCSSEEHHHHTTS--SSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence 99999999999975 456999999999999999999999 7899999999999999999999999999999875433
Q ss_pred CCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 715 STGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
...+.+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+..... ........ ....+
T Consensus 171 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~-~~~~i~~~----------~~~~p 236 (476)
T 2y94_A 171 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT-LFKKICDG----------IFYTP 236 (476)
T ss_dssp ---CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH-HHHHHHTT----------CCCCC
T ss_pred ---cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH-HHHHHhcC----------CcCCC
Confidence 2345789999999999988776 689999999999999999999998654322 21111111 00000
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.....++.+++.+||+.||++|||++||++|
T Consensus 237 ----~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~h 267 (476)
T 2y94_A 237 ----QYLNPSVISLLKHMLQVDPMKRATIKDIREH 267 (476)
T ss_dssp ----TTCCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred ----ccCCHHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence 0123467899999999999999999999874
No 98
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=4.9e-43 Score=381.15 Aligned_cols=251 Identities=19% Similarity=0.200 Sum_probs=191.1
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
.+.|+..+.||+|+||.||+|+.. +++.||||++... ...+.+.+|++++++++|||||+++++|..++..++
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 125 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKT------VDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISL 125 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------------CHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc------hhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEE
Confidence 456888899999999999999975 6889999999422 124578899999999999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceeccceeeee
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGDIELCKV 709 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~dfgl~~~ 709 (833)
||||+++|+|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+||+++. ++.+||+|||+++.
T Consensus 126 v~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~ 200 (349)
T 2w4o_A 126 VLELVTGGELFDRIVE--KGYYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKI 200 (349)
T ss_dssp EECCCCSCBHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC----
T ss_pred EEEeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccc
Confidence 9999999999999976 456899999999999999999999 778999999999999975 88999999999987
Q ss_pred eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN 789 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (833)
..... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+................. ..
T Consensus 201 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~---~~--- 271 (349)
T 2w4o_A 201 VEHQV---LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYY---FI--- 271 (349)
T ss_dssp ---------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCC---CC---
T ss_pred cCccc---ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCc---cC---
Confidence 64322 2245689999999999999899999999999999999999999997655433222222111110 00
Q ss_pred ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.......+.++.+++.+||+.||++|||+.|++++
T Consensus 272 ----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 306 (349)
T 2w4o_A 272 ----SPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQH 306 (349)
T ss_dssp ----TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ----CchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 00111234577899999999999999999999875
No 99
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=6e-43 Score=372.52 Aligned_cols=253 Identities=17% Similarity=0.210 Sum_probs=197.2
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh----------------------hccChhHHHHHHHHHhc
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF----------------------QLGSHHKFDKELEVLGK 611 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~----------------------~~~~~~~~~~E~~~l~~ 611 (833)
+.|+..+.||+|+||.||+|+. .+|+.||||++....... .....+.|.+|++++++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 92 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK 92 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence 3577889999999999999996 478999999985332111 01224679999999999
Q ss_pred CCCCCcccceEEEec--CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCcc
Q 003296 612 LSNSNVMTPLAYVLA--SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTR 689 (833)
Q Consensus 612 l~H~niv~~~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~ 689 (833)
++|||||++++++.+ .+..|+||||+++|+|.+++.. ..+++.++..++.|+++||+||| +.+|+||||||+
T Consensus 93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~ 166 (298)
T 2zv2_A 93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKPS 166 (298)
T ss_dssp CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGG
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHH
Confidence 999999999999987 5679999999999999987653 46999999999999999999999 778999999999
Q ss_pred ceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCc---ccccCcchhhHHHHHHHHhCCCcccCCc
Q 003296 690 NIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGKTAVNQGN 766 (833)
Q Consensus 690 Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvvl~elltg~~p~~~~~ 766 (833)
||+++.++.+||+|||+++....... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+..
T Consensus 167 Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~ 244 (298)
T 2zv2_A 167 NLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER 244 (298)
T ss_dssp GEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HEEECCCCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence 99999999999999999987653321 234568999999999987654 4788999999999999999999997543
Q ss_pred cHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 767 ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.. .+........... ... ...+.++.+++.+||+.||++|||+.|+++|
T Consensus 245 ~~-~~~~~~~~~~~~~--------~~~----~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h 293 (298)
T 2zv2_A 245 IM-CLHSKIKSQALEF--------PDQ----PDIAEDLKDLITRMLDKNPESRIVVPEIKLH 293 (298)
T ss_dssp HH-HHHHHHHHCCCCC--------CSS----SCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred HH-HHHHHHhcccCCC--------CCc----cccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence 22 2221111110000 000 0123467899999999999999999999865
No 100
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=5.4e-43 Score=384.70 Aligned_cols=252 Identities=17% Similarity=0.226 Sum_probs=205.9
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|+..+.||+|+||.||+|... +|+.||+|++..... .....+.+|+++|++++|||||+++++|.+.+..++|
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 126 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP----LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI 126 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH----HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccch----hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence 56888999999999999999974 789999999853221 1245789999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC--CCCceeccceeeeeeC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS--LKEPQIGDIELCKVID 711 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~--~~~~ki~dfgl~~~~~ 711 (833)
||||++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+|||++. .+.+||+|||+++...
T Consensus 127 ~E~~~gg~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~ 202 (387)
T 1kob_A 127 LEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLN 202 (387)
T ss_dssp EECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred EEcCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecC
Confidence 9999999999999753 346899999999999999999999 789999999999999974 4779999999998875
Q ss_pred CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+........ ......... +..
T Consensus 203 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~-~i~~~~~~~----~~~-- 272 (387)
T 1kob_A 203 PDE---IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQ-NVKRCDWEF----DED-- 272 (387)
T ss_dssp TTS---CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHH-HHHHCCCCC----CSS--
T ss_pred CCc---ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHH-HHHhCCCCC----Ccc--
Confidence 432 2245689999999999999899999999999999999999999998654432221 111110000 000
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.....+.++.+++.+||+.||++|||+.|++++
T Consensus 273 ----~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 273 ----AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp ----TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred ----ccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 011234578899999999999999999999875
No 101
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=5.1e-43 Score=376.24 Aligned_cols=266 Identities=18% Similarity=0.273 Sum_probs=192.5
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
.+.|+..+.||+|+||.||+|... +|+.||||+++... .....+.+.+|++++++++|||||++++++..++..++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 80 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS---EEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTL 80 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCS---TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc---ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEE
Confidence 456888899999999999999974 79999999995322 22345789999999999999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCC----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296 633 FYEYAPKGTLFDVLHGCL----ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK 708 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~ 708 (833)
||||++ |+|.+++.... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 81 v~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~ 156 (317)
T 2pmi_A 81 VFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLAR 156 (317)
T ss_dssp EEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCE
T ss_pred EEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccce
Confidence 999998 59999987431 235899999999999999999999 7899999999999999999999999999998
Q ss_pred eeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHh--hcc-cccc-c
Q 003296 709 VIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRN--SAQ-QDKL-D 783 (833)
Q Consensus 709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~--~~~-~~~~-~ 783 (833)
....... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+........... ... .... .
T Consensus 157 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 234 (317)
T 2pmi_A 157 AFGIPVN--TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWP 234 (317)
T ss_dssp ETTSCCC--CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCG
T ss_pred ecCCCcc--cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhh
Confidence 7643322 2245679999999999876 468999999999999999999999998655433221111 100 0000 0
Q ss_pred cc-----ccccccC----Cch------hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 784 HI-----LDFNVSR----TSL------AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 784 ~~-----~~~~~~~----~~~------~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.+ ..+.+.. ... .......++.+++.+||+.||++|||++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 294 (317)
T 2pmi_A 235 SVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH 294 (317)
T ss_dssp GGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence 00 0000000 000 000123578899999999999999999999875
No 102
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=3.1e-43 Score=369.23 Aligned_cols=253 Identities=20% Similarity=0.264 Sum_probs=204.3
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~l 632 (833)
++|...+.||+|+||.||+|+. +|+.||||++..... .....+.|.+|++++++++|||||+++++|..+ +..++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 86 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDW--STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTL 86 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTC--CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEE
T ss_pred HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEeccccc--CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEe
Confidence 3577789999999999999998 489999999953211 122346799999999999999999999999887 78899
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeCCCCCceeccceeeeee
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
||||+++|+|.++++......+++.++..++.|+++||+||| +.+ |+||||||+||+++.++.+|++|||++...
T Consensus 87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~ 163 (271)
T 3kmu_A 87 ITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163 (271)
T ss_dssp EEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT
T ss_pred eecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceeee
Confidence 999999999999998754456999999999999999999999 666 999999999999999999999999886542
Q ss_pred CCCCCCCccccccccccccccccccCCcccc---cCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTM---AGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (833)
. .....||+.|+|||++.+..++. ++|||||||++|||++|+.||.+.......... ..... .
T Consensus 164 ~-------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~-~~~~~------~ 229 (271)
T 3kmu_A 164 Q-------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKV-ALEGL------R 229 (271)
T ss_dssp S-------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHH-HHSCC------C
T ss_pred c-------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHH-HhcCC------C
Confidence 2 13457899999999988765554 899999999999999999999755433222111 11110 0
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
+... ...+.++.+++.+||+.||++|||++|+++.|++++
T Consensus 230 ~~~~------~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 230 PTIP------PGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp CCCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred CCCC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 0111 122346789999999999999999999999999864
No 103
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.7e-41 Score=399.33 Aligned_cols=435 Identities=23% Similarity=0.242 Sum_probs=363.3
Q ss_pred CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
+++++|||++|+|+++| +|.++++|++|||++|+|+++.+.+|.++++|++|+|++|+|+++++..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 37999999999999986 5999999999999999999999999999999999999999999988899999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCcEEECcCCcCCCCCCcccccCCccC----ccccccc
Q 003296 86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLASITTLS----RFAANQN 160 (833)
Q Consensus 86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~l~l~~n 160 (833)
++|+++++.+..|+++++|++|+|++|.+++. .|..++.+++|++|+|++|+|++..|..|..+.++. .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 99999988888999999999999999999864 578899999999999999999998888887665544 2344445
Q ss_pred cccccCChhh----------------------------------------------------------------------
Q 003296 161 KFSGSVPGGI---------------------------------------------------------------------- 170 (833)
Q Consensus 161 ~l~~~~p~~~---------------------------------------------------------------------- 170 (833)
.+....+..+
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 4432221111
Q ss_pred -------------hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCcc
Q 003296 171 -------------TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSA 237 (833)
Q Consensus 171 -------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~ 237 (833)
...++.+++.+|.+... ..+.....|+.|++++|.+.+.. ......++.+.+..|.... . .
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~L~~l~l~~n~~~~-~--~ 365 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGN-A--F 365 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCC-CCBCTTCCEEEEESCCSCC-B--C
T ss_pred cccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcC-cccchhhhhcccccccCCC-C--c
Confidence 01133334444443332 23455678999999999987543 3344689999999987543 2 2
Q ss_pred ccCCCCCCCEEECCCCCCCC--CCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCc-hhhcCC
Q 003296 238 TFTSLEKLTYLELDNNSFTG--MIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIP-SQFSQL 314 (833)
Q Consensus 238 ~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l 314 (833)
.+..+++|+.|++++|.+.. ..+..+..+.+|+.|++..|.+.. .+..+..++.|+.++++.|......+ ..|..+
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccc
Confidence 34578999999999999864 456667788999999999998874 45668889999999999887765544 568889
Q ss_pred CcCceeeccCCcCcccCccccccCCCCCEEEccCCcc-ccccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceee
Q 003296 315 KLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL-NGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALN 391 (833)
Q Consensus 315 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~ 391 (833)
.+++.++++.|.+.+..+..+..+++|+.|+|++|++ .+..|..|..+++|++|+|++|+|++..|.....+. +.|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 9999999999999999999999999999999999985 456788999999999999999999998887665544 6899
Q ss_pred ccccccccchhhhhccCCCCCEEecccCcCccccchhccCC-CCCCeeeCcCCcccccC
Q 003296 392 LSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQM-PTLTQLLLTNNQLSGVV 449 (833)
Q Consensus 392 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~ 449 (833)
|++|+|++..|..|.++++|++|||++|+|++..|+.+..+ ++|+.|++++|++++..
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999999999999999999999999999988 58999999999998754
No 104
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=4.2e-43 Score=394.99 Aligned_cols=249 Identities=20% Similarity=0.293 Sum_probs=203.7
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-ceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-SAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-~~~lv 633 (833)
+.|+..+.||+|+||.||+|.. .|+.||||+++.. ...+.|.+|+++|++++|||||+++++|...+ ..|+|
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv 265 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 265 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSC------TTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEE
T ss_pred HHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCc------hHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEE
Confidence 4577789999999999999987 4789999999522 13578999999999999999999999988765 79999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||++|+|.++++......+++..+..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus 266 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~ 342 (450)
T 1k9a_A 266 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 342 (450)
T ss_dssp EECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC--
T ss_pred EEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc
Confidence 99999999999998754445899999999999999999999 789999999999999999999999999999865322
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
. ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+..... .... ....... ..+
T Consensus 343 ~-----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~-~~~~-i~~~~~~------~~p- 408 (450)
T 1k9a_A 343 Q-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD-VVPR-VEKGYKM------DAP- 408 (450)
T ss_dssp ---------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT-HHHH-HHTTCCC------CCC-
T ss_pred c-----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH-HHHH-HHcCCCC------CCC-
Confidence 1 23467899999999999999999999999999999998 999997533211 1111 1111100 001
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus 409 -----~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i 443 (450)
T 1k9a_A 409 -----DGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHI 443 (450)
T ss_dssp -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----CcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 12345788999999999999999999999999876
No 105
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=4.5e-43 Score=372.32 Aligned_cols=264 Identities=18% Similarity=0.231 Sum_probs=203.2
Q ss_pred hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
.|+..+.||+|+||+||+|... +|+.||||++.... ......+.+.+|++++++++|||||++++++.+++..++||
T Consensus 3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 80 (292)
T 3o0g_A 3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF 80 (292)
T ss_dssp SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSC--SSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccC--CcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEE
Confidence 5777899999999999999974 78999999995322 12223467899999999999999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
||+++ ++.+.+... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 81 e~~~~-~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 155 (292)
T 3o0g_A 81 EFCDQ-DLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV 155 (292)
T ss_dssp ECCSE-EHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC
T ss_pred ecCCC-CHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcc
Confidence 99975 666666543 346999999999999999999999 7899999999999999999999999999998764332
Q ss_pred CCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc-----ccc---
Q 003296 715 STGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL-----DHI--- 785 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~-----~~~--- 785 (833)
. ......||+.|+|||++.+.. ++.++||||+||++|||++|..||.................... ...
T Consensus 156 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 233 (292)
T 3o0g_A 156 R--CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKL 233 (292)
T ss_dssp S--CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGS
T ss_pred c--cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccc
Confidence 2 224568999999999987765 89999999999999999999988765544433322221110000 000
Q ss_pred cccc-------ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 786 LDFN-------VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 786 ~~~~-------~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.+.. .............++.+++.+||+.||++|||++|+++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 283 (292)
T 3o0g_A 234 PDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp TTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred ccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 0000 000000011234577899999999999999999999875
No 106
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4e-43 Score=382.07 Aligned_cols=260 Identities=20% Similarity=0.257 Sum_probs=208.0
Q ss_pred HHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA 626 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~ 626 (833)
.++|+..+.||+|+||.||+|.. .++..||||++.... .....+.+.+|+++++++ +|||||++++++..
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 120 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA---DSSEREALMSELKMMTQLGSHENIVNLLGACTL 120 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc---CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence 45788889999999999999995 256789999995221 223457899999999999 89999999999999
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCC---------------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecC
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLE---------------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~---------------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrd 685 (833)
.+..++||||+++|+|.+++..... ..++|..+..++.|++.||+||| +.+|+|||
T Consensus 121 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~D 197 (344)
T 1rjb_A 121 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRD 197 (344)
T ss_dssp SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETT
T ss_pred CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCC
Confidence 9999999999999999999986432 23799999999999999999999 78999999
Q ss_pred CCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccC
Q 003296 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQ 764 (833)
Q Consensus 686 lk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~ 764 (833)
|||+||+++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+
T Consensus 198 ikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 277 (344)
T 1rjb_A 198 LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPG 277 (344)
T ss_dssp CSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCccc
Confidence 999999999999999999999987654333222344678899999999988889999999999999999998 9999975
Q ss_pred CccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 765 GNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.......... ...... .... ...+.++.+++.+||+.||++|||+.|++++|+.+
T Consensus 278 ~~~~~~~~~~-~~~~~~------~~~~------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 332 (344)
T 1rjb_A 278 IPVDANFYKL-IQNGFK------MDQP------FYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQ 332 (344)
T ss_dssp CCCSHHHHHH-HHTTCC------CCCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCcHHHHHHH-HhcCCC------CCCC------CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence 4432221111 111000 0000 11234678999999999999999999999999864
No 107
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=1.5e-42 Score=367.38 Aligned_cols=255 Identities=21% Similarity=0.328 Sum_probs=202.0
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh---hccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF---QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
+.|+..+.||+|+||.||+|+. .+++.||||++....... .....+.|.+|++++++++|||||++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 4577789999999999999997 589999999985322111 1122378999999999999999999999987654
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeCCCCC-----ceecc
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLKSLKE-----PQIGD 703 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~~~~~-----~ki~d 703 (833)
++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+ |+||||||+||+++.++. +||+|
T Consensus 97 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D 172 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLDK-AHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVAD 172 (287)
T ss_dssp EEEEECCTTCBHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred eEEEEecCCCCHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence 7999999999999988753 346999999999999999999999 667 999999999999988776 99999
Q ss_pred ceeeeeeCCCCCCCcccccccccccccccccc--CCcccccCcchhhHHHHHHHHhCCCcccCCccHH-HHHHHhhcccc
Q 003296 704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY--TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA-KWVLRNSAQQD 780 (833)
Q Consensus 704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~-~~~~~~~~~~~ 780 (833)
||+++.... ......||+.|+|||++. ...++.++||||+||++|||++|+.||....... .+....... .
T Consensus 173 fg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~-~ 246 (287)
T 4f0f_A 173 FGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREE-G 246 (287)
T ss_dssp CTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHS-C
T ss_pred CCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhcc-C
Confidence 999975432 224568999999999983 5568899999999999999999999997543221 111111111 1
Q ss_pred cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. +... ...+.++.+++.+||+.||++|||++|+++.|+++
T Consensus 247 -~~----~~~~------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 247 -LR----PTIP------EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp -CC----CCCC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred -CC----CCCC------cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 00 1111 12235688999999999999999999999999875
No 108
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=2.1e-43 Score=398.23 Aligned_cols=255 Identities=19% Similarity=0.275 Sum_probs=207.8
Q ss_pred HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
.+.|+..+.||+|+||.||+|...++..||||+++.. ....++|.+|+++|++++|||||++++++. .+..++|
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv 260 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-----SMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYII 260 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT-----SBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC-----CccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEE
Confidence 3567788999999999999999988999999999532 134678999999999999999999999986 6678999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||++|+|.++++......+++.++..++.|+|+||+||| +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus 261 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~ 337 (454)
T 1qcf_A 261 TEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDN 337 (454)
T ss_dssp ECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH
T ss_pred EeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC
Confidence 99999999999998543346899999999999999999999 778999999999999999999999999999876432
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
... ......+|+.|+|||++....++.++|||||||++|||+| |+.||.+.... +..... ...... ..
T Consensus 338 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~-~~~~~i-~~~~~~--------~~ 406 (454)
T 1qcf_A 338 EYT-AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP-EVIRAL-ERGYRM--------PR 406 (454)
T ss_dssp HHH-TTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-HHHHHH-HHTCCC--------CC
T ss_pred cee-ccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH-HHHHHH-HcCCCC--------CC
Confidence 111 1123457889999999988889999999999999999999 99999754332 211111 111110 00
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
+...+.++.+++.+||+.||++|||+++|++.|+++
T Consensus 407 ----~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~ 442 (454)
T 1qcf_A 407 ----PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF 442 (454)
T ss_dssp ----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred ----CCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence 012345788999999999999999999999999875
No 109
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=2.9e-43 Score=379.09 Aligned_cols=245 Identities=18% Similarity=0.227 Sum_probs=182.3
Q ss_pred ccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEEeeC
Q 003296 560 LNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFYEYA 637 (833)
Q Consensus 560 ~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~ey~ 637 (833)
.+.||+|+||.||+|... +|+.||||++... ....+.+|++++++++ |||||+++++|.+++..|+|||||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~ 88 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELL 88 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh-------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEcc
Confidence 378999999999999974 7999999999421 2457889999999997 999999999999999999999999
Q ss_pred CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---CceeccceeeeeeCCCC
Q 003296 638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EPQIGDIELCKVIDPSK 714 (833)
Q Consensus 638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~ki~dfgl~~~~~~~~ 714 (833)
++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+++......
T Consensus 89 ~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~ 163 (325)
T 3kn6_A 89 NGGELFERIKK--KKHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN 163 (325)
T ss_dssp CSCBHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC--
T ss_pred CCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC
Confidence 99999999986 456999999999999999999999 78999999999999997665 79999999998765332
Q ss_pred CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc------HHHHHHHhhcccccccccccc
Q 003296 715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE------LAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 788 (833)
. .....+||+.|+|||++.+..++.++|||||||++|||++|+.||..... ..+.... +...
T Consensus 164 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~----------i~~~ 231 (325)
T 3kn6_A 164 Q--PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKK----------IKKG 231 (325)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHH----------HTTT
T ss_pred C--cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHH----------HHcC
Confidence 2 23456799999999999998999999999999999999999999974322 1111111 1111
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
........+...+.++.+++.+||+.||++|||++|+++|
T Consensus 232 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 271 (325)
T 3kn6_A 232 DFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN 271 (325)
T ss_dssp CCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred CCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence 1111222233456678899999999999999999998754
No 110
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=8e-43 Score=368.63 Aligned_cols=254 Identities=17% Similarity=0.224 Sum_probs=205.0
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
++|+..+.||+|+||.||+|...++..||||++... ....++|.+|++++++++|||||+++++|..++..++||
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 98 (283)
T 3gen_A 24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-----SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT 98 (283)
T ss_dssp GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT-----SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC-----CCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEE
Confidence 467788999999999999999988999999999422 123467999999999999999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
||+++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 99 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 174 (283)
T 3gen_A 99 EYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 174 (283)
T ss_dssp CCCTTCBHHHHHHCG-GGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH
T ss_pred eccCCCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccc
Confidence 999999999999753 235999999999999999999999 7899999999999999999999999999998654321
Q ss_pred CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
. .......||+.|+|||++.+..++.++||||+||++|||+| |+.||......... ...... . .. ....
T Consensus 175 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~-~~~~~~-~--~~----~~~~- 244 (283)
T 3gen_A 175 Y-TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETA-EHIAQG-L--RL----YRPH- 244 (283)
T ss_dssp H-HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH-HHHHTT-C--CC----CCCT-
T ss_pred c-ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHH-HHHhcc-c--CC----CCCC-
Confidence 1 11234567889999999998889999999999999999998 99999754432211 111111 0 00 0000
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
..+..+.+++.+||+.||++|||++|++++|+++
T Consensus 245 -----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~ 278 (283)
T 3gen_A 245 -----LASEKVYTIMYSCWHEKADERPTFKILLSNILDV 278 (283)
T ss_dssp -----TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----cCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence 1134678999999999999999999999999875
No 111
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=5.8e-43 Score=382.46 Aligned_cols=250 Identities=21% Similarity=0.211 Sum_probs=193.9
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHH-HhcCCCCCcccceEEEecCCceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEV-LGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~-l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
++|+..+.||+|+||.||+|+.. +++.||||+++.. ........+.+.+|..+ ++.++|||||+++++|.+.+..|+
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~-~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKK-AILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGG-GBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHH-HhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 56888999999999999999974 6899999999532 22223344567788887 577999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
||||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++....
T Consensus 117 v~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~ 191 (373)
T 2r5t_A 117 VLDYINGGELFYHLQR--ERCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE 191 (373)
T ss_dssp EEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred EEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence 9999999999999986 346899999999999999999999 78999999999999999999999999999986432
Q ss_pred CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
... .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+......+ ......... +..
T Consensus 192 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~-~~i~~~~~~--------~~~ 260 (373)
T 2r5t_A 192 HNS--TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMY-DNILNKPLQ--------LKP 260 (373)
T ss_dssp CCC--CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHH-HHHHHSCCC--------CCS
T ss_pred CCC--ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHhcccC--------CCC
Confidence 221 235678999999999999989999999999999999999999999765432222 111111000 111
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR 827 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~ 827 (833)
....++.+++.+||+.||++||++.+.+.
T Consensus 261 ------~~~~~~~~li~~lL~~dp~~R~~~~~~~~ 289 (373)
T 2r5t_A 261 ------NITNSARHLLEGLLQKDRTKRLGAKDDFM 289 (373)
T ss_dssp ------SSCHHHHHHHHHHTCSSGGGSTTTTTTHH
T ss_pred ------CCCHHHHHHHHHHcccCHHhCCCCCCCHH
Confidence 12346789999999999999999854333
No 112
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1.1e-42 Score=374.53 Aligned_cols=257 Identities=18% Similarity=0.221 Sum_probs=209.2
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhh--ccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQ--LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
..+.|+..+.||+|+||.||+|... +|+.||||++........ ....++|.+|++++++++|||||++++++..++.
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 89 (321)
T 2a2a_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD 89 (321)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence 4567899999999999999999974 799999999953321111 1235789999999999999999999999999999
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC----Cceeccce
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK----EPQIGDIE 705 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~----~~ki~dfg 705 (833)
.++||||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+|++|||
T Consensus 90 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg 164 (321)
T 2a2a_A 90 VVLILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (321)
T ss_dssp EEEEECCCCSCBHHHHHHT--CSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred EEEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence 9999999999999999986 456899999999999999999999 78999999999999999887 79999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI 785 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 785 (833)
+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+........ ........
T Consensus 165 ~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~i~~~~~~---- 236 (321)
T 2a2a_A 165 LAHEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA-NITSVSYD---- 236 (321)
T ss_dssp TCEECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHH-HHHTTCCC----
T ss_pred cceecCccc---cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHhcccc----
Confidence 998765432 2245679999999999998899999999999999999999999997544322221 11111000
Q ss_pred ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.........+..+.+++.+||+.||++|||+.|+++|
T Consensus 237 ------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h 273 (321)
T 2a2a_A 237 ------FDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (321)
T ss_dssp ------CCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred ------cChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 0011111234568899999999999999999999875
No 113
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=371.97 Aligned_cols=252 Identities=21% Similarity=0.328 Sum_probs=195.7
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
++|+..+.||+|+||.||+|.. .++.||||++... ...+.|.+|++++++++|||||++++++. +..++||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~ 78 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE------SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVM 78 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST------THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEE
T ss_pred hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh------hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEE
Confidence 3577789999999999999987 4789999999421 23468999999999999999999999887 4589999
Q ss_pred eeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC-ceeccceeeeeeCC
Q 003296 635 EYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE-PQIGDIELCKVIDP 712 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~-~ki~dfgl~~~~~~ 712 (833)
||+++|+|.++++.... ..+++..++.++.|+++||+|||+....+|+||||||+||+++.++. +||+|||+++....
T Consensus 79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~ 158 (307)
T 2eva_A 79 EYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 158 (307)
T ss_dssp ECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------
T ss_pred EcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc
Confidence 99999999999986432 24789999999999999999999543378999999999999998886 79999999976532
Q ss_pred CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
. .....||+.|+|||++.+..++.++|||||||++|||+||+.||................... . ...
T Consensus 159 ~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~-~-----~~~- 226 (307)
T 2eva_A 159 H-----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTR-P-----PLI- 226 (307)
T ss_dssp -----------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCC-C-----CCB-
T ss_pred c-----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCC-C-----Ccc-
Confidence 2 134579999999999999899999999999999999999999997533221111111111000 0 000
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+..+.+++.+||+.||++|||++|++++|+++
T Consensus 227 -----~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 261 (307)
T 2eva_A 227 -----KNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 261 (307)
T ss_dssp -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 11234678999999999999999999999999875
No 114
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=7.1e-43 Score=376.62 Aligned_cols=256 Identities=22% Similarity=0.290 Sum_probs=200.7
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCce----EEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMS----YFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~----vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
+.|+..+.||+|+||.||+|+. .+|+. ||+|.+... ......+.+.+|+.++++++|||||+++++|. .+.
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~ 88 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDK---SGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSS 88 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCT---TSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSS
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEecccc---ccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCc
Confidence 3567788999999999999996 45555 777777322 12234467889999999999999999999986 567
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
.++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++.
T Consensus 89 ~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~ 164 (325)
T 3kex_A 89 LQLVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADL 164 (325)
T ss_dssp EEEEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGG
T ss_pred cEEEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccc
Confidence 89999999999999999853 346899999999999999999999 77899999999999999999999999999987
Q ss_pred eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
..............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+...... .... ....... .
T Consensus 165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~-~~~~-~~~~~~~---~- 238 (325)
T 3kex_A 165 LPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEV-PDLL-EKGERLA---Q- 238 (325)
T ss_dssp SCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHH-HHHH-HTTCBCC---C-
T ss_pred cCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHH-HHHH-HcCCCCC---C-
Confidence 754443333345678899999999998899999999999999999999 9999975432211 1111 1101000 0
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. ..+.++.+++.+||+.||++|||++|++++|+++
T Consensus 239 --~~------~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~ 274 (325)
T 3kex_A 239 --PQ------ICTIDVYMVMVKCWMIDENIRPTFKELANEFTRM 274 (325)
T ss_dssp --CT------TBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHH
T ss_pred --CC------cCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 00 1123567899999999999999999999999865
No 115
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=3.9e-43 Score=376.79 Aligned_cols=259 Identities=22% Similarity=0.291 Sum_probs=209.5
Q ss_pred HhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC
Q 003296 555 AVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS 627 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~ 627 (833)
+.|...+.||+|+||.||+|+. .+++.||||++..... ....+.+.+|+++++++ +|||||+++++|..+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~ 99 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHMNIVNLLGACTIG 99 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchh---HHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC
Confidence 4677889999999999999984 3678999999953221 12347899999999999 999999999999999
Q ss_pred CceEEEEeeCCCCChhhhhhcCCC----------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLE----------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI 691 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~----------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni 691 (833)
+..++||||+++|+|.+++..... ..+++.++..++.|+++||+||| +.+|+||||||+||
T Consensus 100 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Ni 176 (313)
T 1t46_A 100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNI 176 (313)
T ss_dssp SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGE
T ss_pred CCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceE
Confidence 999999999999999999986432 24899999999999999999999 78999999999999
Q ss_pred eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296 692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK 770 (833)
Q Consensus 692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~ 770 (833)
+++.++.+|++|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+......
T Consensus 177 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~ 256 (313)
T 1t46_A 177 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK 256 (313)
T ss_dssp EEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH
T ss_pred EEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH
Confidence 999999999999999987654433222334568899999999988889999999999999999999 9999975443222
Q ss_pred HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
........ .... .. ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 257 ~~~~~~~~---~~~~----~~------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 305 (313)
T 1t46_A 257 FYKMIKEG---FRML----SP------EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305 (313)
T ss_dssp HHHHHHHT---CCCC----CC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHhccC---CCCC----Cc------ccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence 21111110 0000 00 11234678999999999999999999999999874
No 116
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=7.9e-43 Score=386.22 Aligned_cols=266 Identities=14% Similarity=0.171 Sum_probs=205.6
Q ss_pred HhcCCccccccC--cccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 555 AVANPLNVELKT--RFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 555 ~~~~~~~~ig~g--~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
..|+..+.||+| +||.||+|+.. +|+.||||++..... .....+.+.+|++++++++|||||+++++|..++..|
T Consensus 25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEAC--SNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEeccccc--ChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 467888999999 99999999975 799999999953211 1223467889999999999999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
+|||||++|+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||.+....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 9999999999999998754567999999999999999999999 7889999999999999999999999999986543
Q ss_pred CCCC-----CCccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296 712 PSKS-----TGSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH 784 (833)
Q Consensus 712 ~~~~-----~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 784 (833)
.... .......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.............. ...
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~---~~~ 256 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGT---VPC 256 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCC---CCc
Confidence 2111 111233579999999999987 579999999999999999999999997544332221111000 000
Q ss_pred ccccc---------------------------cc-------CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 785 ILDFN---------------------------VS-------RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 785 ~~~~~---------------------------~~-------~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..+.. .. ...........++.+++.+||+.||++|||++|+++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h 334 (389)
T 3gni_B 257 LLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH 334 (389)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred cccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence 00000 00 0000112234578899999999999999999999876
No 117
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=6.1e-44 Score=379.61 Aligned_cols=267 Identities=21% Similarity=0.296 Sum_probs=201.9
Q ss_pred HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-- 627 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-- 627 (833)
+.|+..+.||+|+||.||+|+. .+|+.||||++..... ...+.|.+|++++++++|||||+++++|...
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 85 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 85 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCH----HHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHH
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCH----HHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence 4677889999999999999983 3789999999953221 2346799999999999999999999999754
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
...++||||+++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~ 161 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLT 161 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSC
T ss_pred CceEEEEEeCCCCCHHHHHHhc-ccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCccc
Confidence 5689999999999999999864 235899999999999999999999 789999999999999999999999999999
Q ss_pred eeeCCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc------
Q 003296 708 KVIDPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD------ 780 (833)
Q Consensus 708 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~------ 780 (833)
+........ .......||+.|+|||++.+..++.++|||||||++|||+||..|+..... .+.........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~ 239 (295)
T 3ugc_A 162 KVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA--EFMRMIGNDKQGQMIVF 239 (295)
T ss_dssp C-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHH--HHHHHHCTTCCTHHHHH
T ss_pred ccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChH--HHHhhhcCccccchhHH
Confidence 876433221 112345678889999999988999999999999999999999999863211 11100000000
Q ss_pred cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
.....+....... .....+.++.+++.+||+.||++|||++|++++|++++
T Consensus 240 ~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~ 290 (295)
T 3ugc_A 240 HLIELLKNNGRLP--RPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 290 (295)
T ss_dssp HHHHHHHTTCCCC--CCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHhccCcCC--CCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 0000000000000 01123457889999999999999999999999998864
No 118
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=5.4e-43 Score=387.56 Aligned_cols=245 Identities=16% Similarity=0.141 Sum_probs=190.8
Q ss_pred hcCCc-cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhc-CCCCCcccceEEEec----CC
Q 003296 556 VANPL-NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK-LSNSNVMTPLAYVLA----SD 628 (833)
Q Consensus 556 ~~~~~-~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~-l~H~niv~~~~~~~~----~~ 628 (833)
+|... ++||+|+||+||+|... +|+.||||++.. ...+.+|++++.+ .+|||||+++++|.. .+
T Consensus 62 ~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~---------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~ 132 (400)
T 1nxk_A 62 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRK 132 (400)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc---------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCc
Confidence 45554 68999999999999974 789999999941 2467889998754 589999999999875 56
Q ss_pred ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceeccce
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGDIE 705 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~dfg 705 (833)
..|+|||||++|+|.+++.......+++.++..|+.|++.||+||| +.+|+||||||+|||++. ++.+||+|||
T Consensus 133 ~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG 209 (400)
T 1nxk_A 133 CLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFG 209 (400)
T ss_dssp EEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCT
T ss_pred EEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEecc
Confidence 7899999999999999998754456999999999999999999999 789999999999999997 7899999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH------HHHHHHhhccc
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL------AKWVLRNSAQQ 779 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~------~~~~~~~~~~~ 779 (833)
+++...... .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.... ...+.. .
T Consensus 210 ~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~---~- 282 (400)
T 1nxk_A 210 FAKETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRM---G- 282 (400)
T ss_dssp TCEECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHH---T-
T ss_pred cccccCCCC---ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHc---C-
Confidence 998764322 234678999999999999999999999999999999999999999754321 111110 0
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
........+...+.++.+++.+||+.||++|||+.|+++|
T Consensus 283 ---------~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 283 ---------QYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp ---------CCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ---------cccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000000111234578899999999999999999999986
No 119
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=4.5e-43 Score=394.90 Aligned_cols=251 Identities=19% Similarity=0.209 Sum_probs=196.6
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|.. .+|+.||||++. ............+.+|++++++++|||||+++++|...+..|+|
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILK-KEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-HHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEE-hhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 5688899999999999999996 579999999994 22222233456788999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC-CCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTS-NPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
||||++|+|.+++.. ...+++..+..++.|+++||+||| + .+|+||||||+|||++.++.+||+|||+|+....
T Consensus 227 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 301 (446)
T 4ejn_A 227 MEYANGGELFFHLSR--ERVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK 301 (446)
T ss_dssp ECCCSSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred EeeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence 999999999999976 346899999999999999999999 5 7899999999999999999999999999985432
Q ss_pred CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
.. ......+||+.|||||++.+..|+.++|||||||++|||++|+.||.+..... ........... .+.
T Consensus 302 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~i~~~~~~--------~p~ 370 (446)
T 4ejn_A 302 DG--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK-LFELILMEEIR--------FPR 370 (446)
T ss_dssp -------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC--------CCT
T ss_pred CC--cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH-HHHHHHhCCCC--------CCc
Confidence 22 12346789999999999999999999999999999999999999997544322 22111111111 111
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM 828 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~ 828 (833)
....++.+++.+||+.||++|| +++|+++|
T Consensus 371 ------~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~h 405 (446)
T 4ejn_A 371 ------TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 405 (446)
T ss_dssp ------TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred ------cCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence 1234678999999999999999 99999875
No 120
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=5.7e-43 Score=397.58 Aligned_cols=254 Identities=17% Similarity=0.204 Sum_probs=207.2
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|...++||+|+||.||+|+.. +|+.||||++. +.........+.+.+|++++++++|||||+++++|...+..|+|
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~-k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLN-KKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEE-hHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 45777789999999999999974 79999999994 33333344567899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 634 YEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
||||++|+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++...
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 99999999999997643 346999999999999999999999 7899999999999999999999999999998875
Q ss_pred CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHhhcccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 788 (833)
.... .....+||+.|||||++.+..|+.++|||||||++|||+||+.||.+... ...........
T Consensus 341 ~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~---------- 408 (543)
T 3c4z_A 341 AGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQ---------- 408 (543)
T ss_dssp TTCC--CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHC----------
T ss_pred CCCc--ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhc----------
Confidence 4332 22456899999999999999999999999999999999999999975432 12222111111
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKM-----KSVLRM 828 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~-----~evl~~ 828 (833)
....+ ...+.++.+++.+||+.||++||++ +||++|
T Consensus 409 ~~~~p----~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~H 449 (543)
T 3c4z_A 409 AVTYP----DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTH 449 (543)
T ss_dssp CCCCC----TTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTS
T ss_pred ccCCC----cccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcC
Confidence 00000 1224567899999999999999975 666653
No 121
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=6.9e-43 Score=376.64 Aligned_cols=260 Identities=19% Similarity=0.216 Sum_probs=193.0
Q ss_pred HHhcCCccccccCcccEEEEEEcCC-C---ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMPS-G---MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~~-~---~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
.+.|+..+.||+|+||.||+|.... + ..||||+++... ......+.|.+|++++++++|||||++++++...+.
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADI--IASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC--------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccc--cCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 4568888999999999999999753 3 379999994321 122235789999999999999999999999988765
Q ss_pred e------EEEEeeCCCCChhhhhhcCC----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296 630 A------YLFYEYAPKGTLFDVLHGCL----ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP 699 (833)
Q Consensus 630 ~------~lv~ey~~~g~L~~~l~~~~----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ 699 (833)
. ++||||+++|+|.+++.... ...+++.++..++.|+++||+||| +.+|+||||||+||++++++.+
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~ 176 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTV 176 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCE
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCE
Confidence 5 99999999999999996422 125899999999999999999999 7899999999999999999999
Q ss_pred eeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcc
Q 003296 700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQ 778 (833)
Q Consensus 700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~ 778 (833)
||+|||+++...............||+.|+|||++.+..++.++|||||||++|||++ |+.||.+......+..... .
T Consensus 177 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~-~ 255 (323)
T 3qup_A 177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIG-G 255 (323)
T ss_dssp EECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHT-T
T ss_pred EEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhc-C
Confidence 9999999987654332222334567889999999998889999999999999999999 9999975443322211111 0
Q ss_pred cccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
... .. ....+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus 256 -~~~------~~------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 296 (323)
T 3qup_A 256 -NRL------KQ------PPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENI 296 (323)
T ss_dssp -CCC------CC------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred -CCC------CC------CCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 000 00 012234688999999999999999999999999875
No 122
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=372.51 Aligned_cols=270 Identities=19% Similarity=0.159 Sum_probs=205.1
Q ss_pred HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchh-hhccChhHHHHHHHHHhcCC---CCCcccceEEEec
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKI-FQLGSHHKFDKELEVLGKLS---NSNVMTPLAYVLA 626 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~~~E~~~l~~l~---H~niv~~~~~~~~ 626 (833)
...+.|+..+.||+|+||+||+|+. .+|+.||||++...... ........+.+|++++++++ |||||+++++|..
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~ 85 (308)
T 3g33_A 6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT 85 (308)
T ss_dssp ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence 4467899999999999999999997 57999999998522211 11223457888998888775 9999999999987
Q ss_pred CC-----ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCcee
Q 003296 627 SD-----SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQI 701 (833)
Q Consensus 627 ~~-----~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki 701 (833)
.. ..++||||++ |+|.+++.......+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 86 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 86 SRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEE
T ss_pred cCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEE
Confidence 65 4899999997 59999998755556999999999999999999999 778999999999999999999999
Q ss_pred ccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296 702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK 781 (833)
Q Consensus 702 ~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 781 (833)
+|||+++...... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.................
T Consensus 162 ~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~ 238 (308)
T 3g33_A 162 ADFGLARIYSYQM---ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLP 238 (308)
T ss_dssp CSCSCTTTSTTCC---CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred eeCccccccCCCc---ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence 9999998654332 2345789999999999998899999999999999999999999998655433322111110000
Q ss_pred ccccc-------ccccc----CC-chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 782 LDHIL-------DFNVS----RT-SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 782 ~~~~~-------~~~~~----~~-~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..... ..... .. .........++.+++.+||+.||++|||+.|+++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 297 (308)
T 3g33_A 239 PEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH 297 (308)
T ss_dssp CTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence 00000 00000 00 00011234578899999999999999999999875
No 123
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=2.8e-42 Score=363.65 Aligned_cols=249 Identities=22% Similarity=0.311 Sum_probs=202.9
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|... ++..||||++. ..........+.+.+|++++++++||||++++++|.+.+..++|
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLF-KAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEe-ccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 56888899999999999999874 67899999984 32323334567899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 88 ~e~~~~~~l~~~l~~--~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~ 162 (279)
T 3fdn_A 88 LEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 162 (279)
T ss_dssp ECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred EecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence 999999999999976 346899999999999999999999 789999999999999999999999999998654322
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
. .....||+.|+|||++.+..++.++|||||||++|||++|+.||........+... ..... ..+.
T Consensus 163 ~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~-~~~~~--------~~~~- 228 (279)
T 3fdn_A 163 R----RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRI-SRVEF--------TFPD- 228 (279)
T ss_dssp ---------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH-HHTCC--------CCCT-
T ss_pred c----ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHH-HhCCC--------CCCC-
Confidence 2 23467999999999999888999999999999999999999999754432222111 11100 0110
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....++.+++.+||+.||++|||++|+++|
T Consensus 229 -----~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 229 -----FVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp -----TSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred -----cCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 123467799999999999999999999976
No 124
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1.4e-42 Score=391.05 Aligned_cols=261 Identities=18% Similarity=0.161 Sum_probs=199.5
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----- 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----- 628 (833)
+.|+..+.||+|+||.||+|.. .+|+.||||++... .......+.+.+|+++|++++|||||++++++...+
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRP--FQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESG--GGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECcc--ccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 4678889999999999999986 47999999999532 112233567899999999999999999999997653
Q ss_pred -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
..|+|||||++ ++.+.+.. .+++.++..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+|
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a 211 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA 211 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred CeEEEEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEee
Confidence 56999999976 57777653 3899999999999999999999 778999999999999999999999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc---
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH--- 784 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~--- 784 (833)
+...... .....+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+......+.......+....+
T Consensus 212 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~ 288 (464)
T 3ttj_A 212 RTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMK 288 (464)
T ss_dssp -----CC---CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred eecCCCc---ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence 8765332 2355789999999999999999999999999999999999999998766555443322111110000
Q ss_pred -----------------------ccccc-ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 785 -----------------------ILDFN-VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 785 -----------------------~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..... .............++.+++.+||+.||++|||++|+++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 356 (464)
T 3ttj_A 289 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH 356 (464)
T ss_dssp TSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 00000 001111122336678999999999999999999999875
No 125
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=366.38 Aligned_cols=252 Identities=19% Similarity=0.300 Sum_probs=185.2
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|+. .+|+.||||++. ..........+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMID-KKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceeeeeecCCCceEEEEEEEccCCceEEEEEee-hhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 4678889999999999999997 589999999994 22222334457899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++... ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+|++|||++......
T Consensus 90 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~ 165 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP 165 (278)
T ss_dssp EECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred EecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCC
Confidence 9999999999999853 346899999999999999999999 789999999999999999999999999999876432
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||......... ..+.......+
T Consensus 166 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~-----------~~~~~~~~~~~ 232 (278)
T 3cok_A 166 HE--KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTL-----------NKVVLADYEMP 232 (278)
T ss_dssp ----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------------CCSSCCCCC
T ss_pred CC--cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHH-----------HHHhhcccCCc
Confidence 21 123467999999999999888999999999999999999999999754321111 11111111100
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
...+.++.+++.+||+.||++|||++|++++
T Consensus 233 ----~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 263 (278)
T 3cok_A 233 ----SFLSIEAKDLIHQLLRRNPADRLSLSSVLDH 263 (278)
T ss_dssp ----TTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred ----cccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence 1123467899999999999999999999874
No 126
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=1.4e-42 Score=376.00 Aligned_cols=258 Identities=18% Similarity=0.240 Sum_probs=206.9
Q ss_pred HhcCCccccccCcccEEEEEEc--------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296 555 AVANPLNVELKTRFSTYYKAVM--------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL 625 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~ 625 (833)
+.|...+.||+|+||.||+|.. .++..||||++.... .....+.+.+|+++++++ +|||||+++++|.
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 111 (334)
T 2pvf_A 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 111 (334)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC---cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc
Confidence 5677889999999999999986 357789999995321 122346799999999999 8999999999999
Q ss_pred cCCceEEEEeeCCCCChhhhhhcCCC--------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296 626 ASDSAYLFYEYAPKGTLFDVLHGCLE--------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI 691 (833)
Q Consensus 626 ~~~~~~lv~ey~~~g~L~~~l~~~~~--------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni 691 (833)
.++..++||||+++|+|.+++..... ..++|.+++.++.|+++||+||| +.+|+||||||+||
T Consensus 112 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NI 188 (334)
T 2pvf_A 112 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNV 188 (334)
T ss_dssp SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGE
T ss_pred cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceE
Confidence 99999999999999999999986431 24899999999999999999999 78999999999999
Q ss_pred eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296 692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK 770 (833)
Q Consensus 692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~ 770 (833)
+++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+... .+
T Consensus 189 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~ 267 (334)
T 2pvf_A 189 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV-EE 267 (334)
T ss_dssp EECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH-HH
T ss_pred EEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH-HH
Confidence 999999999999999987654332222234567899999999988889999999999999999999 9999975432 22
Q ss_pred HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
........ ... ... ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 268 ~~~~~~~~-~~~------~~~------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l 316 (334)
T 2pvf_A 268 LFKLLKEG-HRM------DKP------ANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 316 (334)
T ss_dssp HHHHHHHT-CCC------CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHhcC-CCC------CCC------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 22111111 100 000 11234678999999999999999999999999875
No 127
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1.9e-42 Score=364.56 Aligned_cols=252 Identities=16% Similarity=0.178 Sum_probs=206.2
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
..+.|...+.||+|+||.||+|... ++..||+|++... .....+.|.+|++++++++|||||+++++|...+..+
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 82 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKY----FVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIY 82 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG----GCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhh----ccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEE
Confidence 4567899999999999999999974 6789999999422 1234678999999999999999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceeccceeee
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIELCK 708 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl~~ 708 (833)
+||||+++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+||++ +.++.+|++|||+++
T Consensus 83 lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~ 157 (277)
T 3f3z_A 83 LVMELCTGGELFERVVH--KRVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA 157 (277)
T ss_dssp EEEECCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEeccCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccce
Confidence 99999999999999876 346899999999999999999999 7889999999999999 788999999999998
Q ss_pred eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
...... ......||+.|+|||++.+ .++.++|||||||++|||++|+.||............ ...
T Consensus 158 ~~~~~~---~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~-~~~---------- 222 (277)
T 3f3z_A 158 RFKPGK---MMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKI-REG---------- 222 (277)
T ss_dssp ECCTTS---CBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH-HHC----------
T ss_pred eccCcc---chhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHH-HhC----------
Confidence 765433 2245679999999998765 4899999999999999999999999764432221111 111
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....+.......+.++.+++.+||+.||++|||+.|++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h 262 (277)
T 3f3z_A 223 TFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEH 262 (277)
T ss_dssp CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred CCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0001111111234578899999999999999999999864
No 128
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=3.7e-43 Score=380.37 Aligned_cols=252 Identities=18% Similarity=0.224 Sum_probs=202.5
Q ss_pred HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCc
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDS 629 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~ 629 (833)
...+.|+..+.||+|+||.||+|... +|+.||||++... ...+.+|++++.++ +|||||++++++.+++.
T Consensus 19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~--------~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~ 90 (342)
T 2qr7_A 19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS--------KRDPTEEIEILLRYGQHPNIITLKDVYDDGKY 90 (342)
T ss_dssp CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT--------TCCCHHHHHHHHHHTTSTTBCCEEEEEECSSE
T ss_pred CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcc--------cCChHHHHHHHHHhcCCCCcCeEEEEEEcCCE
Confidence 34578999999999999999999974 7999999999422 12356799999988 79999999999999999
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC----CCceeccce
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL----KEPQIGDIE 705 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~----~~~ki~dfg 705 (833)
.|+|||||++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||+.++ +.+||+|||
T Consensus 91 ~~lv~E~~~gg~L~~~i~~--~~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg 165 (342)
T 2qr7_A 91 VYVVTELMKGGELLDKILR--QKFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFG 165 (342)
T ss_dssp EEEEECCCCSCBHHHHHHT--CTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCT
T ss_pred EEEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECC
Confidence 9999999999999999976 356899999999999999999999 7899999999999998433 348999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc--cHHHHHHHhhccccccc
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN--ELAKWVLRNSAQQDKLD 783 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~--~~~~~~~~~~~~~~~~~ 783 (833)
+++....... .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.. ...+...........
T Consensus 166 ~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~-- 241 (342)
T 2qr7_A 166 FAKQLRAENG--LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFS-- 241 (342)
T ss_dssp TCEECBCTTC--CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCC--
T ss_pred CcccCcCCCC--ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcc--
Confidence 9987654332 2345789999999999988889999999999999999999999997532 222222221111000
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 784 HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.....+...+.++.+++.+||+.||++|||+.|+++|
T Consensus 242 --------~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 242 --------LSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp --------CCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred --------cCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000111234578899999999999999999999875
No 129
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.1e-42 Score=363.83 Aligned_cols=249 Identities=17% Similarity=0.210 Sum_probs=181.7
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|+. .+|+.||||++... ........+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKK-VLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSC-C-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhh-hcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEE
Confidence 3588889999999999999996 57999999999532 222334467899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+ +|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+||++++++.+|++|||+++.....
T Consensus 92 ~e~~-~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 165 (275)
T 2eue_A 92 IEYA-GNELFDYIVQ--RDKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp EECC-CEEHHHHHHT--SSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCSSCC------
T ss_pred ehhc-CCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCEEEeecccceeccCc
Confidence 9999 6789888876 346999999999999999999999 778999999999999999999999999999876433
Q ss_pred CCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
.. ....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+...... .......... ..
T Consensus 166 ~~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~--------~~- 232 (275)
T 2eue_A 166 NF---LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVL-FKNISNGVYT--------LP- 232 (275)
T ss_dssp ------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHTCCC--------CC-
T ss_pred cc---ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCCC--------CC-
Confidence 21 234679999999999987765 7899999999999999999999975443221 1111111000 00
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
...+.++.+++.+||+.||++|||++|++++
T Consensus 233 -----~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 233 -----KFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp -----TTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred -----ccCCHHHHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 0123467899999999999999999999864
No 130
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1e-42 Score=367.45 Aligned_cols=255 Identities=19% Similarity=0.258 Sum_probs=193.7
Q ss_pred HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
+.|+..+.||+|+||.||+|... .+..||||++.... .....+.|.+|+.++++++|||||++++++. ++..
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~ 90 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 90 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCcc
Confidence 46778899999999999999864 35679999984221 1223567999999999999999999999984 5678
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
++||||+++|+|.+++... ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 166 (281)
T 1mp8_A 91 WIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM 166 (281)
T ss_dssp EEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-------
T ss_pred EEEEecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECcccccccc
Confidence 9999999999999999863 346899999999999999999999 789999999999999999999999999999876
Q ss_pred CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN 789 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (833)
...... ......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+........ ... ..... .
T Consensus 167 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~-~i~-~~~~~------~ 237 (281)
T 1mp8_A 167 EDSTYY-KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIG-RIE-NGERL------P 237 (281)
T ss_dssp -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH-HHH-TTCCC------C
T ss_pred Cccccc-ccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHH-HHH-cCCCC------C
Confidence 433221 2234567889999999988889999999999999999997 999997544322111 111 10000 0
Q ss_pred ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 238 ~~------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 274 (281)
T 1mp8_A 238 MP------PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 274 (281)
T ss_dssp CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CC------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 00 12235678999999999999999999999999875
No 131
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=6.4e-43 Score=377.95 Aligned_cols=257 Identities=11% Similarity=0.101 Sum_probs=206.0
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l 632 (833)
.+|+..+.||+|+||.||+|+. .+|+.||||++... ...+.+.+|+++++++ +||||+++++++...+..++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l 82 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMK------SRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAM 82 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETT------CSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccc------cchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEE
Confidence 4677889999999999999996 58999999998422 1235689999999999 99999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC-----ceeccceee
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE-----PQIGDIELC 707 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~-----~ki~dfgl~ 707 (833)
||||+ +|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+|||++.++. +||+|||++
T Consensus 83 v~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a 157 (330)
T 2izr_A 83 VLELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALA 157 (330)
T ss_dssp EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTC
T ss_pred EEEeC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccc
Confidence 99999 99999999864 346999999999999999999999 779999999999999998887 999999999
Q ss_pred eeeCCCCCCC-----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc--cHHHHHHHhhcccc
Q 003296 708 KVIDPSKSTG-----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN--ELAKWVLRNSAQQD 780 (833)
Q Consensus 708 ~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~--~~~~~~~~~~~~~~ 780 (833)
+......... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.. ...+........
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~-- 235 (330)
T 2izr_A 158 KEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDT-- 235 (330)
T ss_dssp EESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHH--
T ss_pred eeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhh--
Confidence 9764432211 1245789999999999999999999999999999999999999998532 222211111100
Q ss_pred cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.............+++.+++.+||+.||.+||++.+|.+.|+++
T Consensus 236 --------~~~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~ 279 (330)
T 2izr_A 236 --------KRATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDL 279 (330)
T ss_dssp --------HHHSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred --------hccCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 00000000001112788999999999999999999999998764
No 132
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=9.3e-43 Score=388.39 Aligned_cols=258 Identities=19% Similarity=0.209 Sum_probs=194.7
Q ss_pred HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchh----hhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKI----FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~----~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~ 626 (833)
...+.|...+.||+|+||.||+|.. .+|+.||||++...... ........|.+|+++|++++|||||++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 5567899999999999999999997 47899999999532211 111223468999999999999999999999854
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC---CCceecc
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL---KEPQIGD 703 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~---~~~ki~d 703 (833)
+..|+|||||++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||++.+ +.+||+|
T Consensus 212 -~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~D 285 (419)
T 3i6u_A 212 -EDYYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITD 285 (419)
T ss_dssp -SEEEEEEECCTTCBGGGGTSS--SCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECC
T ss_pred -CceEEEEEcCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEee
Confidence 558999999999999999875 456999999999999999999999 7789999999999999754 4599999
Q ss_pred ceeeeeeCCCCCCCccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc
Q 003296 704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD 780 (833)
Q Consensus 704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 780 (833)
||+++...... .....+||+.|+|||++.+ ..|+.++|||||||++|||+||+.||.+..............
T Consensus 286 FG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~-- 360 (419)
T 3i6u_A 286 FGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG-- 360 (419)
T ss_dssp SSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTT--
T ss_pred cccceecCCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcC--
Confidence 99998764322 2345789999999999853 568899999999999999999999997533211111110000
Q ss_pred cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
............+.++.+++.+||+.||++|||++|+++|
T Consensus 361 --------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 400 (419)
T 3i6u_A 361 --------KYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH 400 (419)
T ss_dssp --------CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred --------CCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence 0001111112335678899999999999999999999975
No 133
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=8.6e-43 Score=379.62 Aligned_cols=263 Identities=16% Similarity=0.122 Sum_probs=203.3
Q ss_pred HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchh-hhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKI-FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
...+.|+..+.||+|+||.||+|.. .++..||||++...... ......+.+.+|++++++++|||||+++++|.+++.
T Consensus 23 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~ 102 (345)
T 3hko_A 23 ELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQY 102 (345)
T ss_dssp HHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCe
Confidence 6678899999999999999999997 57899999998422111 122345789999999999999999999999999999
Q ss_pred eEEEEeeCCCCChhhhhhcCC--------------------------------------CCCCCHHHHHHHHHHHHHHHH
Q 003296 630 AYLFYEYAPKGTLFDVLHGCL--------------------------------------ENALDWASRYSIAVGVAQGLA 671 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~--------------------------------------~~~l~~~~~~~i~~~i~~~l~ 671 (833)
.++|||||++|+|.+++.... ...+++..+..++.|+++||+
T Consensus 103 ~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~ 182 (345)
T 3hko_A 103 ICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALH 182 (345)
T ss_dssp EEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence 999999999999999985210 112356778899999999999
Q ss_pred hhhcCCCCCeeecCCCccceeeCCCC--CceeccceeeeeeCCCCCC--CccccccccccccccccccC--CcccccCcc
Q 003296 672 FLHGFTSNPILLLDLSTRNIFLKSLK--EPQIGDIELCKVIDPSKST--GSLSTVAGSVGYIPPEYAYT--MRVTMAGNV 745 (833)
Q Consensus 672 ylH~~~~~~iiHrdlk~~Nill~~~~--~~ki~dfgl~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv 745 (833)
||| +.+|+||||||+||+++.++ .+||+|||+++........ .......||+.|+|||++.+ ..++.++||
T Consensus 183 ~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Di 259 (345)
T 3hko_A 183 YLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDA 259 (345)
T ss_dssp HHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHH
T ss_pred HHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHH
Confidence 999 77899999999999998776 8999999999876432211 12245679999999999865 678999999
Q ss_pred hhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHH
Q 003296 746 YSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSV 825 (833)
Q Consensus 746 ~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~ev 825 (833)
|||||++|||++|+.||.+........ ........ .........+.++.+++.+||+.||++|||+.|+
T Consensus 260 wslG~il~el~~g~~pf~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~ 328 (345)
T 3hko_A 260 WSAGVLLHLLLMGAVPFPGVNDADTIS-QVLNKKLC----------FENPNYNVLSPLARDLLSNLLNRNVDERFDAMRA 328 (345)
T ss_dssp HHHHHHHHHHHHSSCSSCCSSHHHHHH-HHHHCCCC----------TTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCChHHHHH-HHHhcccc----------cCCcccccCCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 999999999999999997654432221 11111110 0111111234578899999999999999999999
Q ss_pred HHH
Q 003296 826 LRM 828 (833)
Q Consensus 826 l~~ 828 (833)
+++
T Consensus 329 l~h 331 (345)
T 3hko_A 329 LQH 331 (345)
T ss_dssp HHS
T ss_pred hcC
Confidence 985
No 134
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=375.18 Aligned_cols=248 Identities=15% Similarity=0.176 Sum_probs=205.9
Q ss_pred HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh----hccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF----QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~----~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~ 626 (833)
...+.|+..+.||+|+||.||+|+. .+|+.||||++....... .....+.+.+|++++++++|||||+++++|..
T Consensus 21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~ 100 (335)
T 3dls_A 21 EYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN 100 (335)
T ss_dssp HHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred ccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence 5567899999999999999999996 579999999995322111 11234578899999999999999999999999
Q ss_pred CCceEEEEeeCCCC-ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296 627 SDSAYLFYEYAPKG-TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE 705 (833)
Q Consensus 627 ~~~~~lv~ey~~~g-~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg 705 (833)
.+..++||||+.+| +|.+++.. ...+++..+..++.|++.||+||| ..+|+||||||+||+++.++.+||+|||
T Consensus 101 ~~~~~lv~e~~~~g~~l~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg 175 (335)
T 3dls_A 101 QGFFQLVMEKHGSGLDLFAFIDR--HPRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFG 175 (335)
T ss_dssp SSEEEEEEECCTTSCBHHHHHHT--CCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred CCEEEEEEEeCCCCccHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecc
Confidence 99999999999877 99999986 446999999999999999999999 7899999999999999999999999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH 784 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 784 (833)
+++...... .....+||+.|+|||++.+..+ +.++|||||||++|||++|+.||...... ...
T Consensus 176 ~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-------------~~~ 239 (335)
T 3dls_A 176 SAAYLERGK---LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET-------------VEA 239 (335)
T ss_dssp TCEECCTTC---CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG-------------TTT
T ss_pred cceECCCCC---ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH-------------Hhh
Confidence 998775433 2245789999999999988776 78999999999999999999999642110 011
Q ss_pred cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.. ..+. ..+.++.+++.+||+.||++|||++|++++
T Consensus 240 ~~----~~~~----~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 240 AI----HPPY----LVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp CC----CCSS----CCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred cc----CCCc----ccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 11 1000 123467899999999999999999999986
No 135
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=8e-43 Score=378.90 Aligned_cols=250 Identities=22% Similarity=0.301 Sum_probs=202.2
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
...|+..+.||+|+||.||+|+. .+|+.||||++..... ......++|.+|++++++++|||||+++++|..++..++
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 131 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWL 131 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSS-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccc-cchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEE
Confidence 45688889999999999999996 5899999999953221 112234679999999999999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
||||++ |+|.+++... ...+++.++..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++....
T Consensus 132 v~e~~~-g~l~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~ 206 (348)
T 1u5q_A 132 VMEYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP 206 (348)
T ss_dssp EEECCS-EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred EEecCC-CCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCC
Confidence 999997 6888888643 346899999999999999999999 77899999999999999999999999999986542
Q ss_pred CCCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN 789 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (833)
. ...+||+.|+|||++. ...++.++|||||||++|||++|+.||.+.......... ... .. ..
T Consensus 207 ~------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~-~~~-~~-~~----- 272 (348)
T 1u5q_A 207 A------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHI-AQN-ES-PA----- 272 (348)
T ss_dssp B------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-HHS-CC-CC-----
T ss_pred C------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHH-Hhc-CC-CC-----
Confidence 2 3467999999999874 567899999999999999999999999765443322211 111 10 00
Q ss_pred ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
... ...+..+.+++.+||+.||++|||++|++++
T Consensus 273 ~~~-----~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 273 LQS-----GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp CCC-----TTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred CCC-----CCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 000 0123467789999999999999999999875
No 136
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.8e-43 Score=372.95 Aligned_cols=249 Identities=18% Similarity=0.183 Sum_probs=197.2
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCce
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~ 630 (833)
..+.|+..+.||+|+||+||+|... +|+.||||++..... .......+.+|+..+.++ +|||||+++++|.+.+..
T Consensus 55 ~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~ 132 (311)
T 3p1a_A 55 FQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFR--GPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGIL 132 (311)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCC--SHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred hhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEeccccc--ChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEE
Confidence 4568999999999999999999975 899999999843211 112234566677766666 899999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
|+||||+ +|+|.+++... ...++|.+++.++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++..
T Consensus 133 ~lv~e~~-~~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~ 207 (311)
T 3p1a_A 133 YLQTELC-GPSLQQHCEAW-GASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVEL 207 (311)
T ss_dssp EEEEECC-CCBHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEEC
T ss_pred EEEEecc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeec
Confidence 9999999 67999988764 346999999999999999999999 778999999999999999999999999999876
Q ss_pred CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV 790 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (833)
.... ......||++|+|||++.+ .++.++|||||||++|||++|..|+......... .. .. ..
T Consensus 208 ~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~-----~~-~~----~~--- 270 (311)
T 3p1a_A 208 GTAG---AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQL-----RQ-GY----LP--- 270 (311)
T ss_dssp C---------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHH-----TT-TC----CC---
T ss_pred ccCC---CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHH-----hc-cC----CC---
Confidence 4332 2245679999999998876 7999999999999999999998777543221111 01 00 00
Q ss_pred cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.......+.++.+++.+||+.||++|||++|++++
T Consensus 271 ---~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 305 (311)
T 3p1a_A 271 ---PEFTAGLSSELRSVLVMMLEPDPKLRATAEALLAL 305 (311)
T ss_dssp ---HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ---cccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence 01112234578899999999999999999999875
No 137
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1.8e-42 Score=382.30 Aligned_cols=252 Identities=18% Similarity=0.248 Sum_probs=197.6
Q ss_pred hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC--CCCcccceEEEecCCceEEE
Q 003296 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS--NSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~--H~niv~~~~~~~~~~~~~lv 633 (833)
.|+..+.||+|+||.||+|...+|+.||||++..... .....+.|.+|+++|++++ |||||++++++..++..|+|
T Consensus 57 ~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 134 (390)
T 2zmd_A 57 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 134 (390)
T ss_dssp EEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred ceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc--cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence 4788899999999999999988899999999853221 1223567999999999997 59999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|| +.+|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||++ ++.+||+|||+++.....
T Consensus 135 ~E-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~ 207 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 207 (390)
T ss_dssp EE-CCSEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred Ee-cCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence 99 568899999986 346899999999999999999999 78999999999999996 588999999999876543
Q ss_pred CCCCccccccccccccccccccC-----------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYT-----------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL 782 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 782 (833)
.........+||+.|||||++.+ ..++.++|||||||++|||++|+.||..................
T Consensus 208 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~-- 285 (390)
T 2zmd_A 208 TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNH-- 285 (390)
T ss_dssp ------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTS--
T ss_pred CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccc--
Confidence 32222345689999999999864 36899999999999999999999999765443322222111100
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....+.. ...++.+++.+||+.||++|||+.|++++
T Consensus 286 ----~~~~~~~------~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 286 ----EIEFPDI------PEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp ----CCCCCCC------SCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ----cCCCCcc------chHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 0011111 12467899999999999999999999875
No 138
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=3.4e-43 Score=376.69 Aligned_cols=257 Identities=19% Similarity=0.223 Sum_probs=195.9
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc----
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS---- 629 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~---- 629 (833)
+.|+..+.||+|+||.||+|+. .+|+.||||++... ........+.|.+|++++++++|||||++++++...+.
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRAD-LARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTT-TTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCcc-ccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 4677889999999999999996 58999999999532 21222234678999999999999999999999987654
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
.|+||||+++|+|.++++. ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 91 ~~lv~e~~~g~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~ 165 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHT--EGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARA 165 (311)
T ss_dssp EEEEEECCCEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC--
T ss_pred cEEEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCccc
Confidence 4999999999999999986 346899999999999999999999 77899999999999999999999999999987
Q ss_pred eCCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 710 IDPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 710 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
....... .......||+.|+|||++.+..++.++|||||||++|||+||+.||.+........ .........
T Consensus 166 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~-~~~~~~~~~------ 238 (311)
T 3ork_A 166 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAY-QHVREDPIP------ 238 (311)
T ss_dssp ----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH-HHHHCCCCC------
T ss_pred ccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHH-HHhcCCCCC------
Confidence 6433221 12234679999999999999899999999999999999999999997654332211 111111000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
........+.++.+++.+||+.||++||++.+++++
T Consensus 239 ----~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~ 274 (311)
T 3ork_A 239 ----PSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRA 274 (311)
T ss_dssp ----HHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred ----cccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHH
Confidence 000011234568899999999999999987776654
No 139
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.6e-42 Score=383.49 Aligned_cols=268 Identities=18% Similarity=0.213 Sum_probs=196.3
Q ss_pred HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCC-
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASD- 628 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~- 628 (833)
...+.|+..+.||+|+||.||+|.+ .+|+.||||++... .......+.+.+|+.++++++ |||||++++++..++
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~--~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~ 83 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDA--FQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADND 83 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC----CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTS
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEeccc--ccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCC
Confidence 4557889999999999999999996 57999999998422 111223567889999999997 999999999998654
Q ss_pred -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
..|+|||||+ |+|.++++. ..+++..+..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+|
T Consensus 84 ~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a 156 (388)
T 3oz6_A 84 RDVYLVFDYME-TDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLS 156 (388)
T ss_dssp SCEEEEEECCS-EEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred CEEEEEecccC-cCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCccc
Confidence 6899999997 699999985 36899999999999999999999 789999999999999999999999999999
Q ss_pred eeeCCCCC-------------------CCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296 708 KVIDPSKS-------------------TGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767 (833)
Q Consensus 708 ~~~~~~~~-------------------~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~ 767 (833)
+....... .......+||+.|+|||++.+ ..|+.++||||+||++|||++|++||.+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~ 236 (388)
T 3oz6_A 157 RSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSST 236 (388)
T ss_dssp EESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred ccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 87642110 112345689999999999876 6789999999999999999999999987655
Q ss_pred HHHHHHHhhcccccccccc----------------------cccccCCchhHH----------HHHHHHHHHHHhccCCC
Q 003296 768 LAKWVLRNSAQQDKLDHIL----------------------DFNVSRTSLAVR----------SQMLTVLKVAVACVSVS 815 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~----------~~~~~~~~l~~~cl~~d 815 (833)
...+.......+....+.+ ..........+. ....++.+++.+||+.|
T Consensus 237 ~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~d 316 (388)
T 3oz6_A 237 MNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFN 316 (388)
T ss_dssp HHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccC
Confidence 4433222111000000000 000000000000 12457889999999999
Q ss_pred CCCCCCHHHHHHH
Q 003296 816 PEARPKMKSVLRM 828 (833)
Q Consensus 816 P~~Rps~~evl~~ 828 (833)
|++|||++|+++|
T Consensus 317 P~~R~t~~e~l~H 329 (388)
T 3oz6_A 317 PNKRISANDALKH 329 (388)
T ss_dssp GGGSCCHHHHTTS
T ss_pred cccCCCHHHHhCC
Confidence 9999999999876
No 140
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=9e-43 Score=381.99 Aligned_cols=269 Identities=13% Similarity=0.126 Sum_probs=205.5
Q ss_pred HHhcCCccccccCcccEEEEEEcCC------CceEEEEEccccchh-------hhccChhHHHHHHHHHhcCCCCCcccc
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMPS------GMSYFIKKLNWSDKI-------FQLGSHHKFDKELEVLGKLSNSNVMTP 620 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~~------~~~vavK~~~~~~~~-------~~~~~~~~~~~E~~~l~~l~H~niv~~ 620 (833)
.+.|...+.||+|+||.||+|.+.. ++.||||++...... ........+.+|+..+++++|||||++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4568888999999999999998754 578999998533211 011123456677888889999999999
Q ss_pred eEEEecC----CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC--
Q 003296 621 LAYVLAS----DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-- 694 (833)
Q Consensus 621 ~~~~~~~----~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-- 694 (833)
++++... ...|+||||| +|+|.+++... ...++|.++..|+.|++.||+||| +.+|+||||||+|||++
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~ 188 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYK 188 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESS
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecC
Confidence 9999875 4589999999 99999999863 356999999999999999999999 77999999999999999
Q ss_pred CCCCceeccceeeeeeCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHH
Q 003296 695 SLKEPQIGDIELCKVIDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA 769 (833)
Q Consensus 695 ~~~~~ki~dfgl~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~ 769 (833)
.++.+||+|||+++........ ......+||+.|||||++.+..++.++|||||||++|||+||+.||.+.....
T Consensus 189 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~ 268 (364)
T 3op5_A 189 NPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDP 268 (364)
T ss_dssp CTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH
T ss_pred CCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCH
Confidence 8899999999999876432211 11134569999999999999899999999999999999999999998533222
Q ss_pred HHHHHhhc-ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 770 KWVLRNSA-QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 770 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.+...... ....+..+++..+.. ...+.++.+++.+||+.||++||++++|++.|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~ 327 (364)
T 3op5_A 269 KYVRDSKIRYRENIASLMDKCFPA-----ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG 327 (364)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHSCT-----TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHhccc-----ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 22211111 111122222222110 11245788999999999999999999999998764
No 141
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=376.42 Aligned_cols=253 Identities=18% Similarity=0.243 Sum_probs=196.3
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC--CCcccceEEEecCCceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN--SNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H--~niv~~~~~~~~~~~~~l 632 (833)
+.|+..+.||+|+||.||+|...+++.||||++..... .....+.|.+|++++++++| ||||++++++..++..|+
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 86 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 86 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc--chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence 35778899999999999999998999999999853211 12234679999999999987 999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
||| +.+|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+|||++ ++.+||+|||+++....
T Consensus 87 v~e-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~ 159 (343)
T 3dbq_A 87 VME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 159 (343)
T ss_dssp EEC-CCSEEHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC--
T ss_pred EEe-CCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCc
Confidence 999 568899999987 456899999999999999999999 77899999999999997 57899999999987654
Q ss_pred CCCCCccccccccccccccccccC-----------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYT-----------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK 781 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 781 (833)
..........+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.................
T Consensus 160 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~ 239 (343)
T 3dbq_A 160 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHE 239 (343)
T ss_dssp ----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSC
T ss_pred ccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcc
Confidence 332222345689999999999864 668999999999999999999999997644432222221111000
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
...+. ....++.+++.+||+.||++|||+.|+++|
T Consensus 240 ------~~~~~------~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 240 ------IEFPD------IPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp ------CCCCC------CSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ------cCCcc------cCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 01111 112367799999999999999999999876
No 142
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1e-42 Score=392.02 Aligned_cols=254 Identities=21% Similarity=0.274 Sum_probs=202.0
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
+.|...+.||+|+||.||+|...++..||||+++... ...++|.+|+++|++++|||||++++++.. +..++||
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~ 257 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT 257 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-----CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEe
Confidence 4577788999999999999999888889999995221 235789999999999999999999999876 7789999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
|||++|+|.++++......+++.++..++.|+++||+||| +.+|+||||||+|||+++++.+||+|||+++......
