Your job contains 1 sequence.
>003297
MSEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHG
SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQ
NVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSV
SLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVA
NLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVN
GPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLRPMAPA
AANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPV
FSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASM
GQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPL
SVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRSASASET
LAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQ
TLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQQLQQQQQQQQHQQMQSQLQHQQLSQ
LQQQQQQLPQLQQQIPQLQQQQQIPQLQQQSMPQLQQQQQLPQLQQQQQLPQMQQQQQLP
QLQQQQQLSQPQQMVGSGMGQGYVQGPGRTQLVSQGQVSSQGAPNIPGGGFMS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003297
(833 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2031200 - symbol:PFT1 "PHYTOCHROME AND FLOWERI... 2080 1.6e-219 2
UNIPROTKB|F1N3D4 - symbol:MED25 "Mediator of RNA polymera... 153 2.3e-12 3
UNIPROTKB|F1RHT9 - symbol:MED25 "Uncharacterized protein"... 153 6.4e-12 2
MGI|MGI:1922863 - symbol:Med25 "mediator of RNA polymeras... 153 7.3e-12 3
UNIPROTKB|A2VE44 - symbol:MED25 "Mediator of RNA polymera... 153 7.3e-12 3
UNIPROTKB|Q71SY5 - symbol:MED25 "Mediator of RNA polymera... 153 3.1e-10 3
ZFIN|ZDB-GENE-040426-2850 - symbol:med25 "mediator of RNA... 178 6.3e-10 3
DICTYBASE|DDB_G0286967 - symbol:med25 "putative mediator ... 113 8.6e-08 4
WB|WBGene00019435 - symbol:K06A9.1 species:6239 "Caenorha... 144 1.2e-05 1
FB|FBgn0038760 - symbol:MED25 "Mediator complex subunit 2... 112 2.6e-05 2
POMBASE|SPAPB1E7.04c - symbol:SPAPB1E7.04c "chitinase (pr... 137 3.5e-05 1
POMBASE|SPBC215.13 - symbol:SPBC215.13 "sequence orphan" ... 128 0.00011 1
RGD|1305137 - symbol:Med25 "mediator complex subunit 25" ... 128 0.00014 1
ZFIN|ZDB-GENE-080618-2 - symbol:prdm1b "PR domain contain... 127 0.00014 1
WB|WBGene00019273 - symbol:H43E16.1 species:6239 "Caenorh... 128 0.00032 1
DICTYBASE|DDB_G0287399 - symbol:DDB_G0287399 species:4468... 122 0.00044 1
DICTYBASE|DDB_G0271670 - symbol:DDB_G0271670 species:4468... 120 0.00047 1
CGD|CAL0006203 - symbol:orf19.4906 species:5476 "Candida ... 91 0.00049 2
UNIPROTKB|Q5APQ2 - symbol:CaO19.4906 "Putative uncharacte... 91 0.00049 2
UNIPROTKB|F1RGR9 - symbol:F1RGR9 "Uncharacterized protein... 121 0.00082 1
WB|WBGene00019146 - symbol:H02F09.3 species:6239 "Caenorh... 124 0.00092 1
>TAIR|locus:2031200 [details] [associations]
symbol:PFT1 "PHYTOCHROME AND FLOWERING TIME 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0010114 "response to red light" evidence=IMP]
[GO:0010218 "response to far red light" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009867
"jasmonic acid mediated signaling pathway" evidence=IMP]
[GO:0031349 "positive regulation of defense response" evidence=IMP]
[GO:0050832 "defense response to fungus" evidence=IMP] [GO:0009911
"positive regulation of flower development" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR002035 SMART:SM00327
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0045893 EMBL:AC079281
GO:GO:0050832 GO:GO:0003677 GO:GO:0006351 GO:GO:0010218
GO:GO:0010114 GO:GO:0003713 GO:GO:0009911 GO:GO:0009585
GO:GO:0009908 GO:GO:0009867 GO:GO:0016592 GO:GO:0031349
EMBL:AY170377 IPI:IPI00520489 IPI:IPI00846807 PIR:G86385
RefSeq:NP_001077596.1 RefSeq:NP_173925.3 UniGene:At.17319
ProteinModelPortal:Q7XYY2 IntAct:Q7XYY2 STRING:Q7XYY2 PaxDb:Q7XYY2
PRIDE:Q7XYY2 EnsemblPlants:AT1G25540.1 GeneID:839141
KEGG:ath:AT1G25540 TAIR:At1g25540 eggNOG:NOG146385
InParanoid:Q7XYY2 KO:K15168 OMA:PLNQMQQ PhylomeDB:Q7XYY2
ProtClustDB:CLSN2680217 Genevestigator:Q7XYY2 InterPro:IPR021419
Pfam:PF11265 Uniprot:Q7XYY2
Length = 836
Score = 2080 (737.3 bits), Expect = 1.6e-219, Sum P(2) = 1.6e-219
Identities = 430/691 (62%), Positives = 513/691 (74%)
Query: 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTS-ASNVELSLVTFNTHGSY 62
KQLIV EGTAA+GPYWQ+IVSDYLEKIIR FC +EL G+ + S VELSLV FN+HGSY
Sbjct: 6 KQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSY 65
Query: 63 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNV 122
CACLVQRSGWT+DVDIFLHWLS+I F GGGFN+ A AEGL+EALMMFS P+G Q Q +
Sbjct: 66 CACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFS-PPSG-QAQPSN 123
Query: 123 DGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSL 182
D +RHCIL+ ASNPH LPTPVYRP++QN+++NEN +AQAESRLSDAETVA F +CSVSL
Sbjct: 124 DLKRHCILITASNPHILPTPVYRPRLQNVERNENGDAQAESRLSDAETVASYFAKCSVSL 183
Query: 183 SVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANL 242
SV+CPKQLP + A+YNA K N ++AD +D +KN +LVLISENF+EA AALS NL
Sbjct: 184 SVVCPKQLPTIRALYNAGKPNQQSADLSIDTAKNTFYLVLISENFVEACAALSH-SATNL 242
Query: 243 APNQNPVKMD---IAPVTSVTGPAPTSIPSVNGI--NRPPISVGNVPTATVKVEPSTVTS 297
Q+PVK+D +AP VTG P + S NG NR P+SVG VPTATVKVEPSTVTS
Sbjct: 243 PQTQSPVKVDRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTS 302
Query: 298 MVNGPTFPHIPSVPRPASQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPM 357
M P+FPHIP+V RPA+Q + +M+++ ++ P++KP+V P
Sbjct: 303 MAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRT 362
Query: 358 APAAANVNILNNLSQARQVMN--NAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVP 415
P N+ N L+ QV ++A G + S+GQ+ +AMHMSNMIS+GMA+S+P
Sbjct: 363 GPPGG-ANV-NLLNNLSQVRQVMSSAALAGAA---SSVGQSAVAMHMSNMISTGMATSLP 417
Query: 416 TSQPVFSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQ 475
SQ VFS+ Q Q Q+ G N+ S + + SN +SQPM
Sbjct: 418 PSQTVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQ--- 474
Query: 476 GGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQS 535
GM+QG+HSG M+Q GISMNQNMMSGLG VSSGTG M+PTPG+ QQAQS
Sbjct: 475 ---------GMNQGSHSGA-MMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQS 524
Query: 536 GMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRSA 595
G+Q L +N++A NMQLSQ +S A+ +SQSKYVKVWEG+LSGQRQGQPV IT+LEGYRSA
Sbjct: 525 GIQQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSA 584
Query: 596 SASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVI 655
SAS++LAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAM+QHGFLGQLQ+KKLCAVI
Sbjct: 585 SASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVI 644
Query: 656 QLPSQTLLLSVSDKACRLIGMLFPGDMVVFK 686
QLPSQTLLLSVSDKACRLIGMLFPGDMVVFK
Sbjct: 645 QLPSQTLLLSVSDKACRLIGMLFPGDMVVFK 675
Score = 63 (27.2 bits), Expect = 1.6e-219, Sum P(2) = 1.6e-219
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 800 GQGYVQGPGRTQLXXXXXXXXXXAPNIPGGGFM 832
GQ + Q PGR+Q PN+PG GFM
Sbjct: 808 GQAFAQAPGRSQ-----QGGGGGQPNMPGAGFM 835
>UNIPROTKB|F1N3D4 [details] [associations]
symbol:MED25 "Mediator of RNA polymerase II transcription
subunit 25" species:9913 "Bos taurus" [GO:2001178 "positive
regulation of mediator complex assembly" evidence=IEA] [GO:0071158
"positive regulation of cell cycle arrest" evidence=IEA]
[GO:0048147 "negative regulation of fibroblast proliferation"
evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0035563
"positive regulation of chromatin binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] GO:GO:0071158 GO:GO:0045944
GO:GO:0000122 GO:GO:0048147 InterPro:IPR021419 Pfam:PF11265
InterPro:IPR021394 InterPro:IPR021397 Pfam:PF11232 Pfam:PF11235
GeneTree:ENSGT00520000055653 GO:GO:0035563 GO:GO:2001178
OMA:PGQMLLS EMBL:DAAA02047485 EMBL:DAAA02047486 IPI:IPI00907370
Ensembl:ENSBTAT00000043183 Uniprot:F1N3D4
Length = 743
Score = 153 (58.9 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 47/143 (32%), Positives = 68/143 (47%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTHG 60
++ +EGTA +GPY++ + YL I F + G + + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGT--QYSLVVFNTVD 75
