Query 003297
Match_columns 833
No_of_seqs 339 out of 1402
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 20:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iue_A Pactolus I-domain; memb 99.6 4.3E-15 1.5E-19 152.6 15.1 170 4-197 4-183 (212)
2 3vi3_B Integrin beta-1; beta p 99.4 3.7E-12 1.3E-16 142.9 17.0 170 4-198 123-330 (454)
3 3fcs_B Integrin beta-3; beta p 99.4 3.8E-12 1.3E-16 150.4 16.7 173 4-198 112-323 (690)
4 3t3p_B Integrin beta-3; integr 99.4 6.1E-12 2.1E-16 142.0 17.2 172 4-198 112-323 (472)
5 3v4v_B Integrin beta-7; cell a 99.3 9.5E-12 3.3E-16 141.0 17.1 171 4-198 133-342 (503)
6 3k6s_B Integrin beta-2; cell r 99.3 4.1E-12 1.4E-16 149.9 12.3 175 4-200 105-315 (687)
7 1ijb_A VON willebrand factor; 99.0 5.8E-09 2E-13 104.3 15.2 149 3-198 13-168 (202)
8 2xgg_A Microneme protein 2; A/ 99.0 3.4E-09 1.2E-13 103.8 12.6 138 3-188 17-160 (178)
9 1v7p_C Integrin alpha-2; snake 98.9 8.6E-09 2.9E-13 102.4 14.1 137 3-187 6-145 (200)
10 1atz_A VON willebrand factor; 98.9 2.1E-08 7.2E-13 98.6 16.5 147 3-198 5-157 (189)
11 3n2n_F Anthrax toxin receptor 98.9 3.2E-09 1.1E-13 103.2 7.7 138 3-188 7-146 (185)
12 3ibs_A Conserved hypothetical 98.8 3.5E-08 1.2E-12 98.5 15.0 131 3-187 11-147 (218)
13 2b2x_A Integrin alpha-1; compu 98.8 3.4E-08 1.2E-12 99.9 14.0 139 3-187 22-161 (223)
14 1mf7_A Integrin alpha M; cell 98.8 1.4E-08 4.8E-13 100.1 10.3 137 3-188 5-145 (194)
15 1pt6_A Integrin alpha-1; cell 98.8 5.1E-08 1.8E-12 97.8 13.9 140 3-188 7-147 (213)
16 1n3y_A Integrin alpha-X; alpha 98.8 1.5E-08 5.3E-13 99.6 9.9 137 3-188 9-149 (198)
17 1shu_X Anthrax toxin receptor 98.8 2.5E-08 8.5E-13 96.6 10.6 136 3-188 6-143 (182)
18 4hqo_A Sporozoite surface prot 98.7 3.9E-08 1.3E-12 102.8 11.8 139 3-189 18-164 (266)
19 1q0p_A Complement factor B; VO 98.7 2.2E-07 7.6E-12 92.7 15.3 123 3-137 15-140 (223)
20 4b4t_W RPN10, 26S proteasome r 98.7 2.9E-07 9.8E-12 97.7 16.8 159 6-224 6-175 (268)
21 4hqf_A Thrombospondin-related 98.6 8.6E-08 2.9E-12 100.7 11.0 139 3-189 21-167 (281)
22 3zqk_A VON willebrand factor; 98.6 1.6E-07 5.3E-12 93.7 12.0 114 3-137 21-138 (199)
23 2x5n_A SPRPN10, 26S proteasome 98.6 1.3E-06 4.3E-11 88.1 16.5 160 4-227 3-174 (192)
24 1rrk_A Complement factor B; BB 98.5 5.5E-07 1.9E-11 101.1 13.6 122 4-137 2-126 (497)
25 2odp_A Complement C2; C3/C5 co 98.5 5E-07 1.7E-11 102.0 13.3 121 3-137 9-137 (509)
26 3hrz_D Complement factor B; se 98.4 7.5E-07 2.6E-11 104.9 13.1 119 4-137 244-368 (741)
27 1mjn_A Integrin alpha-L; rossm 98.4 2E-06 6.9E-11 84.2 12.2 111 3-137 2-116 (179)
28 4fx5_A VON willebrand factor t 98.3 1.3E-05 4.3E-10 91.1 16.7 105 3-137 77-192 (464)
29 3k6s_A Integrin alpha-X; cell 98.2 2.4E-06 8.3E-11 106.1 9.8 137 4-189 131-271 (1095)
30 2x31_A Magnesium-chelatase 60 98.1 1.1E-05 3.9E-10 78.7 10.6 110 3-138 5-115 (189)
31 1jey_B KU80; double-strand DNA 98.0 6.2E-05 2.1E-09 87.2 15.8 137 4-185 8-165 (565)
32 1jey_A KU70; double-strand DNA 97.9 9.6E-05 3.3E-09 86.5 14.0 145 3-187 34-205 (609)
33 3rag_A Uncharacterized protein 97.8 5E-05 1.7E-09 79.4 9.0 93 3-110 134-226 (242)
34 2ww8_A RRGA, cell WALL surface 97.2 0.0011 3.8E-08 80.8 11.5 119 4-137 225-391 (893)
35 1yvr_A RO autoantigen, 60-kDa 95.6 0.043 1.5E-06 63.0 11.3 98 3-136 368-472 (538)
36 1m2v_B SEC24, protein transpor 94.5 0.24 8.2E-06 60.8 13.6 109 78-204 402-523 (926)
37 3eh1_A Protein transport prote 94.5 0.54 1.9E-05 56.4 16.3 110 77-204 250-371 (751)
38 1pcx_A Protein transport prote 94.4 0.38 1.3E-05 58.2 15.0 107 80-204 288-407 (810)
39 3iot_A Maltose-binding protein 94.4 0.0078 2.7E-07 66.5 0.3 18 169-186 21-39 (449)
40 2nut_A Protein transport prote 93.2 0.49 1.7E-05 57.0 12.7 110 81-204 246-375 (769)
41 3iot_A Maltose-binding protein 92.4 0.03 1E-06 61.9 0.7 12 26-37 18-29 (449)
42 3efo_B SEC24 related gene fami 91.8 1.4 4.6E-05 53.2 14.0 37 168-204 356-396 (770)
43 1m2o_A SEC23, protein transpor 91.1 1.3 4.5E-05 53.2 13.0 110 81-204 240-369 (768)
44 3eh2_A Protein transport prote 90.4 2.6 8.8E-05 50.7 14.6 97 94-204 287-392 (766)
45 2nvo_A RO sixty-related protei 90.1 1.2 4E-05 51.3 11.0 16 3-18 362-377 (535)
46 4ex8_A ALNA; alpha/beta/alpha- 33.2 32 0.0011 37.1 4.2 52 28-91 174-232 (316)
47 2ky6_A Mediator of RNA polymer 33.0 5.9 0.0002 39.0 -1.3 124 566-696 10-146 (166)
48 2i9n_A MHB4A peptide; beta-hai 26.4 52 0.0018 23.4 2.9 24 83-106 6-30 (33)
49 1vlv_A Otcase, ornithine carba 24.4 90 0.0031 33.7 5.9 89 64-190 115-203 (325)
50 1yco_A Branched-chain phosphot 22.9 59 0.002 34.3 4.0 91 5-109 112-206 (279)
51 3csu_A Protein (aspartate carb 21.7 2.6E+02 0.009 29.9 8.8 91 64-190 100-192 (310)
52 3l15_A Transcriptional enhance 20.3 88 0.003 32.3 4.4 17 124-140 30-47 (231)
53 1pvv_A Otcase, ornithine carba 20.1 99 0.0034 33.2 5.1 90 62-190 101-190 (315)
No 1
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=99.61 E-value=4.3e-15 Score=152.58 Aligned_cols=170 Identities=9% Similarity=0.070 Sum_probs=123.1
Q ss_pred ccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCCHHHHHHHH
Q 003297 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWL 83 (833)
Q Consensus 4 ~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~~~fl~~L 83 (833)
.|||||+|.|+||++|++.+|+.. ..+++.+.. +..++|||++.|+|+ .| ...+.||+|.++|.+++
T Consensus 4 vDl~fl~D~S~SM~~di~~lk~~~-~~l~~~l~~-------~~~~~r~Gfg~f~Dk----~~-~~~l~lT~d~~~F~~~v 70 (212)
T 2iue_A 4 VDLYFLMGLSGSAQGHLSNVQTLG-SDLLKALNE-------ISRSGRIGFGSIVNM----TF-QHILKLTADSSQFQREL 70 (212)
T ss_dssp EEEEEEEECCGGGTTTHHHHHHHH-HHHHHHHHH-------HCSCEEEEEEEESSS----CE-EEEEEEESCHHHHHHHH
T ss_pred eEEEEEEeCCCcchhHHHHHHHHH-HHHHHHHHh-------hCcCceEEEEEEEcC----cc-eecCCcCCCHHHHHHHH
Confidence 799999999999999999999664 666666652 112589999999999 23 56788999999999999
Q ss_pred ccCccCCCCCchhHHHHHHHHHHhcc---ccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCC----cccCCcc--ccccc
Q 003297 84 STIPFAGGGFNDAAIAEGLSEALMMF---SVAPNGSQNQQNVDGQRHCILVAASNPHPLPTP----VYRPQMQ--NLDQN 154 (833)
Q Consensus 84 d~I~f~GGG~~~~AvaEGLa~AL~~f---~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~p----vy~p~~~--~~~~~ 154 (833)
+++..+||+|.+|+..|||..|+.|. .|+ . ..|.+||++|++||..... .+.|.-- .++.|
T Consensus 71 ~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr---------~-a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g 140 (212)
T 2iue_A 71 RKQLVSGKLATPKGQLDAVVQVAICLGEIGWR---------N-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDG 140 (212)
T ss_dssp HTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCC---------S-SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSS
T ss_pred hhccccCCCCCCchHHHHHHHHHHhhhhcccC---------C-ccEEEEEECcCCccccCCccccccccCCccccccCCC
Confidence 99999999999999999999999874 362 2 4699999999999997542 1111000 00111
Q ss_pred cchhhhhcccCCCHHHHHHHHhhcCcEEEE-eccCcchhHHHHH
Q 003297 155 ENNEAQAESRLSDAETVAKSFVQCSVSLSV-ICPKQLPKLTAIY 197 (833)
Q Consensus 155 e~~~~~~~~~l~d~e~la~~~~e~~I~LSv-IsPrklp~l~~lf 197 (833)
+ +........-+++++.+.+.+++|.+.. |+-.....+++|-
T Consensus 141 ~-y~~s~~~Dyps~~q~~~~l~~~~i~~ifavt~~~~~~Y~~l~ 183 (212)
T 2iue_A 141 M-YRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYEKLT 183 (212)
T ss_dssp B-BGGGGSSCCCCHHHHHHHHHHHTCEEEEEEEHHHHHHHHHHH
T ss_pred e-eccCcccCCCCHHHHHHHHHhcCCcEEEEEccchhHHHHHHH
Confidence 0 0111111235789999999999999766 5544444444443
No 2
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=99.39 E-value=3.7e-12 Score=142.92 Aligned_cols=170 Identities=8% Similarity=0.036 Sum_probs=126.2
Q ss_pred ccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCC---------------------Cc
Q 003297 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHG---------------------SY 62 (833)
Q Consensus 4 ~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~---------------------~~ 62 (833)
.||+|++|.|+||+++++.||+.- ..+++.++.- ..++|+|++.|.|++ |-
T Consensus 123 VDLyyLmDlS~SM~ddl~~lk~lg-~~L~~~l~~~-------t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~ 194 (454)
T 3vi3_B 123 IDLYYLMDLSYSMKDDLENVKSLG-TDLMNEMRRI-------TSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCT 194 (454)
T ss_dssp EEEEEEEECSGGGHHHHHHHTTHH-HHHHHHHTTT-------CSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCC
T ss_pred eeEEEEecCCcchhhHHHHHHHHH-HHHHHHHHhc-------CCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCC
Confidence 799999999999999999999875 6677777642 235899999999973 22
Q ss_pred ccccee-eccCCCCHHHHHHHHccCccCCCCCchhHHHHHHHHHHhc---cccCCCCCCCCCCcCCCcEEEEeecCCCCC
Q 003297 63 CACLVQ-RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMM---FSVAPNGSQNQQNVDGQRHCILVAASNPHP 138 (833)
Q Consensus 63 ~~~lv~-~~gfT~d~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~---f~~~~~~~~~~~~~~~qk~cILIa~SpP~~ 138 (833)
+.|..+ .+.+|+|..+|..+++++..+||+|.||+.+|||..|+.| +.|+ . ..|.+||++|++||.