T Consensus 258 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~ 334 (452)
T 1fmk_A 258 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334 (452)
T ss_dssp CCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC------
T ss_pred hhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc
Confidence 9999999999997533346899999999999999999999 7889999999999999999999999999998764332
Q ss_pred CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... +..... ...... ..+
T Consensus 335 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~-~~~~~i-~~~~~~------~~~-- 403 (452)
T 1fmk_A 335 YT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-EVLDQV-ERGYRM------PCP-- 403 (452)
T ss_dssp ---------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-HHHHHH-HTTCCC------CCC--
T ss_pred ee-cccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH-HHHHHH-HcCCCC------CCC--
Confidence 11 1234567889999999988899999999999999999999 99999754332 111111 111110 000
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+.++.+++.+||+.||++|||++|+++.|+++
T Consensus 404 ----~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~ 438 (452)
T 1fmk_A 404 ----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 438 (452)
T ss_dssp ----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred ----CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 12345678999999999999999999999999875
No 143
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.9e-42 Score=379.12 Aligned_cols=261 Identities=15% Similarity=0.184 Sum_probs=204.7
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-----CCCcccceEEEecC
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-----NSNVMTPLAYVLAS 627 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----H~niv~~~~~~~~~ 627 (833)
.+.|...+.||+|+||.||+|+. .+|+.||||++.... ...+.+.+|++++++++ |||||++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~ 108 (360)
T 3llt_A 34 NNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-----KYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYY 108 (360)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-----HHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEET
T ss_pred cCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-----hhhhhhHHHHHHHHHhcccCCCCCCeecccceeeEC
Confidence 46788899999999999999997 578999999994221 12456788999999997 99999999999999
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC------------
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS------------ 695 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~------------ 695 (833)
+..++||||+ +|+|.+++.......+++.++..++.|++.||+||| +.+|+||||||+|||++.
T Consensus 109 ~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~~~~~~ 184 (360)
T 3llt_A 109 DHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSLITVRR 184 (360)
T ss_dssp TEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEEEEEEC
T ss_pred CeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEccccccccccchhc
Confidence 9999999999 899999998765557999999999999999999999 789999999999999975
Q ss_pred -------------CCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcc
Q 003296 696 -------------LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAV 762 (833)
Q Consensus 696 -------------~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~ 762 (833)
++.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 185 ~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf 259 (360)
T 3llt_A 185 VTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLF 259 (360)
T ss_dssp TTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred ccccccccccccCCCCEEEEeccCceecCCCC-----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCC
Confidence 7889999999998754322 3568999999999999999999999999999999999999999
Q ss_pred cCCccHHHHHHHhhccccccc------------ccccc-----cccCCch--------------hHHHHHHHHHHHHHhc
Q 003296 763 NQGNELAKWVLRNSAQQDKLD------------HILDF-----NVSRTSL--------------AVRSQMLTVLKVAVAC 811 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~-----~~~~~~~--------------~~~~~~~~~~~l~~~c 811 (833)
..................... ..++. ..+.... ........+.+++.+|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~ 339 (360)
T 3llt_A 260 RTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSI 339 (360)
T ss_dssp CCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHH
Confidence 765433222111110000000 00000 0000000 0001125677999999
Q ss_pred cCCCCCCCCCHHHHHHH
Q 003296 812 VSVSPEARPKMKSVLRM 828 (833)
Q Consensus 812 l~~dP~~Rps~~evl~~ 828 (833)
|+.||++|||++|+++|
T Consensus 340 L~~dP~~Rpta~elL~h 356 (360)
T 3llt_A 340 LQIDPTLRPSPAELLKH 356 (360)
T ss_dssp CCSSGGGSCCHHHHTTS
T ss_pred hcCChhhCCCHHHHhcC
Confidence 99999999999999875
No 144
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1.5e-42 Score=367.57 Aligned_cols=260 Identities=21% Similarity=0.328 Sum_probs=194.6
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
..|...+.||+|+||.||+|+.. ..||||+++.... .....+.|.+|++++++++|||||++++++ ..+..++||
T Consensus 24 ~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~ 98 (289)
T 3og7_A 24 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAP--TPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT 98 (289)
T ss_dssp TSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred cceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCC--CHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence 45777899999999999999864 3599999853221 122346799999999999999999999965 556789999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
||+++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 99 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 174 (289)
T 3og7_A 99 QWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS 174 (289)
T ss_dssp ECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC---------
T ss_pred EecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceecccccccc
Confidence 999999999999753 346999999999999999999999 7889999999999999999999999999998664332
Q ss_pred CCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 715 STGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
.........||+.|+|||++. +..++.++|||||||++|||++|+.||................ . . .+...
T Consensus 175 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-~-~----~~~~~ 248 (289)
T 3og7_A 175 GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRG-S-L----SPDLS 248 (289)
T ss_dssp ---------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHT-S-C----CCCTT
T ss_pred ccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhccc-c-c----Ccchh
Confidence 222334567999999999886 5668899999999999999999999998655543332222111 1 0 00111
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. ....+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 249 ~~---~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l 286 (289)
T 3og7_A 249 KV---RSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 286 (289)
T ss_dssp SS---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred hc---cccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence 00 012345788999999999999999999999999986
No 145
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=2.1e-42 Score=377.79 Aligned_cols=249 Identities=16% Similarity=0.154 Sum_probs=192.3
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|+..+.||+|+||.||+|+.. +|+.||||++.... ...+.+.+|+.++++++|||||++++++..++..++|
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 94 (361)
T 3uc3_A 20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-----AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAII 94 (361)
T ss_dssp TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-----TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-----cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEE
Confidence 45788899999999999999975 89999999994221 2346789999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC--ceeccceeeeeeC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE--PQIGDIELCKVID 711 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~--~ki~dfgl~~~~~ 711 (833)
||||++|+|.+++.. ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++. +||+|||+++...
T Consensus 95 ~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~ 169 (361)
T 3uc3_A 95 MEYASGGELYERICN--AGRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSV 169 (361)
T ss_dssp EECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC----
T ss_pred EEeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCcccccc
Confidence 999999999999975 346999999999999999999999 788999999999999987765 9999999998543
Q ss_pred CCCCCCccccccccccccccccccCCccccc-CcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHhhccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMA-GNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~ 787 (833)
... .....+||+.|+|||++.+..++.+ +||||+||++|||++|+.||.+... ..............
T Consensus 170 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~------ 240 (361)
T 3uc3_A 170 LHS---QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYS------ 240 (361)
T ss_dssp --------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCC------
T ss_pred ccC---CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCC------
Confidence 222 2245679999999999988777655 8999999999999999999975332 12222111111000
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.+. ....+.++.+++.+||+.||++|||+.|+++|
T Consensus 241 --~~~----~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 241 --IPD----DIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp --CCT----TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred --CCC----cCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 000 00123467899999999999999999999876
No 146
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.7e-42 Score=370.91 Aligned_cols=260 Identities=15% Similarity=0.109 Sum_probs=198.9
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
-+.|+..+.||+|+||.||+|... +|+.||||++... ........+.|.+|++++++++||||+++++++..++..|+
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSET-LSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGG-GGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcc-cccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 356888899999999999999974 7899999999422 22222234679999999999999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
||||+++|+|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 112 v~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 186 (309)
T 2h34_A 112 DMRLINGVDLAAMLRR--QGPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTD 186 (309)
T ss_dssp EEECCCCEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC------
T ss_pred EEEecCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCccccc
Confidence 9999999999999986 346899999999999999999999 77899999999999999999999999999987643
Q ss_pred CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ................
T Consensus 187 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~------ 257 (309)
T 2h34_A 187 EKLT-QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQAIPRPSTV------ 257 (309)
T ss_dssp -----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSCCCCGGGT------
T ss_pred cccc-cccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccCCCCcccc------
Confidence 3211 223567999999999999889999999999999999999999999754322 1111111111000000
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHHHhc
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARP-KMKSVLRMLLNA 832 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-s~~evl~~L~~~ 832 (833)
....+.++.+++.+||+.||++|| +++|+++.|+++
T Consensus 258 ----~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~ 294 (309)
T 2h34_A 258 ----RPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAA 294 (309)
T ss_dssp ----STTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHT
T ss_pred ----CCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHH
Confidence 112234678899999999999999 999999999865
No 147
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.7e-42 Score=366.27 Aligned_cols=254 Identities=19% Similarity=0.267 Sum_probs=205.3
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
.+.|+..+.||+|+||.||+|... +|+.||||++..... .....+.+.+|++++++++||||+++++++..++..++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 82 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL--SARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 82 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccC--CHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEE
Confidence 456888899999999999999974 799999999943221 12234678999999999999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---ceeccceeeee
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---PQIGDIELCKV 709 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---~ki~dfgl~~~ 709 (833)
||||+++|+|.+.+.. ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||++..
T Consensus 83 v~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~ 157 (284)
T 3kk8_A 83 VFDLVTGGELFEDIVA--REFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIE 157 (284)
T ss_dssp EECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred EEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEE
Confidence 9999999999998876 346899999999999999999999 788999999999999986655 99999999987
Q ss_pred eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN 789 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (833)
..... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.............. ...
T Consensus 158 ~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~-~~~------- 226 (284)
T 3kk8_A 158 VNDSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGA-YDY------- 226 (284)
T ss_dssp CCSSC---BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC-CCC-------
T ss_pred cccCc---cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhcc-ccC-------
Confidence 65332 2245689999999999999899999999999999999999999997654332211111111 000
Q ss_pred ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
........+.++.+++.+||+.||++|||+.|++++
T Consensus 227 ---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 227 ---PSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp ---CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred ---CchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 000011234567899999999999999999999875
No 148
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=6e-42 Score=360.50 Aligned_cols=256 Identities=18% Similarity=0.239 Sum_probs=206.9
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
..++|+..+.||+|+||.||+|... +|+.||||++.... .....+.+.+|++++++++||||+++++++..++..+
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 81 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR---AVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQY 81 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGG---CTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeecc---chhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEE
Confidence 4578999999999999999999975 79999999984221 1223568999999999999999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
+||||+++|+|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+|++|||.+....
T Consensus 82 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~ 156 (276)
T 2yex_A 82 LFLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFR 156 (276)
T ss_dssp EEEECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECE
T ss_pred EEEEecCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccC
Confidence 99999999999999975 346899999999999999999999 7899999999999999999999999999998764
Q ss_pred CCCCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV 790 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (833)
............||+.|+|||++.+..+ +.++|||||||++|||++|+.||.................... .
T Consensus 157 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~----~--- 229 (276)
T 2yex_A 157 YNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL----N--- 229 (276)
T ss_dssp ETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTS----T---
T ss_pred CCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhccccc----C---
Confidence 3322222345689999999999987665 7899999999999999999999985443221111111110000 0
Q ss_pred cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.....+..+.+++.+||+.||++|||++|++++
T Consensus 230 -----~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (276)
T 2yex_A 230 -----PWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (276)
T ss_dssp -----TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred -----chhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence 011234467899999999999999999999864
No 149
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=4.4e-42 Score=365.89 Aligned_cols=258 Identities=10% Similarity=0.071 Sum_probs=207.1
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l 632 (833)
+.|+..+.||+|+||.||+|.. .+|+.||||++... ...+.+.+|+++++++ +||||+++++++......++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l 83 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR------SDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL 83 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC------TTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccC------CccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEE
Confidence 4577889999999999999996 68999999998422 1245689999999999 79999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC-----ceeccceee
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE-----PQIGDIELC 707 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~-----~ki~dfgl~ 707 (833)
||||+ +|+|.++++.. ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||++
T Consensus 84 v~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~ 158 (298)
T 1csn_A 84 VIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV 158 (298)
T ss_dssp EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTC
T ss_pred EEEec-CCCHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccc
Confidence 99999 99999999864 345999999999999999999999 789999999999999987776 999999999
Q ss_pred eeeCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc--HHHHHHHhhcccc
Q 003296 708 KVIDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE--LAKWVLRNSAQQD 780 (833)
Q Consensus 708 ~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--~~~~~~~~~~~~~ 780 (833)
+........ .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... .............
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~ 238 (298)
T 1csn_A 159 KFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQ 238 (298)
T ss_dssp EESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhcc
Confidence 877543221 112456799999999999998999999999999999999999999985322 1111111100000
Q ss_pred cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. . .........+.++.+++.+||+.||++|||++||++.|+++
T Consensus 239 ~-~--------~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~ 281 (298)
T 1csn_A 239 S-T--------PLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV 281 (298)
T ss_dssp H-S--------CHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred C-c--------cHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHH
Confidence 0 0 00000012345788999999999999999999999999875
No 150
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=374.30 Aligned_cols=256 Identities=20% Similarity=0.286 Sum_probs=196.5
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceE----EEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSY----FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~v----avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
.+|+..+.||+|+||.||+|.. .+|+.| |+|.+... ......+.|.+|++++++++|||||+++++|..++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~- 90 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA---TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST- 90 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCC---SSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccc---cCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-
Confidence 4577889999999999999996 456554 66666321 12345678999999999999999999999998754
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
.++|+||+++|+|.+++... ...+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 91 ~~~v~~~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~ 166 (327)
T 3lzb_A 91 VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKL 166 (327)
T ss_dssp EEEEECCCSSCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC---
T ss_pred ceEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeE
Confidence 88999999999999999864 346899999999999999999999 78899999999999999999999999999987
Q ss_pred eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
..............||+.|+|||++.+..++.++|||||||++|||++ |+.||.+...... .... ......
T Consensus 167 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~-~~~~-~~~~~~------ 238 (327)
T 3lzb_A 167 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-SSIL-EKGERL------ 238 (327)
T ss_dssp -------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-HHHH-HTTCCC------
T ss_pred ccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-HHHH-HcCCCC------
Confidence 654433323344567889999999999899999999999999999999 9999975433211 1111 110000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
... ...+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus 239 ~~~------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 276 (327)
T 3lzb_A 239 PQP------PICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKM 276 (327)
T ss_dssp CCC------TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCC------ccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 000 11234678999999999999999999999999865
No 151
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.3e-42 Score=370.67 Aligned_cols=267 Identities=21% Similarity=0.267 Sum_probs=205.1
Q ss_pred HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-- 627 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-- 627 (833)
..|+..+.||+|+||.||+|+. .+|+.||||++.... .....+.+.+|++++++++||||+++++++..+
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 97 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES---GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGG 97 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC--------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc---cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC
Confidence 3477789999999999999983 478999999995222 233457899999999999999999999999876
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
...++||||+++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 98 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~ 173 (302)
T 4e5w_A 98 NGIKLIMEFLPSGSLKEYLPKN-KNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLT 173 (302)
T ss_dssp CCEEEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTC
T ss_pred ceEEEEEEeCCCCcHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECccccc
Confidence 6689999999999999999653 346999999999999999999999 789999999999999999999999999999
Q ss_pred eeeCCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc--c---
Q 003296 708 KVIDPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD--K--- 781 (833)
Q Consensus 708 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~--~--- 781 (833)
+........ .......||..|+|||++.+..++.++||||+||++|||+||+.|+...... +......... .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~ 251 (302)
T 4e5w_A 174 KAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMAL--FLKMIGPTHGQMTVTR 251 (302)
T ss_dssp EECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH--HHHHHCSCCGGGHHHH
T ss_pred ccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhH--HhhccCCcccccCHHH
Confidence 887544321 1223467899999999999889999999999999999999999987522111 0000000000 0
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
....+....... .....+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus 252 ~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 252 LVNTLKEGKRLP--CPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp HHHHHHTTCCCC--CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHhccCCCC--CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 000000000000 0112345788999999999999999999999999875
No 152
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.4e-42 Score=378.79 Aligned_cols=269 Identities=15% Similarity=0.170 Sum_probs=208.9
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC--ceE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD--SAY 631 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~--~~~ 631 (833)
..|...+.||+|+||.||+|+.. +|+.||||++... ......+.+.+|++++++++|||||++++++...+ ..+
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 85 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNI---SFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV 85 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGG---GGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccc---cccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence 35777899999999999999975 6999999999522 12334678899999999999999999999998765 689
Q ss_pred EEEeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee----CCCCCceecccee
Q 003296 632 LFYEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL----KSLKEPQIGDIEL 706 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill----~~~~~~ki~dfgl 706 (833)
+|||||++|+|.++++.... ..+++..++.++.|++.||+||| +.+|+||||||+|||+ +.++.+||+|||+
T Consensus 86 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~ 162 (396)
T 4eut_A 86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA 162 (396)
T ss_dssp EEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGG
T ss_pred EEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCC
Confidence 99999999999999986422 24999999999999999999999 7889999999999999 7778899999999
Q ss_pred eeeeCCCCCCCccccccccccccccccccC--------CcccccCcchhhHHHHHHHHhCCCcccCCc---cHHHHHHHh
Q 003296 707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYT--------MRVTMAGNVYSFGVILLELLTGKTAVNQGN---ELAKWVLRN 775 (833)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~---~~~~~~~~~ 775 (833)
++...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.... ...+.....
T Consensus 163 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~ 239 (396)
T 4eut_A 163 ARELEDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI 239 (396)
T ss_dssp CEECCCGG---GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHH
T ss_pred ceEccCCC---ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHH
Confidence 98765432 2245679999999998764 568899999999999999999999997322 112222111
Q ss_pred hcccc--ccccc---------ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 776 SAQQD--KLDHI---------LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 776 ~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
..... ..... .....+............+.+++.+||+.||++||+++|++++++++
T Consensus 240 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~i 307 (396)
T 4eut_A 240 ITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (396)
T ss_dssp HHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred hcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHH
Confidence 11100 00000 00011111122245667788999999999999999999999998764
No 153
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=5.8e-42 Score=369.75 Aligned_cols=258 Identities=20% Similarity=0.249 Sum_probs=206.0
Q ss_pred HHHHhcCCc-cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCC
Q 003296 552 AMEAVANPL-NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASD 628 (833)
Q Consensus 552 ~~~~~~~~~-~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~ 628 (833)
...+.|... +.||+|+||.||+|... +|+.||||++.... ........+.+|++++++++ ||||++++++|...+
T Consensus 25 ~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~ 102 (327)
T 3lm5_A 25 NFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRR--RGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS 102 (327)
T ss_dssp HHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEE--TTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred hhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhh--cchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC
Confidence 556677776 89999999999999975 79999999995322 22334678999999999995 699999999999999
Q ss_pred ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceeccce
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGDIE 705 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~dfg 705 (833)
..++||||+++|+|.+++.......+++.++..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||
T Consensus 103 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg 179 (327)
T 3lm5_A 103 EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFG 179 (327)
T ss_dssp EEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGG
T ss_pred eEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCc
Confidence 9999999999999999997654567999999999999999999999 789999999999999997 7899999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI 785 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 785 (833)
+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||....................
T Consensus 180 ~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~--- 253 (327)
T 3lm5_A 180 MSRKIGHAC---ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYS--- 253 (327)
T ss_dssp GCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCC---
T ss_pred cccccCCcc---ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccC---
Confidence 998765332 22456899999999999988999999999999999999999999976544332222111110000
Q ss_pred ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..........+.+++.+||+.||++|||++|++++
T Consensus 254 --------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 254 --------EETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp --------TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred --------chhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 00111234567899999999999999999999875
No 154
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.9e-42 Score=361.03 Aligned_cols=254 Identities=20% Similarity=0.248 Sum_probs=207.6
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
+.|+..+.||+|+||.||+|...++..||||++.... ...+.+.+|++++++++||||+++++++..++..++||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 82 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-----MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVT 82 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-----BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-----CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEE
Confidence 3577788999999999999999889999999995221 23468999999999999999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
||+++|+|.+++... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+|++|||+++......
T Consensus 83 e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~ 158 (267)
T 3t9t_A 83 EFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ 158 (267)
T ss_dssp CCCTTCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH
T ss_pred eCCCCCcHHHHHhhC-cccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEccccccccccccc
Confidence 999999999999864 346899999999999999999999 7889999999999999999999999999998653221
Q ss_pred CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
. .......||+.|+|||++.+..++.++|||||||++|||++ |+.||...... ......... .. . ....
T Consensus 159 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-~~~~~i~~~-~~--~----~~~~- 228 (267)
T 3t9t_A 159 Y-TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS-EVVEDISTG-FR--L----YKPR- 228 (267)
T ss_dssp H-HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHHHHTT-CC--C----CCCT-
T ss_pred c-cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH-HHHHHHhcC-Cc--C----CCCc-
Confidence 1 11133567889999999988889999999999999999999 89999754332 221111111 00 0 0000
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
..+.++.+++.+||+.||++|||++|++++|+++
T Consensus 229 -----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l 262 (267)
T 3t9t_A 229 -----LASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 262 (267)
T ss_dssp -----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----cCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1234678999999999999999999999999876
No 155
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=4.6e-42 Score=362.82 Aligned_cols=256 Identities=17% Similarity=0.215 Sum_probs=205.2
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhh--hccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIF--QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
.+.|+..+.||+|+||.||+|... +|+.||||+++...... .....+.|.+|++++++++||||+++++++..++..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 467889999999999999999975 79999999985332111 112467899999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC----Cceecccee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK----EPQIGDIEL 706 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~----~~ki~dfgl 706 (833)
++||||+++|+|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 84 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~ 158 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAE--KESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGI 158 (283)
T ss_dssp EEEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEEeecCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence 999999999999999975 346899999999999999999999 78999999999999998877 799999999
Q ss_pred eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296 707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL 786 (833)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (833)
++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+....... ..
T Consensus 159 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~~----- 229 (283)
T 3bhy_A 159 AHKIEAGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVN-YD----- 229 (283)
T ss_dssp CEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTC-CC-----
T ss_pred ceeccCCC---cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcc-cC-----
Confidence 98764332 1234679999999999998899999999999999999999999997654322221111100 00
Q ss_pred cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.........+..+.+++.+||+.||++|||+.|++++
T Consensus 230 -----~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 266 (283)
T 3bhy_A 230 -----FDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEH 266 (283)
T ss_dssp -----CCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHC
T ss_pred -----CcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhC
Confidence 0011111234568899999999999999999999975
No 156
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=1.5e-42 Score=395.34 Aligned_cols=255 Identities=21% Similarity=0.241 Sum_probs=208.5
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
..+.|+..+.||+|+||.||+|... +|+.||||++... ........+.+.+|++++++++|||||+++++|...+..|
T Consensus 24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 102 (484)
T 3nyv_A 24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKR-QVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFY 102 (484)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT-TCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhh-hcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 4567999999999999999999975 8999999999422 2222345678999999999999999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceeccceeee
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIELCK 708 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl~~ 708 (833)
+|||||++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||+ +.++.+||+|||+++
T Consensus 103 lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~ 177 (484)
T 3nyv_A 103 LVGEVYTGGELFDEIIS--RKRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLST 177 (484)
T ss_dssp EEECCCCSCBHHHHHHT--CSCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHH
T ss_pred EEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeE
Confidence 99999999999999976 356899999999999999999999 7789999999999999 467899999999998
Q ss_pred eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
...... .....+||+.|+|||++.+ .|+.++||||+||++|||++|+.||.+...... .........
T Consensus 178 ~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~-------- 244 (484)
T 3nyv_A 178 HFEASK---KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDI-LKKVEKGKY-------- 244 (484)
T ss_dssp HBCCCC---SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCC--------
T ss_pred Eccccc---ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHH-HHHHHcCCC--------
Confidence 765433 2345689999999998866 699999999999999999999999986543322 111111100
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....+.+...+.++.+++.+||+.||++|||+.|+++|
T Consensus 245 --~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 282 (484)
T 3nyv_A 245 --TFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDH 282 (484)
T ss_dssp --CCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred --CCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence 00111122345578899999999999999999999875
No 157
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.6e-43 Score=374.36 Aligned_cols=261 Identities=19% Similarity=0.227 Sum_probs=189.0
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhc--CCCCCcccceEEEecCC----
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK--LSNSNVMTPLAYVLASD---- 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~~~~~~~~~~---- 628 (833)
+.|...+.||+|+||.||+|+. +|+.||||++.. ...+.+.+|.+++.. ++|||||++++++...+
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~-------~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 74 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS-------REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT 74 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC--------TTHHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSE
T ss_pred ceeeehhhccCCCCeEEEEEEE-cCcceEEEEecc-------cchhhHHHHHHHHHHHhccCcceeeeeeecccCCCccc
Confidence 5788999999999999999987 499999999942 124678889999988 79999999999998876
Q ss_pred ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----CCCeeecCCCccceeeCCCCCceecc
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT-----SNPILLLDLSTRNIFLKSLKEPQIGD 703 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~-----~~~iiHrdlk~~Nill~~~~~~ki~d 703 (833)
..++||||+++|+|.++++. ..+++..+..++.|++.||+|||... +.+|+||||||+|||++.++.+||+|
T Consensus 75 ~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~D 151 (303)
T 3gxj_A 75 QLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 151 (303)
T ss_dssp EEEEEEECCTTCCHHHHHHH---CCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCC
T ss_pred eeEEEEeccCCCCHHHHHhc---cCcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEee
Confidence 78999999999999999975 35888899999999999999999432 56899999999999999999999999
Q ss_pred ceeeeeeCCCCCCC--ccccccccccccccccccCC------cccccCcchhhHHHHHHHHhC----------CCcccCC
Q 003296 704 IELCKVIDPSKSTG--SLSTVAGSVGYIPPEYAYTM------RVTMAGNVYSFGVILLELLTG----------KTAVNQG 765 (833)
Q Consensus 704 fgl~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg----------~~p~~~~ 765 (833)
||+++......... ......||+.|+|||++.+. .++.++|||||||++|||+|| +.||...
T Consensus 152 Fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~ 231 (303)
T 3gxj_A 152 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDL 231 (303)
T ss_dssp CCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTT
T ss_pred cCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeecccccc
Confidence 99997765433211 12335799999999998765 566899999999999999999 5565422
Q ss_pred cc----HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 766 NE----LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 766 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
.. ......... .....+..... ......+..+.+++.+||+.||++|||++||++.|+++.
T Consensus 232 ~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~ 296 (303)
T 3gxj_A 232 VPSDPSVEEMRKVVC------EQKLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS 296 (303)
T ss_dssp CC-CCCCC-CHHHHT------TSCCCCCCCGG-GGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-C
T ss_pred CCCCccHHHHHHHHH------HhhcCCCcccc-ccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhh
Confidence 11 000000000 00111111110 111245668899999999999999999999999999864
No 158
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=2e-42 Score=365.89 Aligned_cols=254 Identities=20% Similarity=0.254 Sum_probs=199.4
Q ss_pred HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
..+.|...+.||+|+||.||+|.. .+|..||||++... ......+.+.+|++++++++|||||++++++.+.+..+
T Consensus 20 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 96 (285)
T 3is5_A 20 IDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKD---RSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMY 96 (285)
T ss_dssp HHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGG---GCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred hhhheeecceeccCCCeEEEEEEEccCCceEEEEEeecc---ccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEE
Confidence 446788999999999999999997 47899999999522 12334678999999999999999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceecccee
Q 003296 632 LFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIEL 706 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl 706 (833)
+||||+++|+|.+++... ....+++..+..++.|+++||+||| +.+|+||||||+||++ +.++.+||+|||+
T Consensus 97 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~ 173 (285)
T 3is5_A 97 IVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGL 173 (285)
T ss_dssp EEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCC
T ss_pred EEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeec
Confidence 999999999999998642 1356999999999999999999999 7899999999999999 4567899999999
Q ss_pred eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296 707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL 786 (833)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (833)
++...... ......||+.|+|||++. ..++.++|||||||++|||++|+.||.+.... ..............
T Consensus 174 a~~~~~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~-~~~~~~~~~~~~~~--- 245 (285)
T 3is5_A 174 AELFKSDE---HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE-EVQQKATYKEPNYA--- 245 (285)
T ss_dssp CCC-------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCCCCC---
T ss_pred ceecCCcc---cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHH-HHHhhhccCCcccc---
Confidence 98664332 224567999999999875 56899999999999999999999999754322 21111111100000
Q ss_pred cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
... .....++.+++.+||+.||++|||+.||+++
T Consensus 246 -~~~-------~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 279 (285)
T 3is5_A 246 -VEC-------RPLTPQAVDLLKQMLTKDPERRPSAAQVLHH 279 (285)
T ss_dssp -C---------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred -ccc-------CcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000 0123467799999999999999999999874
No 159
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=4.5e-42 Score=391.22 Aligned_cols=255 Identities=22% Similarity=0.244 Sum_probs=206.2
Q ss_pred HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
...+.|+..+.||+|+||+||+|... +|+.||||++... .......+.+.+|++++++++|||||++++++...+..
T Consensus 19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~ 96 (486)
T 3mwu_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKA--SAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSF 96 (486)
T ss_dssp HHHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHH--HHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ChhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecc--cccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEE
Confidence 45578999999999999999999974 8999999999422 12234567899999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC---CCCCceeccceee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK---SLKEPQIGDIELC 707 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~---~~~~~ki~dfgl~ 707 (833)
|+|||||++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++ .++.+||+|||++
T Consensus 97 ~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a 171 (486)
T 3mwu_A 97 YIVGELYTGGELFDEIIK--RKRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLS 171 (486)
T ss_dssp EEEECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCT
T ss_pred EEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcC
Confidence 999999999999999876 346899999999999999999999 78999999999999995 4567999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (833)
+...... .....+||+.|+|||++.+ .|+.++||||+||++|||++|+.||.+...... ........
T Consensus 172 ~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~-------- 238 (486)
T 3mwu_A 172 TCFQQNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDI-LKRVETGK-------- 238 (486)
T ss_dssp TTBCCC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHTC--------
T ss_pred eECCCCC---ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCC--------
Confidence 8664332 2245689999999999875 599999999999999999999999976543221 11111110
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.....+.+...+.++.+++.+||+.||++|||+.|+++|
T Consensus 239 --~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 239 --YAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp --CCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred --CCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 000111122334578899999999999999999999986
No 160
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=374.85 Aligned_cols=263 Identities=16% Similarity=0.216 Sum_probs=196.0
Q ss_pred hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
.|...+.||+|+||.||+|+.. +|+.||||++..... ......+.+|++++++++|||||++++++..++..++||
T Consensus 3 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 79 (324)
T 3mtl_A 3 TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE---EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVF 79 (324)
T ss_dssp SEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC---------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEE
T ss_pred ceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccc---cccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEe
Confidence 5777899999999999999975 799999999953221 122335668999999999999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
||++ |+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 80 e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 154 (324)
T 3mtl_A 80 EYLD-KDLKQYLDDC-GNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT 154 (324)
T ss_dssp ECCS-EEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC----
T ss_pred cccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc
Confidence 9997 5999998864 346899999999999999999999 7899999999999999999999999999998654322
Q ss_pred CCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHH--Hhhccc--ccccccccc-
Q 003296 715 STGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVL--RNSAQQ--DKLDHILDF- 788 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~--~~~~~~--~~~~~~~~~- 788 (833)
. ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+......... ...... .........
T Consensus 155 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 232 (324)
T 3mtl_A 155 K--TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNE 232 (324)
T ss_dssp ----------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCH
T ss_pred c--ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcch
Confidence 1 2245678999999999876 5689999999999999999999999986544332211 111110 000010000
Q ss_pred --------cccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 789 --------NVSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 789 --------~~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..... .........++.+++.+||+.||++|||++|+++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 282 (324)
T 3mtl_A 233 EFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH 282 (324)
T ss_dssp HHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence 00000 00011234567899999999999999999999875
No 161
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-41 Score=367.01 Aligned_cols=264 Identities=20% Similarity=0.242 Sum_probs=200.2
Q ss_pred HHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcC--CCCCcccceEEEecC--
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL--SNSNVMTPLAYVLAS-- 627 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l--~H~niv~~~~~~~~~-- 627 (833)
...+.|+..+.||+|+||.||+|+.. |+.||||++... ....+.+|.+++... +|||||++++++...
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~ 105 (337)
T 3mdy_A 34 TIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT-------EEASWFRETEIYQTVLMRHENILGFIAADIKGTG 105 (337)
T ss_dssp THHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCG
T ss_pred ccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc-------ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCC
Confidence 45678999999999999999999874 999999998422 134566677776665 899999999999887
Q ss_pred --CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----CCCeeecCCCccceeeCCCCCce
Q 003296 628 --DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT-----SNPILLLDLSTRNIFLKSLKEPQ 700 (833)
Q Consensus 628 --~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~-----~~~iiHrdlk~~Nill~~~~~~k 700 (833)
...++||||+++|+|.++++. ..+++..+..++.|++.||+|||+.+ .++|+||||||+||+++.++.+|
T Consensus 106 ~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k 182 (337)
T 3mdy_A 106 SWTQLYLITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCC 182 (337)
T ss_dssp GGCEEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEE
T ss_pred CCCceEEEEeccCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEE
Confidence 679999999999999999975 35999999999999999999999321 12899999999999999999999
Q ss_pred eccceeeeeeCCCCCCC--ccccccccccccccccccCCccccc------CcchhhHHHHHHHHhC----------CCcc
Q 003296 701 IGDIELCKVIDPSKSTG--SLSTVAGSVGYIPPEYAYTMRVTMA------GNVYSFGVILLELLTG----------KTAV 762 (833)
Q Consensus 701 i~dfgl~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~S~Gvvl~elltg----------~~p~ 762 (833)
|+|||+++......... ......||+.|+|||++.+..++.+ +|||||||++|||+|| +.||
T Consensus 183 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~ 262 (337)
T 3mdy_A 183 IADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPY 262 (337)
T ss_dssp ECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred EEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccH
Confidence 99999998764332211 1134689999999999887665554 9999999999999999 5666
Q ss_pred cCCcc---HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 763 NQGNE---LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 763 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
..... ........... .. ..+.... .......+.++.+++.+||+.||++|||+.||+++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l 329 (337)
T 3mdy_A 263 HDLVPSDPSYEDMREIVCI-KK----LRPSFPN-RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKM 329 (337)
T ss_dssp TTTSCSSCCHHHHHHHHTT-SC----CCCCCCG-GGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred hhhcCCCCchhhhHHHHhh-hc----cCccccc-cchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHH
Confidence 43211 11111111110 01 1111111 111225667899999999999999999999999999875
No 162
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=4.7e-42 Score=375.85 Aligned_cols=258 Identities=21% Similarity=0.297 Sum_probs=208.0
Q ss_pred HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccch----hhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDK----IFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL 625 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~----~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~ 625 (833)
...+.|+..+.||+|+||.||+|++. +|+.||||++..... .......+.+.+|+++++++ +||||+++++++.
T Consensus 91 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 170 (365)
T 2y7j_A 91 EFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYE 170 (365)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe
Confidence 56778999999999999999999985 799999999853221 11112245788999999999 7999999999999
Q ss_pred cCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296 626 ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE 705 (833)
Q Consensus 626 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg 705 (833)
..+..|+||||+++|+|.+++.. ...+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+|++|||
T Consensus 171 ~~~~~~lv~e~~~g~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~DfG 245 (365)
T 2y7j_A 171 SSSFMFLVFDLMRKGELFDYLTE--KVALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFG 245 (365)
T ss_dssp BSSEEEEEECCCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred eCCEEEEEEEeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEecC
Confidence 99999999999999999999975 346999999999999999999999 7799999999999999999999999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccC------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ 779 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 779 (833)
++....... .....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||............ ...
T Consensus 246 ~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i-~~~- 320 (365)
T 2y7j_A 246 FSCHLEPGE---KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMI-MEG- 320 (365)
T ss_dssp TCEECCTTC---CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH-HHT-
T ss_pred cccccCCCc---ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHH-HhC-
Confidence 998775433 2245789999999998753 35889999999999999999999999764432221111 110
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
......+.+...+.++.+++.+||+.||++|||+.|++++
T Consensus 321 ---------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 360 (365)
T 2y7j_A 321 ---------QYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQH 360 (365)
T ss_dssp ---------CCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred ---------CCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 0000111111234568899999999999999999999975
No 163
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=3.1e-42 Score=365.37 Aligned_cols=249 Identities=18% Similarity=0.289 Sum_probs=199.9
Q ss_pred HhcCCccccccCcccEEEEEEcC-CC-------ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SG-------MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~ 626 (833)
++|...+.||+|+||.||+|+.. +| ..||+|++... .....+.|.+|++++++++|||||++++++..
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 83 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA----HRNYSESFFEAASMMSKLSHKHLVLNYGVCVC 83 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG----GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc----cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe
Confidence 46778899999999999999874 34 57999998422 22345789999999999999999999999999
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC--------
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE-------- 698 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~-------- 698 (833)
++..++||||+++|+|.+++... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.
T Consensus 84 ~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~ 159 (289)
T 4fvq_A 84 GDENILVQEFVKFGSLDTYLKKN-KNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPF 159 (289)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccce
Confidence 99999999999999999999863 234899999999999999999999 788999999999999998887
Q ss_pred ceeccceeeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc
Q 003296 699 PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA 777 (833)
Q Consensus 699 ~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 777 (833)
+|++|||+++.... .....||+.|+|||++.+ ..++.++|||||||++|||++|..|+...............
T Consensus 160 ~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~ 233 (289)
T 4fvq_A 160 IKLSDPGISITVLP------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYED 233 (289)
T ss_dssp EEECCCCSCTTTSC------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHT
T ss_pred eeeccCcccccccC------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhc
Confidence 89999998864321 134568999999999887 67899999999999999999966555433333222211111
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. .... .. .+.++.+++.+||+.||++|||++|++++|+++
T Consensus 234 ~-~~~~----~~----------~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l 273 (289)
T 4fvq_A 234 R-HQLP----AP----------KAAELANLINNCMDYEPDHRPSFRAIIRDLNSL 273 (289)
T ss_dssp T-CCCC----CC----------SSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTC
T ss_pred c-CCCC----CC----------CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence 1 1110 00 123567899999999999999999999999875
No 164
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=1.2e-42 Score=373.59 Aligned_cols=260 Identities=19% Similarity=0.241 Sum_probs=207.8
Q ss_pred HHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA 626 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~ 626 (833)
.+.|...+.||+|+||.||+|.. .+++.||||++..... ....+.+.+|+++++++ +|||||+++++|..
T Consensus 26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 102 (316)
T 2xir_A 26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACTK 102 (316)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCC---cHHHHHHHHHHHHHHhcccCCCeeeEEEEEec
Confidence 45788889999999999999973 3678999999953211 12346799999999999 79999999999987
Q ss_pred CC-ceEEEEeeCCCCChhhhhhcCCC--------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296 627 SD-SAYLFYEYAPKGTLFDVLHGCLE--------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI 691 (833)
Q Consensus 627 ~~-~~~lv~ey~~~g~L~~~l~~~~~--------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni 691 (833)
++ ..++||||+++|+|.+++..... ..+++..+..++.|+++||+||| +.+|+||||||+||
T Consensus 103 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Ni 179 (316)
T 2xir_A 103 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNI 179 (316)
T ss_dssp TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGE
T ss_pred CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceE
Confidence 65 49999999999999999986432 12889999999999999999999 78999999999999
Q ss_pred eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296 692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK 770 (833)
Q Consensus 692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~ 770 (833)
+++.++.+|++|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+......
T Consensus 180 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~ 259 (316)
T 2xir_A 180 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 259 (316)
T ss_dssp EECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH
T ss_pred EECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHH
Confidence 999999999999999987654333223345678999999999988889999999999999999998 9999975443222
Q ss_pred HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
........ ... .... ....++.+++.+||+.||++|||+.||+++|+++
T Consensus 260 ~~~~~~~~-~~~------~~~~------~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 308 (316)
T 2xir_A 260 FCRRLKEG-TRM------RAPD------YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 308 (316)
T ss_dssp HHHHHHHT-CCC------CCCT------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHhccC-ccC------CCCC------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 22111111 100 0000 1234678999999999999999999999999875
No 165
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-42 Score=378.61 Aligned_cols=255 Identities=21% Similarity=0.279 Sum_probs=191.1
Q ss_pred cCCccccccCcccEEEEEEcC--C--CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-CCceE
Q 003296 557 ANPLNVELKTRFSTYYKAVMP--S--GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-SDSAY 631 (833)
Q Consensus 557 ~~~~~~ig~g~~g~vy~~~~~--~--~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-~~~~~ 631 (833)
|+..+.||+|+||.||+|... + +..||||.++... .....++|.+|++++++++|||||+++++|.. ++..+
T Consensus 91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~ 167 (373)
T 3c1x_A 91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 167 (373)
T ss_dssp EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS---CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCE
T ss_pred eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeE
Confidence 455688999999999999863 2 2468999984221 22335789999999999999999999999765 46789
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
+||||+++|+|.++++.. ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 168 lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~ 243 (373)
T 3c1x_A 168 VVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 243 (373)
T ss_dssp EEEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEEECCCCCCHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeecccccccc
Confidence 999999999999999753 345899999999999999999999 7899999999999999999999999999998664
Q ss_pred CCCCC--CccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 712 PSKST--GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 712 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
..... .......||+.|+|||++.+..++.++|||||||++|||+| |.+||.+........ ... .... ...+
T Consensus 244 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~-~~~-~~~~---~~~p 318 (373)
T 3c1x_A 244 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV-YLL-QGRR---LLQP 318 (373)
T ss_dssp --------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHH-HHH-TTCC---CCCC
T ss_pred ccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH-HHH-cCCC---CCCC
Confidence 32211 11234567889999999998899999999999999999999 677776433211111 111 1010 0000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 319 ---------~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i 353 (373)
T 3c1x_A 319 ---------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353 (373)
T ss_dssp ---------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11234678999999999999999999999999875
No 166
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=1.4e-41 Score=359.33 Aligned_cols=249 Identities=19% Similarity=0.280 Sum_probs=205.9
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|... +++.||||++. ..........+.+.+|++++++++||||+++++++.+++..++|
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLF-KSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEc-ccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 46788899999999999999975 68899999994 22222334457899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++.. ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+|++|||++......
T Consensus 93 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 167 (284)
T 2vgo_A 93 LEFAPRGELYKELQK--HGRFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL 167 (284)
T ss_dssp ECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred EEeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence 999999999999986 346899999999999999999999 789999999999999999999999999999765432
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
. .....||+.|+|||++.+..++.++|||||||++|||++|+.||.......... ..... +...+.
T Consensus 168 ~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~~~~~--------~~~~~~- 233 (284)
T 2vgo_A 168 R----RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHR-RIVNV--------DLKFPP- 233 (284)
T ss_dssp C----BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH-HHHTT--------CCCCCT-
T ss_pred c----cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHH-HHhcc--------ccCCCC-
Confidence 2 234679999999999999899999999999999999999999997544322211 11111 001111
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..+.++.+++.+||+.||++|||++|+++|
T Consensus 234 -----~~~~~~~~li~~~l~~~p~~Rps~~~ll~h 263 (284)
T 2vgo_A 234 -----FLSDGSKDLISKLLRYHPPQRLPLKGVMEH 263 (284)
T ss_dssp -----TSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred -----cCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence 123467899999999999999999999874
No 167
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.2e-42 Score=369.30 Aligned_cols=265 Identities=16% Similarity=0.200 Sum_probs=200.1
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|+..+.||+|+||.||+|... +|+.||||++..... .....+.+.+|++++++++|||||++++++...+..++|
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 80 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESED--DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV 80 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeecccc--chHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE
Confidence 45778899999999999999974 699999999843221 112346788999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++++|.+++.. ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 81 ~e~~~~~~l~~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 155 (311)
T 4agu_A 81 FEYCDHTVLHELDRY--QRGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGP 155 (311)
T ss_dssp EECCSEEHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred EEeCCCchHHHHHhh--hcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc
Confidence 999999999998875 346899999999999999999999 789999999999999999999999999999876533
Q ss_pred CCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc------------
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD------------ 780 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~------------ 780 (833)
.. ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+................
T Consensus 156 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (311)
T 4agu_A 156 SD--YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTN 233 (311)
T ss_dssp ------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTC
T ss_pred cc--ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccc
Confidence 22 2245679999999999875 56899999999999999999999999865543322111100000
Q ss_pred -ccc--ccccccccCC-chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 781 -KLD--HILDFNVSRT-SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 781 -~~~--~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
... ...++..... .......+.++.+++.+||+.||++|||++|+++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 285 (311)
T 4agu_A 234 QYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH 285 (311)
T ss_dssp GGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred cccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence 000 0000000000 00011234568899999999999999999999875
No 168
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.8e-43 Score=381.16 Aligned_cols=255 Identities=18% Similarity=0.193 Sum_probs=203.4
Q ss_pred HhcCCccccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCc
Q 003296 555 AVANPLNVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDS 629 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~ 629 (833)
++|+..+.||+|+||.||+|+. .+|+.||||+++...........+.+.+|+++++++ +|||||++++++..++.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 4688899999999999999997 478999999995332222234456788999999999 69999999999999999
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
.++|||||++|+|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++.
T Consensus 134 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 208 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQ--RERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKE 208 (355)
T ss_dssp EEEEECCCCSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred EEEEeecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence 9999999999999999986 346899999999999999999999 77899999999999999999999999999987
Q ss_pred eCCCCCCCccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCcccCCc---cHHHHHHHhhcccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVNQGN---ELAKWVLRNSAQQDKLDH 784 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~---~~~~~~~~~~~~~~~~~~ 784 (833)
...... ......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.... ..............
T Consensus 209 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~---- 283 (355)
T 1vzo_A 209 FVADET-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP---- 283 (355)
T ss_dssp CCGGGG-GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCC----
T ss_pred cccCCC-CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCC----
Confidence 643221 12345689999999999875 347899999999999999999999997432 22222211111100
Q ss_pred cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHH
Q 003296 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRML 829 (833)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~L 829 (833)
... ......+.+++.+||+.||++|| +++|++++.
T Consensus 284 ----~~~------~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~ 323 (355)
T 1vzo_A 284 ----PYP------QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL 323 (355)
T ss_dssp ----CCC------TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred ----CCC------cccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence 011 12234678999999999999999 999998763
No 169
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=5.2e-42 Score=361.56 Aligned_cols=254 Identities=19% Similarity=0.262 Sum_probs=206.3
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
+.|+..+.||+|+||.||+|...++..||||++... ....+.|.+|++++++++||||+++++++. .+..++||
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~ 86 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-----SMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIIT 86 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-----SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCC-----cccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEE
Confidence 467788999999999999999888889999999422 124578999999999999999999999986 45689999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
||+++|+|.+++.......+++.++..++.|+++||+||| +.+|+||||||+||++++++.+||+|||+++......
T Consensus 87 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 163 (279)
T 1qpc_A 87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163 (279)
T ss_dssp ECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC
T ss_pred ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcc
Confidence 9999999999997532236899999999999999999999 7899999999999999999999999999998765432
Q ss_pred CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. ......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... +...... .... . ...
T Consensus 164 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-~~~~~~~-~~~~--~----~~~-- 232 (279)
T 1qpc_A 164 YT-AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-EVIQNLE-RGYR--M----VRP-- 232 (279)
T ss_dssp EE-CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-HHHHHHH-TTCC--C----CCC--
T ss_pred cc-cccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH-HHHHHHh-cccC--C----CCc--
Confidence 11 1234567889999999988889999999999999999999 99999754332 2211111 1000 0 000
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus 233 ----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 267 (279)
T 1qpc_A 233 ----DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267 (279)
T ss_dssp ----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ----ccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence 12234678999999999999999999999999864
No 170
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=2e-42 Score=372.83 Aligned_cols=260 Identities=18% Similarity=0.214 Sum_probs=208.1
Q ss_pred HHHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~ 626 (833)
..+.|...+.||+|+||.||+|+.. +++.||||++.... .......|.+|++++++++||||+++++++..
T Consensus 23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 99 (322)
T 1p4o_A 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ 99 (322)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred hhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc---CHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc
Confidence 3457888899999999999999864 47889999995221 11234579999999999999999999999999
Q ss_pred CCceEEEEeeCCCCChhhhhhcCC--------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCL--------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE 698 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~--------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~ 698 (833)
.+..++||||+++|+|.++++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 100 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~~ 176 (322)
T 1p4o_A 100 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFT 176 (322)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCC
T ss_pred CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCCe
Confidence 999999999999999999997421 135799999999999999999999 779999999999999999999
Q ss_pred ceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhc
Q 003296 699 PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSA 777 (833)
Q Consensus 699 ~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~ 777 (833)
+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+... .+......
T Consensus 177 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-~~~~~~~~- 254 (322)
T 1p4o_A 177 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN-EQVLRFVM- 254 (322)
T ss_dssp EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH-HHHHHHHH-
T ss_pred EEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH-HHHHHHHH-
Confidence 99999999986543322222234567899999999988889999999999999999999 8899975432 22211111
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
..... . .. ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 255 ~~~~~-~-----~~------~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~ 297 (322)
T 1p4o_A 255 EGGLL-D-----KP------DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 297 (322)
T ss_dssp TTCCC-C-----CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred cCCcC-C-----CC------CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHh
Confidence 11100 0 00 12234678999999999999999999999999875
No 171
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=3.4e-42 Score=363.94 Aligned_cols=249 Identities=22% Similarity=0.321 Sum_probs=206.4
Q ss_pred HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA---- 626 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~---- 626 (833)
....+|+..+.||+|+||.||+|... +|+.||||++... .+.+.+|++++++++||||+++++++..
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--------~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 79 (284)
T 2a19_B 8 RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN--------NEKAEREVKALAKLDHVNIVHYNGCWDGFDYD 79 (284)
T ss_dssp HHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC--------SGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC
T ss_pred hhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc--------cHHHHHHHHHHHhCCCCCEEEEeeeEeccccC
Confidence 45678999999999999999999975 8999999999422 2467899999999999999999999864
Q ss_pred ------------CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC
Q 003296 627 ------------SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK 694 (833)
Q Consensus 627 ------------~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~ 694 (833)
....++||||+++|+|.+++.......+++..+..++.|++.||.||| +.+|+||||||+||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~ 156 (284)
T 2a19_B 80 PETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLV 156 (284)
T ss_dssp ---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEE
T ss_pred cccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEc
Confidence 345899999999999999998654457999999999999999999999 77999999999999999
Q ss_pred CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHH
Q 003296 695 SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLR 774 (833)
Q Consensus 695 ~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~ 774 (833)
+++.+||+|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|..|+..... +...
T Consensus 157 ~~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~---~~~~ 230 (284)
T 2a19_B 157 DTKQVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSK---FFTD 230 (284)
T ss_dssp ETTEEEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH---HHHH
T ss_pred CCCCEEECcchhheecccccc---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHH---HHHH
Confidence 999999999999987754332 2346799999999999988899999999999999999999999853211 1111
Q ss_pred hhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 775 NSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
. .. .. +.. ..+.++.+++.+||+.||++|||+.|++++|+.++
T Consensus 231 ~-~~-~~--------~~~------~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~ 273 (284)
T 2a19_B 231 L-RD-GI--------ISD------IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK 273 (284)
T ss_dssp H-HT-TC--------CCT------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHT
T ss_pred h-hc-cc--------ccc------cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 0 00 00 110 11235678999999999999999999999998753
No 172
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=1.7e-42 Score=367.19 Aligned_cols=256 Identities=16% Similarity=0.237 Sum_probs=209.8
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
..+|+..+.||+|+||.||+|... ++..||||++.... ...+.|.+|++++++++||||+++++++..++..++
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 86 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI 86 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-----THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEE
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-----HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEE
Confidence 346778899999999999999975 68999999994221 235679999999999999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
||||+++|+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 87 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~ 163 (288)
T 3kfa_A 87 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG 163 (288)
T ss_dssp EEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCS
T ss_pred EEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccC
Confidence 999999999999998765667999999999999999999999 77899999999999999999999999999987643
Q ss_pred CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||....... ........ . .....
T Consensus 164 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~-~~~~~~~~-~------~~~~~ 234 (288)
T 3kfa_A 164 DTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKD-Y------RMERP 234 (288)
T ss_dssp SSS-EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG-HHHHHHTT-C------CCCCC
T ss_pred Ccc-ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHhcc-C------CCCCC
Confidence 322 12234567889999999988889999999999999999999 999997543221 11111100 0 00000
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus 235 ------~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~ 269 (288)
T 3kfa_A 235 ------EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269 (288)
T ss_dssp ------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHH
Confidence 12235688999999999999999999999999864
No 173
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=6.2e-42 Score=366.90 Aligned_cols=260 Identities=18% Similarity=0.284 Sum_probs=197.1
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
.+|+..+.||+|+||.||+|.. .+|+.||||++... ........+.+.+|++++++++||||+++++++..++..++|
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIF-DLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTT-SSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehh-hccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 4688899999999999999996 58999999999422 111223356799999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 634 YEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
|||+++|+|.+++... ....+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 9999999999998642 2346899999999999999999999 7899999999999999999999999999998764
Q ss_pred CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc-HHHHHHHhhcccccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE-LAKWVLRNSAQQDKLDHILDFNV 790 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 790 (833)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ......... ... ....
T Consensus 188 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~-~~~-~~~~----- 258 (310)
T 2wqm_A 188 SKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIE-QCD-YPPL----- 258 (310)
T ss_dssp -------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHH-TTC-SCCC-----
T ss_pred CCCc--cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhh-ccc-CCCC-----
Confidence 3321 22346799999999999988999999999999999999999999975432 222221111 101 0000
Q ss_pred cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. ....+.++.+++.+||+.||++|||++||+++|+++
T Consensus 259 ~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l 295 (310)
T 2wqm_A 259 P-----SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRM 295 (310)
T ss_dssp C-----TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred c-----ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 0 012234678999999999999999999999999876
No 174
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=6e-42 Score=390.78 Aligned_cols=254 Identities=20% Similarity=0.237 Sum_probs=201.9
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
..+.|+..+.||+|+||+||+|+.. +|..||||++.... ........+.+|++++++++|||||+++++|...+..|
T Consensus 35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 112 (494)
T 3lij_A 35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTS--VSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYY 112 (494)
T ss_dssp HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccc--cCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence 4567999999999999999999974 78999999995322 12234578999999999999999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC---CCceeccceeee
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL---KEPQIGDIELCK 708 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~---~~~ki~dfgl~~ 708 (833)
+|||||++|+|.+++.. ...+++..+..++.|+++||+||| +.+|+||||||+|||++.. +.+||+|||+++
T Consensus 113 lv~e~~~~g~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~ 187 (494)
T 3lij_A 113 LVMECYKGGELFDEIIH--RMKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSA 187 (494)
T ss_dssp EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred EEEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCe
Confidence 99999999999998875 346899999999999999999999 7899999999999999764 559999999998
Q ss_pred eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
...... .....+||+.|+|||++. ..|+.++||||+||++|||++|+.||.+..... ............
T Consensus 188 ~~~~~~---~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~------ 256 (494)
T 3lij_A 188 VFENQK---KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE-ILRKVEKGKYTF------ 256 (494)
T ss_dssp ECBTTB---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCCC------
T ss_pred ECCCCc---cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCCC------
Confidence 775432 234578999999999876 569999999999999999999999997654322 221111110100
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....+...+.++.+++.+||+.||++|||+.|+++|
T Consensus 257 ----~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 257 ----DSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp ----CSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred ----CchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 111112334578899999999999999999999865
No 175
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-40 Score=377.05 Aligned_cols=348 Identities=20% Similarity=0.241 Sum_probs=310.8
Q ss_pred CCCCEEECCCCCCCCc-c-cccCCCCCCEEECCCCCCC-CcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296 8 DGLKLLNFSKNELVSL-P-TFNGFAGLEVLDFSSNNLN-GNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV 84 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i-~-~f~~l~~L~~L~Ls~N~l~-~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 84 (833)
++|++|+|++|.++++ | .|..+++|++|+|++|.+. .+.+..|.++++|++|+|++|++++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6799999999999997 4 5999999999999999997 45577899999999999999999999999999999999999
Q ss_pred ccCCcCcccCCcc--ccCCCCCCEEeccCCcCCccCCcc-ccCCCCCcEEECcCCcCCCCCCcccccC--CccCcccccc
Q 003296 85 LSGNAFHGEIPKG--IADYRNLTLIDLSANNLSGSVPDR-IGELSKLEVLILSANNLDGRLPTSLASI--TTLSRFAANQ 159 (833)
Q Consensus 85 L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~l~l~~ 159 (833)
|++|.+++..|.. |..+++|++|+|++|++++..|.. |.++++|++|+|++|.+++..|..+..+ .+|+.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999999855554 999999999999999999888876 8999999999999999999999999887 7899999999
Q ss_pred ccccccCChhh----------hhcCCEEecccccccccCCccCCCC---CCCCEEecccccCcccCC----------CCC
Q 003296 160 NKFSGSVPGGI----------TRFLRNLDLSYNKLLGVIPIDLLSH---PNLQTIDLSVNMLEGSLP----------QNM 216 (833)
Q Consensus 160 n~l~~~~p~~~----------~~~L~~L~Ls~N~l~~~~~~~~~~~---~~L~~L~Ls~N~l~~~~p----------~~~ 216 (833)
|.+.+..+..+ ...|+.|+|++|++.+..|..+... ++|+.|++++|.+.+... ..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 99987554322 2569999999999998887766543 899999999997654321 111
Q ss_pred ----CcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCC
Q 003296 217 ----SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGI 292 (833)
Q Consensus 217 ----~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 292 (833)
.++|+.|++++|.+.+ +++..|..+++|++|+|++|++++..|..|.++++|+.|+|++|.+.+..|..|..+++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred ccccccCceEEEecCccccc-cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 1589999999999876 55667899999999999999999999999999999999999999999888999999999
Q ss_pred CcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccC
Q 003296 293 LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIP 356 (833)
Q Consensus 293 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 356 (833)
|+.|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++..|
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999999999999999999999999998888888999999999999999998776
No 176
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.7e-42 Score=375.23 Aligned_cols=260 Identities=19% Similarity=0.206 Sum_probs=197.1
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----- 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----- 628 (833)
+.|...+.||+|+||.||+|.. .+|+.||||++.... ......+++.+|++++++++|||||++++++...+
T Consensus 25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF--QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccc--cCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 4577889999999999999997 579999999994321 11223467899999999999999999999998763
Q ss_pred -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
..|+||||+ +++|.++++. ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 175 (367)
T 1cm8_A 103 TDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLA 175 (367)
T ss_dssp CCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred ceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecc
Confidence 469999999 8899999985 35899999999999999999999 789999999999999999999999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL 786 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (833)
+..... ....+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+......+.......+....+..
T Consensus 176 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~ 250 (367)
T 1cm8_A 176 RQADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFV 250 (367)
T ss_dssp EECCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred cccccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Confidence 876432 245689999999999876 67999999999999999999999999866544333221111111000000
Q ss_pred cc--------------ccc--CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 787 DF--------------NVS--RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 787 ~~--------------~~~--~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.. ... ...........++.+++.+||+.||++|||++|+++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h 308 (367)
T 1cm8_A 251 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH 308 (367)
T ss_dssp HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence 00 000 0000011224578899999999999999999999985
No 177
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=1.6e-42 Score=375.44 Aligned_cols=260 Identities=19% Similarity=0.256 Sum_probs=206.8
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CC-----ceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SG-----MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA 626 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~-----~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~ 626 (833)
.++|...+.||+|+||.||+|... +| ..||||++..... ....+.+.+|+++++++ +|||||+++++|..
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 121 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAH---ADEKEALMSELKIMSHLGQHENIVNLLGACTH 121 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccC---hHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence 356778899999999999999963 33 4799999953221 12346799999999999 89999999999999
Q ss_pred CCceEEEEeeCCCCChhhhhhcCC------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCL------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK 694 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~ 694 (833)
++..++||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~ 198 (333)
T 2i1m_A 122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLT 198 (333)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEE
T ss_pred CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEEC
Confidence 999999999999999999997431 235799999999999999999999 77999999999999999
Q ss_pred CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHH
Q 003296 695 SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVL 773 (833)
Q Consensus 695 ~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~ 773 (833)
.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.........
T Consensus 199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~ 278 (333)
T 2i1m_A 199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYK 278 (333)
T ss_dssp GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHH
T ss_pred CCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHH
Confidence 999999999999986643332222234567889999999988889999999999999999999 9999975433222111
Q ss_pred HhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. ...... ..... ..+.++.+++.+||+.||++|||+.||+++|+++
T Consensus 279 ~-~~~~~~------~~~~~------~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 324 (333)
T 2i1m_A 279 L-VKDGYQ------MAQPA------FAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQ 324 (333)
T ss_dssp H-HHHTCC------CCCCT------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred H-HhcCCC------CCCCC------CCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHH
Confidence 1 111000 00000 1234678999999999999999999999999875
No 178
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.1e-42 Score=375.03 Aligned_cols=259 Identities=19% Similarity=0.261 Sum_probs=194.9
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHH--HhcCCCCCcccceEEEec-----C
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEV--LGKLSNSNVMTPLAYVLA-----S 627 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~--l~~l~H~niv~~~~~~~~-----~ 627 (833)
++|+..+.||+|+||.||+|+. +|+.||||++... ....+..|.++ +..++||||+++++++.. .
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 84 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA-------NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGR 84 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSC
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc-------chhhHHHHHHHHHHHhccCcchhhheecccccccCCC
Confidence 3577789999999999999977 7899999999422 12445555555 556899999999986543 2
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC---------CeeecCCCccceeeCCCCC
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN---------PILLLDLSTRNIFLKSLKE 698 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~---------~iiHrdlk~~Nill~~~~~ 698 (833)
...++|||||++|+|.+++... ..+|..+..++.|+++||+||| +. +|+||||||+|||++.++.
T Consensus 85 ~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~ 158 (336)
T 3g2f_A 85 MEYLLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDGT 158 (336)
T ss_dssp EEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTSC
T ss_pred ceEEEEEecCCCCcHHHHHhhc---ccchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCCc
Confidence 3578999999999999999753 4589999999999999999999 55 9999999999999999999
Q ss_pred ceeccceeeeeeCCCCC------CCccccccccccccccccccC-------CcccccCcchhhHHHHHHHHhCCCcccCC
Q 003296 699 PQIGDIELCKVIDPSKS------TGSLSTVAGSVGYIPPEYAYT-------MRVTMAGNVYSFGVILLELLTGKTAVNQG 765 (833)
Q Consensus 699 ~ki~dfgl~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~ 765 (833)
+||+|||+++....... .......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||...
T Consensus 159 ~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~ 238 (336)
T 3g2f_A 159 CVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPG 238 (336)
T ss_dssp EEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTT
T ss_pred EEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCc
Confidence 99999999987653221 112234679999999999876 46788999999999999999998887533
Q ss_pred ccHHH----------------HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296 766 NELAK----------------WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829 (833)
Q Consensus 766 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L 829 (833)
..... ........ ....+.++.........+.++.+++.+||+.||++|||++|+++.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L 313 (336)
T 3g2f_A 239 ESVPEYQMAFQTEVGNHPTFEDMQVLVSR-----EKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERM 313 (336)
T ss_dssp SCCCCCCCTTHHHHCSSCCHHHHHHHHTT-----SCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred cchhHHHHhhhcccCCCchHHHHHhhhcc-----cccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHH
Confidence 22110 00000000 0001111111111223566789999999999999999999999999
Q ss_pred Hhc
Q 003296 830 LNA 832 (833)
Q Consensus 830 ~~~ 832 (833)
+++
T Consensus 314 ~~l 316 (336)
T 3g2f_A 314 AEL 316 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 179
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=373.33 Aligned_cols=249 Identities=12% Similarity=0.081 Sum_probs=202.0
Q ss_pred HHhcCCccccccCcccEEEEEE------cCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC---CCCcccceEEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAV------MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS---NSNVMTPLAYV 624 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~~~~~~ 624 (833)
.+.|...+.||+|+||.||+|+ ..+++.||||++... ...+|.+|++++++++ |+|||++++++
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~ 136 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-------NPWEFYIGTQLMERLKPSMQHMFMKFYSAH 136 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-------CHHHHHHHHHHHHHSCGGGGGGBCCEEEEE
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-------ChhHHHHHHHHHHHhhhhhhhhhhhhheee
Confidence 3567788999999999999994 357899999999422 3467889999999887 99999999999
Q ss_pred ecCCceEEEEeeCCCCChhhhhhcC---CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC------
Q 003296 625 LASDSAYLFYEYAPKGTLFDVLHGC---LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS------ 695 (833)
Q Consensus 625 ~~~~~~~lv~ey~~~g~L~~~l~~~---~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~------ 695 (833)
..++..|+|||||++|+|.++++.. ....++|.+++.|+.|+++||+||| +.+||||||||+|||++.
T Consensus 137 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~ 213 (365)
T 3e7e_A 137 LFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQD 213 (365)
T ss_dssp ECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC-
T ss_pred ecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCcc
Confidence 9999999999999999999999742 2456999999999999999999999 789999999999999998
Q ss_pred -----CCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHH
Q 003296 696 -----LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAK 770 (833)
Q Consensus 696 -----~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~ 770 (833)
++.+||+|||+|+..............+||++|||||++.+..|+.++|||||||++|||+||+.||......
T Consensus 214 ~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-- 291 (365)
T 3e7e_A 214 DEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG-- 291 (365)
T ss_dssp -----CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETT--
T ss_pred ccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCC--
Confidence 8999999999998764333233345678999999999999999999999999999999999999999632210
Q ss_pred HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCC-CCHHHHHHHHHh
Q 003296 771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEAR-PKMKSVLRMLLN 831 (833)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~R-ps~~evl~~L~~ 831 (833)
.... ........ ....+.+++.+|++.+|.+| |+++++.+.|++
T Consensus 292 --------~~~~----~~~~~~~~-----~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~ 336 (365)
T 3e7e_A 292 --------ECKP----EGLFRRLP-----HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKK 336 (365)
T ss_dssp --------EEEE----CSCCTTCS-----SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHH
T ss_pred --------ceee----chhccccC-----cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Confidence 0011 11111111 12355678889999999999 678888777765
No 180
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=375.49 Aligned_cols=267 Identities=13% Similarity=0.089 Sum_probs=200.1
Q ss_pred HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchh-------hhccChhHHHHHHHHHhcCCCCCcccceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKI-------FQLGSHHKFDKELEVLGKLSNSNVMTPLAY 623 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~-------~~~~~~~~~~~E~~~l~~l~H~niv~~~~~ 623 (833)
+.|...+.||+|+||.||+|... ++..||||+....... ......+.+.+|+.+++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 46788899999999999999975 6789999998533211 111234568899999999999999999999
Q ss_pred Eec----CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC--
Q 003296 624 VLA----SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-- 697 (833)
Q Consensus 624 ~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-- 697 (833)
+.. .+..|+||||+ +|+|.+++... ..+++.+++.++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~ 190 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQN--GTFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPD 190 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGG--GBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTT
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCC
Confidence 988 67899999999 99999999863 37999999999999999999999 77999999999999999877
Q ss_pred CceeccceeeeeeCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHH
Q 003296 698 EPQIGDIELCKVIDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWV 772 (833)
Q Consensus 698 ~~ki~dfgl~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~ 772 (833)
.+||+|||+++........ .......||+.|+|||++.+..++.++|||||||++|||+||+.||.+........
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~ 270 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAV 270 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHH
Confidence 9999999999876432211 11245689999999999998889999999999999999999999996422111111
Q ss_pred HH-hhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 773 LR-NSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 773 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. ...........+..... ....+.++.+++.+||+.||++|||++||++.|+++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 326 (345)
T 2v62_A 271 QTAKTNLLDELPQSVLKWAP-----SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPH 326 (345)
T ss_dssp HHHHHHHHHTTTHHHHHHSC-----TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTT
T ss_pred HHHHHhhcccccHHHHhhcc-----ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhcc
Confidence 11 00000000000000000 002344788999999999999999999999999875
No 181
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=1.3e-41 Score=373.60 Aligned_cols=261 Identities=17% Similarity=0.148 Sum_probs=196.3
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----- 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----- 628 (833)
+.|+..+.||+|+||.||+|.. .+|+.||||++.... ......+.+.+|++++++++|||||++++++...+
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 102 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF--QNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 102 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTT--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEecccc--CChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence 4678889999999999999996 479999999995321 11223467899999999999999999999998765
Q ss_pred -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
..|+|||||++ +|.+++.. .+++.++..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||++
T Consensus 103 ~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 174 (371)
T 2xrw_A 103 QDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA 174 (371)
T ss_dssp CEEEEEEECCSE-EHHHHHHS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC-
T ss_pred cceEEEEEcCCC-CHHHHHhh----ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecc
Confidence 68999999974 88888863 4899999999999999999999 789999999999999999999999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc--
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI-- 785 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~-- 785 (833)
+...... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+......+............+.
T Consensus 175 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 251 (371)
T 2xrw_A 175 RTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMK 251 (371)
T ss_dssp ------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHT
T ss_pred ccccccc---ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 8764322 22456899999999999998999999999999999999999999987665544433221111000000
Q ss_pred ------------------------cc-ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 786 ------------------------LD-FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 786 ------------------------~~-~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.. ...+...........++.+++.+||+.||++|||++|+++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h 319 (371)
T 2xrw_A 252 KLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH 319 (371)
T ss_dssp TSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred HhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence 00 00011111223346788999999999999999999999985
No 182
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=1.3e-41 Score=399.84 Aligned_cols=252 Identities=21% Similarity=0.211 Sum_probs=208.3
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~ 631 (833)
.++|+..++||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|.+++..+ +||+|+++++++.+.+..|
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~-~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILK-KDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEE-HHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEe-ccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 356888899999999999999974 78999999994 32333345567899999999998 7999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
+||||+++|+|.++++. ...+++.++..|+.|++.||+||| +.+||||||||+|||++.++.+||+|||+|+...
T Consensus 419 lV~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~ 493 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQ--VGRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 493 (674)
T ss_dssp EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred EEEeCcCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence 99999999999999986 346999999999999999999999 7899999999999999999999999999998653
Q ss_pred CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
.... ...+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+..... ........... ++
T Consensus 494 ~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~-~~~~i~~~~~~--------~p 562 (674)
T 3pfq_A 494 WDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE-LFQSIMEHNVA--------YP 562 (674)
T ss_dssp CTTC--CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHSSCCC--------CC
T ss_pred cCCc--ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHH-HHHHHHhCCCC--------CC
Confidence 3322 2356789999999999999999999999999999999999999998654322 22221111110 11
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHHH
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKM-----KSVLRM 828 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~-----~evl~~ 828 (833)
...+.++.+++.+||+.||++||++ +||++|
T Consensus 563 ------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h 598 (674)
T 3pfq_A 563 ------KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 598 (674)
T ss_dssp ------TTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSS
T ss_pred ------ccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcC
Confidence 1234578899999999999999998 777654
No 183
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1e-41 Score=365.76 Aligned_cols=260 Identities=17% Similarity=0.203 Sum_probs=195.9
Q ss_pred HHhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD- 628 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~- 628 (833)
.+.|...+.||+|+||.||+|... ++..||||++..... .....+.|.+|++++++++|||||++++++...+
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 33 RNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS--SQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp GGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC--CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred HHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc--chhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 456788899999999999999863 456899999952211 1123467999999999999999999999998765
Q ss_pred ----ceEEEEeeCCCCChhhhhhcC----CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCce
Q 003296 629 ----SAYLFYEYAPKGTLFDVLHGC----LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ 700 (833)
Q Consensus 629 ----~~~lv~ey~~~g~L~~~l~~~----~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~k 700 (833)
..++||||+++|+|.+++... ....+++.+++.++.|+++||.||| +.+|+||||||+||+++.++.+|
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~k 187 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVC 187 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEE
T ss_pred cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEE
Confidence 359999999999999998532 2346999999999999999999999 78999999999999999999999
Q ss_pred eccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccc
Q 003296 701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQ 779 (833)
Q Consensus 701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 779 (833)
|+|||+++...............|++.|+|||++.+..++.++|||||||++|||++ |+.||........+.. ....
T Consensus 188 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~-~~~~- 265 (313)
T 3brb_A 188 VADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDY-LLHG- 265 (313)
T ss_dssp ECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHH-HHTT-
T ss_pred EeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHH-HHcC-
Confidence 999999987644332222234568899999999998899999999999999999999 8899975443221111 1110
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
... ... ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 266 ~~~------~~~------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l 306 (313)
T 3brb_A 266 HRL------KQP------EDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKL 306 (313)
T ss_dssp CCC------CCB------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCC------CCC------ccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 000 000 12234688999999999999999999999999875
No 184
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-40 Score=384.90 Aligned_cols=405 Identities=22% Similarity=0.218 Sum_probs=306.5
Q ss_pred CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
++|+.|++++|.+++++ .|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|+|+.+++ . .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-C--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS-C--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc-c--ccccCCEEEC
Confidence 68999999999999985 69999999999999999999999999999999999999999996544 4 8999999999
Q ss_pred cCCcCccc-CCccccCCCCCCEEeccCCcCCccCCccccCCCCC--cEEECcCCcC--CCCCCcccccCC--ccCccccc
Q 003296 86 SGNAFHGE-IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKL--EVLILSANNL--DGRLPTSLASIT--TLSRFAAN 158 (833)
Q Consensus 86 ~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~L~Ls~N~l--~~~~p~~~~~l~--~L~~l~l~ 158 (833)
++|++++. .|..|+++++|++|+|++|++++. .|..+++| ++|+|++|.+ ++..|..+..+. .+ .++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFH 204 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEEC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEec
Confidence 99999974 468999999999999999999863 56666666 9999999999 888888888765 22 33555
Q ss_pred cccccccCChhh---hhcCCEEecccc----------------------------cccc-----cCCccCCCCCCCCEEe
Q 003296 159 QNKFSGSVPGGI---TRFLRNLDLSYN----------------------------KLLG-----VIPIDLLSHPNLQTID 202 (833)
Q Consensus 159 ~n~l~~~~p~~~---~~~L~~L~Ls~N----------------------------~l~~-----~~~~~~~~~~~L~~L~ 202 (833)
.|.+.+.++... ...|+.|++++| .+.+ ..+ . ...++|++|+
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-~-~~~~~L~~L~ 282 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-F-FWPRPVEYLN 282 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-H-HTTSSEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-h-hhcccccEEE
Confidence 555554443321 233455555544 2221 111 1 1234899999
Q ss_pred cccccCcccCCCCCC----cCCcEEEcCCccccC-CCCccccCC---CCCCCEEECCCCCCCCCCCccccCCCCCcEEEc
Q 003296 203 LSVNMLEGSLPQNMS----PNLVRLRLGTNLLIG-EIPSATFTS---LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNL 274 (833)
Q Consensus 203 Ls~N~l~~~~p~~~~----~~L~~L~l~~n~l~~-~~~~~~f~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 274 (833)
+++|.++|.+|..+. .+++.|.+.++.... .+|...+.. ..+|++|++++|.+.... ....+++|++|++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 999999888887652 455555444332211 233222222 256888999988876432 1267888999999
Q ss_pred cCCccCCCChhhhCCCCCCcEEEccCCcCCCc--CchhhcCCCcCceeeccCCcCcccCc-cccccCCCCCEEEccCCcc
Q 003296 275 AQNELNGSLPIQLGSLGILQVMNLQLNKLSGE--IPSQFSQLKLLSTMNISWNSLSGSIP-SFLSNLTNLVNLNLRQNNL 351 (833)
Q Consensus 275 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l 351 (833)
++|.+++..|..+..+++|+.|++++|++++. .|..|..+++|++|++++|.+++.+| ..+..+++|+.|+|++|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 99998888888888888999999999988874 35668888899999999999887444 4578888999999999998
Q ss_pred ccccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEecccCcCccccc
Q 003296 352 NGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIP 426 (833)
Q Consensus 352 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 426 (833)
++..|..+. ++|+.|+|++|+++ .+|.....+. +.|++++|++++..+..|..+++|+.|++++|.+.+..|
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 877666554 68889999999887 4444333332 678899999985444449999999999999999987655
No 185
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.5e-42 Score=361.15 Aligned_cols=254 Identities=17% Similarity=0.229 Sum_probs=203.3
Q ss_pred cCCcc-ccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 557 ANPLN-VELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 557 ~~~~~-~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
|...+ .||+|+||.||+|+.. ++..||||+++... .....+.+.+|++++++++||||+++++++ ..+..++
T Consensus 11 ~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 11 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp EEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred hhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc---chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 44444 8999999999999853 67889999995321 122356799999999999999999999999 4567999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
||||+++|+|.+++... ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 87 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~ 162 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGA 162 (287)
T ss_dssp EEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred EEEeCCCCCHHHHHHhC-CccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeecc
Confidence 99999999999999753 346999999999999999999999 78999999999999999999999999999987753
Q ss_pred CCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296 713 SKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV 790 (833)
Q Consensus 713 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (833)
.... .......||+.|+|||++.+..++.++|||||||++|||+| |+.||........ .... ..... ...