Query: 61 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQ 119
VQ T F+ WL I F GGG + IAEGLS AL +F + + +
Sbjct: 76 CAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFD---DFKKMR 132
Query: 120 QNVDGQRH--CILVAASNPHPLP 140
+ + GQ H C+L+ S P+ LP
Sbjct: 133 EQI-GQTHRVCLLICNSPPYLLP 154
Score = 97 (39.2 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 60/234 (25%), Positives = 88/234 (37%)
Query: 169 ETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNP--RAADPPVDNSKNPHFLVLISEN 226
ET+ + + + S++ P++LP L ++ A PP D S++P +VL+
Sbjct: 167 ETLVQKIGERGIYFSIVSPRKLPALRLLFEKAAPPAMLEPLQPPADVSQDPRHMVLVRGL 226
Query: 227 FMEARAALSRPGVANLAPNQNPVKMD-IAPVTSVTGPAPTS-IPSVNGINRPPISVGNVP 284
+ S PG L P Q PV + AP + AP +P V + P GN+
Sbjct: 227 VLPVGGG-SAPGP--LQPKQ-PVPLPPAAPAGATLSTAPQQPLPPVPQQYQVP---GNLS 279
Query: 285 TATVKVEPSTVTSMVN-----GPTFPHI-------PSVPRPASQGVXXXXXXXXXXXXXE 332
A V + + V + N GP F I P V P SQ
Sbjct: 280 AAQVAAQ-NAVEAAKNQKAGLGPRFSPINPLQQATPGVGPPYSQTQATQLPPGPPGAPKP 338
Query: 333 MITSGDS-VPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGG 385
S S V V P G++ P +P AP+ A +S A GG
Sbjct: 339 PPASQPSLVSTVAP-GPGLAPPAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGG 391
Score = 62 (26.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 32/117 (27%), Positives = 47/117 (40%)
Query: 513 PSGVSSGTGTMIPTPGMSQQAQSGMQPLS--VNNNTAVNMQLSQQTSSALHSSQSKYVKV 570
P+ S T+ P PG++ AQ G ++ V +Q + AL QS K+
Sbjct: 340 PASQPSLVSTVAPGPGLAPPAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGGQQSVSNKL 399
Query: 571 --WEGSLSGQRQGQPVFI---TKLEGYRSASA----SETLAAN-WPPTMQIVRLISQ 617
W G L Q + +P + TKL E L WP + I++LI Q
Sbjct: 400 LAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVNHGENLKTEQWPQKL-IMQLIPQ 455
Score = 52 (23.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 489 GNHSGGQMV-QNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMS---QQAQSGMQP 539
GN S Q+ QN + +N +GLGP S TPG+ Q Q+ P
Sbjct: 276 GNLSAAQVAAQNAVEAAKNQKAGLGPR-FSPINPLQQATPGVGPPYSQTQATQLP 329
Score = 45 (20.9 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 21/68 (30%), Positives = 25/68 (36%)
Query: 465 PSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMI 524
P QP GT+ A+ GQ QG G G P G SSG
Sbjct: 586 PPQPQPQGTVGASAAAGQP--QPQGAAPAPPGAPQG---PPGAAPGPPPPGPSSG----- 635
Query: 525 PTPGMSQQ 532
P+PG + Q
Sbjct: 636 PSPGANPQ 643
Score = 38 (18.4 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 513 PSGVSSGTGTMIPTPGMSQQAQ 534
P+G + T P P + QQ Q
Sbjct: 252 PAGATLSTAPQQPLPPVPQQYQ 273
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 512 GPSGVSSGTGTMIPTPGMSQQAQSGMQP 539
GP G + G P PG S G P
Sbjct: 619 GPPGAAPGP----PPPGPSSGPSPGANP 642
>UNIPROTKB|F1RHT9 [details] [associations]
symbol:MED25 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001178 "positive regulation of mediator complex
assembly" evidence=IEA] [GO:0071158 "positive regulation of cell
cycle arrest" evidence=IEA] [GO:0048147 "negative regulation of
fibroblast proliferation" evidence=IEA] [GO:0046965 "retinoid X
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0035563 "positive regulation of chromatin binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] GO:GO:0071158
GO:GO:0045944 GO:GO:0000122 GO:GO:0048147 KO:K15168
InterPro:IPR021419 Pfam:PF11265 InterPro:IPR021394
InterPro:IPR021406 InterPro:IPR021397 Pfam:PF11232 Pfam:PF11244
Pfam:PF11235 GeneTree:ENSGT00520000055653 GO:GO:0035563
GO:GO:2001178 OMA:PGQMLLS EMBL:CU694867 RefSeq:XP_003127384.1
Ensembl:ENSSSCT00000003552 GeneID:100519902 KEGG:ssc:100519902
Uniprot:F1RHT9
Length = 746
Score = 153 (58.9 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 47/143 (32%), Positives = 68/143 (47%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTHG 60
++ +EGTA +GPY++ + YL I F + G + + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGT--QYSLVVFNTVD 75
Query: 61 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQ 119
VQ T F+ WL I F GGG + IAEGLS AL +F + + +
Sbjct: 76 CAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFD---DFKKMR 132
Query: 120 QNVDGQRH--CILVAASNPHPLP 140
+ + GQ H C+L+ S P+ LP
Sbjct: 133 EQI-GQTHRVCLLICNSPPYLLP 154
Score = 94 (38.1 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 59/234 (25%), Positives = 88/234 (37%)
Query: 169 ETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNP--RAADPPVDNSKNPHFLVLISEN 226
E++ + + + S++ P++LP L ++ A PP D S++P +VL+
Sbjct: 167 ESLVQKIGERGIYFSIVSPRKLPALRLLFEKAAPPAMLEPLQPPADVSQDPRHMVLVRGL 226
Query: 227 FMEARAALSRPGVANLAPNQNPVKMDIAPVTSVT-GPAPTS-IPSVNGINRPPISVGNVP 284
+ S PG L P Q PV + AP + T AP +P V + P GN+
Sbjct: 227 VLPVGGG-SAPGP--LQPKQ-PVPLPPAPPSGATLSAAPQQPLPPVPQQYQVP---GNLS 279
Query: 285 TATVKVEPSTVTSMVN-----GPTFPHI-------PSVPRPASQGVXXXXXXXXXXXXXE 332
A V + + V + N GP F I P V P SQ
Sbjct: 280 AAQVAAQ-NAVEAAKNQKAGLGPRFSPINPLQQAAPGVGPPYSQAQAPPMPSGAPGASKP 338
Query: 333 MITSGDS-VPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGG 385
S S V V P G++ +P AP+ A +S A GG
Sbjct: 339 PPASQPSLVSTVAP-GPGLAPSAQPGAPSMAGTVAPGGVSGPSAAQLGAPALGG 391
Score = 65 (27.9 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 32/117 (27%), Positives = 47/117 (40%)
Query: 513 PSGVSSGTGTMIPTPGMSQQAQSGMQPLS--VNNNTAVNMQLSQQTSSALHSSQSKYVKV 570
P+ S T+ P PG++ AQ G ++ V +Q + AL QS K+
Sbjct: 340 PASQPSLVSTVAPGPGLAPSAQPGAPSMAGTVAPGGVSGPSAAQLGAPALGGQQSVSNKL 399
Query: 571 --WEGSLSGQRQGQPVFI---TKLEGYRSASA----SETLAAN-WPPTMQIVRLISQ 617
W G L Q + +P + TKL E L WP + I++LI Q
Sbjct: 400 LAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVNHGENLKTEQWPQKL-IMQLIPQ 455
Score = 52 (23.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 36/162 (22%), Positives = 55/162 (33%)
Query: 340 VPEVKPLVSGMSQ-PLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPM 398
+P P + +S P +P+ P + NLS A+ NA Q G P
Sbjct: 247 LPPAPPSGATLSAAPQQPLPPVPQQYQVPGNLSAAQVAAQNAVEAAKN----QKAGLGP- 301
Query: 399 AMHMSNMISSGMASSVPTSQPVFSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSN 458
S + + + + P P +S AQ Q S +++ P
Sbjct: 302 --RFSPI--NPLQQAAPGVGPPYSQAQAPPMPSGAPGASKPP-PASQPSLVSTVAPGPG- 355
Query: 459 LSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQM-VQN 499
L+ ++ P GT+ G G S GGQ V N
Sbjct: 356 LAPSAQPGAPSMAGTVAPGGVSGPSAAQLGAPALGGQQSVSN 397
Score = 51 (23.0 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 489 GNHSGGQMV-QNGISMNQNMMSGLGP 513
GN S Q+ QN + +N +GLGP
Sbjct: 276 GNLSAAQVAAQNAVEAAKNQKAGLGP 301
Score = 41 (19.5 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 132 AASNPHPLPTPVYRPQ 147
AA P P P P+ RPQ
Sbjct: 623 AAPGPPP-PGPILRPQ 637
Score = 37 (18.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 508 MSG-LGPSGVSSGTGTMIPTPGMS-QQAQS 535
M+G + P GVS + + P + QQ+ S
Sbjct: 367 MAGTVAPGGVSGPSAAQLGAPALGGQQSVS 396
>MGI|MGI:1922863 [details] [associations]
symbol:Med25 "mediator of RNA polymerase II transcription,
subunit 25 homolog (yeast)" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=ISO] [GO:0035563 "positive regulation of
chromatin binding" evidence=ISO] [GO:0042974 "retinoic acid
receptor binding" evidence=ISO;IPI] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046965 "retinoid X receptor binding"
evidence=ISO;IPI] [GO:0048147 "negative regulation of fibroblast
proliferation" evidence=ISO] [GO:0071158 "positive regulation of
cell cycle arrest" evidence=ISO] [GO:2001178 "positive regulation
of mediator complex assembly" evidence=ISO] InterPro:IPR002035
SMART:SM00327 MGI:MGI:1922863 GO:GO:0005654 GO:GO:0071158
GO:GO:0045944 GO:GO:0006351 GO:GO:0000122 Reactome:REACT_127416
GO:GO:0048147 Reactome:REACT_27166 KO:K15168 InterPro:IPR021419
Pfam:PF11265 CTD:81857 eggNOG:NOG79607 HOGENOM:HOG000113538
HOVERGEN:HBG108127 OrthoDB:EOG41JZC5 InterPro:IPR021394
InterPro:IPR021406 InterPro:IPR021397 Pfam:PF11232 Pfam:PF11244
Pfam:PF11235 GeneTree:ENSGT00520000055653 ChiTaRS:MED25
