BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003297
(833 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XYY2|MED25_ARATH Mediator of RNA polymerase II transcription subunit 25
OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1
Length = 836
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/693 (66%), Positives = 550/693 (79%), Gaps = 27/693 (3%)
Query: 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTS-ASNVELSLVTFNTHGSY 62
KQLIV EGTAA+GPYWQ+IVSDYLEKIIR FC +EL G+ + S VELSLV FN+HGSY
Sbjct: 6 KQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSY 65
Query: 63 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNV 122
CACLVQRSGWT+DVDIFLHWLS+I F GGGFN+ A AEGL+EALMMFS P Q Q +
Sbjct: 66 CACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFS--PPSGQAQPSN 123
Query: 123 DGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSL 182
D +RHCIL+ ASNPH LPTPVYRP++QN+++NEN +AQAESRLSDAETVA F +CSVSL
Sbjct: 124 DLKRHCILITASNPHILPTPVYRPRLQNVERNENGDAQAESRLSDAETVASYFAKCSVSL 183
Query: 183 SVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANL 242
SV+CPKQLP + A+YNA K N ++AD +D +KN +LVLISENF+EA AALS NL
Sbjct: 184 SVVCPKQLPTIRALYNAGKPNQQSADLSIDTAKNTFYLVLISENFVEACAALSH-SATNL 242
Query: 243 APNQNPVKMD---IAPVTSVTGPAPTSIPSVNGI--NRPPISVGNVPTATVKVEPSTVTS 297
Q+PVK+D +AP VTG P + S NG NR P+SVG VPTATVKVEPSTVTS
Sbjct: 243 PQTQSPVKVDRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTS 302
Query: 298 MVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLV-SGMSQPLRP 356
M P+FPHIP+V RPA+Q +PS+QTSS S SQ+M+++ ++ P++KP+V SGM+ PLR
Sbjct: 303 MAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRT 362
Query: 357 MAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPT 416
P ANVN+LNNLSQ RQVM++AA + S+GQ+ +AMHMSNMIS+GMA+S+P
Sbjct: 363 GPPGGANVNLLNNLSQVRQVMSSAA----LAGAASSVGQSAVAMHMSNMISTGMATSLPP 418
Query: 417 SQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQG 476
SQ VFS+ Q GITS+ GSG L G++Q Q+ G N+ S + + SN +SQPM
Sbjct: 419 SQTVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQ---- 474
Query: 477 GASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSG 536
GM+QG+HSG M+Q GISMNQNMMSGLG VSSGTG M+PTPG+ QQAQSG
Sbjct: 475 --------GMNQGSHSGA-MMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSG 525
Query: 537 MQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRSAS 596
+Q L +N++A NMQLSQ +S A+ +SQSKYVKVWEG+LSGQRQGQPV IT+LEGYRSAS
Sbjct: 526 IQQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSAS 585
Query: 597 ASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQ 656
AS++LAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAM+QHGFLGQLQ+KKLCAVIQ
Sbjct: 586 ASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQ 645
Query: 657 LPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQI 689
LPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQI
Sbjct: 646 LPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQI 678
>sp|Q6GP15|MED25_XENLA Mediator of RNA polymerase II transcription subunit 25 OS=Xenopus
laevis GN=med25 PE=2 SV=1
Length = 801
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 30/242 (12%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTHG 60
++ +EGTA +GPY++S+ YL I F + G + + SLV FNT
Sbjct: 14 VVFVIEGTANLGPYFESLRKHYLLPAIEYFNGGPPAETDFGGDYGGT--QYSLVVFNTVD 71
Query: 61 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQ 119
VQ T F+ WL +I F GGG + IAEGLS AL +F + +
Sbjct: 72 CAPESYVQCHAPTSSAYEFVQWLDSIKFMGGGGESCSLIAEGLSTALQLF----DDFKKM 127
Query: 120 QNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQ 177
+ GQ H CIL+ S P+ LP E+ S + E + + +
Sbjct: 128 REQIGQTHKVCILICNSPPYLLPA---------------VESTTYSGYT-TENLVQKIGE 171
Query: 178 CSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRP 237
+ S+I P++LP L ++ A P D S++P ++L+ + A S P
Sbjct: 172 RGIHFSIISPRKLPALRTLFEKAMPVGLIEPQPKDYSQDPRHMILVRGMVLPVGGATSVP 231
Query: 238 GV 239
GV
Sbjct: 232 GV 233
>sp|A4IHD9|MED25_XENTR Mediator of RNA polymerase II transcription subunit 25 OS=Xenopus
tropicalis GN=med25 PE=2 SV=1
Length = 805
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 105/242 (43%), Gaps = 30/242 (12%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTHG 60
++ +EGTA +GPY++S+ YL I F + G + + SLV FNT
Sbjct: 15 VVFVIEGTANLGPYFESLRKHYLLPAIEYFNGGPPAETDFGGDYGGT--QYSLVVFNTVD 72
Query: 61 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQ 119
VQ T F+ WL +I F GGG + IAEGLS AL +F + +
Sbjct: 73 CAPESYVQCHAPTSSAYEFVQWLDSIRFMGGGGESCSLIAEGLSTALQLF----DDFKKM 128
Query: 120 QNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQ 177
+ GQ H CIL+ S P+ LP E+ S + E + + +
Sbjct: 129 REQIGQTHKVCILICNSPPYLLPA---------------VESTTYSGYT-TENLVQKIGE 172