T Consensus 163 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~i-~~~~~------~~~ 234 (287)
T 1u59_A 163 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV-MAFI-EQGKR------MEC 234 (287)
T ss_dssp CSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHH-HHHH-HTTCC------CCC
T ss_pred CcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHH-HHHH-hcCCc------CCC
Confidence 3221 11233467899999999988889999999999999999999 9999975443221 1111 11110 001
Q ss_pred cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. ...+.++.+++.+||+.||++||++.|++++|+++
T Consensus 235 ~------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 270 (287)
T 1u59_A 235 P------PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270 (287)
T ss_dssp C------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred C------CCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1 12345788999999999999999999999999875
No 186
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=6.1e-42 Score=368.02 Aligned_cols=264 Identities=20% Similarity=0.220 Sum_probs=195.3
Q ss_pred hcCC-ccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296 556 VANP-LNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 556 ~~~~-~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l 632 (833)
.|.. .+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|++++.++ +|||||++++++..++..|+
T Consensus 13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l 88 (316)
T 2ac3_A 13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQ----PGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL 88 (316)
T ss_dssp SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECC----SSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeC----cchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence 4555 37899999999999996 47999999999432 123467899999999995 79999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---ceeccceeeee
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---PQIGDIELCKV 709 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---~ki~dfgl~~~ 709 (833)
||||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++.
T Consensus 89 v~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~ 163 (316)
T 2ac3_A 89 VFEKMRGGSILSHIHK--RRHFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSG 163 (316)
T ss_dssp EEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-
T ss_pred EEEcCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCccc
Confidence 9999999999999986 346899999999999999999999 779999999999999998776 89999999876
Q ss_pred eCCCCC-----CCccccccccccccccccccC-----CcccccCcchhhHHHHHHHHhCCCcccCCccHH-HHHHHhhc-
Q 003296 710 IDPSKS-----TGSLSTVAGSVGYIPPEYAYT-----MRVTMAGNVYSFGVILLELLTGKTAVNQGNELA-KWVLRNSA- 777 (833)
Q Consensus 710 ~~~~~~-----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~-~~~~~~~~- 777 (833)
...... .......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+..... .|......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~ 243 (316)
T 2ac3_A 164 IKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACP 243 (316)
T ss_dssp ------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCH
T ss_pred cccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccch
Confidence 532211 111234579999999999864 568999999999999999999999997532210 00000000
Q ss_pred --ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 778 --QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 778 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.......+.......+.......+.++.+++.+||+.||++|||+.|+++|
T Consensus 244 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 296 (316)
T 2ac3_A 244 ACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH 296 (316)
T ss_dssp HHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred hHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 000000000001111111111234578899999999999999999999985
No 187
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=3.3e-42 Score=371.97 Aligned_cols=266 Identities=17% Similarity=0.177 Sum_probs=195.7
Q ss_pred HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
..+.|...+.||+|+||.||+|+. .+|+.||||++.... ......+.+.+|++++++++|||||++++++..++..+
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEH--EEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH 109 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC----------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccc--cccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence 345788899999999999999996 589999999995322 12233467889999999999999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee-----CCCCCceecccee
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL-----KSLKEPQIGDIEL 706 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill-----~~~~~~ki~dfgl 706 (833)
+||||++ |+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||+ ++.+.+||+|||+
T Consensus 110 lv~e~~~-~~L~~~~~~--~~~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~ 183 (329)
T 3gbz_A 110 LIFEYAE-NDLKKYMDK--NPDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183 (329)
T ss_dssp EEEECCS-EEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred EEEecCC-CCHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence 9999998 599999986 346899999999999999999999 7899999999999999 4555699999999
Q ss_pred eeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc--
Q 003296 707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD-- 783 (833)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-- 783 (833)
++....... .....+||+.|+|||++.+. .++.++|||||||++|||++|+.||.+...................
T Consensus 184 a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 261 (329)
T 3gbz_A 184 ARAFGIPIR--QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTT 261 (329)
T ss_dssp HHHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTT
T ss_pred ccccCCccc--ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhh
Confidence 987643221 22456789999999998864 4899999999999999999999999866544333222111000000
Q ss_pred --ccc--------cccccCCchh---HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 784 --HIL--------DFNVSRTSLA---VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 784 --~~~--------~~~~~~~~~~---~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
... .+........ ......++.+++.+||+.||++|||++|+++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 319 (329)
T 3gbz_A 262 WPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEH 319 (329)
T ss_dssp STTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred hhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCC
Confidence 000 0000000000 00123578899999999999999999999875
No 188
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=1.3e-41 Score=361.49 Aligned_cols=251 Identities=18% Similarity=0.250 Sum_probs=205.6
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
..|...+.||+|+||.||+|... +|+.||+|++... ........+.+.+|++++++++|||||++++++..++..++|
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKS-LLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG-GCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechh-hccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 45777899999999999999975 6889999998422 111223356789999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 94 ~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 168 (294)
T 2rku_A 94 LELCRRRSLLELHKR--RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 168 (294)
T ss_dssp EECCTTCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence 999999999999875 346899999999999999999999 779999999999999999999999999999876533
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||........+.... ..... .+.
T Consensus 169 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~-~~~~~--------~~~- 236 (294)
T 2rku_A 169 GE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIK-KNEYS--------IPK- 236 (294)
T ss_dssp TC--CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH-TTCCC--------CCT-
T ss_pred cc--ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh-hccCC--------Ccc-
Confidence 22 2244679999999999998889999999999999999999999997654332222111 11000 110
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.....+.+++.+||+.||++|||++|++++
T Consensus 237 -----~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 237 -----HINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp -----TSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred -----ccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 123467789999999999999999999875
No 189
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=1.6e-42 Score=374.47 Aligned_cols=266 Identities=21% Similarity=0.245 Sum_probs=206.1
Q ss_pred HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--C
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--S 627 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~ 627 (833)
+.|+..+.||+|+||.||+|+. .+|+.||||++..... ...+.|.+|++++++++||||+++++++.. .
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 98 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGP----DQQRDFQREIQILKALHSDFIVKYRGVSYGPGR 98 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCH----HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSS
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCH----HHHHHHHHHHHHHHhcCCCceeEEEEEEecCCC
Confidence 4677889999999999999983 4789999999953321 234679999999999999999999999874 4
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
+..++||||+++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~ 174 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFLQRH-RARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLA 174 (327)
T ss_dssp CEEEEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGC
T ss_pred ceEEEEEeecCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccc
Confidence 5689999999999999999753 235899999999999999999999 789999999999999999999999999999
Q ss_pred eeeCCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc--cc---
Q 003296 708 KVIDPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ--DK--- 781 (833)
Q Consensus 708 ~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~--~~--- 781 (833)
+......... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ......... ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~--~~~~~~~~~~~~~~~~ 252 (327)
T 3lxl_A 175 KLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE--FLRMMGCERDVPALSR 252 (327)
T ss_dssp EECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH--HHHHCC----CCHHHH
T ss_pred eecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccch--hhhhcccccccccHHH
Confidence 8775433211 123456889999999999888999999999999999999999999642211 100000000 00
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
....+....... .....+.++.+++.+||+.||++|||++|++++|+.+
T Consensus 253 ~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 301 (327)
T 3lxl_A 253 LLELLEEGQRLP--APPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDML 301 (327)
T ss_dssp HHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC
T ss_pred HHHHhhcccCCC--CCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 000000000000 0112345788999999999999999999999999875
No 190
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.1e-41 Score=389.72 Aligned_cols=256 Identities=17% Similarity=0.179 Sum_probs=203.8
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhh---------hccChhHHHHHHHHHhcCCCCCcccceE
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIF---------QLGSHHKFDKELEVLGKLSNSNVMTPLA 622 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~---------~~~~~~~~~~E~~~l~~l~H~niv~~~~ 622 (833)
..+.|...+.||+|+||+||+|... +|+.||||++....... .....+.+.+|++++++++|||||++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 3467888999999999999999974 78999999995322110 0134578999999999999999999999
Q ss_pred EEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---Cc
Q 003296 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EP 699 (833)
Q Consensus 623 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~ 699 (833)
+|.+++..|+|||||++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++ .+
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~ 188 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIIN--RHKFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNI 188 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSE
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccE
Confidence 99999999999999999999999876 346999999999999999999999 78999999999999998775 68
Q ss_pred eeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296 700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ 779 (833)
Q Consensus 700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 779 (833)
||+|||+++...... .....+||+.|+|||++. ..|+.++||||+||++|||++|+.||.+.... +........
T Consensus 189 kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~~~i~~~- 262 (504)
T 3q5i_A 189 KIVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ-DIIKKVEKG- 262 (504)
T ss_dssp EECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHC-
T ss_pred EEEECCCCEEcCCCC---ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHcC-
Confidence 999999998775432 234568999999999876 46999999999999999999999999764432 222111111
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
........+...+.++.+++.+||+.||++|||++|+++|
T Consensus 263 ---------~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 263 ---------KYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp ---------CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ---------CCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 0111111122345678899999999999999999999875
No 191
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=1.9e-41 Score=359.49 Aligned_cols=248 Identities=21% Similarity=0.271 Sum_probs=199.5
Q ss_pred cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----CCceE
Q 003296 557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----SDSAY 631 (833)
Q Consensus 557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----~~~~~ 631 (833)
|...+.||+|+||.||+|.. .++..||+|++.... ......+.|.+|++++++++|||||+++++|.. ....+
T Consensus 28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRK--LTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchh--hCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 55667899999999999997 478899999984221 112235679999999999999999999999875 35589
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeC-CCCCceeccceeee
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLK-SLKEPQIGDIELCK 708 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~-~~~~~ki~dfgl~~ 708 (833)
+||||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+ |+||||||+||+++ .++.+||+|||++.
T Consensus 106 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~ 180 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred EEEEecCCCCHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence 99999999999999986 346899999999999999999999 666 99999999999998 78999999999997
Q ss_pred eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
..... ......||+.|+|||++. ..++.++||||+||++|||++|+.||.................. ....
T Consensus 181 ~~~~~----~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~-- 251 (290)
T 1t4h_A 181 LKRAS----FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVK--PASF-- 251 (290)
T ss_dssp GCCTT----SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCC--CGGG--
T ss_pred ccccc----ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCC--cccc--
Confidence 54322 224567999999999876 45999999999999999999999999876555444333222110 0000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....+.++.+++.+||+.||++|||++|+++|
T Consensus 252 --------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 283 (290)
T 1t4h_A 252 --------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp --------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred --------CCCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence 01123467899999999999999999999875
No 192
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=6.4e-42 Score=387.25 Aligned_cols=195 Identities=21% Similarity=0.222 Sum_probs=153.5
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~ 628 (833)
+.|+..+.||+|+||.||+|+.. +|+.||||++.... ......+.+.+|+++|++++|||||+++++|... .
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 130 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF--EDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD 130 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh--cCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence 46888999999999999999974 79999999994321 1222356799999999999999999999999543 5
Q ss_pred ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK 708 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~ 708 (833)
..|+||||+ +|+|.+++.. ...+++..+..++.|++.||+||| +.+||||||||+|||++.++.+||+|||+|+
T Consensus 131 ~~~lv~e~~-~~~L~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~ 204 (458)
T 3rp9_A 131 ELYVVLEIA-DSDFKKLFRT--PVYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLAR 204 (458)
T ss_dssp CEEEEECCC-SEEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred eEEEEEecc-ccchhhhccc--CCCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccch
Confidence 689999998 4799999976 456999999999999999999999 7899999999999999999999999999998
Q ss_pred eeCCCCCC-------------------------Cccccccccccccccccc-cCCcccccCcchhhHHHHHHHHh
Q 003296 709 VIDPSKST-------------------------GSLSTVAGSVGYIPPEYA-YTMRVTMAGNVYSFGVILLELLT 757 (833)
Q Consensus 709 ~~~~~~~~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~S~Gvvl~ellt 757 (833)
........ ......+||+.|||||++ .+..|+.++|||||||++|||+|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt 279 (458)
T 3rp9_A 205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN 279 (458)
T ss_dssp CTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred hccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence 76422110 123456899999999976 45679999999999999999999
No 193
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=6.8e-42 Score=369.47 Aligned_cols=259 Identities=19% Similarity=0.261 Sum_probs=202.3
Q ss_pred HHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~ 627 (833)
.+.|...+.||+|+||.||+|+. .++..||||++..... .....+|.+|+.++++++|||||++++++..+
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 105 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS---EQDELDFLMEALIISKFNHQNIVRCIGVSLQS 105 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccc---hhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCC
Confidence 35688889999999999999984 3678999999942211 12346799999999999999999999999999
Q ss_pred CceEEEEeeCCCCChhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCc
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLE-----NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEP 699 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~-----~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ 699 (833)
+..|+||||+++|+|.+++..... ..+++.+++.++.|++.||+||| +.+|+||||||+||+++. +..+
T Consensus 106 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~ 182 (327)
T 2yfx_A 106 LPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVA 182 (327)
T ss_dssp SSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCE
T ss_pred CCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceE
Confidence 999999999999999999986432 35899999999999999999999 789999999999999984 4469
Q ss_pred eeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcc
Q 003296 700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQ 778 (833)
Q Consensus 700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~ 778 (833)
|++|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||...... .........
T Consensus 183 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~ 261 (327)
T 2yfx_A 183 KIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ-EVLEFVTSG 261 (327)
T ss_dssp EECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-HHHHHHHTT
T ss_pred EECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH-HHHHHHhcC
Confidence 9999999976543332222244678999999999988889999999999999999998 99999754322 211111111
Q ss_pred cccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
... ... ...+..+.+++.+||+.||++|||+.|++++|+.+
T Consensus 262 -~~~------~~~------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~ 302 (327)
T 2yfx_A 262 -GRM------DPP------KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 302 (327)
T ss_dssp -CCC------CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -CCC------CCC------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 100 000 11234678999999999999999999999999864
No 194
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=376.23 Aligned_cols=260 Identities=14% Similarity=0.125 Sum_probs=202.8
Q ss_pred HhcCCccccccCcccEEEEEEcC---------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCccc------
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP---------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMT------ 619 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~---------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~------ 619 (833)
+.|...+.||+|+||.||+|+.. +++.||||++.. .+.+.+|++++++++|||||+
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~---------~~~~~~E~~~l~~l~h~niv~~~~~~~ 112 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAK---------DGRLFNEQNFFQRAAKPLQVNKWKKLY 112 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEET---------TSTHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecc---------cchHHHHHHHHHHhcccchhhhhhhhc
Confidence 46788899999999999999975 389999999842 146899999999999999998
Q ss_pred ---------ceEEEec-CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCcc
Q 003296 620 ---------PLAYVLA-SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTR 689 (833)
Q Consensus 620 ---------~~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~ 689 (833)
+++++.. ++..|+||||+ +|+|.+++.......+++.++..++.|++.||+||| +.+|+||||||+
T Consensus 113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~ 188 (352)
T 2jii_A 113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAE 188 (352)
T ss_dssp TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGG
T ss_pred cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHH
Confidence 6777776 67899999999 999999998753457999999999999999999999 779999999999
Q ss_pred ceeeCCCC--CceeccceeeeeeCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcc
Q 003296 690 NIFLKSLK--EPQIGDIELCKVIDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAV 762 (833)
Q Consensus 690 Nill~~~~--~~ki~dfgl~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~ 762 (833)
||+++.++ .+||+|||+++........ .......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 189 NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf 268 (352)
T 2jii_A 189 NIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPW 268 (352)
T ss_dssp GEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTT
T ss_pred HEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence 99999988 8999999999876432211 1123458999999999999989999999999999999999999999
Q ss_pred cCCc-cHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 763 NQGN-ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 763 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.... ....................+.... ....+.++.+++.+||+.||++|||++||++.|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 334 (352)
T 2jii_A 269 TNCLPNTEDIMKQKQKFVDKPGPFVGPCGH-----WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEAL 334 (352)
T ss_dssp GGGTTCHHHHHHHHHHHHHSCCCEECTTSC-----EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHhccCChhhhhhhccc-----cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHH
Confidence 8543 2211111111000111111111000 001235688999999999999999999999999875
No 195
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.6e-41 Score=367.25 Aligned_cols=256 Identities=19% Similarity=0.271 Sum_probs=197.6
Q ss_pred hcCCccccccCcccEEEEEEcCC-----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 556 VANPLNVELKTRFSTYYKAVMPS-----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
.|...+.||+|+||.||+|.... +..||||++.... .......|.+|++++++++|||||++++++...+..
T Consensus 45 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 121 (333)
T 1mqb_A 45 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY---TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM 121 (333)
T ss_dssp TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred HhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCc
Confidence 34456899999999999998642 3469999995321 112346799999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
++||||+++|+|.+++... ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 122 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 197 (333)
T 1mqb_A 122 MIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL 197 (333)
T ss_dssp EEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred EEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhh
Confidence 9999999999999999763 346999999999999999999999 778999999999999999999999999999876
Q ss_pred CCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 711 DPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 711 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
...... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... +.... ........
T Consensus 198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~-~~~~~-~~~~~~~~----- 270 (333)
T 1mqb_A 198 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH-EVMKA-INDGFRLP----- 270 (333)
T ss_dssp -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHH-HHTTCCCC-----
T ss_pred ccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH-HHHHH-HHCCCcCC-----
Confidence 433211 11223457889999999988899999999999999999999 99999754332 11111 11111000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. ...+.++.+++.+||+.||++||++.|++++|+++
T Consensus 271 -~~------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 307 (333)
T 1mqb_A 271 -TP------MDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 307 (333)
T ss_dssp -CC------TTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred -Cc------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 00 12234678999999999999999999999999864
No 196
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=5.7e-41 Score=358.55 Aligned_cols=256 Identities=16% Similarity=0.209 Sum_probs=202.9
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--CCce
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--SDSA 630 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~~~~ 630 (833)
.+.|...+.||+|+||.||+|.. .+|+.||||++............+.+.+|++++++++||||+++++++.. .+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 35788999999999999999997 47899999999532222222345789999999999999999999999853 4578
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
++||||+++| |.+++.......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+|++|||+++..
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~ 159 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEAL 159 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeecccccccc
Confidence 9999999876 888887655567999999999999999999999 789999999999999999999999999999877
Q ss_pred CCCCCCCccccccccccccccccccCCc--ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYAYTMR--VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
.............||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.... ...........
T Consensus 160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~~~~i~~~~~-------- 230 (305)
T 2wtk_C 160 HPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY-KLFENIGKGSY-------- 230 (305)
T ss_dssp CTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHCCC--------
T ss_pred CccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH-HHHHHHhcCCC--------
Confidence 5433333334567999999999987543 478999999999999999999999754322 22211111100
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.... .....+.+++.+||+.||++|||++|++++
T Consensus 231 ~~~~------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 231 AIPG------DCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp CCCS------SSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred CCCC------ccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 0111 123467789999999999999999999975
No 197
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-41 Score=361.91 Aligned_cols=256 Identities=20% Similarity=0.251 Sum_probs=200.4
Q ss_pred cCCccccccCcccEEEEEEcC-C---CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce-E
Q 003296 557 ANPLNVELKTRFSTYYKAVMP-S---GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-Y 631 (833)
Q Consensus 557 ~~~~~~ig~g~~g~vy~~~~~-~---~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~-~ 631 (833)
|+..+.||+|+||.||+|... + +..||||++..... ....+.|.+|++++++++|||||++++++...+.. +
T Consensus 23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 99 (298)
T 3pls_A 23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITE---MQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH 99 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCS---HHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred EccCceeccCCCceEEEEEEecCCCceeeeeeeecccccc---HHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence 445588999999999999853 2 34799999853221 22356899999999999999999999999876665 9
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
+||||+.+|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 100 ~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 175 (298)
T 3pls_A 100 VLLPYMCHGDLLQFIRSP-QRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDIL 175 (298)
T ss_dssp EEECCCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTT
T ss_pred EEEecccCCCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCccccc
Confidence 999999999999999863 346899999999999999999999 7789999999999999999999999999997653
Q ss_pred CCC--CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296 712 PSK--STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN 789 (833)
Q Consensus 712 ~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (833)
... .........||+.|+|||.+.+..++.++|||||||++|||++|..|+................ ... .
T Consensus 176 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~-~~~------~ 248 (298)
T 3pls_A 176 DREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQG-RRL------P 248 (298)
T ss_dssp TGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTT-CCC------C
T ss_pred CCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcC-CCC------C
Confidence 221 1112234678999999999999899999999999999999999666654333322221111111 000 0
Q ss_pred ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. ...+.++.+++.+||+.||++|||++|++++|+++
T Consensus 249 ~~------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~ 285 (298)
T 3pls_A 249 QP------EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQI 285 (298)
T ss_dssp CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CC------ccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 00 11234678999999999999999999999999875
No 198
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=1.4e-41 Score=368.10 Aligned_cols=251 Identities=18% Similarity=0.250 Sum_probs=205.9
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
..|...+.||+|+||.||+|... +++.||+|++... ........+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKS-LLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG-GCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechh-hhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 46778899999999999999975 6889999998422 111223356799999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++++|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 120 ~e~~~~~~L~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 194 (335)
T 2owb_A 120 LELCRRRSLLELHKR--RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 194 (335)
T ss_dssp ECCCTTCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EecCCCCCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence 999999999999875 346899999999999999999999 779999999999999999999999999999876533
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||........+.... ..... +..
T Consensus 195 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~-~~~~~--------~~~- 262 (335)
T 2owb_A 195 GE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIK-KNEYS--------IPK- 262 (335)
T ss_dssp TC--CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH-HTCCC--------CCT-
T ss_pred cc--cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHh-cCCCC--------CCc-
Confidence 22 2245679999999999998889999999999999999999999997654332222111 11000 110
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....++.+++.+||+.||++|||++|++++
T Consensus 263 -----~~~~~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 263 -----HINPVAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp -----TSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred -----cCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 122457789999999999999999999874
No 199
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=7.8e-42 Score=381.93 Aligned_cols=200 Identities=24% Similarity=0.219 Sum_probs=173.9
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC------CCCCcccceEEEecC
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL------SNSNVMTPLAYVLAS 627 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l------~H~niv~~~~~~~~~ 627 (833)
..|+..+.||+|+||.||+|... +|+.||||++.... ...+.+.+|+++++.+ +|+|||++++++...
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 171 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-----RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR 171 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-----HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-----chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence 45888899999999999999864 68999999995321 1235678899888877 577999999999999
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC--ceeccce
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE--PQIGDIE 705 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~--~ki~dfg 705 (833)
+..++||||++ |+|.+++.......+++..+..++.|++.||+||| +.+||||||||+|||++.++. +||+|||
T Consensus 172 ~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG 247 (429)
T 3kvw_A 172 NHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFG 247 (429)
T ss_dssp TEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCT
T ss_pred CeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecc
Confidence 99999999996 69999998765556999999999999999999999 779999999999999999887 9999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL 768 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~ 768 (833)
+++..... ....+||+.|||||++.+..|+.++|||||||++|||+||+.||.+....
T Consensus 248 ~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~ 305 (429)
T 3kvw_A 248 SSCYEHQR-----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEG 305 (429)
T ss_dssp TCEETTCC-----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred cceecCCc-----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHH
Confidence 99765322 23568999999999999999999999999999999999999999865543
No 200
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=5.2e-42 Score=361.39 Aligned_cols=250 Identities=20% Similarity=0.287 Sum_probs=196.8
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-CceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-DSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-~~~~lv 633 (833)
+.|+..+.||+|+||.||+|.. +|+.||||+++.. ...+.|.+|++++++++|||||++++++... +..++|
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv 93 (278)
T 1byg_A 21 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 93 (278)
T ss_dssp GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC------C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred hhceEEeEEecCCCceEEEEEE-cCCEEEEEEecch------hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEE
Confidence 4677889999999999999987 5899999999422 2356899999999999999999999997655 579999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 94 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~ 170 (278)
T 1byg_A 94 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 170 (278)
T ss_dssp ECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred EecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeecccccccccc
Confidence 99999999999998643334899999999999999999999 788999999999999999999999999998865432
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
. ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||....... ...... ... .....
T Consensus 171 ~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~-~~~~~~-~~~------~~~~~- 236 (278)
T 1byg_A 171 Q-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD-VVPRVE-KGY------KMDAP- 236 (278)
T ss_dssp ----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG-HHHHHT-TTC------CCCCC-
T ss_pred c-----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHh-cCC------CCCCc-
Confidence 2 23468899999999988889999999999999999998 999997543221 111111 100 00011
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
...+.++.+++.+||+.||++|||+.|+++.|++++
T Consensus 237 -----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~ 272 (278)
T 1byg_A 237 -----DGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK 272 (278)
T ss_dssp -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -----ccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence 122456789999999999999999999999998763
No 201
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=2.5e-41 Score=364.97 Aligned_cols=255 Identities=24% Similarity=0.285 Sum_probs=201.9
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceE--EEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSY--FIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~v--avK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~ 630 (833)
++|+..+.||+|+||.||+|... +|..+ |||++... ......+.+.+|+++++++ +|||||++++++..++..
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~---~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~ 101 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY---ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL 101 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccc---cchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCce
Confidence 46778899999999999999974 66654 99998422 1223456799999999999 899999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296 631 YLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL 696 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~ 696 (833)
++||||+++|+|.+++.... ...+++.+++.++.|+++||+||| +.+|+||||||+||+++.+
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~ 178 (327)
T 1fvr_A 102 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGEN 178 (327)
T ss_dssp EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGG
T ss_pred EEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCC
Confidence 99999999999999998642 236899999999999999999999 7899999999999999999
Q ss_pred CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHh
Q 003296 697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRN 775 (833)
Q Consensus 697 ~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~ 775 (833)
+.+||+|||+++...... ......+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... ......
T Consensus 179 ~~~kL~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~-~~~~~~ 254 (327)
T 1fvr_A 179 YVAKIADFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA-ELYEKL 254 (327)
T ss_dssp GCEEECCTTCEESSCEEC---CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHHG
T ss_pred CeEEEcccCcCccccccc---cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHH-HHHHHh
Confidence 999999999997432211 1133567889999999988889999999999999999998 99999754332 222111
Q ss_pred hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
..... .... ...+.++.+++.+||+.||++|||++|++++|+++
T Consensus 255 -~~~~~------~~~~------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 298 (327)
T 1fvr_A 255 -PQGYR------LEKP------LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 298 (327)
T ss_dssp -GGTCC------CCCC------TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -hcCCC------CCCC------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11100 0000 12234678999999999999999999999999864
No 202
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=7.9e-41 Score=363.66 Aligned_cols=264 Identities=19% Similarity=0.232 Sum_probs=208.8
Q ss_pred HHHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhc--CCCCCcccceEEEecCC
Q 003296 551 KAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK--LSNSNVMTPLAYVLASD 628 (833)
Q Consensus 551 ~~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~~~~~~~~~~ 628 (833)
....+.|...+.||+|+||.||+|+. +|+.||||++... ..+.+.+|++++.. ++|||||++++++...+
T Consensus 38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~ 109 (342)
T 1b6c_B 38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGFIAADNKDN 109 (342)
T ss_dssp HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG-------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC
T ss_pred ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch-------hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC
Confidence 35678899999999999999999998 6999999999421 23578899999987 78999999999998876
Q ss_pred ----ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----CCCeeecCCCccceeeCCCCCc
Q 003296 629 ----SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT-----SNPILLLDLSTRNIFLKSLKEP 699 (833)
Q Consensus 629 ----~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~-----~~~iiHrdlk~~Nill~~~~~~ 699 (833)
..++||||+++|+|.+++.+ ..++|.+++.++.|++.||+|||... +.+|+||||||+||+++.++.+
T Consensus 110 ~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~ 186 (342)
T 1b6c_B 110 GTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC 186 (342)
T ss_dssp SSCCCEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCE
T ss_pred CccceeEEEEeecCCCcHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCE
Confidence 78999999999999999975 35899999999999999999999421 4689999999999999999999
Q ss_pred eeccceeeeeeCCCCCCC--ccccccccccccccccccCC------cccccCcchhhHHHHHHHHhC----------CCc
Q 003296 700 QIGDIELCKVIDPSKSTG--SLSTVAGSVGYIPPEYAYTM------RVTMAGNVYSFGVILLELLTG----------KTA 761 (833)
Q Consensus 700 ki~dfgl~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg----------~~p 761 (833)
||+|||+++......... ......||+.|+|||++.+. .++.++|||||||++|||+|| +.|
T Consensus 187 kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p 266 (342)
T 1b6c_B 187 CIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP 266 (342)
T ss_dssp EECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCT
T ss_pred EEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccC
Confidence 999999998775433211 12346799999999998765 455799999999999999999 678
Q ss_pred ccCCc----cHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 762 VNQGN----ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 762 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
|.... ....+....... ...+.+... ......+..+.+++.+||+.||++|||++||+++|+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i 334 (342)
T 1b6c_B 267 YYDLVPSDPSVEEMRKVVCEQ------KLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 334 (342)
T ss_dssp TTTTSCSSCCHHHHHHHHTTS------CCCCCCCGG-GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred ccccCcCcccHHHHHHHHHHH------HhCCCCccc-ccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence 86432 122222211111 111111110 01124566788999999999999999999999999876
No 203
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=9.6e-42 Score=364.31 Aligned_cols=252 Identities=20% Similarity=0.230 Sum_probs=203.5
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
..+.|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++...+..+
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 82 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSP----AFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYY 82 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC----------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccc----ccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEE
Confidence 4567889999999999999999974 79999999995321 123457899999999999999999999999999999
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceeccceeee
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIELCK 708 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl~~ 708 (833)
+||||+++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+||++ +.++.+|++|||+++
T Consensus 83 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~ 157 (304)
T 2jam_A 83 LVMQLVSGGELFDRILE--RGVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSK 157 (304)
T ss_dssp EEECCCCSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTC
T ss_pred EEEEcCCCccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcce
Confidence 99999999999999875 346899999999999999999999 7799999999999999 788999999999987
Q ss_pred eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
..... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+..... .............
T Consensus 158 ~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~----- 227 (304)
T 2jam_A 158 MEQNG----IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESK-LFEKIKEGYYEFE----- 227 (304)
T ss_dssp CCCCB----TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHCCCCCC-----
T ss_pred ecCCC----ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHcCCCCCC-----
Confidence 54322 2244679999999999999899999999999999999999999997544322 1111111100000
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.......+.++.+++.+||+.||++|||+.|++++
T Consensus 228 -----~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (304)
T 2jam_A 228 -----SPFWDDISESAKDFICHLLEKDPNERYTCEKALSH 262 (304)
T ss_dssp -----TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred -----ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 00111234578899999999999999999999874
No 204
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=2.2e-41 Score=368.94 Aligned_cols=265 Identities=14% Similarity=0.189 Sum_probs=207.2
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccC--------------hhHHHHHHHHHhcCCCCCcccc
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGS--------------HHKFDKELEVLGKLSNSNVMTP 620 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~--------------~~~~~~E~~~l~~l~H~niv~~ 620 (833)
++|...+.||+|+||.||+|.. +|+.||||++... ....... .+.|.+|++++++++|||||++
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKS-LLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHH-HHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecc-cccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 4677889999999999999999 9999999999422 1111111 1789999999999999999999
Q ss_pred eEEEecCCceEEEEeeCCCCChhhh------hhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC-CCeeecCCCccceee
Q 003296 621 LAYVLASDSAYLFYEYAPKGTLFDV------LHGCLENALDWASRYSIAVGVAQGLAFLHGFTS-NPILLLDLSTRNIFL 693 (833)
Q Consensus 621 ~~~~~~~~~~~lv~ey~~~g~L~~~------l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~Nill 693 (833)
++++..++..++||||+++|+|.++ +.......+++..+..++.|++.||+||| + .+|+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence 9999999999999999999999999 66543567999999999999999999999 6 899999999999999
Q ss_pred CCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCC-cccc-cCcchhhHHHHHHHHhCCCcccCCccHHHH
Q 003296 694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTM-AGNVYSFGVILLELLTGKTAVNQGNELAKW 771 (833)
Q Consensus 694 ~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~ 771 (833)
+.++.+||+|||.++..... ......||+.|+|||++.+. .++. ++|||||||++|||++|+.||.........
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~ 261 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVEL 261 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHH
T ss_pred cCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH
Confidence 99999999999999876433 22456799999999999877 6766 999999999999999999999865543333
Q ss_pred HHHhhcccccccc----cccccccC-CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 772 VLRNSAQQDKLDH----ILDFNVSR-TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 772 ~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
............. ...+.... ........+.++.+++.+||+.||++|||+.|+++|
T Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h 323 (348)
T 2pml_X 262 FNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH 323 (348)
T ss_dssp HHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 2222211111100 00000000 000012234578899999999999999999999874
No 205
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=2.2e-41 Score=360.50 Aligned_cols=256 Identities=20% Similarity=0.277 Sum_probs=198.6
Q ss_pred hcCCccccccCcccEEEEEEcCC----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-CCce
Q 003296 556 VANPLNVELKTRFSTYYKAVMPS----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-SDSA 630 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-~~~~ 630 (833)
.|+..+.||+|+||.||+|+..+ +..||||++.... .....+.|.+|++++++++|||||+++++|.. ++..
T Consensus 26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 102 (298)
T 3f66_A 26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP 102 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred ehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC---CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCce
Confidence 46677899999999999998632 3468999985322 12234679999999999999999999999754 5678
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
++||||+++|+|.++++.. ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 103 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~ 178 (298)
T 3f66_A 103 LVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 178 (298)
T ss_dssp EEEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCC
T ss_pred EEEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccccc
Confidence 9999999999999999753 346899999999999999999999 789999999999999999999999999999866
Q ss_pred CCCCC--CCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccc
Q 003296 711 DPSKS--TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 711 ~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (833)
..... ........||+.|+|||++.+..++.++||||+||++|||++ |.+||........ ......... . ..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~-~~~~~~~~~---~-~~ 253 (298)
T 3f66_A 179 YDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI-TVYLLQGRR---L-LQ 253 (298)
T ss_dssp SCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTH-HHHHHTTCC---C-CC
T ss_pred cccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHH-HHHHhcCCC---C-CC
Confidence 43221 112234578899999999988899999999999999999999 5556654332211 111111100 0 00
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. ...+.++.+++.+||+.||++|||++|+++.|+++
T Consensus 254 ---~------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~ 289 (298)
T 3f66_A 254 ---P------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 289 (298)
T ss_dssp ---C------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ---C------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 0 01234678999999999999999999999999875
No 206
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.8e-41 Score=359.74 Aligned_cols=255 Identities=18% Similarity=0.206 Sum_probs=201.4
Q ss_pred hcCCcc-ccccCcccEEEEEEc---CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296 556 VANPLN-VELKTRFSTYYKAVM---PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631 (833)
Q Consensus 556 ~~~~~~-~ig~g~~g~vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~ 631 (833)
.|...+ .||+|+||.||+|.. .+++.||||++.... ......++|.+|++++++++||||+++++++ ..+..+
T Consensus 17 ~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 17 LLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA--NDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred hhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccc--cCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 455566 899999999999964 357899999995321 1222356899999999999999999999999 567789
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
+||||+++|+|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 94 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALR 168 (291)
T ss_dssp EEEECCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEeCCCCCHHHHHHh--CcCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence 99999999999999986 346899999999999999999999 7799999999999999999999999999998765
Q ss_pred CCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296 712 PSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN 789 (833)
Q Consensus 712 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (833)
...... ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+..... .... ...... ..
T Consensus 169 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~-~~~~-~~~~~~------~~ 240 (291)
T 1xbb_A 169 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-VTAM-LEKGER------MG 240 (291)
T ss_dssp TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-HHHH-HHTTCC------CC
T ss_pred cCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH-HHHH-HHcCCC------CC
Confidence 433211 1123457889999999988889999999999999999999 999997544322 1111 111110 00
Q ss_pred ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. ...+.++.+++.+||+.||++||++.||++.|+++
T Consensus 241 ~~------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 241 CP------AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp CC------TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11 12245688999999999999999999999999864
No 207
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.6e-40 Score=371.56 Aligned_cols=388 Identities=26% Similarity=0.289 Sum_probs=271.4
Q ss_pred CCCCCEEECCCCCCCCcc-cccCCCCCCEEECCCCCCCCcccccccCCCCC-------------CEEeCcCCcCCCCCCc
Q 003296 7 IDGLKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSL-------------KSLNLSKNKFNGFLPI 72 (833)
Q Consensus 7 l~~L~~L~ls~N~l~~i~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L-------------~~L~Ls~N~l~~~~p~ 72 (833)
.+.|+.|++++|.+..+| +|..+++|++|++++|++.+..|..|+.+.+| ++|++++|.++++++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~- 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE- 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-
Confidence 578999999999998897 59999999999999999999999999998875 999999999997543
Q ss_pred ccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCcc
Q 003296 73 NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL 152 (833)
Q Consensus 73 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 152 (833)
. .++|++|+|++|.+++ +|.. +++|+.|++++|+++++ |.. .++|++|+|++|.+++ +| .|+.+++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 2 4789999999999997 5653 47899999999999863 321 2799999999999997 66 69999999
Q ss_pred CccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccC
Q 003296 153 SRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIG 232 (833)
Q Consensus 153 ~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~ 232 (833)
+.|++++|++++ +|.. ...|++|++++|++.+ +| .+..+++|++|++++|.+++ +|. ..++|+.|++++|.+.
T Consensus 156 ~~L~l~~N~l~~-lp~~-~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~-~~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL-PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD-LPLSLESIVAGNNILE- 228 (454)
T ss_dssp CEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC-CCTTCCEEECCSSCCS-
T ss_pred CEEECCCCcCcc-cCCC-cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC-CcCcccEEECcCCcCC-
Confidence 999999999986 5543 3579999999999998 45 68999999999999999986 443 2368999999999876
Q ss_pred CCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhc
Q 003296 233 EIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFS 312 (833)
Q Consensus 233 ~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 312 (833)
.+| .|..+++|++|++++|++++. |. .+++|+.|++++|++.+ +|.. .++|+.|++++|.+++.. .
T Consensus 229 ~lp--~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~--- 294 (454)
T 1jl5_A 229 ELP--ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E--- 294 (454)
T ss_dssp SCC--CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C---
T ss_pred ccc--ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C---
Confidence 466 388999999999999999864 43 24789999999999986 4443 378999999999998732 1
Q ss_pred CCCcCceeeccCCcCcccCccccccC-CCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceee
Q 003296 313 QLKLLSTMNISWNSLSGSIPSFLSNL-TNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALN 391 (833)
Q Consensus 313 ~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~ 391 (833)
..++|++|++++|.+++. + .+ ++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .....+.|+
T Consensus 295 ~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-~l~~L~~L~ 363 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-LPQNLKQLH 363 (454)
T ss_dssp CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-CCTTCCEEE
T ss_pred cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-hhhhccEEE
Confidence 126789999999998852 2 23 589999999999986 5543 5789999999999884 555 233346788
Q ss_pred cccccccc--chhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccc--cCCC
Q 003296 392 LSSNLFEG--PIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSG--VVPK 451 (833)
Q Consensus 392 Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~--~~p~ 451 (833)
+++|.+++ .+|.++..+ +.|++.+.+|.. +++|+.|++++|++++ .+|.
T Consensus 364 L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEE--------ECCC---------------------------------
T ss_pred CCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence 88888888 677665543 345555555542 3667777777777776 4443
No 208
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=2.5e-41 Score=360.26 Aligned_cols=265 Identities=17% Similarity=0.230 Sum_probs=205.0
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|+.. +|+.||||++.... ......+.+.+|++++++++||||+++++++..++..++|
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 80 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDT--ETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV 80 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCc--cchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEE
Confidence 35778899999999999999975 79999999994322 1223457899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||++ |+|.+++.......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+|++|||+++.....
T Consensus 81 ~e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~ 156 (299)
T 2r3i_A 81 FEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP 156 (299)
T ss_dssp EECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCC
T ss_pred EEccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCC
Confidence 99997 69999998755567899999999999999999999 779999999999999999999999999999876432
Q ss_pred CCCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc------
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL------ 786 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~------ 786 (833)
.. ......||+.|+|||++.+.. ++.++|||||||++|||+||+.||.+.............. .......
T Consensus 157 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 233 (299)
T 2r3i_A 157 VR--TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTL-GTPDEVVWPGVTS 233 (299)
T ss_dssp SB--CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH-CCCCTTTSTTGGG
T ss_pred cc--ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCCchhhhhHhhc
Confidence 21 223457899999999987765 7899999999999999999999998665443322211110 0000000
Q ss_pred ----cccccCC---c--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 787 ----DFNVSRT---S--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 787 ----~~~~~~~---~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.+..... . ......+.++.+++.+||+.||++|||+.|+++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~h 284 (299)
T 2r3i_A 234 MPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH 284 (299)
T ss_dssp STTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 0000000 0 0001234578899999999999999999999874
No 209
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=1.7e-41 Score=358.05 Aligned_cols=255 Identities=19% Similarity=0.263 Sum_probs=200.2
Q ss_pred HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
++|...+.||+|+||.||+|+.. ++..||||++..... ....+.|.+|++++++++||||+++++++.+ +..
T Consensus 12 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~ 87 (281)
T 3cc6_A 12 EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCT---LDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPT 87 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSC---HHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSC
T ss_pred cceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccC---chHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCC
Confidence 46778899999999999999853 234699999953211 1235689999999999999999999999864 557
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
++||||+++|+|.+++... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+|++|||+++..
T Consensus 88 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 163 (281)
T 3cc6_A 88 WIIMELYPYGELGHYLERN-KNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYI 163 (281)
T ss_dssp EEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC
T ss_pred EEEEecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCccc
Confidence 9999999999999999753 345899999999999999999999 789999999999999999999999999999866
Q ss_pred CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN 789 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (833)
...... ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.......... .. ...... .
T Consensus 164 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~-~~-~~~~~~------~ 234 (281)
T 3cc6_A 164 EDEDYY-KASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIG-VL-EKGDRL------P 234 (281)
T ss_dssp ----------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHH-HH-HHTCCC------C
T ss_pred cccccc-ccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHH-HH-hcCCCC------C
Confidence 433211 2234567899999999988889999999999999999998 999997433221111 10 000000 0
Q ss_pred ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.. ...+..+.+++.+||+.||++|||+.|++++|+++
T Consensus 235 ~~------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~ 271 (281)
T 3cc6_A 235 KP------DLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDV 271 (281)
T ss_dssp CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CC------CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHH
Confidence 00 01234678999999999999999999999999875
No 210
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=394.32 Aligned_cols=249 Identities=18% Similarity=0.231 Sum_probs=197.2
Q ss_pred ccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296 562 VELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP 638 (833)
Q Consensus 562 ~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~ 638 (833)
.||+|+||.||+|... ++..||||+++.. ......++|.+|+++|++++|||||+++++|.. +..++|||||+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~---~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~ 418 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG---TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAG 418 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCC---CSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCC---CChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCC
Confidence 6999999999999863 5678999999532 122346789999999999999999999999976 56999999999
Q ss_pred CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCC-
Q 003296 639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG- 717 (833)
Q Consensus 639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~- 717 (833)
+|+|.+++... ...+++.++..++.|+++||+||| +.+||||||||+|||++.++.+||+|||+++.........
T Consensus 419 ~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~ 494 (613)
T 2ozo_A 419 GGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYT 494 (613)
T ss_dssp TCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-------
T ss_pred CCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceee
Confidence 99999999753 346999999999999999999999 7899999999999999999999999999998764322111
Q ss_pred ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchh
Q 003296 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA 796 (833)
Q Consensus 718 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (833)
......+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+....... . ........ ...
T Consensus 495 ~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~-~-~i~~~~~~------~~p----- 561 (613)
T 2ozo_A 495 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVM-A-FIEQGKRM------ECP----- 561 (613)
T ss_dssp -------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHH-H-HHHTTCCC------CCC-----
T ss_pred eccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-H-HHHcCCCC------CCC-----
Confidence 1123456789999999998899999999999999999998 99999865443211 1 11111110 000
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 797 VRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 797 ~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+.++.+++.+||+.||++||++.||++.|+.+
T Consensus 562 -~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 596 (613)
T 2ozo_A 562 -PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596 (613)
T ss_dssp -TTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred -CcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 12345788999999999999999999999999864
No 211
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-41 Score=369.54 Aligned_cols=269 Identities=19% Similarity=0.214 Sum_probs=201.0
Q ss_pred HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhh-hccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIF-QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
..+.|+..+.||+|+||.||+|+.. +|+.||||++....... .....+.+.+|++++++++|||||+++++|...+..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 3467888999999999999999974 79999999995322111 122245789999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
++||||+++ +|.+++... ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 88 ~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~ 162 (346)
T 1ua2_A 88 SLVFDFMET-DLEVIIKDN-SLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSF 162 (346)
T ss_dssp EEEEECCSE-EHHHHHTTC-CSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred EEEEEcCCC-CHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccceec
Confidence 999999986 899988753 346889999999999999999999 788999999999999999999999999999866
Q ss_pred CCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc----ccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD----KLDHI 785 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~----~~~~~ 785 (833)
..... .....+||+.|+|||++.+. .++.++|||||||++|||++|.+||.+................ .....
T Consensus 163 ~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 240 (346)
T 1ua2_A 163 GSPNR--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDM 240 (346)
T ss_dssp TSCCC--CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSST
T ss_pred cCCcc--cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhh
Confidence 43221 22456899999999998754 5899999999999999999999999866544332221111000 00000
Q ss_pred ------cccc-ccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 786 ------LDFN-VSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 786 ------~~~~-~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
+... ..... ......+.++.+++.+||+.||++|||++|+++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 241 CSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp TSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred ccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 0000 00000 0011234578899999999999999999999875
No 212
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=5.4e-41 Score=358.32 Aligned_cols=249 Identities=18% Similarity=0.293 Sum_probs=205.6
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|+..+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|++++++++||||+++++++..++..++|
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 98 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE---AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWII 98 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTT---CSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccc---cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEE
Confidence 4577889999999999999986 579999999995321 123457899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++.. ..+++..+..++.|++.||+||| ..+|+||||||+||+++.++.+||+|||+++.....
T Consensus 99 ~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 172 (303)
T 3a7i_A 99 MEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT 172 (303)
T ss_dssp EECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTT
T ss_pred EEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCcc
Confidence 999999999999974 46899999999999999999999 778999999999999999999999999999876543
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||............ ... . . . ....
T Consensus 173 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~-~~~-~-~-~----~~~~- 241 (303)
T 3a7i_A 173 QI--KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLI-PKN-N-P-P----TLEG- 241 (303)
T ss_dssp BC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-HHS-C-C-C----CCCS-
T ss_pred cc--ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHh-hcC-C-C-C----CCcc-
Confidence 22 224567999999999999889999999999999999999999999754432211111 110 0 0 0 0111
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..+..+.+++.+||+.||++|||+.|++++
T Consensus 242 -----~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 242 -----NYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp -----SCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred -----ccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 123467899999999999999999999875
No 213
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=6.1e-42 Score=368.13 Aligned_cols=266 Identities=20% Similarity=0.253 Sum_probs=203.3
Q ss_pred hcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--C
Q 003296 556 VANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--D 628 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~ 628 (833)
.|+..+.||+|+||.||+|.. .+|+.||||++.... .....+.|.+|++++++++|||||++++++.+. .
T Consensus 32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (318)
T 3lxp_A 32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA---GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAA 108 (318)
T ss_dssp GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTT
T ss_pred HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc---ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCc
Confidence 347789999999999998864 278999999995321 122356799999999999999999999999874 5
Q ss_pred ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK 708 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~ 708 (833)
..++||||+++|+|.+++... .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~ 182 (318)
T 3lxp_A 109 SLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAK 182 (318)
T ss_dssp EEEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred eEEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCccccc
Confidence 689999999999999999853 4899999999999999999999 7889999999999999999999999999998
Q ss_pred eeCCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcc---cccccc
Q 003296 709 VIDPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ---QDKLDH 784 (833)
Q Consensus 709 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~---~~~~~~ 784 (833)
........ .......||+.|+|||++.+..++.++|||||||++|||+||+.||................ ......
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (318)
T 3lxp_A 183 AVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTE 262 (318)
T ss_dssp ECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred cccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHH
Confidence 87543321 11234568899999999998899999999999999999999999996422110000000000 000000
Q ss_pred cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.+....... .....+.++.+++.+||+.||++|||++|+++.|+++
T Consensus 263 ~~~~~~~~~--~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l 308 (318)
T 3lxp_A 263 LLERGERLP--RPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTV 308 (318)
T ss_dssp HHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHhcccCCC--CCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 011010000 0112345788999999999999999999999999875
No 214
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.2e-41 Score=366.64 Aligned_cols=258 Identities=21% Similarity=0.230 Sum_probs=199.1
Q ss_pred HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccch----hhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDK----IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~----~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~ 626 (833)
...+.|...+.||+|+||.||+|.. .+|+.||||++..... .........|.+|++++++++|||||++++++..
T Consensus 7 ~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 86 (322)
T 2ycf_A 7 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 86 (322)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred hhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC
Confidence 4567899999999999999999997 4789999999853221 1112234568999999999999999999999876
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---ceecc
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---PQIGD 703 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---~ki~d 703 (833)
++ .|+||||+++|+|.+++.. ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++. +||+|
T Consensus 87 ~~-~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~D 160 (322)
T 2ycf_A 87 ED-YYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITD 160 (322)
T ss_dssp SS-EEEEEECCTTEETHHHHST--TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred Cc-eEEEEecCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEcc
Confidence 55 8999999999999999875 456899999999999999999999 789999999999999987654 99999
Q ss_pred ceeeeeeCCCCCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc
Q 003296 704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD 780 (833)
Q Consensus 704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 780 (833)
||+++...... ......||+.|+|||++. ...++.++|||||||++|||++|+.||................
T Consensus 161 fg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~-- 235 (322)
T 2ycf_A 161 FGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG-- 235 (322)
T ss_dssp CTTCEECCCCH---HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHT--
T ss_pred Cccceeccccc---ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhC--
Confidence 99998764321 223567999999999863 5668999999999999999999999997533211111100000
Q ss_pred cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
. ...........+.++.+++.+||+.||++|||+.|++++
T Consensus 236 ~--------~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h 275 (322)
T 2ycf_A 236 K--------YNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH 275 (322)
T ss_dssp C--------CCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred c--------cccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence 0 000011112234578899999999999999999999864
No 215
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=5e-42 Score=371.12 Aligned_cols=265 Identities=17% Similarity=0.224 Sum_probs=201.1
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|+..+.||+|+||.||+|+.. +|+.||||++..... .....+.+.+|++++++++|||||+++++|...+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 102 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD--DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV 102 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC--chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence 46778899999999999999975 699999999843221 112245688999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++++|.++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 103 ~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 177 (331)
T 4aaa_A 103 FEFVDHTILDDLELF--PNGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP 177 (331)
T ss_dssp EECCSEEHHHHHHHS--TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred EecCCcchHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence 999999999988764 346999999999999999999999 789999999999999999999999999999876433
Q ss_pred CCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc-------------
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ------------- 779 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~------------- 779 (833)
.. ......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+...............
T Consensus 178 ~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (331)
T 4aaa_A 178 GE--VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKN 255 (331)
T ss_dssp --------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHC
T ss_pred cc--ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhc
Confidence 22 22456799999999998765 689999999999999999999999986554332221111000
Q ss_pred ccccccccccccCCch---hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 780 DKLDHILDFNVSRTSL---AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 780 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
........+....... .....+.++.+++.+||+.||++|||++|+++|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 256 PVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp GGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred cccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 0000010111110000 011235678899999999999999999999875
No 216
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=3.9e-41 Score=354.31 Aligned_cols=250 Identities=18% Similarity=0.234 Sum_probs=196.4
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|...+.||+|+||.||+|+.. +|+.||||++.. .........+.+.+|++++++++||||+++++++..++..++|
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNR-QKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH-HHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEecc-ccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 35777889999999999999975 799999999942 2222334567899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.+++.. ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+|++|||++......
T Consensus 90 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~ 164 (276)
T 2h6d_A 90 MEYVSGGELFDYICK--HGRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 164 (276)
T ss_dssp EECCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred EeccCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence 999999999999976 346899999999999999999999 778999999999999999999999999999876433
Q ss_pred CCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (833)
. ......||+.|+|||++.+..+ +.++|||||||++|||++|+.||...... ............ .+.
T Consensus 165 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~--------~~~ 232 (276)
T 2h6d_A 165 E---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP-TLFKKIRGGVFY--------IPE 232 (276)
T ss_dssp ---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCCC--------CCT
T ss_pred c---ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH-HHHHHhhcCccc--------Cch
Confidence 2 1234679999999999987765 68999999999999999999999754322 211111111000 000
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....++.+++.+||+.||++|||+.|++++
T Consensus 233 ------~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 233 ------YLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp ------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred ------hcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 123467789999999999999999999986
No 217
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=1.8e-41 Score=395.77 Aligned_cols=250 Identities=18% Similarity=0.216 Sum_probs=197.3
Q ss_pred cccccCcccEEEEEEc---CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeC
Q 003296 561 NVELKTRFSTYYKAVM---PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA 637 (833)
Q Consensus 561 ~~ig~g~~g~vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~ 637 (833)
+.||+|+||.||+|.+ .+++.||||+++.. .......++|.+|+++|++++|||||+++++|.. +..++|||||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~--~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~ 451 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNE--ANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMA 451 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGG--GGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccc--cCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEcc
Confidence 4799999999999965 35688999999532 1222345789999999999999999999999964 5689999999
Q ss_pred CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC-
Q 003296 638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST- 716 (833)
Q Consensus 638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~- 716 (833)
++|+|.++++. ...+++.++..|+.||+.||+||| +.+||||||||+|||++.++.+||+|||+++........
T Consensus 452 ~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~ 526 (635)
T 4fl3_A 452 ELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 526 (635)
T ss_dssp TTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-----
T ss_pred CCCCHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccc
Confidence 99999999986 456899999999999999999999 788999999999999999999999999999876433221
Q ss_pred CccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL 795 (833)
Q Consensus 717 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (833)
.......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+..... ... ........ ...
T Consensus 527 ~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~-~~~-~i~~~~~~------~~p---- 594 (635)
T 4fl3_A 527 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-VTA-MLEKGERM------GCP---- 594 (635)
T ss_dssp --------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-HHH-HHHTTCCC------CCC----
T ss_pred ccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH-HHH-HHHcCCCC------CCC----
Confidence 12234567899999999998899999999999999999998 999997644322 111 11111110 001
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+.++.+++.+||+.||++|||+.||++.|+++
T Consensus 595 --~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 595 --AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp --TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 12345788999999999999999999999999864
No 218
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=5.2e-42 Score=393.95 Aligned_cols=254 Identities=21% Similarity=0.275 Sum_probs=206.2
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
+.|+..+.||+|+||.||+|.+.++..||||+++... ...++|.+|+++|++++|||||+++++|.+ +..|+||
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~ 340 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT 340 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-----CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEee
Confidence 4577788999999999999999888889999995221 235789999999999999999999999876 7789999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
|||++|+|.++++......+++.++..|+.|+++||+||| +.+||||||||+|||+++++.+||+|||+++......
T Consensus 341 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 417 (535)
T 2h8h_A 341 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 417 (535)
T ss_dssp CCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH
T ss_pred ehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc
Confidence 9999999999997533346899999999999999999999 7889999999999999999999999999998654221
Q ss_pred CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
.. ......+|..|+|||++.+..++.++|||||||++|||+| |+.||.+.... +.... ....... ...
T Consensus 418 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~-~~~~~-i~~~~~~------~~~-- 486 (535)
T 2h8h_A 418 YT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-EVLDQ-VERGYRM------PCP-- 486 (535)
T ss_dssp HH-TTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH-HHHHH-HHTTCCC------CCC--
T ss_pred ee-cccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHH-HHcCCCC------CCC--
Confidence 11 1123457889999999988899999999999999999999 99999754332 21111 1111110 000
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+.++.+++.+||+.||++|||++||+++|+++
T Consensus 487 ----~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~ 521 (535)
T 2h8h_A 487 ----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 521 (535)
T ss_dssp ----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred ----CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 12244678999999999999999999999999875
No 219
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=4.1e-41 Score=367.18 Aligned_cols=267 Identities=17% Similarity=0.233 Sum_probs=203.3
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------ 627 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------ 627 (833)
+.|+..+.||+|+||.||+|+. .+|+.||||++.... ........+.+|++++++++|||||++++++...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 94 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMEN--EKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR 94 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSS--CSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEeccc--ccccchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence 4688889999999999999997 589999999984322 2233456789999999999999999999999873
Q ss_pred --CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296 628 --DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE 705 (833)
Q Consensus 628 --~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg 705 (833)
+..|+||||+++ +|.+.+... ...+++.++..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||
T Consensus 95 ~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 169 (351)
T 3mi9_A 95 CKGSIYLVFDFCEH-DLAGLLSNV-LVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFG 169 (351)
T ss_dssp --CEEEEEEECCSE-EHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CCceEEEEEeccCC-CHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccch
Confidence 468999999975 888887653 345999999999999999999999 7899999999999999999999999999
Q ss_pred eeeeeCCCCC--CCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296 706 LCKVIDPSKS--TGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL 782 (833)
Q Consensus 706 l~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 782 (833)
+++....... ........||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+..................
T Consensus 170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~ 249 (351)
T 3mi9_A 170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT 249 (351)
T ss_dssp TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCC
Confidence 9987653221 112345689999999998876 4589999999999999999999999986554332221111110000
Q ss_pred ccc---cc-ccc-------cCCchhHHH------HHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 783 DHI---LD-FNV-------SRTSLAVRS------QMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 783 ~~~---~~-~~~-------~~~~~~~~~------~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
... .+ ... ......... ...++.+++.+||+.||++|||++|+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 312 (351)
T 3mi9_A 250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 312 (351)
T ss_dssp TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence 000 00 000 000000011 13468899999999999999999999875
No 220
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=3.6e-41 Score=358.41 Aligned_cols=260 Identities=13% Similarity=0.137 Sum_probs=201.6
Q ss_pred HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEE-ecCCc
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV-LASDS 629 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~-~~~~~ 629 (833)
...+.|+..+.||+|+||.||+|+. .+|+.||||++.... ..+.+.+|++++++++|++++..++++ ...+.
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~ 79 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT------KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDY 79 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc------cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCc
Confidence 4567899999999999999999996 689999999874221 234689999999999999988887776 45677
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceecccee
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIEL 706 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl 706 (833)
.++||||+ +|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||++ ++++.+||+|||+
T Consensus 80 ~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~ 154 (296)
T 4hgt_A 80 NVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGL 154 (296)
T ss_dssp EEEEEECC-CCBHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTT
T ss_pred eEEEEEcc-CCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCcc
Confidence 89999999 99999999853 346999999999999999999999 7889999999999999 7889999999999
Q ss_pred eeeeCCCCCCC-----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH--HHHHHHhhccc
Q 003296 707 CKVIDPSKSTG-----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL--AKWVLRNSAQQ 779 (833)
Q Consensus 707 ~~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~--~~~~~~~~~~~ 779 (833)
++......... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.... .......
T Consensus 155 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~---- 230 (296)
T 4hgt_A 155 AKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERI---- 230 (296)
T ss_dssp CEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHH----
T ss_pred ceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhh----
Confidence 98775433211 123568999999999999989999999999999999999999999743211 0000000
Q ss_pred ccccccccccccCCc-hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 780 DKLDHILDFNVSRTS-LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 780 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
......... ......+.++.+++.+||+.||++|||++||++.|+++
T Consensus 231 ------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~ 278 (296)
T 4hgt_A 231 ------SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 278 (296)
T ss_dssp ------HHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred ------hcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 000000000 00011245788999999999999999999999999874
No 221
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=3.4e-42 Score=379.21 Aligned_cols=244 Identities=14% Similarity=0.141 Sum_probs=190.2
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHH---HHHhcCCCCCcccce-------EE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKEL---EVLGKLSNSNVMTPL-------AY 623 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~---~~l~~l~H~niv~~~-------~~ 623 (833)
+.|...+.||+|+||.||+|+. .+|+.||||++... ........+.|.+|+ +++++++|||||+++ ++
T Consensus 73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFT-ERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEEC-C-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred ceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeec-cccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 4567789999999999999997 57999999999522 122223457899999 566666899999998 66
Q ss_pred EecCC-----------------ceEEEEeeCCCCChhhhhhcCC-----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 003296 624 VLASD-----------------SAYLFYEYAPKGTLFDVLHGCL-----ENALDWASRYSIAVGVAQGLAFLHGFTSNPI 681 (833)
Q Consensus 624 ~~~~~-----------------~~~lv~ey~~~g~L~~~l~~~~-----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~i 681 (833)
+..++ ..|+||||+ +|+|.+++.... ...++|..+..|+.|+++||+||| +.+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence 66553 289999999 689999998521 113457889999999999999999 7789
Q ss_pred eecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCC-----------cccccCcchhhHH
Q 003296 682 LLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-----------RVTMAGNVYSFGV 750 (833)
Q Consensus 682 iHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~S~Gv 750 (833)
+||||||+|||++.++.+||+|||+++.... .....+| +.|+|||++.+. .++.++|||||||
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~ 301 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL 301 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHH
Confidence 9999999999999999999999999986432 2245678 999999999877 8999999999999
Q ss_pred HHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 751 ILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 751 vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
++|||+||+.||.+.... .....+... .. ..+.++.+++.+||+.||++|||+.|++++
T Consensus 302 il~elltg~~Pf~~~~~~-----------~~~~~~~~~-~~-------~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 360 (377)
T 3byv_A 302 VIYWIWCADLPITKDAAL-----------GGSEWIFRS-CK-------NIPQPVRALLEGFLRYPKEDRLLPLQAMET 360 (377)
T ss_dssp HHHHHHHSSCCC-----------------CCSGGGGSS-CC-------CCCHHHHHHHHHHTCSSGGGCCCHHHHHTS
T ss_pred HHHHHHHCCCCCcccccc-----------cchhhhhhh-cc-------CCCHHHHHHHHHHcCCCchhCCCHHHHhhC
Confidence 999999999999643211 111111110 01 123467899999999999999999999864
No 222
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.5e-41 Score=371.56 Aligned_cols=260 Identities=17% Similarity=0.198 Sum_probs=184.7
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------ 627 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------ 627 (833)
+.|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+.+|++++++++|||||++++++...
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF--QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc--cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 4678889999999999999996 579999999994321 1122356789999999999999999999999764
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
...|+||||+ +++|.++++. ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a 179 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLA 179 (367)
T ss_dssp CCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC----
T ss_pred CeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeecccc
Confidence 5689999999 6899999874 46999999999999999999999 789999999999999999999999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc----
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL---- 782 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---- 782 (833)
+..... ....+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..............+...
T Consensus 180 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~ 254 (367)
T 2fst_X 180 RHTADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELL 254 (367)
T ss_dssp ----------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHH
T ss_pred cccccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence 865422 245689999999999876 6789999999999999999999999986654433221111100000
Q ss_pred cccccc----------cccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 783 DHILDF----------NVSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 783 ~~~~~~----------~~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..+... ...... .........+.+++.+||+.||++|||+.|+++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 255 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp TTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 000000 000000 0001124568899999999999999999999875
No 223
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.3e-41 Score=375.49 Aligned_cols=261 Identities=16% Similarity=0.169 Sum_probs=198.2
Q ss_pred HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC----
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS---- 627 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~---- 627 (833)
....|...+.||+|+||.||+|.. .+|+.||||++... .+.+.+|+++|++++|||||+++++|...
T Consensus 5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~--------~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 76 (383)
T 3eb0_A 5 SSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQD--------PRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEE 76 (383)
T ss_dssp -CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECC--------TTSCCHHHHHHTTCCCTTBCCEEEEEEEC----
T ss_pred ccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecC--------cchHHHHHHHHHHcCCCCccchhheeeecCccc
Confidence 445788899999999999999996 58999999998422 12334799999999999999999999543
Q ss_pred ----------------------------------CceEEEEeeCCCCChhhhhhc--CCCCCCCHHHHHHHHHHHHHHHH
Q 003296 628 ----------------------------------DSAYLFYEYAPKGTLFDVLHG--CLENALDWASRYSIAVGVAQGLA 671 (833)
Q Consensus 628 ----------------------------------~~~~lv~ey~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~ 671 (833)
...++|||||+ |+|.+.+.. .....+++..+..++.|+++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~ 155 (383)
T 3eb0_A 77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVG 155 (383)
T ss_dssp ---------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33889999998 588887763 22457999999999999999999
Q ss_pred hhhcCCCCCeeecCCCccceeeC-CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhH
Q 003296 672 FLHGFTSNPILLLDLSTRNIFLK-SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFG 749 (833)
Q Consensus 672 ylH~~~~~~iiHrdlk~~Nill~-~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~G 749 (833)
||| +.+|+||||||+||+++ .++.+||+|||+|+....... .....||+.|+|||++.+. .++.++||||+|
T Consensus 156 ~LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG 229 (383)
T 3eb0_A 156 FIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYTPSIDLWSIG 229 (383)
T ss_dssp HHH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHH
T ss_pred HHH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCCcchhhhhHH
Confidence 999 78999999999999998 688999999999997654432 2456789999999988765 489999999999
Q ss_pred HHHHHHHhCCCcccCCccHHHHHHHhhccccc-----------ccccccccccCCch---hHHHHHHHHHHHHHhccCCC
Q 003296 750 VILLELLTGKTAVNQGNELAKWVLRNSAQQDK-----------LDHILDFNVSRTSL---AVRSQMLTVLKVAVACVSVS 815 (833)
Q Consensus 750 vvl~elltg~~p~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~cl~~d 815 (833)
|++|||++|+.||.+......+.......+.. .....-+....... .....+.++.+++.+||+.|
T Consensus 230 ~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d 309 (383)
T 3eb0_A 230 CVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYE 309 (383)
T ss_dssp HHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSS
T ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCC
Confidence 99999999999998765544333221111000 00000000000000 00113456889999999999
Q ss_pred CCCCCCHHHHHHH
Q 003296 816 PEARPKMKSVLRM 828 (833)
Q Consensus 816 P~~Rps~~evl~~ 828 (833)
|++|||+.|+++|
T Consensus 310 P~~R~t~~e~l~h 322 (383)
T 3eb0_A 310 PDLRINPYEAMAH 322 (383)
T ss_dssp GGGSCCHHHHHTS
T ss_pred hhhCCCHHHHhcC
Confidence 9999999999865
No 224
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=1.8e-41 Score=359.22 Aligned_cols=249 Identities=16% Similarity=0.230 Sum_probs=200.8
Q ss_pred HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCc
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDS 629 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~ 629 (833)
...+.|+..+.||+|+||.||+|+.. +|+.||||++..... ......++.+|+.++.++ +|||||++++++.+++.
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~ 85 (289)
T 1x8b_A 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLA--GSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDH 85 (289)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCT--TSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTE
T ss_pred cccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccc--ccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCe
Confidence 45678999999999999999999975 899999999853211 122356789999999999 99999999999999999
Q ss_pred eEEEEeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-----------
Q 003296 630 AYLFYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL----------- 696 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~----------- 696 (833)
.++||||+++|+|.+++.... ...+++.++..++.|+++||+||| +.+|+||||||+||+++.+
T Consensus 86 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~ 162 (289)
T 1x8b_A 86 MLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGD 162 (289)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC-------------
T ss_pred EEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCcccccccc
Confidence 999999999999999997532 246899999999999999999999 7899999999999999844
Q ss_pred --------CCceeccceeeeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296 697 --------KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNE 767 (833)
Q Consensus 697 --------~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~ 767 (833)
..+|++|||.++...... ...||+.|+|||++.+. .++.++|||||||++|||++|++|+.....
T Consensus 163 ~~~~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~ 236 (289)
T 1x8b_A 163 EDDWASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQ 236 (289)
T ss_dssp -------CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHH
T ss_pred cccccCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhH
Confidence 478999999998764322 34699999999998765 567899999999999999999988754332
Q ss_pred HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 768 LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..... . .... .... ..+.++.+++.+||+.||++|||+.|+++|
T Consensus 237 ~~~~~---~---~~~~-----~~~~------~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 237 WHEIR---Q---GRLP-----RIPQ------VLSQEFTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp HHHHH---T---TCCC-----CCSS------CCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred HHHHH---c---CCCC-----CCCc------ccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence 21111 0 1110 1111 123467899999999999999999999875
No 225
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=8.1e-41 Score=361.64 Aligned_cols=256 Identities=15% Similarity=0.171 Sum_probs=201.1
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEec--CCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLA--SDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~--~~~~ 630 (833)
++|+..+.||+|+||.||+|+. .+|+.||||+++. ...+.+.+|++++++++ ||||+++++++.. ....
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-------~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~ 108 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP-------VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP 108 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS-------CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc-------cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCce
Confidence 5688889999999999999986 5899999999942 23467999999999997 9999999999987 5678
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-Cceeccceeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIELCKV 709 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl~~~ 709 (833)
++||||+++|+|.+++.. +++.++..++.|++.||+||| +.+|+||||||+|||++.++ .+||+|||+++.
T Consensus 109 ~lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~ 180 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEF 180 (330)
T ss_dssp EEEEECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEEEeccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceE
Confidence 999999999999999864 889999999999999999999 78899999999999999776 899999999987
Q ss_pred eCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc--cccccc-
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ--DKLDHI- 785 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~--~~~~~~- 785 (833)
...... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||..+.............. ......
T Consensus 181 ~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~ 257 (330)
T 3nsz_A 181 YHPGQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYI 257 (330)
T ss_dssp CCTTCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCCCCc---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHH
Confidence 654332 245689999999999876 6689999999999999999999999965443322211110000 000000
Q ss_pred ------cccc--------cc------CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 786 ------LDFN--------VS------RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 786 ------~~~~--------~~------~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.++. .. ...........++.+++.+||+.||++|||++|+++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h 320 (330)
T 3nsz_A 258 DKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH 320 (330)
T ss_dssp HHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred HHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 0000 00 0000011235678899999999999999999999975
No 226
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.6e-41 Score=358.73 Aligned_cols=254 Identities=17% Similarity=0.272 Sum_probs=202.0
Q ss_pred HHHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 551 KAMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 551 ~~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
+...+.|+..+.||+|+||.||+|... +|+.||||++... ...+.+.+|++++++++||||+++++++...+.
T Consensus 25 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~ 98 (314)
T 3com_A 25 KQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE------SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTD 98 (314)
T ss_dssp -----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT------SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTE
T ss_pred hcchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch------HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCE
Confidence 355677889999999999999999975 6999999999422 235789999999999999999999999999999
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
.++||||+++|+|.+++... ...+++.++..++.|++.||.||| ..+|+||||||+||+++.++.+||+|||++..
T Consensus 99 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 174 (314)
T 3com_A 99 LWIVMEYCGAGSVSDIIRLR-NKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQ 174 (314)
T ss_dssp EEEEEECCTTEEHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEeecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchh
Confidence 99999999999999999732 346899999999999999999999 78899999999999999999999999999987
Q ss_pred eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN 789 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (833)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.................. .
T Consensus 175 ~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--------~ 244 (314)
T 3com_A 175 LTDTMA--KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPP--------T 244 (314)
T ss_dssp CBTTBS--CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCC--------C
T ss_pred hhhhcc--ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCc--------c
Confidence 653321 224567999999999999889999999999999999999999999765443322211111100 0
Q ss_pred ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
... ....+.++.+++.+||+.||++|||+.|++++
T Consensus 245 ~~~----~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~ 279 (314)
T 3com_A 245 FRK----PELWSDNFTDFVKQCLVKSPEQRATATQLLQH 279 (314)
T ss_dssp CSS----GGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred cCC----cccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 000 11123467899999999999999999999864
No 227
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=6.9e-41 Score=375.07 Aligned_cols=200 Identities=21% Similarity=0.224 Sum_probs=166.0
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~ 628 (833)
+.|...+.||+|+||.||+|+. .+|+.||||++.... ......+.+.+|+++|++++|||||++++++... +
T Consensus 26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF--EDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT--TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh--cChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 5688889999999999999997 478999999995221 1222356899999999999999999999999876 5
Q ss_pred ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK 708 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~ 708 (833)
..|+||||++ |+|.++++. ...+++..+..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+|+
T Consensus 104 ~~~lv~e~~~-~~L~~~~~~--~~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~ 177 (432)
T 3n9x_A 104 ELYIVLEIAD-SDLKKLFKT--PIFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLAR 177 (432)
T ss_dssp CEEEEEECCS-EEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred eEEEEEecCC-cCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcc
Confidence 6899999996 599999986 456999999999999999999999 7789999999999999999999999999998
Q ss_pred eeCCCCCC--------------------Cccccccccccccccccc-cCCcccccCcchhhHHHHHHHHhCCCcc
Q 003296 709 VIDPSKST--------------------GSLSTVAGSVGYIPPEYA-YTMRVTMAGNVYSFGVILLELLTGKTAV 762 (833)
Q Consensus 709 ~~~~~~~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~S~Gvvl~elltg~~p~ 762 (833)
........ ......+||+.|+|||++ ....|+.++||||+||++|||++|..||
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 178 TINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp EC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence 76533211 123567899999999986 4566999999999999999999854444
No 228
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=364.50 Aligned_cols=256 Identities=18% Similarity=0.256 Sum_probs=200.7
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----CCc
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----SDS 629 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----~~~ 629 (833)
+.|+..+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|++++++++|||||++++++.. ...