T Consensus 195 ~~f~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR---------~-a~rllV~~TDa~fH~ 264 (454)
T 3vi3_B 195 TPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWR---------N-VTRLLVFSTDAGFHF 264 (454)
T ss_dssp CCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCC---------S-SEEEEEEEESSCBCC
T ss_pred CCcceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCc---------c-ceEEEEEECCCCcCc
Confidence 344444 5778999999999999999999999999999999988865 4562 2 468889999999997
Q ss_pred CCC------------CcccCCccccccccchhhhhcccCCCHHHHHHHHhhcCcE-EEEeccCcchhHHHHHH
Q 003297 139 LPT------------PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVS-LSVICPKQLPKLTAIYN 198 (833)
Q Consensus 139 lp~------------pvy~p~~~~~~~~e~~~~~~~~~l~d~e~la~~~~e~~I~-LSvIsPrklp~l~~lf~ 198 (833)
... .|+.- +++| -.+-.+ ..-...+|++.+.|++|. |+.|.-+....|++|-+
T Consensus 265 agDgkL~GIv~PNDg~CHL~--~~~Y-t~s~~~----DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~ 330 (454)
T 3vi3_B 265 AGDGKLGGIVLPNDGQCHLE--NNMY-TMSHYY----DYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKN 330 (454)
T ss_dssp TTTTGGGTCCSCCCCCCCEE--TTEE-CCTTTS----CCCCHHHHHHHHHHTTEEEEEEEEGGGHHHHHHHHH
T ss_pred CCCccccceecCCCCccEeC--CCcc-cccccC----CCCCHHHHHHHHHhcCCcEEEEEcCccchHHHHHHH
Confidence 664 22211 1111 111111 112569999999999999 66677776666555543
No 3
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=99.38 E-value=3.8e-12 Score=150.40 Aligned_cols=173 Identities=10% Similarity=0.032 Sum_probs=122.4
Q ss_pred ccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCcc--------------------
Q 003297 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYC-------------------- 63 (833)
Q Consensus 4 ~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~-------------------- 63 (833)
.||+|+||.|+||++||+.||+.- ..+++.+.. + ..++|||++.|+|++..+
T Consensus 112 vDly~LmD~S~SM~ddi~~lk~l~-~~l~~~l~~--~-----t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~ 183 (690)
T 3fcs_B 112 VDIYYLMDLSYSMKDDLWSIQNLG-TKLATQMRK--L-----TSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTT 183 (690)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTTT-HHHHHHHHH--H-----CSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSC
T ss_pred ccEEEEecCCcchHHHHHHHHHHH-HHHHHHHHh--h-----CcCceEEeEEeeccccCCccccChhhhccCCCcCCCCC
Confidence 799999999999999999998764 556666653 1 125899999999966322
Q ss_pred ---cccee-eccCCCCHHHHHHHHccCccCCCCCchhHHHHHHHHHHhcc---ccCCCCCCCCCCcCCCcEEEEeecCCC
Q 003297 64 ---ACLVQ-RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMF---SVAPNGSQNQQNVDGQRHCILVAASNP 136 (833)
Q Consensus 64 ---~~lv~-~~gfT~d~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f---~~~~~~~~~~~~~~~qk~cILIa~SpP 136 (833)
.|..+ .+.+|+|..+|.++|+++..+||+|.+|+.+|||..|+.+. .|+. ...|.+|||+|+++
T Consensus 184 c~~~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~---------~a~rllv~~TDa~~ 254 (690)
T 3fcs_B 184 CLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRN---------DASHLLVFTTDAKT 254 (690)
T ss_dssp CCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS---------SSEEEEEEEESSCB
T ss_pred CCCCccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCC---------CceEEEEEECCCcc
Confidence 12222 35679999999999999999999999999999999999554 3632 45789999999999
Q ss_pred CCCCCC----cccC-----Ccc--ccccccchhhhhcccCCCHHHHHHHHhhcCcEEEE-eccCcchhHHHHHH
Q 003297 137 HPLPTP----VYRP-----QMQ--NLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSV-ICPKQLPKLTAIYN 198 (833)
Q Consensus 137 ~~lp~p----vy~p-----~~~--~~~~~e~~~~~~~~~l~d~e~la~~~~e~~I~LSv-IsPrklp~l~~lf~ 198 (833)
|-.... ...| +|+ ++|. . ......-+..+|++.+.+++|.+-+ +.-+.+..|++|.+
T Consensus 255 H~agDg~l~gi~~pnd~~chl~~~~~y~-~----s~~~DypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~ 323 (690)
T 3fcs_B 255 HIALDGRLAGIVQPNDGQCHVGSDNHYS-A----STTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSE 323 (690)
T ss_dssp CCTTGGGGGTCCSCCCCCCCBCTTCBBG-G----GGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHH
T ss_pred ccCCCccccceecCCCcceeecCCCccc-c----ccccCCCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHh
Confidence 954321 1111 111 1111 1 1111123579999999999999665 54444555565554
No 4
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=99.37 E-value=6.1e-12 Score=142.00 Aligned_cols=172 Identities=9% Similarity=-0.002 Sum_probs=126.1
Q ss_pred ccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCC----------------------
Q 003297 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGS---------------------- 61 (833)
Q Consensus 4 ~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~---------------------- 61 (833)
.||+|++|.|+||++|++.||+.- ..+++.+..- ..++|||++.|+|++-
T Consensus 112 vDLy~LmDlS~SM~ddl~~lk~lg-~~L~~~l~~~-------t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~ 183 (472)
T 3t3p_B 112 VDIYYLMDLSYSMKDDLWSIQNLG-TKLATQMRKL-------TSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTT 183 (472)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTHH-HHHHHHHTTT-------CSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSC
T ss_pred ceEEEEEccCcchHHHHHHHHHHH-HHHHHHHHhc-------CcCcEEEEEEeeccccCccccCChhhhhcCCCcccccC
Confidence 799999999999999999999775 6777777641 2258999999999742
Q ss_pred -cccccee-eccCCCCHHHHHHHHccCccCCCCCchhHHHHHHHHHHhc---cccCCCCCCCCCCcCCCcEEEEeecCCC
Q 003297 62 -YCACLVQ-RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMM---FSVAPNGSQNQQNVDGQRHCILVAASNP 136 (833)
Q Consensus 62 -~~~~lv~-~~gfT~d~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~---f~~~~~~~~~~~~~~~qk~cILIa~SpP 136 (833)
.+.|..+ .+.+|+|..+|..+++++..+||+|.+|+.+|||..|+.| +.|+. +..|.+||++|+++
T Consensus 184 c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~---------~a~rllV~~TDa~~ 254 (472)
T 3t3p_B 184 CLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRN---------DASHLLVFTTDAKT 254 (472)
T ss_dssp CCCCCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS---------SSEEEEEEEESSCB
T ss_pred CCCCcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCC---------CceEEEEEECCCCc
Confidence 1233333 4678999999999999999999999999999999998854 45632 45689999999999
Q ss_pred CCCCC------------CcccCCccccccccchhhhhcccCCCHHHHHHHHhhcCcE-EEEeccCcchhHHHHHH
Q 003297 137 HPLPT------------PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVS-LSVICPKQLPKLTAIYN 198 (833)
Q Consensus 137 ~~lp~------------pvy~p~~~~~~~~e~~~~~~~~~l~d~e~la~~~~e~~I~-LSvIsPrklp~l~~lf~ 198 (833)
|.... .|+.-. +++| .. ......-...+|++.+.|++|. |+.|.-+....|++|-+
T Consensus 255 H~agDgkL~GIv~pnDg~CHL~~-~~~Y-~~----s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~ 323 (472)
T 3t3p_B 255 HIALDGRLAGIVQPNDGQCHVGS-DNHY-SA----STTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSE 323 (472)
T ss_dssp CCTTGGGGGTCCCCCCCCCCBCT-TCBB-TT----TTTSCCCCHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHH
T ss_pred CcCCCccccceecCCCCceEECC-CCcc-cc----cccCCCCCHHHHHHHHHhcCccEEEEEeccchhHHHHHHH
Confidence 97654 222100 1111 11 1111223579999999999999 55577766666666543
No 5
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=99.35 E-value=9.5e-12 Score=140.99 Aligned_cols=171 Identities=10% Similarity=0.070 Sum_probs=125.8
Q ss_pred ccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCC----------------------C
Q 003297 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHG----------------------S 61 (833)
Q Consensus 4 ~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~----------------------~ 61 (833)
.||+|++|.|+||++|++.||+.- ..+++.+.. ...++|||++.|+|++ |
T Consensus 133 VDLyyLmDlS~SM~ddl~~lk~lg-~~L~~~l~~-------~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c 204 (503)
T 3v4v_B 133 VDLYYLMDLSYSMKDDLERVRQLG-HALLVRLQE-------VTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERC 204 (503)