GO:GO:0035563 GO:GO:2001178 EMBL:AK148368 EMBL:AK149867
EMBL:BC021333 EMBL:BC031138 EMBL:BC071206 IPI:IPI00139172
IPI:IPI00867806 IPI:IPI00867820 IPI:IPI00867831 RefSeq:NP_083641.1
UniGene:Mm.157778 ProteinModelPortal:Q8VCB2 SMR:Q8VCB2
IntAct:Q8VCB2 MINT:MINT-5210237 STRING:Q8VCB2 PhosphoSite:Q8VCB2
PaxDb:Q8VCB2 PRIDE:Q8VCB2 Ensembl:ENSMUST00000003049 GeneID:75613
KEGG:mmu:75613 UCSC:uc009grm.1 UCSC:uc009grn.1 UCSC:uc009grs.1
InParanoid:Q8VCB2 OMA:PGQMLLS NextBio:343512 Bgee:Q8VCB2
Genevestigator:Q8VCB2 Uniprot:Q8VCB2
Length = 745
Score = 153 (58.9 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 47/143 (32%), Positives = 68/143 (47%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTHG 60
++ +EGTA +GPY++ + YL I F + G + + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEELRKHYLLPAIEYFNGGPPAETDFGGDYGGT--QYSLVVFNTVD 75
Query: 61 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQ 119
VQ T F+ WL I F GGG + IAEGLS AL +F + + +
Sbjct: 76 CAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFD---DFKKMR 132
Query: 120 QNVDGQRH--CILVAASNPHPLP 140
+ + GQ H C+L+ S P+ LP
Sbjct: 133 EQI-GQTHRVCLLICNSPPYLLP 154
Score = 80 (33.2 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 41/159 (25%), Positives = 71/159 (44%)
Query: 169 ETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADP---PVDNSKNPHFLVLISE 225
E++ + + + S++ P++LP L ++ A P +P P D S++P +VL+
Sbjct: 167 ESLVQKIGERGIHFSIVSPRKLPALRLLFEKAAP-PALLEPLQQPADVSQDPRHMVLVRG 225
Query: 226 NFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPA--PTSIPSVNGINRPPISVGNV 283
+ + S G +L Q V + AP ++ T A P ++P V + P GN+
Sbjct: 226 LVLPVGGS-STSG--SLQTKQ-AVPLPPAPASAATLSAAPPQALPPVPPQYQVP---GNL 278
Query: 284 PTATVK----VEPSTVTSMVNGPTFPHIPSVPRPASQGV 318
A V VE + GP F I + + A+ GV
Sbjct: 279 SAAQVAAQNAVEAAKSQKAGLGPRFSPINPLQQ-AAPGV 316
Score = 57 (25.1 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 32/117 (27%), Positives = 45/117 (38%)
Query: 513 PSGVSSGTGTMIPTPGMSQQAQSGMQPLS--VNNNTAVNMQLSQQTSSALHSSQSKYVKV 570
P+ S T+ P P ++ AQ G L+ V +Q AL QS K+
Sbjct: 340 PASQPSLVSTVAPGPVLAAPAQPGAPSLAGTVTPGGVNGPSAAQLGGPALGGQQSVSNKL 399
Query: 571 --WEGSLSGQRQGQPVFI---TKLEGYRSASA----SETLAAN-WPPTMQIVRLISQ 617
W G L Q + +P + TKL E L WP + I++LI Q
Sbjct: 400 LAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVNHGENLKTEQWPQKL-IMQLIPQ 455
Score = 54 (24.1 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 34/133 (25%), Positives = 53/133 (39%)
Query: 191 PKLTAIYNAAKRNPRAADPPVDNSKNPHFLV---LISENFMEARAALSRPGVANLAPNQN 247
P A +AA P+A P + P L + ++N +EA A + G+ N
Sbjct: 251 PASAATLSAAP--PQALPPVPPQYQVPGNLSAAQVAAQNAVEA-AKSQKAGLGPRFSPIN 307
Query: 248 PVKM---DIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTF 304
P++ + P S PAP P G +PP + + P+ V P V + P
Sbjct: 308 PLQQAAPGVGPPFS-QAPAPPLAPVPPGAPKPPPA--SQPSLVSTVAPGPVLA---APAQ 361
Query: 305 PHIPSVPRPASQG 317
P PS+ + G
Sbjct: 362 PGAPSLAGTVTPG 374
Score = 47 (21.6 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 36/140 (25%), Positives = 55/140 (39%)
Query: 131 VAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSF-VQCSVSLSVICPKQ 189
++A+ P LP PV PQ Q N + A+ +A AKS S I P Q
Sbjct: 257 LSAAPPQALP-PV-PPQYQV----PGNLSAAQVAAQNAVEAAKSQKAGLGPRFSPINPLQ 310
Query: 190 --LPKLTAIYNAAKRNPRAADPP----VDNSKNPHFLVLISENFMEARAALSRPGVANLA 243
P + ++ A P A PP + P + ++ AA ++PG +LA
Sbjct: 311 QAAPGVGPPFSQAPAPPLAPVPPGAPKPPPASQPSLVSTVAPG--PVLAAPAQPGAPSLA 368
Query: 244 PNQNPVKMDIAPVTSVTGPA 263
P ++ + GPA
Sbjct: 369 GTVTPGGVNGPSAAQLGGPA 388
Score = 46 (21.3 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 489 GNHSGGQMV-QNGISMNQNMMSGLGP 513
GN S Q+ QN + ++ +GLGP
Sbjct: 276 GNLSAAQVAAQNAVEAAKSQKAGLGP 301
Score = 42 (19.8 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 16/49 (32%), Positives = 19/49 (38%)
Query: 453 TSAPSN-LSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQM-VQN 499
T AP L+ + P GT+ G G S G GGQ V N
Sbjct: 349 TVAPGPVLAAPAQPGAPSLAGTVTPGGVNGPSAAQLGGPALGGQQSVSN 397
>UNIPROTKB|A2VE44 [details] [associations]
symbol:MED25 "Mediator of RNA polymerase II transcription
subunit 25" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 KO:K15168 InterPro:IPR021419 Pfam:PF11265
EMBL:BC133565 IPI:IPI00842024 RefSeq:NP_001075914.1
UniGene:Bt.12647 STRING:A2VE44 PRIDE:A2VE44 GeneID:533865
KEGG:bta:533865 CTD:81857 eggNOG:NOG79607 HOGENOM:HOG000113538
HOVERGEN:HBG108127 InParanoid:A2VE44 OrthoDB:EOG41JZC5
NextBio:20876176 InterPro:IPR021394 InterPro:IPR021406
InterPro:IPR021397 Pfam:PF11232 Pfam:PF11244 Pfam:PF11235
Uniprot:A2VE44
Length = 746
Score = 153 (58.9 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 47/143 (32%), Positives = 68/143 (47%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTHG 60
++ +EGTA +GPY++ + YL I F + G + + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGT--QYSLVVFNTVD 75
Query: 61 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQ 119
VQ T F+ WL I F GGG + IAEGLS AL +F + + +
Sbjct: 76 CAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFD---DFKKMR 132
Query: 120 QNVDGQRH--CILVAASNPHPLP 140
+ + GQ H C+L+ S P+ LP
Sbjct: 133 EQI-GQTHRVCLLICNSPPYLLP 154
Score = 97 (39.2 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 60/234 (25%), Positives = 88/234 (37%)
Query: 169 ETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNP--RAADPPVDNSKNPHFLVLISEN 226
ET+ + + + S++ P++LP L ++ A PP D S++P +VL+
Sbjct: 167 ETLVQKIGERGIYFSIVSPRKLPALRLLFEKAAPPAMLEPLQPPADVSQDPRHMVLVRGL 226
Query: 227 FMEARAALSRPGVANLAPNQNPVKMD-IAPVTSVTGPAPTS-IPSVNGINRPPISVGNVP 284
+ S PG L P Q PV + AP + AP +P V + P GN+
Sbjct: 227 VLPVGGG-SAPGP--LQPKQ-PVPLPPAAPAGATLSTAPQQPLPPVPQQYQVP---GNLS 279
Query: 285 TATVKVEPSTVTSMVN-----GPTFPHI-------PSVPRPASQGVXXXXXXXXXXXXXE 332
A V + + V + N GP F I P V P SQ
Sbjct: 280 AAQVAAQ-NAVEAAKNQKAGLGPRFSPINPLQQATPGVGPPYSQTQATQLPPGPPGAPKP 338
Query: 333 MITSGDS-VPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGG 385
S S V V P G++ P +P AP+ A +S A GG
Sbjct: 339 PPASQPSLVSTVAP-GPGLAPPAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGG 391
Score = 62 (26.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 32/117 (27%), Positives = 47/117 (40%)
Query: 513 PSGVSSGTGTMIPTPGMSQQAQSGMQPLS--VNNNTAVNMQLSQQTSSALHSSQSKYVKV 570
P+ S T+ P PG++ AQ G ++ V +Q + AL QS K+
Sbjct: 340 PASQPSLVSTVAPGPGLAPPAQPGAPSMAGTVAPGGVSGPSPAQLGAPALGGQQSVSNKL 399
Query: 571 --WEGSLSGQRQGQPVFI---TKLEGYRSASA----SETLAAN-WPPTMQIVRLISQ 617
W G L Q + +P + TKL E L WP + I++LI Q
Sbjct: 400 LAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVNHGENLKTEQWPQKL-IMQLIPQ 455
Score = 52 (23.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 489 GNHSGGQMV-QNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMS---QQAQSGMQP 539
GN S Q+ QN + +N +GLGP S TPG+ Q Q+ P
Sbjct: 276 GNLSAAQVAAQNAVEAAKNQKAGLGPR-FSPINPLQQATPGVGPPYSQTQATQLP 329
Score = 40 (19.1 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 442 QVPQNSG-LNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQ 482
Q P G + + PS P QP GT+ A+ GQ
Sbjct: 562 QAPPGLGPILEDQARPSQNLLQLRPPQPQPQGTVGASAAAGQ 603
Score = 38 (18.4 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 513 PSGVSSGTGTMIPTPGMSQQAQ 534
P+G + T P P + QQ Q
Sbjct: 252 PAGATLSTAPQQPLPPVPQQYQ 273
>UNIPROTKB|Q71SY5 [details] [associations]
symbol:MED25 "Mediator of RNA polymerase II transcription
subunit 25" species:9606 "Homo sapiens" [GO:0042974 "retinoic acid
receptor binding" evidence=IPI] [GO:0046965 "retinoid X receptor
binding" evidence=IPI] [GO:0035563 "positive regulation of
chromatin binding" evidence=IMP] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:2001178 "positive regulation of mediator complex assembly"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048147 "negative regulation of
fibroblast proliferation" evidence=IMP] [GO:0071158 "positive