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE----QQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE 104 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS----HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC----HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCce
Confidence 4688889999999999999997 589999999984321 1235679999999999999999999999973 347
Q ss_pred eEEEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 630 AYLFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
.++||||+++|+|.+++... ....+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+|++|||++
T Consensus 105 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~ 181 (317)
T 2buj_A 105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSM 181 (317)
T ss_dssp EEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred eEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence 89999999999999998752 2356999999999999999999999 779999999999999999999999999998
Q ss_pred eeeCCCCCCC-------ccccccccccccccccccCCc---ccccCcchhhHHHHHHHHhCCCcccC----CccHHHHHH
Q 003296 708 KVIDPSKSTG-------SLSTVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGKTAVNQ----GNELAKWVL 773 (833)
Q Consensus 708 ~~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvvl~elltg~~p~~~----~~~~~~~~~ 773 (833)
+......... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||.. .........
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~ 261 (317)
T 2buj_A 182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ 261 (317)
T ss_dssp EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHH
T ss_pred hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhh
Confidence 7653211100 012346899999999987543 78999999999999999999999952 111111110
Q ss_pred HhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
.... ... ....+.++.+++.+||+.||++|||+.|++++|++++
T Consensus 262 ----~~~~--------~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~ 305 (317)
T 2buj_A 262 ----NQLS--------IPQ----SPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ 305 (317)
T ss_dssp ----CC----------CCC----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred ----ccCC--------CCc----cccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence 0000 000 0122346889999999999999999999999998864
No 229
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=1.3e-41 Score=363.17 Aligned_cols=262 Identities=20% Similarity=0.282 Sum_probs=186.7
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
+.|+..+.||+|+||.||+|.. .+|+.||||++.... .....+++.+|++++++++||||+++++++..++..++|
T Consensus 15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (303)
T 2vwi_A 15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEK---CQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV 91 (303)
T ss_dssp CCCEEEEECC---CCCEEEEEC----CEEEEECCC-------------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred hhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhh---cchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence 4577789999999999999997 478999999984221 123356789999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcC------CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 634 YEYAPKGTLFDVLHGC------LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~------~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
|||+++|+|.+++... ....+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~ 168 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVS 168 (303)
T ss_dssp EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence 9999999999998731 2346899999999999999999999 778999999999999999999999999998
Q ss_pred eeeCCCCC---CCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc
Q 003296 708 KVIDPSKS---TGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD 783 (833)
Q Consensus 708 ~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 783 (833)
+....... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....................
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 248 (303)
T 2vwi_A 169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLE 248 (303)
T ss_dssp HHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTT
T ss_pred heeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccc
Confidence 76543221 111234679999999998865 46899999999999999999999999865443332222111111111
Q ss_pred c-cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 784 H-ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 784 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
. ..+.... ...+.++.+++.+||+.||++|||+.|++++
T Consensus 249 ~~~~~~~~~------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 288 (303)
T 2vwi_A 249 TGVQDKEML------KKYGKSFRKMISLCLQKDPEKRPTAAELLRH 288 (303)
T ss_dssp C-----CCC------CCCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred cccccchhh------hhhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 1 0111111 1123467899999999999999999999874
No 230
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=364.84 Aligned_cols=267 Identities=22% Similarity=0.291 Sum_probs=205.4
Q ss_pred HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD- 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~- 628 (833)
..|+..+.||+|+||.||+|.. .+|+.||||++.... ....+.|.+|++++++++|||||++++++...+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 116 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST----EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 116 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC----SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC---
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCC
Confidence 4577889999999999999983 478999999995321 223467999999999999999999999987654
Q ss_pred -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
..++||||+++|+|.+++... ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~ 192 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLT 192 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHS-TTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred CceEEEEECCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcch
Confidence 789999999999999999864 345899999999999999999999 789999999999999999999999999999
Q ss_pred eeeCCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc------
Q 003296 708 KVIDPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD------ 780 (833)
Q Consensus 708 ~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~------ 780 (833)
+......... ......||..|+|||++.+..++.++|||||||++|||+||+.|+.... ..+.........
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~--~~~~~~~~~~~~~~~~~~ 270 (326)
T 2w1i_A 193 KVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP--AEFMRMIGNDKQGQMIVF 270 (326)
T ss_dssp EECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH--HHHHHHHCTTCCTHHHHH
T ss_pred hhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCH--HHHHHhhccccchhhhHH
Confidence 8775432211 1123567888999999988889999999999999999999999986321 111100000000
Q ss_pred cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
.+.+.+....... .....+.++.+++.+||+.||++|||+.|+++.|+++|
T Consensus 271 ~~~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~ 321 (326)
T 2w1i_A 271 HLIELLKNNGRLP--RPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 321 (326)
T ss_dssp HHHHHHHTTCCCC--CCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCC--CCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 0000000000000 01123457889999999999999999999999999864
No 231
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=9.8e-41 Score=355.07 Aligned_cols=258 Identities=13% Similarity=0.135 Sum_probs=203.5
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEE-ecCCceE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV-LASDSAY 631 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~-~~~~~~~ 631 (833)
.+.|+..+.||+|+||.||+|+. .+|+.||||++... ...+++.+|++++++++|++++..++++ ...+..+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK------TKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESC------SSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCC------cchhHHHHHHHHHHHhhcCCCCCccccccCCCCceE
Confidence 35678889999999999999996 68999999998422 1235799999999999999988777766 4567789
Q ss_pred EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceeccceeee
Q 003296 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIELCK 708 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl~~ 708 (833)
+||||+ +|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||++ ++++.+||+|||+++
T Consensus 82 lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~ 156 (296)
T 3uzp_A 82 MVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK 156 (296)
T ss_dssp EEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred EEEEec-CCCHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcc
Confidence 999999 89999999743 346999999999999999999999 7899999999999999 488899999999998
Q ss_pred eeCCCCCCC-----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH--HHHHHHhhccccc
Q 003296 709 VIDPSKSTG-----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL--AKWVLRNSAQQDK 781 (833)
Q Consensus 709 ~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~--~~~~~~~~~~~~~ 781 (833)
......... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.... .+.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~------ 230 (296)
T 3uzp_A 157 KYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERI------ 230 (296)
T ss_dssp ECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHH------
T ss_pred cccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhh------
Confidence 775433211 124568999999999999989999999999999999999999999743211 0000000
Q ss_pred ccccccccccCCc-hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 782 LDHILDFNVSRTS-LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 782 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
......... ......+.++.+++.+||+.||++|||++||++.|+++
T Consensus 231 ----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 278 (296)
T 3uzp_A 231 ----SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 278 (296)
T ss_dssp ----HHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred ----cccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHH
Confidence 000000000 00012245788999999999999999999999999875
No 232
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=2.1e-41 Score=377.62 Aligned_cols=258 Identities=19% Similarity=0.180 Sum_probs=195.1
Q ss_pred hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------C
Q 003296 556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------D 628 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------~ 628 (833)
.|+..+.||+|+||.||+|+.. +|+.||||++... .+.+.+|+++|++++|||||+++++|... .
T Consensus 55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~--------~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~ 126 (420)
T 1j1b_A 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV 126 (420)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC--------TTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEE
T ss_pred eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc--------chhHHHHHHHHHHcCCCCccceeeEEeccCCCCcce
Confidence 4777899999999999999974 7999999998421 12345799999999999999999998642 2
Q ss_pred ceEEEEeeCCCCChhhhhhc--CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-CCceeccce
Q 003296 629 SAYLFYEYAPKGTLFDVLHG--CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-KEPQIGDIE 705 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-~~~ki~dfg 705 (833)
..++||||+++ ++.+.+.. .....+++..+..++.|+++||+||| +.+|+||||||+|||++.+ +.+||+|||
T Consensus 127 ~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG 202 (420)
T 1j1b_A 127 YLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFG 202 (420)
T ss_dssp EEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred eEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccch
Confidence 36799999986 67666542 12456999999999999999999999 7899999999999999965 568999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc----
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD---- 780 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~---- 780 (833)
+++....... ....+||+.|+|||++.+. .|+.++|||||||++|||++|+.||.+..............+.
T Consensus 203 ~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~ 279 (420)
T 1j1b_A 203 SAKQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTRE 279 (420)
T ss_dssp TCEECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHH
T ss_pred hhhhcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHH
Confidence 9997654332 2356899999999998764 6999999999999999999999999876544333222111000
Q ss_pred -------cccccccccccCCchh---HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 781 -------KLDHILDFNVSRTSLA---VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 781 -------~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
......-+.+...... ......++.+++.+||+.||++|||+.|+++|
T Consensus 280 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h 337 (420)
T 1j1b_A 280 QIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH 337 (420)
T ss_dssp HHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence 0000000111100000 01224578899999999999999999999875
No 233
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=5.5e-41 Score=356.82 Aligned_cols=251 Identities=18% Similarity=0.233 Sum_probs=197.8
Q ss_pred cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296 557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE 635 (833)
Q Consensus 557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e 635 (833)
|....+||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++|||||++++++...+..++|||
T Consensus 24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 99 (295)
T 2clq_A 24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD----SRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFME 99 (295)
T ss_dssp TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC----C---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc----hHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEE
Confidence 34456899999999999996 578999999985321 2345789999999999999999999999999999999999
Q ss_pred eCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCceeccceeeeeeCCC
Q 003296 636 YAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 636 y~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~ki~dfgl~~~~~~~ 713 (833)
|+++|+|.+++..... ..+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+++.....
T Consensus 100 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~ 176 (295)
T 2clq_A 100 QVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGI 176 (295)
T ss_dssp CCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-
T ss_pred eCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCC
Confidence 9999999999986422 35679999999999999999999 779999999999999987 899999999999876432
Q ss_pred CCCCccccccccccccccccccCCc--ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMR--VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
.. ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||................ . ..+...
T Consensus 177 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~-~-----~~~~~~ 248 (295)
T 2clq_A 177 NP--CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF-K-----VHPEIP 248 (295)
T ss_dssp ------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHH-C-----CCCCCC
T ss_pred CC--cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccc-c-----cccccc
Confidence 21 224567999999999987643 7899999999999999999999997533322111111000 0 001111
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
...+.++.+++.+||+.||++|||+.|++++
T Consensus 249 ------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~ 279 (295)
T 2clq_A 249 ------ESMSAEAKAFILKCFEPDPDKRACANDLLVD 279 (295)
T ss_dssp ------TTSCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred ------ccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 1223467899999999999999999999864
No 234
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=1.9e-41 Score=371.19 Aligned_cols=260 Identities=17% Similarity=0.226 Sum_probs=201.7
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|... +|+.||+|++.... .....+.+.+|++++++++|||||++++++..++..++|
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 109 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC 109 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC---CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc---CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEE
Confidence 46788899999999999999975 79999999985321 122346799999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
|||+++|+|.++++. ...+++..+..++.|++.||+||| .. +|+||||||+||+++.++.+||+|||+++....
T Consensus 110 ~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 184 (360)
T 3eqc_A 110 MEHMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID 184 (360)
T ss_dssp ECCCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH
T ss_pred EECCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCccccc
Confidence 999999999999986 346899999999999999999999 54 899999999999999999999999999875532
Q ss_pred CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHh-hccccc----------
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRN-SAQQDK---------- 781 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~-~~~~~~---------- 781 (833)
.. .....||+.|+|||++.+..++.++|||||||++|||++|+.||............. ......
T Consensus 185 ~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (360)
T 3eqc_A 185 SM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTP 260 (360)
T ss_dssp HC--------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC-----------------
T ss_pred cc----ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccC
Confidence 21 134679999999999999899999999999999999999999997543221100000 000000
Q ss_pred --------------------ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 782 --------------------LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 782 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.+.+........ .....+.++.+++.+||+.||++|||++|+++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 325 (360)
T 3eqc_A 261 GRPLNKFGMDSRPPMAIFELLDYIVNEPPPKL--PSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH 325 (360)
T ss_dssp -------------CCCHHHHHHHHHHSCCCCC--CTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred CCcccccccCCCCcccchhhhhHHhccCCCCC--CcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence 000000000000 001124578899999999999999999999875
No 235
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=3.3e-41 Score=357.58 Aligned_cols=253 Identities=13% Similarity=0.181 Sum_probs=188.2
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|...++.++|||||++++++..++..++|
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 84 (290)
T 3fme_A 7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN--SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 84 (290)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C--HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred HhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC--cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence 5688889999999999999997 5899999999953211 111233455556668889999999999999999999999
Q ss_pred EeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 634 YEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
|||++ |+|.+++... ....+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+|||+++..
T Consensus 85 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T 3fme_A 85 MELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 160 (290)
T ss_dssp EECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred Eehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 99997 5888877531 2457999999999999999999999 65 8999999999999999999999999999876
Q ss_pred CCCCCCCccccccccccccccccc----cCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296 711 DPSKSTGSLSTVAGSVGYIPPEYA----YTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL 786 (833)
Q Consensus 711 ~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (833)
..... .....||+.|+|||++ .+..++.++||||+||++|||+||+.||.................. ..
T Consensus 161 ~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~-- 233 (290)
T 3fme_A 161 VDDVA---KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPS--PQ-- 233 (290)
T ss_dssp ------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCC--CC--
T ss_pred ccccc---ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCC--CC--
Confidence 43322 2345799999999996 4567899999999999999999999999864433322222211110 00
Q ss_pred cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.. ....+.++.+++.+||+.||++|||+.|+++|
T Consensus 234 ---~~-----~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~h 267 (290)
T 3fme_A 234 ---LP-----ADKFSAEFVDFTSQCLKKNSKERPTYPELMQH 267 (290)
T ss_dssp ---CC-----TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred ---cc-----cccCCHHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence 00 01223467899999999999999999999874
No 236
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=9.5e-42 Score=359.57 Aligned_cols=255 Identities=17% Similarity=0.254 Sum_probs=201.1
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--CCceE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--SDSAY 631 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~~~~~ 631 (833)
++|+..+.||+|+||.||+|... +|+.||||++..... .....+.|.+|++++++++|||||++++++.. .+..+
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 83 (279)
T 2w5a_A 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM--TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY 83 (279)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccC--CHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence 46788899999999999999974 799999999953221 12235679999999999999999999998854 56799
Q ss_pred EEEeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCC-----eeecCCCccceeeCCCCCceeccc
Q 003296 632 LFYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNP-----ILLLDLSTRNIFLKSLKEPQIGDI 704 (833)
Q Consensus 632 lv~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~-----iiHrdlk~~Nill~~~~~~ki~df 704 (833)
+||||+++|+|.+++.... ...+++..+..++.|++.||+||| ..+ |+||||||+||+++.++.+||+||
T Consensus 84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~df 160 (279)
T 2w5a_A 84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDF 160 (279)
T ss_dssp EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCC
T ss_pred EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecC
Confidence 9999999999999997532 235899999999999999999999 555 999999999999999999999999
Q ss_pred eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296 705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH 784 (833)
Q Consensus 705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 784 (833)
|+++...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ...... .. .....
T Consensus 161 g~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~~~~i-~~-~~~~~ 235 (279)
T 2w5a_A 161 GLARILNHDT--SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK-ELAGKI-RE-GKFRR 235 (279)
T ss_dssp CHHHHC---C--HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHH-HH-TCCCC
T ss_pred chheeecccc--ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH-HHHHHH-hh-ccccc
Confidence 9998654322 1123467999999999998888999999999999999999999999754322 111111 11 11100
Q ss_pred cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL 830 (833)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~ 830 (833)
+. ...+.++.+++.+||+.||++|||+.||++++.
T Consensus 236 -----~~------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~ 270 (279)
T 2w5a_A 236 -----IP------YRYSDELNEIITRMLNLKDYHRPSVEEILENPL 270 (279)
T ss_dssp -----CC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred -----CC------cccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence 11 012346789999999999999999999998764
No 237
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=9.8e-42 Score=374.78 Aligned_cols=255 Identities=10% Similarity=-0.010 Sum_probs=180.1
Q ss_pred hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHH---HHHhcCCCCCcccce-------EEE
Q 003296 556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKEL---EVLGKLSNSNVMTPL-------AYV 624 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~---~~l~~l~H~niv~~~-------~~~ 624 (833)
.|...+.||+|+||.||+|+. .+|+.||||++.... .......+.+.+|+ ++|++ +|||||+++ +++
T Consensus 63 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 63 KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGA-ENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCS-TTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred eeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecc-cccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence 467789999999999999996 489999999995332 11223345778885 45555 799988755 444
Q ss_pred ecC-----------------CceEEEEeeCCCCChhhhhhcCCCCCCCHHHH------HHHHHHHHHHHHhhhcCCCCCe
Q 003296 625 LAS-----------------DSAYLFYEYAPKGTLFDVLHGCLENALDWASR------YSIAVGVAQGLAFLHGFTSNPI 681 (833)
Q Consensus 625 ~~~-----------------~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~------~~i~~~i~~~l~ylH~~~~~~i 681 (833)
..+ ...|+|||||+ |+|.++++.. ...+++..+ ..++.|+++||+||| +.+|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~i 215 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL-DFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGL 215 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH-HHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh-ccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCC
Confidence 433 23799999999 8999999853 123455566 788899999999999 7889
Q ss_pred eecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCC
Q 003296 682 LLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGK 759 (833)
Q Consensus 682 iHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~ 759 (833)
+||||||+|||++.++.+||+|||+++..... .....||+.|+|||++.+ ..++.++|||||||++|||+||+
T Consensus 216 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~ 290 (371)
T 3q60_A 216 VHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF 290 (371)
T ss_dssp EETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred ccCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999875321 124567799999999987 67999999999999999999999
Q ss_pred CcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 760 TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 760 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.||.+....... .. .............. .......+.++.+++.+||+.||++|||+.|+++|
T Consensus 291 ~Pf~~~~~~~~~---~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 353 (371)
T 3q60_A 291 LPFGLVTPGIKG---SW-KRPSLRVPGTDSLA--FGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMET 353 (371)
T ss_dssp CSTTBCCTTCTT---CC-CBCCTTSCCCCSCC--CTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTS
T ss_pred CCCCCcCccccc---ch-hhhhhhhccccccc--hhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 999754221000 00 00000000000110 00011234578899999999999999999999764
No 238
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=370.24 Aligned_cols=266 Identities=18% Similarity=0.255 Sum_probs=183.8
Q ss_pred HHHhcCC-ccccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--
Q 003296 553 MEAVANP-LNVELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-- 626 (833)
Q Consensus 553 ~~~~~~~-~~~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-- 626 (833)
..+.|+. .+.||+|+||.||+|+.. +++.||||++... ...+.+.+|+++|++++|||||+++++|..
T Consensus 18 ~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~------~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 91 (405)
T 3rgf_A 18 VEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT------GISMSACREIALLRELKHPNVISLQKVFLSHA 91 (405)
T ss_dssp HHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS------SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETT
T ss_pred hhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC------CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCC
Confidence 3455665 458999999999999964 6889999999422 234578999999999999999999999964
Q ss_pred CCceEEEEeeCCCCChhhhhhcC-------CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee----CC
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGC-------LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL----KS 695 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~-------~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill----~~ 695 (833)
....|+||||++ |+|.+++... ....+++..++.|+.|++.||+||| +.+|+||||||+|||+ +.
T Consensus 92 ~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~ 167 (405)
T 3rgf_A 92 DRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPE 167 (405)
T ss_dssp TTEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTT
T ss_pred CCeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCC
Confidence 678999999997 5888887631 1224899999999999999999999 7889999999999999 67
Q ss_pred CCCceeccceeeeeeCCCCCC-CccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccH-----
Q 003296 696 LKEPQIGDIELCKVIDPSKST-GSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNEL----- 768 (833)
Q Consensus 696 ~~~~ki~dfgl~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~----- 768 (833)
++.+||+|||+++........ ......+||+.|+|||++.+. .++.++|||||||++|||++|+.||.+....
T Consensus 168 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~ 247 (405)
T 3rgf_A 168 RGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSN 247 (405)
T ss_dssp TTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------C
T ss_pred CCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccc
Confidence 789999999999876432211 123457899999999998874 5899999999999999999999999743321
Q ss_pred ----HHHH--HHhhccc--cccccccc------------ccccCCchhHH-------HHHHHHHHHHHhccCCCCCCCCC
Q 003296 769 ----AKWV--LRNSAQQ--DKLDHILD------------FNVSRTSLAVR-------SQMLTVLKVAVACVSVSPEARPK 821 (833)
Q Consensus 769 ----~~~~--~~~~~~~--~~~~~~~~------------~~~~~~~~~~~-------~~~~~~~~l~~~cl~~dP~~Rps 821 (833)
.... ....... .....+.. ........... ....++.+++.+||+.||++|||
T Consensus 248 ~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~t 327 (405)
T 3rgf_A 248 PYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRIT 327 (405)
T ss_dssp CCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCC
T ss_pred cchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCC
Confidence 1111 0000000 00000000 00000000000 01346789999999999999999
Q ss_pred HHHHHHH
Q 003296 822 MKSVLRM 828 (833)
Q Consensus 822 ~~evl~~ 828 (833)
++|+++|
T Consensus 328 a~e~L~h 334 (405)
T 3rgf_A 328 SEQAMQD 334 (405)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 9999875
No 239
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=4e-41 Score=368.88 Aligned_cols=264 Identities=18% Similarity=0.221 Sum_probs=201.6
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~ 628 (833)
..|...+.||+|+||.||+|... +|+.||||++.... .....+.+.+|++++++++|||||++++++... .
T Consensus 27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE---HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT---CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc---CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 46888899999999999999964 78999999995221 122346789999999999999999999999765 3
Q ss_pred ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK 708 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~ 708 (833)
..|+||||++ |+|.+++.. ..+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 104 ~~~iv~e~~~-~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~ 176 (364)
T 3qyz_A 104 DVYIVQDLME-TDLYKLLKT---QHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLAR 176 (364)
T ss_dssp CEEEEEECCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred eEEEEEcccC-cCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceE
Confidence 6899999997 599999975 35899999999999999999999 7899999999999999999999999999998
Q ss_pred eeCCCCCC-CccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc---
Q 003296 709 VIDPSKST-GSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD--- 783 (833)
Q Consensus 709 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~--- 783 (833)
........ ......+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+...................
T Consensus 177 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~ 256 (364)
T 3qyz_A 177 VADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDL 256 (364)
T ss_dssp ECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHH
T ss_pred ecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHH
Confidence 76533221 11245689999999998754 45899999999999999999999999865443322211110000000
Q ss_pred -cccc------------ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 784 -HILD------------FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 784 -~~~~------------~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.+.+ ...............++.+++.+||+.||++|||+.|+++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 314 (364)
T 3qyz_A 257 NCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH 314 (364)
T ss_dssp HTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 0000 00000000001224578899999999999999999999875
No 240
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=3.6e-41 Score=357.44 Aligned_cols=260 Identities=23% Similarity=0.297 Sum_probs=197.3
Q ss_pred HhcCCccccccCcccEEEEEEcC--CCc--eEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP--SGM--SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~--~~~--~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
++|+..+.||+|+||.||+|+.. ++. .||||+++.. ........+.|.+|++++++++|||||++++++..++ .
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPD-VLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccC-ccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 46788899999999999999853 333 6899998422 2122234578999999999999999999999998765 8
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
++||||+++|+|.+++... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+|++|||+++..
T Consensus 96 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 171 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL 171 (291)
T ss_dssp EEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred eeeEecccCCCHHHHHHhc-cCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEccccccccc
Confidence 9999999999999999753 245899999999999999999999 779999999999999999999999999999877
Q ss_pred CCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 711 DPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 711 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
....... ......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... +.............
T Consensus 172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-~~~~~~~~~~~~~~----- 245 (291)
T 1u46_A 172 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS-QILHKIDKEGERLP----- 245 (291)
T ss_dssp CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHHHHTSCCCCC-----
T ss_pred cccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH-HHHHHHHccCCCCC-----
Confidence 5433211 1224568889999999988889999999999999999999 99999754432 22222111111100
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
. ....+.++.+++.+||+.||++|||+.|++++|++++
T Consensus 246 -~------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 283 (291)
T 1u46_A 246 -R------PEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ 283 (291)
T ss_dssp -C------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred -C------CcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhC
Confidence 0 0123456889999999999999999999999998763
No 241
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=4.5e-41 Score=358.03 Aligned_cols=256 Identities=20% Similarity=0.211 Sum_probs=205.2
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccch-----hhhccChhHHHHHHHHHhcCC-CCCcccceEEEec
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDK-----IFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLA 626 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~ 626 (833)
.+.|+..+.||+|+||.||+|... +|+.||||++..... .......+.+.+|++++++++ ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 356788899999999999999974 789999999853211 111123467899999999996 9999999999999
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceecccee
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL 706 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl 706 (833)
++..++||||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~ 170 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTE--KVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGF 170 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred CCeEEEEEeccCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEecccc
Confidence 9999999999999999999986 346899999999999999999999 78999999999999999999999999999
Q ss_pred eeeeCCCCCCCcccccccccccccccccc------CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc
Q 003296 707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAY------TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD 780 (833)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 780 (833)
++...... ......||+.|+|||++. ...++.++|||||||++|||++|+.||.......... .......
T Consensus 171 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~-~~~~~~~ 246 (298)
T 1phk_A 171 SCQLDPGE---KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR-MIMSGNY 246 (298)
T ss_dssp CEECCTTC---CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH-HHHHTCC
T ss_pred hhhcCCCc---ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHH-HHhcCCc
Confidence 98765433 224567999999999875 4568899999999999999999999997544322111 1111100
Q ss_pred cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
. .........+.++.+++.+||+.||++|||+.|++++
T Consensus 247 ~----------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (298)
T 1phk_A 247 Q----------FGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH 284 (298)
T ss_dssp C----------CCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred c----------cCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence 0 0001111234578899999999999999999999864
No 242
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=1.6e-40 Score=366.51 Aligned_cols=203 Identities=20% Similarity=0.175 Sum_probs=173.8
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CC-----CcccceEEEec
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NS-----NVMTPLAYVLA 626 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~-----niv~~~~~~~~ 626 (833)
.+.|+..+.||+|+||.||+|... +|+.||||+++... ...+++.+|+++++.++ |+ +||++++++..
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~ 127 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-----AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF 127 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-----HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-----HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence 457888999999999999999974 78999999995221 12456788999998885 55 49999999999
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC--CCCCceeccc
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK--SLKEPQIGDI 704 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~--~~~~~ki~df 704 (833)
++..|+||||++ |+|.+++.......+++..+..++.|++.||+|||++ ..+||||||||+|||++ .++.+||+||
T Consensus 128 ~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DF 205 (382)
T 2vx3_A 128 RNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDF 205 (382)
T ss_dssp TTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCC
T ss_pred CCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEec
Confidence 999999999996 5999999876555699999999999999999999953 46899999999999994 5788999999
Q ss_pred eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH
Q 003296 705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL 768 (833)
Q Consensus 705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~ 768 (833)
|+++..... ....+||+.|+|||++.+..++.++|||||||++|||+||+.||.+....
T Consensus 206 G~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~ 264 (382)
T 2vx3_A 206 GSSCQLGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEV 264 (382)
T ss_dssp TTCEETTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred cCceecccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 999876432 23568999999999999989999999999999999999999999865543
No 243
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=6.4e-41 Score=361.76 Aligned_cols=267 Identities=17% Similarity=0.198 Sum_probs=205.1
Q ss_pred HHHhcCCccccccCcccEEEEEEc--CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC---CCCCcccceEEEe--
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVM--PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL---SNSNVMTPLAYVL-- 625 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~~~~~-- 625 (833)
+.+.|+..+.||+|+||.||+|.. .+|+.||||++..... .......+.+|+++++++ +||||++++++|.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~ 86 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTG--EEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS 86 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBC--TTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcc--cccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence 345788899999999999999997 4689999999853221 122345678898888777 8999999999997
Q ss_pred ---cCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296 626 ---ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702 (833)
Q Consensus 626 ---~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~ 702 (833)
.....++||||++ |+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~ 162 (326)
T 1blx_A 87 RTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLA 162 (326)
T ss_dssp ECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred ccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEe
Confidence 4567899999998 69999998765556999999999999999999999 7899999999999999999999999
Q ss_pred cceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh--ccc-
Q 003296 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS--AQQ- 779 (833)
Q Consensus 703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~--~~~- 779 (833)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+..... ...
T Consensus 163 Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~ 239 (326)
T 1blx_A 163 DFGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPG 239 (326)
T ss_dssp SCCSCCCCCGGG---GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred cCcccccccCCC---CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCC
Confidence 999998654221 22456799999999999988999999999999999999999999986554433221111 000
Q ss_pred -ccccc-------cccc-cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 780 -DKLDH-------ILDF-NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 780 -~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..... .... ............+..+.+++.+||+.||++|||+.|+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 297 (326)
T 1blx_A 240 EEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH 297 (326)
T ss_dssp GGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred cccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 00000 0000 0000000011234567899999999999999999999865
No 244
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=1.1e-40 Score=366.29 Aligned_cols=259 Identities=17% Similarity=0.168 Sum_probs=197.4
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce---
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA--- 630 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~--- 630 (833)
+.|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+.+|++++++++|||||+++++|...+..
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF--QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccc--cchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 4677889999999999999996 479999999995321 1122346789999999999999999999999887654
Q ss_pred ---EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 631 ---YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 631 ---~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
|+||||++ |+|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a 191 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLA 191 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC
T ss_pred eeEEEEEcccc-ccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcc
Confidence 99999997 699888753 4899999999999999999999 779999999999999999999999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL 786 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (833)
+..... ....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+..............+....+..
T Consensus 192 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~ 266 (371)
T 4exu_A 192 RHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFV 266 (371)
T ss_dssp -------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred cccccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHH
Confidence 865432 245679999999999876 67899999999999999999999999865543322211111000000000
Q ss_pred cc-----------ccc-CC----chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 787 DF-----------NVS-RT----SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 787 ~~-----------~~~-~~----~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.. ... .. .........++.+++.+||+.||++|||++|+++|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 267 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp TTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 00 000 00 00011234678899999999999999999999875
No 245
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=5.9e-41 Score=367.61 Aligned_cols=269 Identities=16% Similarity=0.156 Sum_probs=196.8
Q ss_pred HHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhh-------hccChhHHHHHHHHHhcCCCCCcccceEEE
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIF-------QLGSHHKFDKELEVLGKLSNSNVMTPLAYV 624 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~-------~~~~~~~~~~E~~~l~~l~H~niv~~~~~~ 624 (833)
.+.+.|...+.||+|+||.||+|...+|..||||++....... .....+.|.+|++++++++|||||++++++
T Consensus 19 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 98 (362)
T 3pg1_A 19 AMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIF 98 (362)
T ss_dssp HTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEE
T ss_pred HhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeE
Confidence 5667899999999999999999999889999999984321111 011136799999999999999999999999
Q ss_pred ecC-----CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296 625 LAS-----DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP 699 (833)
Q Consensus 625 ~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ 699 (833)
... ...|+||||++ |+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 99 ~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~ 173 (362)
T 3pg1_A 99 VHFEEPAMHKLYLVTELMR-TDLAQVIHDQ-RIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLADNNDI 173 (362)
T ss_dssp EECCTTTCCEEEEEEECCS-EEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCE
T ss_pred EeccCCCcceEEEEEccCC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEEcCCCCE
Confidence 543 35899999998 6999988753 346999999999999999999999 7789999999999999999999
Q ss_pred eeccceeeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcc
Q 003296 700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ 778 (833)
Q Consensus 700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 778 (833)
||+|||+++...... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..............
T Consensus 174 kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~ 250 (362)
T 3pg1_A 174 TICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVV 250 (362)
T ss_dssp EECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH
T ss_pred EEEecCccccccccc---ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHc
Confidence 999999998654332 2245679999999998876 678999999999999999999999998654332221111000
Q ss_pred c-cccc-----------ccccccc---cC--CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 779 Q-DKLD-----------HILDFNV---SR--TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 779 ~-~~~~-----------~~~~~~~---~~--~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
. .... ....... .. ...........+.+++.+||+.||++|||+.|+++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 317 (362)
T 3pg1_A 251 GTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH 317 (362)
T ss_dssp CCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence 0 0000 0000000 00 000011224568899999999999999999999875
No 246
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=1.1e-40 Score=361.97 Aligned_cols=260 Identities=16% Similarity=0.212 Sum_probs=202.9
Q ss_pred HhcCCccccccCcccEEEEEEc--CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC------cccceEEEec
Q 003296 555 AVANPLNVELKTRFSTYYKAVM--PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN------VMTPLAYVLA 626 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n------iv~~~~~~~~ 626 (833)
+.|+..+.||+|+||.||+|.. .+|+.||||+++... ...+.+.+|++++++++|++ ++++++++..
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~ 88 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-----RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH 88 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-----HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-----chhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence 4678889999999999999986 378999999994221 12467889999999987765 9999999999
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-----------
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS----------- 695 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~----------- 695 (833)
.+..++||||+ +|+|.+++.......+++.++..++.|+++||+||| +.+|+||||||+||+++.
T Consensus 89 ~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~ 164 (339)
T 1z57_A 89 HGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKI 164 (339)
T ss_dssp TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC---
T ss_pred CCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCcc
Confidence 99999999999 889999998755557899999999999999999999 789999999999999987
Q ss_pred --------CCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296 696 --------LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767 (833)
Q Consensus 696 --------~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~ 767 (833)
++.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 165 ~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~ 239 (339)
T 1z57_A 165 KRDERTLINPDIKVVDFGSATYDDEHH-----STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDS 239 (339)
T ss_dssp -CEEEEESCCCEEECCCSSCEETTSCC-----CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCH
T ss_pred ccccccccCCCceEeeCcccccCcccc-----ccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCh
Confidence 6689999999998754322 346899999999999998999999999999999999999999985543
Q ss_pred HHHHHHHhhccccccccc---------cc---ccc-----------------cCCchhHHHHHHHHHHHHHhccCCCCCC
Q 003296 768 LAKWVLRNSAQQDKLDHI---------LD---FNV-----------------SRTSLAVRSQMLTVLKVAVACVSVSPEA 818 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~---------~~---~~~-----------------~~~~~~~~~~~~~~~~l~~~cl~~dP~~ 818 (833)
.................+ .. ... ............++.+++.+||+.||++
T Consensus 240 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 319 (339)
T 1z57_A 240 KEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAK 319 (339)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred HHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccc
Confidence 222111100000000000 00 000 0000001134567889999999999999
Q ss_pred CCCHHHHHHH
Q 003296 819 RPKMKSVLRM 828 (833)
Q Consensus 819 Rps~~evl~~ 828 (833)
|||+.|+++|
T Consensus 320 Rpt~~ell~h 329 (339)
T 1z57_A 320 RITLREALKH 329 (339)
T ss_dssp SCCHHHHTTS
T ss_pred ccCHHHHhcC
Confidence 9999999876
No 247
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=4.2e-41 Score=359.00 Aligned_cols=253 Identities=16% Similarity=0.230 Sum_probs=198.5
Q ss_pred HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
.+.|+..+.||+|+||.||+|... +|+.||+|++... .....+.|.+|++++++++|||||++++++..++..++
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 93 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK----SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWI 93 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC----CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEE
Confidence 356788899999999999999975 6899999998422 23446789999999999999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
||||+++|+|.+++... ...+++..+..++.|++.||+||| ..+|+||||||+||+++.++.+||+|||++.....
T Consensus 94 v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 169 (302)
T 2j7t_A 94 MIEFCPGGAVDAIMLEL-DRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLK 169 (302)
T ss_dssp EEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHH
T ss_pred EEEeCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCccccc
Confidence 99999999999998753 345899999999999999999999 77999999999999999999999999998754321
Q ss_pred CCCCCccccccccccccccccc-----cCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYA-----YTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (833)
.. .......||+.|+|||++ .+..++.++|||||||++|||++|+.||.......... ..... .. ....
T Consensus 170 ~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~-~~~~~-~~-~~~~- 243 (302)
T 2j7t_A 170 TL--QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL-KIAKS-DP-PTLL- 243 (302)
T ss_dssp HH--HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH-HHHHS-CC-CCCS-
T ss_pred cc--cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHH-HHhcc-CC-cccC-
Confidence 11 011345799999999987 35678999999999999999999999997654332211 11111 10 0000
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.....+.++.+++.+||+.||++|||+.|+++|
T Consensus 244 --------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 276 (302)
T 2j7t_A 244 --------TPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH 276 (302)
T ss_dssp --------SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred --------CccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 011223467899999999999999999999864
No 248
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=9.4e-41 Score=370.96 Aligned_cols=261 Identities=14% Similarity=0.126 Sum_probs=200.2
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC--------CCCcccceEEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS--------NSNVMTPLAYV 624 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~--------H~niv~~~~~~ 624 (833)
.+.|+..+.||+|+||.||+|+. .+|+.||||++.... ...+.+.+|++++++++ |||||+++++|
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~ 110 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-----HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDF 110 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-----HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-----cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecce
Confidence 35688889999999999999986 578999999995221 12467899999999996 78899999999
Q ss_pred e----cCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCC--
Q 003296 625 L----ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLK-- 697 (833)
Q Consensus 625 ~----~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~-- 697 (833)
. .....|+||||+ +|++.+++.......+++..++.++.|++.||+||| +. +|+||||||+|||++.++
T Consensus 111 ~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~ 186 (397)
T 1wak_A 111 KISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQY 186 (397)
T ss_dssp EEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHH
T ss_pred eecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchh
Confidence 8 556799999999 667777776544457999999999999999999999 66 899999999999999775
Q ss_pred -----------------------------------------------CceeccceeeeeeCCCCCCCccccccccccccc
Q 003296 698 -----------------------------------------------EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIP 730 (833)
Q Consensus 698 -----------------------------------------------~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~a 730 (833)
.+||+|||+++..... ....+||+.|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~a 261 (397)
T 1wak_A 187 IRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRS 261 (397)
T ss_dssp HHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCC
T ss_pred hhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccC
Confidence 7999999999876432 234679999999
Q ss_pred cccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc------HHHH--HHHhhccc--------cccccccccc-----
Q 003296 731 PEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE------LAKW--VLRNSAQQ--------DKLDHILDFN----- 789 (833)
Q Consensus 731 PE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~------~~~~--~~~~~~~~--------~~~~~~~~~~----- 789 (833)
||++.+..++.++|||||||++|||+||+.||..... .... +....... ..........
T Consensus 262 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1wak_A 262 LEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKH 341 (397)
T ss_dssp HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSS
T ss_pred ChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccc
Confidence 9999998999999999999999999999999974321 1111 10000000 0000000000
Q ss_pred ---ccC---------CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 790 ---VSR---------TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 790 ---~~~---------~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
... ..........++.+++.+||+.||++|||++|+++|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 392 (397)
T 1wak_A 342 ITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH 392 (397)
T ss_dssp CCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred ccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence 000 000123456788999999999999999999999975
No 249
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=3.2e-41 Score=372.98 Aligned_cols=260 Identities=16% Similarity=0.190 Sum_probs=195.3
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc-----
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS----- 629 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~----- 629 (833)
..|...+.||+|+||.||+|+...+..||||++.... +...+|++++++++|||||+++++|...+.
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~--------~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~ 111 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK--------RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEV 111 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT--------TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc--------chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCce
Confidence 3577889999999999999998777779999984221 223479999999999999999999975443
Q ss_pred -eEEEEeeCCCCChhhhhh-cCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC-CCCCceecccee
Q 003296 630 -AYLFYEYAPKGTLFDVLH-GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-SLKEPQIGDIEL 706 (833)
Q Consensus 630 -~~lv~ey~~~g~L~~~l~-~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-~~~~~ki~dfgl 706 (833)
.++|||||+++.+....+ ......+++..+..++.|+++||+||| +.+|+||||||+|||++ .++.+||+|||+
T Consensus 112 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~ 188 (394)
T 4e7w_A 112 FLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGS 188 (394)
T ss_dssp EEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred EEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCC
Confidence 789999998754433322 112346999999999999999999999 78999999999999999 789999999999
Q ss_pred eeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc---
Q 003296 707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL--- 782 (833)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~--- 782 (833)
|+....... .....||+.|+|||++.+. .|+.++||||+||++|||++|+.||.+..............+...
T Consensus 189 a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~ 265 (394)
T 4e7w_A 189 AKILIAGEP---NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQ 265 (394)
T ss_dssp CEECCTTCC---CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHH
T ss_pred cccccCCCC---CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence 998754432 2356789999999998764 589999999999999999999999987654433322111100000
Q ss_pred -----ccccccc---ccCCchh---HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 783 -----DHILDFN---VSRTSLA---VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 783 -----~~~~~~~---~~~~~~~---~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....... ....... ....+.++.+++.+||+.||++|||+.|+++|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 322 (394)
T 4e7w_A 266 IKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH 322 (394)
T ss_dssp HHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence 0000000 0000000 01134578999999999999999999999976
No 250
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=359.97 Aligned_cols=252 Identities=16% Similarity=0.267 Sum_probs=196.8
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec-----
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA----- 626 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~----- 626 (833)
.+.|+..+.||+|+||.||+|.. .+|+.||||++... ....+.+.+|+++++++ +||||+++++++..
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~ 97 (326)
T 2x7f_A 23 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-----GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG 97 (326)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-----SSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--C
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC-----cccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcc
Confidence 45678889999999999999997 58999999998422 12357899999999999 79999999999987
Q ss_pred -CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296 627 -SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE 705 (833)
Q Consensus 627 -~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg 705 (833)
.+..++||||+++|+|.+++.......+++..+..++.|++.||+||| ..+|+||||||+||+++.++.+||+|||
T Consensus 98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg 174 (326)
T 2x7f_A 98 MDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFG 174 (326)
T ss_dssp CCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCT
T ss_pred ccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEeeCc
Confidence 467899999999999999998654457899999999999999999999 7789999999999999999999999999
Q ss_pred eeeeeCCCCCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD 780 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 780 (833)
++........ ......||+.|+|||++. +..++.++|||||||++|||++|+.||.+............ .
T Consensus 175 ~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~-~-- 249 (326)
T 2x7f_A 175 VSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPR-N-- 249 (326)
T ss_dssp TTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH-S--
T ss_pred CceecCcCcc--ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhc-C--
Confidence 9886543221 223467999999999986 55689999999999999999999999976543322211111 1
Q ss_pred cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
........ ..+..+.+++.+||+.||++|||++|++++
T Consensus 250 ~~~~~~~~----------~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 287 (326)
T 2x7f_A 250 PAPRLKSK----------KWSKKFQSFIESCLVKNHSQRPATEQLMKH 287 (326)
T ss_dssp CCCCCSCS----------CSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred ccccCCcc----------ccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 00111000 123467899999999999999999999874
No 251
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=2.6e-40 Score=372.50 Aligned_cols=258 Identities=15% Similarity=0.164 Sum_probs=202.9
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC-cccceEEEecCCceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN-VMTPLAYVLASDSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n-iv~~~~~~~~~~~~~l 632 (833)
+.|+..+.||+|+||.||+|+. .+|+.||||++... ...+++.+|+++++.++|++ |+.+..++...+..++
T Consensus 7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~------~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l 80 (483)
T 3sv0_A 7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVK------TKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL 80 (483)
T ss_dssp TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETT------CSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccc------cccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence 5688899999999999999996 57999999987422 12346899999999998754 5555566677788999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceeccceeeee
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIELCKV 709 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl~~~ 709 (833)
||||+ +|+|.+++... ...++|.+++.|+.||+.||+||| ..+||||||||+|||+ +.++.+||+|||+++.
T Consensus 81 vme~~-g~sL~~ll~~~-~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~ 155 (483)
T 3sv0_A 81 VMDLL-GPSLEDLFNFC-SRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKK 155 (483)
T ss_dssp EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred EEECC-CCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCccee
Confidence 99999 99999999853 346999999999999999999999 7899999999999999 6889999999999998
Q ss_pred eCCCCCCC-----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc--HHHHHHHhhcccccc
Q 003296 710 IDPSKSTG-----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE--LAKWVLRNSAQQDKL 782 (833)
Q Consensus 710 ~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--~~~~~~~~~~~~~~~ 782 (833)
........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ..+........ ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~--~~ 233 (483)
T 3sv0_A 156 YRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEK--KV 233 (483)
T ss_dssp CBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHH--HH
T ss_pred ccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhc--cc
Confidence 75433211 12257899999999999999999999999999999999999999985332 11111111000 00
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
...+. ......+.++.+++.+||+.||++||++.+|++.|+++
T Consensus 234 ~~~~~-------~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l 276 (483)
T 3sv0_A 234 ATSIE-------ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL 276 (483)
T ss_dssp HSCHH-------HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred cccHH-------HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 00000 00112245788999999999999999999999998864
No 252
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=3.9e-41 Score=365.70 Aligned_cols=252 Identities=13% Similarity=0.219 Sum_probs=198.1
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHH-HhcCCCCCcccceEEEecCCceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEV-LGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~-l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
++|+..+.||+|+||.||+|.. .+|+.||||++..... .....++..|+.+ ++.++|||||++++++..++..|+
T Consensus 51 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~l 127 (340)
T 3an0_A 51 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN---SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 127 (340)
T ss_dssp SCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCC---CHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEE
T ss_pred hheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccC---cHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEE
Confidence 4566778999999999999996 5899999999953211 1123556667666 788999999999999999999999
Q ss_pred EEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCCCceeccceeeee
Q 003296 633 FYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
||||+++ +|.+++... ....+++..+..++.|+++||+||| +. +|+||||||+||+++.++.+||+|||+++.
T Consensus 128 v~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 203 (340)
T 3an0_A 128 CMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGY 203 (340)
T ss_dssp EECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCSCCSTTEEECSTTCEEECCCSHHHH
T ss_pred EHHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeCCCcee
Confidence 9999975 999988642 2457999999999999999999999 54 899999999999999999999999999987
Q ss_pred eCCCCCCCcccccccccccccccccc----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAY----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI 785 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 785 (833)
..... ......||+.|+|||++. ...++.++|||||||++|||+||+.||.................. ..
T Consensus 204 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~--~~- 277 (340)
T 3an0_A 204 LVDSV---AKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPS--PQ- 277 (340)
T ss_dssp HSCHH---HHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCC--CC-
T ss_pred ccccc---ccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhcCCC--CC-
Confidence 64221 123357999999999964 346899999999999999999999999864433222222211100 00
Q ss_pred ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.. ....+.++.+++.+||+.||++|||+.|++++
T Consensus 278 ----~~-----~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 311 (340)
T 3an0_A 278 ----LP-----ADKFSAEFVDFTSQCLKKNSKERPTYPELMQH 311 (340)
T ss_dssp ----CC-----GGGSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred ----CC-----cccCCHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 00 01224568899999999999999999999874
No 253
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.3e-38 Score=361.00 Aligned_cols=323 Identities=28% Similarity=0.397 Sum_probs=213.3
Q ss_pred CCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc
Q 003296 7 IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS 86 (833)
Q Consensus 7 l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 86 (833)
+++++.|++++|.+..+|.+..+++|++|||++|.++++.+ |.++++|++|+|++|.+++..+ +..+++|++|+|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 56788999999999888888888999999999999887765 8889999999999999887655 8889999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296 87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV 166 (833)
Q Consensus 87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~ 166 (833)
+|.+++..+ +..+++|++|+|++|.+++. + .++.+++|++|+++ |.+.+..+ +..+++|+.|++++|.+++..
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~ 193 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS 193 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh
Confidence 998886543 88889999999999988864 3 48888999999986 55554332 677777777776666665432
Q ss_pred ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCC
Q 003296 167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT 246 (833)
Q Consensus 167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~ 246 (833)
.-.-.+.|++|++++|++.+..| +..+++|+.|++++|.+++. ..+..+++|+
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------------------------~~l~~l~~L~ 246 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-------------------------GTLASLTNLT 246 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-------------------------GGGGGCTTCS
T ss_pred hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-------------------------hhhhcCCCCC
Confidence 22223445566666665555443 34455555555555555432 1344555666
Q ss_pred EEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCc
Q 003296 247 YLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNS 326 (833)
Q Consensus 247 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 326 (833)
+|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|.
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 66666666555433 5555666666666666554333 5555566666666666654433 4555666666666666
Q ss_pred CcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCc
Q 003296 327 LSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSG 377 (833)
Q Consensus 327 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 377 (833)
+++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred CCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 655444 45556666666666665543 345556666666666655543
No 254
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=1.5e-40 Score=351.92 Aligned_cols=255 Identities=22% Similarity=0.248 Sum_probs=205.2
Q ss_pred HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~ 630 (833)
...+.|+..+.||+|+||.||+|+.. +|+.||||++.... ......+.+.+|++++++++||||+++++++...+..
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 96 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKAS--AKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSF 96 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG--BSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeE
Confidence 56678999999999999999999975 79999999984221 2234567899999999999999999999999999999
Q ss_pred EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC---CCceeccceee
Q 003296 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL---KEPQIGDIELC 707 (833)
Q Consensus 631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~---~~~ki~dfgl~ 707 (833)
++||||+++|+|.+++.. ...+++.++..++.|++.||+||| ..+|+||||||+||+++.+ +.+|++|||++
T Consensus 97 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~ 171 (287)
T 2wei_A 97 YIVGELYTGGELFDEIIK--RKRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLS 171 (287)
T ss_dssp EEEECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGG
T ss_pred EEEEEccCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcc
Confidence 999999999999998875 346899999999999999999999 7799999999999999754 46999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (833)
+...... ......||+.|+|||++.+ .++.++|||||||++|||++|+.||.+..... ...........
T Consensus 172 ~~~~~~~---~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~~------ 240 (287)
T 2wei_A 172 TCFQQNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD-ILKRVETGKYA------ 240 (287)
T ss_dssp GTBCCCS---SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC------
T ss_pred eeecCCC---ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHcCCCC------
Confidence 8654332 1234568999999998765 48999999999999999999999997644322 11111111000
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.........+.++.+++.+||+.||++|||+.|++++
T Consensus 241 ----~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 277 (287)
T 2wei_A 241 ----FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (287)
T ss_dssp ----CCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred ----CCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence 0001111234568899999999999999999999984
No 255
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.2e-41 Score=362.64 Aligned_cols=253 Identities=19% Similarity=0.218 Sum_probs=183.1
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEe-------
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVL------- 625 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~------- 625 (833)
..|+..+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+++++++. |||||++++++.
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~ 103 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNE----EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD 103 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESS----HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTST
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCc----hHHHHHHHHHHHHHHHhccCCChhhccccccccccccc
Confidence 3577889999999999999996 489999999984322 123467899999999996 999999999994
Q ss_pred -cCCceEEEEeeCCCCChhhhhhcC-CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeCCCCCcee
Q 003296 626 -ASDSAYLFYEYAPKGTLFDVLHGC-LENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLKSLKEPQI 701 (833)
Q Consensus 626 -~~~~~~lv~ey~~~g~L~~~l~~~-~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~~~~~~ki 701 (833)
.....++||||+. |+|.+++... ....+++.+++.++.|++.||+||| ..+ |+||||||+||+++.++.+||
T Consensus 104 ~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl 179 (337)
T 3ll6_A 104 TGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKL 179 (337)
T ss_dssp TSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEB
T ss_pred cCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEE
Confidence 2345899999996 7999988642 2346999999999999999999999 666 999999999999999999999
Q ss_pred ccceeeeeeCCCCCCC----------ccccccccccccccccc---cCCcccccCcchhhHHHHHHHHhCCCcccCCccH
Q 003296 702 GDIELCKVIDPSKSTG----------SLSTVAGSVGYIPPEYA---YTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL 768 (833)
Q Consensus 702 ~dfgl~~~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~ 768 (833)
+|||+++......... ......||+.|+|||++ .+..++.++|||||||++|||+||+.||......
T Consensus 180 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~ 259 (337)
T 3ll6_A 180 CDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL 259 (337)
T ss_dssp CCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred ecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH
Confidence 9999998764322110 11245699999999998 5667899999999999999999999999753321
Q ss_pred HHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 769 AKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
. .... ........ .....+.+++.+||+.||++|||+.|++++|+++
T Consensus 260 ~-~~~~----------~~~~~~~~------~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~ 306 (337)
T 3ll6_A 260 R-IVNG----------KYSIPPHD------TQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEI 306 (337)
T ss_dssp -----------------CCCCTTC------CSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred H-hhcC----------cccCCccc------ccchHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1 0000 00000000 1122467899999999999999999999999865
No 256
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=8.5e-41 Score=359.65 Aligned_cols=257 Identities=17% Similarity=0.235 Sum_probs=198.5
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ 634 (833)
+.|+..+.||+|+||.||+|.... .||||+++... ......+.|.+|++++++++|||||++++++..++..++||
T Consensus 33 ~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~ 108 (319)
T 2y4i_B 33 EQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIER--DNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIIT 108 (319)
T ss_dssp SCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCS--CCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEEC
T ss_pred HHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCC--CCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEe
Confidence 457788999999999999998743 59999995322 12234467889999999999999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~ 714 (833)
||+++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||+++ ++.+|++|||+++......
T Consensus 109 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~ 183 (319)
T 2y4i_B 109 SLCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ 183 (319)
T ss_dssp BCCCSEEHHHHTTSS-CCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC------
T ss_pred ecccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCcccccccc
Confidence 999999999999863 346899999999999999999999 77899999999999998 6799999999987653211
Q ss_pred ---CCCccccccccccccccccccC---------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296 715 ---STGSLSTVAGSVGYIPPEYAYT---------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL 782 (833)
Q Consensus 715 ---~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 782 (833)
.........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ......... . .
T Consensus 184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~-~-~ 260 (319)
T 2y4i_B 184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE-AIIWQMGTG-M-K 260 (319)
T ss_dssp ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH-HHHHHHHTT-C-C
T ss_pred ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHhccC-C-C
Confidence 1112234569999999998864 35789999999999999999999999754332 111111111 0 0
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296 783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833 (833)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r 833 (833)
...... ..+.++.+++.+||+.||++|||+.|++++|++++
T Consensus 261 ~~~~~~----------~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~ 301 (319)
T 2y4i_B 261 PNLSQI----------GMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLP 301 (319)
T ss_dssp CCCCCS----------SCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-
T ss_pred CCCCcC----------CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence 010000 11235778999999999999999999999998764
No 257
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=3e-40 Score=361.84 Aligned_cols=267 Identities=17% Similarity=0.134 Sum_probs=190.7
Q ss_pred HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc-
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS- 629 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~- 629 (833)
...+.|...+.||+|+||.||+|+. .+|+.||||++... ......+.+|++.+++++|||||+++++|...+.
T Consensus 20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 20 KEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD-----PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHTTEEEC----------CEEEEETTTCCEEEEEEEECC-----TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC-----ccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 5667899999999999999999997 47999999998422 1234567889999999999999999999976443
Q ss_pred ------eEEEEeeCCCCChhhhhhc--CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCce
Q 003296 630 ------AYLFYEYAPKGTLFDVLHG--CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQ 700 (833)
Q Consensus 630 ------~~lv~ey~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~k 700 (833)
.++||||+++ +|.+.+.. .....+++..+..++.|++.||.|||.+ +.+|+||||||+|||++. ++.+|
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~~k 172 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADGTLK 172 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTTEEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCCcEE
Confidence 8899999986 55554432 1245689999999999999999999943 568999999999999996 89999
Q ss_pred eccceeeeeeCCCCCCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296 701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ 779 (833)
Q Consensus 701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 779 (833)
|+|||+++....... .....||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+...............
T Consensus 173 l~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~ 249 (360)
T 3e3p_A 173 LCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLG 249 (360)
T ss_dssp ECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC
T ss_pred EeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcC
Confidence 999999987654332 24567999999999986544 89999999999999999999999986554332221111000
Q ss_pred cccccc---ccc-----cc---cCCch------hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 780 DKLDHI---LDF-----NV---SRTSL------AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 780 ~~~~~~---~~~-----~~---~~~~~------~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....+. +++ .. ..... .....+.++.+++.+||+.||++|||+.|+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 315 (360)
T 3e3p_A 250 CPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH 315 (360)
T ss_dssp CCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred CCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence 000000 000 00 00000 000135678999999999999999999999875
No 258
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=4.5e-40 Score=351.06 Aligned_cols=254 Identities=21% Similarity=0.317 Sum_probs=193.5
Q ss_pred HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-----
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----- 626 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----- 626 (833)
..++|+..+.||+|+||.||+|+. .+|+.||||++... . ...+.+.+|++++++++||||++++++|.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 78 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-E----EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFV 78 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-H----HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCC
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-H----HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchh
Confidence 457899999999999999999997 48999999999422 1 224679999999999999999999999865
Q ss_pred --------CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC
Q 003296 627 --------SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE 698 (833)
Q Consensus 627 --------~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~ 698 (833)
.+..|+||||+++|+|.++++.. ...+++.+++.++.|+++||+||| +.+|+||||||+||+++.++.
T Consensus 79 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~ 154 (303)
T 1zy4_A 79 KPMTAVKKKSTLFIQMEYCENGTLYDLIHSE-NLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRN 154 (303)
T ss_dssp C------CEEEEEEEEECCCSCBHHHHHHHS-CGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSC
T ss_pred hhhcccccCCceEEEEecCCCCCHHHhhhcc-ccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCC
Confidence 35689999999999999999853 345788999999999999999999 778999999999999999999
Q ss_pred ceeccceeeeeeCCCCC------------CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCC
Q 003296 699 PQIGDIELCKVIDPSKS------------TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQG 765 (833)
Q Consensus 699 ~ki~dfgl~~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~ 765 (833)
+|++|||+++....... ........||+.|+|||++.+. .++.++|||||||++|||++ ||...
T Consensus 155 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~ 231 (303)
T 1zy4_A 155 VKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTG 231 (303)
T ss_dssp EEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSH
T ss_pred EEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCc
Confidence 99999999976542210 1122346799999999998754 68999999999999999998 55432
Q ss_pred ccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 766 NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
................ ..+... ...+..+.+++.+||+.||++|||++|++++
T Consensus 232 ~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 232 MERVNILKKLRSVSIE----FPPDFD------DNKMKVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HHHHHHHHHHHSTTCC----CCTTCC------TTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred hhHHHHHHhccccccc----cCcccc------ccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 2222222211111011 011111 1223467899999999999999999999875
No 259
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.5e-40 Score=363.08 Aligned_cols=264 Identities=17% Similarity=0.174 Sum_probs=199.9
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D 628 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~ 628 (833)
++|...+.||+|+||.||+|... +|+.||||++..... ......+.+|++++++++|||||++++++... .
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 11 SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDK---PLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSS---HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred cceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccccc---chHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 56778899999999999999974 799999999942211 12345788999999999999999999998764 6
Q ss_pred ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK 708 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~ 708 (833)
..++||||++ |+|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 88 ~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (353)
T 2b9h_A 88 EVYIIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLAR 160 (353)
T ss_dssp CEEEEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred eEEEEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEeccccc
Confidence 7899999997 699999875 35899999999999999999999 7899999999999999999999999999998
Q ss_pred eeCCCCCCC--------ccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296 709 VIDPSKSTG--------SLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ 779 (833)
Q Consensus 709 ~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 779 (833)
......... .....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+..............+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~ 240 (353)
T 2b9h_A 161 IIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIG 240 (353)
T ss_dssp ECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred ccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhC
Confidence 764322110 1234579999999998764 6789999999999999999999999986554332221111000
Q ss_pred cc-----ccccccc----------cccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 780 DK-----LDHILDF----------NVSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 780 ~~-----~~~~~~~----------~~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.. ...+... ..... .......+.++.+++.+||+.||++|||++|+++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (353)
T 2b9h_A 241 TPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH 306 (353)
T ss_dssp CCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred CCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 00 0000000 00000 00011234578899999999999999999999875
No 260
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=2.4e-40 Score=387.73 Aligned_cols=256 Identities=19% Similarity=0.260 Sum_probs=201.6
Q ss_pred HHhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~ 629 (833)
.+.|+..+.||+|+||.||+|... .+..||||++.... .....+.|.+|+.++++++|||||++++++. ++.
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~ 464 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENP 464 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSS
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCc
Confidence 356777899999999999999863 35679999984221 1223468999999999999999999999985 567
Q ss_pred eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
.|+||||+++|+|.++++.. ...+++..+..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++.
T Consensus 465 ~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~ 540 (656)
T 2j0j_A 465 VWIIMELCTLGELRSFLQVR-KFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY 540 (656)
T ss_dssp CEEEEECCTTCBHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred eEEEEEcCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCee
Confidence 89999999999999999853 346899999999999999999999 77999999999999999999999999999987
Q ss_pred eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296 710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF 788 (833)
Q Consensus 710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (833)
....... ......||+.|||||++.+..++.++|||||||++|||++ |+.||.+..... ........ ...
T Consensus 541 ~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~-~~~~i~~~-~~~------ 611 (656)
T 2j0j_A 541 MEDSTYY-KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND-VIGRIENG-ERL------ 611 (656)
T ss_dssp CCC-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-HHHHHHHT-CCC------
T ss_pred cCCCcce-eccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHcC-CCC------
Confidence 6433221 2234567889999999988899999999999999999997 999997544322 11111111 100
Q ss_pred cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
... ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus 612 ~~~------~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~i 649 (656)
T 2j0j_A 612 PMP------PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 649 (656)
T ss_dssp CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCC------ccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 011 12235678999999999999999999999999875
No 261
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-38 Score=357.87 Aligned_cols=345 Identities=19% Similarity=0.204 Sum_probs=197.2
Q ss_pred CCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296 5 GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV 84 (833)
Q Consensus 5 ~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 84 (833)
+++++|+.|++++|.++++|.|..+++|++|+|++|+|+++. |+.+++|++|+|++|+|+++ | |+.+++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 345667777777777777766667777777777777776642 66677777777777777664 2 66677777777
Q ss_pred ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296 85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164 (833)
Q Consensus 85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~ 164 (833)
|++|++++. | ++.+++|++|++++|+++++ .++.+++|++|++++|...+.+ .+..+++|+.|++++|++++
T Consensus 113 L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 777777653 3 66677777777777777653 2666777777777777444333 34555555555555555543
Q ss_pred cCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCC
Q 003296 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK 244 (833)
Q Consensus 165 ~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~ 244 (833)
+|-.-.+.|+.|++++|++++. .+..+++|++|++++|+++ + +| +..+++
T Consensus 185 -l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~----------------------~-ip---~~~l~~ 234 (457)
T 3bz5_A 185 -LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT----------------------E-ID---VTPLTQ 234 (457)
T ss_dssp -CCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS----------------------C-CC---CTTCTT
T ss_pred -eccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc----------------------c-cC---ccccCC
Confidence 2222233344444444444432 2344444444444444444 3 22 445556
Q ss_pred CCEEECCCCCCCCCCCccccCCCCCcEEEc----------cCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCC
Q 003296 245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNL----------AQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQL 314 (833)
Q Consensus 245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L----------~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 314 (833)
|++|++++|++++..+ +.+++|+.|++ ++|.+.+.+| ++.+++|+.|++++|...+.+|. ..
T Consensus 235 L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~ 306 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QA 306 (457)
T ss_dssp CSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TT
T ss_pred CCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CC
Confidence 6666666666655432 33444444444 4444433333 23444455555555544444442 12
Q ss_pred CcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccc
Q 003296 315 KLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSS 394 (833)
Q Consensus 315 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~ 394 (833)
.+|+.|+++ ++++|+.|++++|++++. + +.++++|+.|++++|++++ ++. ...|++++
T Consensus 307 ~~L~~L~l~-------------~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l~~-----L~~L~l~~ 364 (457)
T 3bz5_A 307 AGITELDLS-------------QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-FSS-----VGKIPALN 364 (457)
T ss_dssp CCCSCCCCT-------------TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-CTT-----GGGSSGGG
T ss_pred CcceEechh-------------hcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-ccc-----cccccccC
Confidence 333333333 336788888888888874 2 7788888888888888875 221 12355666
Q ss_pred cccccchhhhhccCCCCCEEecccCcCccccchh
Q 003296 395 NLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQL 428 (833)
Q Consensus 395 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 428 (833)
|.++|. ..+..|+.+++++|+++|.+|..
T Consensus 365 n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 365 NNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 666654 23344555666666666665543
No 262
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=3.2e-40 Score=354.09 Aligned_cols=253 Identities=18% Similarity=0.251 Sum_probs=195.5
Q ss_pred HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC--CCCcccceEEEecCCceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS--NSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~--H~niv~~~~~~~~~~~~~l 632 (833)
..|+..+.||+|+||.||+|...+|+.||||++..... .....+.|.+|++++++++ |||||++++++..++..++
T Consensus 28 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 28 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccc--cccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 45778899999999999999998899999999843211 1223467999999999997 5999999999999999999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
||| +.+|+|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+||++++ +.+||+|||+++....
T Consensus 106 v~e-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~ 178 (313)
T 3cek_A 106 VME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQP 178 (313)
T ss_dssp EEC-CCSEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC---
T ss_pred EEe-cCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccccC
Confidence 999 568899999986 346899999999999999999999 779999999999999964 8999999999987654
Q ss_pred CCCCCccccccccccccccccccC-----------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAYT-----------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK 781 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 781 (833)
...........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...................
T Consensus 179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~ 258 (313)
T 3cek_A 179 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHE 258 (313)
T ss_dssp -----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSC
T ss_pred ccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccc
Confidence 332222235679999999999865 468899999999999999999999997654433222221111000
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
...... ...++.+++.+||+.||++|||+.|++++
T Consensus 259 ------~~~~~~------~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 259 ------IEFPDI------PEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp ------CCCCCC------SCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ------cCCccc------chHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 011111 12467889999999999999999999875
No 263
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=355.12 Aligned_cols=263 Identities=22% Similarity=0.247 Sum_probs=192.8
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEe--------
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVL-------- 625 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~-------- 625 (833)
+.|...+.||+|+||.||+|... +|+.||||++.... ....+++.+|++++++++|||||++++++.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 86 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD----PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD 86 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCS----HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCC----hHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence 45778899999999999999975 69999999984322 123567999999999999999999999884
Q ss_pred ------cCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC-CCCC
Q 003296 626 ------ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-SLKE 698 (833)
Q Consensus 626 ------~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-~~~~ 698 (833)
..+..++||||++ |+|.+++.. ..+++..+..++.|+++||+||| +.+|+||||||+||+++ +++.
T Consensus 87 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~ 159 (320)
T 2i6l_A 87 DVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLV 159 (320)
T ss_dssp ----CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTE
T ss_pred ccccccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCe
Confidence 3467899999998 699999974 46899999999999999999999 78999999999999997 5679
Q ss_pred ceeccceeeeeeCCCCC-CCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh
Q 003296 699 PQIGDIELCKVIDPSKS-TGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS 776 (833)
Q Consensus 699 ~ki~dfgl~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 776 (833)
+||+|||+++....... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+............
T Consensus 160 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~ 239 (320)
T 2i6l_A 160 LKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILE 239 (320)
T ss_dssp EEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred EEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 99999999987643211 112234578999999998765 6789999999999999999999999986554322211110
Q ss_pred ccccc-----------ccccccccccCCc----hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 777 AQQDK-----------LDHILDFNVSRTS----LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 777 ~~~~~-----------~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..... ....+........ ......+.++.+++.+||+.||++|||++|+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (320)
T 2i6l_A 240 SIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH 306 (320)
T ss_dssp HSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred hcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence 00000 0000000000000 0011234678899999999999999999999875
No 264
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=2.8e-40 Score=357.78 Aligned_cols=252 Identities=16% Similarity=0.106 Sum_probs=173.3
Q ss_pred HHhcCCc-cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHH-HHHhcCCCCCcccceEEEec----
Q 003296 554 EAVANPL-NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKEL-EVLGKLSNSNVMTPLAYVLA---- 626 (833)
Q Consensus 554 ~~~~~~~-~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~-~~l~~l~H~niv~~~~~~~~---- 626 (833)
.++|... ++||+|+||.||+|... +|+.||||++... ....+|+ ..++.++||||+++++++..
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~ 97 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS---------PKARQEVDHHWQASGGPHIVCILDVYENMHHG 97 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc---------HHHHHHHHHHHHhcCCCChHHHHHHHhhccCC
Confidence 3567764 57999999999999975 7999999999421 1223333 34566799999999999976
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceecc
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGD 703 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~d 703 (833)
....++|||||++|+|.+++.......+++.++..++.|++.||+||| ..+|+||||||+||+++. ++.+||+|
T Consensus 98 ~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~D 174 (336)
T 3fhr_A 98 KRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTD 174 (336)
T ss_dssp EEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECC
T ss_pred CceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEec
Confidence 445899999999999999998755557999999999999999999999 779999999999999976 45599999
Q ss_pred ceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc
Q 003296 704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD 783 (833)
Q Consensus 704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 783 (833)
||+++...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||........... ...
T Consensus 175 fg~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-------~~~ 243 (336)
T 3fhr_A 175 FGFAKETTQNA----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG-------MKR 243 (336)
T ss_dssp CTTCEEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------
T ss_pred cccceeccccc----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh-------HHH
Confidence 99998764322 2356789999999999888999999999999999999999999974332110000 000
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 784 HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.+...............+.++.+++.+||+.||++|||++|++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 288 (336)
T 3fhr_A 244 RIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH 288 (336)
T ss_dssp -------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred hhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 000000000011111234578899999999999999999999985
No 265
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=3.9e-40 Score=359.67 Aligned_cols=259 Identities=18% Similarity=0.167 Sum_probs=196.1
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc----
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS---- 629 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~---- 629 (833)
+.|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+.+|+.++++++|||||++++++...+.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 101 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF--QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 101 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccc--cchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence 3577788999999999999997 479999999994321 112234678999999999999999999999987654
Q ss_pred --eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 630 --AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 630 --~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
.|+||||++ |+|.+++.. .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 102 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~ 173 (353)
T 3coi_A 102 YDFYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLA 173 (353)
T ss_dssp CCCEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCT
T ss_pred eeEEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccc
Confidence 499999997 699888753 4899999999999999999999 779999999999999999999999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc----c
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK----L 782 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~----~ 782 (833)
+..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+......+.......+.. .
T Consensus 174 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~ 248 (353)
T 3coi_A 174 RHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFV 248 (353)
T ss_dssp TC-------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHH
T ss_pred cCCCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence 765322 234679999999999876 678999999999999999999999998655432221111100000 0
Q ss_pred ccccc-----------cccc-CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 783 DHILD-----------FNVS-RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 783 ~~~~~-----------~~~~-~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..+.+ .... .........+.++.+++.+||+.||++|||++|+++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 306 (353)
T 3coi_A 249 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 306 (353)
T ss_dssp TTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 00000 0000 0000011234578899999999999999999999875
No 266
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=5e-40 Score=368.08 Aligned_cols=251 Identities=22% Similarity=0.242 Sum_probs=186.9
Q ss_pred cCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEe
Q 003296 557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYE 635 (833)
Q Consensus 557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~e 635 (833)
|...++||+|+||+||.+...+|+.||||++... ..+.+.+|+++++++ +|||||++++++.+++..|+|||
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E 89 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-------FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALE 89 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEe
Confidence 3445789999999998776678999999998421 135678999999986 89999999999999999999999
Q ss_pred eCCCCChhhhhhcCCCCC-----CCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-------------C
Q 003296 636 YAPKGTLFDVLHGCLENA-----LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-------------K 697 (833)
Q Consensus 636 y~~~g~L~~~l~~~~~~~-----l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-------------~ 697 (833)
||+ |+|.+++....... .++..+..++.|++.||+||| +.+|+||||||+|||++.+ +
T Consensus 90 ~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~ 165 (434)
T 2rio_A 90 LCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENL 165 (434)
T ss_dssp CCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSC
T ss_pred cCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCce
Confidence 995 69999998642211 133346789999999999999 7899999999999999754 4
Q ss_pred CceeccceeeeeeCCCCCCC--ccccccccccccccccccC-------CcccccCcchhhHHHHHHHHh-CCCcccCCcc
Q 003296 698 EPQIGDIELCKVIDPSKSTG--SLSTVAGSVGYIPPEYAYT-------MRVTMAGNVYSFGVILLELLT-GKTAVNQGNE 767 (833)
Q Consensus 698 ~~ki~dfgl~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~ 767 (833)
.+||+|||+++......... .....+||++|+|||++.+ ..++.++|||||||++|||+| |+.||.+...
T Consensus 166 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~ 245 (434)
T 2rio_A 166 RILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS 245 (434)
T ss_dssp EEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT
T ss_pred EEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh
Confidence 89999999999875433211 1234689999999999865 568999999999999999999 9999975443
Q ss_pred HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 768 LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
....+...... .... . .......+.++.+++.+||+.||++|||+.||++|
T Consensus 246 ~~~~i~~~~~~---~~~~-----~--~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 296 (434)
T 2rio_A 246 RESNIIRGIFS---LDEM-----K--CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH 296 (434)
T ss_dssp HHHHHHHTCCC---CCCC-----T--TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred hHHHHhcCCCC---cccc-----c--ccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence 32211111100 1100 0 01123456788999999999999999999999874
No 267
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=7.7e-40 Score=357.73 Aligned_cols=260 Identities=15% Similarity=0.179 Sum_probs=201.0
Q ss_pred HhcCCccccccCcccEEEEEEcC-CC-ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC------cccceEEEec
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SG-MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN------VMTPLAYVLA 626 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n------iv~~~~~~~~ 626 (833)
+.|+..+.||+|+||.||+|... ++ +.||||+++... ...+.+.+|++++++++|++ ++.+++++..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~ 93 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-----KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF 93 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-----HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-----cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence 46888899999999999999974 44 789999994221 12467889999999998766 8999999999
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee-------------
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL------------- 693 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill------------- 693 (833)
.+..++||||+ +|++.+++.......+++.++..++.|++.||+||| +.+|+||||||+|||+
T Consensus 94 ~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~ 169 (355)
T 2eu9_A 94 HGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHK 169 (355)
T ss_dssp TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-
T ss_pred CCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecccccccccccc
Confidence 99999999999 678888887654457999999999999999999999 7899999999999999
Q ss_pred ------CCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296 694 ------KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767 (833)
Q Consensus 694 ------~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~ 767 (833)
+.++.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 170 ~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~ 244 (355)
T 2eu9_A 170 SCEEKSVKNTSIRVADFGSATFDHEHH-----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHEN 244 (355)
T ss_dssp CCCEEEESCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred cccccccCCCcEEEeecCccccccccc-----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCH
Confidence 567899999999998754322 346899999999999988999999999999999999999999986544
Q ss_pred HHHHHHHhhcccccccccc----------ccc--ccC-----------------CchhHHHHHHHHHHHHHhccCCCCCC
Q 003296 768 LAKWVLRNSAQQDKLDHIL----------DFN--VSR-----------------TSLAVRSQMLTVLKVAVACVSVSPEA 818 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~----------~~~--~~~-----------------~~~~~~~~~~~~~~l~~~cl~~dP~~ 818 (833)
.................+. ... ... ..........++.+++.+||+.||++
T Consensus 245 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 324 (355)
T 2eu9_A 245 REHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQ 324 (355)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred HHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhh
Confidence 3222111100000000000 000 000 00001123557889999999999999
Q ss_pred CCCHHHHHHH
Q 003296 819 RPKMKSVLRM 828 (833)
Q Consensus 819 Rps~~evl~~ 828 (833)
|||++|+++|
T Consensus 325 Rpt~~e~l~h 334 (355)
T 2eu9_A 325 RITLAEALLH 334 (355)
T ss_dssp SCCHHHHTTS
T ss_pred CcCHHHHhcC
Confidence 9999999864
No 268
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=360.39 Aligned_cols=323 Identities=20% Similarity=0.195 Sum_probs=269.7
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 89 (833)
-+.++++++.++.+|. .-.+++++|||++|+|+++.+..|.++++|++|+|++|.|+++.|..|.++++|++|+|++|.