T ss_dssp EEEEEEEECSGGGHHHHHHHHHSS-HHHHHHHTT-------TCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCC
T ss_pred eeEEEEEecCcchhhHHHHHHHHH-HHHHHHHHh-------hCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCC
Confidence 799999999999999999999765 667777764 1235899999999963 2
Q ss_pred cccccee-eccCCCCHHHHHHHHccCccCCCCCchhHHHHHHHHHHhc---cccCCCCCCCCCCcCCCcEEEEeecCCCC
Q 003297 62 YCACLVQ-RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMM---FSVAPNGSQNQQNVDGQRHCILVAASNPH 137 (833)
Q Consensus 62 ~~~~lv~-~~gfT~d~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~---f~~~~~~~~~~~~~~~qk~cILIa~SpP~ 137 (833)
.+.|..+ .+.+|+|..+|..+++++..+||+|.+|+.+|||..|+.| +.|+. ..|.+||++|+++|
T Consensus 205 ~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~----------a~rllV~~TDA~fH 274 (503)
T 3v4v_B 205 QSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRN----------VSRLLVFTSDDTFH 274 (503)
T ss_dssp CCCCSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS----------SEEEEEEEESSCBC
T ss_pred CCCcceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCCc----------ceEEEEEECCCCcC
Confidence 2234444 4678999999999999999999999999999999988854 45632 35889999999999
Q ss_pred CCCC------------CcccCCccccccccchhhhhcccCCCHHHHHHHHhhcCcE-EEEeccCcchhHHHHHH
Q 003297 138 PLPT------------PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVS-LSVICPKQLPKLTAIYN 198 (833)
Q Consensus 138 ~lp~------------pvy~p~~~~~~~~e~~~~~~~~~l~d~e~la~~~~e~~I~-LSvIsPrklp~l~~lf~ 198 (833)
.... .|+.-. +++| .....-..-...+|++.+.|++|. |+.|.-+.+..|++|-+
T Consensus 275 ~agDgkLaGIv~pNDg~CHL~~-~~~Y-----t~s~~~DYPSv~ql~~kL~ennI~~IFAVt~~~~~~Y~~L~~ 342 (503)
T 3v4v_B 275 TAGDGKLGGIFMPSDGHCHLDS-NGLY-----SRSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVYQELSK 342 (503)
T ss_dssp CTTGGGTTTCCSCCCSSCCBCT-TSBB-----GGGGGSCCCCHHHHHHHHHHHTEEEEEEECSSSHHHHHHHHT
T ss_pred cCCCccccceecCCCCCeEECC-CCcc-----ccccccCCCCHHHHHHHHHhcCCeEEEEEcccchhHHHHHHH
Confidence 7654 222100 1122 111112223579999999999998 55677777766666543
No 6
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=99.32 E-value=4.1e-12 Score=149.92 Aligned_cols=175 Identities=7% Similarity=0.045 Sum_probs=123.7
Q ss_pred ccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCcc--------------------
Q 003297 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYC-------------------- 63 (833)
Q Consensus 4 ~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~-------------------- 63 (833)
.||+|+||.|+||++||+.||+.- ..+++.+.. + ..++|||++.|+|++..+
T Consensus 105 vDly~LmD~S~SM~ddi~~lk~l~-~~l~~~l~~--~-----t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c 176 (687)
T 3k6s_B 105 IDLYYLMDLSYSMLDDLRNVKKLG-GDLLRALNE--I-----TESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKEC 176 (687)
T ss_dssp CEEEEEEECSSTTHHHHHTTTTCC-TTHHHHHHS--S-----CCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCC
T ss_pred eeEEEEEcCCcchHHHHHHHHHHH-HHHHHHHHh--h-----CcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCc
Confidence 799999999999999999999764 666666653 1 125899999999954322
Q ss_pred --cccee-eccCCCCHHHHHHHHccCccCCCCCchhHHHHHHHHHH---hccccCCCCCCCCCCcCCCcEEEEeecCCCC
Q 003297 64 --ACLVQ-RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEAL---MMFSVAPNGSQNQQNVDGQRHCILVAASNPH 137 (833)
Q Consensus 64 --~~lv~-~~gfT~d~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL---~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~ 137 (833)
.|..+ .+.+|+|..+|.++++++..+||+|.+|+.+|||..|+ ..+.|+ . ..|.+|||+|+++|
T Consensus 177 ~~~f~f~~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr---------~-a~rllV~~TDa~~H 246 (687)
T 3k6s_B 177 QPPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWR---------N-VTRLLVFATDDGFH 246 (687)
T ss_dssp CCCCSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCC---------S-SCCEEEEECSSCCC
T ss_pred CCcccceeecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCc---------c-ceEEEEEECCCccc
Confidence 22222 35679999999999999999999999999999999999 345562 2 46899999999999
Q ss_pred CCCCC----cccC-----CccccccccchhhhhcccCCCHHHHHHHHhhcCcEEEE-eccCcchhHHHHHHHh
Q 003297 138 PLPTP----VYRP-----QMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSV-ICPKQLPKLTAIYNAA 200 (833)
Q Consensus 138 ~lp~p----vy~p-----~~~~~~~~e~~~~~~~~~l~d~e~la~~~~e~~I~LSv-IsPrklp~l~~lf~ka 200 (833)
-.... ++.| +|.+-.+..+-++ ..-+..+|++.+.+++|.+-+ +.-+.+..|++|.+.-
T Consensus 247 ~agDg~l~gi~~pndg~Chl~~~~y~~s~~~----DyPS~~ql~~~l~~~~I~~ifavt~~~~~~y~~l~~~i 315 (687)
T 3k6s_B 247 FAGDGKLGAILTPNDGRCHLEDNLYKRSNEF----DYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEII 315 (687)
T ss_dssp CTTGGGGGTCCCCCCSCCCCSSSBCSSGGGS----CCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHHS
T ss_pred cCCCccccceecCCCCccccCCCcccccccc----CCCCHHHHHHHHHHcCCeEEEEEeccchhhHHHHHhhc
Confidence 54431 1111 1221111111111 112468999999999998665 5555566666666543
No 7
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.98 E-value=5.8e-09 Score=104.27 Aligned_cols=149 Identities=15% Similarity=0.209 Sum_probs=105.5
Q ss_pred CccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCC--CCHHHH
Q 003297 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDIF 79 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT--~d~~~f 79 (833)
..|||||||+++||+. .|+.+| +++..+++.|.-+. ...|+|||.|.+..- ..+.|+ .|...+
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k-~~~~~~v~~l~~~~-------~~~rv~vv~fs~~~~------~~~~l~~~~~~~~~ 78 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLK-AFVVDMMERLRVSQ-------KWVRVAVVEYHDGSH------AYIGLKDRKRPSEL 78 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHH-HHHHHHHHTBCBST-------TSEEEEEEEESSSEE------EEECTTCCCCHHHH
T ss_pred cccEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcccCC-------CceEEEEEEECCCce------EEEecCCCCCHHHH
Confidence 4899999999999985 677665 56788888886211 147999999987632 234444 788999
Q ss_pred HHHHccCccCCCCCchhHHHHHHHHHH-hccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003297 80 LHWLSTIPFAGGGFNDAAIAEGLSEAL-MMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 158 (833)
Q Consensus 80 l~~Ld~I~f~GGG~~~~AvaEGLa~AL-~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~ 158 (833)
...|++|.+.||| .-++.+||..|+ ++|.. . .+....|.+|||+|..++..
T Consensus 79 ~~~i~~l~~~gg~--~T~~~~aL~~a~~~~~~~--~-----~r~~~~~~iillTDG~~~~~------------------- 130 (202)
T 1ijb_A 79 RRIASQVKYAGSQ--VASTSEVLKYTLFQIFSK--I-----DRPEASRIALLLMASQEPQR------------------- 130 (202)
T ss_dssp HHHHHTCCCCCBS--CCCHHHHHHHHHHHTSSS--C-----SCTTSEEEEEEEECCCCCGG-------------------
T ss_pred HHHHHhCcCCCCC--cCcHHHHHHHHHHHHhcc--C-----CCCCCCeEEEEEccCCCCcc-------------------
Confidence 9999999998764 356777888887 45642 1 12345789999998776421
Q ss_pred hhhcccCCCHHHHHHHHhhcCcEEEEeccCc---chhHHHHHH
Q 003297 159 AQAESRLSDAETVAKSFVQCSVSLSVICPKQ---LPKLTAIYN 198 (833)
Q Consensus 159 ~~~~~~l~d~e~la~~~~e~~I~LSvIsPrk---lp~l~~lf~ 198 (833)
...++...++.+.+++|.+++|.=-. ...|+.|-.
T Consensus 131 -----~~~~~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~iA~ 168 (202)
T 1ijb_A 131 -----MSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEK 168 (202)
T ss_dssp -----GCTTHHHHHHHHHHTTEEEEEEEESTTSCHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHHCCCEEEEEecCCcCCHHHHHHHhC
Confidence 01266788999999999999975442 244555544
No 8
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.97 E-value=3.4e-09 Score=103.75 Aligned_cols=138 Identities=12% Similarity=0.217 Sum_probs=98.9
Q ss_pred CccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCC----CHH
Q 003297 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DVD 77 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~----d~~ 77 (833)
..|||||||+++||+. .|+.+| +++..+++.|..++ ...|+|||.|.+... ..+.|+. |..