regulation of cell cycle arrest" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 Reactome:REACT_111045
GO:GO:0005654 GO:GO:0071158 GO:GO:0045944 GO:GO:0000122
EMBL:CH471177 GO:GO:0048147 GO:GO:0006367 EMBL:AC006942 KO:K15168
InterPro:IPR021419 Pfam:PF11265 CTD:81857 eggNOG:NOG79607
HOVERGEN:HBG108127 InterPro:IPR021394 InterPro:IPR021406
InterPro:IPR021397 Pfam:PF11232 Pfam:PF11244 Pfam:PF11235
EMBL:AF261072 EMBL:AJ617479 EMBL:AY533507 EMBL:AL136746
EMBL:AK289460 EMBL:BC024312 EMBL:BC065297 EMBL:AF283769
IPI:IPI00163419 IPI:IPI00418271 IPI:IPI00479592 IPI:IPI00867552
IPI:IPI00867722 RefSeq:NP_112235.2 UniGene:Hs.656639 PDB:2KY6
PDB:2L23 PDB:2L6U PDB:2XNF PDBsum:2KY6 PDBsum:2L23 PDBsum:2L6U
PDBsum:2XNF ProteinModelPortal:Q71SY5 SMR:Q71SY5 DIP:DIP-31454N
IntAct:Q71SY5 MINT:MINT-5209896 STRING:Q71SY5 PhosphoSite:Q71SY5
DMDM:158706143 PaxDb:Q71SY5 PRIDE:Q71SY5 DNASU:81857
Ensembl:ENST00000312865 GeneID:81857 KEGG:hsa:81857 UCSC:uc002ppw.2
GeneCards:GC19P050321 H-InvDB:HIX0015345 HGNC:HGNC:28845 MIM:605589
MIM:610197 neXtProt:NX_Q71SY5 Orphanet:101101 PharmGKB:PA134984839
ChiTaRS:MED25 EvolutionaryTrace:Q71SY5 GenomeRNAi:81857
NextBio:72183 ArrayExpress:Q71SY5 Bgee:Q71SY5 CleanEx:HS_MED25
Genevestigator:Q71SY5 GO:GO:0035563 GO:GO:2001178 Uniprot:Q71SY5
Length = 747
Score = 153 (58.9 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 47/143 (32%), Positives = 68/143 (47%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTHG 60
++ +EGTA +GPY++ + YL I F + G + + SLV FNT
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGT--QYSLVVFNTVD 75
Query: 61 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQ 119
VQ T F+ WL I F GGG + IAEGLS AL +F + + +
Sbjct: 76 CAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFD---DFKKMR 132
Query: 120 QNVDGQRH--CILVAASNPHPLP 140
+ + GQ H C+L+ S P+ LP
Sbjct: 133 EQI-GQTHRVCLLICNSPPYLLP 154
Score = 81 (33.6 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 39/159 (24%), Positives = 67/159 (42%)
Query: 169 ETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNP--RAADPPVDNSKNPHFLVLISEN 226
E + + + + S++ P++LP L ++ A PP D S++P +VL+
Sbjct: 167 ENLVQQIGERGIHFSIVSPRKLPALRLLFEKAAPPALLEPLQPPTDVSQDPRHMVLVRGL 226
Query: 227 FMEARAALSRPGVANLAPNQNPVKMD-IAPVTSVTGPAPTS-IPSVNGINRPPISVGNVP 284
+ S PG ++ PV + AP + AP +P V + P GN+
Sbjct: 227 VLPVGGG-SAPGPLQ---SKQPVPLPPAAPSGATLSAAPQQPLPPVPPQYQVP---GNLS 279
Query: 285 TATVKVEPSTVTSMVN-----GPTFPHIPSVPRPASQGV 318
A V + + V + N GP F I + + A+ GV
Sbjct: 280 AAQVAAQ-NAVEAAKNQKAGLGPRFSPITPLQQ-AAPGV 316
Score = 51 (23.0 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 489 GNHSGGQMV-QNGISMNQNMMSGLGP 513
GN S Q+ QN + +N +GLGP
Sbjct: 276 GNLSAAQVAAQNAVEAAKNQKAGLGP 301
Score = 50 (22.7 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 30/124 (24%), Positives = 47/124 (37%)
Query: 195 AIYNAAKRNPRAADPP-VDNSKNPHFLVLISENFMEA----RAALSRPGVANLAPNQNPV 249
A +AA + P PP N + ++N +EA +A L P + + P Q
Sbjct: 255 ATLSAAPQQPLPPVPPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLG-PRFSPITPLQQAA 313
Query: 250 KMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPS 309
+ P S PAP P G +PP + + P+ V P + + P P +
Sbjct: 314 P-GVGPPFS-QAPAPQLPPGPPGAPKPPPA--SQPSLVSTVAPGSGLAPTAQPGAPSMAG 369
Query: 310 VPRP 313
P
Sbjct: 370 TVAP 373
Score = 47 (21.6 bits), Expect = 7.9e-07, Sum P(3) = 7.9e-07
Identities = 31/141 (21%), Positives = 45/141 (31%)
Query: 340 VPEVKPLVSGMSQ-PLRPMAPAAANVNILNNLSQARQVMNNA---ALTGGTSIGLQSMGQ 395
+P P + +S P +P+ P + NLS A+ NA A +G +
Sbjct: 247 LPPAAPSGATLSAAPQQPLPPVPPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLGPRFSPI 306
Query: 396 TPM---AMHMSNMISSGMASSVPTSQPVFSSAQXXXXXXXXXXXXXXXXQVPQ-NSGLNS 451
TP+ A + S A +P P P G S
Sbjct: 307 TPLQQAAPGVGPPFSQAPAPQLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPS 366
Query: 452 F--TSAPSNLSGNSNPSISQP 470
T AP +SG S + P
Sbjct: 367 MAGTVAPGGVSGPSPAQLGAP 387
Score = 46 (21.3 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 132 AASNPHPLPTPVYRPQ 147
AAS P P P P+ RPQ
Sbjct: 624 AASGPPP-PGPILRPQ 638
Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 337 GDSVPEVKPLVSGMSQPLRPMAPAAANVN 365
G S P PL S PL P AP+ A ++
Sbjct: 232 GGSAPG--PLQSKQPVPLPPAAPSGATLS 258
Score = 40 (19.1 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 505 QNMMSGLGPSGVSSGTGTMIPTPGMSQQ---AQSGMQP 539
Q + G +G GT P PG Q A SG P
Sbjct: 593 QGTVGASGATGQPQPQGTAQPPPGAPQGPPGAASGPPP 630
>ZFIN|ZDB-GENE-040426-2850 [details] [associations]
symbol:med25 "mediator of RNA polymerase II
transcription, subunit 25 homolog (yeast)" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND] [GO:0060021
"palate development" evidence=IMP] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002035 PROSITE:PS50234
ZFIN:ZDB-GENE-040426-2850 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0060021 KO:K15168 InterPro:IPR021419 Pfam:PF11265 CTD:81857
eggNOG:NOG79607 HOGENOM:HOG000113538 HOVERGEN:HBG108127
OrthoDB:EOG41JZC5 InterPro:IPR021394 InterPro:IPR021397
Pfam:PF11232 Pfam:PF11235 EMBL:BC058057 IPI:IPI00496486
RefSeq:NP_999931.1 UniGene:Dr.67653 ProteinModelPortal:Q6PEH8
STRING:Q6PEH8 GeneID:406793 KEGG:dre:406793 InParanoid:Q6PEH8
NextBio:20818303 ArrayExpress:Q6PEH8 Uniprot:Q6PEH8
Length = 701
Score = 178 (67.7 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 75/281 (26%), Positives = 130/281 (46%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTHG 60
++ +EGTA +GPY++S+ ++Y+ I F + G + + LV FNT
Sbjct: 15 VVFVIEGTANLGPYFESLRNNYILPTIEYFNGGPPAETDFGGDYGGT--QYGLVVFNTVD 72
Query: 61 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQ 119
VQ T F+ W+ +I F GGG + IAEGLS AL +F + + +
Sbjct: 73 CAPESYVQCHAPTSSAFEFVSWIDSIQFMGGGAESCSLIAEGLSVALQLFD---DFKKMR 129
Query: 120 QNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQ 177
+ + GQ H C+L+ S P+ LP E+ + + + A+++ +
Sbjct: 130 EQI-GQTHKVCVLLCNSPPYLLPAV---------------ESVSYTGCT-ADSLVQIIRD 172
Query: 178 CSVSLSVICPKQLPKLTAIYNAAKRN---PRAADPPVDNSKNPHFLVLISENFME-ARAA 233
+ SVI P++LP L +++ A P ++ P D S++P +VL+ + A
Sbjct: 173 RGIHFSVIAPRKLPALRSLFERASSVAGLPESSHP--DYSQDPFHMVLVRGIALPVAPGG 230
Query: 234 LSRP-GVANLAPNQN-PVKMD-IAPVTSVTGPAPTSIPSVN 271
S P + + P Q+ PV + + PV S T P + +V+
Sbjct: 231 GSVPVSLKPVLPPQSLPVNQNPLVPVAS-TAPQMNTFQNVS 270
Score = 47 (21.6 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 20/69 (28%), Positives = 28/69 (40%)
Query: 345 PLVSG-MSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPM--AMH 401
P+ G + Q LR A A N + QV A GG + LQ+ G P ++
Sbjct: 568 PVTHGNVPQQLR--AAATGNQQAPVTGAPPNQVQGQAQAPGGGMLRLQNPGANPQLRSLL 625
Query: 402 MSNMISSGM 410
+S GM
Sbjct: 626 LSQQPQGGM 634
Score = 45 (20.9 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 268 PSVNGINRPP----ISVGNVP 284
P+ N +NRPP ++ GNVP
Sbjct: 555 PNQNFLNRPPGPIPVTHGNVP 575
Score = 43 (20.2 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 469 QPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGT-GTMIPTP 527
QP G +QG M M GG +Q Q GP V +G G + P
Sbjct: 629 QPQGGMQGMQGMHPIQQMVHAAPGGGAQMQP-----QWRQPHQGPLMVPTGPRGPVTQNP 683
Query: 528 GM 529
GM
Sbjct: 684 GM 685
Score = 41 (19.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 21/89 (23%), Positives = 33/89 (37%)
Query: 456 PSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQ-NGISMNQNMMSGLGPS 514
P + N N +++P G + + G + +G Q G NQ P
Sbjct: 550 PGQVQPNQN-FLNRPPGPIP--VTHGNVPQQLRAAATGNQQAPVTGAPPNQVQGQAQAPG 606
Query: 515 G-----VSSGTGTMIPTPGMSQQAQSGMQ 538
G + G + + +SQQ Q GMQ
Sbjct: 607 GGMLRLQNPGANPQLRSLLLSQQPQGGMQ 635
>DICTYBASE|DDB_G0286967 [details] [associations]
symbol:med25 "putative mediator complex subunit 25"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0286967 GenomeReviews:CM000153_GR eggNOG:NOG12793
EMBL:AAFI02000092 InterPro:IPR021419 Pfam:PF11265
RefSeq:XP_637454.1 ProteinModelPortal:Q54L49
EnsemblProtists:DDB0266953 GeneID:8625854 KEGG:ddi:DDB_G0286967
OMA:QLPTNQG Uniprot:Q54L49
Length = 1553