T Consensus 13 ~~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4689999999999986 335789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChh
Q 003296 90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG 169 (833)
Q Consensus 90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~ 169 (833)
++.+.+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|..+++|
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------------- 154 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL----------------- 154 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC-----------------
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC-----------------
Confidence 998888889999999999999999999999999999999999999999998888888777664
Q ss_pred hhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEE
Q 003296 170 ITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLE 249 (833)
Q Consensus 170 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~ 249 (833)
+.|+|++|++.+..+..+..+++|+.|+|++|.+.+. ++..|..+++|++|+
T Consensus 155 -----~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-----------------------~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 155 -----EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI-----------------------RDYSFKRLYRLKVLE 206 (477)
T ss_dssp -----CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE-----------------------CTTCSCSCTTCCEEE
T ss_pred -----CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe-----------------------ChhhcccCcccceee
Confidence 4555555555555555566777788888888776532 233456677788888
Q ss_pred CCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcc
Q 003296 250 LDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSG 329 (833)
Q Consensus 250 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 329 (833)
+++|.+.+.+|.......+|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence 88777766666665566688888888888876665678888888888888888887777788888888888888888888
Q ss_pred cCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCcc
Q 003296 330 SIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT 378 (833)
Q Consensus 330 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 378 (833)
..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++.+.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 8888888888888888888888877777888888888888888887643
No 269
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-40 Score=366.81 Aligned_cols=249 Identities=20% Similarity=0.240 Sum_probs=186.0
Q ss_pred hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEE
Q 003296 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFY 634 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ 634 (833)
.|...++||+|+||+||.....+|+.||||++... ....+.+|+++++++ +|||||++++++.+.+..|+||
T Consensus 25 ~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~-------~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~ 97 (432)
T 3p23_A 25 SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE-------CFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAI 97 (432)
T ss_dssp EEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT-------TEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEE
T ss_pred EEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH-------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEE
Confidence 46778899999999966555568999999999421 123467899999999 7999999999999999999999
Q ss_pred eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-----CCCceeccceeeee
Q 003296 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-----LKEPQIGDIELCKV 709 (833)
Q Consensus 635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-----~~~~ki~dfgl~~~ 709 (833)
|||+ |+|.+++.... ....+..+..++.|+++||+||| +.+|+||||||+|||++. ...+||+|||+|+.
T Consensus 98 E~~~-g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~ 172 (432)
T 3p23_A 98 ELCA-ATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK 172 (432)
T ss_dssp ECCS-EEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred ECCC-CCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence 9996 69999998643 23455566789999999999999 778999999999999953 23577999999987
Q ss_pred eCCCCCC-Ccccccccccccccccccc---CCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccc
Q 003296 710 IDPSKST-GSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDH 784 (833)
Q Consensus 710 ~~~~~~~-~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~ 784 (833)
....... ......+||++|+|||++. ...++.++|||||||++|||+| |+.||........... ... ....
T Consensus 173 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~--~~~-~~~~- 248 (432)
T 3p23_A 173 LAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANIL--LGA-CSLD- 248 (432)
T ss_dssp C------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHH--TTC-CCCT-
T ss_pred ccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH--hcc-CCcc-
Confidence 6533211 1234578999999999987 4567889999999999999999 9999964433221111 110 0000
Q ss_pred cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
. ... .......+.+++.+||+.||++|||+.||++|
T Consensus 249 ~----~~~----~~~~~~~~~~li~~~L~~dP~~Rps~~evl~h 284 (432)
T 3p23_A 249 C----LHP----EKHEDVIARELIEKMIAMDPQKRPSAKHVLKH 284 (432)
T ss_dssp T----SCT----TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred c----cCc----cccccHHHHHHHHHHHhCCHhhCCCHHHHHhC
Confidence 0 000 11234567899999999999999999999864
No 270
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=5.5e-40 Score=361.58 Aligned_cols=260 Identities=13% Similarity=0.176 Sum_probs=198.6
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-----------CCCcccceE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-----------NSNVMTPLA 622 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----------H~niv~~~~ 622 (833)
+.|...+.||+|+||.||+|+. .+|+.||||++... . ...+.+.+|++++++++ ||||+++++
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~----~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 93 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-K----VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLD 93 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-H----HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-c----cchhhhhHHHHHHHHhhcccccchhccccchHHHHHH
Confidence 4577889999999999999996 58999999999422 1 12467889999999887 899999999
Q ss_pred EEecCC----ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeC---
Q 003296 623 YVLASD----SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLK--- 694 (833)
Q Consensus 623 ~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~--- 694 (833)
++...+ ..++||||+ +|+|.+++.......+++..+..++.|++.||+||| +. +|+||||||+|||++
T Consensus 94 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~ 169 (373)
T 1q8y_A 94 HFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVD 169 (373)
T ss_dssp EEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEE
T ss_pred HhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEeccC
Confidence 998654 789999999 889999998755567999999999999999999999 66 899999999999994
Q ss_pred ---CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH---
Q 003296 695 ---SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL--- 768 (833)
Q Consensus 695 ---~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~--- 768 (833)
..+.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++|||+||+.||......
T Consensus 170 ~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~ 244 (373)
T 1q8y_A 170 SPENLIQIKIADLGNACWYDEHY-----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYT 244 (373)
T ss_dssp TTTTEEEEEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred CCcCcceEEEcccccccccCCCC-----CCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccC
Confidence 44579999999998764322 3457999999999999989999999999999999999999999743210
Q ss_pred --HHHHHHhhc-ccc--------------------cccccccccc-------cCCchhHHHHHHHHHHHHHhccCCCCCC
Q 003296 769 --AKWVLRNSA-QQD--------------------KLDHILDFNV-------SRTSLAVRSQMLTVLKVAVACVSVSPEA 818 (833)
Q Consensus 769 --~~~~~~~~~-~~~--------------------~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~cl~~dP~~ 818 (833)
......... .+. ....+..... ............++.+++.+||+.||++
T Consensus 245 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 324 (373)
T 1q8y_A 245 KDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRK 324 (373)
T ss_dssp CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTT
T ss_pred ChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccc
Confidence 111100000 000 0000000000 0000111345678899999999999999
Q ss_pred CCCHHHHHHH
Q 003296 819 RPKMKSVLRM 828 (833)
Q Consensus 819 Rps~~evl~~ 828 (833)
|||++|+++|
T Consensus 325 Rpt~~ell~h 334 (373)
T 1q8y_A 325 RADAGGLVNH 334 (373)
T ss_dssp CBCHHHHHTC
T ss_pred cCCHHHHhhC
Confidence 9999999875
No 271
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=6.1e-40 Score=354.21 Aligned_cols=255 Identities=17% Similarity=0.235 Sum_probs=177.3
Q ss_pred HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHH-HHhcCCCCCcccceEEEecCCceEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELE-VLGKLSNSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~~~~~~~~~~~l 632 (833)
++|+..+.||+|+||.||+|.. .+|+.||||++..... .....++.+|+. +++.++|||||++++++..++..++
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l 98 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD---EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI 98 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC---HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC---chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence 4577788999999999999997 4799999999953211 112345666766 7788899999999999999999999
Q ss_pred EEeeCCCCChhhhhhc---CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCCCceeccceeee
Q 003296 633 FYEYAPKGTLFDVLHG---CLENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLKEPQIGDIELCK 708 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~---~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~~~ki~dfgl~~ 708 (833)
||||+++ +|.+++.. .....+++..+..++.|++.||.||| .. +|+||||||+||+++.++.+||+|||+++
T Consensus 99 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~ 174 (327)
T 3aln_A 99 CMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISG 174 (327)
T ss_dssp EECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSC
T ss_pred EEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCce
Confidence 9999985 88877752 22456899999999999999999999 66 89999999999999999999999999998
Q ss_pred eeCCCCCCCccccccccccccccccc----cCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296 709 VIDPSKSTGSLSTVAGSVGYIPPEYA----YTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH 784 (833)
Q Consensus 709 ~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 784 (833)
...... ......||+.|+|||++ .+..++.++|||||||++|||++|+.||.+............. ..
T Consensus 175 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~--~~--- 246 (327)
T 3aln_A 175 QLVDSI---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVK--GD--- 246 (327)
T ss_dssp C---------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCC--SC---
T ss_pred eccccc---ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhc--CC---
Confidence 764332 12345799999999998 4566899999999999999999999999754332211110000 00
Q ss_pred cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.+.+... .......++.+++.+||+.||++|||+.|++++
T Consensus 247 --~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 286 (327)
T 3aln_A 247 --PPQLSNS--EEREFSPSFINFVNLCLTKDESKRPKYKELLKH 286 (327)
T ss_dssp --CCCCCCC--SSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred --CCCCCCc--ccccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence 0001000 001224578899999999999999999999764
No 272
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-37 Score=350.66 Aligned_cols=348 Identities=27% Similarity=0.382 Sum_probs=275.5
Q ss_pred cCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 003296 27 NGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL 106 (833)
Q Consensus 27 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 106 (833)
..+++|+.|++++|.++.+. .|..+++|++|+|++|.++++.| |..+++|++|+|++|.+++..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34678999999999998654 48889999999999999997655 8999999999999999987655 999999999
Q ss_pred EeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccc
Q 003296 107 IDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLG 186 (833)
Q Consensus 107 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~ 186 (833)
|+|++|.+++..+ |..+++|++|+|++|.+++. + .+..+++|+.|+++ |.+.+..+-.-.+.|+.|++++|++.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchhhccCCCCCEEECcCCcCCC
Confidence 9999999987644 89999999999999998864 2 47777777766664 333322222223334455555554443
Q ss_pred cCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCC
Q 003296 187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC 266 (833)
Q Consensus 187 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 266 (833)
. ..+..++ +|+.|++++|.+.+ +++ +..+++|+.|++++|++++. ..+..+
T Consensus 192 ~--~~l~~l~----------------------~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l 242 (466)
T 1o6v_A 192 I--SVLAKLT----------------------NLESLIATNNQISD-ITP--LGILTNLDELSLNGNQLKDI--GTLASL 242 (466)
T ss_dssp C--GGGGGCT----------------------TCSEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred C--hhhccCC----------------------CCCEEEecCCcccc-ccc--ccccCCCCEEECCCCCcccc--hhhhcC
Confidence 2 1233444 45555555554433 222 56789999999999999875 468899
Q ss_pred CCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEc
Q 003296 267 RSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNL 346 (833)
Q Consensus 267 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 346 (833)
++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|+.|+|
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence 999999999999997665 8899999999999999997655 8899999999999999997655 889999999999
Q ss_pred cCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccc
Q 003296 347 RQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIP 426 (833)
Q Consensus 347 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 426 (833)
++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..|
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV------------------------SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC------------------------GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc------------------------hhhccCCCCCEEeCCCCccCccch
Confidence 9999998776 78999999999999988742 246677889999999999988777
Q ss_pred hhccCCCCCCeeeCcCCccccc
Q 003296 427 QLLAQMPTLTQLLLTNNQLSGV 448 (833)
Q Consensus 427 ~~~~~l~~L~~L~ls~N~l~~~ 448 (833)
+..+++|+.|++++|++++.
T Consensus 371 --~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 371 --LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp --GTTCTTCCEEECCCEEEECC
T ss_pred --hhcCCCCCEEeccCCcccCC
Confidence 78888999999999988875
No 273
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=5.8e-40 Score=352.92 Aligned_cols=246 Identities=20% Similarity=0.274 Sum_probs=199.9
Q ss_pred HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh--hccChhHHHHHHHHHhcCC--CCCcccceEEEecC
Q 003296 553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF--QLGSHHKFDKELEVLGKLS--NSNVMTPLAYVLAS 627 (833)
Q Consensus 553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~--~~~~~~~~~~E~~~l~~l~--H~niv~~~~~~~~~ 627 (833)
..+.|+..+.||+|+||.||+|+. .+|+.||||++....... .....+.+.+|++++++++ ||||+++++++..+
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 345688889999999999999986 578999999995322111 0123456889999999996 59999999999999
Q ss_pred CceEEEEeeCCC-CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC-CCCCceeccce
Q 003296 628 DSAYLFYEYAPK-GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-SLKEPQIGDIE 705 (833)
Q Consensus 628 ~~~~lv~ey~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-~~~~~ki~dfg 705 (833)
+..++||||+.+ |+|.+++.. ...+++..+..++.|+++||+||| +.+|+||||||+||+++ +++.+||+|||
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg 195 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITE--RGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFG 195 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred CcEEEEEEcCCCCccHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence 999999999986 899999986 356899999999999999999999 78999999999999999 78999999999
Q ss_pred eeeeeCCCCCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH 784 (833)
Q Consensus 706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 784 (833)
+++...... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||...... .. ...
T Consensus 196 ~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~---~~----~~~---- 260 (320)
T 3a99_A 196 SGALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEI---IR----GQV---- 260 (320)
T ss_dssp TCEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH---HH----CCC----
T ss_pred ccccccccc----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhh---hc----ccc----
Confidence 998765322 234679999999999877665 78899999999999999999999643211 10 000
Q ss_pred cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
.... ..+.++.+++.+||+.||++|||++|++++
T Consensus 261 ~~~~----------~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 294 (320)
T 3a99_A 261 FFRQ----------RVSSECQHLIRWCLALRPSDRPTFEEIQNH 294 (320)
T ss_dssp CCSS----------CCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred cccc----------cCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0000 123467899999999999999999999875
No 274
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=349.76 Aligned_cols=247 Identities=18% Similarity=0.268 Sum_probs=192.3
Q ss_pred HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh--hccChhHHHHHHHHHhcC----CCCCcccceEEE
Q 003296 552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF--QLGSHHKFDKELEVLGKL----SNSNVMTPLAYV 624 (833)
Q Consensus 552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~--~~~~~~~~~~E~~~l~~l----~H~niv~~~~~~ 624 (833)
...+.|...+.||+|+||.||+|.. .+|+.||||++....... .......+.+|+++++++ +||||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 5567899999999999999999987 578999999995322111 112334577899999998 899999999999
Q ss_pred ecCCceEEEEee-CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC-CCCCceec
Q 003296 625 LASDSAYLFYEY-APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-SLKEPQIG 702 (833)
Q Consensus 625 ~~~~~~~lv~ey-~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-~~~~~ki~ 702 (833)
..++..++|||| +++|+|.+++.. ...+++..+..++.|+++||+||| +.+|+||||||+||+++ .++.+||+
T Consensus 108 ~~~~~~~~v~e~~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~ 182 (312)
T 2iwi_A 108 ETQEGFMLVLERPLPAQDLFDYITE--KGPLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLI 182 (312)
T ss_dssp -----CEEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEEC
T ss_pred ecCCeEEEEEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEEE
Confidence 999999999999 789999999986 346899999999999999999999 77899999999999999 88999999
Q ss_pred cceeeeeeCCCCCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK 781 (833)
Q Consensus 703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 781 (833)
|||+++...... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||...... .. ...
T Consensus 183 dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~----~~~- 250 (312)
T 2iwi_A 183 DFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEI---LE----AEL- 250 (312)
T ss_dssp CCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH---HH----TCC-
T ss_pred EcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHHH---hh----hcc-
Confidence 999998765332 245679999999999876666 46899999999999999999999643211 10 000
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
... .....++.+++.+||+.||++|||++|++++
T Consensus 251 -------~~~------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~ 284 (312)
T 2iwi_A 251 -------HFP------AHVSPDCCALIRRCLAPKPSSRPSLEEILLD 284 (312)
T ss_dssp -------CCC------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred -------CCc------ccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000 0123467899999999999999999999975
No 275
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=347.39 Aligned_cols=253 Identities=14% Similarity=0.169 Sum_probs=180.4
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
++|+..+.||+|+||.||+|... +|+.||||++...... ....+.+..+..+++.++||||+++++++..++..++|
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv 102 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNK--EENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIA 102 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCH--HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccc--hHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEE
Confidence 46778899999999999999974 7999999999532211 11223455555678889999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~ 712 (833)
|||+ ++.+..+... ....+++..+..++.|+++||+||| .. +|+||||||+||+++.++.+||+|||+++....
T Consensus 103 ~e~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~ 177 (318)
T 2dyl_A 103 MELM-GTCAEKLKKR-MQGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD 177 (318)
T ss_dssp ECCC-SEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred Eecc-CCcHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence 9999 4455555442 2356899999999999999999999 64 899999999999999999999999999976643
Q ss_pred CCCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296 713 SKSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 713 ~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (833)
.. ......||+.|+|||++. ...++.++|||||||++|||++|+.||...................
T Consensus 178 ~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~------ 248 (318)
T 2dyl_A 178 DK---AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPP------ 248 (318)
T ss_dssp ------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCC------
T ss_pred Cc---cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCC------
Confidence 32 123467999999999984 4568899999999999999999999998644433322222211110
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
..... ...+.++.+++.+||+.||++|||++|++++
T Consensus 249 -~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (318)
T 2dyl_A 249 -LLPGH----MGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH 284 (318)
T ss_dssp -CCCSS----SCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred -CCCcc----CCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 00000 0123467899999999999999999999874
No 276
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.9e-37 Score=348.64 Aligned_cols=350 Identities=19% Similarity=0.217 Sum_probs=244.1
Q ss_pred ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCC
Q 003296 24 PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRN 103 (833)
Q Consensus 24 ~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 103 (833)
..+..+++|++||+++|+|+++ | .|..+++|++|+|++|+|+++ | ++.+++|++|+|++|.+++. | ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 3577889999999999999986 3 689999999999999999975 3 88999999999999999875 3 889999
Q ss_pred CCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccccc
Q 003296 104 LTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNK 183 (833)
Q Consensus 104 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~ 183 (833)
|++|+|++|+++++ | ++.+++|++|++++|++++. .+..+++|+.|++++|...+.++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---------------- 165 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---------------- 165 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC----------------
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc----------------
Confidence 99999999999874 3 88999999999999999874 26666665555555554333333
Q ss_pred ccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccc
Q 003296 184 LLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQL 263 (833)
Q Consensus 184 l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 263 (833)
+..+++|++|++++|.+++ +|..-.++|+.|++++|.+.+ + .+..+++|++|++++|++++. | +
T Consensus 166 --------~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~i-p--~ 229 (457)
T 3bz5_A 166 --------VTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTEI-D--V 229 (457)
T ss_dssp --------CTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCC-C--C
T ss_pred --------cccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCccccc-C--c
Confidence 3444555555555555543 222222445555555554443 2 367788999999999999984 4 7
Q ss_pred cCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCE
Q 003296 264 GSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVN 343 (833)
Q Consensus 264 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 343 (833)
+.+++|+.|++++|++++..+ +.+++|+.|+++.| +|+.|++++|.+.+.+| ++.+++|+.
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~ 290 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKE 290 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCC
T ss_pred cccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCE
Confidence 889999999999999987643 45566666666554 24455666666555554 345566666
Q ss_pred EEccCCccccccCcc--------ccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEe
Q 003296 344 LNLRQNNLNGSIPNS--------ITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLD 415 (833)
Q Consensus 344 L~L~~N~l~~~~p~~--------~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 415 (833)
|+|++|.+.+.+|.. +.++++|++|++++|++++. +.......+.|++++|++++ ++.|..|+
T Consensus 291 L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~ 361 (457)
T 3bz5_A 291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-DVSHNTKLKSLSCVNAHIQD--------FSSVGKIP 361 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-CCTTCTTCSEEECCSSCCCB--------CTTGGGSS
T ss_pred EECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-ccccCCcCcEEECCCCCCCC--------cccccccc
Confidence 666666655544431 33446777888888887763 32222223567777777775 23456667
Q ss_pred cccCcCccccchhccCCCCCCeeeCcCCcccccCCCC
Q 003296 416 LSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF 452 (833)
Q Consensus 416 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 452 (833)
+++|.++|. ..+..|+.+++++|+++|.+|..
T Consensus 362 l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 362 ALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 777777765 24456788899999999998863
No 277
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=8.6e-40 Score=375.21 Aligned_cols=264 Identities=17% Similarity=0.178 Sum_probs=200.0
Q ss_pred HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec------
Q 003296 554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA------ 626 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~------ 626 (833)
...|...+.||+|+||.||+|.. .+|+.||||++.... .....+.|.+|++++++++|||||++++++..
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~---~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~ 89 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL---SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAP 89 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC---CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCT
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccC
Confidence 36799999999999999999997 479999999985321 12235679999999999999999999999865
Q ss_pred CCceEEEEeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---ceec
Q 003296 627 SDSAYLFYEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---PQIG 702 (833)
Q Consensus 627 ~~~~~lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---~ki~ 702 (833)
.+..++|||||++|+|.+++..... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+
T Consensus 90 ~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~ 166 (676)
T 3qa8_A 90 NDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKII 166 (676)
T ss_dssp TSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred CCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEc
Confidence 6778999999999999999986432 36899999999999999999999 788999999999999997665 8999
Q ss_pred cceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc--
Q 003296 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD-- 780 (833)
Q Consensus 703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~-- 780 (833)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......|.........
T Consensus 167 DFG~a~~~~~~~---~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~ 243 (676)
T 3qa8_A 167 DLGYAKELDQGE---LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEH 243 (676)
T ss_dssp SCCCCCBTTSCC---CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------
T ss_pred cccccccccccc---ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchh
Confidence 999998765433 224568999999999999999999999999999999999999999765444443221111000
Q ss_pred -ccccccc------ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 003296 781 -KLDHILD------FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVL 826 (833)
Q Consensus 781 -~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl 826 (833)
....... .....+.......+..+.+++.+||+.||++|||++|++
T Consensus 244 ~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL 296 (676)
T 3qa8_A 244 IVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP 296 (676)
T ss_dssp CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred hhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence 0000000 011111111123456788999999999999999998843
No 278
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.8e-37 Score=346.94 Aligned_cols=354 Identities=26% Similarity=0.325 Sum_probs=228.2
Q ss_pred CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCC-------------CEEEccCCcCcccC
Q 003296 28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKAL-------------EELVLSGNAFHGEI 94 (833)
Q Consensus 28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~ 94 (833)
..++|+.|++++|++ +.+|.+|+++++|++|+|++|.+++..|..++.+.+| ++|++++|.+++.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l- 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL- 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence 356778888888888 5667778888888888888888877778777777765 5555655555542
Q ss_pred CccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcC
Q 003296 95 PKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFL 174 (833)
Q Consensus 95 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L 174 (833)
|.. .++|+.|++++|.+++ +|.. +++|++|++++|.+++. |. +...|
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-------------------------~~-~~~~L 133 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-------------------------SD-LPPLL 133 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-------------------------CS-CCTTC
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-------------------------cC-CCCCC
Confidence 221 2455555555555554 3322 24555555555555431 11 11357
Q ss_pred CEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCC
Q 003296 175 RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNS 254 (833)
Q Consensus 175 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~ 254 (833)
++|++++|++.+ +| .+..+++|++|++++|++++ +|.. .++|+.|++++|.+.+ +| .|..+++|++|++++|+
T Consensus 134 ~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~-~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL-PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSC
T ss_pred CEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC-cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCc
Confidence 888888888876 55 58888888888888888875 4443 3588888888888765 54 47888888888888888
Q ss_pred CCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccc
Q 003296 255 FTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSF 334 (833)
Q Consensus 255 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 334 (833)
+++. |.. .++|++|++++|.+. .+| .++.+++|+.|++++|++++ +|. .+++|++|++++|.+++ +|..
T Consensus 207 l~~l-~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 207 LKKL-PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp CSSC-CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC
T ss_pred CCcC-CCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc
Confidence 8863 332 257888888888887 566 47888888888888888886 343 24678888888888886 4443
Q ss_pred cccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEE
Q 003296 335 LSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVL 414 (833)
Q Consensus 335 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L 414 (833)
+++|+.|++++|++++. |.. .++|+.|++++|++++. +..+ ...+.|++++|++++ +|.. +++|+.|
T Consensus 276 ---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~~~-~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CDLP-PSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp ---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CCCC-TTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred ---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cCCc-CcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 37788888888888763 211 25788888888888763 3222 233568888888886 5543 4778888
Q ss_pred ecccCcCccccchhccCCCCCCeeeCcCCcccc--cCCC
Q 003296 415 DLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSG--VVPK 451 (833)
Q Consensus 415 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~--~~p~ 451 (833)
++++|++++ +|. .+++|+.|++++|++++ .+|.
T Consensus 343 ~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 343 IASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred ECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence 888888884 554 46788888888888888 4554
No 279
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=346.13 Aligned_cols=324 Identities=20% Similarity=0.206 Sum_probs=269.1
Q ss_pred CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296 32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA 111 (833)
Q Consensus 32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 111 (833)
-+.++.++++++.+.. .+ .++|++|+|++|+|+++.|..|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 3578888898886554 33 35889999999999988888999999999999999999988899999999999999999
Q ss_pred CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCcc
Q 003296 112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPID 191 (833)
Q Consensus 112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~ 191 (833)
|+++++.+..|.++++|++|+|++|.+++..|..|..+++ |+.|+|++|++.+..+..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~----------------------L~~L~l~~n~l~~~~~~~ 147 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN----------------------LKSLEVGDNDLVYISHRA 147 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT----------------------CCEEEECCTTCCEECTTS
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc----------------------CCEEECCCCccceeChhh
Confidence 9999877788899999999999999998877777766655 556666677777777777
Q ss_pred CCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcE
Q 003296 192 LLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL 271 (833)
Q Consensus 192 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 271 (833)
|..+++|+.|+|++|.++ .+++..|..+++|+.|+|++|.+.+..+..|..+++|+.
T Consensus 148 ~~~l~~L~~L~l~~n~l~-----------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 204 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLT-----------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204 (477)
T ss_dssp STTCTTCCEEEEESCCCS-----------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred ccCCCCCCEEECCCCcCc-----------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence 888889999999888876 245567888999999999999999888889999999999
Q ss_pred EEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCcc
Q 003296 272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL 351 (833)
Q Consensus 272 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 351 (833)
|++++|.+.+.+|.......+|+.|++++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++
T Consensus 205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 99999988877777776677899999999998877667888888999999999998888888888888899999999988
Q ss_pred ccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCcccc
Q 003296 352 NGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEI 425 (833)
Q Consensus 352 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 425 (833)
++..|..|.++++|+.|+|++|++++. .+..|..+++|+.|++++|.+.+..
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTL----------------------EESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCC----------------------CGGGBSCGGGCCEEECCSSCEECSG
T ss_pred ceECHHHhcCcccCCEEECCCCcCcee----------------------CHhHcCCCcccCEEEccCCCccCcc
Confidence 888888888888888888888877632 2345666777888888888876543
No 280
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=1.8e-38 Score=334.87 Aligned_cols=232 Identities=11% Similarity=0.041 Sum_probs=181.5
Q ss_pred HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
..|+..+.||+|+||.||+|+.. +|+.||||++... ........+.|.+|++++++++|||||++++++..++..|+|
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 109 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQ-GVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV 109 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTT-CCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcc-cccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence 45788899999999999999975 6999999999532 111122347899999999999999999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||+++|+|.++++. + ....++..|+.|++.||+||| +.+|+||||||+|||++.++.+||+++
T Consensus 110 ~e~~~g~~L~~~l~~---~-~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~--------- 173 (286)
T 3uqc_A 110 AEWIRGGSLQEVADT---S-PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYP--------- 173 (286)
T ss_dssp EECCCEEEHHHHHTT---C-CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSC---------
T ss_pred EEecCCCCHHHHHhc---C-CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEec---------
Confidence 999999999999964 2 355578889999999999999 789999999999999999999988733
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (833)
+|++| ++.++|||||||++|||+||+.||.+....... ..............
T Consensus 174 -------------~~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~--------~~~~~~~~~~~~~~ 225 (286)
T 3uqc_A 174 -------------ATMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL--------APAERDTAGQPIEP 225 (286)
T ss_dssp -------------CCCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS--------EECCBCTTSCBCCH
T ss_pred -------------cccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh--------HHHHHHhccCCCCh
Confidence 34544 688999999999999999999999854321100 00001111111110
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA 832 (833)
Q Consensus 794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~ 832 (833)
.......+.++.+++.+||+.||++| |+.|+++.|+++
T Consensus 226 ~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~ 263 (286)
T 3uqc_A 226 ADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQA 263 (286)
T ss_dssp HHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHH
T ss_pred hhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHH
Confidence 01111234578899999999999999 999999999875
No 281
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=8.7e-38 Score=332.66 Aligned_cols=231 Identities=15% Similarity=0.109 Sum_probs=181.6
Q ss_pred HhcCCc-cccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHH-hcCCCCCcccceEEEec----C
Q 003296 555 AVANPL-NVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVL-GKLSNSNVMTPLAYVLA----S 627 (833)
Q Consensus 555 ~~~~~~-~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l-~~l~H~niv~~~~~~~~----~ 627 (833)
++|... ++||+|+||.||+|.. .+|+.||||++.. ...+.+|++++ +..+|||||++++++.. .
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~ 87 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------CPKARREVELHWRASQCPHIVRIVDVYENLYAGR 87 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc---------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCC
Confidence 345555 7899999999999997 5799999999941 24678999998 56689999999999986 6
Q ss_pred CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceeccc
Q 003296 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGDI 704 (833)
Q Consensus 628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~df 704 (833)
...++||||+++|+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+||
T Consensus 88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Df 164 (299)
T 3m2w_A 88 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDF 164 (299)
T ss_dssp EEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCC
T ss_pred ceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEecc
Confidence 77999999999999999998765557999999999999999999999 788999999999999998 788999999
Q ss_pred eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296 705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH 784 (833)
Q Consensus 705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 784 (833)
|+++... +..++.++|||||||++|||+||+.||.+....... ......
T Consensus 165 g~a~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~-------~~~~~~ 213 (299)
T 3m2w_A 165 GFAKETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS-------PGMKTR 213 (299)
T ss_dssp TTCEECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--------------CCSCCS
T ss_pred ccccccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhh-------HHHHHH
Confidence 9886532 134778999999999999999999999754321100 000111
Q ss_pred cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
+...............+.++.+++.+||+.||++|||+.|+++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 214 IRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp SCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 11111111111112345678899999999999999999999875
No 282
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.4e-38 Score=370.13 Aligned_cols=237 Identities=19% Similarity=0.207 Sum_probs=190.1
Q ss_pred HhcCCccccccCcccEEEEEEcC--CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc---
Q 003296 555 AVANPLNVELKTRFSTYYKAVMP--SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS--- 629 (833)
Q Consensus 555 ~~~~~~~~ig~g~~g~vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~--- 629 (833)
+.|...+.||+|+||.||+|++. +|+.||||++..... ....+.|.+|++++++++|||||+++++|...+.
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~ 156 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGD---AEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGD 156 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCC---HHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSC
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCC---HHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCC
Confidence 46888899999999999999974 689999999843211 1234678999999999999999999999987765
Q ss_pred --eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 630 --AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 630 --~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
.|+||||+++|+|.+++.. .++|.+++.|+.|+++||+||| +.+||||||||+|||++.+ .+||+|||++
T Consensus 157 ~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a 228 (681)
T 2pzi_A 157 PVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAV 228 (681)
T ss_dssp EEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTC
T ss_pred ceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccc
Confidence 7999999999999988754 5999999999999999999999 7889999999999999875 8999999999
Q ss_pred eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD 787 (833)
Q Consensus 708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (833)
+..... ....||++|||||++.+. ++.++|||||||++|||++|..||.+... ..+
T Consensus 229 ~~~~~~------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~---------------~~~-- 284 (681)
T 2pzi_A 229 SRINSF------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYV---------------DGL-- 284 (681)
T ss_dssp EETTCC------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEEC---------------SSC--
T ss_pred hhcccC------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccc---------------ccc--
Confidence 876432 346799999999988764 48899999999999999999999863110 000
Q ss_pred ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC-HHHHHHHHH
Q 003296 788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK-MKSVLRMLL 830 (833)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-~~evl~~L~ 830 (833)
.. ..........+.+++.+||+.||++||+ ++++.+.+.
T Consensus 285 ---~~-~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~ 324 (681)
T 2pzi_A 285 ---PE-DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLT 324 (681)
T ss_dssp ---CT-TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred ---cc-cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHH
Confidence 00 1112233457889999999999999995 555555554
No 283
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=3e-38 Score=351.24 Aligned_cols=243 Identities=16% Similarity=0.120 Sum_probs=182.2
Q ss_pred hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC-CCcccceEE----------
Q 003296 556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTPLAY---------- 623 (833)
Q Consensus 556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~~~---------- 623 (833)
.|...++||+|+||.||+|++ .+|+.||||++.... .......+.|.+|+.+++.++| +|......+
T Consensus 79 ~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~-~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 79 TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTE-RPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSC-C----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eEEEecccccCCCEEEEEEEecCCCCceEEEEEecCC-CccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 355668999999999999995 589999999985222 2223446789999999999987 332221111
Q ss_pred -----------Eec-----CCceEEEEeeCCCCChhhhhh-----cCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCee
Q 003296 624 -----------VLA-----SDSAYLFYEYAPKGTLFDVLH-----GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682 (833)
Q Consensus 624 -----------~~~-----~~~~~lv~ey~~~g~L~~~l~-----~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~ii 682 (833)
+.. ....+++|+++ +|+|.++++ ......++|..++.++.|+++||+||| +.+||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcc
Confidence 111 12357777766 679999985 222346889999999999999999999 78999
Q ss_pred ecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccc----------cCCcccccCcchhhHHHH
Q 003296 683 LLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYA----------YTMRVTMAGNVYSFGVIL 752 (833)
Q Consensus 683 Hrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~S~Gvvl 752 (833)
||||||+|||++.++.+||+|||+++..... ....+| +.|||||++ .+..++.++|||||||++
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil 307 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAI 307 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHH
Confidence 9999999999999999999999999865322 245678 999999998 556689999999999999
Q ss_pred HHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296 753 LELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828 (833)
Q Consensus 753 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~ 828 (833)
|||+||+.||...... .....++... . ..+.++.+++.+||+.||++|||+.|++++
T Consensus 308 ~elltg~~Pf~~~~~~-----------~~~~~~~~~~----~----~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~ 364 (413)
T 3dzo_A 308 YWIWCADLPNTDDAAL-----------GGSEWIFRSC----K----NIPQPVRALLEGFLRYPKEDRLLPLQAMET 364 (413)
T ss_dssp HHHHHSSCCCCTTGGG-----------SCSGGGGSSC----C----CCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred HHHHHCCCCCCCcchh-----------hhHHHHHhhc----c----cCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 9999999999754321 1111111110 0 123468899999999999999999888654
No 284
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=5.9e-38 Score=339.87 Aligned_cols=249 Identities=12% Similarity=0.069 Sum_probs=187.1
Q ss_pred HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchh----hhccChhHHHHHHHHHhcCC---------CCCcccc
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKI----FQLGSHHKFDKELEVLGKLS---------NSNVMTP 620 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~----~~~~~~~~~~~E~~~l~~l~---------H~niv~~ 620 (833)
.+.|+..+.||+|+||.||+|+. +|+.||||++...... ......+.+.+|++++++++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 45688899999999999999998 7899999999533211 12233478999999999986 5555555
Q ss_pred eE-----------------EEec-------------CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 003296 621 LA-----------------YVLA-------------SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGL 670 (833)
Q Consensus 621 ~~-----------------~~~~-------------~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l 670 (833)
.+ +|.+ ++..|+|||||++|++.+.+.+ ..+++.+++.|+.|++.||
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~aL 174 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTASL 174 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHHH
Confidence 44 4443 6789999999999987777753 4589999999999999999
Q ss_pred HhhhcCCCCCeeecCCCccceeeCCCC--------------------CceeccceeeeeeCCCCCCCccccccccccccc
Q 003296 671 AFLHGFTSNPILLLDLSTRNIFLKSLK--------------------EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIP 730 (833)
Q Consensus 671 ~ylH~~~~~~iiHrdlk~~Nill~~~~--------------------~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~a 730 (833)
+|||+ +.+|+||||||+|||++.++ .+||+|||+|+.... ...+||+.|||
T Consensus 175 ~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~-------~~~~gt~~y~a 245 (336)
T 2vuw_A 175 AVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD-------GIVVFCDVSMD 245 (336)
T ss_dssp HHHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET-------TEEECCCCTTC
T ss_pred HHHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC-------CcEEEeecccC
Confidence 99993 35799999999999999887 899999999987642 23589999999
Q ss_pred cccccCCcccccCcchhhHHH-HHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHH
Q 003296 731 PEYAYTMRVTMAGNVYSFGVI-LLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAV 809 (833)
Q Consensus 731 PE~~~~~~~~~~~Dv~S~Gvv-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 809 (833)
||++.+.. +.++||||+|++ .+++++|..||.+. .|....... +..................+.++.+++.
T Consensus 246 PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~dli~ 317 (336)
T 2vuw_A 246 EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV----LWLHYLTDK---MLKQMTFKTKCNTPAMKQIKRKIQEFHR 317 (336)
T ss_dssp SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH----HHHHHHHHH---HHHTCCCSSCCCSHHHHHHHHHHHHHHH
T ss_pred hhhhcCCC-ccceehhhhhCCCCcccccccCCCcch----hhhhHHHHh---hhhhhccCcccchhhhhhcCHHHHHHHH
Confidence 99998766 899999998776 88899999999531 121110000 0000000111122234567788999999
Q ss_pred hccCCCCCCCCCHHHHH-HH
Q 003296 810 ACVSVSPEARPKMKSVL-RM 828 (833)
Q Consensus 810 ~cl~~dP~~Rps~~evl-~~ 828 (833)
+||+.| |++|++ +|
T Consensus 318 ~~L~~d-----sa~e~l~~H 332 (336)
T 2vuw_A 318 TMLNFS-----SATDLLCQH 332 (336)
T ss_dssp HGGGSS-----SHHHHHHHC
T ss_pred HHhccC-----CHHHHHhcC
Confidence 999976 999998 54
No 285
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-35 Score=325.68 Aligned_cols=311 Identities=20% Similarity=0.219 Sum_probs=219.3
Q ss_pred CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296 28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI 107 (833)
Q Consensus 28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 107 (833)
.++++++|++++|.++.+.+..|.++++|++|+|++|.|+++.+..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35677777777777777766667777777777777777777777777777777777777777777777777777777777
Q ss_pred eccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccccccccc
Q 003296 108 DLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGV 187 (833)
Q Consensus 108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~ 187 (833)
+|++|.++.+.+..|+++++|++|+|++|.+++..|..|..+++|+.|++++|.+++. +....+.|+.|++++|.+.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCSEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeeccccccccc
Confidence 7777777766555667777777777777777777777777777766666666666543 333344566667766666542
Q ss_pred CCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCC
Q 003296 188 IPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR 267 (833)
Q Consensus 188 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 267 (833)
...++|+.|++++|.+... |.. ..++|+.|++++|.+++. ..+..++
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~-~~~-------------------------~~~~L~~L~l~~n~l~~~--~~l~~l~ 248 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVV-RGP-------------------------VNVELTILKLQHNNLTDT--AWLLNYP 248 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEE-ECC-------------------------CCSSCCEEECCSSCCCCC--GGGGGCT
T ss_pred -----CCCCcceEEECCCCeeeec-ccc-------------------------ccccccEEECCCCCCccc--HHHcCCC
Confidence 1234566666666666532 111 235677777777777654 4567777
Q ss_pred CCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEcc
Q 003296 268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLR 347 (833)
Q Consensus 268 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 347 (833)
+|++|+|++|.+.+..|..+..+++|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|+|+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326 (390)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECC
Confidence 77777777777776667777777777777777777775 3555567778888888888887 456667778888888888
Q ss_pred CCccccccCccccCCCCCCEEEccCCcCCc
Q 003296 348 QNNLNGSIPNSITNMRSLIELQLGGNQLSG 377 (833)
Q Consensus 348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 377 (833)
+|+++.. + +..+++|+.|++++|++.+
T Consensus 327 ~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 327 HNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCcccee-C--chhhccCCEEEcCCCCccc
Confidence 8888754 2 6677888888888888764
No 286
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-34 Score=314.14 Aligned_cols=305 Identities=22% Similarity=0.363 Sum_probs=204.2
Q ss_pred CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
.+++|+.|++++|.+..++.|..+++|++|++++|+++.+.+ |..+++|++|+|++|.++.+ ..|..+++|++|+|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEEC
Confidence 355666777777777666666666777777777776665544 66667777777777766643 24666667777777
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296 86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS 165 (833)
Q Consensus 86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~ 165 (833)
++|.+++..+ +..+++|+.|++++|.....++ .+..+++|++|++++|.+++..+ +..+
T Consensus 118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l---------------- 176 (347)
T 4fmz_A 118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANL---------------- 176 (347)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGC----------------
T ss_pred cCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccC----------------
Confidence 7776664432 6666667777777665443333 36666667777776666654332 3333
Q ss_pred CChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296 166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL 245 (833)
Q Consensus 166 ~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L 245 (833)
+.|+.|++++|++.+..+ +..+++|+.|++++|.+++.. + +..+++|
T Consensus 177 ------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-----------------------~--~~~~~~L 223 (347)
T 4fmz_A 177 ------TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT-----------------------P--VANMTRL 223 (347)
T ss_dssp ------TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----------------------G--GGGCTTC
T ss_pred ------CCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc-----------------------h--hhcCCcC
Confidence 346677777777665433 666778888888888765321 1 4556677
Q ss_pred CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCC
Q 003296 246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWN 325 (833)
Q Consensus 246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 325 (833)
++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. +.+..+++|+.|++++|
T Consensus 224 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence 777777777775543 66777777777777777653 3567777777777777777754 34677788888888888
Q ss_pred cCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCC
Q 003296 326 SLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS 376 (833)
Q Consensus 326 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 376 (833)
.+++..|..|..+++|+.|++++|++++..| +..+++|++|++++|.|+
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8877777777888888888888888876655 777888888888888764
No 287
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-34 Score=314.28 Aligned_cols=318 Identities=24% Similarity=0.352 Sum_probs=260.5
Q ss_pred CCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccC
Q 003296 15 FSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI 94 (833)
Q Consensus 15 ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 94 (833)
+....+..+..+..+++|++|++++|.+..+. .|..+++|++|+|++|+++++.+ |..+++|++|+|++|.++..
T Consensus 29 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~- 103 (347)
T 4fmz_A 29 LQKASVTDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI- 103 (347)
T ss_dssp HTCSCTTSEECHHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred ccccccCCcccchhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-
Confidence 34455666666778899999999999998654 48889999999999999987554 89999999999999999864
Q ss_pred CccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcC
Q 003296 95 PKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFL 174 (833)
Q Consensus 95 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L 174 (833)
..|..+++|++|+|++|.+++..+ +..+++|++|++++|.....++. +..+++ |
T Consensus 104 -~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~----------------------L 157 (347)
T 4fmz_A 104 -SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTG----------------------L 157 (347)
T ss_dssp -GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTT----------------------C
T ss_pred -hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCC----------------------C
Confidence 468999999999999999986544 88999999999999965543332 444443 6
Q ss_pred CEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCC
Q 003296 175 RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNS 254 (833)
Q Consensus 175 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~ 254 (833)
++|++++|.+.+..+ +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.
T Consensus 158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-----------------------~~~--~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-----------------------ISP--LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-----------------------CGG--GGGCTTCCEEECCSSC
T ss_pred cEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-----------------------ccc--ccCCCccceeecccCC
Confidence 667777777665544 6778999999999998763 222 6678999999999999
Q ss_pred CCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccc
Q 003296 255 FTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSF 334 (833)
Q Consensus 255 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 334 (833)
+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++. +.+..+++|++|++++|.+++. ..
T Consensus 211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~ 282 (347)
T 4fmz_A 211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SV 282 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hh
Confidence 997655 8899999999999999986554 89999999999999999874 4688999999999999999875 46
Q ss_pred cccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccc
Q 003296 335 LSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFE 398 (833)
Q Consensus 335 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~ 398 (833)
+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|.........|++++|.|+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 8899999999999999999999999999999999999999998766222233368999999886
No 288
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-35 Score=340.89 Aligned_cols=312 Identities=20% Similarity=0.218 Sum_probs=241.9
Q ss_pred CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296 28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI 107 (833)
Q Consensus 28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 107 (833)
.+++++.|++++|.+..+.+..|.++++|++|+|++|.|+++.|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45788889999998888888888888999999999999988888888889999999999999988888888889999999
Q ss_pred eccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccccccccc
Q 003296 108 DLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGV 187 (833)
Q Consensus 108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~ 187 (833)
+|++|.|+++++..|+++++|++|+|++|.+++..|..|..+++|+.|++++|.+++. +...++.|+.|++++|.+.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCSEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCccccc
Confidence 9999998877777788899999999999999888888888888888888777777653 334445577777777766543
Q ss_pred CCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCC
Q 003296 188 IPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR 267 (833)
Q Consensus 188 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 267 (833)
...++|+.|++++|.++... .. ..++|+.|+|++|.+++. ..+..++
T Consensus 208 -----~~~~~L~~L~ls~n~l~~~~-----------------------~~---~~~~L~~L~L~~n~l~~~--~~l~~l~ 254 (597)
T 3oja_B 208 -----AIPIAVEELDASHNSINVVR-----------------------GP---VNVELTILKLQHNNLTDT--AWLLNYP 254 (597)
T ss_dssp -----ECCTTCSEEECCSSCCCEEE-----------------------CS---CCSCCCEEECCSSCCCCC--GGGGGCT
T ss_pred -----cCCchhheeeccCCcccccc-----------------------cc---cCCCCCEEECCCCCCCCC--hhhccCC
Confidence 22346777777777665321 11 124677777777777753 5677777
Q ss_pred CCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEcc
Q 003296 268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLR 347 (833)
Q Consensus 268 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 347 (833)
+|+.|+|++|.+.+..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|+
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECC
Confidence 78888888887777777777777888888888888775 4555667788888888888887 466677888888888888
Q ss_pred CCccccccCccccCCCCCCEEEccCCcCCcc
Q 003296 348 QNNLNGSIPNSITNMRSLIELQLGGNQLSGT 378 (833)
Q Consensus 348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 378 (833)
+|.+++.. +..+++|+.|++++|++.+.
T Consensus 333 ~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 333 HNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 88887542 66778888888888887653
No 289
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-34 Score=337.30 Aligned_cols=312 Identities=19% Similarity=0.192 Sum_probs=222.4
Q ss_pred CCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEE
Q 003296 52 ELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVL 131 (833)
Q Consensus 52 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 131 (833)
.+.+++.|++++|.++.+++..|..+++|++|+|++|.+++..|..|+.+++|+.|+|++|.|++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999999998888888999999999999999999888899999999999999999999888899999999999
Q ss_pred ECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCccc
Q 003296 132 ILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS 211 (833)
Q Consensus 132 ~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 211 (833)
+|++|.|++..+..|.++++ |++|+|++|.+.+..|..|..+++|++|+|++|.+++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~----------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPK----------------------LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTT----------------------CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred EeeCCCCCCCCHHHhccCCC----------------------CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 99999999766666666655 55666666666667777777888888888888877642
Q ss_pred CCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCC
Q 003296 212 LPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG 291 (833)
Q Consensus 212 ~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 291 (833)
+ +..+++|+.|++++|.+++. ...++|+.|++++|.+....+ .+ .+
T Consensus 187 -~-------------------------~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~-~~--~~ 232 (597)
T 3oja_B 187 -D-------------------------LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG-PV--NV 232 (597)
T ss_dssp -C-------------------------GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEEC-SC--CS
T ss_pred -C-------------------------hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccc-cc--CC
Confidence 1 22344555555555555432 233455666666665543221 11 14
Q ss_pred CCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEcc
Q 003296 292 ILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLG 371 (833)
Q Consensus 292 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 371 (833)
+|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|+
T Consensus 233 ~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence 56666666666654 2456666677777777777776666667777777777777777764 35555666677777777
Q ss_pred CCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCccccc
Q 003296 372 GNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448 (833)
Q Consensus 372 ~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 448 (833)
+|.++ .+|..+..+++|+.|+|++|+|++.. +..+++|+.|++++|++++.
T Consensus 310 ~N~l~-----------------------~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 310 HNHLL-----------------------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SSCCC-----------------------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCC-----------------------ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 66654 23444556677777777777776542 55667777788888877654
No 290
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-34 Score=318.94 Aligned_cols=310 Identities=22% Similarity=0.265 Sum_probs=273.0
Q ss_pred CCCCCCEEECCCCCCCCccc--ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296 6 GIDGLKLLNFSKNELVSLPT--FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL 83 (833)
Q Consensus 6 ~l~~L~~L~ls~N~l~~i~~--f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 83 (833)
.+++++.|++++|.+..+|. |..+++|++|+|++|.|+.+.+..|..+++|++|+|++|.++++.|..|+.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35899999999999999975 8899999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccc
Q 003296 84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS 163 (833)
Q Consensus 84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~ 163 (833)
+|++|.++...+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++. .+..+++|+.+++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999977667789999999999999999999899999999999999999999875 3667789999999999987
Q ss_pred ccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCC
Q 003296 164 GSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLE 243 (833)
Q Consensus 164 ~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~ 243 (833)
+.. ....|+.|++++|++..... . ..++|+.|++++|.+++. ..+..++
T Consensus 200 ~~~---~~~~L~~L~l~~n~l~~~~~-~--~~~~L~~L~l~~n~l~~~-------------------------~~l~~l~ 248 (390)
T 3o6n_A 200 TLA---IPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT-------------------------AWLLNYP 248 (390)
T ss_dssp EEE---CCSSCSEEECCSSCCCEEEC-C--CCSSCCEEECCSSCCCCC-------------------------GGGGGCT
T ss_pred ccC---CCCcceEEECCCCeeeeccc-c--ccccccEEECCCCCCccc-------------------------HHHcCCC
Confidence 632 23469999999999987633 2 347899999999987631 2466788
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeecc
Q 003296 244 KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNIS 323 (833)
Q Consensus 244 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 323 (833)
+|++|+|++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|++++|++++ +|..+..+++|++|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLD 326 (390)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECC
T ss_pred CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECC
Confidence 99999999999999889999999999999999999985 56677889999999999999984 56678889999999999
Q ss_pred CCcCcccCccccccCCCCCEEEccCCccccc
Q 003296 324 WNSLSGSIPSFLSNLTNLVNLNLRQNNLNGS 354 (833)
Q Consensus 324 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 354 (833)
+|.++.. + +..+++|+.|++++|+++..
T Consensus 327 ~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 327 HNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCcccee-C--chhhccCCEEEcCCCCccch
Confidence 9999865 3 67789999999999999764
No 291
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.3e-33 Score=303.23 Aligned_cols=288 Identities=20% Similarity=0.301 Sum_probs=177.9
Q ss_pred CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296 9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN 88 (833)
Q Consensus 9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 88 (833)
+++.+++++|.++.+|. .-.++|+.|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|
T Consensus 34 ~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 46677777777776664 12356777777777777666667777777777777777777666677777777777777777
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC--CCCcccccCCccCccccccccccccC
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG--RLPTSLASITTLSRFAANQNKFSGSV 166 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~l~~n~l~~~~ 166 (833)
.++. +|..+. ++|++|++++|++++..+..|.++++|++|++++|.++. ..|..+..+ +|+.|++++|++++ +
T Consensus 113 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l 187 (332)
T 2ft3_A 113 HLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-I 187 (332)
T ss_dssp CCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-C
T ss_pred cCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-c
Confidence 7763 343333 567777777777776666667777777777777777642 455555555 55555555444442 2
Q ss_pred ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCC
Q 003296 167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT 246 (833)
Q Consensus 167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~ 246 (833)
|..+. ++|++|++++|.+++ +++..|..+++|+
T Consensus 188 ~~~~~------------------------~~L~~L~l~~n~i~~-----------------------~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 188 PKDLP------------------------ETLNELHLDHNKIQA-----------------------IELEDLLRYSKLY 220 (332)
T ss_dssp CSSSC------------------------SSCSCCBCCSSCCCC-----------------------CCTTSSTTCTTCS
T ss_pred Ccccc------------------------CCCCEEECCCCcCCc-----------------------cCHHHhcCCCCCC
Confidence 22222 455555555555542 2222344555666
Q ss_pred EEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcC------CCcCcee
Q 003296 247 YLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQ------LKLLSTM 320 (833)
Q Consensus 247 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L 320 (833)
+|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+++..+..|.. ...|+.|
T Consensus 221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence 6666666666555555666666666666666665 45555566666666666666666555555543 3567788
Q ss_pred eccCCcCc--ccCccccccCCCCCEEEccCCc
Q 003296 321 NISWNSLS--GSIPSFLSNLTNLVNLNLRQNN 350 (833)
Q Consensus 321 ~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~ 350 (833)
++++|.+. +..|..|..+++|+.+++++|+
T Consensus 300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EeecCcccccccCcccccccchhhhhhccccc
Confidence 88888776 5667778888888888888774
No 292
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.7e-33 Score=299.36 Aligned_cols=289 Identities=22% Similarity=0.287 Sum_probs=199.5
Q ss_pred CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296 9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN 88 (833)
Q Consensus 9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 88 (833)
+++.++++++.++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 68899999999998875 23478999999999999888888999999999999999999888999999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC--CCCcccccCCccCccccccccccccC
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG--RLPTSLASITTLSRFAANQNKFSGSV 166 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~l~~n~l~~~~ 166 (833)
.++. +|..+. ++|+.|++++|.+++..+..|.++++|++|+|++|.++. ..+..|..+++|+.|++++|.++. +
T Consensus 111 ~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l 186 (330)
T 1xku_A 111 QLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I 186 (330)
T ss_dssp CCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred cCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-C
Confidence 9984 455444 789999999999998888889999999999999999864 666777777776666666655542 3
Q ss_pred ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCC
Q 003296 167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT 246 (833)
Q Consensus 167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~ 246 (833)
|..+. ++|++|++++|.+++. ++..|..+++|+
T Consensus 187 ~~~~~------------------------~~L~~L~l~~n~l~~~-----------------------~~~~~~~l~~L~ 219 (330)
T 1xku_A 187 PQGLP------------------------PSLTELHLDGNKITKV-----------------------DAASLKGLNNLA 219 (330)
T ss_dssp CSSCC------------------------TTCSEEECTTSCCCEE-----------------------CTGGGTTCTTCC
T ss_pred Ccccc------------------------ccCCEEECCCCcCCcc-----------------------CHHHhcCCCCCC
Confidence 33222 4455555555554422 122344455555
Q ss_pred EEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcC------CCcCcee
Q 003296 247 YLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQ------LKLLSTM 320 (833)
Q Consensus 247 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L 320 (833)
+|+|++|++++..+..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+++..+..|.. ...++.|
T Consensus 220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred EEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccce
Confidence 5555555555554445555555555555555555 44445555555555555555555554444432 2566777
Q ss_pred eccCCcCcc--cCccccccCCCCCEEEccCCc
Q 003296 321 NISWNSLSG--SIPSFLSNLTNLVNLNLRQNN 350 (833)
Q Consensus 321 ~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~ 350 (833)
++++|.+.. ..|..|..+.+++.++|++|+
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EeecCcccccccCccccccccceeEEEecccC
Confidence 777777753 456677777778888887774
No 293
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.9e-32 Score=295.98 Aligned_cols=306 Identities=22% Similarity=0.265 Sum_probs=232.2
Q ss_pred CCCCCCCCccc-ccC------CCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296 15 FSKNELVSLPT-FNG------FAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG 87 (833)
Q Consensus 15 ls~N~l~~i~~-f~~------l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 87 (833)
.+.+.+..+|. +.. ..+++.+++++|.++.+.. .+ .++|++|+|++|.|+++.|..|..+++|++|+|++
T Consensus 11 ~~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 87 (332)
T 2ft3_A 11 SGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN 87 (332)
T ss_dssp --------------CCCCSSCEEETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC
Confidence 34555666652 222 1368888998888885544 33 36888888888888888888888888888888888
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296 88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167 (833)
Q Consensus 88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 167 (833)
|.+++..|..|.++++|++|+|++|+++. +|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.++.
T Consensus 88 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--- 161 (332)
T 2ft3_A 88 NKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN--- 161 (332)
T ss_dssp SCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---
T ss_pred CccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---
Confidence 88888888888888888888888888884 444443 788888888888887766667766664444444443321
Q ss_pred hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296 168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY 247 (833)
Q Consensus 168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~ 247 (833)
.+..+..+..+ +|++|++++|.+++ +|... .++|++
T Consensus 162 -----------------~~~~~~~~~~l-~L~~L~l~~n~l~~-----------------------l~~~~---~~~L~~ 197 (332)
T 2ft3_A 162 -----------------SGFEPGAFDGL-KLNYLRISEAKLTG-----------------------IPKDL---PETLNE 197 (332)
T ss_dssp -----------------GGSCTTSSCSC-CCSCCBCCSSBCSS-----------------------CCSSS---CSSCSC
T ss_pred -----------------CCCCcccccCC-ccCEEECcCCCCCc-----------------------cCccc---cCCCCE
Confidence 12445555555 78888888887763 22221 268999
Q ss_pred EECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcC
Q 003296 248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL 327 (833)
Q Consensus 248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 327 (833)
|+|++|.+++..+..|..+++|+.|+|++|.+.+..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 999999999998899999999999999999999988889999999999999999999 6788899999999999999999
Q ss_pred cccCccccccC------CCCCEEEccCCccc--cccCccccCCCCCCEEEccCCc
Q 003296 328 SGSIPSFLSNL------TNLVNLNLRQNNLN--GSIPNSITNMRSLIELQLGGNQ 374 (833)
Q Consensus 328 ~~~~~~~~~~l------~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~ 374 (833)
++..+..|... ..|+.|++++|.+. ...|..|..+++|+.+++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 98877777653 67899999999997 6778899999999999999985
No 294
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.3e-32 Score=293.02 Aligned_cols=290 Identities=21% Similarity=0.242 Sum_probs=218.1
Q ss_pred CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003296 30 AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL 109 (833)
Q Consensus 30 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 109 (833)
.+++.++++++.++.+.. .+ .++|++|+|++|+|+++.+..|..+++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 31 c~l~~l~~~~~~l~~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCc-cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 367888888888875543 33 257888888888888777777888888888888888888777888888888888888
Q ss_pred cCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccccccc--cc
Q 003296 110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL--GV 187 (833)
Q Consensus 110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~--~~ 187 (833)
++|+++. +|..+. ++|++|++++|.+++..+..|..+++|+ .|++++|++. +.
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~----------------------~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI----------------------VVELGTNPLKSSGI 162 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC----------------------EEECCSSCCCGGGB
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCcccc----------------------EEECCCCcCCccCc
Confidence 8888874 444433 6788888888888766666666655544 4444444443 24
Q ss_pred CCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCC
Q 003296 188 IPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR 267 (833)
Q Consensus 188 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 267 (833)
.+..+..+++|++|++++|.++. ++... .++|++|++++|++++..|..|..++
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-----------------------l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-----------------------IPQGL---PPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-----------------------CCSSC---CTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred ChhhccCCCCcCEEECCCCcccc-----------------------CCccc---cccCCEEECCCCcCCccCHHHhcCCC
Confidence 55566777788888888877652 22221 26889999999999988888899999
Q ss_pred CCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccC------CCC
Q 003296 268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNL------TNL 341 (833)
Q Consensus 268 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L 341 (833)
+|+.|+|++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|... ..|
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 9999999999998877778888899999999999988 677778888999999999999987777776543 678
Q ss_pred CEEEccCCcccc--ccCccccCCCCCCEEEccCCc
Q 003296 342 VNLNLRQNNLNG--SIPNSITNMRSLIELQLGGNQ 374 (833)
Q Consensus 342 ~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~ 374 (833)
+.|++++|.+.. ..|..|..+.+++.++|++|+
T Consensus 296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cceEeecCcccccccCccccccccceeEEEecccC
Confidence 889999998863 557788888888888888874
No 295
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.3e-33 Score=297.16 Aligned_cols=121 Identities=28% Similarity=0.428 Sum_probs=73.4
Q ss_pred CCCCEEECCCCCCCC--cccccccCCCCCCEEeCcC-CcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 003296 30 AGLEVLDFSSNNLNG--NINLQFDELVSLKSLNLSK-NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL 106 (833)
Q Consensus 30 ~~L~~L~Ls~N~l~~--~~~~~f~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 106 (833)
.+++.|+|++|++++ ..|..|.++++|++|+|++ |.+.+.+|..|+.+++|++|+|++|.+++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356666666666665 5555666666666666663 6666556666666666666666666666566666666666666
Q ss_pred EeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCC
Q 003296 107 IDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASIT 150 (833)
Q Consensus 107 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 150 (833)
|+|++|.+++.+|..|+.+++|++|+|++|.+++.+|..+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 66666666655666666666666666666666555555544443
No 296
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1.1e-32 Score=294.62 Aligned_cols=249 Identities=29% Similarity=0.455 Sum_probs=137.6
Q ss_pred CCCCEEeCcCCcCCC--CCCcccCCCCCCCEEEccC-CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcE
Q 003296 54 VSLKSLNLSKNKFNG--FLPINLGKTKALEELVLSG-NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEV 130 (833)
Q Consensus 54 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 130 (833)
.+++.|+|++|.+++ .+|..|..+++|++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456666666666666 5666666666666666663 6666666666666666666666666666666666666666666
Q ss_pred EECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCC-CCCEEecccccCc
Q 003296 131 LILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHP-NLQTIDLSVNMLE 209 (833)
Q Consensus 131 L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~~L~Ls~N~l~ 209 (833)
|+|++|.+++.+|..|..+++ |++|+|++|++.+.+|..+..++ +|++|+|++|.++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~----------------------L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPN----------------------LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTT----------------------CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred EeCCCCccCCcCChHHhcCCC----------------------CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 666666666655555554444 33344444444444444444444 5555555555554
Q ss_pred ccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCC
Q 003296 210 GSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGS 289 (833)
Q Consensus 210 ~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 289 (833)
+.+|. .|..++ |++|+|++|++++..|..|..+++|+.|+|++|.+++..|
T Consensus 188 ~~~~~-----------------------~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 238 (313)
T 1ogq_A 188 GKIPP-----------------------TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG----- 238 (313)
T ss_dssp EECCG-----------------------GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----
T ss_pred ccCCh-----------------------HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-----
Confidence 33322 222233 5555555555555555555555555555555555543333
Q ss_pred CCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEE
Q 003296 290 LGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQ 369 (833)
Q Consensus 290 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 369 (833)
. +..+++|++|++++|.+++.+|..|..+++|+.|+|++|++++.+|.. ..+++|+.++
T Consensus 239 -------------------~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~ 297 (313)
T 1ogq_A 239 -------------------K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297 (313)
T ss_dssp -------------------G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGG
T ss_pred -------------------c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHH
Confidence 2 344445555555555555555555555555555555555555555543 4455555555
Q ss_pred ccCCc
Q 003296 370 LGGNQ 374 (833)
Q Consensus 370 L~~N~ 374 (833)
+++|+
T Consensus 298 l~~N~ 302 (313)
T 1ogq_A 298 YANNK 302 (313)
T ss_dssp TCSSS
T ss_pred hcCCC
Confidence 55554
No 297
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.1e-35 Score=330.91 Aligned_cols=351 Identities=19% Similarity=0.164 Sum_probs=237.0
Q ss_pred CCCCEEECCCCCCCCcc--c-ccCCCCCCEEECCCCCCCCc----ccccccCCCCCCEEeCcCCcCCCCCCccc-CCCC-
Q 003296 8 DGLKLLNFSKNELVSLP--T-FNGFAGLEVLDFSSNNLNGN----INLQFDELVSLKSLNLSKNKFNGFLPINL-GKTK- 78 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~-f~~l~~L~~L~Ls~N~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~- 78 (833)
++|+.|++++|+++..+ . |..+++|++|+|++|+++.. .+..|..+++|++|+|++|.++...+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56889999999998753 3 78899999999999999853 35678888999999999999976444332 3344
Q ss_pred ---CCCEEEccCCcCcc----cCCccccCCCCCCEEeccCCcCCccCCccc-----cCCCCCcEEECcCCcCCCCC----
Q 003296 79 ---ALEELVLSGNAFHG----EIPKGIADYRNLTLIDLSANNLSGSVPDRI-----GELSKLEVLILSANNLDGRL---- 142 (833)
Q Consensus 79 ---~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~---- 142 (833)
+|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+ ...++|++|+|++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 568889999999999999999875444333 23668999999999998743
Q ss_pred CcccccCCccCccccccccccccCChhhh-------hcCCEEeccccccccc----CCccCCCCCCCCEEecccccCccc
Q 003296 143 PTSLASITTLSRFAANQNKFSGSVPGGIT-------RFLRNLDLSYNKLLGV----IPIDLLSHPNLQTIDLSVNMLEGS 211 (833)
Q Consensus 143 p~~~~~l~~L~~l~l~~n~l~~~~p~~~~-------~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~Ls~N~l~~~ 211 (833)
+..+..+++|+.|++++|.+++..+..+. ..|+.|+|++|++... ++..+..+++|++|+|++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 55566677888888888877654333332 2567777777766542 344455566666777766665432
Q ss_pred CCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCC----CCccccCCCCCcEEEccCCccCCCChhhh
Q 003296 212 LPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM----IPQQLGSCRSLTLLNLAQNELNGSLPIQL 287 (833)
Q Consensus 212 ~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 287 (833)
... .+.+..+..+++|++|+|++|.++.. ++..+..+++|++|+|++|.+.+..+..+
T Consensus 243 ~~~------------------~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 243 GMA------------------ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HHH------------------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred HHH------------------HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 100 01122333567777888887777753 45556667777777777777754333333
Q ss_pred C-----CCCCCcEEEccCCcCCCc----CchhhcCCCcCceeeccCCcCcccCcccccc-----CCCCCEEEccCCcccc
Q 003296 288 G-----SLGILQVMNLQLNKLSGE----IPSQFSQLKLLSTMNISWNSLSGSIPSFLSN-----LTNLVNLNLRQNNLNG 353 (833)
Q Consensus 288 ~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~ 353 (833)
. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|+|++|++++
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 2 224677777777776654 3445556667777777777666544433332 4566677777766664
Q ss_pred ----ccCccccCCCCCCEEEccCCcCC
Q 003296 354 ----SIPNSITNMRSLIELQLGGNQLS 376 (833)
Q Consensus 354 ----~~p~~~~~l~~L~~L~L~~N~l~ 376 (833)
.+|..+..+++|++|++++|+++
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred hhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 55666666666666666666654
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.7e-34 Score=322.92 Aligned_cols=383 Identities=20% Similarity=0.167 Sum_probs=226.2
Q ss_pred CCCCCEEECCCCCCCCccccc-ccCCCCCCEEeCcCCcCCCC----CCcccCCCCCCCEEEccCCcCcccCCccc-cCCC
Q 003296 29 FAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKFNGF----LPINLGKTKALEELVLSGNAFHGEIPKGI-ADYR 102 (833)
Q Consensus 29 l~~L~~L~Ls~N~l~~~~~~~-f~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~ 102 (833)
+++|++|||++|+++...... |..+++|++|+|++|.++.. ++..+..+++|++|+|++|.++...+..+ ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 356889999999998655444 78899999999999998742 35667788999999999999876444333 3354
Q ss_pred ----CCCEEeccCCcCCc----cCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcC
Q 003296 103 ----NLTLIDLSANNLSG----SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFL 174 (833)
Q Consensus 103 ----~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L 174 (833)
+|++|+|++|.|+. .++..|..+++|++|+|++|.++...+..+...- . .....|
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l----------------~-~~~~~L 144 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL----------------L-DPQCRL 144 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH----------------T-STTCCC
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH----------------h-cCCCcc
Confidence 69999999999874 4578888899999999999887654333322100 0 001136
Q ss_pred CEEecccccccccC----CccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEEC
Q 003296 175 RNLDLSYNKLLGVI----PIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL 250 (833)
Q Consensus 175 ~~L~Ls~N~l~~~~----~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L 250 (833)
++|+|++|++.+.. +..+..+++|++|++++|.+++..+..+. .......++|++|+|
T Consensus 145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~------------------~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC------------------QGLKDSPCQLEALKL 206 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH------------------HHHHHSCCCCCEEEC
T ss_pred eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH------------------HHHhcCCCCceEEEc
Confidence 66666666665432 33445567777788777776543211110 001112345666666
Q ss_pred CCCCCCCC----CCccccCCCCCcEEEccCCccCCCC-----hhhhCCCCCCcEEEccCCcCCCc----CchhhcCCCcC
Q 003296 251 DNNSFTGM----IPQQLGSCRSLTLLNLAQNELNGSL-----PIQLGSLGILQVMNLQLNKLSGE----IPSQFSQLKLL 317 (833)
Q Consensus 251 ~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L 317 (833)
++|.+++. ++..+..+++|++|+|++|.+.+.. +..+..+++|+.|++++|.++.. ++..+..+++|
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 286 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc
Confidence 66666543 3444555666666666666654321 12223456666666666666543 34555556666
Q ss_pred ceeeccCCcCcccCcccccc-----CCCCCEEEccCCccccc----cCccccCCCCCCEEEccCCcCCccCCCCcc----
Q 003296 318 STMNISWNSLSGSIPSFLSN-----LTNLVNLNLRQNNLNGS----IPNSITNMRSLIELQLGGNQLSGTIPMMPP---- 384 (833)
Q Consensus 318 ~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~---- 384 (833)
++|++++|.+.+..+..+.. .++|+.|+|++|.+++. ++..+..+++|++|++++|.+++..+....
T Consensus 287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 366 (461)
T 1z7x_W 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 366 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence 66666666665433333322 24666666666666543 344555566666666666666532111000
Q ss_pred ---cccceeecccccccc----chhhhhccCCCCCEEecccCcCccccchhc-----cCCCCCCeeeCcCCccc
Q 003296 385 ---RLQIALNLSSNLFEG----PIPTTFARLNGLEVLDLSNNRFSGEIPQLL-----AQMPTLTQLLLTNNQLS 446 (833)
Q Consensus 385 ---~~~~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~ls~N~l~ 446 (833)
...+.|++++|.+++ .+|..+..+++|++|++++|++++.-...+ ....+|+.|++.++.+.
T Consensus 367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 112344455555543 456666677777777777777765422111 12335666666655543
No 299
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=284.66 Aligned_cols=282 Identities=20% Similarity=0.221 Sum_probs=172.4
Q ss_pred CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296 8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG 87 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 87 (833)
+.....++++|.++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp CTTSEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCeEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 444557777777777764 2335777777777777777766777777777777777777777777777777777777777
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCC-cCCCCCCcccccCCccCcccccccccccc
Q 003296 88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSAN-NLDGRLPTSLASITTLSRFAANQNKFSGS 165 (833)
Q Consensus 88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~l~l~~n~l~~~ 165 (833)
|++++..+..|.++++|++|+|++|+++++.+ ..|..+++|++|++++| .++...+..|..+++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-------------- 175 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-------------- 175 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE--------------
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC--------------
Confidence 77776555557777777777777777775444 46777777777777777 355544555554444
Q ss_pred CChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296 166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL 245 (833)
Q Consensus 166 ~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L 245 (833)
|++|++++|++.+..|..+..+++|++|++++|.++ .++...+..+++|
T Consensus 176 --------L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~~~~L 224 (353)
T 2z80_A 176 --------LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-----------------------LLLEIFVDVTSSV 224 (353)
T ss_dssp --------EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-----------------------THHHHHHHHTTTE
T ss_pred --------CCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-----------------------cchhhhhhhcccc
Confidence 344444455555555555555566666666665543 1222233345555
Q ss_pred CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCC----cCchhhcCCCcCceee
Q 003296 246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSG----EIPSQFSQLKLLSTMN 321 (833)
Q Consensus 246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~ 321 (833)
+.|++++|.+++..+..+.. ......++.++++++.+.+ .+|..+..+++|++|+
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~ 283 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283 (353)
T ss_dssp EEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred cEEECCCCcccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence 66666666555443332211 0112233444444444433 2455666777777777
Q ss_pred ccCCcCcccCccccccCCCCCEEEccCCccccccC
Q 003296 322 ISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIP 356 (833)
Q Consensus 322 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 356 (833)
+++|+++...+..|..+++|++|+|++|++.+..|
T Consensus 284 Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 77777774333345677777777777777765543
No 300
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.97 E-value=3.5e-32 Score=312.55 Aligned_cols=190 Identities=15% Similarity=0.054 Sum_probs=133.9
Q ss_pred ccccCcccEEEEEEc-CCCceEEEEEccccc------hhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEE
Q 003296 562 VELKTRFSTYYKAVM-PSGMSYFIKKLNWSD------KIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 562 ~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~------~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv 633 (833)
..+.|++|.++++.. -.|+.||||++.... ........++|.+|+++|+++ .|+||+++++++++++..|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 455677777666553 369999999995321 111223456799999999999 699999999999999999999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
|||++||+|.++|.. .+.++.. +|+.||+.||+|+| +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus 321 MEyv~G~~L~d~i~~--~~~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 321 MEKLPGRLLSDMLAA--GEEIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp EECCCSEEHHHHHHT--TCCCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred EecCCCCcHHHHHHh--CCCCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 999999999999986 3456654 48899999999999 889999999999999999999999999999976543
Q ss_pred CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcc
Q 003296 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAV 762 (833)
Q Consensus 714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~ 762 (833)
.. ...+.+||++|||||++.+ .+..++|+||+|++++++.++..|+
T Consensus 393 ~~--~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~ 438 (569)
T 4azs_A 393 CS--WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW 438 (569)
T ss_dssp -C--CSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred Cc--cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence 32 3356789999999999875 5678899999999998887765544
No 301
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.2e-30 Score=273.55 Aligned_cols=249 Identities=24% Similarity=0.230 Sum_probs=172.9
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCC--CcccCCCCCCCEEEccC
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFL--PINLGKTKALEELVLSG 87 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~ 87 (833)
-+.++++++.++.+|. .-.++|++|+|++|+|+.+.+..|.++++|++|+|++|.|+... |..+..+++|++|+|++
T Consensus 9 ~~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CCEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3689999999999985 33478999999999999888888999999999999999998442 56677789999999999
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296 88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV 166 (833)
Q Consensus 88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~ 166 (833)
|.++ .+|..+..+++|++|+|++|++++..+ ..|..+++|++|+|++|.+++..+..|..+++|+
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------------- 153 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE------------- 153 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC-------------
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC-------------
Confidence 9988 456678889999999999999887665 6788888999999998888877777666665544
Q ss_pred ChhhhhcCCEEecccccccc-cCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296 167 PGGITRFLRNLDLSYNKLLG-VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL 245 (833)
Q Consensus 167 p~~~~~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L 245 (833)
+|+|++|++.+ ..|..+..+++|++|+|++|.+++..| ..|..+++|
T Consensus 154 ---------~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L 201 (306)
T 2z66_A 154 ---------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-----------------------TAFNSLSSL 201 (306)
T ss_dssp ---------EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-----------------------TTTTTCTTC
T ss_pred ---------EEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-----------------------HHhcCCCCC
Confidence 44444444443 345555566666666666666553322 233445555
Q ss_pred CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCC-CCcEEEccCCcCCC
Q 003296 246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG-ILQVMNLQLNKLSG 305 (833)
Q Consensus 246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~ 305 (833)
++|+|++|++++..+..+..+++|+.|+|++|++.+..|..+..++ +|+.|++++|.+++
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 5555555555555444555555555555555555555555554442 45555555555543
No 302
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.7e-29 Score=280.00 Aligned_cols=248 Identities=19% Similarity=0.191 Sum_probs=203.3
Q ss_pred CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296 9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN 88 (833)
Q Consensus 9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 88 (833)
..+.++++++.++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 46789999999999985 33478999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcC-CcCCCCCCcccccCCccCccccccccccccCC
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSA-NNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 167 (833)
.|++..+..|..+++|++|+|++|+|+.+.+..|.++++|++|+|++ |.++...+..|..+++
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~---------------- 197 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN---------------- 197 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT----------------
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC----------------
Confidence 99988888899999999999999999988888999999999999998 4555444445666655
Q ss_pred hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296 168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY 247 (833)
Q Consensus 168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~ 247 (833)
|++|+|++|++.+. | .+..+++|+.|+|++|.+++ +++..|..+++|+.