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k-~~~~~~i~~l~~~~-------~~~rv~vv~F~~~~~------~~~~l~~~~~~~~~ 82 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVK-QFLHTFLMVLPIGP-------EEVNNAVVTYSTDVH------LQWDLQSPNAVDKQ 82 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHH-HHHHHHHHHSCBST-------TSEEEEEEEESSSEE------EEECTTSGGGSCHH
T ss_pred CeeEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcCCCC-------CCeEEEEEEeCCceE------EEEeCCCCCccCHH
Confidence 4899999999999964 676554 56778888876321 137999999987632 2344444 889
Q ss_pred HHHHHHccCccCCCCCchhHHHHHHHHHHhc-cccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccc
Q 003297 78 IFLHWLSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNEN 156 (833)
Q Consensus 78 ~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~-f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~ 156 (833)
.|+.+|+.|.+.||| -.+.+||..|++. |.... . ......|.+|||+|-.+..-
T Consensus 83 ~~~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~~-g----~r~~~~~~iillTDG~~~~~----------------- 137 (178)
T 2xgg_A 83 LAAHAVLDMPYKKGS---TNTSDGLKACKQILFTGSR-P----GREHVPKLVIGMTDGESDSD----------------- 137 (178)
T ss_dssp HHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHHCCC-T----TCTTSCEEEEEEESSCCCHH-----------------
T ss_pred HHHHHHHhCCCCCCC---ccHHHHHHHHHHHhcCccc-C----CCCCCCEEEEEEcCCCCCCC-----------------
Confidence 999999999987765 4577888888875 44211 1 12356789999998765310
Q ss_pred hhhhhcccCCCHHHHHHHHhhcCcEEEEeccC
Q 003297 157 NEAQAESRLSDAETVAKSFVQCSVSLSVICPK 188 (833)
Q Consensus 157 ~~~~~~~~l~d~e~la~~~~e~~I~LSvIsPr 188 (833)
.+++.+++.+.+++|.+++|.--
T Consensus 138 ---------~~~~~~~~~l~~~gi~v~~igvG 160 (178)
T 2xgg_A 138 ---------FRTVRAAKEIRELGGIVTVLAVG 160 (178)
T ss_dssp ---------HHHSHHHHHHHHTTCEEEEEECC
T ss_pred ---------ccHHHHHHHHHHCCCEEEEEEcC
Confidence 13567889999999999998544
No 9
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.93 E-value=8.6e-09 Score=102.44 Aligned_cols=137 Identities=14% Similarity=0.207 Sum_probs=99.2
Q ss_pred CccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCC--CCHHHHH
Q 003297 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDIFL 80 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT--~d~~~fl 80 (833)
..|||||||+++||++ |+.+| +++..+++.|.-++ ...|+|||.|.+..- ..++|+ .+...++
T Consensus 6 ~~div~vlD~SgSm~~-~~~~k-~~~~~~~~~l~~~~-------~~~rvglv~f~~~~~------~~~~l~~~~~~~~~~ 70 (200)
T 1v7p_C 6 LIDVVVVCDESNSIYP-WDAVK-NFLEKFVQGLDIGP-------TKTQVGLIQYANNPR------VVFNLNTYKTKEEMI 70 (200)
T ss_dssp CEEEEEEEECCTTCCC-HHHHH-HHHHHHHHTSCBST-------TSEEEEEEEESSSEE------EEECTTTCSSHHHHH
T ss_pred cccEEEEEECCCCccc-HHHHH-HHHHHHHHhcCCCC-------CceEEEEEEECCCce------EEEeCCCcCCHHHHH
Confidence 4799999999999996 66554 66777888775211 147999999987632 234444 5889999
Q ss_pred HHHccCccCCCCCchhHHHHHHHHHHh-ccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003297 81 HWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 159 (833)
Q Consensus 81 ~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~~ 159 (833)
..|+.|...||+ ..++.+||..|++ +|.... ..+....|.+|||+|-.++. .
T Consensus 71 ~~i~~l~~~~G~--~T~~~~al~~a~~~~~~~~~-----g~r~~~~~~ivllTDG~~~~---~----------------- 123 (200)
T 1v7p_C 71 VATSQTSQYGGD--LTNTFGAIQYARKYAYSAAS-----GGRRSATKVMVVVTDGESHD---G----------------- 123 (200)
T ss_dssp HHHHHCCCCCCS--CCCHHHHHHHHHHHTTSGGG-----TCCTTSEEEEEEEESSCCSC---G-----------------
T ss_pred HHHHhhhccCCC--CCcHHHHHHHHHHhhccccc-----CCCCCCCeEEEEEccCCCCC---c-----------------
Confidence 999999987663 2468888888887 464311 01134678999999887652 0
Q ss_pred hhcccCCCHHHHHHHHhhcCcEEEEecc
Q 003297 160 QAESRLSDAETVAKSFVQCSVSLSVICP 187 (833)
Q Consensus 160 ~~~~~l~d~e~la~~~~e~~I~LSvIsP 187 (833)
.+++.+++.+.+++|.+++|.-
T Consensus 124 ------~~~~~~~~~~~~~gi~i~~igv 145 (200)
T 1v7p_C 124 ------SMLKAVIDQCNHDNILRFGIAV 145 (200)
T ss_dssp ------GGHHHHHHHHHHTTEEEEEEEE
T ss_pred ------ccHHHHHHHHHHCCCEEEEEEe
Confidence 1456788999999999999865
No 10
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.93 E-value=2.1e-08 Score=98.61 Aligned_cols=147 Identities=12% Similarity=0.248 Sum_probs=101.6
Q ss_pred CccEEEEEeCCccch-HhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccC--CCCHHHH
Q 003297 3 EKQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGW--TKDVDIF 79 (833)
Q Consensus 3 ~~dvVFVID~Tasmg-~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gf--T~d~~~f 79 (833)
..|||||||+++||+ ..|+.+| +++..+++.|.-++ ...|+|||.|.+... ..++| +.|...+
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k-~~~~~~~~~l~~~~-------~~~rv~lv~f~~~~~------~~~~l~~~~~~~~~ 70 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMK-SFAKAFISKANIGP-------RLTQVSVLQYGSITT------IDVPWNVVPEKAHL 70 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHH-HHHHHHHHHSCBST-------TSEEEEEEEESSSEE------EEECTTCCCCHHHH
T ss_pred ceeEEEEEeCCCCCChhhHHHHH-HHHHHHHHhcCcCC-------CCeEEEEEEECCcce------EEEecCCCCCHHHH
Confidence 479999999999998 5676665 45677888775321 147999999976521 23444 8999999
Q ss_pred HHHHccCccCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003297 80 LHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 159 (833)
Q Consensus 80 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~~ 159 (833)
...|+.|.+.||| .++.+||..|++.+...... .+....|++|+|.+--++.
T Consensus 71 ~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~~g----~r~~~~~~vivltdg~~~~--------------------- 122 (189)
T 1atz_A 71 LSLVDVMQREGGP---SQIGDALGFAVRYLTSEMHG----ARPGASKAVVILVTDVSVD--------------------- 122 (189)
T ss_dssp HHHHHTCCCCCCC---CCHHHHHHHHHHHHHSCCTT----CCTTSEEEEEEEECSCCSS---------------------
T ss_pred HHHHHhCcCCCCc---chHHHHHHHHHHHHhccccC----CCCCCCcEEEEEeCCCCCc---------------------
Confidence 9999999987665 57888888888766431111 1123456788887654321
Q ss_pred hhcccCCCHHHHHHHHhhcCcEEEEeccCc---chhHHHHHH
Q 003297 160 QAESRLSDAETVAKSFVQCSVSLSVICPKQ---LPKLTAIYN 198 (833)
Q Consensus 160 ~~~~~l~d~e~la~~~~e~~I~LSvIsPrk---lp~l~~lf~ 198 (833)
+++.+++.+.+++|.+++|.=-. ...|+.|-.
T Consensus 123 -------~~~~~~~~~~~~gi~v~~igvG~~~~~~~L~~iA~ 157 (189)
T 1atz_A 123 -------SVDAAADAARSNRVTVFPIGIGDRYDAAQLRILAG 157 (189)
T ss_dssp -------CCHHHHHHHHHTTEEEEEEEESSSSCHHHHHHHTG
T ss_pred -------hHHHHHHHHHHCCCEEEEEEcCCcCCHHHHHHHHC
Confidence 34678889999999999976543 234444433
No 11
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.86 E-value=3.2e-09 Score=103.20 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=97.9
Q ss_pred CccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCCHHHHHHH
Q 003297 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 82 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~~~fl~~ 82 (833)
..|||||||+++||+..|+.++ +++..+++.|-. ...|+|||.|.+... ..++++.|...+..+
T Consensus 7 ~~div~vlD~SgSM~~~~~~~~-~~~~~~~~~~~~---------~~~~v~lv~f~~~~~------~~~~l~~~~~~~~~~ 70 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHHWNEIY-YFVEQLAHKFIS---------PQLRMSFIVFSTRGT------TLMKLTEDREQIRQG 70 (185)
T ss_dssp EEEEEEEEECSGGGGGGHHHHH-HHHHHHHHHCCC---------TTEEEEEEEESSSEE------EEEEEECCHHHHHHH
T ss_pred CeeEEEEEeCCCChhhhHHHHH-HHHHHHHHHhCC---------CCcEEEEEEEecCce------EEeccCCCHHHHHHH
Confidence 3799999999999999887654 566777777732 147999999987632 356778899999999
Q ss_pred HccCc--cCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003297 83 LSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 160 (833)
Q Consensus 83 Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~~~ 160 (833)
|++|. +.||| -.+.+||..|++.+..... ......|++|||+|-.+..-.
T Consensus 71 i~~l~~~~~~g~---T~~~~al~~a~~~l~~~~~-----~~~~~~~~iillTDG~~~~~~-------------------- 122 (185)
T 3n2n_F 71 LEELQKVLPGGD---TYMHEGFERASEQIYYENR-----QGYRTASVIIALTDGELHEDL-------------------- 122 (185)
T ss_dssp HHHHHTCCCCSC---CCHHHHHHHHHHHHHHHHT-----TCBCEEEEEEEEECCCCCHHH--------------------
T ss_pred HHHHhhhcCCCC---ccHHHHHHHHHHHHhhccc-----cCCCCCcEEEEEcCCCCCCCc--------------------
Confidence 99988 34665 4467777777764411000 011257899999987653100
Q ss_pred hcccCCCHHHHHHHHhhcCcEEEEeccC
Q 003297 161 AESRLSDAETVAKSFVQCSVSLSVICPK 188 (833)
Q Consensus 161 ~~~~l~d~e~la~~~~e~~I~LSvIsPr 188 (833)
..+++..++.+.+++|.+++|.-.
T Consensus 123 ----~~~~~~~~~~~~~~gi~i~~igvg 146 (185)
T 3n2n_F 123 ----FFYSEREANRSRDLGAIVYAVGVK 146 (185)
T ss_dssp ----HHHHHHHHHHHHHTTEEEEEEECS
T ss_pred ----ccchHHHHHHHHHCCCEEEEEEec
Confidence 013467899999999999998665
No 12
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=3.5e-08 Score=98.52 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=97.7
Q ss_pred CccEEEEEeCCccchH------hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCCH
Q 003297 3 EKQLIVAVEGTAAMGP------YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDV 76 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~------y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~ 76 (833)
..|||||||+++||.. -|+.+| +.+..+++.+. ..++|||.|.+.. ...++||.|.
T Consensus 11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak-~~~~~~~~~~~-----------~~~v~lv~F~~~~------~~~~~~~~~~ 72 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQDVQPSRLEKAK-RLISRLVDELD-----------NDKVGMIVFAGDA------FTQLPITSDY 72 (218)
T ss_dssp CCEEEEEEECSGGGGCCSSSSCHHHHHH-HHHHHHHHTCS-----------SCEEEEEEESSSE------EEEEEEESCH
T ss_pred CCcEEEEEECCcCcccccCCcCHHHHHH-HHHHHHHHhCC-----------CCeEEEEEECCCc------eEeCCCCCCH
Confidence 4799999999999986 456555 34455555443 2699999998762 2456788899
Q ss_pred HHHHHHHccCccCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccc
Q 003297 77 DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNEN 156 (833)
Q Consensus 77 ~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~ 156 (833)
..+..+|+.|.......+...+.+||..|+..+.+. ....|.+|||+|-.+..