Score = 113 (44.8 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 37/134 (27%), Positives = 64/134 (47%)
Query: 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYC 63
KQ+I ++ +A M + +I +DYL+ + L ++ N LV F + Y
Sbjct: 146 KQIIFILDSSAMMAHSFPTIQNDYLDPLALY-----LKHESKNFNFTYGLVLFRDYPPYS 200
Query: 64 ACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDA-AIAEGLSEALMMFSVAPNGSQNQQNV 122
+ + TKD+ L ++T F GGGF+ AI+EG+ +AL + S + Q +
Sbjct: 201 DFIASSTPLTKDLKTILTLMATTKFNGGGFSTGGAISEGICKALRLASCS-------QTI 253
Query: 123 DGQRHCILVAASNP 136
+ IL+ +NP
Sbjct: 254 IHEECFILITNNNP 267
Score = 80 (33.2 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 569 KVWEGSLSGQRQGQPVFITKLEGYRSASASETLAA-NWPPTMQIVRLISQDHMNNKQYVG 627
KVW G L+ P F++ ++ E NWP T+QI ++ + K++
Sbjct: 1109 KVWSGYLAWGTDLSP-FVSLFAVCQNKMVMEASPCQNWPETLQITGFVNSELF--KEHSK 1165
Query: 628 KADFLVFRAM--------NQ-HGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIG 675
FL+F++ N+ + L +L + K +++LPS + + + ++ +L G
Sbjct: 1166 SMTFLMFQSQPSPNIPENNELNSLLKKLHDDKTLGIVELPSVSKTMFLMNQENKLFG 1222
Score = 68 (29.0 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 72/348 (20%), Positives = 129/348 (37%)
Query: 214 SKNPHFLVLISENFMEARAALSRPGVANLAPNQNP-VKMDIAP-VTSV-TGPAPTSIPSV 270
+ N + V+I+ N A +S G N + N N ++I P +T + + P T+IP
Sbjct: 380 NNNNNASVMITNN-----ATIS--GNVNNSNNINSNTNINIQPAITQIQSNPTGTTIP-- 430
Query: 271 NGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVXXXXXXXXXXXX 330
N + +PP+ P + ++P + S + P I S P +
Sbjct: 431 NQLPQPPL-----PPHPIIIQPHSAISNIQQPQMQQIGSPSTPLHNKINGIKYSN----- 480
Query: 331 XEMITSGDSVPEVKPLVS-GMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIG 389
+TS V P+ + G++ P P N N NNL+ NN +
Sbjct: 481 ---MTSPGIVNS--PITNNGLTSPGTPHNNKNNNNNSTNNLNNNNNNNNNNNNNNNNNNN 535
Query: 390 LQSMGQTPMAMHMSNMISSGMASSVPT----SQPVFSSAQXXXXXXXXXXXXXXXXQVPQ 445
+ +N +++ ++ S V +S Q + Q
Sbjct: 536 NNDNNNNNNNNNNNNNVNNNNINNSSNNNNGSDVVMASDQSPPPSVNQPTTSLLQQYITQ 595
Query: 446 NSGLNSFTSAP-SNLSGNSNPSISQPMGT-LQGGASMGQSVGMSQGNHSGGQMVQNGISM 503
N+ N+ + +N +G S+ SI+QP + Q + N++ M + S+
Sbjct: 596 NNNSNNINNNNINNNNGTSHHSINQPPPQPFVDNPVLSQQTN-NNNNNNNMPMPMSPHSL 654
Query: 504 NQNMMSGLGPSGVSSGTGTMIP----TPGMSQQAQSGMQ---PLSVNN 544
S + ++G +++P TP +S S Q LS NN
Sbjct: 655 TTVQKSNTPQNPFANGN-SILPNKPSTPDLSVSRASSAQLNRQLSSNN 701
Score = 56 (24.8 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 26/79 (32%), Positives = 35/79 (44%)
Query: 480 MGQSVGMSQGNHSGGQMVQNGISMNQNMMS-GLGPSGVSS--GTGTMIPTPGMSQQAQSG 536
+GQ VGM Q H Q+ Q + Q++ G+ P+ GT I P QQ Q
Sbjct: 858 IGQQVGMIQQPHQL-QIGQQPPTPQQHLAHIGMQPNTPQQQQNLGTGIQQPHTPQQHQH- 915
Query: 537 MQPLSVNNNTAVNMQLSQQ 555
QP + T N Q+ QQ
Sbjct: 916 QQPHTPQQLT--NQQIGQQ 932
Score = 55 (24.4 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 25/122 (20%), Positives = 51/122 (41%)
Query: 444 PQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISM 503
P N+ N+ S +NL+ N+N + + + + + N++ + N I+
Sbjct: 502 PHNNKNNNNNST-NNLNNNNNNNNNNNNNN-NNNNNNNDNNNNNNNNNNNNNVNNNNINN 559
Query: 504 NQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQ---LSQQTSSAL 560
+ N +G S V + P P ++Q S +Q NN + N+ ++ ++
Sbjct: 560 SSNNNNG---SDVVMASDQS-PPPSVNQPTTSLLQQYITQNNNSNNINNNNINNNNGTSH 615
Query: 561 HS 562
HS
Sbjct: 616 HS 617
Score = 45 (20.9 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 521 GTMIPTPGMSQQ--AQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYV 568
G PTP QQ A GMQP + + + QQ S+ Q +++
Sbjct: 939 GQQPPTPQQQQQHLAHIGMQPNTPQQQQNLGTGI-QQPSTPQQQLQQQHL 987
Score = 45 (20.9 bits), Expect = 8.5e-05, Sum P(4) = 8.5e-05
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 339 SVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNN 379
S P+ + + M QP P A N + QA Q+ N+
Sbjct: 1008 STPQAHQIPNHMQQPSTPQAHQIPNHMQQPSTPQAHQIPNH 1048
Score = 43 (20.2 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 363 NVNILNNLSQARQVMNNAALTGGT--SIGLQSMGQTPMAMHMSNMISSGMASSVPTSQP 419
N N NN + + + NNA ++G S + S + ++ + S+ +++P P
Sbjct: 376 NNNYNNNNNASVMITNNATISGNVNNSNNINSNTNINIQPAITQIQSNPTGTTIPNQLP 434
Score = 43 (20.2 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 339 SVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQ 372
S P+ + + M QP P P NI SQ
Sbjct: 1038 STPQAHQIPNHMQQPHTPQQPNTPQQNIKIQSSQ 1071
Score = 37 (18.1 bits), Expect = 7.5e-06, Sum P(4) = 7.5e-06
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 127 HCILVAASNPHPLPTPVYRPQMQNL 151
H I++ PH + + +PQMQ +
Sbjct: 441 HPIII---QPHSAISNIQQPQMQQI 462
Score = 37 (18.1 bits), Expect = 0.00049, Sum P(4) = 0.00049
Identities = 15/75 (20%), Positives = 24/75 (32%)
Query: 305 PHIPSVPRPASQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANV 364
P+ P + G+ +IT + + M QP P A N
Sbjct: 959 PNTPQQQQNLGTGIQQPSTPQQQLQQQHLITGIQQPSTPHQIPNHMQQPSTPQAHQIPNH 1018
Query: 365 NILNNLSQARQVMNN 379
+ QA Q+ N+
Sbjct: 1019 MQQPSTPQAHQIPNH 1033
>WB|WBGene00019435 [details] [associations]
symbol:K06A9.1 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA]
GeneTree:ENSGT00700000104174 EMBL:FO081100 UniGene:Cel.5442
GeneID:180494 KEGG:cel:CELE_K06A9.1 CTD:180494 PIR:T34434
RefSeq:NP_508292.1 ProteinModelPortal:Q8IFX6 PRIDE:Q8IFX6
EnsemblMetazoa:K06A9.1b UCSC:K06A9.1b WormBase:K06A9.1b
InParanoid:Q8IFX6 OMA:TITWATP NextBio:909622 ArrayExpress:Q8IFX6
Uniprot:Q8IFX6
Length = 2232
Score = 144 (55.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 75/341 (21%), Positives = 130/341 (38%)
Query: 243 APNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGP 302
+PN + +++G + + +V+G +S G+ T+ + ST T +
Sbjct: 534 SPNPSSSPASTGSTITISGSSSIIVSTVSGST---VS-GSTGTSQSTLASSTATPG-SSS 588
Query: 303 TFPHIPSVPRPASQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMAPAAA 362
T P S P+P+SQ S P + P A+
Sbjct: 589 TVPSSSS-PQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTAS 647
Query: 363 NV--NILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPV 420
+ + + S A +V + + + G+S+G QS +P +S +SGM S TS+P
Sbjct: 648 SPTGSTGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPS-TSGM--STLTSEPS 704
Query: 421 FSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNS-----NPSISQPMGTLQ 475
SS Q Q S L S TS + SG++ +PS S +G+ Q
Sbjct: 705 PSSTQSSGAQSTLTTPSPNPSQ--STSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQ 762
Query: 476 GGASMGQSVGMSQGNHSGG-QMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQ 534
G S S + G Q + +S + +++ S ++ G+ + P +
Sbjct: 763 GSTSPAASTTSGEMTSQGSTQTPGSSVSTSAAILTSTQQSVSTNSPGSTVTRPSTVSGST 822
Query: 535 SGMQPLSVNNNTAVNMQLSQQTSS-ALHSSQSKYVKVWEGS 574
S ++V + A S +SS A +SQ+ GS
Sbjct: 823 SSGSTVTVGSTEASTSGSSVASSSPAPSTSQNPNPSTSSGS 863
Score = 135 (52.6 bits), Expect = 0.00011, P = 0.00011
Identities = 91/384 (23%), Positives = 138/384 (35%)
Query: 245 NQNPVKMDIAPVTS-----VTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMV 299
N +P ++P TS + P+P+S S + N +T +E ST +
Sbjct: 681 NSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSLESSTSGATT 740
Query: 300 N-GPTFPHIPSVPRPASQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMA 358
+ G + S + +S G TSG+ + G S
Sbjct: 741 SSGSAGTTMTSPSQSSSVGSSQGSTSPAAST-----TSGEMTSQGSTQTPGSSVSTSAAI 795
Query: 359 PAAANVNILNNLSQARQVMNNAALTGGTSIGLQ-SMGQTPMAMHMSNMISSGMASSVPTS 417
+ ++ N S V + ++G TS G ++G T + S++ SS A S TS
Sbjct: 796 LTSTQQSVSTN-SPGSTVTRPSTVSGSTSSGSTVTVGSTEASTSGSSVASSSPAPS--TS 852
Query: 418 QPVFSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNS-NPSISQPMGTLQG 476
Q S ++S S S + L+ S +PS S +G+ QG
Sbjct: 853 QNPNPSTSSGSSMITQSPYPSQSTSPVESSTTPSPGSPGTTLTSTSPSPSQSTTIGSTQG 912
Query: 477 GASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSG 536
S G S + G S + S S T T+ T G S S
Sbjct: 913 STSPGISTTSEEMTSQGSTQTPGSTGSTVTQPSTVSDSTSSGSTVTVGSTEGSSSPIPST 972
Query: 537 MQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSG--QRQGQP-VFITKLEGYR 593
Q + N +T+ +S QT SSQS E S SG G P +T +