T Consensus 198 ------L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 198 ------LKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE-----------------------IRPGSFHGLSSLKK 246 (452)
T ss_dssp ------CCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE-----------------------ECGGGGTTCTTCCE
T ss_pred ------CCEEECCCCccccc-c-cccccccccEEECcCCcCcc-----------------------cCcccccCccCCCE
Confidence 45555555555543 2 36667788888888887764 33345677788888
Q ss_pred EECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCC
Q 003296 248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS 304 (833)
Q Consensus 248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 304 (833)
|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 888888888877888888888888888888888777777778888888888888765
No 303
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=276.39 Aligned_cols=281 Identities=21% Similarity=0.229 Sum_probs=184.3
Q ss_pred CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296 28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI 107 (833)
Q Consensus 28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 107 (833)
.++.....|+++|+++.++.. +. ++|++|+|++|+|+++.+..|..+++|++|+|++|.+++..|..|.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSG-LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTT-CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccccccc-cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 345556678888888765443 32 478888888888887777677888888888888888877777778888888888
Q ss_pred eccCCcCCccCCccccCCCCCcEEECcCCcCCCCCC-cccccCCccCccccccccccccCChhhhhcCCEEecccccccc
Q 003296 108 DLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP-TSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLG 186 (833)
Q Consensus 108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~ 186 (833)
+|++|+|++..+..|+++++|++|+|++|.+++..+ ..|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~--------------------------------------- 146 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS--------------------------------------- 146 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCT---------------------------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhc---------------------------------------
Confidence 888888876655567777788888887777764332 2333
Q ss_pred cCCccCCCCCCCCEEeccccc-CcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccC
Q 003296 187 VIPIDLLSHPNLQTIDLSVNM-LEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGS 265 (833)
Q Consensus 187 ~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 265 (833)
.+++|++|++++|. +. .+++..|..+++|++|++++|++++..|..+..
T Consensus 147 -------~l~~L~~L~l~~n~~~~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 147 -------HLTKLQILRVGNMDTFT-----------------------KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp -------TCTTCCEEEEEESSSCC-----------------------EECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred -------cCCCCcEEECCCCcccc-----------------------ccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 33444444444442 21 112223444455555555555555555555555
Q ss_pred CCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhh---cCCCcCceeeccCCcCcc----cCccccccC
Q 003296 266 CRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQF---SQLKLLSTMNISWNSLSG----SIPSFLSNL 338 (833)
Q Consensus 266 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~----~~~~~~~~l 338 (833)
+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+ .....++.+++++|.+++ .+|..+..+
T Consensus 197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 5555555555555543222233345555555555555555443332 235668888898888876 467788999
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCC
Q 003296 339 TNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP 380 (833)
Q Consensus 339 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 380 (833)
++|+.|+|++|+++...+..|..+++|++|+|++|++.+..|
T Consensus 277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999999999999995544557999999999999999987654
No 304
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.8e-29 Score=264.96 Aligned_cols=225 Identities=21% Similarity=0.209 Sum_probs=162.3
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 89 (833)
-+.++++++.++.+|. ...++|++|+|++|+|+++.+..|..+++|++|+|++|.|+++.|..|..+++|++|+|++|.
T Consensus 13 ~~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp SCEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred CeEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 4789999999999985 346789999999999999888889999999999999999998888999999999999999997
Q ss_pred -CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCCh
Q 003296 90 -FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG 168 (833)
Q Consensus 90 -l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~ 168 (833)
++...|..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------- 154 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN----------------- 154 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------------
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC-----------------
Confidence 88777888999999999999999998888888899999999999998888655555544443
Q ss_pred hhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEE
Q 003296 169 GITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYL 248 (833)
Q Consensus 169 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L 248 (833)
|+.|+|++|++.+..+..|..+++|++|+|++|.+++..| ..|..+++|+.|
T Consensus 155 -----L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L 206 (285)
T 1ozn_A 155 -----LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-----------------------HAFRDLGRLMTL 206 (285)
T ss_dssp -----CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----------------------TTTTTCTTCCEE
T ss_pred -----ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-----------------------hHccCcccccEe
Confidence 3444444444444444444555555555555555443221 233444555555
Q ss_pred ECCCCCCCCCCCccccCCCCCcEEEccCCccC
Q 003296 249 ELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN 280 (833)
Q Consensus 249 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 280 (833)
+|++|++++..+..+..+++|+.|+|++|++.
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 55555555444444555555555555555544
No 305
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=277.47 Aligned_cols=248 Identities=20% Similarity=0.185 Sum_probs=201.4
Q ss_pred CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296 9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN 88 (833)
Q Consensus 9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 88 (833)
..+.++++++.++.+|. .-.++++.|+|++|+|+.+.+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 46789999999999985 33478999999999999999999999999999999999999988899999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCC-cCCCCCCcccccCCccCccccccccccccCC
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSAN-NLDGRLPTSLASITTLSRFAANQNKFSGSVP 167 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 167 (833)
+|+.+.+..|..+++|++|+|++|.|+.+.+..|.++++|++|+|++| .++...+..|.++++|+
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~-------------- 188 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR-------------- 188 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC--------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC--------------
Confidence 999888888999999999999999999888889999999999999984 45544455666666654
Q ss_pred hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296 168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY 247 (833)
Q Consensus 168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~ 247 (833)
+|+|++|+++.+ | .+..+++|+.|+|++|.+++. ++..|..+++|+.
T Consensus 189 --------~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-----------------------~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 189 --------YLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAI-----------------------RPGSFQGLMHLQK 235 (440)
T ss_dssp --------EEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEE-----------------------CTTTTTTCTTCCE
T ss_pred --------eecCCCCcCccc-c-ccCCCcccCEEECCCCccCcc-----------------------ChhhhccCccCCE
Confidence 455555555432 2 356677888888888877643 2345667778888
Q ss_pred EECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCC
Q 003296 248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS 304 (833)
Q Consensus 248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 304 (833)
|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 888888888777777888888888888888888777777777888888888888765
No 306
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.8e-29 Score=264.42 Aligned_cols=250 Identities=22% Similarity=0.244 Sum_probs=172.3
Q ss_pred CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCccc--CCccccCCCCCCEEec
Q 003296 32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE--IPKGIADYRNLTLIDL 109 (833)
Q Consensus 32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L 109 (833)
-+.++.+++.++.+.... .++|++|+|++|+|+.+.+..|..+++|++|+|++|.++.. .|..+..+++|++|+|
T Consensus 9 ~~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 357888888888665432 26888999999998877777788888999999999888743 3667777888888888
Q ss_pred cCCcCCccCCccccCCCCCcEEECcCCcCCCCCC-cccccCCccCccccccccccccCChhhhhcCCEEecccccccccC
Q 003296 110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLP-TSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVI 188 (833)
Q Consensus 110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~ 188 (833)
++|.++. +|..|..+++|++|+|++|.+++..+ ..+..+++ |++|++++|++.+..
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~----------------------L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN----------------------LIYLDISHTHTRVAF 142 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT----------------------CCEEECTTSCCEECS
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC----------------------CCEEECCCCcCCccc
Confidence 8888874 56668888888888888888875543 33333332 555666666666556
Q ss_pred CccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCC
Q 003296 189 PIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRS 268 (833)
Q Consensus 189 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 268 (833)
+..+..+++|++|++++|.+++. ..+..|..+++|++|+|++|++++..|..|..+++
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQEN----------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGG----------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcccCcCCCEEECCCCccccc----------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 66666667777777777766531 11234556677777777777777766777777777
Q ss_pred CcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCC-cCceeeccCCcCcc
Q 003296 269 LTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLK-LLSTMNISWNSLSG 329 (833)
Q Consensus 269 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~ 329 (833)
|+.|+|++|.+.+..+..+..+++|+.|++++|.+++..|..+..++ +|++|++++|.+++
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 77777777777665555566666666666666666666665555553 56666666666554
No 307
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.5e-28 Score=256.51 Aligned_cols=254 Identities=21% Similarity=0.204 Sum_probs=184.2
Q ss_pred CEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCC
Q 003296 33 EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSAN 112 (833)
Q Consensus 33 ~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 112 (833)
+.++.+++.++.+.. .+ .++|++|+|++|.|+++.+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT-TC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc-CC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678888888886543 22 468899999999998888888888889999999999888888888888889999999988
Q ss_pred c-CCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCcc
Q 003296 113 N-LSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPID 191 (833)
Q Consensus 113 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~ 191 (833)
. ++...|..|..+++|++|+|++|.+++..|..|..+++ |++|+|++|++.+..+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA----------------------LQYLYLQDNALQALPDDT 148 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT----------------------CCEEECCSSCCCCCCTTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC----------------------CCEEECCCCcccccCHhH
Confidence 7 77777888888888888888888888776666665554 455566666666555555
Q ss_pred CCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcE
Q 003296 192 LLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL 271 (833)
Q Consensus 192 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 271 (833)
|..+++|++|+|++|.+++ +++..|..+++|++|+|++|++++..|..|..+++|+.
T Consensus 149 ~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISS-----------------------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp TTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred hccCCCccEEECCCCcccc-----------------------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccE
Confidence 6677777777777777653 33344666778888888888888777777878888888
Q ss_pred EEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCcccc
Q 003296 272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFL 335 (833)
Q Consensus 272 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 335 (833)
|++++|.+++..+..+..+++|+.|++++|.+....+.. .-...++.+..+.+.+....|..+
T Consensus 206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred eeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 888888887766666777777777777777776433321 111223344455555555555444
No 308
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.2e-27 Score=269.90 Aligned_cols=229 Identities=23% Similarity=0.239 Sum_probs=143.7
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccc
Q 003296 79 ALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAAN 158 (833)
Q Consensus 79 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~ 158 (833)
+|++|+|++|.|+++.|..|.++++|+.|+|++|+|+++.+..|.++++|++|+|++|.|++..+..|..+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------- 148 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK------- 148 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT-------
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC-------
Confidence 4444444444444444444444445555555555444444444445555555555555444443333433333
Q ss_pred cccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccc
Q 003296 159 QNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSAT 238 (833)
Q Consensus 159 ~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~ 238 (833)
|++|+|++|++..+.+..|..+++|+.|+|++|... +.++...
T Consensus 149 ---------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l----------------------~~i~~~~ 191 (452)
T 3zyi_A 149 ---------------LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL----------------------EYISEGA 191 (452)
T ss_dssp ---------------CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC----------------------CEECTTT
T ss_pred ---------------CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc----------------------cccChhh
Confidence 233333333333333444555666666666663321 1233445
Q ss_pred cCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCc
Q 003296 239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318 (833)
Q Consensus 239 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 318 (833)
|..+++|++|+|++|++++. | .+..+++|+.|+|++|.+.+..|..|..+++|+.|++++|++++..+..|..+++|+
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 66677777777777777754 2 467777788888888887777777788888888888888888877788888888888
Q ss_pred eeeccCCcCcccCccccccCCCCCEEEccCCcccc
Q 003296 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG 353 (833)
Q Consensus 319 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 353 (833)
.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 88888888887777788888888999999888763
No 309
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=268.48 Aligned_cols=248 Identities=23% Similarity=0.252 Sum_probs=149.5
Q ss_pred CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296 32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA 111 (833)
Q Consensus 32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 111 (833)
...++.++++++.++.. +. ++++.|+|++|+|+++.+..|.++++|++|+|++|.|+++.+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~-~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG-IS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSC-CC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCC-CC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34555555555543322 21 4555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCcc
Q 003296 112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPID 191 (833)
Q Consensus 112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~ 191 (833)
|+|+.+.+..|..+++|++|+|++|.|+. ..+..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~----------------------------------------------~~~~~ 155 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIES----------------------------------------------IPSYA 155 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCE----------------------------------------------ECTTT
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccc----------------------------------------------cCHHH
Confidence 55554444455555555555555555543 33334
Q ss_pred CCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcE
Q 003296 192 LLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL 271 (833)
Q Consensus 192 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 271 (833)
|..+++|++|+|++|+..+ .++...|..+++|++|+|++|+++.. | .+..+++|+.
T Consensus 156 ~~~l~~L~~L~l~~~~~l~----------------------~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~ 211 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLS----------------------YISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDE 211 (440)
T ss_dssp TTTCTTCCEEECCCCTTCC----------------------EECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCE
T ss_pred hhhCcccCEeCCCCCCCcc----------------------eeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCE
Confidence 4455555555555533211 23334455666666666666666643 2 3566666777
Q ss_pred EEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCcc
Q 003296 272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL 351 (833)
Q Consensus 272 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 351 (833)
|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 77777777666666677777777777777777777777777778888888888888877777777888888888888887
Q ss_pred c
Q 003296 352 N 352 (833)
Q Consensus 352 ~ 352 (833)
.
T Consensus 292 ~ 292 (440)
T 3zyj_A 292 N 292 (440)
T ss_dssp E
T ss_pred c
Confidence 5
No 310
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=5.1e-27 Score=271.31 Aligned_cols=269 Identities=26% Similarity=0.291 Sum_probs=201.2
Q ss_pred CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296 8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG 87 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 87 (833)
.+++.|+|++|.|+.+|... .++|+.|+|++|+|+.+.+ .+++|++|+|++|+|+++++ .+++|++|+|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhh-CCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcC
Confidence 35889999999999988522 2789999999999986654 57899999999999986443 678899999999
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296 88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167 (833)
Q Consensus 88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 167 (833)
|.++++. . .+++|+.|+|++|+|++ +|.. +++|++|+|++|.+++. |.. +.+
T Consensus 111 N~l~~l~-~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~~---~~~---------------- 162 (622)
T 3g06_A 111 NPLTHLP-A---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PAL---PSE---------------- 162 (622)
T ss_dssp CCCCCCC-C---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CCC---CTT----------------
T ss_pred CcCCCCC-C---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CCc---cCC----------------
Confidence 9998643 3 57889999999999986 4433 48899999999988753 321 233
Q ss_pred hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296 168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY 247 (833)
Q Consensus 168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~ 247 (833)
|+.|++++|+++++ | ..+++|+.|++++|.+++ +|. ..++|+.|++++|.+.. ++. .+++|+.
T Consensus 163 ------L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~-~~~~L~~L~L~~N~l~~-l~~----~~~~L~~ 225 (622)
T 3g06_A 163 ------LCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT-LPSELYKLWAYNNRLTS-LPA----LPSGLKE 225 (622)
T ss_dssp ------CCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSS-CCC----CCTTCCE
T ss_pred ------CCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC-ccchhhEEECcCCcccc-cCC----CCCCCCE
Confidence 55555555555542 2 234566666666666664 332 23566667776666543 442 3478999
Q ss_pred EECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcC
Q 003296 248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL 327 (833)
Q Consensus 248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 327 (833)
|+|++|+++++ | ..+++|+.|+|++|.|+. +|. .+++|+.|+|++|+|+ .+|..|..+++|+.|+|++|.+
T Consensus 226 L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 226 LIVSGNRLTSL-P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp EECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred EEccCCccCcC-C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 99999999864 4 456889999999999984 454 5688999999999999 6688899999999999999999
Q ss_pred cccCccccccCC
Q 003296 328 SGSIPSFLSNLT 339 (833)
Q Consensus 328 ~~~~~~~~~~l~ 339 (833)
++..|..+..++
T Consensus 297 ~~~~~~~l~~L~ 308 (622)
T 3g06_A 297 SERTLQALREIT 308 (622)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCcCHHHHHhcc
Confidence 988888777654
No 311
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.3e-29 Score=268.46 Aligned_cols=264 Identities=22% Similarity=0.216 Sum_probs=166.7
Q ss_pred CCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc
Q 003296 9 GLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS 86 (833)
Q Consensus 9 ~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 86 (833)
.++.++++.+.+..++ .+..+++|++|||++|+|+++.+..|.++++|++|+|++|++++..| |..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 3556666776666542 25666778888888888887777778888888888888888876544 7778888888888
Q ss_pred CCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296 87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV 166 (833)
Q Consensus 87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~ 166 (833)
+|.+++.. ..++|+.|++++|++++..+.. +++|++|+|++|.+++..+..+..+++|
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L-------------- 146 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRV-------------- 146 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSE--------------
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCC--------------
Confidence 88777533 2367788888888777655443 5667777777777776666666555443
Q ss_pred ChhhhhcCCEEecccccccccCCccCC-CCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296 167 PGGITRFLRNLDLSYNKLLGVIPIDLL-SHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL 245 (833)
Q Consensus 167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L 245 (833)
++|+|++|++.+..+..+. .+++|++|+|++|.+++. +. ...+++|
T Consensus 147 --------~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~--~~~l~~L 193 (317)
T 3o53_A 147 --------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-----------------------KG--QVVFAKL 193 (317)
T ss_dssp --------EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-----------------------EC--CCCCTTC
T ss_pred --------CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-----------------------cc--ccccccC
Confidence 3444444444444443332 456666666666665532 11 1125666
Q ss_pred CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCC-CcCchhhcCCCcCceeeccC
Q 003296 246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS-GEIPSQFSQLKLLSTMNISW 324 (833)
Q Consensus 246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~ 324 (833)
++|+|++|++++..+ .+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+. +..|..+..++.|+.|++++
T Consensus 194 ~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 194 KTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 666666666665433 3666666666666666666 34555666666666666666666 55556666666666666663
Q ss_pred -CcCcccC
Q 003296 325 -NSLSGSI 331 (833)
Q Consensus 325 -N~l~~~~ 331 (833)
+.+.+..
T Consensus 272 ~~~l~~~~ 279 (317)
T 3o53_A 272 VKKLTGQN 279 (317)
T ss_dssp HHHHHSSS
T ss_pred chhccCCc
Confidence 3344433
No 312
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.4e-27 Score=254.78 Aligned_cols=234 Identities=21% Similarity=0.272 Sum_probs=128.8
Q ss_pred CCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEEC
Q 003296 54 VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLIL 133 (833)
Q Consensus 54 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 133 (833)
.+++.|+|++|.|+ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|+++++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 44444455554444 23333444455555555555554 44444555555555555555554 34444555555555555
Q ss_pred cCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCC
Q 003296 134 SANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLP 213 (833)
Q Consensus 134 s~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p 213 (833)
++|++.+.+|..+..... .+.+ .-+..|++|+|++|++. .+|..+..+++|++|+|++|.+++
T Consensus 158 ~~n~~~~~~p~~~~~~~~-----------~~~~--~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~--- 220 (328)
T 4fcg_A 158 RACPELTELPEPLASTDA-----------SGEH--QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA--- 220 (328)
T ss_dssp EEETTCCCCCSCSEEEC------------CCCE--EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC---
T ss_pred CCCCCccccChhHhhccc-----------hhhh--ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc---
Confidence 555555445444432100 0000 00223555555555555 445556666667777776666552
Q ss_pred CCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCC
Q 003296 214 QNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGIL 293 (833)
Q Consensus 214 ~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 293 (833)
+++ .|..+++|++|+|++|.+.+.+|..|+.+++|+.|+|++|.+.+.+|..+..+++|
T Consensus 221 --------------------l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 221 --------------------LGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp --------------------CCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred --------------------Cch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 111 24556666666666666666666666666666666666666666666666666666
Q ss_pred cEEEccCCcCCCcCchhhcCCCcCceeeccCCcCc
Q 003296 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS 328 (833)
Q Consensus 294 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 328 (833)
+.|++++|.+.+.+|..+..+++|+.+++..|.+.
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66666666666666666777777777766665544
No 313
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3e-27 Score=254.09 Aligned_cols=233 Identities=20% Similarity=0.264 Sum_probs=121.8
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccc
Q 003296 78 KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAA 157 (833)
Q Consensus 78 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l 157 (833)
.++++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+..+++|+.|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 44555555555555 44445555555555555555555 45555555555555555555555 44555555555444444
Q ss_pred ccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCcc
Q 003296 158 NQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSA 237 (833)
Q Consensus 158 ~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~ 237 (833)
++|++.+.+|..+.. .+ .+..+..+++|++|+|++|.++ . +| .
T Consensus 158 ~~n~~~~~~p~~~~~----~~---------~~~~~~~l~~L~~L~L~~n~l~-~----------------------lp-~ 200 (328)
T 4fcg_A 158 RACPELTELPEPLAS----TD---------ASGEHQGLVNLQSLRLEWTGIR-S----------------------LP-A 200 (328)
T ss_dssp EEETTCCCCCSCSEE----EC----------CCCEEESTTCCEEEEEEECCC-C----------------------CC-G
T ss_pred CCCCCccccChhHhh----cc---------chhhhccCCCCCEEECcCCCcC-c----------------------ch-H
Confidence 444444333322211 00 0112233555555555555543 1 11 1
Q ss_pred ccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcC
Q 003296 238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL 317 (833)
Q Consensus 238 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 317 (833)
.|..+++|++|+|++|++++ +|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|
T Consensus 201 ~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 24445555555555555554 23345555555555555555555555555555555555555555555555555555555
Q ss_pred ceeeccCCcCcccCccccccCCCCCEEEccCCcc
Q 003296 318 STMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL 351 (833)
Q Consensus 318 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 351 (833)
++|+|++|++.+.+|..+..+++|+.+++..|.+
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 5555555555555555555555555555555444
No 314
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.7e-29 Score=269.13 Aligned_cols=260 Identities=20% Similarity=0.196 Sum_probs=158.7
Q ss_pred CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003296 30 AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL 109 (833)
Q Consensus 30 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 109 (833)
.+++.++++.+++.......|..+++|++|+|++|+|+++.|..|..+++|++|+|++|.+++..+ |..+++|++|+|
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 345667888888876666777778888888888888888777788888888888888888876554 788888888888
Q ss_pred cCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCC
Q 003296 110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189 (833)
Q Consensus 110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~ 189 (833)
++|+|++.. ..++|++|++++|.+++..+.. ++.|+.|++++|++.+..+
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~-------------------------~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR-------------------------GQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC-------------------------CSSCEEEECCSSCCCSGGG
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc-------------------------cCCCCEEECCCCCCCCccc
Confidence 888877533 2377788888877776433221 1225666666666666666
Q ss_pred ccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCC
Q 003296 190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSL 269 (833)
Q Consensus 190 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 269 (833)
..+..+++|++|+|++|.+++..+ ...+..+++|++|+|++|.+++..+ ...+++|
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~----------------------~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L 193 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNF----------------------AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKL 193 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEG----------------------GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTC
T ss_pred hhhhccCCCCEEECCCCCCCcccH----------------------HHHhhccCcCCEEECCCCcCccccc--ccccccC
Confidence 566666666667666666653211 1112345667777777777665422 2235666
Q ss_pred cEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCc-ccCccccccCCCCCEEEcc
Q 003296 270 TLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS-GSIPSFLSNLTNLVNLNLR 347 (833)
Q Consensus 270 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~ 347 (833)
++|+|++|++++. |..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.+. +.+|..+..+++|+.|+++
T Consensus 194 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 194 KTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 6666666665532 2224444445555555554442 3333444444444444444444 3334444444444444444
No 315
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2e-26 Score=266.31 Aligned_cols=263 Identities=24% Similarity=0.281 Sum_probs=172.5
Q ss_pred CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003296 30 AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL 109 (833)
Q Consensus 30 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 109 (833)
.+++.|++++|+|+.+. ..+. ++|++|+|++|+|+.+.+ .+++|++|+|++|+|++ +|. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~~lp-~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLP-DCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCCC-SCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCccC-hhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 35888999999988554 3443 789999999999886443 46888899999988885 444 6788888888
Q ss_pred cCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCC
Q 003296 110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189 (833)
Q Consensus 110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~ 189 (833)
++|+|+++.+ .+++|+.|+|++|+|++ +|..+ +.|++|+|++|++.++ |
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~l-------------------------~~L~~L~Ls~N~l~~l-~ 157 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVLP-------------------------PGLQELSVSDNQLASL-P 157 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCCC-------------------------TTCCEEECCSSCCSCC-C
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCCC-------------------------CCCCEEECcCCcCCCc-C
Confidence 8888886433 56788888888888875 22211 2377777888777653 3
Q ss_pred ccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCC
Q 003296 190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSL 269 (833)
Q Consensus 190 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 269 (833)
. ..++|+.|++++|.+++ +| . .+++|+.|+|++|+++++ |. .+++|
T Consensus 158 ~---~~~~L~~L~L~~N~l~~-l~-~-------------------------~~~~L~~L~Ls~N~l~~l-~~---~~~~L 203 (622)
T 3g06_A 158 A---LPSELCKLWAYNNQLTS-LP-M-------------------------LPSGLQELSVSDNQLASL-PT---LPSEL 203 (622)
T ss_dssp C---CCTTCCEEECCSSCCSC-CC-C-------------------------CCTTCCEEECCSSCCSCC-CC---CCTTC
T ss_pred C---ccCCCCEEECCCCCCCC-Cc-c-------------------------cCCCCcEEECCCCCCCCC-CC---ccchh
Confidence 2 24678888888888764 22 1 234556666666665542 22 13556
Q ss_pred cEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCC
Q 003296 270 TLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQN 349 (833)
Q Consensus 270 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 349 (833)
+.|++++|.++. +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.|+. +|. .+++|+.|+|++|
T Consensus 204 ~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 204 YKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp CEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred hEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCC
Confidence 666666666552 232 23556666666666664 33 344667777777777763 343 4566777777777
Q ss_pred ccccccCccccCCCCCCEEEccCCcCCccCCC
Q 003296 350 NLNGSIPNSITNMRSLIELQLGGNQLSGTIPM 381 (833)
Q Consensus 350 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 381 (833)
+|+ .+|..|.++++|+.|+|++|++++..|.
T Consensus 272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 776 5566677777777777777777655443
No 316
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=8e-30 Score=298.43 Aligned_cols=322 Identities=16% Similarity=0.108 Sum_probs=154.6
Q ss_pred CCCCCCEEeccCCcCCcc----CCccccCCCCCcEEECcCCcCCCC----CCcccccCCccCccccccccccccCChhh-
Q 003296 100 DYRNLTLIDLSANNLSGS----VPDRIGELSKLEVLILSANNLDGR----LPTSLASITTLSRFAANQNKFSGSVPGGI- 170 (833)
Q Consensus 100 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~l~~n~l~~~~p~~~- 170 (833)
++++|++|+|++|.+++. ++..+..+++|++|+|++|.+++. ++..+.++++|+.|++++|.+.+ +|..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 344444444444444332 112233344444444444444421 12223334444444444444433 22222
Q ss_pred -hhcCCEEeccccccc---ccCCccCCCCCCCCEEecccccCcccCCCCC--CcCCcEEEcCCccccCCCCccccCCCCC
Q 003296 171 -TRFLRNLDLSYNKLL---GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEK 244 (833)
Q Consensus 171 -~~~L~~L~Ls~N~l~---~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~l~~n~l~~~~~~~~f~~l~~ 244 (833)
.+.|+.|+++..... ...+..+..+++|+.|+++++.. +.+|..+ .++|++|++++|.+.+......+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 233555555432211 12223344555666666655422 2233222 2466666666665332222223456777
Q ss_pred CCEEECCCCCCC-CCCCccccCCCCCcEEEcc-----------CCccCCC-ChhhhCCCCCCcEEEccCCcCCCcCchhh
Q 003296 245 LTYLELDNNSFT-GMIPQQLGSCRSLTLLNLA-----------QNELNGS-LPIQLGSLGILQVMNLQLNKLSGEIPSQF 311 (833)
Q Consensus 245 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~-----------~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 311 (833)
|++|+++ +.+. +..+..+..+++|++|+|+ .|.+++. ++.....+++|+.|+++.|.+++..+..+
T Consensus 320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 7777777 3332 2233334566777777777 2444432 12223446777777777777766555555
Q ss_pred cC-CCcCceeecc----CCcCccc-----CccccccCCCCCEEEccCCc--cccccCcccc-CCCCCCEEEccCCcCCcc
Q 003296 312 SQ-LKLLSTMNIS----WNSLSGS-----IPSFLSNLTNLVNLNLRQNN--LNGSIPNSIT-NMRSLIELQLGGNQLSGT 378 (833)
Q Consensus 312 ~~-l~~L~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~L~~N~--l~~~~p~~~~-~l~~L~~L~L~~N~l~~~ 378 (833)
.. +++|+.|+++ .|.+++. ++..+.++++|+.|+|++|. +++..+..+. .+++|++|+|++|.+++.
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 54 6777777775 5566643 33345667777777776432 4444333333 366777777777766531
Q ss_pred -CCCCcc--cccceeeccccccccc-hhhhhccCCCCCEEecccCcCccc
Q 003296 379 -IPMMPP--RLQIALNLSSNLFEGP-IPTTFARLNGLEVLDLSNNRFSGE 424 (833)
Q Consensus 379 -~p~~~~--~~~~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~ 424 (833)
++.... ...+.|++++|.+++. ++..+..+++|+.|++++|+++..
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 110000 0112333344433322 223334455566666666655543
No 317
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.2e-29 Score=266.96 Aligned_cols=257 Identities=22% Similarity=0.235 Sum_probs=144.3
Q ss_pred cccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCc-ccCCcccc-------CCCCCCEEeccCCcCCccCCc
Q 003296 49 QFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH-GEIPKGIA-------DYRNLTLIDLSANNLSGSVPD 120 (833)
Q Consensus 49 ~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~~~ 120 (833)
.+.+.++|++|++++|.+ .+|..+... |+.|+|++|.++ ..+|..+. ++++|++|+|++|++++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 455667778888888887 455544433 777788888773 34555554 677888888888888777777
Q ss_pred cc--cCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCC
Q 003296 121 RI--GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNL 198 (833)
Q Consensus 121 ~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L 198 (833)
.+ +.+++|++|+|++|.+++. |..+..+... ..+.|++|+|++|++.+..|..|..+++|
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~-----------------~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQW-----------------LKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT-----------------CCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh-----------------hcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 65 7788888888888888766 6555443110 01336667777777766666667777777
Q ss_pred CEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCC---CCccccCCCCCcEEEcc
Q 003296 199 QTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM---IPQQLGSCRSLTLLNLA 275 (833)
Q Consensus 199 ~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~L~ 275 (833)
++|+|++|++.+.++ .++...|..+++|++|+|++|++++. ....+..+++|+.|+|+
T Consensus 176 ~~L~Ls~N~l~~~~~-------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 176 STLDLSDNPELGERG-------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp CEEECCSCTTCHHHH-------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CEEECCCCCcCcchH-------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 777777776554211 00111234566666666666666521 11223445555666665
Q ss_pred CCccCCCCh-hhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCcc
Q 003296 276 QNELNGSLP-IQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL 351 (833)
Q Consensus 276 ~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 351 (833)
+|.+.+..| ..+..+++|+.|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|+|++|++
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 555554443 22333444444444444444 2333222 3444444444444433 22 33444444444444443
No 318
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.2e-29 Score=297.08 Aligned_cols=401 Identities=14% Similarity=0.104 Sum_probs=291.0
Q ss_pred cccccccCCCCCCEEeCcCCcC---CCCCCcccC------------CCCCCCEEEccCCcCcccCCccccCC--CCCCEE
Q 003296 45 NINLQFDELVSLKSLNLSKNKF---NGFLPINLG------------KTKALEELVLSGNAFHGEIPKGIADY--RNLTLI 107 (833)
Q Consensus 45 ~~~~~f~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L 107 (833)
..+..+..+++|++|+|+++.. .+..|..++ .+++|++|+|++|.+++..+..+... .+|+.|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3445566777788887776432 123333333 67899999999998887666666653 459999
Q ss_pred eccCCc-CCc-cCCccccCCCCCcEEECcCCcCCCC----CCcccccCCccCccccccccccccCChhh------hhcCC
Q 003296 108 DLSANN-LSG-SVPDRIGELSKLEVLILSANNLDGR----LPTSLASITTLSRFAANQNKFSGSVPGGI------TRFLR 175 (833)
Q Consensus 108 ~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~l~~n~l~~~~p~~~------~~~L~ 175 (833)
+|++|. ++. .++.....+++|++|+|++|.+++. ++..+..+++|+.|+++.|.+++.....+ .+.|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 999987 221 1223345789999999999998766 34456678999999999999973322222 35699
Q ss_pred EEecccccccccCCccCCCCCCCCEEecccccCc---ccCCCCC--CcCCcEEEcCCccccCCCCccccCCCCCCCEEEC
Q 003296 176 NLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE---GSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL 250 (833)
Q Consensus 176 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~---~~~p~~~--~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L 250 (833)
.|+|++|.+.+ +|..+..+++|+.|+++.+... +..+..+ .++|+.|.+.++.. . ..+..+..+++|++|+|
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~-~l~~~~~~~~~L~~L~L 300 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-N-EMPILFPFAAQIRKLDL 300 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-T-TGGGGGGGGGGCCEEEE
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-h-HHHHHHhhcCCCcEEec
Confidence 99999999887 5677888999999999864322 1111222 26899999988642 2 23446778899999999
Q ss_pred CCCCCCCCCC-ccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEcc-----------CCcCCCcC-chhhcCCCcC
Q 003296 251 DNNSFTGMIP-QQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ-----------LNKLSGEI-PSQFSQLKLL 317 (833)
Q Consensus 251 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~-----------~N~l~~~~-p~~~~~l~~L 317 (833)
++|.+++... ..+..+++|+.|+++++-..+.++..+..+++|+.|+++ .|.+++.. +..+..+++|
T Consensus 301 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred CCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 9999865433 346889999999999443333344555778999999999 36676542 3334568999
Q ss_pred ceeeccCCcCcccCcccccc-CCCCCEEEcc----CCccccc-----cCccccCCCCCCEEEccCCc--CCccCCCCcc-
Q 003296 318 STMNISWNSLSGSIPSFLSN-LTNLVNLNLR----QNNLNGS-----IPNSITNMRSLIELQLGGNQ--LSGTIPMMPP- 384 (833)
Q Consensus 318 ~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~p~~~~~l~~L~~L~L~~N~--l~~~~p~~~~- 384 (833)
++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|+.|+++.|. +++..+....
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 99999999999877777765 8999999996 7788764 34447789999999997543 5533221111
Q ss_pred --cccceeecccccccc-chhhhhccCCCCCEEecccCcCccc-cchhccCCCCCCeeeCcCCccccc
Q 003296 385 --RLQIALNLSSNLFEG-PIPTTFARLNGLEVLDLSNNRFSGE-IPQLLAQMPTLTQLLLTNNQLSGV 448 (833)
Q Consensus 385 --~~~~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~ 448 (833)
...+.|++++|.+++ .++..+.++++|+.|++++|.+++. ++..+..+++|+.|++++|+++..
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 123679999999987 4566678899999999999998765 455556799999999999998754
No 319
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.94 E-value=1.4e-28 Score=281.18 Aligned_cols=190 Identities=14% Similarity=0.095 Sum_probs=149.7
Q ss_pred CCccccccCcccEEEEEEcCCCceEEEEEccccch----hhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296 558 NPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDK----IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF 633 (833)
Q Consensus 558 ~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~----~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv 633 (833)
...+.||+|+||.||+|.. .+..+|+|+...+.. .......+.|.+|++++++++|||||++..++..++..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 3457899999999999954 678899998642211 01112245689999999999999999888888888889999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~ 713 (833)
||||++|+|.++++. +..++.|+++||+||| +.+|+||||||+|||++. .+||+|||+++.....
T Consensus 418 mE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~ 482 (540)
T 3en9_A 418 MSYINGKLAKDVIED----------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLD 482 (540)
T ss_dssp EECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCCH
T ss_pred EECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCCc
Confidence 999999999999974 5578999999999999 788999999999999998 9999999999987543
Q ss_pred CCCC-----ccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCccc
Q 003296 714 KSTG-----SLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVN 763 (833)
Q Consensus 714 ~~~~-----~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~ 763 (833)
.... .....+||+.|||||++.. ..|+.++|+||..+-.+|.+.++.+|.
T Consensus 483 ~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 483 EDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred cccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 2111 1135789999999999976 668899999999999999888887763
No 320
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.3e-27 Score=253.54 Aligned_cols=251 Identities=22% Similarity=0.254 Sum_probs=170.9
Q ss_pred cccCCccCccccccccccccCChhhhhcCCEEeccccccc-ccCCccCC-------CCCCCCEEecccccCcccCCCCCC
Q 003296 146 LASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL-GVIPIDLL-------SHPNLQTIDLSVNMLEGSLPQNMS 217 (833)
Q Consensus 146 ~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~-~~~~~~~~-------~~~~L~~L~Ls~N~l~~~~p~~~~ 217 (833)
++...+|+.+++++|.+ .+|..+...|+.|+|++|++. ..+|..+. .+++|++|+|++|.+++.+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~- 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL- 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS-
T ss_pred EccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH-
Confidence 34455566666666666 556666555777777777773 33444443 57788888888888776544321
Q ss_pred cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCC-----CCCcEEEccCCccCCCChhhhCCCCC
Q 003296 218 PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC-----RSLTLLNLAQNELNGSLPIQLGSLGI 292 (833)
Q Consensus 218 ~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~ 292 (833)
.+..+++|++|+|++|++++. |..++.+ ++|++|+|++|++.+..|..|+.+++
T Consensus 116 --------------------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 116 --------------------LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp --------------------SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred --------------------HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 025677778888888877776 6666666 77888888888887777777777788
Q ss_pred CcEEEccCCcCCCc--Cchhh--cCCCcCceeeccCCcCcc---cCccccccCCCCCEEEccCCccccccC-ccccCCCC
Q 003296 293 LQVMNLQLNKLSGE--IPSQF--SQLKLLSTMNISWNSLSG---SIPSFLSNLTNLVNLNLRQNNLNGSIP-NSITNMRS 364 (833)
Q Consensus 293 L~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~ 364 (833)
|+.|++++|++.+. .|..+ ..+++|++|++++|.+++ .....+..+++|+.|+|++|++++..| ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 88888888877654 23333 677888888888888873 222345677888888888888887664 45666788
Q ss_pred CCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCc
Q 003296 365 LIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQ 444 (833)
Q Consensus 365 L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~ 444 (833)
|++|+|++|.|+ .+|. .+. ++|+.||+++|+|++. |. +..+++|+.|++++|+
T Consensus 255 L~~L~Ls~N~l~-~ip~----------------------~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPK----------------------GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCEEECTTSCCS-SCCS----------------------SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred CCEEECCCCccC-hhhh----------------------hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence 888888888876 3332 222 4567777777777765 44 6677777777777777
Q ss_pred ccc
Q 003296 445 LSG 447 (833)
Q Consensus 445 l~~ 447 (833)
+++
T Consensus 308 l~~ 310 (312)
T 1wwl_A 308 FLD 310 (312)
T ss_dssp TTC
T ss_pred CCC
Confidence 765
No 321
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.2e-25 Score=235.98 Aligned_cols=232 Identities=22% Similarity=0.228 Sum_probs=175.9
Q ss_pred CCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296 4 CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL 83 (833)
Q Consensus 4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 83 (833)
|.....-..+++++..++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|..+++|++|
T Consensus 3 C~~~~~~~~~~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 3 CVEVVPNITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp SEEEETTTEEECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ceeccCCceEEecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence 4333445678999999999986 223689999999999999998899999999999999999999888899999999999
Q ss_pred EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCC-CCcccccCCccCccccccccc
Q 003296 84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGR-LPTSLASITTLSRFAANQNKF 162 (833)
Q Consensus 84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~l~~n~l 162 (833)
+|++|.+++..+..|.++++|++|++++|.+++..+..|+.+++|++|+|++|.+++. +|..|..+++|+.|++++|++
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 9999999999899999999999999999999988888899999999999999999874 588888887766666666655
Q ss_pred cccCChhhhhcCCEEecccccccccCCccCCCCCCCC----EEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccc
Q 003296 163 SGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQ----TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSAT 238 (833)
Q Consensus 163 ~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~----~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~ 238 (833)
++.. +..+..+++|+ .|++++|.+++..+. .
T Consensus 162 ~~~~----------------------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-----------------------~ 196 (276)
T 2z62_A 162 QSIY----------------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-----------------------A 196 (276)
T ss_dssp CEEC----------------------GGGGHHHHTCTTCCEEEECCSSCCCEECTT-----------------------S
T ss_pred CcCC----------------------HHHhhhhhhccccceeeecCCCcccccCcc-----------------------c
Confidence 5433 33333333333 566666666533221 1
Q ss_pred cCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCC
Q 003296 239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGS 282 (833)
Q Consensus 239 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 282 (833)
|. ..+|++|+|++|++++..+..|..+++|+.|+|++|++.+.
T Consensus 197 ~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 197 FK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 21 12455666666666555555555666666666666666543
No 322
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.5e-27 Score=265.83 Aligned_cols=236 Identities=22% Similarity=0.216 Sum_probs=176.5
Q ss_pred CCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 003296 29 FAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLID 108 (833)
Q Consensus 29 l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 108 (833)
+++|+.|+|++|.|+++.+..|..+++|++|+|++|.|++..| |..+++|++|+|++|.|++..+ .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 4489999999999998888899999999999999999987665 8889999999999999886543 37899999
Q ss_pred ccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccC
Q 003296 109 LSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVI 188 (833)
Q Consensus 109 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~ 188 (833)
|++|.|++..+. .+++|++|+|++|.|++..|..|+.+++| +.|+|++|.+.+..
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------------------~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV----------------------QYLDLKLNEIDTVN 160 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE----------------------EEEECTTSCCCEEE
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC----------------------CEEECCCCCCCCcC
Confidence 999999876654 35788999999999988877777766654 44555555555555
Q ss_pred CccCC-CCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCC
Q 003296 189 PIDLL-SHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR 267 (833)
Q Consensus 189 ~~~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 267 (833)
|..+. .+++|++|+|++|.+++..+ +..+++|++|+|++|.+++..| .+..++
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~-------------------------~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~ 214 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG-------------------------QVVFAKLKTLDLSSNKLAFMGP-EFQSAA 214 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC-------------------------CCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred hHHHhhhCCcccEEecCCCccccccc-------------------------cccCCCCCEEECCCCCCCCCCH-hHcCCC
Confidence 55554 56777777777777764311 1236677777777777776544 377777
Q ss_pred CCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCC-CcCchhhcCCCcCceeecc
Q 003296 268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS-GEIPSQFSQLKLLSTMNIS 323 (833)
Q Consensus 268 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls 323 (833)
+|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 77777777777774 5666777777777888877777 5667777778888888776
No 323
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8.4e-27 Score=264.32 Aligned_cols=238 Identities=21% Similarity=0.212 Sum_probs=197.4
Q ss_pred CCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEE
Q 003296 52 ELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVL 131 (833)
Q Consensus 52 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 131 (833)
.+++|++|+|++|.|+++.|..|..+++|++|+|++|.+++..| |..+++|++|+|++|.|++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34489999999999998888899999999999999999987665 8899999999999999886443 3789999
Q ss_pred ECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCccc
Q 003296 132 ILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS 211 (833)
Q Consensus 132 ~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 211 (833)
+|++|.|++..+..+ +.|+.|+|++|.+.+..|..+..+++|++|+|++|.+++.
T Consensus 105 ~L~~N~l~~~~~~~l-------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 105 HAANNNISRVSCSRG-------------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp ECCSSCCCCEEECCC-------------------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred ECcCCcCCCCCcccc-------------------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 999998886543321 2377888888888888888888889999999999988754
Q ss_pred CCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCC
Q 003296 212 LPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG 291 (833)
Q Consensus 212 ~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 291 (833)
.|. ..+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++..| .+..++
T Consensus 160 ~~~----------------------~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~ 214 (487)
T 3oja_A 160 NFA----------------------ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAA 214 (487)
T ss_dssp EGG----------------------GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred ChH----------------------HHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCC
Confidence 332 222368899999999999998743 4469999999999999997555 589999
Q ss_pred CCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCc-ccCccccccCCCCCEEEcc
Q 003296 292 ILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS-GSIPSFLSNLTNLVNLNLR 347 (833)
Q Consensus 292 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~ 347 (833)
+|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999999996 6777899999999999999998 7778888888888888886
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3e-25 Score=232.86 Aligned_cols=205 Identities=24% Similarity=0.249 Sum_probs=175.5
Q ss_pred CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
++|+.|++++|.++.++ .|..+++|++|+|++|+|+++.+..|.++++|++|+|++|.|+++.+..|.++++|++|+|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46999999999999985 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCcEEECcCCcCCCCCCcccccCCccC----ccccccc
Q 003296 86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLASITTLS----RFAANQN 160 (833)
Q Consensus 86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~l~l~~n 160 (833)
++|.+++..+..+..+++|++|+|++|.+++. +|..|+++++|++|+|++|.+++..+..|..+.+|+ .+++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999988888899999999999999999875 589999999999999999999998888888887777 6677777
Q ss_pred cccccCChhh-hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccC
Q 003296 161 KFSGSVPGGI-TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSL 212 (833)
Q Consensus 161 ~l~~~~p~~~-~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 212 (833)
.+++..+..+ ...|+.|+|++|++++..+..|..+++|+.|+|++|.+....
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 7765544433 224777777777777665555666777777777777766543
No 325
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-24 Score=227.58 Aligned_cols=202 Identities=24% Similarity=0.266 Sum_probs=176.4
Q ss_pred CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296 8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG 87 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 87 (833)
.+.+.+++++|.++.+|. .-.++|+.|+|++|+|+.+.+..|.++++|++|+|++|+|+.+.+..|..+++|++|+|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 468899999999999985 2237899999999999999988999999999999999999988888899999999999999
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296 88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167 (833)
Q Consensus 88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 167 (833)
|.+++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|.|++..+..|..+++|+.|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 99998888899999999999999999999999999999999999999999998888889999998888888888876555
Q ss_pred hhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcc
Q 003296 168 GGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG 210 (833)
Q Consensus 168 ~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~ 210 (833)
..+ .+.|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 444 3567888888888777666667777788888888877653
No 326
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=3.5e-25 Score=231.58 Aligned_cols=225 Identities=23% Similarity=0.304 Sum_probs=158.0
Q ss_pred CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcC
Q 003296 11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAF 90 (833)
Q Consensus 11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 90 (833)
..+++.++.+..+.....+++|+.|++++|.++.+. .+..+++|++|+|++|.++++ ..+..+++|++|+|++|.+
T Consensus 22 ~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCC
T ss_pred HHHHhcCcccccccccccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCcc
Confidence 344566666666655666777788888887776432 467777888888888877753 3677777888888888888
Q ss_pred cccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhh
Q 003296 91 HGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI 170 (833)
Q Consensus 91 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~ 170 (833)
++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|.+++..+..|..+++
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------------------- 158 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN------------------- 158 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------------------
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-------------------
Confidence 7777777777888888888888887777777777888888888888777666655555544
Q ss_pred hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEEC
Q 003296 171 TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL 250 (833)
Q Consensus 171 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L 250 (833)
|+.|+|++|++++..+..+..+++|++|+|++|.+++. ++..|..+++|++|+|
T Consensus 159 ---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 159 ---LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-----------------------PDGVFDRLTSLQYIWL 212 (272)
T ss_dssp ---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-----------------------CTTTTTTCTTCCEEEC
T ss_pred ---CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-----------------------CHHHHhCCcCCCEEEc
Confidence 45555555655555555566777788888887777632 2334566777777777
Q ss_pred CCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCC
Q 003296 251 DNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG 291 (833)
Q Consensus 251 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 291 (833)
++|.+.+ .+++|+.|++..|.++|.+|..++.+.
T Consensus 213 ~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 213 HDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 7776653 355677777788888777777766554
No 327
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=9.5e-24 Score=220.46 Aligned_cols=202 Identities=25% Similarity=0.313 Sum_probs=131.8
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296 31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS 110 (833)
Q Consensus 31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 110 (833)
+.+.+++++|+++.+.. .+. ++|++|+|++|+|+++.+..|..+++|++|+|++|.++.+.+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46778888888876443 332 578888888888887777778888888888888888876666667778888888888
Q ss_pred CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCc
Q 003296 111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPI 190 (833)
Q Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~ 190 (833)
+|+++++.+..|.++++|++|+|++|.+++..+..|..+++ |++|+|++|++.+..+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK----------------------LTYLSLGYNELQSLPKG 151 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT----------------------CCEEECCSSCCCCCCTT
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC----------------------CCEEECCCCcCCccCHh
Confidence 88887777777777888888888877777665555544443 44444444444444444
Q ss_pred cCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCc
Q 003296 191 DLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLT 270 (833)
Q Consensus 191 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 270 (833)
.|..+++|+.|+|++|.+++ +++..|..+++|++|+|++|++++..+..|..+++|+
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKR-----------------------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSC-----------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred HccCCcccceeEecCCcCcE-----------------------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 45555556666665555442 2233445556666666666666655555555566666
Q ss_pred EEEccCCccC
Q 003296 271 LLNLAQNELN 280 (833)
Q Consensus 271 ~L~L~~N~l~ 280 (833)
.|+|++|++.
T Consensus 209 ~L~l~~N~~~ 218 (270)
T 2o6q_A 209 MLQLQENPWD 218 (270)
T ss_dssp EEECCSSCBC
T ss_pred EEEecCCCee
Confidence 6666666554
No 328
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.8e-24 Score=226.48 Aligned_cols=201 Identities=23% Similarity=0.229 Sum_probs=169.7
Q ss_pred CCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296 4 CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL 83 (833)
Q Consensus 4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 83 (833)
|+++++++.+++++|.++.+|. .-.++++.|+|++|+|+++.+..|.++++|++|+|++|.|+++.+. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 5789999999999999999985 2247899999999999999999999999999999999999976553 789999999
Q ss_pred EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccc
Q 003296 84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS 163 (833)
Q Consensus 84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~ 163 (833)
+|++|.|+ .+|..+..+++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|..+++|+.|++++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999998 67888999999999999999999988899999999999999999999988888888888888888877777
Q ss_pred ccCChhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCc
Q 003296 164 GSVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE 209 (833)
Q Consensus 164 ~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~ 209 (833)
...+..+ ...|+.|+|++|+++ .+|..+...++|+.|+|++|.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 4433332 345777777777776 34555666667777777777654
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.4e-24 Score=225.20 Aligned_cols=204 Identities=20% Similarity=0.229 Sum_probs=187.7
Q ss_pred CCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296 5 GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV 84 (833)
Q Consensus 5 ~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 84 (833)
..+++|+.|++++|.++.++.+..+++|++|+|++|+++++ ..|..+++|++|+|++|.|+++.+..|..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 35688999999999999999999999999999999999975 4799999999999999999999888899999999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296 85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164 (833)
Q Consensus 85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~ 164 (833)
|++|.+++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|..+++|+.|++++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 99999998888889999999999999999999888889999999999999999999888889999999999999999998
Q ss_pred cCChhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC
Q 003296 165 SVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS 217 (833)
Q Consensus 165 ~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~ 217 (833)
..|..+ .+.|+.|+|++|.+.+. +++|+.|+++.|.++|.+|..++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 777544 56799999999988753 56899999999999999998765
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.6e-23 Score=218.03 Aligned_cols=118 Identities=24% Similarity=0.142 Sum_probs=66.9
Q ss_pred ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 003296 26 FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLT 105 (833)
Q Consensus 26 f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 105 (833)
+..+++++.+++++|+++.+.+..+ ++|++|+|++|.|+++.|..|..+++|++|+|++|.|++..+. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4455666666666666665443222 4566666666666665556666666666666666666544332 5556666
Q ss_pred EEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccC
Q 003296 106 LIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASI 149 (833)
Q Consensus 106 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 149 (833)
+|+|++|+|+ .+|..+..+++|++|+|++|+|++..|..|..+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l 123 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCC
Confidence 6666666665 344555556666666666665554444444333
No 331
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=7.2e-24 Score=217.15 Aligned_cols=134 Identities=10% Similarity=0.182 Sum_probs=97.4
Q ss_pred EEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCc-CCCCCCcccCCCCCCCEEEccC-Cc
Q 003296 12 LLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNK-FNGFLPINLGKTKALEELVLSG-NA 89 (833)
Q Consensus 12 ~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~ 89 (833)
.+++.+ ++.+|. -.++|++|+|++|+|+++.+..|.++++|++|+|++|+ ++.+.+..|.++++|++|+|++ |.
T Consensus 17 ~v~c~~--l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 17 RVTCKD--IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp EEEECS--CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred eeEccC--ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 344544 777776 34478888888888888777788888888888888886 7777777787888888888887 77
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCc---EEECcCC-cCCCCCCcccccCCc
Q 003296 90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE---VLILSAN-NLDGRLPTSLASITT 151 (833)
Q Consensus 90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~ 151 (833)
++++.+..|.++++|+.|+|++|++++ +|. |..+++|+ +|++++| .+++..+..|..+++
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhc
Confidence 877777777777778888887777775 444 77777776 7777777 666555555555444
No 332
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=8.3e-27 Score=272.96 Aligned_cols=321 Identities=14% Similarity=0.114 Sum_probs=165.4
Q ss_pred CCCCCCEEeCcCCcCCCCCCcccC-CCCCCCEEEccCC-cCccc-CCccccCCCCCCEEeccCCcCCccCCcccc----C
Q 003296 52 ELVSLKSLNLSKNKFNGFLPINLG-KTKALEELVLSGN-AFHGE-IPKGIADYRNLTLIDLSANNLSGSVPDRIG----E 124 (833)
Q Consensus 52 ~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~ 124 (833)
.+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455566666666555544333333 3555666666555 33321 223333555566666666655443322222 4
Q ss_pred CCCCcEEECcCCcCCCCCCcc----cccCCccCccccccccccccCChhh--hhcCCEEecc-------cccccccCCcc
Q 003296 125 LSKLEVLILSANNLDGRLPTS----LASITTLSRFAANQNKFSGSVPGGI--TRFLRNLDLS-------YNKLLGVIPID 191 (833)
Q Consensus 125 l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls-------~N~l~~~~~~~ 191 (833)
+++|++|+|++|. ....... +..+++|+.|++++|...+.+|..+ .+.|+.|+++ .|.+.+. +..
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVA 260 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHH
T ss_pred CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH-HHH
Confidence 4456666666554 1111111 1234555666665552111122222 2346666533 3333332 224
Q ss_pred CCCCCCCCEE-ecccccCcccCCCCC--CcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCC-CCccccCCC
Q 003296 192 LLSHPNLQTI-DLSVNMLEGSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM-IPQQLGSCR 267 (833)
Q Consensus 192 ~~~~~~L~~L-~Ls~N~l~~~~p~~~--~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~ 267 (833)
+.++++|+.| .+..... +.++... .++|+.|++++|.+........+..+++|+.|++++| ++.. .+.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 5666677766 3332221 1222221 2567777777776432222223456777888888776 3321 122233577
Q ss_pred CCcEEEcc---------CCccCCCChhhh-CCCCCCcEEEccCCcCCCcCchhhc-CCCcCceeecc--C----CcCccc
Q 003296 268 SLTLLNLA---------QNELNGSLPIQL-GSLGILQVMNLQLNKLSGEIPSQFS-QLKLLSTMNIS--W----NSLSGS 330 (833)
Q Consensus 268 ~L~~L~L~---------~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~ 330 (833)
+|+.|++. .+.+++.....+ ..+++|+.|.++.|.+++..+..+. .+++|+.|+++ + |.++..
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 78888773 334443222222 2367777777777777765555554 47778888887 3 445421
Q ss_pred -----CccccccCCCCCEEEccCCccccccCccccC-CCCCCEEEccCCcCCc
Q 003296 331 -----IPSFLSNLTNLVNLNLRQNNLNGSIPNSITN-MRSLIELQLGGNQLSG 377 (833)
Q Consensus 331 -----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~ 377 (833)
++..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 122356677888888866 555544444444 7778888888777653
No 333
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2.3e-23 Score=215.02 Aligned_cols=181 Identities=27% Similarity=0.251 Sum_probs=160.4
Q ss_pred CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296 8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG 87 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 87 (833)
++.+.++++++.++.+|. .-.++|+.|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|..+++|++|+|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 567899999999999985 2237899999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296 88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167 (833)
Q Consensus 88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 167 (833)
|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---------------- 156 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN---------------- 156 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----------------
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC----------------
Confidence 9999888899999999999999999999888888999999999999999999887777777665
Q ss_pred hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCccc
Q 003296 168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS 211 (833)
Q Consensus 168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 211 (833)
|+.|+|++|++.+..+..|..+++|+.|+|++|.+...
T Consensus 157 ------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 ------LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ------CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55666777777766666777888889999998888654
No 334
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.8e-26 Score=270.05 Aligned_cols=365 Identities=16% Similarity=0.144 Sum_probs=187.5
Q ss_pred CCCCCCEEEccCCcCcccCCcccc-CCCCCCEEeccCC-cCCcc-CCccccCCCCCcEEECcCCcCCCCCCcccc----c
Q 003296 76 KTKALEELVLSGNAFHGEIPKGIA-DYRNLTLIDLSAN-NLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLA----S 148 (833)
Q Consensus 76 ~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~ 148 (833)
.+++|++|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456677777777766655555554 4667777777776 34321 333344667777777777766654443333 4
Q ss_pred CCccCcccccccc--ccccCChhh---hhcCCEEecccccccccCCccCCCCCCCCEEeccccc-------CcccCCCCC
Q 003296 149 ITTLSRFAANQNK--FSGSVPGGI---TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNM-------LEGSLPQNM 216 (833)
Q Consensus 149 l~~L~~l~l~~n~--l~~~~p~~~---~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~-------l~~~~p~~~ 216 (833)
+++|+.|++++|. ++......+ .+.|++|+|++|...+.++..+..+++|+.|+++.+. +.+..+ .+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-AL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-HH
Confidence 4567777776665 211101111 2457777777662222245555566677777654332 222111 11
Q ss_pred --CcCCcEE-EcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCC-ccccCCCCCcEEEccCCccCC-CChhhhCCCC
Q 003296 217 --SPNLVRL-RLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIP-QQLGSCRSLTLLNLAQNELNG-SLPIQLGSLG 291 (833)
Q Consensus 217 --~~~L~~L-~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~ 291 (833)
.++|+.| .+..... ..+ +..+..+++|++|+|++|.+++... ..+..+++|+.|++++| +.. .++.....++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l-~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYL-PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGG-GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred hcCCCcccccCCcccch-hhH-HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 1455555 2222211 111 1122345677777777776553221 22446677777777766 321 1222223466
Q ss_pred CCcEEEcc---------CCcCCCcCchhhc-CCCcCceeeccCCcCcccCccccc-cCCCCCEEEcc--C----Cccccc
Q 003296 292 ILQVMNLQ---------LNKLSGEIPSQFS-QLKLLSTMNISWNSLSGSIPSFLS-NLTNLVNLNLR--Q----NNLNGS 354 (833)
Q Consensus 292 ~L~~L~L~---------~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~~ 354 (833)
+|+.|+++ .+.+++.....+. .+++|+.|+++.|.+++.....+. .+++|+.|+|+ + |.++..
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 67777662 2344433222222 366677777666666654444443 46677777776 3 444421
Q ss_pred -----cCccccCCCCCCEEEccCCcCCccCCCCc---ccccceeeccccccccchhhhh-ccCCCCCEEecccCcCcccc
Q 003296 355 -----IPNSITNMRSLIELQLGGNQLSGTIPMMP---PRLQIALNLSSNLFEGPIPTTF-ARLNGLEVLDLSNNRFSGEI 425 (833)
Q Consensus 355 -----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~~~~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~ 425 (833)
++..+..+++|+.|+|++ .+++..+... ....+.|++++|.+++..+..+ ..+++|+.|++++|.+++..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 112245566777777755 4432211111 0112456666666655444443 45666666666666664433
Q ss_pred ch-hccCCCCCCeeeCcCCcc
Q 003296 426 PQ-LLAQMPTLTQLLLTNNQL 445 (833)
Q Consensus 426 p~-~~~~l~~L~~L~ls~N~l 445 (833)
.. ....+++|+.|++++|++
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhCCCCCEEeeeCCCC
Confidence 32 333456666666666655
No 335
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.2e-23 Score=215.42 Aligned_cols=191 Identities=17% Similarity=0.227 Sum_probs=136.1
Q ss_pred CCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc-CcccCCccccCCCCCCEEeccC-CcCCccC
Q 003296 41 NLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA-FHGEIPKGIADYRNLTLIDLSA-NNLSGSV 118 (833)
Q Consensus 41 ~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~ 118 (833)
+++.++. +. .+|++|+|++|+|+++.+..|..+++|++|+|++|. ++.+.+..|.++++|++|+|++ |+++++.
T Consensus 22 ~l~~ip~--~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS--LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC--CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC--CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 3654433 43 389999999999998888889999999999999997 8877778899999999999998 8998888
Q ss_pred CccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccc-cccccCCccCCCCCC
Q 003296 119 PDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN-KLLGVIPIDLLSHPN 197 (833)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~ 197 (833)
+..|.++++|++|+|++|.+++ +|. |..+++|+. |+.|++++| ++.++.+..|..+++
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~-------------------L~~L~l~~N~~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI-------------------FFILEITDNPYMTSIPVNAFQGLCN 156 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS-------------------EEEEEEESCTTCCEECTTTTTTTBS
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc-------------------ccEEECCCCcchhhcCcccccchhc
Confidence 8889999999999999999886 444 555544331 336777777 777666666777778
Q ss_pred CC-EEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCC-CCCCCCccccCC-CCCcEEEc
Q 003296 198 LQ-TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNS-FTGMIPQQLGSC-RSLTLLNL 274 (833)
Q Consensus 198 L~-~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~L 274 (833)
|+ .|++++|.++. +| ...|.. ++|+.|+|++|+ +++..+..|.++ ++|+.|++
T Consensus 157 L~~~L~l~~n~l~~-i~----------------------~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 157 ETLTLKLYNNGFTS-VQ----------------------GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp SEEEEECCSCCCCE-EC----------------------TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred ceeEEEcCCCCCcc-cC----------------------HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 88 88888777762 22 223333 455555555553 554445555555 55555555
Q ss_pred cCCccC
Q 003296 275 AQNELN 280 (833)
Q Consensus 275 ~~N~l~ 280 (833)
++|+++
T Consensus 213 ~~N~l~ 218 (239)
T 2xwt_C 213 SQTSVT 218 (239)
T ss_dssp TTCCCC
T ss_pred CCCccc
Confidence 555554
No 336
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=3.3e-23 Score=220.48 Aligned_cols=193 Identities=21% Similarity=0.331 Sum_probs=154.8
Q ss_pred CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
++++|+.|++++|.++.++.+..+++|++|+|++|+++.+.+ |..+++|++|+|++|+|+++ ..+..+++|++|+|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 467889999999999888888889999999999999987766 88899999999999998864 36888999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296 86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS 165 (833)
Q Consensus 86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~ 165 (833)
++|.+++.. .+..+++|+.|+|++|.+++..+ ++.+++|++|+|++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 999988643 38889999999999999886544 8888999999999999886544 77888888888888888765
Q ss_pred CChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcc
Q 003296 166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG 210 (833)
Q Consensus 166 ~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~ 210 (833)
.+-...+.|+.|+|++|++.+..+ +..+++|+.|+|++|.+++
T Consensus 189 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred hhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 443335567778888887776553 6677777777777777753
No 337
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=6.5e-23 Score=222.63 Aligned_cols=240 Identities=16% Similarity=0.119 Sum_probs=175.8
Q ss_pred CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCC-CCCcccCCCCCCCE-EEccCC
Q 003296 11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG-FLPINLGKTKALEE-LVLSGN 88 (833)
Q Consensus 11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~-L~L~~N 88 (833)
+++++++|+|++||. .-.+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+ +.+.+|.++++|++ +++++|
T Consensus 12 ~~v~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 689999999999986 225789999999999999999999999999999999999865 45568999998775 677789
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcC-CcCCCCCCcccccCC-ccCccccccccccccC
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSA-NNLDGRLPTSLASIT-TLSRFAANQNKFSGSV 166 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~-~L~~l~l~~n~l~~~~ 166 (833)
+++.+.|..|..+++|++|++++|+|+...+..+....++..|++++ |+++...+..|..+. .++.|++++|+++...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 99999999999999999999999999988888888888999999966 677776667777664 4566667777666433
Q ss_pred Chhh-hhcCCEEeccc-ccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCC
Q 003296 167 PGGI-TRFLRNLDLSY-NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK 244 (833)
Q Consensus 167 p~~~-~~~L~~L~Ls~-N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~ 244 (833)
+..+ ...|+.|++++ |.+..+.+..|..+++|++|||++|+|+ .+|... +.+
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-----------------------~lp~~~---~~~ 224 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-----------------------SLPSYG---LEN 224 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-----------------------CCCSSS---CTT
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-----------------------ccChhh---hcc
Confidence 3322 23466666653 4444443445566666666666666665 244333 334
Q ss_pred CCEEECCCCCCCCCCCccccCCCCCcEEEccCCc
Q 003296 245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNE 278 (833)
Q Consensus 245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 278 (833)
|+.|.+.++.-...+| .+.++++|+.+++.++.
T Consensus 225 L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred chHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 5555544443333444 36677777777776543
No 338
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=224.91 Aligned_cols=224 Identities=20% Similarity=0.210 Sum_probs=165.5
Q ss_pred CCCCCEEECCCCCCCCccc---ccccCCCCCCEEeCcCCcCCCCCCccc--CCCCCCCEEEccCCcCcccCC----cccc
Q 003296 29 FAGLEVLDFSSNNLNGNIN---LQFDELVSLKSLNLSKNKFNGFLPINL--GKTKALEELVLSGNAFHGEIP----KGIA 99 (833)
Q Consensus 29 l~~L~~L~Ls~N~l~~~~~---~~f~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~ 99 (833)
...++.|.+.++.++...- ..+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3457888888887753211 123345779999999999998888888 889999999999999987555 4566
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCC---C-CcccccCCccCcccccccccccc--CChhh---
Q 003296 100 DYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGR---L-PTSLASITTLSRFAANQNKFSGS--VPGGI--- 170 (833)
Q Consensus 100 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~-p~~~~~l~~L~~l~l~~n~l~~~--~p~~~--- 170 (833)
.+++|++|+|++|++++..+..|+.+++|++|+|++|++.+. . +..+..+++|+.|++++|+++.. .+..+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 789999999999999988888999999999999999998752 2 23346788888888888888632 11112
Q ss_pred hhcCCEEecccccccccCCccCCCC---CCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296 171 TRFLRNLDLSYNKLLGVIPIDLLSH---PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY 247 (833)
Q Consensus 171 ~~~L~~L~Ls~N~l~~~~~~~~~~~---~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~ 247 (833)
...|++|+|++|++.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-------------------------~~L~~ 276 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-------------------------AKLRV 276 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-------------------------SCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-------------------------CCCCE
Confidence 3568888888888888777666665 58888888888877 3343222 56777
Q ss_pred EECCCCCCCCCCCccccCCCCCcEEEccCCccC
Q 003296 248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN 280 (833)
Q Consensus 248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 280 (833)
|+|++|++++. |. +..+++|+.|+|++|+++
T Consensus 277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 77777777754 22 566777777777777765
No 339
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.89 E-value=2.4e-24 Score=225.51 Aligned_cols=159 Identities=12% Similarity=-0.007 Sum_probs=124.2
Q ss_pred cCCccccccCcccEEEEEEcCCCceEEEEEccccchhhh-c-------------cChhHHHHHHHHHhcCCCCCcccceE
Q 003296 557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQ-L-------------GSHHKFDKELEVLGKLSNSNVMTPLA 622 (833)
Q Consensus 557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~-~-------------~~~~~~~~E~~~l~~l~H~niv~~~~ 622 (833)
|...+.||+|+||.||+|...+|+.||||.++....... . .....|.+|+++|++++ | +++.+
T Consensus 92 ~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~ 168 (282)
T 1zar_A 92 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPK 168 (282)
T ss_dssp SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCC
T ss_pred EEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCe
Confidence 344589999999999999998899999999942211110 0 12457999999999998 5 77777
Q ss_pred EEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702 (833)
Q Consensus 623 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~ 702 (833)
++. .+..|+|||||++|+|.+ +.. .....++.|+++||+||| +.+|+||||||+|||++ ++.+||+
T Consensus 169 ~~~-~~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~-~~~vkl~ 234 (282)
T 1zar_A 169 VYA-WEGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-EEGIWII 234 (282)
T ss_dssp EEE-EETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-TTEEEEC
T ss_pred EEe-ccceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-CCcEEEE
Confidence 554 466799999999999998 532 123469999999999999 78999999999999999 9999999
Q ss_pred cceeeeeeCCCCCCCccccccccccccccccccC----------CcccccCcchh
Q 003296 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT----------MRVTMAGNVYS 747 (833)
Q Consensus 703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----------~~~~~~~Dv~S 747 (833)
|||+|+. +..|+|||++.. .+|..++|+|.
T Consensus 235 DFG~a~~---------------~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~ 274 (282)
T 1zar_A 235 DFPQSVE---------------VGEEGWREILERDVRNIITYFSRTYRTEKDINS 274 (282)
T ss_dssp CCTTCEE---------------TTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred ECCCCeE---------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence 9999863 335789998753 45666677765
No 340
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.7e-22 Score=215.08 Aligned_cols=206 Identities=24% Similarity=0.386 Sum_probs=130.7
Q ss_pred ECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCccc
Q 003296 14 NFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE 93 (833)
Q Consensus 14 ~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 93 (833)
.+..+.++.+..+..+++|+.|++++|.++.+. .|..+++|++|+|++|.++++.+ +..+++|++|+|++|.+++.
T Consensus 25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~ 100 (308)
T 1h6u_A 25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV 100 (308)
T ss_dssp HTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC
T ss_pred HhCCCCcCceecHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc
Confidence 455566666555566777888888888877643 57778888888888888876544 77778888888888887753
Q ss_pred CCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhc
Q 003296 94 IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF 173 (833)
Q Consensus 94 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~ 173 (833)
..+..+++|+.|+|++|++++.. .|..+++|++|+|++|.+++..+ +..+++
T Consensus 101 --~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~---------------------- 152 (308)
T 1h6u_A 101 --SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTN---------------------- 152 (308)
T ss_dssp --GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTT----------------------
T ss_pred --hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCC----------------------
Confidence 35777777888888888777543 27777777777777777765432 322222
Q ss_pred CCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCC
Q 003296 174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNN 253 (833)
Q Consensus 174 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N 253 (833)
|+.|+|++|++.+..+ +..+++|+.|++++|.+++ +++ +..+++|++|+|++|
T Consensus 153 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------------~~~--l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-----------------------ISP--LASLPNLIEVHLKNN 205 (308)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-----------------------CGG--GGGCTTCCEEECTTS
T ss_pred ccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc-----------------------Chh--hcCCCCCCEEEccCC
Confidence 4455555555544322 4555666666666665542 111 445566666666666
Q ss_pred CCCCCCCccccCCCCCcEEEccCCccC
Q 003296 254 SFTGMIPQQLGSCRSLTLLNLAQNELN 280 (833)
Q Consensus 254 ~l~~~~~~~~~~l~~L~~L~L~~N~l~ 280 (833)
++++..+ +..+++|+.|+|++|+++
T Consensus 206 ~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 206 QISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred ccCcccc--ccCCCCCCEEEccCCeee
Confidence 6665432 556666666666666654
No 341
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.7e-22 Score=202.06 Aligned_cols=182 Identities=25% Similarity=0.214 Sum_probs=160.1
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 89 (833)
-+.++++++.++.+|. ...++|++|+|++|+++++.+..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|.
T Consensus 9 ~~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3689999999999985 346789999999999999998899999999999999999998888889999999999999999
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChh
Q 003296 90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG 169 (833)
Q Consensus 90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~ 169 (833)
+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++++|.+.+..|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-- 165 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-- 165 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT--
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC--
Confidence 998888889999999999999999998888889999999999999999998888788889998888888887776544
Q ss_pred hhhcCCEEecccccccccCCccCCCCCC
Q 003296 170 ITRFLRNLDLSYNKLLGVIPIDLLSHPN 197 (833)
Q Consensus 170 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 197 (833)
.|+.|+++.|+++|.+|..+..++.
T Consensus 166 ---~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 166 ---GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---CHHHHHHHHHhCCceeeccCccccC
Confidence 3677777777777777776665543
No 342
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=221.97 Aligned_cols=220 Identities=18% Similarity=0.196 Sum_probs=168.5
Q ss_pred CCCEEECCCCCCCC--c---ccccCCCCCCEEECCCCCCCCcccccc--cCCCCCCEEeCcCCcCCCCCC----cccCCC
Q 003296 9 GLKLLNFSKNELVS--L---PTFNGFAGLEVLDFSSNNLNGNINLQF--DELVSLKSLNLSKNKFNGFLP----INLGKT 77 (833)
Q Consensus 9 ~L~~L~ls~N~l~~--i---~~f~~l~~L~~L~Ls~N~l~~~~~~~f--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l 77 (833)
.++.+.+.++.+.. + ..+..+++|++|+|++|.+++..+..| ..+++|++|+|++|.|++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46778888887754 2 234456779999999999988888887 888999999999999887555 445678
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCc---cC-CccccCCCCCcEEECcCCcCCCCCCc---ccccCC
Q 003296 78 KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSG---SV-PDRIGELSKLEVLILSANNLDGRLPT---SLASIT 150 (833)
Q Consensus 78 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~ 150 (833)
++|++|+|++|.+++..|..|+.+++|++|+|++|++.+ .. +..++.+++|++|+|++|.++...+. .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 889999999999988888888899999999999998764 22 23347888899999999988743221 356778
Q ss_pred ccCccccccccccccCChhh--h---hcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEc
Q 003296 151 TLSRFAANQNKFSGSVPGGI--T---RFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRL 225 (833)
Q Consensus 151 ~L~~l~l~~n~l~~~~p~~~--~---~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l 225 (833)
+|+.|++++|++++..|..+ . +.|++|+|++|+++ .+|..+. ++|++|+|++|++++.......++|+.|++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence 89999999999988766544 2 47899999999988 4566554 789999999999987422223378899999
Q ss_pred CCcccc
Q 003296 226 GTNLLI 231 (833)
Q Consensus 226 ~~n~l~ 231 (833)
++|.+.