T Consensus 73 ~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~---------~~~~~~ivllTDG~~~~------------------ 125 (218)
T 3ibs_A 73 ISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQ---------EGVGRAIIVITDGENHE------------------ 125 (218)
T ss_dssp HHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSC---------SSCCEEEEEEECCTTCC------------------
T ss_pred HHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhC---------CCCCcEEEEEcCCCCCC------------------
Confidence 999999999986422233467899999999988642 23568999999876531
Q ss_pred hhhhhcccCCCHHHHHHHHhhcCcEEEEecc
Q 003297 157 NEAQAESRLSDAETVAKSFVQCSVSLSVICP 187 (833)
Q Consensus 157 ~~~~~~~~l~d~e~la~~~~e~~I~LSvIsP 187 (833)
.+++.+++.+.+++|.+++|.-
T Consensus 126 ---------~~~~~~~~~~~~~~i~v~~igi 147 (218)
T 3ibs_A 126 ---------GGAVEAAKAAAEKGIQVSVLGV 147 (218)
T ss_dssp ---------SCHHHHHHHHHTTTEEEEEEEE
T ss_pred ---------CcHHHHHHHHHhcCCEEEEEEe
Confidence 1467889999999999999754
No 13
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.82 E-value=3.4e-08 Score=99.94 Aligned_cols=139 Identities=14% Similarity=0.253 Sum_probs=96.9
Q ss_pred CccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCCHHHHHHH
Q 003297 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 82 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~~~fl~~ 82 (833)
..|||||||+++||+. |+.+| +++..+++.|.-+. ...|+|||.|.+... .+..+....+...++..
T Consensus 22 ~~div~vlD~SgSM~~-~~~~k-~~~~~~~~~l~~~~-------~~~rv~lv~F~~~~~----~~~~l~~~~~~~~~~~~ 88 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYP-WESVI-AFLNDLLKRMDIGP-------KQTQVGIVQYGENVT----HEFNLNKYSSTEEVLVA 88 (223)
T ss_dssp CEEEEEEEECSTTCCC-HHHHH-HHHHHHHTTSCCST-------TSCCEEEEEESSSEE----EEECTTTCCSHHHHHHH
T ss_pred cceEEEEEECCCChhh-HHHHH-HHHHHHHHhcccCC-------CCeEEEEEEeCCCcc----EEEecCCCCCHHHHHHH
Confidence 4799999999999995 56554 55667777664211 247999999976522 11222344678899999
Q ss_pred HccCccCCCCCchhHHHHHHHHHHhc-cccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhh
Q 003297 83 LSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQA 161 (833)
Q Consensus 83 Ld~I~f~GGG~~~~AvaEGLa~AL~~-f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~~~~ 161 (833)
|+.|...||+ ...+.+||..|++. |+... .......|.+|||+|-.+..-
T Consensus 89 i~~l~~~gG~--~T~~~~aL~~a~~~l~~~~~-----~~~~~~~~~iillTDG~~~~~---------------------- 139 (223)
T 2b2x_A 89 ANKIVQRGGR--QTMTALGIDTARKEAFTEAR-----GARRGVKKVMVIVTDGESHDN---------------------- 139 (223)
T ss_dssp HTTCCCCCCS--SCCHHHHHHHHHHTTSSGGG-----TCCTTSEEEEEEEESSCCTTG----------------------
T ss_pred HHhhhccCCC--CccHHHHHHHHHHHhcCccc-----CCCCCCCeEEEEEcCCCCCCC----------------------
Confidence 9999877663 24678888888875 65211 012346789999998765410
Q ss_pred cccCCCHHHHHHHHhhcCcEEEEecc
Q 003297 162 ESRLSDAETVAKSFVQCSVSLSVICP 187 (833)
Q Consensus 162 ~~~l~d~e~la~~~~e~~I~LSvIsP 187 (833)
.+++.+++.+.+++|.+++|.-
T Consensus 140 ----~~~~~~~~~~~~~gi~v~~igv 161 (223)
T 2b2x_A 140 ----YRLKQVIQDCEDENIQRFSIAI 161 (223)
T ss_dssp ----GGHHHHHHHHHTTTEEEEEEEE
T ss_pred ----ccHHHHHHHHHHCCCEEEEEEe
Confidence 1467889999999999999764
No 14
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.80 E-value=1.4e-08 Score=100.08 Aligned_cols=137 Identities=12% Similarity=0.178 Sum_probs=97.0
Q ss_pred CccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCC--CHHHH
Q 003297 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDIF 79 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~--d~~~f 79 (833)
..|||||||+++||+. .|+.+| +++..+++.|.. ...|+|||.|.+... ..++|+. |...+
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k-~~~~~~~~~l~~---------~~~~v~vv~f~~~~~------~~~~l~~~~~~~~~ 68 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPHDFRRMK-EFVSTVMEQLKK---------SKTLFSLMQYSEEFR------IHFTFKEFQNNPNP 68 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHH-HHHHHHHHHHCC---------TTEEEEEEEESSSEE------EEECHHHHHHSCCH
T ss_pred CeeEEEEEeCCCCCCHHHHHHHH-HHHHHHHHhcCC---------CCeEEEEEEecCCce------EEEecCCcCCHHHH
Confidence 4799999999999987 677665 567788888861 137999999987632 3345544 34578
Q ss_pred HHHHccCccCCCCCchhHHHHHHHHHHh-ccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003297 80 LHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 158 (833)
Q Consensus 80 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~ 158 (833)
...|++|.+.||| -.+.+||..|++ +|.... ..+....|.+|||+|..+..-+.
T Consensus 69 ~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~~-----~~r~~~~~~iillTDG~~~~d~~----------------- 123 (194)
T 1mf7_A 69 RSLVKPITQLLGR---THTATGIRKVVRELFNITN-----GARKNAFKILVVITDGEKFGDPL----------------- 123 (194)
T ss_dssp HHHHTTCCCCCSC---BCHHHHHHHHHHTTTSGGG-----TCCTTSEEEEEEEESSCCBSCSS-----------------
T ss_pred HHHHHhCcCCCCC---chHHHHHHHHHHHhcCccc-----CCCCCCCeEEEEEcCCCCCCCch-----------------
Confidence 8899999987664 468888999985 554211 01234578999999988762111
Q ss_pred hhhcccCCCHHHHHHHHhhcCcEEEEeccC
Q 003297 159 AQAESRLSDAETVAKSFVQCSVSLSVICPK 188 (833)
Q Consensus 159 ~~~~~~l~d~e~la~~~~e~~I~LSvIsPr 188 (833)
+.+.+++.+.+++|.+++|.--
T Consensus 124 --------~~~~~~~~~~~~gi~v~~igvG 145 (194)
T 1mf7_A 124 --------GYEDVIPEADREGVIRYVIGVG 145 (194)
T ss_dssp --------CGGGTHHHHHHTTEEEEEEEES
T ss_pred --------hhHHHHHHHHHCCCEEEEEEec
Confidence 2244677889999999997654
No 15
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.79 E-value=5.1e-08 Score=97.76 Aligned_cols=140 Identities=14% Similarity=0.221 Sum_probs=97.2
Q ss_pred CccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCCHHHHHHH
Q 003297 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 82 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~~~fl~~ 82 (833)
..|||||||+++||+. |+.+| +++..+++.|.-+. ...|+|||.|.+... .+..+....+...++..
T Consensus 7 ~~div~vlD~SgSm~~-~~~~k-~~~~~~~~~l~~~~-------~~~~v~lv~F~~~~~----~~~~l~~~~~~~~~~~~ 73 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYP-WDSVT-AFLNDLLKRMDIGP-------KQTQVGIVQYGENVT----HEFNLNKYSSTEEVLVA 73 (213)
T ss_dssp CEEEEEEEECCTTCCC-HHHHH-HHHHHHHTTSCBST-------TSBEEEEEEESSSEE----EEECTTTCSSHHHHHHH
T ss_pred CccEEEEEECCCChhh-HHHHH-HHHHHHHHhcCCCC-------CCeEEEEEEeCCCcc----EEEeccccCCHHHHHHH
Confidence 4799999999999995 56555 45666777664211 248999999987632 11122334678899999
Q ss_pred HccCccCCCCCchhHHHHHHHHHHhc-cccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhh
Q 003297 83 LSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQA 161 (833)
Q Consensus 83 Ld~I~f~GGG~~~~AvaEGLa~AL~~-f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~~~~ 161 (833)
|+.|...||.. ..+.+||..|++. |.... ..+....|.+|||+|-.+..-
T Consensus 74 i~~l~~~~G~~--T~~~~aL~~a~~~l~~~~~-----~~r~~~~~~iillTDG~~~~~---------------------- 124 (213)
T 1pt6_A 74 AKKIVQRGGRQ--TMTALGTDTARKEAFTEAR-----GARRGVKKVMVIVTDGESHDN---------------------- 124 (213)
T ss_dssp HHTCCCCCCSS--CCHHHHHHHHHHTTTSGGG-----TCCTTCEEEEEEEESSCCSCS----------------------
T ss_pred HHhccCCCCCc--ccHHHHHHHHHHHhcCccc-----CCCCCCCeEEEEEcCCCCCCC----------------------
Confidence 99998876632 4577888888875 54211 012346789999998866420
Q ss_pred cccCCCHHHHHHHHhhcCcEEEEeccC
Q 003297 162 ESRLSDAETVAKSFVQCSVSLSVICPK 188 (833)
Q Consensus 162 ~~~l~d~e~la~~~~e~~I~LSvIsPr 188 (833)
.+++.+++.+.+++|.+++|.--
T Consensus 125 ----~~~~~~~~~~~~~gi~i~~igig 147 (213)
T 1pt6_A 125 ----HRLKKVIQDCEDENIQRFSIAIL 147 (213)
T ss_dssp ----HHHHHHHHHHHHTTEEEEEEEEC
T ss_pred ----ccHHHHHHHHHHCCCEEEEEEec
Confidence 13577889999999999998653
No 16
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.78 E-value=1.5e-08 Score=99.59 Aligned_cols=137 Identities=12% Similarity=0.199 Sum_probs=96.4
Q ss_pred CccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCC--CHHHH
Q 003297 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDIF 79 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~--d~~~f 79 (833)
..|||||||+++||+. .|+ .+.+++..+++.|. ....|+|||.|.+... ..++|+. +...+
T Consensus 9 ~~div~vlD~SgSM~~~~~~-~~~~~~~~~~~~l~---------~~~~~v~lv~f~~~~~------~~~~~~~~~~~~~~ 72 (198)
T 1n3y_A 9 EQDIVFLIDGSGSISSRNFA-TMMNFVRAVISQFQ---------RPSTQFSLMQFSNKFQ------THFTFEEFRRSSNP 72 (198)
T ss_dssp CEEEEEEEECCTTSCHHHHH-HHHHHHHHHHTTSC---------TTTEEEEEEEESSSEE------EEECHHHHHHCSSG
T ss_pred CeeEEEEEECCCCCCHHHHH-HHHHHHHHHHHhcC---------CCCcEEEEEEeCCCcc------EEEecCccCCHHHH
Confidence 4799999999999988 566 45566777777764 1147999999998722 2344432 22467
Q ss_pred HHHHccCccCCCCCchhHHHHHHHHHH-hccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003297 80 LHWLSTIPFAGGGFNDAAIAEGLSEAL-MMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 158 (833)