Sbjct: 973 SQ--NTNPSTSSGSSMSTQTPQ---SSQS--TSPVESSTSGATSSSGSPGTTLTSISP-- 1023
Query: 594 SASASETLAANWPPTMQIVRLISQ 617
S S S T+ ++ T +V ISQ
Sbjct: 1024 SPSPSSTIGSSQGSTSPVVSTISQ 1047
>FB|FBgn0038760 [details] [associations]
symbol:MED25 "Mediator complex subunit 25" species:7227
"Drosophila melanogaster" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=ISS] [GO:0016592
"mediator complex" evidence=ISS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISS]
[GO:0007399 "nervous system development" evidence=IMP] [GO:0002805
"regulation of antimicrobial peptide biosynthetic process"
evidence=IMP] EMBL:AE014297 GO:GO:0007399 GO:GO:0006367
GO:GO:0002805 GO:GO:0016592 GO:GO:0001104 KO:K15168
InterPro:IPR021419 Pfam:PF11265 CTD:81857 eggNOG:NOG79607
InterPro:IPR021394 InterPro:IPR021406 Pfam:PF11232 Pfam:PF11244
EMBL:AY069370 RefSeq:NP_650854.1 UniGene:Dm.1258
ProteinModelPortal:Q9VDR1 SMR:Q9VDR1 STRING:Q9VDR1 PaxDb:Q9VDR1
PRIDE:Q9VDR1 EnsemblMetazoa:FBtr0083825 GeneID:42385
KEGG:dme:Dmel_CG12254 FlyBase:FBgn0038760
GeneTree:ENSGT00520000055653 InParanoid:Q9VDR1 OMA:HCILICN
OrthoDB:EOG4R7SRR PhylomeDB:Q9VDR1 GenomeRNAi:42385 NextBio:828534
Bgee:Q9VDR1 Uniprot:Q9VDR1
Length = 863
Score = 112 (44.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 45/200 (22%), Positives = 82/200 (41%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCFC---VNELAGQTSASNVEL-SLVTFNTHGS 61
++ +EG+A G Y + ++Y+ + F ++E + L +V + T +
Sbjct: 11 VVFVIEGSAINGAYINELKTNYILPTLEHFTTGSIDEREYLIAERFATLYGIVVYRTAAN 70
Query: 62 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQQ 120
+ G + + +P GGG A +AEG + A F Q
Sbjct: 71 LLEPVCSTYGPFLQPQKVMETIERLPLVGGGMESCAHMAEGFAAAHGCFDDISERRQLLD 130
Query: 121 NVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSV 180
QRHCIL+ S P+ +PT E+ + +S E +A F + +
Sbjct: 131 QTSVQRHCILICNSPPYQMPT------------TESWKYPGKS----CEQLAALFNERKI 174
Query: 181 SLSVICPKQLPKLTAIYNAA 200
+LS+I P+++P L ++ A
Sbjct: 175 NLSIIAPRKMPVLFKLFMKA 194
Score = 74 (31.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 40/160 (25%), Positives = 61/160 (38%)
Query: 482 QSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQ--P 539
Q + Q GQ Q +N N + + P+ S G M P QQ Q G Q P
Sbjct: 449 QQLAQQQQQQQQGQQQQQ---VNPNAGNNMMPA---SNAGNM-SNP-QQQQQQVGQQSNP 500
Query: 540 LSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFI--TKLEGYRSASA 597
N SQQ ++L V W +Q P + T +
Sbjct: 501 QQQGNPQQQQQGNSQQEQASLREKIWTGVLEWSEKPKSDQQKIPHTLQCTVCTNIKDGEP 560
Query: 598 SETLAANWPPTMQIVRLISQDHMNN--KQYVGKADFLVFR 635
E A NWPP + +++L+ + + N Q++ + +VFR
Sbjct: 561 -EIKAENWPPKL-LMQLMPKHLVGNIGGQFLKDSKMVVFR 598
Score = 73 (30.8 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 30/84 (35%), Positives = 37/84 (44%)
Query: 476 GGASMGQSVGMSQGNHSGGQMVQNGISMN----QNMMSGLGPSGVSSGTGTMIPTPGMSQ 531
GG G G G G M QN + MN Q M G+G GV G G +P P + Q
Sbjct: 727 GGGGPGGGPGPGPG---GMPMQQNQMQMNMMQQQRMPLGVGV-GVGVGPGG-VPNPNLQQ 781
Query: 532 QAQSGMQPLSVNNNTAVNMQLSQQ 555
Q Q + P N A+ Q +QQ
Sbjct: 782 QLQQ-VAP----NVAAMQQQQAQQ 800
>POMBASE|SPAPB1E7.04c [details] [associations]
symbol:SPAPB1E7.04c "chitinase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000324 "fungal-type
vacuole" evidence=IDA] [GO:0000920 "cytokinetic cell separation"
evidence=ISO] [GO:0004568 "chitinase activity" evidence=ISO]
[GO:0005576 "extracellular region" evidence=IEA] [GO:0009277
"fungal-type cell wall" evidence=ISO] [GO:0009986 "cell surface"
evidence=IC] [GO:0034232 "ascospore wall chitin catabolic process"
evidence=IC] [GO:0046379 "extracellular polysaccharide metabolic
process" evidence=IC] InterPro:IPR013781 PomBase:SPAPB1E7.04c
GO:GO:0005576 GO:GO:0009986 EMBL:CU329670 GO:GO:0043169
Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445 GO:GO:0000920
eggNOG:NOG12793 GO:GO:0009277 GO:GO:0046379 GO:GO:0000324 CAZy:GH18
GO:GO:0004568 GO:GO:0034232 KO:K01183 OrthoDB:EOG40KC7X
RefSeq:NP_594130.1 HSSP:P0A3R9 ProteinModelPortal:Q9C105
EnsemblFungi:SPAPB1E7.04c.1 GeneID:2543683 KEGG:spo:SPAPB1E7.04c
OMA:SPGHTIT NextBio:20804689 Uniprot:Q9C105
Length = 1236
Score = 137 (53.3 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 67/316 (21%), Positives = 130/316 (41%)
Query: 257 TSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQ 316
T++T TS+ + + ++ V T+T+ + S TS++ ++ +V +PAS
Sbjct: 387 TTITASGATSVTTTTKTDFDTVTTTIVSTSTL-ISASDSTSII---VSSYVSTVTQPAST 442
Query: 317 GVXXXXXXXXXXXXXE----MITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQ 372
V + + +S SVP + S P+ + A++ + L+ S+
Sbjct: 443 RVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSE 502
Query: 373 ARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQXXXXXXX 432
+++ L+G ++I S TP + +S+ ++S ++SS +S P SS+
Sbjct: 503 VVSEVSSTLLSGSSAIPSTS-SSTPSSSIISSPMTSVLSSS--SSIPT-SSSSDFSSSIT 558
Query: 433 XXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHS 492
+P ++F+S S LS S S P T +S S S + S
Sbjct: 559 TISSGISSSSIP-----STFSSVSSILSS----STSSPSSTSLSISSSSTSSTFSSASTS 609
Query: 493 GGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQL 552
+ + IS + ++S PS S + G S S + + ++++ +
Sbjct: 610 SPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSS 669
Query: 553 SQQTSSALHSSQSKYV 568
+SS L SS S +
Sbjct: 670 VIPSSSTLVSSSSSLI 685
>POMBASE|SPBC215.13 [details] [associations]
symbol:SPBC215.13 "sequence orphan" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009986 "cell surface"
evidence=NAS] [GO:0031225 "anchored to membrane" evidence=IEA]
PomBase:SPBC215.13 GO:GO:0005783 GO:GO:0005886 GO:GO:0009986
GO:GO:0031225 EMBL:CU329671 PIR:T39903 RefSeq:NP_596690.1
ProteinModelPortal:O94317 EnsemblFungi:SPBC215.13.1 GeneID:2540669
KEGG:spo:SPBC215.13 eggNOG:opiNOG43420 OMA:NPTDVTS NextBio:20801793
Uniprot:O94317
Length = 534
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 78/372 (20%), Positives = 135/372 (36%)
Query: 235 SRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVK---VE 291
S P + + + + +PV+S + PA + +PS P S P++T ++
Sbjct: 82 SEPSIFSESATPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSE-YTPSSTESSSLLD 140
Query: 292 PSTVTSMVNGPTFPHIPSVPRPASQGVXXXXXXXXXXXXXEMITS-GDSVPEVKPLVSGM 350
PS+V+S + P SV S + +S S P V S
Sbjct: 141 PSSVSSAI----LPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSST 196
Query: 351 SQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGM 410
P + +++ ++ + +S + ++++ T TS L S P S+ SS +
Sbjct: 197 FSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTL-TSSSL-STSSIPSTSSSSSSTSSSL 254
Query: 411 ASSVPTSQPVFSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSG--NSNPSIS 468
+SS +S SS+ S +S +S+P++ S +S+ S S
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314
Query: 469 QPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPG 528
+ +SM S S S + + S + S SS T + +
Sbjct: 315 SSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS-------SSFSSTTSSSKSSSS 367
Query: 529 MSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITK 588
S S S + T+ + S+ SS+ HSS K S S F
Sbjct: 368 FSSTVSSSSSTSS-STLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHN 426
Query: 589 LEGYRSASASET 600
RS+S S +
Sbjct: 427 STSSRSSSHSSS 438
>RGD|1305137 [details] [associations]
symbol:Med25 "mediator complex subunit 25" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0035563 "positive
regulation of chromatin binding" evidence=ISO] [GO:0042974
"retinoic acid receptor binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046965 "retinoid X receptor binding"
evidence=ISO] [GO:0048147 "negative regulation of fibroblast
proliferation" evidence=ISO] [GO:0071158 "positive regulation of
cell cycle arrest" evidence=ISO] [GO:2001178 "positive regulation
of mediator complex assembly" evidence=ISO] RGD:1305137
InterPro:IPR021419 Pfam:PF11265 InterPro:IPR021394
InterPro:IPR021406 InterPro:IPR021397 Pfam:PF11232 Pfam:PF11244
Pfam:PF11235 IPI:IPI00950269 Ensembl:ENSRNOT00000064339