T Consensus 302 ~~N~l~ 307 (310)
T 4glp_A 302 DGNPFL 307 (310)
T ss_dssp SSTTTS
T ss_pred cCCCCC
Confidence 999864
No 343
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=4.9e-24 Score=232.73 Aligned_cols=129 Identities=24% Similarity=0.257 Sum_probs=83.5
Q ss_pred EEECCCCCCCC-cccccCCC-CCCEEECCCCCCCCccc----ccccCCC-CCCEEeCcCCcCCCCCCcccCCC-----CC
Q 003296 12 LLNFSKNELVS-LPTFNGFA-GLEVLDFSSNNLNGNIN----LQFDELV-SLKSLNLSKNKFNGFLPINLGKT-----KA 79 (833)
Q Consensus 12 ~L~ls~N~l~~-i~~f~~l~-~L~~L~Ls~N~l~~~~~----~~f~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 79 (833)
.+++++|.+++ +|.|...+ +|++|||++|+|+...+ ..|.+++ +|++|+|++|.|++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777776 46554444 37777777777776665 6677777 77777777777776666655554 67
Q ss_pred CCEEEccCCcCcccCCcccc----CC-CCCCEEeccCCcCCccCCcccc----C-CCCCcEEECcCCcCCC
Q 003296 80 LEELVLSGNAFHGEIPKGIA----DY-RNLTLIDLSANNLSGSVPDRIG----E-LSKLEVLILSANNLDG 140 (833)
Q Consensus 80 L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~~~~~~----~-l~~L~~L~Ls~N~l~~ 140 (833)
|++|+|++|.+++..+..+. .+ ++|+.|+|++|+|++..+..+. . .++|++|+|++|.++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 77777777777665555333 33 6677777777777655544432 2 2467777777766654
No 344
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=8.1e-24 Score=231.01 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=79.4
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCC----cccCCCC-CCCEEEccCCcCcccCCccccCC-----CC
Q 003296 34 VLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLP----INLGKTK-ALEELVLSGNAFHGEIPKGIADY-----RN 103 (833)
Q Consensus 34 ~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 103 (833)
.++|++|++++..+..+...++|++|||++|.|++..+ ..|..++ +|++|+|++|.+++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46778888887777766666668888888888877666 6667777 78888888888877666666654 77
Q ss_pred CCEEeccCCcCCccCCcccc----CC-CCCcEEECcCCcCCCCCCcc
Q 003296 104 LTLIDLSANNLSGSVPDRIG----EL-SKLEVLILSANNLDGRLPTS 145 (833)
Q Consensus 104 L~~L~Ls~N~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~~~~p~~ 145 (833)
|++|+|++|.+++..+..+. .+ ++|++|+|++|.|++..+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 78888888877765555433 33 67777777777776554433
No 345
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.9e-21 Score=210.98 Aligned_cols=239 Identities=16% Similarity=0.123 Sum_probs=163.9
Q ss_pred CEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccC-CccccCCCCCCE-Eecc
Q 003296 33 EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI-PKGIADYRNLTL-IDLS 110 (833)
Q Consensus 33 ~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~-L~Ls 110 (833)
++++.++|+++.++. .+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ +.+|.++++|+. +.++
T Consensus 12 ~~v~C~~~~Lt~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 578888999986644 33 367999999999999888888999999999999999986644 457889988775 6677
Q ss_pred CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccc-ccccccCC
Q 003296 111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY-NKLLGVIP 189 (833)
Q Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~-N~l~~~~~ 189 (833)
.|+|+.+.|..|.++++|++|++++|.|+...+..+....++ ..|++++ |++..+.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l----------------------~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK----------------------VLLDIQDNINIHTIER 146 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC----------------------EEEEEESCTTCCEECT
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchh----------------------hhhhhccccccccccc
Confidence 899998889999999999999999999987666555544443 3445433 34544444
Q ss_pred ccCCCCC-CCCEEecccccCcccCCCCCC-cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCC
Q 003296 190 IDLLSHP-NLQTIDLSVNMLEGSLPQNMS-PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR 267 (833)
Q Consensus 190 ~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 267 (833)
..|..+. .++.|+|++|.|+...+..+. .+++.|++.+|+.++.++...|..+++|++|||++|+|+.+.+..|.
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~--- 223 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE--- 223 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---
T ss_pred cchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---
Confidence 5555553 577788888887754444333 45666666655445567777777788888888888887766554444
Q ss_pred CCcEEEccCCccCCCChhhhCCCCCCcEEEccC
Q 003296 268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQL 300 (833)
Q Consensus 268 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 300 (833)
+|+.|.+.++.--..+| .+..+++|+.+++++
T Consensus 224 ~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred cchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 34444443332222344 244555555555543
No 346
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.9e-21 Score=199.20 Aligned_cols=179 Identities=26% Similarity=0.331 Sum_probs=152.4
Q ss_pred CCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCC
Q 003296 198 LQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN 277 (833)
Q Consensus 198 L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 277 (833)
.+.++++++.++ .+|..+.++++.|++++|.+.+ +++..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIPADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCcc-ccCCCCCCCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 445555555554 3444444555566666655543 55567889999999999999999999989999999999999999
Q ss_pred ccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCc
Q 003296 278 ELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN 357 (833)
Q Consensus 278 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 357 (833)
.+++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99988888899999999999999999988888889999999999999999988888899999999999999999988888
Q ss_pred cccCCCCCCEEEccCCcCCcc
Q 003296 358 SITNMRSLIELQLGGNQLSGT 378 (833)
Q Consensus 358 ~~~~l~~L~~L~L~~N~l~~~ 378 (833)
.|..+++|+.|+|++|++.+.
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 999999999999999999865
No 347
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4e-23 Score=223.27 Aligned_cols=221 Identities=18% Similarity=0.202 Sum_probs=134.3
Q ss_pred CCCEEECCCCCCCCcccccccCC--CCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCccc-CCccccCCCCCCEE
Q 003296 31 GLEVLDFSSNNLNGNINLQFDEL--VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE-IPKGIADYRNLTLI 107 (833)
Q Consensus 31 ~L~~L~Ls~N~l~~~~~~~f~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L 107 (833)
.++.||+++|.+. +..+..+ ++++.|++++|.+++..+. +..+++|++|+|++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4777888887776 4556666 7788888888888766554 44677888888888877654 66777777888888
Q ss_pred eccCCcCCccCCccccCCCCCcEEECcCC-cCCCC-CCcccccCCccCccccccccccccCChhhhhcCCEEecccc-cc
Q 003296 108 DLSANNLSGSVPDRIGELSKLEVLILSAN-NLDGR-LPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN-KL 184 (833)
Q Consensus 108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N-~l 184 (833)
+|++|.+++..+..|+.+++|++|+|++| .+++. ++..+..+++ |++|+|++| .+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~----------------------L~~L~l~~~~~l 181 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR----------------------LDELNLSWCFDF 181 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT----------------------CCEEECCCCTTC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC----------------------CCEEcCCCCCCc
Confidence 88888777667777777788888888777 45531 3333333333 444444444 44
Q ss_pred ccc-CCccCCCCC-CCCEEeccccc--CcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCC-CCCCC
Q 003296 185 LGV-IPIDLLSHP-NLQTIDLSVNM--LEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNS-FTGMI 259 (833)
Q Consensus 185 ~~~-~~~~~~~~~-~L~~L~Ls~N~--l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~-l~~~~ 259 (833)
++. ++..+..++ +|++|+|++|. ++. +.+ +..+..+++|++|++++|. +++..
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~---------------------~~l-~~~~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQK---------------------SDL-STLVRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCH---------------------HHH-HHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCH---------------------HHH-HHHHhhCCCCCEEeCCCCCcCCHHH
Confidence 332 233344455 66666666663 220 001 1233456666777776666 55555
Q ss_pred CccccCCCCCcEEEccCCccCCCChh---hhCCCCCCcEEEccCC
Q 003296 260 PQQLGSCRSLTLLNLAQNELNGSLPI---QLGSLGILQVMNLQLN 301 (833)
Q Consensus 260 ~~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N 301 (833)
+..+..+++|+.|++++|. +..+. .+..+++|+.|++++|
T Consensus 240 ~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc
Confidence 5566666666666666664 12222 3444555555555554
No 348
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=9.1e-24 Score=232.96 Aligned_cols=258 Identities=26% Similarity=0.301 Sum_probs=129.5
Q ss_pred ccccCCCCCCEEeCcCCcCCCCCC----cccCCCCCCCEEEccCCc---CcccCCccc-------cCCCCCCEEeccCCc
Q 003296 48 LQFDELVSLKSLNLSKNKFNGFLP----INLGKTKALEELVLSGNA---FHGEIPKGI-------ADYRNLTLIDLSANN 113 (833)
Q Consensus 48 ~~f~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~---l~~~~p~~~-------~~l~~L~~L~Ls~N~ 113 (833)
..+..+++|++|+|++|.|+...+ ..|..+++|++|+|++|. +++.+|..+ ..+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 345566667777777776665422 235566666666666643 333344333 455555555555555
Q ss_pred CCc----cCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCC
Q 003296 114 LSG----SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189 (833)
Q Consensus 114 l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~ 189 (833)
++. .+|..+..+++|++|+|++|.++...+..+. ..|.. +..|++.+.
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~------------------------~~l~~--l~~~~~~~~-- 157 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA------------------------RALQE--LAVNKKAKN-- 157 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH------------------------HHHHH--HHHHHHHHT--
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH------------------------HHHHH--Hhhhhhccc--
Confidence 554 2444455555555555555554322211111 11100 011111111
Q ss_pred ccCCCCCCCCEEecccccCcc-cCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCC-----CCCccc
Q 003296 190 IDLLSHPNLQTIDLSVNMLEG-SLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTG-----MIPQQL 263 (833)
Q Consensus 190 ~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~-----~~~~~~ 263 (833)
.++|++|+|++|.++. .+|. + ...+..+++|++|+|++|+++. ..+..+
T Consensus 158 -----~~~L~~L~L~~n~l~~~~~~~-------------------l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l 212 (386)
T 2ca6_A 158 -----APPLRSIICGRNRLENGSMKE-------------------W-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212 (386)
T ss_dssp -----CCCCCEEECCSSCCTGGGHHH-------------------H-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG
T ss_pred -----CCCCcEEECCCCCCCcHHHHH-------------------H-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh
Confidence 1566666666666541 1110 0 0234456667777777776652 233355
Q ss_pred cCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCccc----Cccccc--c
Q 003296 264 GSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGS----IPSFLS--N 337 (833)
Q Consensus 264 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~--~ 337 (833)
..+++|+.|+|++|.++..- .+.+|..+..+++|++|+|++|.+++. ++..+. .
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g--------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLG--------------------SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHH--------------------HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred hcCCCccEEECcCCCCCcHH--------------------HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 56666666666666653000 023344444455555555555555433 333442 2
Q ss_pred CCCCCEEEccCCcccc----ccCccc-cCCCCCCEEEccCCcCCcc
Q 003296 338 LTNLVNLNLRQNNLNG----SIPNSI-TNMRSLIELQLGGNQLSGT 378 (833)
Q Consensus 338 l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~ 378 (833)
+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++.
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 5666666666666665 355555 4567777777777776644
No 349
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.7e-23 Score=230.80 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=100.2
Q ss_pred CCCcEEEccCCccC-CCCh---hhhCCCCCCcEEEccCCcCCC-----cCchhhcCCCcCceeeccCCcCc----ccCcc
Q 003296 267 RSLTLLNLAQNELN-GSLP---IQLGSLGILQVMNLQLNKLSG-----EIPSQFSQLKLLSTMNISWNSLS----GSIPS 333 (833)
Q Consensus 267 ~~L~~L~L~~N~l~-~~~p---~~~~~l~~L~~L~L~~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~~~ 333 (833)
++|++|+|++|++. +.++ ..+..+++|+.|++++|.++. ..|..+..+++|++|+|++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 55555556555554 2233 244556666666777666652 34447788899999999999996 56788
Q ss_pred ccccCCCCCEEEccCCccccc----cCcccc--CCCCCCEEEccCCcCCc----cCCCCc-c--cccceeeccccccccc
Q 003296 334 FLSNLTNLVNLNLRQNNLNGS----IPNSIT--NMRSLIELQLGGNQLSG----TIPMMP-P--RLQIALNLSSNLFEGP 400 (833)
Q Consensus 334 ~~~~l~~L~~L~L~~N~l~~~----~p~~~~--~l~~L~~L~L~~N~l~~----~~p~~~-~--~~~~~L~Ls~N~l~~~ 400 (833)
.+..+++|+.|+|++|.+++. ++..+. .+++|+.|+|++|.+++ .+|... . .....|++++|.+++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 899999999999999999876 566664 49999999999999987 355433 2 2336899999999987
Q ss_pred hh
Q 003296 401 IP 402 (833)
Q Consensus 401 ~p 402 (833)
.|
T Consensus 319 ~~ 320 (386)
T 2ca6_A 319 DD 320 (386)
T ss_dssp SH
T ss_pred hh
Confidence 75
No 350
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=8.4e-23 Score=220.76 Aligned_cols=258 Identities=17% Similarity=0.198 Sum_probs=176.0
Q ss_pred CCCCEEECCCCCCCCcccccCC--CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCC-CCcccCCCCCCCEEE
Q 003296 8 DGLKLLNFSKNELVSLPTFNGF--AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF-LPINLGKTKALEELV 84 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~~f~~l--~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ 84 (833)
..++.+++++|.+.. ..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. .|..+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 348899999998873 234455 7899999999999988776 45799999999999999865 777899999999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEeccCC-cCCc-cCCccccCCCCCcEEECcCC-cCCCC-CCcccccCC-ccCcccccc
Q 003296 85 LSGNAFHGEIPKGIADYRNLTLIDLSAN-NLSG-SVPDRIGELSKLEVLILSAN-NLDGR-LPTSLASIT-TLSRFAANQ 159 (833)
Q Consensus 85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~l~l~~ 159 (833)
|++|.+++..+..++.+++|++|+|++| .+++ .++..+.++++|++|+|++| .+++. ++..+..++ +|+.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9999999888999999999999999999 6875 36777899999999999999 88754 455566666 555555555
Q ss_pred ccccccCChhhhhcCCEEeccccccc-ccCCccCCCCCCCCEEeccccc-CcccCCCCCCcCCcEEEcCCccccCCCCcc
Q 003296 160 NKFSGSVPGGITRFLRNLDLSYNKLL-GVIPIDLLSHPNLQTIDLSVNM-LEGSLPQNMSPNLVRLRLGTNLLIGEIPSA 237 (833)
Q Consensus 160 n~l~~~~p~~~~~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~ 237 (833)
|.+ .++ +.+|..+..+++|++|++++|. +++..+ .
T Consensus 205 ~~~--------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-----------------------~ 241 (336)
T 2ast_B 205 YRK--------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-----------------------Q 241 (336)
T ss_dssp CGG--------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-----------------------G
T ss_pred Ccc--------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-----------------------H
Confidence 421 222 2233344456667777776666 332211 1
Q ss_pred ccCCCCCCCEEECCCCC-CCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcC
Q 003296 238 TFTSLEKLTYLELDNNS-FTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQ 313 (833)
Q Consensus 238 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 313 (833)
.+..+++|++|++++|. +.......+..+++|+.|++++| +....-..+. ..+..|+++.|.+++..|..+..
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 33445666666666663 22111124556666666666666 3321111111 12444456667776666665543
No 351
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=191.72 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=144.7
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCccc-ccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNIN-LQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN 88 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~-~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 88 (833)
-+.+++++|.++.+|. .-...+++|+|++|+|+++.+ ..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 3689999999999985 234568999999999998855 56999999999999999999999999999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 167 (833)
.|++..+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..|..|..+++|+.|++++|.+++..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876544
No 352
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=1.1e-20 Score=190.36 Aligned_cols=153 Identities=21% Similarity=0.275 Sum_probs=143.1
Q ss_pred CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcC
Q 003296 11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAF 90 (833)
Q Consensus 11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 90 (833)
+.+++++|.++.+|. .-.++|+.|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|.|
T Consensus 14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 689999999999986 2237899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296 91 HGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164 (833)
Q Consensus 91 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~ 164 (833)
+.+.+..|.++++|+.|+|++|+|+++.|..|..+++|++|+|++|.|++..+..|..+++|+.|++++|.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 98888889999999999999999999999999999999999999999999988889999998888888888764
No 353
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=8.1e-21 Score=206.93 Aligned_cols=177 Identities=28% Similarity=0.238 Sum_probs=144.2
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCccccccc-CCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFD-ELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN 88 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 88 (833)
-+.+++++|.|+.+|. .-...++.|+|++|+|+++.+..|. ++++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus 20 ~~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 3689999999999986 3345799999999999999999998 9999999999999999999999999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCccc---ccCCccCcccccccccccc
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSL---ASITTLSRFAANQNKFSGS 165 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~l~l~~n~l~~~ 165 (833)
+|+++.+..|.++++|+.|+|++|+|+++.|..|.++++|++|+|++|.|++..+..| ..+++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~-------------- 164 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK-------------- 164 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT--------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc--------------
Confidence 9999888899999999999999999999999999999999999999999997655555 33444
Q ss_pred CChhhhhcCCEEecccccccccCCccCCCCCC--CCEEecccccCc
Q 003296 166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPN--LQTIDLSVNMLE 209 (833)
Q Consensus 166 ~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~--L~~L~Ls~N~l~ 209 (833)
|+.|+|++|++.++.+..+..++. ++.|+|++|.+.
T Consensus 165 --------L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 165 --------LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --------CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred --------CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 445555555555443334444443 355666666554
No 354
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.9e-20 Score=184.93 Aligned_cols=158 Identities=26% Similarity=0.292 Sum_probs=145.8
Q ss_pred CCCCCEEECCCCCCCCccc--ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296 7 IDGLKLLNFSKNELVSLPT--FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV 84 (833)
Q Consensus 7 l~~L~~L~ls~N~l~~i~~--f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 84 (833)
.++|+.|++++|.++.++. |..+++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4679999999999999863 88999999999999999999888999999999999999999998888899999999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296 85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164 (833)
Q Consensus 85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~ 164 (833)
|++|.|++..+..|..+++|+.|+|++|+++++.+..|..+++|++|+|++|.+.+. ++.|+.|++..|+++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCc
Confidence 999999988888899999999999999999988888899999999999999988753 4578999999999999
Q ss_pred cCChhhh
Q 003296 165 SVPGGIT 171 (833)
Q Consensus 165 ~~p~~~~ 171 (833)
.+|..+.
T Consensus 180 ~ip~~~~ 186 (208)
T 2o6s_A 180 VVRNSAG 186 (208)
T ss_dssp TBBCTTS
T ss_pred eeeccCc
Confidence 9997653
No 355
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4.2e-20 Score=210.81 Aligned_cols=183 Identities=26% Similarity=0.313 Sum_probs=142.5
Q ss_pred CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296 8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG 87 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 87 (833)
.+|+.|+|++|.|+++|.- -+++|++|+|++|+|+.+. ..+++|++|+|++|+|++ +|. |.. +|++|+|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN-LPPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC-CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHh-HcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 3789999999999998751 2478999999999998554 457899999999999997 455 655 899999999
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296 88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167 (833)
Q Consensus 88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 167 (833)
|.|++ +|. .+++|+.|+|++|.|++ +|. .+++|++|+|++|.|++ +|. |. ++|+.|++++|+|+ .+|
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 99987 455 68899999999999987 454 57899999999999987 555 65 78888888888887 555
Q ss_pred hhhhhcC-------CEEecccccccccCCccCCCCCCCCEEecccccCcccCCC
Q 003296 168 GGITRFL-------RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ 214 (833)
Q Consensus 168 ~~~~~~L-------~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~ 214 (833)
. +...| +.|+|++|+++. +|..+..+++|+.|+|++|.+++.+|.
T Consensus 197 ~-~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 197 A-VPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C-CC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred h-HHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 5 54466 888888888874 566666788888888888887765543
No 356
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=9.2e-20 Score=184.91 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=143.1
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 89 (833)
-+.++++++.++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+.+.+..|..+++|++|+|++|+
T Consensus 21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 5689999999999986 334899999999999999999999999999999999999998888889999999999999999
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296 90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV 166 (833)
Q Consensus 90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~ 166 (833)
|+++.+..|..+++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|++.+|.+....
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99888888999999999999999999 67888999999999999999999888888999999999998888887644
No 357
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=6.2e-20 Score=193.39 Aligned_cols=184 Identities=24% Similarity=0.297 Sum_probs=100.5
Q ss_pred CCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccC
Q 003296 15 FSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI 94 (833)
Q Consensus 15 ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 94 (833)
+..+.+..+..+..+++|+.|++++|.++.+. .|..+++|++|+|++|+|+++.+ +..+++|++|+|++|.+++.
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~- 105 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL- 105 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-
T ss_pred hcCCCcccccchhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-
Confidence 44444444433444455555555555554432 24445555555555555554333 45555555555555555432
Q ss_pred CccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcC
Q 003296 95 PKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFL 174 (833)
Q Consensus 95 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L 174 (833)
..+..+++|++|+|++|++++. ..+..+++|++|+|++|.+++. ..+..+++|+.|++++|++++..|-...+.|
T Consensus 106 -~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L 180 (291)
T 1h6t_A 106 -SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180 (291)
T ss_dssp -GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred -hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCcc
Confidence 2255555555555555555432 2345555555555555555543 3445555555555555555543332224457
Q ss_pred CEEecccccccccCCccCCCCCCCCEEecccccCcc
Q 003296 175 RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG 210 (833)
Q Consensus 175 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~ 210 (833)
+.|+|++|++++. + .+..+++|+.|++++|.++.
T Consensus 181 ~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 7888888887764 3 37888999999999998875
No 358
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=8e-20 Score=208.51 Aligned_cols=195 Identities=25% Similarity=0.343 Sum_probs=116.5
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296 31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS 110 (833)
Q Consensus 31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 110 (833)
+|+.|+|++|+|+++.+ .+ .++|++|+|++|+|+. +| ..+++|++|+|++|.|++ +|. |.+ +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~-~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD-NL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCS-CC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCH-hH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555554322 22 1445555555555552 23 234455555555555554 333 333 45555555
Q ss_pred CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCc
Q 003296 111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPI 190 (833)
Q Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~ 190 (833)
+|+|++ +|. .+++|++|+|++|.|++ +|. ..+.|+.|+|++|++++ +|.
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-------------------------lp~-~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-------------------------LPE-LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-------------------------CCC-CCTTCCEEECCSSCCSC-CCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-------------------------CCC-cCCCcCEEECCCCCCCC-cch
Confidence 555554 222 34555555555555543 333 33458889999998887 555
Q ss_pred cCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCc
Q 003296 191 DLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLT 270 (833)
Q Consensus 191 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 270 (833)
|. ++|+.|+|++|.|+ .+|. +..+| +.....|+.|+|++|+|+. +|..+..+++|+
T Consensus 178 -l~--~~L~~L~Ls~N~L~-~lp~-~~~~L------------------~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~ 233 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLE-SLPA-VPVRN------------------HHSEETEIFFRCRENRITH-IPENILSLDPTC 233 (571)
T ss_dssp -CC--TTCCEEECCSSCCS-SCCC-CC--------------------------CCEEEECCSSCCCC-CCGGGGGSCTTE
T ss_pred -hh--CCCCEEECcCCCCC-chhh-HHHhh------------------hcccccceEEecCCCccee-cCHHHhcCCCCC
Confidence 54 89999999999988 4443 22110 1223446999999999985 577777799999
Q ss_pred EEEccCCccCCCChhhhCCCC
Q 003296 271 LLNLAQNELNGSLPIQLGSLG 291 (833)
Q Consensus 271 ~L~L~~N~l~~~~p~~~~~l~ 291 (833)
.|+|++|++++.+|..+..+.
T Consensus 234 ~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 234 TIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EEECCSSSCCHHHHHHHHHHH
T ss_pred EEEeeCCcCCCcCHHHHHHhh
Confidence 999999999998888876643
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=8.7e-20 Score=192.28 Aligned_cols=171 Identities=22% Similarity=0.284 Sum_probs=127.9
Q ss_pred CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
.+++|+.|++++|.+..++.+..+++|++|+|++|+++++.+ |..+++|++|+|++|+++++ ..+..+++|++|+|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEEC
Confidence 456778888888888877777778888888888888877655 77888888888888888753 23777888888888
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296 86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS 165 (833)
Q Consensus 86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~ 165 (833)
++|.+++. ..+..+++|+.|+|++|++++. ..++.+++|++|+|++|.+++..| +..+++|+.|++++|.+++.
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 88888754 4677788888888888888765 567788888888888888876655 77788888888888887753
Q ss_pred CChhhhhcCCEEecccccccc
Q 003296 166 VPGGITRFLRNLDLSYNKLLG 186 (833)
Q Consensus 166 ~p~~~~~~L~~L~Ls~N~l~~ 186 (833)
-.-.-++.|+.|++++|++..
T Consensus 194 ~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGTTCTTCSEEEEEEEEEEC
T ss_pred hhhccCCCCCEEECcCCcccC
Confidence 221224567888888887764
No 360
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=4.6e-19 Score=178.48 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=132.0
Q ss_pred CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296 32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA 111 (833)
Q Consensus 32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 111 (833)
-+.+++++|.++.+... +. ++|+.|+|++|+|+++.+..|..+++|++|+|++|+|+++.|..|.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~~iP~~-l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTN-LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCSSCCSS-CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcCcCCCc-cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 36899999999876543 32 6899999999999998888999999999999999999999999999999999999999
Q ss_pred CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCcc
Q 003296 112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPID 191 (833)
Q Consensus 112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~ 191 (833)
|+|+.+.+..|.++++|++|+|++|.|++..|..|..+++ |+.|+|++|++++..+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~----------------------L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN----------------------LNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----------------------CCEEECCSSCCSCCCTTT
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC----------------------CCEEECCCCcCCEECHHH
Confidence 9999888888999999999999999999988888877665 556666667776666667
Q ss_pred CCCCCCCCEEecccccCc
Q 003296 192 LLSHPNLQTIDLSVNMLE 209 (833)
Q Consensus 192 ~~~~~~L~~L~Ls~N~l~ 209 (833)
|..+++|++|+|++|.+.
T Consensus 148 ~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTCTTCCEEECCSSCEE
T ss_pred HhCCCCCCEEEeCCCCcC
Confidence 778888888888888875
No 361
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=2.7e-19 Score=206.60 Aligned_cols=170 Identities=24% Similarity=0.327 Sum_probs=94.4
Q ss_pred CCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc
Q 003296 7 IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS 86 (833)
Q Consensus 7 l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 86 (833)
+++|+.|++++|.+..++.|..+++|+.|+|++|+|+++.+ |..+++|+.|+|++|.|+++ | .+..+++|++|+|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEec
Confidence 45555566666666555555556666666666666655444 55566666666666665542 2 45555666666666
Q ss_pred CCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296 87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV 166 (833)
Q Consensus 87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~ 166 (833)
+|.|+++ ..+..+++|+.|+|++|.|+++ ..|+.+++|+.|+|++|.|++..| +..+++
T Consensus 118 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~--------------- 176 (605)
T 1m9s_A 118 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK--------------- 176 (605)
T ss_dssp TSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTT---------------
T ss_pred CCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCC---------------
Confidence 6655542 3355555666666666655543 345555666666666665555444 444444
Q ss_pred ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcc
Q 003296 167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG 210 (833)
Q Consensus 167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~ 210 (833)
|+.|+|++|++.+. ..+..+++|+.|+|++|.+.+
T Consensus 177 -------L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 177 -------LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -------CCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred -------CCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 55555555555443 234555556666666665543
No 362
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1.8e-19 Score=208.06 Aligned_cols=189 Identities=24% Similarity=0.275 Sum_probs=147.5
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 89 (833)
+..++++.+.+..+..+..+++|+.|+|++|.|..+. .|..+++|+.|+|++|+|+++.| +..+++|+.|+|++|.
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 4455677888888766778888999999999988654 58889999999999999987655 8888999999999999
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChh
Q 003296 90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG 169 (833)
Q Consensus 90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~ 169 (833)
|+++ ..+..+++|+.|+|++|.|+++ ..|..+++|+.|+|++|.|++. ..+..++
T Consensus 99 l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~------------------- 153 (605)
T 1m9s_A 99 IKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT------------------- 153 (605)
T ss_dssp CCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-------------------
T ss_pred CCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccC-------------------
Confidence 8853 3688889999999999998864 4588889999999999988764 3344333
Q ss_pred hhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccC
Q 003296 170 ITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIG 232 (833)
Q Consensus 170 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~ 232 (833)
.|+.|+|++|++.+..| +..+++|+.|+|++|.+++...-.-.++|+.|++++|.+.+
T Consensus 154 ---~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 154 ---KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ---TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred ---CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence 37778888888887766 88899999999999999864221222677777777777654
No 363
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.5e-19 Score=195.11 Aligned_cols=156 Identities=27% Similarity=0.254 Sum_probs=139.6
Q ss_pred CCCCEEECCCCCCCCcc--ccc-CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296 8 DGLKLLNFSKNELVSLP--TFN-GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV 84 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~f~-~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 84 (833)
..++.|+|++|+|+.++ .|. .+++|+.|+|++|+|+++.+.+|.++++|++|+|++|+|+.+.+..|..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 45899999999999985 366 899999999999999999999999999999999999999999899999999999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccc---cCCCCCcEEECcCCcCCCCCCcccccCCcc--Ccccccc
Q 003296 85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI---GELSKLEVLILSANNLDGRLPTSLASITTL--SRFAANQ 159 (833)
Q Consensus 85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~l~l~~ 159 (833)
|++|+|+++.|..|.++++|+.|+|++|+|+++.+..| ..+++|+.|+|++|+|++..+..|..++.+ +.|++.+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 99999999999999999999999999999998777667 679999999999999998777778777763 6677777
Q ss_pred cccc
Q 003296 160 NKFS 163 (833)
Q Consensus 160 n~l~ 163 (833)
|.+.
T Consensus 199 N~~~ 202 (361)
T 2xot_A 199 NPLE 202 (361)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 7665
No 364
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=8e-19 Score=176.71 Aligned_cols=134 Identities=20% Similarity=0.224 Sum_probs=85.7
Q ss_pred CCEEECCCCCCCCCCC-ccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeecc
Q 003296 245 LTYLELDNNSFTGMIP-QQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNIS 323 (833)
Q Consensus 245 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 323 (833)
+++|+|++|++++..+ ..|..+++|+.|+|++|.|++..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3455555555554432 335555555555555555555555555555666666666666665566666666777777777
Q ss_pred CCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCcc
Q 003296 324 WNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT 378 (833)
Q Consensus 324 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 378 (833)
+|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++.+.
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 7777766666777777777777777777776677777777777777777777654
No 365
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=6.6e-20 Score=190.05 Aligned_cols=170 Identities=24% Similarity=0.295 Sum_probs=134.2
Q ss_pred CCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc
Q 003296 7 IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS 86 (833)
Q Consensus 7 l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 86 (833)
+.++..+++++|.++.++.+..+++|++|++++|+|+.+. .|..+++|++|+|++|+|+++.+ |..+++|++|+|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3456667888999998888888999999999999998654 68889999999999999987655 8899999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296 87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV 166 (833)
Q Consensus 87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~ 166 (833)
+|++++..+ +.. ++|+.|+|++|+|++. ..++.+++|++|+|++|+|++. + .+..+++
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~--------------- 151 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSK--------------- 151 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTT---------------
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCC---------------
Confidence 999986433 233 8899999999999864 3588899999999999998864 2 3444444
Q ss_pred ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCccc
Q 003296 167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS 211 (833)
Q Consensus 167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 211 (833)
|+.|+|++|++.+. ..+..+++|+.|++++|.+++.
T Consensus 152 -------L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 152 -------LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -------CCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -------CCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 66666777776665 4577788888899988888744
No 366
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=4.4e-19 Score=175.46 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=99.3
Q ss_pred CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296 6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL 85 (833)
Q Consensus 6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 85 (833)
.+++|+.|++++|.++.+|.+..+++|++|++++|.++.+ ..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3456777777777777766666777777777777766533 35667777777777777777666666777777777777
Q ss_pred cCCcCcccCCccccCCCCCCEEeccCCc-CCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccc
Q 003296 86 SGNAFHGEIPKGIADYRNLTLIDLSANN-LSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF 162 (833)
Q Consensus 86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l 162 (833)
++|.+++..|..+..+++|++|+|++|. ++. +| .+..+++|++|++++|.+++.. .+..+++|+.|++++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 7777776666677777777777777776 543 33 5667777777777777776532 455555555555544444
No 367
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.78 E-value=1.6e-19 Score=186.66 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=106.1
Q ss_pred cCCccccccCcccEEEEEEc-CCCce--EEEEEccccchhhhc--------------------cChhHHHHHHHHHhcCC
Q 003296 557 ANPLNVELKTRFSTYYKAVM-PSGMS--YFIKKLNWSDKIFQL--------------------GSHHKFDKELEVLGKLS 613 (833)
Q Consensus 557 ~~~~~~ig~g~~g~vy~~~~-~~~~~--vavK~~~~~~~~~~~--------------------~~~~~~~~E~~~l~~l~ 613 (833)
|+..+.||+|+||.||+|.. .+|+. ||||+++........ .....+.+|+++|++++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999998 78999 999987422111000 01136889999999999
Q ss_pred CCCcccceEEEecCCceEEEEeeCCC-C----ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCc
Q 003296 614 NSNVMTPLAYVLASDSAYLFYEYAPK-G----TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST 688 (833)
Q Consensus 614 H~niv~~~~~~~~~~~~~lv~ey~~~-g----~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~ 688 (833)
|+++....-+.. +..+|||||+.+ | +|.++... .++..+..++.|++.||.|||. ..+|+||||||
T Consensus 129 ~~~i~~p~~~~~--~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlkp 199 (258)
T 1zth_A 129 EAGVSVPQPYTY--MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQ--EAELVHADLSE 199 (258)
T ss_dssp HTTCCCCCEEEE--ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCST
T ss_pred hCCCCCCeEEEc--CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCCH
Confidence 887532222222 467999999942 4 66665432 2345667899999999999994 35799999999
Q ss_pred cceeeCCCCCceeccceeeeee
Q 003296 689 RNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 689 ~Nill~~~~~~ki~dfgl~~~~ 710 (833)
+|||++. .++|+|||+|...
T Consensus 200 ~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 200 YNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp TSEEESS--SEEECCCTTCEET
T ss_pred HHEEEcC--cEEEEECcccccC
Confidence 9999998 9999999999764
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.6e-18 Score=173.13 Aligned_cols=156 Identities=21% Similarity=0.188 Sum_probs=131.7
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296 31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS 110 (833)
Q Consensus 31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 110 (833)
.-+.++.++++++.+.... .++|++|+|++|+|+++.|..|..+++|++|+|++|+|+.+.+..|..+++|++|+|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4678999999998766533 3899999999999999989999999999999999999998877889999999999999
Q ss_pred CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCc
Q 003296 111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPI 190 (833)
Q Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~ 190 (833)
+|+|+++.+..|..+++|++|+|++|.|+ .+|..+..+++ |+.|+|++|++.+..+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~----------------------L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH----------------------LTHLALDQNQLKSIPHG 153 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT----------------------CSEEECCSSCCCCCCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC----------------------CCEEECCCCcCCccCHH
Confidence 99999888888999999999999999998 56666655554 66677777777766666
Q ss_pred cCCCCCCCCEEecccccCcccC
Q 003296 191 DLLSHPNLQTIDLSVNMLEGSL 212 (833)
Q Consensus 191 ~~~~~~~L~~L~Ls~N~l~~~~ 212 (833)
.|..+++|+.|+|++|.+....
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTTB
T ss_pred HHhCCCCCCEEEeeCCCccCCc
Confidence 7778888999999988876543
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=6.4e-19 Score=182.62 Aligned_cols=151 Identities=23% Similarity=0.365 Sum_probs=133.5
Q ss_pred CCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296 4 CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL 83 (833)
Q Consensus 4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 83 (833)
+..+++|+.|++++|.++.++.+..+++|+.|+|++|+|+++.+ |..+++|++|+|++|+|+++.+.. . ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~--~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP--S-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC--C-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc--c-CcccEE
Confidence 34578999999999999999999999999999999999998876 999999999999999999754432 3 899999
Q ss_pred EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccc
Q 003296 84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS 163 (833)
Q Consensus 84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~ 163 (833)
+|++|.+++. ..+..+++|+.|+|++|+|++. + .++.+++|++|+|++|.+++. ..+..+++|+.|++++|.++
T Consensus 112 ~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 9999999974 4699999999999999999975 3 699999999999999999977 67888888888888888876
Q ss_pred cc
Q 003296 164 GS 165 (833)
Q Consensus 164 ~~ 165 (833)
+.
T Consensus 186 ~~ 187 (263)
T 1xeu_A 186 NE 187 (263)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 370
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=2.6e-18 Score=169.03 Aligned_cols=132 Identities=21% Similarity=0.263 Sum_probs=121.2
Q ss_pred CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccc-cccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296 11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINL-QFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89 (833)
Q Consensus 11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~-~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 89 (833)
+.+++++|.++.+|. .-..+|++|+|++|+|+++.+. .|..+++|++|+|++|+|+++.|..|.++++|++|+|++|+
T Consensus 11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 789999999999986 2234899999999999988875 59999999999999999999999999999999999999999
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCC
Q 003296 90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP 143 (833)
Q Consensus 90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 143 (833)
|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+++..+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999999999999999999999999999999999999999999999999986543
No 371
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=1.6e-20 Score=215.47 Aligned_cols=121 Identities=26% Similarity=0.268 Sum_probs=66.5
Q ss_pred CCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccC
Q 003296 245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISW 324 (833)
Q Consensus 245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 324 (833)
|+.|+|++|.|+++ |. |+.+++|+.|+|++|.|+ .+|..++.+++|+.|+|++|.|++ +| .|..+++|++|+|++
T Consensus 443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 45555555555542 33 555555555555555555 445555555555555555555554 34 455566666666666
Q ss_pred CcCcccC-ccccccCCCCCEEEccCCccccccCcc---ccCCCCCCEEEc
Q 003296 325 NSLSGSI-PSFLSNLTNLVNLNLRQNNLNGSIPNS---ITNMRSLIELQL 370 (833)
Q Consensus 325 N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L 370 (833)
|.|++.. |..|..+++|+.|+|++|++++..|.. +..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6666554 556666666666666666665543321 233566666643
No 372
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=7.2e-19 Score=189.02 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=63.6
Q ss_pred CCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCc-EEEccCCcCCCcCchhhcCCCcCcee
Q 003296 242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQ-VMNLQLNKLSGEIPSQFSQLKLLSTM 320 (833)
Q Consensus 242 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L 320 (833)
+++|+.|+|++|+++.+.+.+|.+|++|+.++|.+| +..+.+..|.++.+|+ .+++.+ .++.+.+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455666666665555555555666666666666555 4444455566666666 666655 5555556667777777777
Q ss_pred eccCCcCcccCccccccCCCCCEEE
Q 003296 321 NISWNSLSGSIPSFLSNLTNLVNLN 345 (833)
Q Consensus 321 ~Ls~N~l~~~~~~~~~~l~~L~~L~ 345 (833)
+++.|+++.+.+.+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7777777666666777777777665
No 373
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=8.1e-19 Score=188.62 Aligned_cols=289 Identities=12% Similarity=0.065 Sum_probs=193.5
Q ss_pred CCCCCEEECCCCCCCCcccccccC-CCCCCEEeCcCCcCC--CCCCcccCCCCCCCEEEccCCcCcccCCccccC-----
Q 003296 29 FAGLEVLDFSSNNLNGNINLQFDE-LVSLKSLNLSKNKFN--GFLPINLGKTKALEELVLSGNAFHGEIPKGIAD----- 100 (833)
Q Consensus 29 l~~L~~L~Ls~N~l~~~~~~~f~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~----- 100 (833)
+.+++.|.++++ +....-..+.. +++|++|||++|+|. ...+..+ +.+..+.+..|. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhccccccc
Confidence 446777777754 22111122333 677888888888877 3222222 224555555552 44566666
Q ss_pred ---CCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEE
Q 003296 101 ---YRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNL 177 (833)
Q Consensus 101 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L 177 (833)
+++|+.|+|++ .++.+.+.+|.++++|+.|+|++|.++.+.+..|.++.++..+....+...
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~-------------- 161 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY-------------- 161 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH--------------
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh--------------
Confidence 88888888888 777777788888888888888888887777777776655544433321110
Q ss_pred ecccccccccCCccCCCCCCCC-EEecccccCcccCCCCCCcCCcEEEcCCccccCCCCcccc---CCCCCCCEEECCCC
Q 003296 178 DLSYNKLLGVIPIDLLSHPNLQ-TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATF---TSLEKLTYLELDNN 253 (833)
Q Consensus 178 ~Ls~N~l~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f---~~l~~L~~L~L~~N 253 (833)
.......+..|.++..|+ .+++.... .++...+ ....+++.+.+.++
T Consensus 162 ----~~~~~i~~~~f~~~~~L~~~i~~~~~~-------------------------~l~~~~~~~~~~~~~~~~l~~~~~ 212 (329)
T 3sb4_A 162 ----RFKNRWEHFAFIEGEPLETTIQVGAMG-------------------------KLEDEIMKAGLQPRDINFLTIEGK 212 (329)
T ss_dssp ----HTSTTTTTSCEEESCCCEEEEEECTTC-------------------------CHHHHHHHTTCCGGGCSEEEEEEC
T ss_pred ----hccccccccccccccccceeEEecCCC-------------------------cHHHHHhhcccCccccceEEEeee
Confidence 001112223344444454 33332211 0111111 12456667776655
Q ss_pred CCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCc-eeeccCCcCcccCc
Q 003296 254 SFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS-TMNISWNSLSGSIP 332 (833)
Q Consensus 254 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~ 332 (833)
-...........|++|+.++|++|+++...+..|.++.+|+.+++.+| ++.+.+.+|.++.+|+ .+++.+ .++.+.+
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch
Confidence 222111111224899999999999999878888999999999999998 8888889999999999 999998 7887888
Q ss_pred cccccCCCCCEEEccCCccccccCccccCCCCCCEEEc
Q 003296 333 SFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQL 370 (833)
Q Consensus 333 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 370 (833)
.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999999999999999888899999999999874
No 374
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.3e-18 Score=206.06 Aligned_cols=185 Identities=21% Similarity=0.214 Sum_probs=117.8
Q ss_pred CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCC---------cccccccCCCCCCEEeCcCCcCCCCCCcccCCCC
Q 003296 8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNG---------NINLQFDELVSLKSLNLSKNKFNGFLPINLGKTK 78 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~---------~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 78 (833)
+.++.|+|++|.+..++. ..|+.++|+.|.|.+ +.+..|..+++|+.|+|++|.|.. +|..+..++
T Consensus 173 ~~~~~l~L~~n~~~~~~~----~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ----ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGGCC
T ss_pred CccceEEeeCCCCCcchh----hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcCCC
Confidence 457889999999887642 123344444444433 457889999999999999999995 565666899
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccc
Q 003296 79 ALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAAN 158 (833)
Q Consensus 79 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~ 158 (833)
+|++|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|++|++|++|+|++|.|+ .+|..|+.+++|+.|+++
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 9999999999999 78899999999999999999999 67999999999999999999998 668889999999999999
Q ss_pred cccccccCChhhhh---cCCEEecccccccccCCccCCCCCCCCEEecccc
Q 003296 159 QNKFSGSVPGGITR---FLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVN 206 (833)
Q Consensus 159 ~n~l~~~~p~~~~~---~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N 206 (833)
+|.|++.+|..+.. .+..|+|++|.+.+.+|. .|+.|+++.|
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 99999888876622 123467888888876664 4556666666
No 375
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=2.8e-17 Score=161.61 Aligned_cols=129 Identities=22% Similarity=0.255 Sum_probs=117.5
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 89 (833)
-+.+++++|.|+.+|. .-.++|+.|+|++|+|+.+ |..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+
T Consensus 12 ~~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3689999999999985 2347899999999999855 4789999999999999999999989999999999999999999
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC
Q 003296 90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG 140 (833)
Q Consensus 90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 140 (833)
|+++.|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999999999999999999999999998888889999999999999998874
No 376
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=8.4e-18 Score=166.22 Aligned_cols=154 Identities=17% Similarity=0.285 Sum_probs=113.0
Q ss_pred cCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 003296 27 NGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL 106 (833)
Q Consensus 27 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 106 (833)
..+++|+.|++++|.|+.+. .+..+++|++|++++|.++. +..+..+++|++|+|++|.+++..+..|+.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45677888888888888544 57788888888888887763 346788888888888888888777888888888888
Q ss_pred EeccCCcCCccCCccccCCCCCcEEECcCCc-CCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccccccc
Q 003296 107 IDLSANNLSGSVPDRIGELSKLEVLILSANN-LDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL 185 (833)
Q Consensus 107 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~ 185 (833)
|+|++|++++..|..|+.+++|++|+|++|. ++. +| .+..+++ |+.|++++|++.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~----------------------L~~L~l~~n~i~ 172 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPE----------------------LKSLNIQFDGVH 172 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSS----------------------CCEEECTTBCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCC----------------------CCEEECCCCCCc
Confidence 8888888887777888888888888888887 543 33 4555444 566666666665
Q ss_pred ccCCccCCCCCCCCEEecccccCcc
Q 003296 186 GVIPIDLLSHPNLQTIDLSVNMLEG 210 (833)
Q Consensus 186 ~~~~~~~~~~~~L~~L~Ls~N~l~~ 210 (833)
+.. .+..+++|++|++++|++.+
T Consensus 173 ~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 173 DYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCT--TGGGCSSCCEEEECBC----
T ss_pred ChH--HhccCCCCCEEEeeCcccCC
Confidence 532 56667888888888887753
No 377
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=3e-17 Score=159.21 Aligned_cols=134 Identities=23% Similarity=0.244 Sum_probs=121.5
Q ss_pred CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296 9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN 88 (833)
Q Consensus 9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 88 (833)
..+.+++++|.++.+|. ...++|+.|++++|+++++.+..|..+++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus 8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 35789999999999984 34579999999999999998888999999999999999999888888999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCC
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP 143 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 143 (833)
.|++..+..|..+++|++|+|++|+|+++.+..|..+++|++|+|++|.+++..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9998888889999999999999999998888788999999999999999986543
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.3e-17 Score=163.89 Aligned_cols=132 Identities=18% Similarity=0.233 Sum_probs=121.3
Q ss_pred CEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCc-ccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296 33 EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPI-NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA 111 (833)
Q Consensus 33 ~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 111 (833)
+.+++++|+++.+....+ .+|++|+|++|+|+++.+. .|..+++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 789999999986655333 3999999999999988775 589999999999999999999999999999999999999
Q ss_pred CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296 112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167 (833)
Q Consensus 112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 167 (833)
|+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|++++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999999999999999999999999999999999999999999987655
No 379
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.7e-20 Score=212.55 Aligned_cols=204 Identities=20% Similarity=0.164 Sum_probs=154.2
Q ss_pred cCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCc-------------CCCCCCcccccCCccCccc-cccccccc
Q 003296 99 ADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANN-------------LDGRLPTSLASITTLSRFA-ANQNKFSG 164 (833)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~l~-l~~n~l~~ 164 (833)
...++|+.|+|++|+|+ .+|..++++++|+.|++++|. +.+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 44566666666666665 456666666666666665553 4566677777777777777 5555442
Q ss_pred cCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCC
Q 003296 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK 244 (833)
Q Consensus 165 ~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~ 244 (833)
.|+.+.+++|.+....+ ..|+.|+|++|.+++ +|. |..+++
T Consensus 424 --------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-----------------------lp~--~~~l~~ 464 (567)
T 1dce_A 424 --------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-----------------------LCH--LEQLLL 464 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-----------------------CCC--GGGGTT
T ss_pred --------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-----------------------CcC--cccccc
Confidence 35566677777765433 247777777777652 332 677889
Q ss_pred CCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcC-chhhcCCCcCceeecc
Q 003296 245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEI-PSQFSQLKLLSTMNIS 323 (833)
Q Consensus 245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls 323 (833)
|+.|+|++|+|+ .+|..|+.+++|+.|+|++|.|++ +| .++.+++|+.|+|++|+|++.. |..|..+++|+.|+|+
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 999999999999 668899999999999999999986 66 8999999999999999999887 8999999999999999
Q ss_pred CCcCcccCccc---cccCCCCCEEEc
Q 003296 324 WNSLSGSIPSF---LSNLTNLVNLNL 346 (833)
Q Consensus 324 ~N~l~~~~~~~---~~~l~~L~~L~L 346 (833)
+|.+++..|.. +..+++|+.|++
T Consensus 542 ~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 542 GNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999776532 345889999875
No 380
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.1e-18 Score=202.79 Aligned_cols=166 Identities=19% Similarity=0.176 Sum_probs=123.1
Q ss_pred CCCEEECCCCCCCCc----------c-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCC
Q 003296 9 GLKLLNFSKNELVSL----------P-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKT 77 (833)
Q Consensus 9 ~L~~L~ls~N~l~~i----------~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l 77 (833)
.|+.++|+.|.|..+ + .|..++.|+.|+|++|.|..+.+. +.++++|++|+|++|.|+ .+|..|+.+
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 355666666665442 2 488899999999999999965554 458999999999999999 678899999
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCcc-Cccc
Q 003296 78 KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL-SRFA 156 (833)
Q Consensus 78 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~l~ 156 (833)
++|++|+|++|.|+ .+|..|+++++|++|+|++|.|+ .+|..|++|++|++|+|++|.|++.+|..+..+... ..++
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 99999999999999 67999999999999999999998 567789999999999999999999999888765332 3478
Q ss_pred cccccccccCChhhhhcCCEEecccc
Q 003296 157 ANQNKFSGSVPGGITRFLRNLDLSYN 182 (833)
Q Consensus 157 l~~n~l~~~~p~~~~~~L~~L~Ls~N 182 (833)
+.+|.+++.+|. .|+.|+++.|
T Consensus 348 l~~N~l~~~~p~----~l~~l~l~~n 369 (727)
T 4b8c_D 348 LRDNRPEIPLPH----ERRFIEINTD 369 (727)
T ss_dssp HHHCCCCCCCCC----C---------
T ss_pred hccCcccCcCcc----ccceeEeecc
Confidence 999999988875 4667888877
No 381
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1e-15 Score=167.97 Aligned_cols=128 Identities=11% Similarity=0.114 Sum_probs=68.3
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccC-----CCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCc
Q 003296 244 KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN-----GSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318 (833)
Q Consensus 244 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 318 (833)
+|+.+.| .+.++.+...+|.+|++|+.+++.+|.+. ...+..|.++.+|+.+++. +.++.+....|.++.+|+
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence 4444444 22333333444444444444444444332 2233445555555555555 335545555666666666
Q ss_pred eeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCC-CCCEEEccCCcC
Q 003296 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMR-SLIELQLGGNQL 375 (833)
Q Consensus 319 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l 375 (833)
.++|..| ++.+-+.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6666443 554555666666 666666666666655556666663 566666666543
No 382
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1.3e-15 Score=167.06 Aligned_cols=270 Identities=12% Similarity=0.138 Sum_probs=140.1
Q ss_pred CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296 28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI 107 (833)
Q Consensus 28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 107 (833)
.+..++.+.+.+ .++.+...+|.+. +|+.++|..| ++.+...+|.+. +|+++.|.. .++.+.+.+|.++.+|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 345566666653 3555556666664 5666666554 555556666653 466666664 4555555666666666666
Q ss_pred eccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhh-hhcCCEEecccccccc
Q 003296 108 DLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI-TRFLRNLDLSYNKLLG 186 (833)
Q Consensus 108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~-~~~L~~L~Ls~N~l~~ 186 (833)
+|+.|+++.+...+|. ..+|+.+.|..+ ++.+....|.++.+|+.+.+..| ++..-...+ ...|+.+.| .+.+..
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~ 261 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTN 261 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCE
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccE
Confidence 6666666655555565 366666666533 55555556666665555554432 111111111 012444444 233444
Q ss_pred cCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCC
Q 003296 187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC 266 (833)
Q Consensus 187 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 266 (833)
+.+..|..+++|+.+++.+|.+... . ...++..+|.++++|+.++|. +.++.+...+|.+|
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~-----------------~-~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c 322 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDD-----------------P-EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN 322 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCC-----------------T-TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC
T ss_pred EChhHhhCCCCCCEEEeCCccccCC-----------------c-ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC
Confidence 4444555555555555555443200 0 012344455555555555555 33444445555555
Q ss_pred CCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCC-CCCEEE
Q 003296 267 RSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLT-NLVNLN 345 (833)
Q Consensus 267 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~ 345 (833)
.+|+.+.|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ +++.|+
T Consensus 323 ~~L~~l~lp~~-------------------------l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 323 RKVTQLTIPAN-------------------------VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp CSCCEEEECTT-------------------------CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred CCccEEEECcc-------------------------ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence 55555555332 333344455555 555555555555544455555553 555666
Q ss_pred ccCCcc
Q 003296 346 LRQNNL 351 (833)
Q Consensus 346 L~~N~l 351 (833)
+..+.+
T Consensus 377 vp~~~~ 382 (401)
T 4fdw_A 377 VPAESV 382 (401)
T ss_dssp ECGGGH
T ss_pred eCHHHH
Confidence 655544
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=3.6e-17 Score=157.21 Aligned_cols=133 Identities=23% Similarity=0.222 Sum_probs=75.0
Q ss_pred CCCCCEEECCCCCCC-CcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296 29 FAGLEVLDFSSNNLN-GNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI 107 (833)
Q Consensus 29 l~~L~~L~Ls~N~l~-~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 107 (833)
.++|+.|+|++|+++ +.+|..|..+++|++|+|++|.|+++ ..|..+++|++|+|++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 345566666666655 33444455556666666666665544 455555666666666666655555555555666666
Q ss_pred eccCCcCCccCC-ccccCCCCCcEEECcCCcCCCCCC---cccccCCccCcccccccccc
Q 003296 108 DLSANNLSGSVP-DRIGELSKLEVLILSANNLDGRLP---TSLASITTLSRFAANQNKFS 163 (833)
Q Consensus 108 ~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~l~l~~n~l~ 163 (833)
+|++|.|++..+ ..|..+++|++|+|++|.+++..+ ..+..+++|+.|+++.|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666554322 455556666666666666654444 35555666666666555554
No 384
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=2.6e-15 Score=165.47 Aligned_cols=305 Identities=13% Similarity=0.103 Sum_probs=127.5
Q ss_pred cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 003296 25 TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNL 104 (833)
Q Consensus 25 ~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 104 (833)
+|.++.+|+.+.|.. .++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..+...+|.+...+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 355566666666653 355555556666666666666533 44445555555555655555433 333444444444333
Q ss_pred CEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhh--hhcCCEEecccc
Q 003296 105 TLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI--TRFLRNLDLSYN 182 (833)
Q Consensus 105 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls~N 182 (833)
....... +..+...+|.++++|+.+.+..+ ++.+....|.++.+|+.+.+..+ +...-...+ ...|+.+.+..+
T Consensus 143 ~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 143 EITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 3222221 12233344555555555555433 22234444555555555544333 111111111 122444444333
Q ss_pred cccccCCccCCCCCCCCEEecccccCcccCCCCC--CcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCC
Q 003296 183 KLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIP 260 (833)
Q Consensus 183 ~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~ 260 (833)
... +...+....+|+.+.+..+. +..-...+ ...++.+.+..+.. .+....|..+..++.+.+..+.+ ..
T Consensus 219 ~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~ 290 (394)
T 4fs7_A 219 LYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PE 290 (394)
T ss_dssp CCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CT
T ss_pred ceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee---cc
Confidence 211 12223334556655554321 10000011 02233333322211 13333444444444444433321 12
Q ss_pred ccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCC
Q 003296 261 QQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTN 340 (833)
Q Consensus 261 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 340 (833)
..|..+.+|+.+.+..+ +...-...|.++.+|+.+++..+ ++.+...+|.++.+|+.+++..| ++.+-..+|.++++
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 23444444444444332 22223334444444444444322 33333444444445555544433 33333444445555
Q ss_pred CCEEEcc
Q 003296 341 LVNLNLR 347 (833)
Q Consensus 341 L~~L~L~ 347 (833)
|+.+++.
T Consensus 368 L~~i~lp 374 (394)
T 4fs7_A 368 LKKVELP 374 (394)
T ss_dssp CCEEEEE
T ss_pred CCEEEEC
Confidence 5555444
No 385
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=9.7e-17 Score=154.18 Aligned_cols=134 Identities=21% Similarity=0.176 Sum_probs=116.1
Q ss_pred CCCCCCEEECCCCCCC--Cccc-ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296 6 GIDGLKLLNFSKNELV--SLPT-FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE 82 (833)
Q Consensus 6 ~l~~L~~L~ls~N~l~--~i~~-f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 82 (833)
..++|+.|++++|.++ .+|. |..+++|++|+|++|.|+++ ..|..+++|++|+|++|+|++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4578999999999998 6764 68889999999999999887 78899999999999999999878888888999999
Q ss_pred EEccCCcCcccCC-ccccCCCCCCEEeccCCcCCccCC---ccccCCCCCcEEECcCCcCCCC
Q 003296 83 LVLSGNAFHGEIP-KGIADYRNLTLIDLSANNLSGSVP---DRIGELSKLEVLILSANNLDGR 141 (833)
Q Consensus 83 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~ 141 (833)
|+|++|.+++..+ ..+..+++|+.|+|++|.+++..+ ..|..+++|++|++++|.+...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9999999986533 788999999999999999987665 5889999999999999988743
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=8.9e-17 Score=151.05 Aligned_cols=127 Identities=21% Similarity=0.238 Sum_probs=83.8
Q ss_pred CCCCCEEECCCCCCC-CcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296 29 FAGLEVLDFSSNNLN-GNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI 107 (833)
Q Consensus 29 l~~L~~L~Ls~N~l~-~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 107 (833)
.++|+.|++++|.++ +..+..|..+++|++|+|++|.|+++ ..|..+++|++|+|++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456677777777776 45555666777777777777777655 556667777777777777766566666667777777
Q ss_pred eccCCcCCcc-CCccccCCCCCcEEECcCCcCCCCCC---cccccCCccCcccc
Q 003296 108 DLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLP---TSLASITTLSRFAA 157 (833)
Q Consensus 108 ~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~l~l 157 (833)
++++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 7777777653 23566777777777777777765544 45566666555554
No 387
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=152.52 Aligned_cols=129 Identities=22% Similarity=0.215 Sum_probs=116.5
Q ss_pred CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296 32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA 111 (833)
Q Consensus 32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 111 (833)
-+++++++|+|+.+....+ ++|++|+|++|+|+. +|..|..+++|++|+|++|.|+++.+..|.++++|+.|+|++
T Consensus 12 ~~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 3689999999997654432 689999999999984 668999999999999999999999999999999999999999
Q ss_pred CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296 112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164 (833)
Q Consensus 112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~ 164 (833)
|+|+++.|..|.++++|++|+|++|.|+...+..|..+++|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999999999999999999999999998888889999998888888888764
No 388
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=6.7e-17 Score=151.92 Aligned_cols=128 Identities=24% Similarity=0.226 Sum_probs=116.0
Q ss_pred CCCCCCEEECCCCCCC--Cccc-ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296 6 GIDGLKLLNFSKNELV--SLPT-FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE 82 (833)
Q Consensus 6 ~l~~L~~L~ls~N~l~--~i~~-f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 82 (833)
..++|+.|++++|.++ .+|. |..+++|++|++++|+|+++ ..|..+++|++|+|++|.|++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999999 5764 78899999999999999987 78999999999999999999888888888999999
Q ss_pred EEccCCcCccc-CCccccCCCCCCEEeccCCcCCccCC---ccccCCCCCcEEECcC
Q 003296 83 LVLSGNAFHGE-IPKGIADYRNLTLIDLSANNLSGSVP---DRIGELSKLEVLILSA 135 (833)
Q Consensus 83 L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~ 135 (833)
|+|++|.+++. .+..+..+++|++|++++|.+++..+ ..|+.+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999974 45889999999999999999998766 6899999999999874
No 389
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=7.1e-17 Score=156.41 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=87.5
Q ss_pred cccccCCCCCCEEECCCCCCCCcccccccCCC-CCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCC
Q 003296 23 LPTFNGFAGLEVLDFSSNNLNGNINLQFDELV-SLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADY 101 (833)
Q Consensus 23 i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 101 (833)
.+.|..+++|+.|+|++|+|+.+ +. +..+. +|++|+|++|.|+++ ..|..+++|++|+|++|.|++..+..|..+
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred HHhcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 34566666777777777777654 32 33333 777777777777654 456667777777777777776555555677
Q ss_pred CCCCEEeccCCcCCccCCc--cccCCCCCcEEECcCCcCCCCCCc----ccccCCccCcccccccccc
Q 003296 102 RNLTLIDLSANNLSGSVPD--RIGELSKLEVLILSANNLDGRLPT----SLASITTLSRFAANQNKFS 163 (833)
Q Consensus 102 ~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~l~l~~n~l~ 163 (833)
++|++|+|++|+|+. +|. .+..+++|++|+|++|.++. .|. .+..+++|+.|+++.|...
T Consensus 88 ~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777777777753 333 56677777777777777763 344 3667777777777776654
No 390
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.66 E-value=1.8e-17 Score=177.18 Aligned_cols=140 Identities=13% Similarity=0.028 Sum_probs=96.9
Q ss_pred cCCccccccCcccEEEEEEcCCCceEEEEEccccchhh----------hccChhHH--------HHHHHHHhcCCCCCcc
Q 003296 557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIF----------QLGSHHKF--------DKELEVLGKLSNSNVM 618 (833)
Q Consensus 557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~----------~~~~~~~~--------~~E~~~l~~l~H~niv 618 (833)
|.....||+|+||.||+|..++|+.||||+++...... ........ .+|...|.++.+..+.
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~ 176 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP 176 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66788999999999999999999999999874221100 00111122 3455555555433332
Q ss_pred cceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC
Q 003296 619 TPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE 698 (833)
Q Consensus 619 ~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~ 698 (833)
...-+.. ...+|||||++|++|.++... + ....++.|++.||.||| ..+||||||||.|||+++++.
T Consensus 177 vp~p~~~--~~~~LVME~i~G~~L~~l~~~------~--~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~dgd 243 (397)
T 4gyi_A 177 VPEPIAQ--SRHTIVMSLVDALPMRQVSSV------P--DPASLYADLIALILRLA---KHGLIHGDFNEFNILIREEKD 243 (397)
T ss_dssp CCCEEEE--ETTEEEEECCSCEEGGGCCCC------S--CHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEEEEC
T ss_pred CCeeeec--cCceEEEEecCCccHhhhccc------H--HHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeCCCC
Confidence 2111111 234799999999998765432 1 23457899999999999 778999999999999987763
Q ss_pred ----------ceeccceeeee
Q 003296 699 ----------PQIGDIELCKV 709 (833)
Q Consensus 699 ----------~ki~dfgl~~~ 709 (833)
+.|+||+-+..
T Consensus 244 ~~d~~~~~~~~~iID~~Q~V~ 264 (397)
T 4gyi_A 244 AEDPSSITLTPIIIXFPQMVS 264 (397)
T ss_dssp SSCTTSEEEEEEECCCTTCEE
T ss_pred cccccccccceEEEEeCCccc
Confidence 67999986654
No 391
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=7.6e-16 Score=149.29 Aligned_cols=134 Identities=22% Similarity=0.210 Sum_probs=119.6
Q ss_pred CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296 31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS 110 (833)
Q Consensus 31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 110 (833)
..+.+++++|+++.+.... .++|++|+|++|+++++.+..|..+++|++|+|++|.+++..+..|..+++|+.|+|+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3578999999998765433 3799999999999999888889999999999999999998888889999999999999
Q ss_pred CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296 111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167 (833)
Q Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 167 (833)
+|+|++..+..|..+++|++|+|++|.|++..+..|..+++|+.|++++|.+++..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998888889999999999999999998877778889999888888888876554
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=1.9e-16 Score=153.43 Aligned_cols=132 Identities=18% Similarity=0.207 Sum_probs=110.1
Q ss_pred CCCCCCCCEEECCCCCCCCcccccCCC-CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296 4 CGGIDGLKLLNFSKNELVSLPTFNGFA-GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE 82 (833)
Q Consensus 4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~-~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 82 (833)
+.++.+|+.|++++|.++.+|.+..+. +|++|||++|+|+++ ..|..+++|++|+|++|+|+++++..|..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 456788999999999999887766655 899999999999876 57888999999999999999876666788999999
Q ss_pred EEccCCcCcccCCc--cccCCCCCCEEeccCCcCCccCCc----cccCCCCCcEEECcCCcCC
Q 003296 83 LVLSGNAFHGEIPK--GIADYRNLTLIDLSANNLSGSVPD----RIGELSKLEVLILSANNLD 139 (833)
Q Consensus 83 L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~ 139 (833)
|+|++|.|+. +|. .+..+++|+.|+|++|.++. .|. .+..+++|++|+++.|.+.
T Consensus 93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999964 454 78889999999999999874 454 4888999999999988764
No 393
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=3.6e-14 Score=156.32 Aligned_cols=316 Identities=11% Similarity=0.060 Sum_probs=242.7
Q ss_pred CCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCc
Q 003296 41 NLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD 120 (833)
Q Consensus 41 ~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 120 (833)
+++.|...+|.++.+|+.+.|.. .++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..+...
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 46778889999999999999974 588888999999999999999865 77677889999999999988765 6667778
Q ss_pred cccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhh--hhcCCEEecccccccccCCccCCCCCCC
Q 003296 121 RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNL 198 (833)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L 198 (833)
+|.+...++...... +.......|.++.+|+.+.+..+.. ..-...+ ...|+.+++..| +..+....|.++..|
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 898887655554433 3334567899999999988865432 1222223 345888888766 565667778888999
Q ss_pred CEEecccccCcccCCCCC-CcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCC
Q 003296 199 QTIDLSVNMLEGSLPQNM-SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN 277 (833)
Q Consensus 199 ~~L~Ls~N~l~~~~p~~~-~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 277 (833)
+.+.+..+...- ....+ ..+++.+.+..+. ..+....|..+..|+.+.+..+... +....|..+..++.+....+
T Consensus 211 ~~i~~~~~~~~i-~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 211 ENMEFPNSLYYL-GDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CBCCCCTTCCEE-CTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred ceeecCCCceEe-ehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 988887765431 11112 2578888776543 2466678889999999999877543 66778999999999988776
Q ss_pred ccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCc
Q 003296 278 ELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN 357 (833)
Q Consensus 278 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 357 (833)
.+. ...|..+.+|+.+.+..+ ++.+...+|.++.+|+.+++.++ ++.+-..+|.++++|+.+++..| ++.+-..
T Consensus 287 ~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 287 IVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp EEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred eec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 543 356788899999998754 66677788999999999999754 77666788999999999999877 7767788
Q ss_pred cccCCCCCCEEEccCC
Q 003296 358 SITNMRSLIELQLGGN 373 (833)
Q Consensus 358 ~~~~l~~L~~L~L~~N 373 (833)
+|.++.+|+.+++..+
T Consensus 361 aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR 376 (394)
T ss_dssp TBTTCTTCCEEEEEGG
T ss_pred HhhCCCCCCEEEECCC
Confidence 9999999999988754
No 394
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=8.8e-15 Score=140.50 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEEC
Q 003296 54 VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLIL 133 (833)
Q Consensus 54 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 133 (833)
++|++|+|++|+|+++.|..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|..+++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444444444444444444444444444444444455555555555555555544445555555555555
Q ss_pred cCCcCCC
Q 003296 134 SANNLDG 140 (833)
Q Consensus 134 s~N~l~~ 140 (833)
++|.++.
T Consensus 110 ~~N~~~c 116 (170)
T 3g39_A 110 LNNPWDC 116 (170)
T ss_dssp CSSCBCT
T ss_pred CCCCCCC
Confidence 5555553
No 395
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=1.7e-14 Score=138.48 Aligned_cols=109 Identities=23% Similarity=0.215 Sum_probs=96.9
Q ss_pred CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296 9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN 88 (833)
Q Consensus 9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 88 (833)
..+.+++++|.|+.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 35789999999999985 22488999999999999999999999999999999999999888888999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCCccC
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLSGSV 118 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 118 (833)
+|+++.+..|..+++|++|+|++|.++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999888888999999999999999987543
No 396
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=2.1e-14 Score=138.37 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=43.4
Q ss_pred CCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEEC
Q 003296 54 VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLIL 133 (833)
Q Consensus 54 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 133 (833)
++|++|+|++|+|+++.|..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444444444444444444444444444444444455555555555555555444444555555555666
Q ss_pred cCCcCC
Q 003296 134 SANNLD 139 (833)
Q Consensus 134 s~N~l~ 139 (833)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 665555
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=4.7e-14 Score=135.84 Aligned_cols=107 Identities=23% Similarity=0.229 Sum_probs=95.2
Q ss_pred CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296 10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89 (833)
Q Consensus 10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 89 (833)
-+.+++++|.++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++++..|..+++|++|+|++|+
T Consensus 14 ~~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SSEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4789999999999986 224889999999999999999999999999999999999998888888999999999999999
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCcc
Q 003296 90 FHGEIPKGIADYRNLTLIDLSANNLSGS 117 (833)
Q Consensus 90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 117 (833)
|+++.+..|..+++|++|+|++|.+...
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9987777799999999999999998743
No 398
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=2.1e-12 Score=142.15 Aligned_cols=314 Identities=12% Similarity=0.130 Sum_probs=178.4
Q ss_pred cccCCC-CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCc---CCCCCCcccCCCCCCCEEEccCCcCcccCCccccC
Q 003296 25 TFNGFA-GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNK---FNGFLPINLGKTKALEELVLSGNAFHGEIPKGIAD 100 (833)
Q Consensus 25 ~f~~l~-~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 100 (833)
+|.++. .|+.+.+..+ ++.|...+|.++.+|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++.+...+|.+
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 466653 4777777643 666667777777777777776653 55555667777777777766544 44455666777
Q ss_pred CCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecc
Q 003296 101 YRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLS 180 (833)
Q Consensus 101 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls 180 (833)
+.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++.+-...|.. ..|+.+.+..+-
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~------------------- 193 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV------------------- 193 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-------------------
T ss_pred hcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-------------------
Confidence 777777777644 44455666777777777777544 34333344432 334433332111
Q ss_pred cccccccCCccCCCCCCCCEEecccccCcccCCC---------------CCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296 181 YNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ---------------NMSPNLVRLRLGTNLLIGEIPSATFTSLEKL 245 (833)
Q Consensus 181 ~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~---------------~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L 245 (833)
.......|..+..++......+.....-.. .....+..+.+..+ ...+...+|.++.+|
T Consensus 194 ----~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--v~~i~~~aF~~c~~L 267 (394)
T 4gt6_A 194 ----TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG--VARIETHAFDSCAYL 267 (394)
T ss_dssp ----CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT--EEEECTTTTTTCSSC
T ss_pred ----cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc--ceEcccceeeecccc
Confidence 111112223333333333322221100000 00011222222221 123455678888888
Q ss_pred CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCC
Q 003296 246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWN 325 (833)
Q Consensus 246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 325 (833)
+.+.+.++. ..+...+|.++++|+.+.+. +.+.......|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+
T Consensus 268 ~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 268 ASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp CEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred cEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 888886554 33566778888888888885 4455455567788888888888653 66566677888888888888654
Q ss_pred cCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcC
Q 003296 326 SLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL 375 (833)
Q Consensus 326 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 375 (833)
++.+-..+|.++++|+.+++.+|.... ..|....+|+.+.+..|.+
T Consensus 345 -v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 345 -VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred -cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 665666788888888888888776432 4566777788877766644
No 399
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=8.4e-16 Score=151.91 Aligned_cols=165 Identities=22% Similarity=0.302 Sum_probs=112.5
Q ss_pred cCCCCCCCEEECCCCCCCCCCCc------cccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhc
Q 003296 239 FTSLEKLTYLELDNNSFTGMIPQ------QLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFS 312 (833)
Q Consensus 239 f~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 312 (833)
|.....++.++++.|.+++..|. .+..+++|++|+|++|.+.+ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455666777777777776665 77788888888888888876 55 6777788888888888887 4566666
Q ss_pred CCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccC-ccccCCCCCCEEEccCCcCCccCCCCcccccceee
Q 003296 313 QLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIP-NSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALN 391 (833)
Q Consensus 313 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~ 391 (833)
.+++|++|++++|.+++ +| .+..+++|+.|+|++|++++..+ ..+..+++|++|++++|++.+.+|..
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~--------- 159 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN--------- 159 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT---------
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc---------
Confidence 77788888888888875 34 57777888888888888875433 46777888888888888776543321
Q ss_pred ccccccccchhhhhccCCCCCEEecccCcCc
Q 003296 392 LSSNLFEGPIPTTFARLNGLEVLDLSNNRFS 422 (833)
Q Consensus 392 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 422 (833)
+.........+..+++|+.|| +|.++
T Consensus 160 ---~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 160 ---NATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ---TTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ---cchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 111111223456667777665 45554
No 400
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=3.1e-15 Score=147.83 Aligned_cols=156 Identities=20% Similarity=0.292 Sum_probs=98.2
Q ss_pred ccCCCCCcEEEccCCccCCCChh------hhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccc
Q 003296 263 LGSCRSLTLLNLAQNELNGSLPI------QLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLS 336 (833)
Q Consensus 263 ~~~l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 336 (833)
+.....++.++++.+.+.+..|. .+..+++|+.|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44456666667777777666554 55666666666666666654 34 5555666666666666665 3455555
Q ss_pred cCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchh-hhhccCCCCCEEe
Q 003296 337 NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIP-TTFARLNGLEVLD 415 (833)
Q Consensus 337 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ 415 (833)
.+++|+.|+|++|++++ +| .+..+++|+.|++++|+++ +..+ ..+..+++|+.|+
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~----------------------~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT----------------------NWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC----------------------CHHHHHHHTTTTTCSEEE
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC----------------------chhHHHHHhcCCCCCEEE
Confidence 55566666666666654 22 4555555555555555543 3222 4677888999999
Q ss_pred cccCcCccccch----------hccCCCCCCeeeCcCCcccc
Q 003296 416 LSNNRFSGEIPQ----------LLAQMPTLTQLLLTNNQLSG 447 (833)
Q Consensus 416 Ls~N~l~~~~p~----------~~~~l~~L~~L~ls~N~l~~ 447 (833)
+++|.+++.+|. .+..+++|+.|| +|.++.