Q Consensus 80 l~~Ld~I~f~GGG~~~~AvaEGLa~AL-~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~ 158 (833)
+.+|+.|...|| ...+.+||..|+ .+|.... .......|.+|||+|-.+..-+
T Consensus 73 ~~~i~~l~~~~g---~T~~~~al~~a~~~l~~~~~-----~~r~~~~~~iillTDG~~~~~~------------------ 126 (198)
T 1n3y_A 73 LSLLASVHQLQG---FTYTATAIQNVVHRLFHASY-----GARRDAAKILIVITDGKKEGDS------------------ 126 (198)
T ss_dssp GGGGTTCCCCCS---CBCHHHHHHHHHTTTTSGGG-----TCCTTSEEEEEEEESSCCBSCS------------------
T ss_pred HHHHhcCcCCCC---CchHHHHHHHHHHHHhCccc-----CCCCCCceEEEEECCCCCCCCc------------------
Confidence 788888887665 357888999999 5665311 0123457899999998775211
Q ss_pred hhhcccCCCHHHHHHHHhhcCcEEEEeccC
Q 003297 159 AQAESRLSDAETVAKSFVQCSVSLSVICPK 188 (833)
Q Consensus 159 ~~~~~~l~d~e~la~~~~e~~I~LSvIsPr 188 (833)
.+++.+++.+.+++|.+++|.=-
T Consensus 127 -------~~~~~~~~~~~~~gi~i~~igvG 149 (198)
T 1n3y_A 127 -------LDYKDVIPMADAAGIIRYAIGVG 149 (198)
T ss_dssp -------SCHHHHHHHHHHTTCEEEEEEES
T ss_pred -------ccHHHHHHHHHHCCCEEEEEEcc
Confidence 25678899999999999987543
No 17
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.77 E-value=2.5e-08 Score=96.65 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=98.7
Q ss_pred CccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCCHHHHHHH
Q 003297 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 82 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~~~fl~~ 82 (833)
..|||||||+++||+..|.. +.+++..+++.|-+ ...++|||.|.+... ..++|+.|...+..+
T Consensus 6 ~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~---------~~~~v~lv~f~~~~~------~~~~~~~~~~~~~~~ 69 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVS---------PEMRLSFIVFSSQAT------IILPLTGDRGKISKG 69 (182)
T ss_dssp CEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCC---------TTEEEEEEEESSSEE------EEEEEECCHHHHHHH
T ss_pred ceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcC---------CCceEEEEEeCCCce------EEECCCCCHHHHHHH
Confidence 37999999999999988766 55677777877732 147999999977632 356678888999888
Q ss_pred HccCcc--CCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003297 83 LSTIPF--AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 160 (833)
Q Consensus 83 Ld~I~f--~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~~~ 160 (833)
|+.|.. .+| ...+.+||..|+..+.+.. .....|.+|||+|-.+..-.
T Consensus 70 l~~l~~~~~~g---~T~~~~al~~a~~~l~~~~-------~~~~~~~iiliTDG~~~~~~-------------------- 119 (182)
T 1shu_X 70 LEDLKRVSPVG---ETYIHEGLKLANEQIQKAG-------GLKTSSIIIALTDGKLDGLV-------------------- 119 (182)
T ss_dssp HHHHHTCCCCS---CCCHHHHHHHHHHHHHHHT-------GGGSCEEEEEEECCCCCTTH--------------------
T ss_pred HHhcccCCCCC---CchHHHHHHHHHHHHHhcc-------CCCCCeEEEEECCCCcCCCC--------------------
Confidence 888763 233 3567888888888775421 12456899999998764200
Q ss_pred hcccCCCHHHHHHHHhhcCcEEEEeccC
Q 003297 161 AESRLSDAETVAKSFVQCSVSLSVICPK 188 (833)
Q Consensus 161 ~~~~l~d~e~la~~~~e~~I~LSvIsPr 188 (833)
..+.+.+++.+.+++|.+++|.--
T Consensus 120 ----~~~~~~~~~~~~~~~i~i~~igvg 143 (182)
T 1shu_X 120 ----PSYAEKEAKISRSLGASVYCVGVL 143 (182)
T ss_dssp ----HHHHHHHHHHHHHTTCEEEEEECS
T ss_pred ----chhHHHHHHHHHhCCCEEEEEeCC
Confidence 012466888999999999997654
No 18
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.74 E-value=3.9e-08 Score=102.85 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=100.2
Q ss_pred CccEEEEEeCCccch-HhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCC----HH
Q 003297 3 EKQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKD----VD 77 (833)
Q Consensus 3 ~~dvVFVID~Tasmg-~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d----~~ 77 (833)
..|||||||+++||+ ..|....++++..+++.|.-++ ...++|||.|.+..- ..+.++.+ ..
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~-------~~~rvglv~Fs~~~~------~~~~l~~~~~~~~~ 84 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSR-------DTINLYMNLFGSYTT------ELIRLGSGQSIDKR 84 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCT-------TSEEEEEEEESSSEE------EEECTTSHHHHCHH
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCC-------CCcEEEEEEecCCcc------eEEecCCCCccCHH
Confidence 479999999999999 4565456778888888886321 148999999988622 34555543 68
Q ss_pred HHHHHHccCc---cCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccc
Q 003297 78 IFLHWLSTIP---FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQN 154 (833)
Q Consensus 78 ~fl~~Ld~I~---f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~ 154 (833)
.++..|+.|. ..||| -.+.+||..|..+|.... .+....|.+|||+|-.+.. +
T Consensus 85 ~~~~~i~~l~~~~~~~G~---T~~~~AL~~a~~~l~~~~------~r~~~~~~iIllTDG~~~d---~------------ 140 (266)
T 4hqo_A 85 QALSKVTELRKTYTPYGT---TSMTAALDEVQKHLNDRV------NREKAIQLVILMTDGVPNS---K------------ 140 (266)
T ss_dssp HHHHHHHHHHHHCCCCSC---CCHHHHHHHHHHHHHTTC------SCTTSEEEEEEEECSCCSC---H------------
T ss_pred HHHHHHHHhhhccCCCCC---CCHHHHHHHHHHHHhhcc------ccCCCCeEEEEEccCCCCC---c------------
Confidence 8899999986 55554 456778888887776421 1234578999999887651 0
Q ss_pred cchhhhhcccCCCHHHHHHHHhhcCcEEEEeccCc
Q 003297 155 ENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 189 (833)
Q Consensus 155 e~~~~~~~~~l~d~e~la~~~~e~~I~LSvIsPrk 189 (833)
.+....++.+.+.+|.+++|.=-.
T Consensus 141 -----------~~~~~~a~~l~~~gi~i~~iGiG~ 164 (266)
T 4hqo_A 141 -----------YRALEVANKLKQRNVRLAVIGIGQ 164 (266)
T ss_dssp -----------HHHHHHHHHHHHTTCEEEEEECSS
T ss_pred -----------hHHHHHHHHHHHCCCEEEEEecCc
Confidence 145778999999999999976544
No 19
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.70 E-value=2.2e-07 Score=92.66 Aligned_cols=123 Identities=14% Similarity=0.162 Sum_probs=85.1
Q ss_pred CccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCcccccee-eccCCCCHHHHH
Q 003297 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQ-RSGWTKDVDIFL 80 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~-~~gfT~d~~~fl 80 (833)
..|||||||+++||+. .|+.+| +++..+++.|.... ...++|||.|.+... ..+. ...++.|...+.
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k-~~~~~~i~~l~~~~-------~~~~v~lv~f~~~~~---~~~~~~~~~~~~~~~~~ 83 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAK-KSLVNLIEKVASYG-------VKPRYGLVTYATYPK---IWVKVSEADSSNADWVT 83 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHH-HHHHHHHHHHHTTT-------CCCEEEEEEESSSEE---EEECTTSGGGGCHHHHH
T ss_pred ceeEEEEEeCCCCCchHHHHHHH-HHHHHHHHHHhcCC-------CCceEEEEEecCccc---eeeccccCCCCCHHHHH
Confidence 4799999999999987 777665 56677777776421 136999999988632 1111 125577889999
Q ss_pred HHHccCccCCCC-CchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCC
Q 003297 81 HWLSTIPFAGGG-FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 137 (833)
Q Consensus 81 ~~Ld~I~f~GGG-~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~ 137 (833)
..|++|...++. .+...+.+||..|+..+.+.... .+.......|.+|||+|-.+.
T Consensus 84 ~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~-~~~~~~~~~~~iillTDG~~~ 140 (223)
T 1q0p_A 84 KQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV-PPEGWNRTRHVIILMTDGLHN 140 (223)
T ss_dssp HHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSS-CCTTGGGCEEEEEEEECSCCC
T ss_pred HHHHhcccccccCCCCccHHHHHHHHHHHhhccccc-cccccccCCeEEEEECCCCCC
Confidence 999999986432 23467888999999877643211 111112467889999998775
No 20
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=2.9e-07 Score=97.73 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=110.6
Q ss_pred EEEEEeCCccch--Hh----HHHHHHHHHHHHHHHhhc-ccCccCccCCccEEEEEEeecCCCccccceeeccCCCCHHH
Q 003297 6 LIVAVEGTAAMG--PY----WQSIVSDYLEKIIRCFCV-NELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDI 78 (833)
Q Consensus 6 vVFVID~Tasmg--~y----~~~lkt~YI~p~le~f~~-~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~~~ 78 (833)
+|||||.+.+|. +| |+ +.++.+..+++.+.. .+ ..++|||+|.+..+ . ....+|.|..+
T Consensus 6 tViviD~S~SM~~~D~~PsRl~-a~k~Av~~li~~~~~~nP--------ed~VGLVtfag~~~----~-vl~plT~D~~~ 71 (268)
T 4b4t_W 6 TVLVIDNSEYSRNGDFPRTRFE-AQIDSVEFIFQAKRNSNP--------ENTVGLISGAGANP----R-VLSTFTAEFGK 71 (268)
T ss_dssp EEEEECCSSTTSSTTSSSCHHH-HHHHHHHHHHHHHHHHCT--------TCEEEEEECCTTSC----E-EEEEEESCHHH
T ss_pred EEEEEECCHHHhCCCCCCcHHH-HHHHHHHHHHHHHhhCCC--------cceEEEEEecCCcc----e-eccCCcchHHH
Confidence 899999999995 23 34 334556666665532 11 25999999987632 2 23578999999
Q ss_pred HHHHHccCccCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003297 79 FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 158 (833)
Q Consensus 79 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~ 158 (833)
++..|++|+..|+ .++..||..|+..+..... ....+++||+.+++-..