UCSC:RGD:1305137 ArrayExpress:D3ZTD4 Uniprot:D3ZTD4
Length = 618
Score = 128 (50.1 bits), Expect = 0.00014, P = 0.00014
Identities = 82/319 (25%), Positives = 132/319 (41%)
Query: 90 GGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRH--CILVAASNPHPLPTPVYRPQ 147
GGG + + IAEGLS AL +F + + ++ + GQ H C+L+ S P+ LP
Sbjct: 3 GGGESCSLIAEGLSTALQLFD---DFKKMREQI-GQTHRVCLLICNSPPYLLPAV----- 53
Query: 148 MQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNP--R 205
E+ S + E++ + + + S++ P++LP L ++ A
Sbjct: 54 ----------ESTTYSGCT-TESLVQKIGERGIHFSIVSPRKLPALRLLFEKAAPPALLE 102
Query: 206 AADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVT-GPAP 264
PP D S++P +VL+ + + S PG L P Q V + AP ++ T AP
Sbjct: 103 PLQPPADVSQDPRHMVLVRGLVLPVGGS-SAPGP--LQPKQ-AVPLPPAPTSAATLSAAP 158
Query: 265 T-SIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVN-----GPTFPHIPSVPRPASQGV 318
++P V + P GN+ A V + + V + N GP F I + + AS GV
Sbjct: 159 QQTLPPVPPQYQVP---GNLSAAQVAAQ-NAVEAAKNQKAGLGPRFSPINPLQQAAS-GV 213
Query: 319 XXXXXXXXXXXXXEMITSGDSVPEV-KP-LVS------GMSQPLRPMAPAAANVNILNNL 370
P +P LVS G++ P +P AP+ A +
Sbjct: 214 GPPFSQAPAPPLAPGPPGAPKPPPASQPSLVSTVAPGPGLAAPAQPGAPSMAGTVTPGGV 273
Query: 371 SQARQV-MNNAALTGGTSI 388
S + AL G S+
Sbjct: 274 SGPSPAQLGGPALGGQQSV 292
>ZFIN|ZDB-GENE-080618-2 [details] [associations]
symbol:prdm1b "PR domain containing 1b, with ZNF
domain" species:7955 "Danio rerio" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0018149 "peptide cross-linking" evidence=IEA]
InterPro:IPR003302 Pfam:PF02389 ZFIN:ZDB-GENE-080618-2
GO:GO:0005737 GeneTree:ENSGT00700000104630 GO:GO:0018149
EMBL:CU693379 IPI:IPI00961681 Ensembl:ENSDART00000109480
OMA:TISKESH Bgee:F1Q7Q5 Uniprot:F1Q7Q5
Length = 538
Score = 127 (49.8 bits), Expect = 0.00014, P = 0.00014
Identities = 100/488 (20%), Positives = 201/488 (41%)
Query: 150 NLDQNENNEAQA---ESRLSDAETVAKSFVQCSVSLSVICPKQLPKLT---AIYNAAKRN 203
+L+ E + A + ES +S E+ S + S S+ PK P + + +++ +N
Sbjct: 7 HLEHGEYSNAASLTQESYISRPESTDSSIHESS---SLFIPKS-PVFSIPESSFSSDPQN 62
Query: 204 PRAADPPVDNSKNPHFLVL-ISENFMEARAALSRPGVANLAPNQNP-VKMDIAPV---TS 258
P A+ P V +S +P I E+ + +S + P + P TS
Sbjct: 63 PTASIPQVSSSSDPQLSTSSIPESSFSSGPQISTSSIPQSTSTSVPQISTSSIPQSASTS 122
Query: 259 VTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGV 318
V+ + +S+P + ++ P I + +VP ++ +P TS++ P F S P+ + +
Sbjct: 123 VSQISTSSVPDSSSVSVPQIFISSVPQSSSSSDPQISTSLI--PEFSS-SSDPQIFTSSI 179
Query: 319 XXXXXXXXXXXXXEMI--TSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQV 376
I +S SVP++ S + Q P + +I S +
Sbjct: 180 LQSTSTSVPQISTSSIPQSSSSSVPQIS--TSSIHQSSPTSVPQMSTSSIPQGSSSSVPQ 237
Query: 377 MNNAALTGGTS-----IGLQSMGQT-PMAMHM--SNMISSGMASSVP----TSQPVFSSA 424
++ +++ +S I S+ Q+ P ++ ++ I G +SSVP +S P SS
Sbjct: 238 ISTSSIPQSSSSSVPQISTSSIPQSSPTSVPQISTSSIPQGSSSSVPQISISSIPQ-SST 296
Query: 425 QXXXXXXXXXXXXXXXXQVPQNS------GLNSFTSAPSNLSGNSNPSISQPMGTLQGGA 478
+PQ+S NS ++ + S N+N + + P + A
Sbjct: 297 NSVPHSSTPLVHESSSSYIPQSSTSTMHDSFNSDSTMTQSFSTNTNSAFNLPEDSFSHPA 356
Query: 479 SMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQ 538
++ + +H+ V+N ++ N+++ S SS T + + +S + +
Sbjct: 357 D---TISY-EDSHTTSANVRNKSFIDSNVIN----SDPSSPTTDICESDHVSSKPYVIVS 408
Query: 539 PLSVNNNTAVN-MQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQP-----VFITKLEGY 592
++ N ++ ++ SS+ + V V + SG R+ P V I+K E +
Sbjct: 409 STLCSSRIKGNRIKTDRKPSSSNTNVSESDVTVHSTADSGSREETPPESSCVTISK-ESH 467
Query: 593 RSASASET 600
+A A+++
Sbjct: 468 ATAYATDS 475
>WB|WBGene00019273 [details] [associations]
symbol:H43E16.1 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] eggNOG:NOG12793
GeneTree:ENSGT00700000104630 EMBL:FO080627 RefSeq:NP_495358.1
ProteinModelPortal:Q9N5K0 PaxDb:Q9N5K0 EnsemblMetazoa:H43E16.1
GeneID:174101 KEGG:cel:CELE_H43E16.1 UCSC:H43E16.1 CTD:174101
WormBase:H43E16.1 InParanoid:Q9N5K0 OMA:NVVHSAG NextBio:882515
Uniprot:Q9N5K0
Length = 1203
Score = 128 (50.1 bits), Expect = 0.00032, P = 0.00032
Identities = 67/345 (19%), Positives = 120/345 (34%)
Query: 243 APNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTAT-VKVEPSTVTSMVN- 300
AP+ + M +P S G TS P V + + G+ + T V V+ + V+S +
Sbjct: 631 APSSS-TSMGPSPSQSTAGSTMTSAPPVTSSSSA--NTGSTSSGTTVSVQTTQVSSTTSP 687
Query: 301 -GPTFPHIPSVPRPA--SQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRP- 356
+ + S +P+ S + + S S S +QP+
Sbjct: 688 VASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRSTASQG---SSSAQPIASS 744
Query: 357 --MAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSV 414
M A + + S + A + G+++G +MG T ++ S M ++G S
Sbjct: 745 STMGSTAGSSSPQPTASSTSVPSSTGATSSGSTVGSSTMGSTQSSLPSSTMTNTGSTGST 804
Query: 415 PTSQPVFSSAQXXXXXXXXXXXXX-----XXXQVPQNSGLNSFTSAPSNLSGNSNPSISQ 469
T+Q SS Q + +S T SN + +
Sbjct: 805 VTNQLASSSTYGASSTEPIASSTANPGSSTSGQTAVTTQGSSSTQTNSNTGSTGSTVTNP 864
Query: 470 PMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGM 529
P+ + G+S Q + S N ++ + + P+ S+G+ P+
Sbjct: 865 PVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQGSSSTQTNPNTGSTGSTVTQPSAFS 924
Query: 530 SQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGS 574
S A S QP++ + S T ++ S S GS
Sbjct: 925 STSASSSTQPIASSTTANPGSSTSGPTIASTQGSSSTQTNSNTGS 969
>DICTYBASE|DDB_G0287399 [details] [associations]
symbol:DDB_G0287399 species:44689 "Dictyostelium
discoideum" [GO:0005576 "extracellular region" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0287399
GO:GO:0005576 EMBL:AAFI02000100 eggNOG:NOG12793 RefSeq:XP_637288.1
EnsemblProtists:DDB0187468 GeneID:8626120 KEGG:ddi:DDB_G0287399
OMA:ETINIFH Uniprot:Q54KD5
Length = 486
Score = 122 (48.0 bits), Expect = 0.00044, P = 0.00044
Identities = 52/189 (27%), Positives = 72/189 (38%)
Query: 380 AALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQXXXXXXXXXXXXXX 439
A L+ SI G P + S SG S +S + Q
Sbjct: 17 AVLSNAISIKNDG-GVNPFDNNNSGS-GSGSGSGGGSSSSGSGTGQSSGTVSSSGSASNN 74
Query: 440 XXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQM--V 497
Q+ +S +S+ S+ +S S G+ G AS G S S G+ SG
Sbjct: 75 TSSGSQSGNASSGSSSGSSSGSSSGSSSGSSSGSQSGNASSGSSSSGSSGSQSGNASSGT 134
Query: 498 QNGISMNQ-NMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQT 556
+G S + + SG SG SSGT T S+ +QSG ++ T + SQ
Sbjct: 135 SSGSSSSSGSSQSGNASSGPSSGT-TSSSGSSQSESSQSGNASSGPSSGTTSSSGSSQSE 193
Query: 557 SSALHSSQS 565
SS SSQS
Sbjct: 194 SSQSESSQS 202
>DICTYBASE|DDB_G0271670 [details] [associations]
symbol:DDB_G0271670 species:44689 "Dictyostelium
discoideum" [GO:0005576 "extracellular region" evidence=IEA]
dictyBase:DDB_G0271670 GO:GO:0005576 EMBL:AAFI02000006
ProtClustDB:CLSZ2431310 RefSeq:XP_645495.1
ProteinModelPortal:Q75JC9 EnsemblProtists:DDB0168484 GeneID:8618123
KEGG:ddi:DDB_G0271670 OMA:EITNEEP Uniprot:Q75JC9
Length = 374
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 46/244 (18%), Positives = 94/244 (38%)
Query: 361 AANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPV 420
A+ +NIL+ S + ++++ + +S S + + S+ SS +SS +S
Sbjct: 57 ASFLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 116
Query: 421 FSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASM 480
SS+ +S +S +S+ S+ S +S+ S S + +S
Sbjct: 117 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 176
Query: 481 GQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPL 540
S S + S + S + + S S SS + + + S + S
Sbjct: 177 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 236
Query: 541 SVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRSASASET 600
S +++++ + S +SS+ SS S S S + S+S+S +
Sbjct: 237 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 296
Query: 601 LAAN 604
+++
Sbjct: 297 SSSS 300
>CGD|CAL0006203 [details] [associations]
symbol:orf19.4906 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000082
"G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] CGD:CAL0006203
EMBL:AACQ01000001 RefSeq:XP_723588.1 GeneID:3634835
KEGG:cal:CaO19.4906 Uniprot:Q5APQ2
Length = 768