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999877665 377888898887 566543
No 401
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=1.7e-13 Score=148.19 Aligned_cols=104 Identities=25% Similarity=0.197 Sum_probs=75.5
Q ss_pred CEEECCCC-CCCCcccccCCCCCCEEECCC-CCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296 11 KLLNFSKN-ELVSLPTFNGFAGLEVLDFSS-NNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN 88 (833)
Q Consensus 11 ~~L~ls~N-~l~~i~~f~~l~~L~~L~Ls~-N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 88 (833)
+.++++++ .|+.||.+..+++|+.|+|++ |+|+++.+..|.+|++|++|+|++|+|++++|..|.++++|++|+|++|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 34677777 777777666677777777775 7777777777777777777777777777777777777777777777777
Q ss_pred cCcccCCccccCCCCCCEEeccCCcCC
Q 003296 89 AFHGEIPKGIADYRNLTLIDLSANNLS 115 (833)
Q Consensus 89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 115 (833)
+|+++.+..|..+. |+.|+|++|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77766665665555 777777777665
No 402
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=3.2e-11 Score=132.65 Aligned_cols=311 Identities=12% Similarity=0.152 Sum_probs=211.0
Q ss_pred CCCC-CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCC---CCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCC
Q 003296 4 CGGI-DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNN---LNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKT 77 (833)
Q Consensus 4 ~~~l-~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~---l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l 77 (833)
+.++ ..|+.+.+..+ ++.|. +|.++++|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++.+...+|..+
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 4555 45999999865 77784 69999999999998874 78888899999999999988765 666788899999
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccc
Q 003296 78 KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAA 157 (833)
Q Consensus 78 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l 157 (833)
.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++.+...+|.+ .+|+.+.+..+ ++......|..+..+.....
T Consensus 137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecc
Confidence 99999999855 45577889999999999999876 66677777865 67999998765 33455667777777766554
Q ss_pred ccccccccCChhhh----------------hcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCc
Q 003296 158 NQNKFSGSVPGGIT----------------RFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLV 221 (833)
Q Consensus 158 ~~n~l~~~~p~~~~----------------~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~ 221 (833)
..+.... +...+. ..+..+.+. +.+..+-...|..+.+|+.+.+.
T Consensus 213 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp----------------- 273 (394)
T 4gt6_A 213 DSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMP----------------- 273 (394)
T ss_dssp CCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECC-----------------
T ss_pred ccccccc-ccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecc-----------------
Confidence 4333221 000000 001112211 11222223344444555555443
Q ss_pred EEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCC
Q 003296 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301 (833)
Q Consensus 222 ~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 301 (833)
.+. ..+...+|.++++|+.+.+. +.++.+...+|.+|.+|+.++|..+ ++.+-..+|.++.+|+.+.+..+
T Consensus 274 -----~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 274 -----DSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp -----TTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred -----ccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 332 13556778888889988886 5567677778888999999988764 55455677888889999888654
Q ss_pred cCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccc
Q 003296 302 KLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLN 352 (833)
Q Consensus 302 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 352 (833)
++.+-..+|.++.+|+.+++.++.... ..|....+|+.+.+..|.+.
T Consensus 345 -v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 345 -VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp -CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred -cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 666677889999999999998876542 35667788888888776653
No 403
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=2.1e-12 Score=139.57 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=90.9
Q ss_pred CEEECCCC-CCCCcccccccCCCCCCEEeCcC-CcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296 33 EVLDFSSN-NLNGNINLQFDELVSLKSLNLSK-NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS 110 (833)
Q Consensus 33 ~~L~Ls~N-~l~~~~~~~f~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 110 (833)
..++++++ +|+.+.+ |..+++|++|+|++ |+|+++++..|.++++|++|+|++|+|+++.|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 8887544 88999999999996 99998888889999999999999999999888899999999999999
Q ss_pred CCcCCccCCccccCCCCCcEEECcCCcCCC
Q 003296 111 ANNLSGSVPDRIGELSKLEVLILSANNLDG 140 (833)
Q Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 140 (833)
+|+|+++.+..|..++ |+.|+|++|.|..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999987777777776 9999999998875
No 404
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=1.8e-13 Score=148.49 Aligned_cols=133 Identities=17% Similarity=0.242 Sum_probs=84.4
Q ss_pred CCCCEEECCCCCCCCcc--c----cc-CCCCCCEEECCCCCCCCccccc-ccCCCCCCEEeCcCCcCCCCCCccc-----
Q 003296 8 DGLKLLNFSKNELVSLP--T----FN-GFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKFNGFLPINL----- 74 (833)
Q Consensus 8 ~~L~~L~ls~N~l~~i~--~----f~-~l~~L~~L~Ls~N~l~~~~~~~-f~~l~~L~~L~Ls~N~l~~~~p~~~----- 74 (833)
+.|+.|+|++|.|+... . +. ..++|+.|||++|.|+...... +..+++|++|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56778888888877532 1 12 2357888888888776432222 2345677888888887764333333
Q ss_pred CCCCCCCEEEccCCcCccc----CCccccCCCCCCEEeccCCcCCcc----CCccccCCCCCcEEECcCCcCCC
Q 003296 75 GKTKALEELVLSGNAFHGE----IPKGIADYRNLTLIDLSANNLSGS----VPDRIGELSKLEVLILSANNLDG 140 (833)
Q Consensus 75 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 140 (833)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|+.. ++..+...++|++|+|++|.|+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 3456778888888877542 334446677777888887777642 24455666777777777777764
No 405
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=5.5e-13 Score=144.77 Aligned_cols=170 Identities=24% Similarity=0.239 Sum_probs=91.8
Q ss_pred CCCCCEEECCCCCCCCCCCccccC-----CCCCcEEEccCCccCCCChhhh-CCCCCCcEEEccCCcCCCcCchhh----
Q 003296 242 LEKLTYLELDNNSFTGMIPQQLGS-----CRSLTLLNLAQNELNGSLPIQL-GSLGILQVMNLQLNKLSGEIPSQF---- 311 (833)
Q Consensus 242 l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~---- 311 (833)
+++|+.|+|++|.++......+.. .++|+.|+|++|.+.......+ ..+.+|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356778888888876543333322 2577777777777653222222 234456677777776664433333
Q ss_pred -cCCCcCceeeccCCcCccc----CccccccCCCCCEEEccCCccccc----cCccccCCCCCCEEEccCCcCCccCCCC
Q 003296 312 -SQLKLLSTMNISWNSLSGS----IPSFLSNLTNLVNLNLRQNNLNGS----IPNSITNMRSLIELQLGGNQLSGTIPMM 382 (833)
Q Consensus 312 -~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 382 (833)
...++|++|+|++|.++.. ++..+...++|++|+|++|.|+.. ++..+...++|++|+|++|.|+..-.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH--
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH--
Confidence 2345566666666666532 233344556666666666666532 23444555566666666665542100
Q ss_pred cccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhc
Q 003296 383 PPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLL 429 (833)
Q Consensus 383 ~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 429 (833)
..++..+...++|++|||++|.|+..-...+
T Consensus 229 ----------------~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 229 ----------------LALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp ----------------HHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred ----------------HHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 0123344455666666666666654443333
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.21 E-value=7.6e-10 Score=120.99 Aligned_cols=127 Identities=6% Similarity=0.013 Sum_probs=77.7
Q ss_pred ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCC
Q 003296 24 PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRN 103 (833)
Q Consensus 24 ~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 103 (833)
|.|....+|+.+.+.. .++.|...+|.++.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|... +
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 3455566777777764 466677777888888888888643 666667777776 5777777644 554555666654 6
Q ss_pred CCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccc
Q 003296 104 LTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAAN 158 (833)
Q Consensus 104 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~ 158 (833)
|+.+++..+ +..+....|.+. +|+.+.+..+ ++.+....|.....++.....
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~ 166 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVS 166 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEEC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccc
Confidence 777777655 343455556554 4555554432 444445555555555554443
No 407
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.20 E-value=2.3e-11 Score=125.77 Aligned_cols=144 Identities=16% Similarity=0.049 Sum_probs=110.7
Q ss_pred HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEE
Q 003296 554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYL 632 (833)
Q Consensus 554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~l 632 (833)
-..|......+.|+.+.||++... |+.+++|+..... ......+.+|+++++.+. |..+.++++++...+..|+
T Consensus 13 l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~----~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~l 87 (263)
T 3tm0_A 13 IEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRY----KGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL 87 (263)
T ss_dssp HTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGG----TTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred hccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCccc----CCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEE
Confidence 345766778888899999999864 7899999984211 122356999999999985 6778889999998889999
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----------------------------------
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT----------------------------------- 677 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~----------------------------------- 677 (833)
||||++|.+|.+.+.. ......++.+++++++.||...
T Consensus 88 v~e~i~G~~l~~~~~~-------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (263)
T 3tm0_A 88 LMSEADGVLCSEEYED-------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE 160 (263)
T ss_dssp EEECCSSEEHHHHCCT-------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGST
T ss_pred EEEecCCeehhhccCC-------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999876421 1123467889999999999610
Q ss_pred ---------------------CCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 678 ---------------------SNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 678 ---------------------~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
...++|+|++|.||+++++..+.|.||+.+..
T Consensus 161 ~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp TCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred cccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 14589999999999998765667999986643
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=2.6e-09 Score=116.74 Aligned_cols=310 Identities=13% Similarity=0.122 Sum_probs=186.8
Q ss_pred CCCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296 7 IDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV 84 (833)
Q Consensus 7 l~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 84 (833)
.++|+.+.+.. .++.|+ +|.++.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|... +|+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE 119 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence 45677777764 466674 6999999999999754 888899999998 6888888654 666777888775 799999
Q ss_pred ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296 85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164 (833)
Q Consensus 85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~ 164 (833)
+..+ ++.+....|.+. +|+.+.+..+ ++.+....|.+..+++...+..+.........+. ....... ..
T Consensus 120 lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~ 188 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNKTI-------LE 188 (379)
T ss_dssp CCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTSSE-------EE
T ss_pred CCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-cccccce-------ec
Confidence 9876 444556667665 6777776654 6667788899999999998876654321111000 0000000 00
Q ss_pred cCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCC
Q 003296 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK 244 (833)
Q Consensus 165 ~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~ 244 (833)
..+. ...+..+.+... ........+....+|+.+.+..+- ..+....|.++.+
T Consensus 189 ~~~~--~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~~------------------------~~i~~~~f~~~~~ 241 (379)
T 4h09_A 189 SYPA--AKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSGV------------------------TTLGDGAFYGMKA 241 (379)
T ss_dssp ECCT--TCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTTC------------------------CEECTTTTTTCSS
T ss_pred cccc--cccccccccccc-eeEEeecccccccccceeeeccce------------------------eEEccccccCCcc
Confidence 0000 011222222211 111223334444555555543321 1234455666666
Q ss_pred CCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccC
Q 003296 245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISW 324 (833)
Q Consensus 245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 324 (833)
|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++.+....|.++.+|+.+.|..
T Consensus 242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 666666554 55555566666667776666543 3334445566667777777766666666666777777777777754
Q ss_pred CcCcccCccccccCCCCCEEEccCCccccccCccccCCC
Q 003296 325 NSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMR 363 (833)
Q Consensus 325 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 363 (833)
+ ++.+-..+|.++++|+.+.+..+ ++.+-..+|.++.
T Consensus 320 ~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 320 A-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp T-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred c-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 3 55455566777777777777544 5545555666554
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.14 E-value=9.4e-11 Score=120.97 Aligned_cols=132 Identities=15% Similarity=0.108 Sum_probs=99.0
Q ss_pred cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc--ccceEEEecCCceEEEEeeCC
Q 003296 561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV--MTPLAYVLASDSAYLFYEYAP 638 (833)
Q Consensus 561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni--v~~~~~~~~~~~~~lv~ey~~ 638 (833)
.+.+.|..+.||++...+|..+++|..... ....+.+|+++++.+++.++ .++++++..++..++||||++
T Consensus 26 ~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-------~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~ 98 (264)
T 1nd4_A 26 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSG-------ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVP 98 (264)
T ss_dssp ECSCTTSSCEEEEEECTTSCCEEEEEECSC-------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCS
T ss_pred ecccCCCCceEEEEecCCCCeEEEEeCCcc-------cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecC
Confidence 333466679999998878889999997321 22568899999999965554 458888888888999999999
Q ss_pred CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----------------------------------------
Q 003296 639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT----------------------------------------- 677 (833)
Q Consensus 639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~----------------------------------------- 677 (833)
|.++. ... .+ ...++.++++.++.||...
T Consensus 99 G~~l~--~~~-----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (264)
T 1nd4_A 99 GQDLL--SSH-----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPA 168 (264)
T ss_dssp SEETT--TSC-----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHH
T ss_pred CcccC--cCc-----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHH
Confidence 98884 221 12 2356778888888888532
Q ss_pred --------------CCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 678 --------------SNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 678 --------------~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
...++|+|++|.||+++.++.+++.|||.+..
T Consensus 169 ~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 169 ELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 11299999999999998776677999987654
No 410
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=99.00 E-value=1.1e-09 Score=118.73 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=107.2
Q ss_pred ccccccCcccEEEEEEcCCCceEEEEEccc-cchhhhccChhHHHHHHHHHhcCC--CCCcccceEEEecC---CceEEE
Q 003296 560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNW-SDKIFQLGSHHKFDKELEVLGKLS--NSNVMTPLAYVLAS---DSAYLF 633 (833)
Q Consensus 560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~-~~~~~~~~~~~~~~~E~~~l~~l~--H~niv~~~~~~~~~---~~~~lv 633 (833)
.+.++.|.++.||+....+ ..+++|+... .... ......+.+|+++++.++ +..+.++++++.+. +..|+|
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~--~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~v 119 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKL--LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYI 119 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCC--CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEE
Confidence 4568899999999998754 6788888730 1111 112357889999999997 45578888888776 458999
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC------------------------------------
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT------------------------------------ 677 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~------------------------------------ 677 (833)
|||++|..+.+.. ...++..++..++.++++.|+.||...
T Consensus 120 me~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (359)
T 3dxp_A 120 MEFVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIP 195 (359)
T ss_dssp EECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCH
T ss_pred EEecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCCh
Confidence 9999998875422 124778888999999999999999621
Q ss_pred -------------------CCCeeecCCCccceeeCCCCC--ceeccceeeeee
Q 003296 678 -------------------SNPILLLDLSTRNIFLKSLKE--PQIGDIELCKVI 710 (833)
Q Consensus 678 -------------------~~~iiHrdlk~~Nill~~~~~--~ki~dfgl~~~~ 710 (833)
...++|+|++|.||+++.++. +.|.||+.+...
T Consensus 196 ~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g 249 (359)
T 3dxp_A 196 AMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG 249 (359)
T ss_dssp HHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred HHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence 256999999999999987653 589999988764
No 411
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.86 E-value=9.4e-10 Score=116.21 Aligned_cols=188 Identities=15% Similarity=0.118 Sum_probs=122.3
Q ss_pred ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCc--ccceEEEecCC---ceEEE
Q 003296 560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNV--MTPLAYVLASD---SAYLF 633 (833)
Q Consensus 560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~ni--v~~~~~~~~~~---~~~lv 633 (833)
.+.++.|....||+.. ..+++|+-. .. .....+.+|+++|+.+. +..+ .+.+++....+ ..|+|
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~-~~-----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~v 94 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPK-HS-----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAG 94 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEES-SH-----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecC-Cc-----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEE
Confidence 3568899999999873 578999863 21 12357899999999884 3333 33444433332 35899
Q ss_pred EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcC-------------------------------------
Q 003296 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF------------------------------------- 676 (833)
Q Consensus 634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~------------------------------------- 676 (833)
|||++|.++.+.... .++..++..++.++++.++.||..
T Consensus 95 m~~i~G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
T 3sg8_A 95 FTKIKGVPLTPLLLN----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQM 170 (304)
T ss_dssp EECCCCEECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred EcccCCeECCccccc----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccH
Confidence 999999888754321 367777788888888888888851
Q ss_pred ------------------CCCCeeecCCCccceeeCC--CCCceeccceeeeeeCCCCCCCcccc------------ccc
Q 003296 677 ------------------TSNPILLLDLSTRNIFLKS--LKEPQIGDIELCKVIDPSKSTGSLST------------VAG 724 (833)
Q Consensus 677 ------------------~~~~iiHrdlk~~Nill~~--~~~~ki~dfgl~~~~~~~~~~~~~~~------------~~g 724 (833)
....++|+|++|.||++++ ...+.+.||+.+....+...-..... +..
T Consensus 171 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~ 250 (304)
T 3sg8_A 171 KKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILN 250 (304)
T ss_dssp HHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHH
Confidence 1135899999999999997 45678999999876543210000000 000
Q ss_pred cccccc-cccccCCcccccCcchhhHHHHHHHHhCCCccc
Q 003296 725 SVGYIP-PEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN 763 (833)
Q Consensus 725 t~~y~a-PE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~ 763 (833)
..++.. |+... +.....+.|++|+++|++.+|+.+|.
T Consensus 251 ~Y~~~~~~~~~~--r~~~~~~~~~l~~~~~~~~~g~~~~~ 288 (304)
T 3sg8_A 251 HYKHKDIPTVLE--KYRMKEKYWSFEKIIYGKEYGYMDWY 288 (304)
T ss_dssp HHTCSCHHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCCCcHHHHH--HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 011112 22211 11223578999999999999998874
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=2.3e-09 Score=115.18 Aligned_cols=176 Identities=14% Similarity=0.175 Sum_probs=101.7
Q ss_pred ccCCCCCCEEECCCCCCC---------CcccccccCCCCCCEEeCcCCc-CCCCCCcccCCCCCCCEEEccCCcCcccCC
Q 003296 26 FNGFAGLEVLDFSSNNLN---------GNINLQFDELVSLKSLNLSKNK-FNGFLPINLGKTKALEELVLSGNAFHGEIP 95 (833)
Q Consensus 26 f~~l~~L~~L~Ls~N~l~---------~~~~~~f~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 95 (833)
...+++|+.|.+..+... +.....+..+++|+.|+|++|. ++ +.+ + .+++|+.|+|..|.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~--~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK--K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS--C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc--c-cCCCCcEEEEecCCCChHHH
Confidence 345667777777655331 1122345667788888887773 32 222 3 26778888888777654333
Q ss_pred cccc--CCCCCCEEeccC--CcCCcc-----CCccc--cCCCCCcEEECcCCcCCCCCCcccc---cCCccCcccccccc
Q 003296 96 KGIA--DYRNLTLIDLSA--NNLSGS-----VPDRI--GELSKLEVLILSANNLDGRLPTSLA---SITTLSRFAANQNK 161 (833)
Q Consensus 96 ~~~~--~l~~L~~L~Ls~--N~l~~~-----~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~l~l~~n~ 161 (833)
..+. .+++|+.|+|+. |...+. +...+ ..+++|++|+|++|.++...+..+. .+++|+.|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 3333 677888888753 221111 11122 2467888888888877643333332 46778888888888
Q ss_pred cccc----CChh--hhhcCCEEecccccccccCCccCCC-CCCCCEEeccccc
Q 003296 162 FSGS----VPGG--ITRFLRNLDLSYNKLLGVIPIDLLS-HPNLQTIDLSVNM 207 (833)
Q Consensus 162 l~~~----~p~~--~~~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~~L~Ls~N~ 207 (833)
+.+. ++.. ..++|+.|+|++|.+....-..+.. + ...++++.+.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7653 2222 2456888888888775432222221 1 3457888776
No 413
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=1.5e-08 Score=108.80 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=68.3
Q ss_pred CCCCCEEECCCCCCCC-c-------ccccccCCCCCCEEeCcCCcCCC---------CCCcccCCCCCCCEEEccCCcCc
Q 003296 29 FAGLEVLDFSSNNLNG-N-------INLQFDELVSLKSLNLSKNKFNG---------FLPINLGKTKALEELVLSGNAFH 91 (833)
Q Consensus 29 l~~L~~L~Ls~N~l~~-~-------~~~~f~~l~~L~~L~Ls~N~l~~---------~~p~~~~~l~~L~~L~L~~N~l~ 91 (833)
++.++.|.+......+ . ...+...+++|+.|.+..+.... .++..+..+++|++|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3457788887665442 1 12235567899999997764321 12334567789999999988411
Q ss_pred ccCCccccCCCCCCEEeccCCcCCccCCcccc--CCCCCcEEECcC
Q 003296 92 GEIPKGIADYRNLTLIDLSANNLSGSVPDRIG--ELSKLEVLILSA 135 (833)
Q Consensus 92 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~ 135 (833)
..+. +. +++|+.|+|..|.+.......+. .+++|++|+|+.
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 2222 43 88999999999887643333443 789999999864
No 414
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.53 E-value=6.3e-09 Score=105.88 Aligned_cols=62 Identities=29% Similarity=0.392 Sum_probs=25.2
Q ss_pred CCCCCEEEccCCcCcc--cCCccccCCCCCCEEeccCCcCCccCCccccCCC--CCcEEECcCCcCCC
Q 003296 77 TKALEELVLSGNAFHG--EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELS--KLEVLILSANNLDG 140 (833)
Q Consensus 77 l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~ 140 (833)
+++|++|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 3344444444444443 1223333444444444444444432 1122222 44455555554444
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.51 E-value=3e-07 Score=97.54 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=99.7
Q ss_pred cCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC---CC-cccceEEEecCCceEE
Q 003296 557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN---SN-VMTPLAYVLASDSAYL 632 (833)
Q Consensus 557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H---~n-iv~~~~~~~~~~~~~l 632 (833)
....+.++.|....||+. |..+++|+.. ... ....+.+|.++++.+.+ +- +.+++++ +..++
T Consensus 39 i~~v~~l~~G~~n~vy~v----g~~~vlR~~~-~~~-----~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~l 104 (320)
T 3r70_A 39 INELRYLSSGDDSDTFLC----NEQYVVKVPK-RDS-----VRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFN 104 (320)
T ss_dssp CSCEEEEEECSSEEEEEE----TTTEEEEEES-SHH-----HHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCE
T ss_pred eEEEEeCCCCCCceEEEE----CCEEEEEeCC-cHH-----HHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEE
Confidence 345677899999999998 7789999873 211 12458999999998876 22 2333443 56789
Q ss_pred EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----------------------------------
Q 003296 633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT----------------------------------- 677 (833)
Q Consensus 633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~----------------------------------- 677 (833)
||||++|.++.+... ..++..++..++.++++.++.||...
T Consensus 105 vme~i~G~~l~~~~~----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (320)
T 3r70_A 105 IMKYIKGERITYEQY----HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQL 180 (320)
T ss_dssp EEECCCCBCCCHHHH----TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeecCCcccccccc----ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccc
Confidence 999999988874332 13566667777888888888887422
Q ss_pred -------------------------CCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 678 -------------------------SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 678 -------------------------~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
...++|+|++|.||+++.+..+.+.||+.+....
T Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~~ 239 (320)
T 3r70_A 181 LTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGD 239 (320)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEEC
T ss_pred ccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccCC
Confidence 1235999999999999986667999999887654
No 416
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.49 E-value=3.5e-07 Score=95.09 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=59.8
Q ss_pred ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC---CcccceEEEecCCceEEEEee
Q 003296 560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS---NVMTPLAYVLASDSAYLFYEY 636 (833)
Q Consensus 560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~---niv~~~~~~~~~~~~~lv~ey 636 (833)
.+.++.|.++.||++...+|..++||+.... .......|.+|++.|+.++|. .+.+++++. ..++||||
T Consensus 20 ~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~----~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~ 91 (288)
T 3d1u_A 20 VAERGHSHRWHLYRVELADGTPLFVKALPDD----APALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW 91 (288)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEECCTT----CCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred eeeeCCcchhheEEEEeCCCCeEEEEecCCC----CcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEe
Confidence 4678999999999999889999999997311 122346799999999999875 467777763 47999999
Q ss_pred CCCCCh
Q 003296 637 APKGTL 642 (833)
Q Consensus 637 ~~~g~L 642 (833)
++++++
T Consensus 92 l~g~~~ 97 (288)
T 3d1u_A 92 VDERPP 97 (288)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 999875
No 417
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.49 E-value=1.3e-08 Score=103.48 Aligned_cols=96 Identities=25% Similarity=0.292 Sum_probs=54.8
Q ss_pred EECCCCCCC---CcccccccCCCCCCEEeCcCCcCCCCC--CcccCCCCCCCEEEccCCcCcccCCccccCCC--CCCEE
Q 003296 35 LDFSSNNLN---GNINLQFDELVSLKSLNLSKNKFNGFL--PINLGKTKALEELVLSGNAFHGEIPKGIADYR--NLTLI 107 (833)
Q Consensus 35 L~Ls~N~l~---~~~~~~f~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L 107 (833)
++++.|+.. +..+....++++|+.|+|++|+|+++. |..+..+++|+.|+|++|+|++. ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 555666332 222223345666667777777666532 34455666677777777766654 2233333 67777
Q ss_pred eccCCcCCccCC-------ccccCCCCCcEEE
Q 003296 108 DLSANNLSGSVP-------DRIGELSKLEVLI 132 (833)
Q Consensus 108 ~Ls~N~l~~~~~-------~~~~~l~~L~~L~ 132 (833)
+|++|.+.+..| ..+..+++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 777777765444 2356677777775
No 418
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=2.7e-08 Score=96.31 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=63.3
Q ss_pred ccCCCCCCEEECCCC-CCCCc----ccccccCCCCCCEEeCcCCcCCCC----CCcccCCCCCCCEEEccCCcCccc---
Q 003296 26 FNGFAGLEVLDFSSN-NLNGN----INLQFDELVSLKSLNLSKNKFNGF----LPINLGKTKALEELVLSGNAFHGE--- 93 (833)
Q Consensus 26 f~~l~~L~~L~Ls~N-~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--- 93 (833)
+...+.|++|+|++| .|... ....+...++|++|+|++|.|... +...+...+.|++|+|++|.|...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455666777777777 66531 223345566677777777766531 122334445666666666666532
Q ss_pred -CCccccCCCCCCEEec--cCCcCCcc----CCccccCCCCCcEEECcCCcCC
Q 003296 94 -IPKGIADYRNLTLIDL--SANNLSGS----VPDRIGELSKLEVLILSANNLD 139 (833)
Q Consensus 94 -~p~~~~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 139 (833)
+...+...+.|+.|+| ++|.|... +...+...++|++|+|++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344555566666666 56666532 2233344456666666666553
No 419
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=5.9e-08 Score=93.91 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=88.3
Q ss_pred CCCCCCCEEECCCC-CCCC--c----ccccCCCCCCEEECCCCCCCCc----ccccccCCCCCCEEeCcCCcCCCC----
Q 003296 5 GGIDGLKLLNFSKN-ELVS--L----PTFNGFAGLEVLDFSSNNLNGN----INLQFDELVSLKSLNLSKNKFNGF---- 69 (833)
Q Consensus 5 ~~l~~L~~L~ls~N-~l~~--i----~~f~~l~~L~~L~Ls~N~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~~---- 69 (833)
...+.|+.|+|++| .|.. + ..+...++|++|||++|+|... +...+...++|++|+|++|.|+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45788999999999 9875 2 2466788999999999999742 233456678999999999999853
Q ss_pred CCcccCCCCCCCEEEc--cCCcCccc----CCccccCCCCCCEEeccCCcCC
Q 003296 70 LPINLGKTKALEELVL--SGNAFHGE----IPKGIADYRNLTLIDLSANNLS 115 (833)
Q Consensus 70 ~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 115 (833)
+...+...+.|++|+| ++|.|... +...+...+.|+.|+|++|.|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456777889999999 88999753 3345666789999999999885
No 420
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.33 E-value=2.8e-06 Score=89.36 Aligned_cols=137 Identities=13% Similarity=0.068 Sum_probs=92.6
Q ss_pred ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC---CcccceEEEe-cCCceEEEEe
Q 003296 560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS---NVMTPLAYVL-ASDSAYLFYE 635 (833)
Q Consensus 560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~---niv~~~~~~~-~~~~~~lv~e 635 (833)
.+.++.|....||+. |..++||+-. .. .....+.+|+++|+.+.+. .|.+.+.++. ..+..++|||
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~-~~-----~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e 93 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK-SQ-----QGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYR 93 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES-SH-----HHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEE
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC-Cc-----hHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEe
Confidence 345778888899998 6788999852 11 1235789999999999753 2455566664 4556889999
Q ss_pred eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcC---------------------------------------
Q 003296 636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF--------------------------------------- 676 (833)
Q Consensus 636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~--------------------------------------- 676 (833)
|++|..+.+..-. .++..++..++.++++.|+.||..
T Consensus 94 ~i~G~~l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~ 169 (306)
T 3tdw_A 94 KVQGQILGEDGMA----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLR 169 (306)
T ss_dssp CCCSEECHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred ccCCeECchhhhh----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhH
Confidence 9999888663211 133444444445555554444421
Q ss_pred ------------------CCCCeeecCCCccceeeCC---CCC-ceeccceeeeee
Q 003296 677 ------------------TSNPILLLDLSTRNIFLKS---LKE-PQIGDIELCKVI 710 (833)
Q Consensus 677 ------------------~~~~iiHrdlk~~Nill~~---~~~-~ki~dfgl~~~~ 710 (833)
....++|+|++|.||+++. ++. +.|.||+.+...
T Consensus 170 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g 225 (306)
T 3tdw_A 170 DYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS 225 (306)
T ss_dssp HHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred HHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence 1345799999999999987 355 479999987654
No 421
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.26 E-value=2.4e-06 Score=88.17 Aligned_cols=134 Identities=20% Similarity=0.162 Sum_probs=93.2
Q ss_pred cccCccc-EEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEEeeCCC
Q 003296 563 ELKTRFS-TYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFYEYAPK 639 (833)
Q Consensus 563 ig~g~~g-~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~ey~~~ 639 (833)
+..|..| .||+.... ++..+++|+-. .. ....+.+|.++|+.+. +--|-++++++.+.+..++|||+++|
T Consensus 32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~-~~------~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G 104 (272)
T 4gkh_A 32 DNVGQSGATIYRLYGKPNAPELFLKHGK-GS------VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPG 104 (272)
T ss_dssp EECSSSSCEEEEEECCTTCCCEEEEEEE-TH------HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcCCeEEEEEecCCCeEEEEEECC-CC------CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCC
Confidence 3445554 69998764 56789999863 21 2356889999998885 32356678899888999999999999
Q ss_pred CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcC-------------------------------------------
Q 003296 640 GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF------------------------------------------- 676 (833)
Q Consensus 640 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~------------------------------------------- 676 (833)
.++.+..... ...+..++.+++..|+-||..
T Consensus 105 ~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (272)
T 4gkh_A 105 KTAFQVLEEY------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQ 178 (272)
T ss_dssp EEHHHHHHHC------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHH
T ss_pred ccccccccCC------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHH
Confidence 8877654321 112234455566666666632
Q ss_pred ------------CCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 677 ------------TSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 677 ------------~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
....++|+|+.+.||+++.++.+-|.||+.+..
T Consensus 179 ~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 179 VWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 012379999999999999877677889887654
No 422
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.11 E-value=6.2e-06 Score=88.86 Aligned_cols=83 Identities=8% Similarity=-0.026 Sum_probs=56.1
Q ss_pred ccc-ccCcccEEEEEEcC-------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-C--CCcccceEEEecC--
Q 003296 561 NVE-LKTRFSTYYKAVMP-------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-N--SNVMTPLAYVLAS-- 627 (833)
Q Consensus 561 ~~i-g~g~~g~vy~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H--~niv~~~~~~~~~-- 627 (833)
+.+ +.|....+|+.... +|..+++|+-. ............+.+|+++++.+. + -.+.++++++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~-~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAP-AAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECC-CGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCC-CCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 456 78888999998764 26788998863 211000111256889999998885 3 2466677877655
Q ss_pred -CceEEEEeeCCCCChhh
Q 003296 628 -DSAYLFYEYAPKGTLFD 644 (833)
Q Consensus 628 -~~~~lv~ey~~~g~L~~ 644 (833)
+..++||||++|..+.+
T Consensus 105 ~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp TSSCEEEEECCCCBCCCB
T ss_pred cCCceEEEEecCCCChhh
Confidence 35789999999877654
No 423
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.07 E-value=7.7e-06 Score=88.05 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=90.1
Q ss_pred ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC--cccceEEEecC-CceEEEEee
Q 003296 560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN--VMTPLAYVLAS-DSAYLFYEY 636 (833)
Q Consensus 560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~~~~~~~~~-~~~~lv~ey 636 (833)
.+.++.|....+|+... +|..+++|.-. . ...+.+|+++++.+.... +.++++++... +..|+||||
T Consensus 46 i~~l~gG~~n~~y~v~~-~g~~~vlK~~~-~--------~~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~ 115 (362)
T 3ovc_A 46 LMQLSEGEESRAFSFDV-GGRGYVLRVNS-C--------ADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRR 115 (362)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEES-C--------CHHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEEC
T ss_pred EEECCCCCcceEEEEEE-CCcEEEEEeCC-c--------hhhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEe
Confidence 35678899999999875 68889999873 1 135889999999886543 45567776654 668999999
Q ss_pred CCCCChhhh------------------hhcCCCC---------------CCCHHHHH---------------------HH
Q 003296 637 APKGTLFDV------------------LHGCLEN---------------ALDWASRY---------------------SI 662 (833)
Q Consensus 637 ~~~g~L~~~------------------l~~~~~~---------------~l~~~~~~---------------------~i 662 (833)
++|.++.+. ||..... .-.|.... ..
T Consensus 116 l~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~ 195 (362)
T 3ovc_A 116 AQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASV 195 (362)
T ss_dssp CCSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHH
T ss_pred cCCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 998665421 1111000 00122110 11
Q ss_pred HHHHHHHHHhhhcC-CCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 663 AVGVAQGLAFLHGF-TSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 663 ~~~i~~~l~ylH~~-~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
...+..-..++... ..+.++|+|+.+.||+++..+.+.|.||+.+....
T Consensus 196 ~~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~gd 245 (362)
T 3ovc_A 196 AQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFGD 245 (362)
T ss_dssp HHHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEEC
T ss_pred hHHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccCC
Confidence 11111122233211 12568999999999999877778899999887654
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.91 E-value=4e-05 Score=83.77 Aligned_cols=79 Identities=9% Similarity=-0.057 Sum_probs=51.2
Q ss_pred ccccccCcccEEEEEEcC-CCceEEEEEccccch-hhh--ccChhHHHHHHHHHhcCCC--CCcc-cceEEEecCCceEE
Q 003296 560 LNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDK-IFQ--LGSHHKFDKELEVLGKLSN--SNVM-TPLAYVLASDSAYL 632 (833)
Q Consensus 560 ~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~-~~~--~~~~~~~~~E~~~l~~l~H--~niv-~~~~~~~~~~~~~l 632 (833)
.+.+|.|.++.||++... +++.|+||......+ ... ......+.+|.++++.+.. |..| +++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457899999999999864 578999998742211 011 1234567889999988743 4444 34433 4556789
Q ss_pred EEeeCCCC
Q 003296 633 FYEYAPKG 640 (833)
Q Consensus 633 v~ey~~~g 640 (833)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999864
No 425
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.76 E-value=5.6e-05 Score=80.75 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=80.1
Q ss_pred cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-----CCCcccce-E--EEecCCceEE
Q 003296 561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-----NSNVMTPL-A--YVLASDSAYL 632 (833)
Q Consensus 561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----H~niv~~~-~--~~~~~~~~~l 632 (833)
..++.|..+.||+...++| .+++|+... . ..+...|+++++.+. .|.++... | +....+..++
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~-~-------~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~ 108 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHR-P-------EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFV 108 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECS-C-------HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEE
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCC-C-------HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEE
Confidence 3455577899999987655 489999842 1 123444555555442 34444311 1 1234567899
Q ss_pred EEeeCCCCChh--------------hhhhcCC-----C-------CCCCHHHHH--------------------------
Q 003296 633 FYEYAPKGTLF--------------DVLHGCL-----E-------NALDWASRY-------------------------- 660 (833)
Q Consensus 633 v~ey~~~g~L~--------------~~l~~~~-----~-------~~l~~~~~~-------------------------- 660 (833)
||||++|..+. ..+|... . ..-.|....
T Consensus 109 l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (346)
T 2q83_A 109 VYDWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLY 188 (346)
T ss_dssp EEECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred EEEeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 99999986542 1122110 0 012343211
Q ss_pred -----HHHHHHHHHHHhhhc----------CCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 661 -----SIAVGVAQGLAFLHG----------FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 661 -----~i~~~i~~~l~ylH~----------~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
.+...+.+++++|+. .....++|+|+++.||+++.++.+.+.||+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 189 LQEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 011123345666652 0256799999999999998778899999997754
No 426
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.60 E-value=9.7e-05 Score=66.25 Aligned_cols=56 Identities=27% Similarity=0.312 Sum_probs=44.1
Q ss_pred CEEECCCCCCC--CcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCC
Q 003296 11 KLLNFSKNELV--SLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67 (833)
Q Consensus 11 ~~L~ls~N~l~--~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~ 67 (833)
..++++++.|+ .+|. .-.++|++|||++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889999998 7885 23346888888888888888888888888888888888764
No 427
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.59 E-value=0.00025 Score=74.11 Aligned_cols=136 Identities=17% Similarity=0.111 Sum_probs=91.3
Q ss_pred cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC---CCCcccceEEEecCCceEEEEeeC
Q 003296 561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS---NSNVMTPLAYVLASDSAYLFYEYA 637 (833)
Q Consensus 561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~~~~~~~~~~~~~lv~ey~ 637 (833)
+.++.|....+|+... ++..++||+-. .. ....|.+|.+.|+.+. ...+.++++++...+..++||||+
T Consensus 42 ~~l~gG~~n~~y~v~~-~~~~~vlK~~~-~~------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l 113 (312)
T 3jr1_A 42 EKLYSGEMNEIWLIND-EVQTVFVKINE-RS------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL 113 (312)
T ss_dssp EEECCSSSSEEEEEES-SSCEEEEEEEE-GG------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred EEeCCccceeeeEEEE-CCCeEEEEeCC-cc------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence 4678899999999986 56788899873 11 2467899999998884 356788888888888899999999
Q ss_pred CCCChhh-----------hhhcCCC-C-------------------CCCHHHHH---HHH--H--------------HHH
Q 003296 638 PKGTLFD-----------VLHGCLE-N-------------------ALDWASRY---SIA--V--------------GVA 667 (833)
Q Consensus 638 ~~g~L~~-----------~l~~~~~-~-------------------~l~~~~~~---~i~--~--------------~i~ 667 (833)
++..+.. .||.... . .-+|.... ++. . .++
T Consensus 114 ~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~ 193 (312)
T 3jr1_A 114 NKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIV 193 (312)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHH
T ss_pred cCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 9976521 2333211 0 12565432 111 1 111
Q ss_pred HHH-Hhhhc-CCCCCeeecCCCccceeeCCCCCceeccce
Q 003296 668 QGL-AFLHG-FTSNPILLLDLSTRNIFLKSLKEPQIGDIE 705 (833)
Q Consensus 668 ~~l-~ylH~-~~~~~iiHrdlk~~Nill~~~~~~ki~dfg 705 (833)
..+ ..|.. ...+.+||+|+.+.|++++.++ +.|.|+.
T Consensus 194 ~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 194 QIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 112 23421 2256799999999999999876 7788873
No 428
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=1.7e-05 Score=74.69 Aligned_cols=84 Identities=7% Similarity=0.096 Sum_probs=44.4
Q ss_pred CCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc-CcccCCccccCC----CCCCEEeccCCc-CCccCCccccCCCC
Q 003296 54 VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA-FHGEIPKGIADY----RNLTLIDLSANN-LSGSVPDRIGELSK 127 (833)
Q Consensus 54 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 127 (833)
.+|+.|||+++.|+..--..+.++++|++|+|++|. |+..--..++.+ ++|+.|+|++|. |+..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666554333345566666666666663 433222223333 246666666653 55322234555666
Q ss_pred CcEEECcCCc
Q 003296 128 LEVLILSANN 137 (833)
Q Consensus 128 L~~L~Ls~N~ 137 (833)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777666653
No 429
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.46 E-value=0.00073 Score=70.02 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=53.7
Q ss_pred ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC---CcccceEEEecCCceEEEEee
Q 003296 560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS---NVMTPLAYVLASDSAYLFYEY 636 (833)
Q Consensus 560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~---niv~~~~~~~~~~~~~lv~ey 636 (833)
.+.+|.|..+.||+.+..+|+.|+||+-... .......|.+|++.|+.+.-. -+.+++++ +.-++||||
T Consensus 20 v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~----~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e~ 91 (288)
T 3f7w_A 20 VAERGHSHRWHLYRVELADGTPLFVKALPDD----APALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAMEW 91 (288)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEECCTT----CCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEEC
T ss_pred EEecCCCCCeEEEEEEECCCCEEEEEEeCCC----CcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEEe
Confidence 4668999999999999999999999987321 122345689999999888422 23344443 234899999
Q ss_pred CCCCCh
Q 003296 637 APKGTL 642 (833)
Q Consensus 637 ~~~g~L 642 (833)
++++..
T Consensus 92 l~~~~~ 97 (288)
T 3f7w_A 92 VDERPP 97 (288)
T ss_dssp CCCCCC
T ss_pred ecccCC
Confidence 987654
No 430
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.41 E-value=0.00058 Score=75.04 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=49.2
Q ss_pred CCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccc--cccccccccccCC---cccccCcchhhHHHH
Q 003296 678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAG--SVGYIPPEYAYTM---RVTMAGNVYSFGVIL 752 (833)
Q Consensus 678 ~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~---~~~~~~Dv~S~Gvvl 752 (833)
...++|+|++|.||+++.++ +++.||+.+....+... .....+ ...|++|+..... .-....++.+....+
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~D---la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFD---IGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQT 306 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHH---HHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHH---HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 56799999999999998776 99999998876532211 011111 2346666654311 122334555777788
Q ss_pred HHHHhCC
Q 003296 753 LELLTGK 759 (833)
Q Consensus 753 ~elltg~ 759 (833)
|+..+++
T Consensus 307 ~~~y~~~ 313 (420)
T 2pyw_A 307 WNLFNKR 313 (420)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
No 431
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.21 E-value=0.00021 Score=67.19 Aligned_cols=34 Identities=6% Similarity=0.157 Sum_probs=14.1
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCcEEEccCC
Q 003296 244 KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN 277 (833)
Q Consensus 244 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 277 (833)
+|+.||++++.++..--..+.+|++|+.|+|+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444332223334444444444443
No 432
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.99 E-value=0.00016 Score=69.23 Aligned_cols=63 Identities=8% Similarity=0.057 Sum_probs=28.2
Q ss_pred CCCCCEEECCCC-CCCC----cccccccCCCCCCEEeCcCCcCCCCC----CcccCCCCCCCEEEccCCcCc
Q 003296 29 FAGLEVLDFSSN-NLNG----NINLQFDELVSLKSLNLSKNKFNGFL----PINLGKTKALEELVLSGNAFH 91 (833)
Q Consensus 29 l~~L~~L~Ls~N-~l~~----~~~~~f~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~ 91 (833)
-+.|+.|+|++| +|.. .+..++..-+.|+.|+|++|.|.... ...+...+.|++|+|++|.|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 345555555553 4431 11223344455555555555554211 112223444555555555554
No 433
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.92 E-value=0.002 Score=68.21 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=28.6
Q ss_pred CCCeeecCCCccceeeCCC----CCceeccceeeeeeC
Q 003296 678 SNPILLLDLSTRNIFLKSL----KEPQIGDIELCKVID 711 (833)
Q Consensus 678 ~~~iiHrdlk~~Nill~~~----~~~ki~dfgl~~~~~ 711 (833)
...++|+|+.+.||+++.+ ..+.+.||+.+....
T Consensus 182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~ 219 (333)
T 3csv_A 182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGH 219 (333)
T ss_dssp CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEEC
T ss_pred CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCC
Confidence 4579999999999999874 678999999887654
No 434
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.81 E-value=0.00034 Score=67.07 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=70.7
Q ss_pred CCCCCCEEECCCC-CCCC--c----ccccCCCCCCEEECCCCCCCCcc----cccccCCCCCCEEeCcCCcCCCCC----
Q 003296 6 GIDGLKLLNFSKN-ELVS--L----PTFNGFAGLEVLDFSSNNLNGNI----NLQFDELVSLKSLNLSKNKFNGFL---- 70 (833)
Q Consensus 6 ~l~~L~~L~ls~N-~l~~--i----~~f~~l~~L~~L~Ls~N~l~~~~----~~~f~~l~~L~~L~Ls~N~l~~~~---- 70 (833)
+-+.|+.|+|++| .|.. . .++..-+.|+.|+|++|+|...- ...+..-+.|++|+|++|.|...-
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4578999999996 8764 2 24566778999999999997432 334556689999999999997422
Q ss_pred CcccCCCCCCCEEEccCCcC---ccc----CCccccCCCCCCEEeccCCc
Q 003296 71 PINLGKTKALEELVLSGNAF---HGE----IPKGIADYRNLTLIDLSANN 113 (833)
Q Consensus 71 p~~~~~l~~L~~L~L~~N~l---~~~----~p~~~~~l~~L~~L~Ls~N~ 113 (833)
-..+...+.|++|+|++|.. ... +...+..-+.|+.|+++.|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 23455566688888875532 211 12233334455555555543
No 435
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.0024 Score=57.02 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=20.2
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEeccCCcC
Q 003296 79 ALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNL 114 (833)
Q Consensus 79 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 114 (833)
+|++|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555555555555555555566665554
No 436
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.62 E-value=0.0055 Score=63.74 Aligned_cols=139 Identities=14% Similarity=0.021 Sum_probs=75.7
Q ss_pred ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcc-cceEEEecCCceEEEEeeC-
Q 003296 560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVM-TPLAYVLASDSAYLFYEYA- 637 (833)
Q Consensus 560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv-~~~~~~~~~~~~~lv~ey~- 637 (833)
.+.++.|....+|+. ..+++|+-..... ......+|+++++.+....+. +++++ +++.-++|+||+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~-----~~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~ 90 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTE-----EYINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIA 90 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC---------CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCT
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCcc-----ceeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecC
Confidence 456788889999999 6788888732111 112235688888777533343 34433 444567899999
Q ss_pred CCCChhh------------------hhhcCCCC---CCC-HHHHHHHHHH--------------HHHHH----Hhhh-cC
Q 003296 638 PKGTLFD------------------VLHGCLEN---ALD-WASRYSIAVG--------------VAQGL----AFLH-GF 676 (833)
Q Consensus 638 ~~g~L~~------------------~l~~~~~~---~l~-~~~~~~i~~~--------------i~~~l----~ylH-~~ 676 (833)
++.++.. .+|..... ..+ +.....+... +.+.+ +.+. ..
T Consensus 91 ~g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 170 (301)
T 3dxq_A 91 GAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHP 170 (301)
T ss_dssp TCEECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSC
T ss_pred CCccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcC
Confidence 5544421 11211100 011 1111111110 11111 1111 11
Q ss_pred CCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 677 TSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 677 ~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
....++|+|+.+.||+ ..++.+.+.||..+....
T Consensus 171 ~~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g~ 204 (301)
T 3dxq_A 171 LPLAACHCDPLCENFL-DTGERMWIVDWEYSGMND 204 (301)
T ss_dssp CCCEEECSCCCGGGEE-ECSSCEEECCCTTCEEEC
T ss_pred CCceeeccCCCcCCEE-ECCCCEEEEecccccCCC
Confidence 2345899999999999 556678999998877543
No 437
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.47 E-value=0.0039 Score=65.59 Aligned_cols=141 Identities=10% Similarity=0.042 Sum_probs=78.8
Q ss_pred ccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC--cccceEE------EecCCceEEE
Q 003296 562 VELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN--VMTPLAY------VLASDSAYLF 633 (833)
Q Consensus 562 ~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~~~~~------~~~~~~~~lv 633 (833)
.++.|....+|+....+| .+++|..... .....+..|+++++.+.... +.+++.. ....+..++|
T Consensus 29 ~i~~G~~n~~~~v~~~~g-~~vlk~~~~~------~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l 101 (322)
T 2ppq_A 29 GIAEGVENSNFLLHTTKD-PLILTLYEKR------VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAAL 101 (322)
T ss_dssp EECC---EEEEEEEESSC-CEEEEEECC---------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEE
T ss_pred ccCCCcccceEEEEeCCc-cEEEEEeCCC------CCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEE
Confidence 455677789999987655 6889988421 12345677888887764212 2223321 1224567899
Q ss_pred EeeCCCCChhh--------------hhhcCC----CC------CCCHHHHHHH------------HHHHHHHHHhhhc--
Q 003296 634 YEYAPKGTLFD--------------VLHGCL----EN------ALDWASRYSI------------AVGVAQGLAFLHG-- 675 (833)
Q Consensus 634 ~ey~~~g~L~~--------------~l~~~~----~~------~l~~~~~~~i------------~~~i~~~l~ylH~-- 675 (833)
|||++|..+.. .+|... .. ...|.....- ...+.+.+++++.
T Consensus 102 ~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~ 181 (322)
T 2ppq_A 102 ISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHW 181 (322)
T ss_dssp EECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHC
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhC
Confidence 99999865421 122110 00 0124331110 0113344455542
Q ss_pred --CCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296 676 --FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709 (833)
Q Consensus 676 --~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~ 709 (833)
.....++|+|+.+.||+++.+..+.+.||+.+..
T Consensus 182 ~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 182 PKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp CCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred cccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 1235689999999999998776567999987654
No 438
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.41 E-value=0.029 Score=58.96 Aligned_cols=141 Identities=11% Similarity=0.031 Sum_probs=81.5
Q ss_pred ccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC--CcccceEE-----EecCCceEEEE
Q 003296 562 VELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS--NVMTPLAY-----VLASDSAYLFY 634 (833)
Q Consensus 562 ~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~--niv~~~~~-----~~~~~~~~lv~ 634 (833)
.++ |....||+...++|+.+++|...... .....+..|.++++.+... .+.+++.. ....+..++||
T Consensus 33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-----~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~ 106 (328)
T 1zyl_A 33 PLN-SYENRVYQFQDEDRRRFVVKFYRPER-----WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVF 106 (328)
T ss_dssp EEC-CSSSEEEEECCTTCCCEEEEEECTTT-----SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEE
T ss_pred eec-CcccceEEEEcCCCCEEEEEEcCCCC-----CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEE
Confidence 355 77889999888788889999984111 1245677788888777422 23444443 12245668899
Q ss_pred eeCCCCChhh--------------hhhcC----C---CCCCCHHHH----H------------------HHHHHHHHHHH
Q 003296 635 EYAPKGTLFD--------------VLHGC----L---ENALDWASR----Y------------------SIAVGVAQGLA 671 (833)
Q Consensus 635 ey~~~g~L~~--------------~l~~~----~---~~~l~~~~~----~------------------~i~~~i~~~l~ 671 (833)
||++|..+.. .+|.. . ....++... . ..+..++..+.
T Consensus 107 ~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (328)
T 1zyl_A 107 PSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVT 186 (328)
T ss_dssp ECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 9998854321 01210 0 012233211 0 01111122222
Q ss_pred hhh-cCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 672 FLH-GFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 672 ylH-~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
-.. ......++|+|+++.||+++ + .+.+.||+.+...
T Consensus 187 ~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g 224 (328)
T 1zyl_A 187 AHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARNG 224 (328)
T ss_dssp HHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCEE
T ss_pred HHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCcC
Confidence 111 11245689999999999998 4 7899999877654
No 439
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.17 E-value=0.0079 Score=65.94 Aligned_cols=72 Identities=10% Similarity=0.033 Sum_probs=47.8
Q ss_pred cccccCcccEEEEEEcCC--------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc-ccceEEEecCCceE
Q 003296 561 NVELKTRFSTYYKAVMPS--------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV-MTPLAYVLASDSAY 631 (833)
Q Consensus 561 ~~ig~g~~g~vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~~~~~~~~~~~~~ 631 (833)
+.++.|....||++..++ +..+++|+-... .....+.+|..+++.+...++ .++++.+. + .
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~------~~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g 148 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP------ETESHLVAESVIFTLLSERHLGPKLYGIFS--G--G 148 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC------CCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--E
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC------CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--C
Confidence 356677788999998753 578888887211 111456789999988854444 45566543 2 3
Q ss_pred EEEeeCCCCCh
Q 003296 632 LFYEYAPKGTL 642 (833)
Q Consensus 632 lv~ey~~~g~L 642 (833)
+||||++|.++
T Consensus 149 ~v~e~l~G~~l 159 (429)
T 1nw1_A 149 RLEEYIPSRPL 159 (429)
T ss_dssp EEECCCCEEEC
T ss_pred EEEEEeCCccc
Confidence 89999986444
No 440
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.01 E-value=0.017 Score=61.78 Aligned_cols=140 Identities=12% Similarity=0.081 Sum_probs=81.3
Q ss_pred ccccCcccEEEEEEcC--------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc-ccceEEEecCCceEE
Q 003296 562 VELKTRFSTYYKAVMP--------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV-MTPLAYVLASDSAYL 632 (833)
Q Consensus 562 ~ig~g~~g~vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~~~~~~~~~~~~~l 632 (833)
.+..|....+|++..+ ++..|++|+-... ........+|.++++.+.--.+ .++++++.. .+
T Consensus 57 ~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-----~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~ 127 (379)
T 3feg_A 57 PVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-----LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GR 127 (379)
T ss_dssp EC-----CCEEEEECCTTSCCCSSCCSEEEEEECC--------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EE
T ss_pred EcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-----cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----cc
Confidence 4555667788998875 3578889886211 1234567799999988853333 445555543 29
Q ss_pred EEeeCCCCChhhh-----------------hhcCC---CCCCC--HHHHHHHHHHHHH-------------------HHH
Q 003296 633 FYEYAPKGTLFDV-----------------LHGCL---ENALD--WASRYSIAVGVAQ-------------------GLA 671 (833)
Q Consensus 633 v~ey~~~g~L~~~-----------------l~~~~---~~~l~--~~~~~~i~~~i~~-------------------~l~ 671 (833)
||||++|..+..- +|... ..... |.+..++..++.. .+.
T Consensus 128 v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (379)
T 3feg_A 128 LEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMG 207 (379)
T ss_dssp EEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHH
T ss_pred EEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHH
Confidence 9999998655311 12211 11122 4455555444322 122
Q ss_pred h----hhc-CCCCCeeecCCCccceeeCCC----CCceeccceeeeee
Q 003296 672 F----LHG-FTSNPILLLDLSTRNIFLKSL----KEPQIGDIELCKVI 710 (833)
Q Consensus 672 y----lH~-~~~~~iiHrdlk~~Nill~~~----~~~ki~dfgl~~~~ 710 (833)
. |.. .....++|+|+.+.||+++.+ +.+.+.||..|...
T Consensus 208 ~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~ 255 (379)
T 3feg_A 208 NLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYN 255 (379)
T ss_dssp HHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcC
Confidence 2 221 123468999999999999876 68899999877643
No 441
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=95.92 E-value=0.031 Score=59.08 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=28.9
Q ss_pred CCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296 678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711 (833)
Q Consensus 678 ~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~ 711 (833)
...++|+|+.+.||+++.++.+.+.||+.+....
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~~ 238 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPMLAP 238 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEEEC
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCeeCC
Confidence 3568999999999999987889999998776543
No 442
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=95.56 E-value=0.028 Score=61.85 Aligned_cols=73 Identities=14% Similarity=0.052 Sum_probs=46.0
Q ss_pred cccccCcccEEEEEEcCC-CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcc-cceEEEecCCceEEEEeeCC
Q 003296 561 NVELKTRFSTYYKAVMPS-GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVM-TPLAYVLASDSAYLFYEYAP 638 (833)
Q Consensus 561 ~~ig~g~~g~vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv-~~~~~~~~~~~~~lv~ey~~ 638 (833)
+.|+.|-...+|+...++ +..+++|+-.... ...-.-.+|..+++.+...+++ ++++++. + .+||||++
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-----~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~ 184 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKT-----DEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMD 184 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-C-----CSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCC
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCCh-----hhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeC
Confidence 356677788999998765 5788888763211 1111125899999988755554 5566652 2 35999999
Q ss_pred CCCh
Q 003296 639 KGTL 642 (833)
Q Consensus 639 ~g~L 642 (833)
|.++
T Consensus 185 G~~l 188 (458)
T 2qg7_A 185 GYAL 188 (458)
T ss_dssp SEEC
T ss_pred CccC
Confidence 7544
No 443
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=95.45 E-value=0.021 Score=61.31 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=42.6
Q ss_pred cccccCcccEEEEEEcCC---------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcc-cceEEEecCCce
Q 003296 561 NVELKTRFSTYYKAVMPS---------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVM-TPLAYVLASDSA 630 (833)
Q Consensus 561 ~~ig~g~~g~vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv-~~~~~~~~~~~~ 630 (833)
..++.|..-.+|+....+ +..+++|+-..... ......+|.++++.+....++ ++++.. + -
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-----~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~ 109 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-----ELYNTISEFEVYKTMSKYKIAPQLLNTF--N--G 109 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-----GTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--T
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-----ceecHHHHHHHHHHHHhcCCCCceEEec--C--C
Confidence 345667778899988654 26788887632111 111246788888887533443 555543 2 3
Q ss_pred EEEEeeCCCCCh
Q 003296 631 YLFYEYAPKGTL 642 (833)
Q Consensus 631 ~lv~ey~~~g~L 642 (833)
++||||++|..+
T Consensus 110 ~~v~e~i~G~~l 121 (369)
T 3c5i_A 110 GRIEEWLYGDPL 121 (369)
T ss_dssp EEEEECCCSEEC
T ss_pred cEEEEEecCCcC
Confidence 789999997543
No 444
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=95.21 E-value=0.038 Score=53.11 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=64.0
Q ss_pred ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccc
Q 003296 641 TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720 (833)
Q Consensus 641 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~ 720 (833)
+|.++|... +.++++.+++.++.|.+++|.-.-.. ..+ ..+=+-|..|++..+|.+...+ +.+.
T Consensus 34 SL~eIL~~~-~~PlsEEqaWALc~Qc~~~L~~~~~~-~~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~------------ 97 (229)
T 2yle_A 34 SLEEILRLY-NQPINEEQAWAVCYQCCGSLRAAARR-RQP-RHRVRSAAQIRVWRDGAVTLAP-AADD------------ 97 (229)
T ss_dssp EHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCCSGGGEEEETTSCEEECC-C---------------
T ss_pred cHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHhhhhc-ccC-CceecCCcceEEecCCceeccc-cccc------------
Confidence 789998854 56899999999999999998766100 001 1223446888888888776553 1110
Q ss_pred cccccccccccccccCCcccccCcchhhHHHHHHHHhCCCc
Q 003296 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTA 761 (833)
Q Consensus 721 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p 761 (833)
.....+.|||... ...+.+.=|||+|+++|.-+--..|
T Consensus 98 --~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 --AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp -----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred --ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 1122456888764 3456788899999999998864444
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=93.28 E-value=0.13 Score=55.25 Aligned_cols=144 Identities=12% Similarity=0.092 Sum_probs=79.4
Q ss_pred ccccCcccEEEEEEcCC--------CceEEEEEccccchhh-------hcc-------ChhHHHHHHHHHhcCCCCCc-c
Q 003296 562 VELKTRFSTYYKAVMPS--------GMSYFIKKLNWSDKIF-------QLG-------SHHKFDKELEVLGKLSNSNV-M 618 (833)
Q Consensus 562 ~ig~g~~g~vy~~~~~~--------~~~vavK~~~~~~~~~-------~~~-------~~~~~~~E~~~l~~l~H~ni-v 618 (833)
.+..|-...+|++..++ +..|.++.-....... ..- ..+....|.++++.+....+ .
T Consensus 59 ~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~P 138 (401)
T 3f2s_A 59 VIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLGP 138 (401)
T ss_dssp EEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSSC
T ss_pred EcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCCC
Confidence 34456677889888754 3678888763221100 000 11233458999888854444 4
Q ss_pred cceEEEecCCceEEEEeeCCCCChhh--h---------------hhcCC---CCCCC--HHHHHHHHHHHH---------
Q 003296 619 TPLAYVLASDSAYLFYEYAPKGTLFD--V---------------LHGCL---ENALD--WASRYSIAVGVA--------- 667 (833)
Q Consensus 619 ~~~~~~~~~~~~~lv~ey~~~g~L~~--~---------------l~~~~---~~~l~--~~~~~~i~~~i~--------- 667 (833)
++++++.. . +|+||++|-+|.. + +|... ..... |.+..++..++.
T Consensus 139 kl~~~~~~--G--~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~ 214 (401)
T 3f2s_A 139 KLYGIFPQ--G--RLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESR 214 (401)
T ss_dssp CEEEEETT--E--EEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHHH
T ss_pred eEEEEeCC--C--eEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchhh
Confidence 56666532 2 8999999755421 1 12111 11222 334444443321
Q ss_pred -------------HHH----HhhhcC-CCCCeeecCCCccceeeCCC------CCceeccceeeee
Q 003296 668 -------------QGL----AFLHGF-TSNPILLLDLSTRNIFLKSL------KEPQIGDIELCKV 709 (833)
Q Consensus 668 -------------~~l----~ylH~~-~~~~iiHrdlk~~Nill~~~------~~~ki~dfgl~~~ 709 (833)
.-+ .++... ....++|+|+.+.||+++.+ +.+.+.||..|..
T Consensus 215 ~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 215 IKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 111 223221 23468999999999999876 6888999987654
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=91.12 E-value=0.55 Score=50.85 Aligned_cols=139 Identities=15% Similarity=0.095 Sum_probs=80.7
Q ss_pred ccccCcccEEEEEEcCC--------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc-ccceEEEecCCceEE
Q 003296 562 VELKTRFSTYYKAVMPS--------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV-MTPLAYVLASDSAYL 632 (833)
Q Consensus 562 ~ig~g~~g~vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~~~~~~~~~~~~~l 632 (833)
.+..|....+|+...++ +..|++|+-... . ...-+-.+|.++++.+.-..+ .++++.+ . -++
T Consensus 77 ~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~-t----~~~idR~~E~~~l~~L~~~gi~P~l~~~~--~--~~~ 147 (424)
T 3mes_A 77 QIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKH-V----GKFYDSKVELDVFRYLSNINIAPNIIADF--P--EGR 147 (424)
T ss_dssp EECCCSSSEEEEEEECCC-----CCCSEEEEEECCCC-C-----CCCCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEE
T ss_pred EcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCC-c----chhcCHHHHHHHHHHHHhcCCCCCEEEEc--C--CCE
Confidence 45567777899988753 678888886321 1 111234678888888753333 3445433 2 378
Q ss_pred EEeeCCCCChhh--h---------------hhcC-----------CCCCCCHHHHHHHHHHH------------------
Q 003296 633 FYEYAPKGTLFD--V---------------LHGC-----------LENALDWASRYSIAVGV------------------ 666 (833)
Q Consensus 633 v~ey~~~g~L~~--~---------------l~~~-----------~~~~l~~~~~~~i~~~i------------------ 666 (833)
||||++|..|.. . +|.. ...+--|.+..++..++
T Consensus 148 I~efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 227 (424)
T 3mes_A 148 IEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSK 227 (424)
T ss_dssp EEECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHH
T ss_pred EEEEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHH
Confidence 999999865421 0 1110 01111244444443222
Q ss_pred -HHHHHhhhc---------------------CCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296 667 -AQGLAFLHG---------------------FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710 (833)
Q Consensus 667 -~~~l~ylH~---------------------~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~ 710 (833)
...+.+|.. .....++|+|+.+.||+ +.++.+.+.||..|...
T Consensus 228 l~~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~~ 292 (424)
T 3mes_A 228 ILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAIN 292 (424)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCcC
Confidence 122333321 11345899999999999 77888999999887654
No 447
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=87.15 E-value=0.1 Score=57.50 Aligned_cols=61 Identities=3% Similarity=-0.108 Sum_probs=17.4
Q ss_pred cccccCcccEEEEEEcCC-CceEEE------EEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296 561 NVELKTRFSTYYKAVMPS-GMSYFI------KKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626 (833)
Q Consensus 561 ~~ig~g~~g~vy~~~~~~-~~~vav------K~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~ 626 (833)
+.+| ||.||+|.+.. ..+||| |..+.. .........|.+|..++++.+|||+++.+++...
T Consensus 148 ~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~--~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 148 EHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQD--GVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp TTSS---BCCC---------CCBGGGC-------------------------------------CBCCCEEEE
T ss_pred ccCC---chhhhcccccccCCchhhhhccCccccccc--cccccccccccccccccccccccccCCCcceEEe
Confidence 4455 99999999853 478999 665311 1122334579999999999999999999887753
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=81.41 E-value=3 Score=39.99 Aligned_cols=123 Identities=11% Similarity=0.156 Sum_probs=82.0
Q ss_pred HHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeee
Q 003296 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683 (833)
Q Consensus 604 ~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiH 683 (833)
.|+.+|.. .||+.+.. ..-..++.+.+.|+.-+.+-=+..++ ..+...+++++..|+....+++. -+|
T Consensus 35 ~el~LL~~-~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~ik-----~~~~~eKlr~l~ni~~l~~~~~~-----r~t 102 (215)
T 4ann_A 35 HLMYLLEQ-HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDNIK-----SFTKNEKLRYLLNIKNLEEVNRT-----RYT 102 (215)
T ss_dssp GGGGGGGS-CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGGGG-----GSCHHHHHHHHHHGGGGGGGGGS-----SEE
T ss_pred HHHHHHhc-cCCcccce-EEEEcccEEEEEEEcCcccCCHHHHH-----hcCHHHHHHHHHHHHHHHHHhcC-----ceE
Confidence 35555544 58988876 56666777777666544332222243 37889999999999887776662 367
Q ss_pred cCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcc-hhhHHHHHHHHhCCCcc
Q 003296 684 LDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNV-YSFGVILLELLTGKTAV 762 (833)
Q Consensus 684 rdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv-~S~Gvvl~elltg~~p~ 762 (833)
--+.|+||.+|.++.+++.-.|+...+ +|.-. + ..|- -.+=|++..+++++..|
T Consensus 103 f~L~P~NL~f~~~~~p~i~~RGik~~l-------------------~P~~~-----~-ee~fL~qyKAliiall~~K~~F 157 (215)
T 4ann_A 103 FVLAPDELFFTRDGLPIAKTRGLQNVV-------------------DPLPV-----S-EAEFLTRYKALVICAFNEKQSF 157 (215)
T ss_dssp CCCSGGGEEECTTSCEEESCCEETTTB-------------------SCCCC-----C-HHHHHHHHHHHHHHHHCTTCCH
T ss_pred EEEecceEEEcCCCCEEEEEccCccCC-------------------CCCCC-----C-HHHHHHHHHHHHHHHHcCCCCH
Confidence 789999999999999999877754322 22211 1 1122 24667888888998888
Q ss_pred c
Q 003296 763 N 763 (833)
Q Consensus 763 ~ 763 (833)
+
T Consensus 158 e 158 (215)
T 4ann_A 158 D 158 (215)
T ss_dssp H
T ss_pred H
Confidence 5
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=81.19 E-value=4.6 Score=38.82 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=79.8
Q ss_pred HHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHH-hhhcCCCCCeeec
Q 003296 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLA-FLHGFTSNPILLL 684 (833)
Q Consensus 606 ~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~-ylH~~~~~~iiHr 684 (833)
..+|.. .||.. -...-.+++.+.+.|+--+++-=+..++ ..+...+++++..++.-.. +++ .-+|-
T Consensus 42 ~~lL~~-~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~-----~~~~~eKlrll~nl~~L~~~~~~-----~r~tf 108 (219)
T 4ano_A 42 LEVLKE-VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR-----KTTLLSRIRAAIHLVSKVKHHSA-----RRLIF 108 (219)
T ss_dssp GGGGGG-SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH-----TSCHHHHHHHHHHHHHHHSSCCS-----SSEEC
T ss_pred HHHHhc-cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH-----hcCHHHHHHHHHHHHHHHHHhhh-----CceeE
Confidence 334433 58888 4455567788888887665543334444 3788899999999988776 555 24677
Q ss_pred CCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcch-hhHHHHHHHHhCCCccc
Q 003296 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY-SFGVILLELLTGKTAVN 763 (833)
Q Consensus 685 dlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~-S~Gvvl~elltg~~p~~ 763 (833)
-+.|+||.+|.++.+++.-.|+-.. |+|.-.. ..|-| .+=|++..++.++..|+
T Consensus 109 ~l~P~NL~f~~~~~p~i~hRGi~~~-------------------lpP~e~~------ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 109 IVCPENLMFNRALEPFFLHVGVKES-------------------LPPDEWD------DERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp CCCGGGEEECTTCCEEESCCEETTT-------------------BSSCSCC------HHHHHHHHHHHHHHHTTCSSCHH
T ss_pred EEeCceEEEeCCCcEEEEEcCCccc-------------------CCCCCCC------HHHHHHHHHHHHHHHHcCCCCHH
Confidence 7889999999999999987775332 3333211 11222 45677778888887774
No 450
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=79.60 E-value=2.2 Score=29.19 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 003296 487 IVIALAAAILAVGVVSIF 504 (833)
Q Consensus 487 i~i~i~~~~l~~~~~~~~ 504 (833)
++.++++++++++++++.
T Consensus 13 IA~gVVgGv~~~~ii~~~ 30 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALG 30 (44)
T ss_dssp STHHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHHHH
Confidence 445555544444333333
No 451
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=79.43 E-value=3.3 Score=44.42 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=24.7
Q ss_pred eeecCCCccceee------CCCCCceeccceeeeee
Q 003296 681 ILLLDLSTRNIFL------KSLKEPQIGDIELCKVI 710 (833)
Q Consensus 681 iiHrdlk~~Nill------~~~~~~ki~dfgl~~~~ 710 (833)
++|.|+.+.||++ +++..+++.||-.|..-
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~n 281 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYN 281 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccCC
Confidence 5799999999999 45567899999887653
No 452
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=76.83 E-value=2.6 Score=28.75 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 003296 487 IVIALAAAILAVGVVS 502 (833)
Q Consensus 487 i~i~i~~~~l~~~~~~ 502 (833)
++.+++++++++++++
T Consensus 12 IA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHH
Confidence 4444444444433333
No 453
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.81 E-value=12 Score=30.96 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296 41 NLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG 87 (833)
Q Consensus 41 ~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 87 (833)
.++.|...+|.++.+|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344445555555555555555432 3334444555555555555543
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.02 E-value=39 Score=27.77 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=22.3
Q ss_pred cCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296 65 KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA 111 (833)
Q Consensus 65 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 111 (833)
.++.+...+|.++.+|+.+.|..+ ++.+-..+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444555555555555555443 3334444455555555554443
No 455
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=28.52 E-value=77 Score=32.40 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=40.2
Q ss_pred ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhh-hcCCCCCeee-cCCCccceeeCCCCC-ceeccce
Q 003296 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFL-HGFTSNPILL-LDLSTRNIFLKSLKE-PQIGDIE 705 (833)
Q Consensus 629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~yl-H~~~~~~iiH-rdlk~~Nill~~~~~-~ki~dfg 705 (833)
..+++|||.+|..|.+.=+......+....... .+-.-++.++ +...+.+.+. .--.++|||++.+.. +.++|-+
T Consensus 156 ~~~l~meyv~G~~L~e~~~~~~~~~f~~~~~k~--LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~n~~~~~IDhn 233 (342)
T 1cja_A 156 ANILLMELVRGITLNKLTTTSAPEVLTKSTMQQ--LGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGATVVPIDSK 233 (342)
T ss_dssp SEEEEEECCCEEESTTCCSSSHHHHSCHHHHHH--HHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTTCEEECSCC
T ss_pred cceehhhhcCCCccccchhhhhhhhcCHHHHHh--hchhheehhhhcCCccCcccccCCCChhheEEeCCCCeEEEEcCC
Confidence 567999999976655432210001122222111 1112344444 4443333322 225789999986554 6677877
Q ss_pred eeee
Q 003296 706 LCKV 709 (833)
Q Consensus 706 l~~~ 709 (833)
.+..
T Consensus 234 ~af~ 237 (342)
T 1cja_A 234 IIPL 237 (342)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7643
No 456
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=25.24 E-value=3e+02 Score=30.71 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=49.3
Q ss_pred ccceEEEecCCceEEEEeeCCCCChhhhhhc----------CCCC-----CCCHHHHHHHHHHHHH--HHHhhhcCCCCC
Q 003296 618 MTPLAYVLASDSAYLFYEYAPKGTLFDVLHG----------CLEN-----ALDWASRYSIAVGVAQ--GLAFLHGFTSNP 680 (833)
Q Consensus 618 v~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~----------~~~~-----~l~~~~~~~i~~~i~~--~l~ylH~~~~~~ 680 (833)
++.|.+.......-+ .|++++-++.+.+.. .... ...|..+..++..+|- -+.|+=..
T Consensus 402 i~~Y~Vipls~~~Gl-IE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YILGi---- 476 (614)
T 3ls8_A 402 LTPYKVLATSTKHGF-MQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGV---- 476 (614)
T ss_dssp CCCCCEEESSSSEEE-EECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred eeccEEEEecCCCce-EEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheeeec----
Confidence 344454444444333 477776555555432 1111 1235666666665543 44565522
Q ss_pred eeecCCCccceeeCCCCCceeccceee
Q 003296 681 ILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 681 iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
+|=.++|||+|.+|++--+|||.+
T Consensus 477 ---gDRH~~NILld~tG~v~HIDFG~~ 500 (614)
T 3ls8_A 477 ---GDRHLDNLLLTKTGKLFHIDFGYI 500 (614)
T ss_dssp ---CCCCTTSEEECTTSCEEECCCSSC
T ss_pred ---cCCCCcceeEcCCCCEeeeehHHh
Confidence 366799999999999999999986
No 457
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=21.77 E-value=3.2e+02 Score=31.01 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH--HHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296 657 ASRYSIAVGVA--QGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707 (833)
Q Consensus 657 ~~~~~i~~~i~--~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~ 707 (833)
..+..++..+| .-+.|+=.. +|=.++|||+|.+|++--+|||.+
T Consensus 529 ~ar~nF~~SlA~~Svv~YILGl-------GDRH~~NILid~tG~v~HIDFG~~ 574 (696)
T 2x6h_A 529 EVMDTYIKSCAGYCVITYLLGV-------GDRHLDNLLLTTNGKLFHIDFGYI 574 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------CCCCTTTEEECTTSCEEECCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHccC-------CCCCCcceEEeCCCCEEEEeehhh
Confidence 34555655544 234555421 477899999999999999999986
Done!