T Consensus 72 il~aL~~l~~~G~----T~l~~gL~~A~~aLk~~~~-------k~~~~rIIlf~ds~~~~-------------------- 120 (268)
T 4b4t_W 72 ILAGLHDTQIEGK----LHMATALQIAQLTLKHRQN-------KVQHQRIVAFVCSPISD-------------------- 120 (268)
T ss_dssp HHHHHTTCCCCSC----CCHHHHHHHHHHHHHTCSC-------TTSEEEEEEEECSCCSS--------------------
T ss_pred HHHHhhhcCcCCC----CChHHHHHHHHHHHHhccc-------CCCceEEEEEECCCCCC--------------------
Confidence 9999999996533 4677777777776654321 23456778887775321
Q ss_pred hhhcccCCCHHHHHHHHhhcCcEEEEeccC----cchhHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEee
Q 003297 159 AQAESRLSDAETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLIS 224 (833)
Q Consensus 159 ~~~~~~l~d~e~la~~~~e~~I~LSvIsPr----klp~l~~lf~ka~~~~~~~~~~~~~ak~p~hlVLls 224 (833)
+-.+++.+|+.+.++||.|+||.=- .-.+|++|.++..++. -+-.|||-|.
T Consensus 121 -----~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~----------~~~s~~v~v~ 175 (268)
T 4b4t_W 121 -----SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQ----------EETSHLLTVT 175 (268)
T ss_dssp -----CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSST----------TTSCEEEEEC
T ss_pred -----CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCC----------CCceeEEEeC
Confidence 0125789999999999999998743 5688999999988752 1236888883
No 21
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.65 E-value=8.6e-08 Score=100.68 Aligned_cols=139 Identities=12% Similarity=0.224 Sum_probs=94.9
Q ss_pred CccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCC----CHH
Q 003297 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DVD 77 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~----d~~ 77 (833)
..|||||||+++||+. .|....++.+..+++.|..+. ...|+|||.|.+... ..+.++. |..
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~-------~~~rvglv~Fs~~~~------~~~~l~~~~~~~~~ 87 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLND-------NAIHLYASVFSNNAR------EIIRLHSDASKNKE 87 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCT-------TSEEEEEEEEETTEE------EEEEECSSCSSCHH
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCC-------CCcEEEEEEcCCCce------EEEEccccCccCHH
Confidence 4799999999999985 453444566677777665321 248999999987632 2233332 478
Q ss_pred HHHHHHccCc---cCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccc
Q 003297 78 IFLHWLSTIP---FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQN 154 (833)
Q Consensus 78 ~fl~~Ld~I~---f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~ 154 (833)
.++..|+.|. +.||| -.+.+||..|+..|.... .+....|.+|||+|-.+.. +
T Consensus 88 ~l~~~i~~l~~~~~~~G~---T~~~~aL~~a~~~l~~~~------~r~~~~~~iillTDG~~~d---~------------ 143 (281)
T 4hqf_A 88 KALIIIKSLLSTNLPYGK---TSLTDALLQVRKHLNDRI------NRENANQLVVILTDGIPDS---I------------ 143 (281)
T ss_dssp HHHHHHHHHHHTTGGGCS---CCHHHHHHHHHHHHHTSC------CCTTCEEEEEEEESSCCSC---H------------
T ss_pred HHHHHHHHHhhccCCCCC---ccHHHHHHHHHHHHHhcc------CCCCCCEEEEEEecCCCCC---c------------
Confidence 8888888886 45554 457788888877665321 1224578999999876641 0
Q ss_pred cchhhhhcccCCCHHHHHHHHhhcCcEEEEeccCc
Q 003297 155 ENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 189 (833)
Q Consensus 155 e~~~~~~~~~l~d~e~la~~~~e~~I~LSvIsPrk 189 (833)
.+....++.+.++||.+++|.=-.
T Consensus 144 -----------~~~~~~~~~l~~~gv~i~~igiG~ 167 (281)
T 4hqf_A 144 -----------QDSLKESRKLSDRGVKIAVFGIGQ 167 (281)
T ss_dssp -----------HHHHHHHHHHHHTTCEEEEEEESS
T ss_pred -----------HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 145778889999999999976543
No 22
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.63 E-value=1.6e-07 Score=93.67 Aligned_cols=114 Identities=13% Similarity=0.249 Sum_probs=83.4
Q ss_pred CccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCC--CCHHHH
Q 003297 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDIF 79 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT--~d~~~f 79 (833)
..|||||||++++|+. .|+.+| +++..+++.|.-++ ...|+|||.|.+... ..+.|+ .|...+
T Consensus 21 ~~DivfvlD~S~Sm~~~~~~~~k-~~~~~~~~~l~~~~-------~~~rv~vv~fs~~~~------~~~~l~~~~~~~~~ 86 (199)
T 3zqk_A 21 VLDVAFVLEGSDKIGEADFNRSK-EFMEEVIQRMDVGQ-------DSIHVTVLQYSYMVT------VEYPFSEAQSKGDI 86 (199)
T ss_dssp CCEEEEEEECCTTTCHHHHHHHH-HHHHHHHHHSCBST-------TSBEEEEEEESSSEE------EEECTTSCCCHHHH
T ss_pred CcCEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcCCCC-------CceEEEEEEECCccc------EEEecCCcCCHHHH
Confidence 3899999999999996 477766 77788899886321 148999999998632 233443 588999
Q ss_pred HHHHccCccCCCCCchhHHHHHHHHHHh-ccccCCCCCCCCCCcCCCcEEEEeecCCCC
Q 003297 80 LHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPH 137 (833)
Q Consensus 80 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qk~cILIa~SpP~ 137 (833)
+..|++|.+.||+. -++.+||..|++ +|.... ..+....|.+|||+|..+.
T Consensus 87 ~~~i~~l~~~gg~~--T~~~~aL~~a~~~l~~~~~-----g~r~~~~~~iillTDG~~~ 138 (199)
T 3zqk_A 87 LQRLREIRYQGGNR--TNTGLALRYLSDHSFLVSQ-----GDREQAPNLVYMVTGNPAS 138 (199)
T ss_dssp HHHHHHCCCCCCSC--CCHHHHHHHCCCCCTCGGG-----TCCTTSCEEEEEEECSCCS
T ss_pred HHHHHhCcCCCCCc--ChHHHHHHHHHHHhhCccc-----CCCCCCCeEEEEEeCCCCc
Confidence 99999999987632 457888888887 453211 1123567899999998754
No 23
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.57 E-value=1.3e-06 Score=88.06 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=104.3
Q ss_pred ccEEEEEeCCccchH------hHHHHHHHHHHHHHH-HhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCCH
Q 003297 4 KQLIVAVEGTAAMGP------YWQSIVSDYLEKIIR-CFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDV 76 (833)
Q Consensus 4 ~dvVFVID~Tasmg~------y~~~lkt~YI~p~le-~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~ 76 (833)
..||||||.+.+|.. -|+..| ..+..+++ ++..++ ..++|||+|.+... + ...++|.|.
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak-~~~~~~~~~~~~~~~--------~d~vGLV~fa~~~a---~--~~~plT~d~ 68 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQK-DTVHMIFNQKINDNP--------ENMCGLMTIGDNSP---Q--VLSTLTRDY 68 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHH-HHHHHHHHHHHHHCT--------TCEEEEEECCTTSC---C--EEEEEESCH
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHH-HHHHHHHHHHHhcCC--------CCeEEEEEEcCCCc---E--EecCCCCCH
Confidence 368999999999972 234443 33444333 333222 25999999998523 2 235789999
Q ss_pred HHHHHHHccCccCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcE-EEEeecCCCCCCCCCcccCCcccccccc
Q 003297 77 DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRH-CILVAASNPHPLPTPVYRPQMQNLDQNE 155 (833)
Q Consensus 77 ~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~-cILIa~SpP~~lp~pvy~p~~~~~~~~e 155 (833)
.+++..|+.|...| ..++.+||..|+..+..... ....++ +|++++.- . +
T Consensus 69 ~~i~~~L~~l~~~g----~t~l~~aL~~A~~~l~~~~~-------~~~~~riiil~~~~~-~-----~------------ 119 (192)
T 2x5n_A 69 GKFLSAMHDLPVRG----NAKFGDGIQIAQLALKHREN-------KIQRQRIVAFVGSPI-V-----E------------ 119 (192)
T ss_dssp HHHHHHHTTCCCCS----CCCHHHHHHHHHHHHHTCSC-------TTSEEEEEEEECSCC-S-----S------------
T ss_pred HHHHHHHHcCCCCC----CchHHHHHHHHHHHHHhccc-------cCCCceEEEEEECCC-C-----C------------
Confidence 99999999988653 26889999999988864221 112233 45554311 0 0
Q ss_pred chhhhhcccCCCHHHHHHHHhhcCcEEEEeccCc----chhHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEeeccc
Q 003297 156 NNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ----LPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENF 227 (833)
Q Consensus 156 ~~~~~~~~~l~d~e~la~~~~e~~I~LSvIsPrk----lp~l~~lf~ka~~~~~~~~~~~~~ak~p~hlVLlsg~~ 227 (833)
...+.+.+++.+++++|.+++|.=-. -. |++|.++.+.+. -.|||-+..+.
T Consensus 120 --------~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n~~~------------~s~~~~~~~~~ 174 (192)
T 2x5n_A 120 --------DEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAANSSD------------SCHLVSIPPSP 174 (192)
T ss_dssp --------CHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHCSTT------------CCEEEEECCCS
T ss_pred --------CchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhccCCC------------ceEEEEecCcc
Confidence 00256789999999999999976432 25 999998876332 25888776653
No 24
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.52 E-value=5.5e-07 Score=101.09 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=83.1
Q ss_pred ccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCcccccee-eccCCCCHHHHHH
Q 003297 4 KQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQ-RSGWTKDVDIFLH 81 (833)
Q Consensus 4 ~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~-~~gfT~d~~~fl~ 81 (833)
.|||||||.++||+. .|+.+| +.+..+++.|.... ...++|||.|.+... ..+. ...++.|.+.++.