Query: 178 CSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRP 237
+ SVI P++LP L ++ A P D S++P ++L+ + A S P
Sbjct: 173 RGIHFSVISPRKLPALRTLFEKAMPVGLIEPQPKDYSQDPRHMILVRGMVLPVGGATSVP 232
Query: 238 GV 239
GV
Sbjct: 233 GV 234
>sp|A2VE44|MED25_BOVIN Mediator of RNA polymerase II transcription subunit 25 OS=Bos
taurus GN=MED25 PE=2 SV=1
Length = 746
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 101/231 (43%), Gaps = 36/231 (15%)
Query: 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTH 59
++ +EGTA +GPY++ + YL I F + G + + SLV FNT
Sbjct: 17 DVVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGT--QYSLVVFNTV 74
Query: 60 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 118
VQ T F+ WL I F GGG + IAEGLS AL +F + +
Sbjct: 75 DCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLF----DDFKK 130
Query: 119 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 176
+ GQ H C+L+ S P+ LP E+ S + ET+ +
Sbjct: 131 MREQIGQTHRVCLLICNSPPYLLPA---------------VESTTYSGCT-TETLVQKIG 174
Query: 177 QCSVSLSVICPKQLPKLTAIYNAAKRNPRA----ADPPVDNSKNPHFLVLI 223
+ + S++ P++LP L ++ K P A PP D S++P +VL+
Sbjct: 175 ERGIYFSIVSPRKLPALRLLFE--KAAPPAMLEPLQPPADVSQDPRHMVLV 223
>sp|Q8VCB2|MED25_MOUSE Mediator of RNA polymerase II transcription subunit 25 OS=Mus
musculus GN=Med25 PE=1 SV=1
Length = 745
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 34/230 (14%)
Query: 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTH 59
++ +EGTA +GPY++ + YL I F + G + + SLV FNT
Sbjct: 17 DVVFVIEGTANLGPYFEELRKHYLLPAIEYFNGGPPAETDFGGDYGGT--QYSLVVFNTV 74
Query: 60 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 118
VQ T F+ WL I F GGG + IAEGLS AL +F + +
Sbjct: 75 DCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLF----DDFKK 130
Query: 119 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 176
+ GQ H C+L+ S P+ LP E+ S + E++ +
Sbjct: 131 MREQIGQTHRVCLLICNSPPYLLPA---------------VESTTYSGCT-TESLVQKIG 174
Query: 177 QCSVSLSVICPKQLPKLTAIYNAAKRNPRAADP---PVDNSKNPHFLVLI 223
+ + S++ P++LP L ++ A P +P P D S++P +VL+
Sbjct: 175 ERGIHFSIVSPRKLPALRLLFEKAA-PPALLEPLQQPADVSQDPRHMVLV 223
>sp|Q71SY5|MED25_HUMAN Mediator of RNA polymerase II transcription subunit 25 OS=Homo
sapiens GN=MED25 PE=1 SV=2
Length = 747
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 36/231 (15%)
Query: 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQTSASNVELSLVTFNTH 59
++ +EGTA +GPY++ + YL I F + G + + SLV FNT
Sbjct: 17 DVVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGT--QYSLVVFNTV 74
Query: 60 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 118
VQ T F+ WL I F GGG + IAEGLS AL +F + +
Sbjct: 75 DCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLF----DDFKK 130
Query: 119 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 176
+ GQ H C+L+ S P+ LP E+ S + E + +
Sbjct: 131 MREQIGQTHRVCLLICNSPPYLLPA---------------VESTTYSGCT-TENLVQQIG 174
Query: 177 QCSVSLSVICPKQLPKLTAIYNAAKRNPRA----ADPPVDNSKNPHFLVLI 223
+ + S++ P++LP L ++ K P A PP D S++P +VL+
Sbjct: 175 ERGIHFSIVSPRKLPALRLLFE--KAAPPALLEPLQPPTDVSQDPRHMVLV 223
>sp|Q9VDR1|MED25_DROME Mediator of RNA polymerase II transcription subunit 25
OS=Drosophila melanogaster GN=MED25 PE=2 SV=1
Length = 863
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 29/236 (12%)
Query: 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFC---VNELAGQTSASNVEL-SLVTFNTHG 60
++ +EG+A G Y + ++Y+ + F ++E + L +V + T
Sbjct: 10 DVVFVIEGSAINGAYINELKTNYILPTLEHFTTGSIDEREYLIAERFATLYGIVVYRTAA 69
Query: 61 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQ 119
+ + G + + +P GGG A +AEG + A F Q
Sbjct: 70 NLLEPVCSTYGPFLQPQKVMETIERLPLVGGGMESCAHMAEGFAAAHGCFDDISERRQLL 129
Query: 120 QNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCS 179
QRHCIL+ S P+ +PT E+ + +S E +A F +
Sbjct: 130 DQTSVQRHCILICNSPPYQMPT------------TESWKYPGKS----CEQLAALFNERK 173
Query: 180 VSLSVICPKQLPKLTAIYNAAKRNPRAADPPV---DNSKNPHFLVLISENFMEARA 232
++LS+I P+++P L ++ A D P+ + +KN LVL+ ++ RA
Sbjct: 174 INLSIIAPRKMPVLFKLFMKAD-----GDQPITSKNYAKNIRHLVLLKGYSLKERA 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 298,236,901
Number of Sequences: 539616
Number of extensions: 12840522
Number of successful extensions: 261315
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 1782
Number of HSP's that attempted gapping in prelim test: 67174
Number of HSP's gapped (non-prelim): 58349
length of query: 833
length of database: 191,569,459
effective HSP length: 126
effective length of query: 707
effective length of database: 123,577,843
effective search space: 87369535001
effective search space used: 87369535001
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)