Score = 91 (37.1 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 62/346 (17%), Positives = 123/346 (35%)
Query: 146 PQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPR 205
P ++ Q + + + ++ S + T F S S P+ ++ +
Sbjct: 43 PSSSSIQQQQTSSLMSTNQNSFSTTTTSQFTSNSSPNSAQTFSSSPENSSSRMSTPTTSI 102
Query: 206 AADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPV-------TS 258
+ P S + S+ +++ + P+Q+P AP TS
Sbjct: 103 STQPASTTSIQQSQSLQTSQQSQQSQQSQQSQQSQQSQPSQSPTSTSQAPSSTMSDNNTS 162
Query: 259 VTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGV 318
P+ TS+ SV+ S + +++ S VT+ + + P + +S
Sbjct: 163 FVSPSDTSL-SVSATTTSSSSTSSSSSSSTP-STSDVTTSSSASSSPS-STTSSSSSTAF 219
Query: 319 XXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMN 378
T+ S+ + S S + A++ + ++ S + +
Sbjct: 220 SSSTTETSSSATSSSSTTSSSISSTQSNTSSSSNTSFSSSTTASS-SFSSSTSSSFSP-S 277
Query: 379 NAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSV-PTSQPVFSSAQXXXXXXXXXXXX 437
++ T +SI S T + SS +SSV P+S SS
Sbjct: 278 PSSTTSSSSISSTSSSFTTSS---DTSASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSS 334
Query: 438 XXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQS 483
+P +S ++S +++ S+ S +S+ S S T Q +S QS
Sbjct: 335 STTSSIPSSSEVSSTSTSASSSSSDSSTSTSSSSETDQSSSSTTQS 380
Score = 82 (33.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 40/135 (29%), Positives = 58/135 (42%)
Query: 445 QNSGLNSFTSAPSNL-SGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISM 503
QNS + F S SN SG SN S S+ +G GG + G S G G ++ +NG +
Sbjct: 531 QNSKMGWFKSIFSNSGSGTSNASNSKLLGGAVGGGAAGASGGAGAGGIFR-RLDRNGDDL 589
Query: 504 NQNMMSGLGPSGVSSG-TGTMIPTPGMSQQAQSGMQPLSVNNNT---AVNMQLSQQ---- 555
+ G G +G ++ T G++ Q NNNT A N ++
Sbjct: 590 ERQAGGGYGSTGRNNNDTDNDFVYRGVTNSNNLD-QIFRSNNNTSSAARNSTIADGSAGV 648
Query: 556 ---TSSALHSSQSKY 567
T+SA H+ S Y
Sbjct: 649 TSGTNSAKHTRMSSY 663
>UNIPROTKB|Q5APQ2 [details] [associations]
symbol:CaO19.4906 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] CGD:CAL0006203 EMBL:AACQ01000001
RefSeq:XP_723588.1 GeneID:3634835 KEGG:cal:CaO19.4906
Uniprot:Q5APQ2
Length = 768
Score = 91 (37.1 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 62/346 (17%), Positives = 123/346 (35%)
Query: 146 PQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPR 205
P ++ Q + + + ++ S + T F S S P+ ++ +
Sbjct: 43 PSSSSIQQQQTSSLMSTNQNSFSTTTTSQFTSNSSPNSAQTFSSSPENSSSRMSTPTTSI 102
Query: 206 AADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPV-------TS 258
+ P S + S+ +++ + P+Q+P AP TS
Sbjct: 103 STQPASTTSIQQSQSLQTSQQSQQSQQSQQSQQSQQSQPSQSPTSTSQAPSSTMSDNNTS 162
Query: 259 VTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGV 318
P+ TS+ SV+ S + +++ S VT+ + + P + +S
Sbjct: 163 FVSPSDTSL-SVSATTTSSSSTSSSSSSSTP-STSDVTTSSSASSSPS-STTSSSSSTAF 219
Query: 319 XXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMN 378
T+ S+ + S S + A++ + ++ S + +
Sbjct: 220 SSSTTETSSSATSSSSTTSSSISSTQSNTSSSSNTSFSSSTTASS-SFSSSTSSSFSP-S 277
Query: 379 NAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSV-PTSQPVFSSAQXXXXXXXXXXXX 437
++ T +SI S T + SS +SSV P+S SS
Sbjct: 278 PSSTTSSSSISSTSSSFTTSS---DTSASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSS 334
Query: 438 XXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQS 483
+P +S ++S +++ S+ S +S+ S S T Q +S QS
Sbjct: 335 STTSSIPSSSEVSSTSTSASSSSSDSSTSTSSSSETDQSSSSTTQS 380
Score = 82 (33.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 40/135 (29%), Positives = 58/135 (42%)
Query: 445 QNSGLNSFTSAPSNL-SGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISM 503
QNS + F S SN SG SN S S+ +G GG + G S G G ++ +NG +
Sbjct: 531 QNSKMGWFKSIFSNSGSGTSNASNSKLLGGAVGGGAAGASGGAGAGGIFR-RLDRNGDDL 589
Query: 504 NQNMMSGLGPSGVSSG-TGTMIPTPGMSQQAQSGMQPLSVNNNT---AVNMQLSQQ---- 555
+ G G +G ++ T G++ Q NNNT A N ++
Sbjct: 590 ERQAGGGYGSTGRNNNDTDNDFVYRGVTNSNNLD-QIFRSNNNTSSAARNSTIADGSAGV 648
Query: 556 ---TSSALHSSQSKY 567
T+SA H+ S Y
Sbjct: 649 TSGTNSAKHTRMSSY 663
>UNIPROTKB|F1RGR9 [details] [associations]
symbol:F1RGR9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016324 "apical plasma membrane" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] PANTHER:PTHR10006
GO:GO:0009986 GO:GO:0016324 InterPro:IPR000082 Pfam:PF01390
SMART:SM00200 PROSITE:PS50024 GeneTree:ENSGT00700000104548
InterPro:IPR023217 EMBL:CU179666 Ensembl:ENSSSCT00000007146
OMA:PVHNGTS Uniprot:F1RGR9
Length = 638
Score = 121 (47.7 bits), Expect = 0.00082, P = 0.00082
Identities = 69/284 (24%), Positives = 99/284 (34%)
Query: 265 TSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVXXXXXX 324
TS P+ NG + P + + PT T T + NG + P PA+ G
Sbjct: 21 TSSPTTNGTSSPATNGTSSPT-TSPASGLATTPVHNGTSSPTTNGTSSPATNGTSSPTTS 79
Query: 325 XXXXXXXEMITSGDSVPEVK----PLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNA 380
+ +G S P P +G S P A A + N S ++
Sbjct: 80 PASGLATTPVHNGTSSPTTNGTSSPATNGTSSPTTGPASGLATTPVHNGTSSPTTNGTSS 139
Query: 381 ALTGGTS---IGLQS-MGQTPMAMHMSNMISSGMASSVP--TSQPVFSSAQXXXXXXXXX 434
T GTS G S + TP+ S+ ++G +S TS P A
Sbjct: 140 PATNGTSSPTTGPASGLATTPVHNGTSSPTTNGTSSPATNGTSSPTTGPASGLATTPVHN 199
Query: 435 XXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGG 494
P +G TS+P+ +G S+P+ G G S + G S
Sbjct: 200 GTSS-----PTTNG----TSSPAT-NGTSSPTTGPASGLATTPVHNGTSSPTTNGTSSPA 249
Query: 495 QMVQNGISM-NQNMMSGLGPSGVSSGTGTMIPTPG-MSQQAQSG 536
NG S SGL + V +GT + PT S A +G
Sbjct: 250 T---NGTSSPTTGPASGLATTPVHNGTSS--PTTNDTSSPATNG 288
>WB|WBGene00019146 [details] [associations]
symbol:H02F09.3 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] eggNOG:NOG12793
GeneTree:ENSGT00700000104174 EMBL:FO080175 PIR:T33369
RefSeq:NP_508295.1 UniGene:Cel.27104 HSSP:P54865
ProteinModelPortal:O76602 PaxDb:O76602 EnsemblMetazoa:H02F09.3
GeneID:186667 KEGG:cel:CELE_H02F09.3 UCSC:H02F09.3 CTD:186667
WormBase:H02F09.3 InParanoid:O76602 OMA:STYLNTT NextBio:932590
Uniprot:O76602
Length = 1275
Score = 124 (48.7 bits), Expect = 0.00092, P = 0.00092
Identities = 88/441 (19%), Positives = 163/441 (36%)
Query: 144 YRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRN 203
+ P N D E++ ++ ++ + + K+FV S+SL+ + + Y A N
Sbjct: 153 FTPCQTNYDGIEDDIKNVQTAIN--KVITKTFVIVSLSLNST------DMNSRYGEAAHN 204
Query: 204 -PRAADPPVDNSKNPHFLVLISEN--FMEARAALSRPGVANLAPNQNPVKMDIAPVTSVT 260
P + N N + ++ + A + V + APN V + +P T VT
Sbjct: 205 IPTTPTEDISNKINNILNIGTTQTPPVTTSTMATTTANVTSAAPNTT-VTISTSPTTVVT 263
Query: 261 GPAPTSIPSVNGINRP------PISVGNVPTATVKVEPSTVTSMVNGP-TFPHIPS---- 309
P+ S + P P +V VPT V + + VTS + P T +PS
Sbjct: 264 VPSTAQTSSTTTVTVPTTTVTGPTTVVTVPTTVVTIPSTVVTSPITTPSTVVTVPSTVVT 323
Query: 310 VPRPA--SQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNIL 367
VP A ++T ++V P V+ + P + + V +
Sbjct: 324 VPSTAVTKPSTVVTAPSTVVTVPSTVVTKPNTVVTSSPTVA--TTPTTVVTTPSTVVTVP 381
Query: 368 NNL-SQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQX 426
+ + + V+ N + + ++ T M + + + S P++ ++
Sbjct: 382 STVVTVPTTVVTNPSTVVTAPSTVVTVPTTVMTSRSTVITTPTTGGSSPSTA---GTSLA 438
Query: 427 XXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGM 486
+P S S +S + +S + P T Q S ++G
Sbjct: 439 STAVTTETSIGSSSTPLPSQSTSLSMSSLSTYTPSSSTAGATSP-ATQQ---STKPTIGT 494
Query: 487 SQGNHSGGQMVQNGISMNQNMMSGLGPSG--VSSGTGTMIPTPGMSQQAQSGMQPLSVNN 544
S SG V G S ++ PSG V+ +G+ T G S QA + ++
Sbjct: 495 SMS--SGPTTVAPGASTESTVLQSSTPSGTTVTLPSGSSTATAGTSPQASTVTTVTDIS- 551
Query: 545 NTAVNMQLSQQTSSALHSSQS 565
T ++ QT+ + S++S
Sbjct: 552 -TVSGSTVTSQTAESSLSTES 571
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.127 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 833 687 0.00080 121 3 11 23 0.44 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 616 (65 KB)
Total size of DFA: 322 KB (2162 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 70.79u 0.11s 70.90t Elapsed: 00:00:05
Total cpu time: 70.80u 0.11s 70.91t Elapsed: 00:00:05
Start: Mon May 20 16:22:22 2013 End: Mon May 20 16:22:27 2013