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k-~~~~~~~~~l~~~~-------~~~~v~lv~f~~~~~---~~~~~~~~~~~~~~~~~~ 70 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAK-KVLVNLIEKVASYG-------VKPRYGLVTYATYPK---IWVKVSEADSSNADWVTK 70 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHH-HHHHHHHHHHHHTT-------CCCEEEEEEESSSEE---EEECTTSGGGGCHHHHHH
T ss_pred eeEEEEEECCCCcchhhHHHHH-HHHHHHHHHhhccC-------CCceEEEEEecCCce---EeeccccccccCHHHHHH
Confidence 699999999999975 566555 45677777775321 137999999986532 1111 2256789999999
Q ss_pred HHccCccCCCCC-chhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCC
Q 003297 82 WLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 137 (833)
Q Consensus 82 ~Ld~I~f~GGG~-~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~ 137 (833)
.|++|.+.|+.. +...+.+||..|+.++.+... ..+.......|.+|||+|-.+.
T Consensus 71 ~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~-~~~~~~~~~~~~iillTDG~~~ 126 (497)
T 1rrk_A 71 QLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD-VPPEGWNRTRHVIILMTDGLHN 126 (497)
T ss_dssp HHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC-------CGGGCEEEEEEEECSCCC
T ss_pred HHHhCcCccccccCccCHHHHHHHHHHHhhhhhc-cccccccccceEEEEEeCCCcc
Confidence 999999865432 347788999999988754221 1111223467899999998765
No 25
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.51 E-value=5e-07 Score=102.01 Aligned_cols=121 Identities=10% Similarity=0.125 Sum_probs=81.9
Q ss_pred CccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCC----CCHH
Q 003297 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWT----KDVD 77 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT----~d~~ 77 (833)
..|||||||+++||+. .|+.+ ++.|..+++.|.... ...|+|||.|.+... ..++++ .|.+
T Consensus 9 ~~divfvlD~SgSM~~~~~~~~-k~~~~~l~~~l~~~~-------~~~rv~lv~f~~~~~------~~~~l~~~~~~~~~ 74 (509)
T 2odp_A 9 HLNLYLLLDASQSVSENDFLIF-KESASLMVDRIFSFE-------INVSVAIITFASEPK------VLMSVLNDNSRDMT 74 (509)
T ss_dssp EEEEEEEEECSTTSCHHHHHHH-HHHHHHHHHHHHTTC-------CCEEEEEEEESSSEE------EEECTTSGGGGCHH
T ss_pred CeeEEEEEeCCCccchhhHHHH-HHHHHHHHHHhhccC-------CCceEEEEEccCCCc------eeEeccCCCCCCHH
Confidence 4899999999999987 56555 566778888885311 147999999977532 233444 4999
Q ss_pred HHHHHHccCccCCCCC-chhHHHHHHHHHHhccccCCCC--CCCCCCcCCCcEEEEeecCCCC
Q 003297 78 IFLHWLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPNG--SQNQQNVDGQRHCILVAASNPH 137 (833)
Q Consensus 78 ~fl~~Ld~I~f~GGG~-~~~AvaEGLa~AL~~f~~~~~~--~~~~~~~~~qk~cILIa~SpP~ 137 (833)
+++..|++|.+.++.. +...+.+||..|++++...... ..........|.+|||+|-.+.
T Consensus 75 ~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~ 137 (509)
T 2odp_A 75 EVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSN 137 (509)
T ss_dssp HHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCC
T ss_pred HHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCcc
Confidence 9999999999986432 3567788888888777321100 0000011246888999998765
No 26
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.45 E-value=7.5e-07 Score=104.92 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=83.9
Q ss_pred ccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCC----CHHH
Q 003297 4 KQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DVDI 78 (833)
Q Consensus 4 ~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~----d~~~ 78 (833)
.|||||||+++||+. .|+.+| +.+..+++.|..++ .+.|||||.|.+..- ..+.++. |.+.
T Consensus 244 ~div~vlD~SgSM~~~~~~~~k-~~~~~~i~~l~~~~-------~~~rv~lv~f~~~~~------~~~~l~~~~~~~~~~ 309 (741)
T 3hrz_D 244 MNIYLVLDGSGSIGASDFTGAK-KCLVNLIEKVASYG-------VKPRYGLVTYATYPK------IWVKVSEADSSNADW 309 (741)
T ss_dssp EEEEEEEECSTTTCHHHHHHHH-HHHHHHHHHHHHTT-------CCCEEEEEEESSSEE------EEECTTSGGGGCHHH
T ss_pred eeEEEEeccCCcccccchHHHH-HHHHHHHHhhhccC-------CCceEEEEEeccCCc------eeEeecccCCcCHHH
Confidence 799999999999955 477664 56788888887422 147999999987532 3455555 8999
Q ss_pred HHHHHccCccCCCC-CchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCC
Q 003297 79 FLHWLSTIPFAGGG-FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 137 (833)
Q Consensus 79 fl~~Ld~I~f~GGG-~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~ 137 (833)
+++.|++|.+.++. .+.-++.+||..|++++.+.... .+.......|.+|||+|--+.
T Consensus 310 ~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~-~~~~~~~~~~~iillTDG~~n 368 (741)
T 3hrz_D 310 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV-PPEGWNRTRHVIILMTDGLHN 368 (741)
T ss_dssp HHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--C-CCTTGGGEEEEEEEEECSCCC
T ss_pred HHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhc-cccchhccCeEEEEECCCccc
Confidence 99999999984332 12356888999999877432211 122334567889999998665
No 27
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.38 E-value=2e-06 Score=84.21 Aligned_cols=111 Identities=12% Similarity=0.181 Sum_probs=77.0
Q ss_pred CccEEEEEeCCccchH-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCC--HHHH
Q 003297 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKD--VDIF 79 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d--~~~f 79 (833)
..|||||||+++||+. .|+.+| +++..+++.|.. ..+|+|||.|.+... ..++|+.. ...+
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k-~~~~~~~~~l~~---------~~~rv~vv~fs~~~~------~~~~l~~~~~~~~~ 65 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKIL-DFMKDVMKKCSN---------TSYQFAAVQFSTSYK------TEFDFSDYVKRKDP 65 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHH-HHHHHHHHHTTT---------SSEEEEEEEESSSEE------EEECHHHHHHHCCH
T ss_pred CccEEEEEeCCCCCCHHHHHHHH-HHHHHHHHHhCC---------CCeEEEEEEECCcee------EEEcCcccCCHHHH
Confidence 4799999999999987 476654 667778888731 137999999987632 23455532 2246
Q ss_pred HHHHccCccCCCCCchhHHHHHHHHHHh-ccccCCCCCCCCCCcCCCcEEEEeecCCCC
Q 003297 80 LHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPH 137 (833)
Q Consensus 80 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qk~cILIa~SpP~ 137 (833)
...++.|...+|| -++.+||..|++ +|.... ..+....|.+|||+|-.+.
T Consensus 66 ~~~~~~i~~~~g~---T~~~~aL~~a~~~~~~~~~-----g~r~~~~~~iillTDG~~~ 116 (179)
T 1mjn_A 66 DALLKHVKHMLLL---TNTFGAINYVATEVFREEL-----GARPDATKVLIIITDGEAT 116 (179)
T ss_dssp HHHHTTCCCCCBC---CCHHHHHHHHHHHTSSGGG-----TCCTTSEEEEEEEESSCCS
T ss_pred HHHHHhcccCCCC---ChHHHHHHHHHHHhccccc-----CCCCCCCeEEEEEcCCCCC
Confidence 6778888877654 578889999984 665311 1123457899999998764
No 28
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.26 E-value=1.3e-05 Score=91.06 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=76.3
Q ss_pred CccEEEEEeCCccch--H-hHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCC------
Q 003297 3 EKQLIVAVEGTAAMG--P-YWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWT------ 73 (833)
Q Consensus 3 ~~dvVFVID~Tasmg--~-y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT------ 73 (833)
..|||||||+++||. . -|+.+| +.+..+++.|.. ..+|+||.|.+... ..+++|
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak-~a~~~ll~~L~~----------~drv~lV~Fs~~a~------~~~p~t~~l~~~ 139 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAK-EATKVAIDTLTD----------GAFFAVVAGTEGAR------VVYPTGGQLLRA 139 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHH-HHHHHHHHHSCT----------TCEEEEEEESSSEE------EEESSSSSCEEC
T ss_pred CceEEEEEEcCcccCCCCchHHHHH-HHHHHHHHhCCC----------CCEEEEEEEcCceE------EEecCCcccccC
Confidence 389999999999998 3 355444 445666776653 35999999987632 233333
Q ss_pred --CCHHHHHHHHccCccCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCC
Q 003297 74 --KDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 137 (833)
Q Consensus 74 --~d~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~ 137 (833)
.|...+..+|++|...|| -.+.+||..|+.+|... ....|++|||+|-.+.
T Consensus 140 ~~~~~~~l~~~I~~L~~~Gg----T~l~~aL~~A~~~l~~~---------~~~~~~IILLTDG~~~ 192 (464)
T 4fx5_A 140 DYQSRAAAKEAVGRLHANGG----TAMGRWLAQAGRIFDTA---------PSAIKHAILLTDGKDE 192 (464)
T ss_dssp SHHHHHHHHHHHHTCCCCSC----CCHHHHHHHHHHHHTTC---------TTSEEEEEEEESSCCT
T ss_pred CHHHHHHHHHHHHcCCCCCC----CcHHHHHHHHHHHHhcC---------CCCCCEEEEEcCCCCC
Confidence 678899999999996443 56889999999988642 1345899999988664
No 29
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=98.20 E-value=2.4e-06 Score=106.07 Aligned_cols=137 Identities=12% Similarity=0.200 Sum_probs=101.5
Q ss_pred ccEEEEEeCCccchHh-HHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCC--CHHHHH
Q 003297 4 KQLIVAVEGTAAMGPY-WQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDIFL 80 (833)
Q Consensus 4 ~dvVFVID~Tasmg~y-~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~--d~~~fl 80 (833)
.|||||||+++||+.. |+.+| +++..+++.|.. ...|+|||.|.+... ..+.++. |...++
T Consensus 131 ~DIvfvlD~SgSm~~~~f~~~k-~fv~~lv~~~~~---------~~~rVglV~Fs~~~~------~~~~lt~~~~~~~l~ 194 (1095)
T 3k6s_A 131 QDIVFLIDGSGSISSRNFATMM-NFVRAVISQFQR---------PSTQFSLMQFSNKFQ------THFTFEEFRRSSNPL 194 (1095)
T ss_dssp EEEEEEEECCTTSCSHHHHHHH-HHHHHHHHSSCS---------SSEEEEEEEESSSEE------EEECSHHHHSCSCGG
T ss_pred ccEEEEEcCCCCCChhHHHHHH-HHHHHHHHhccc---------cccEEEEEEECCeEE------EEecCcccCCHHHHH
Confidence 7999999999999986 77665 667888888862 137999999987522 3455553 566788
Q ss_pred HHHccCccCCCCCchhHHHHHHHHHHh-ccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003297 81 HWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 159 (833)
Q Consensus 81 ~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~~~ 159 (833)
..++.|...||| -++.+||..|++ +|... . ..+....|.+|||+|-.+..-+
T Consensus 195 ~ai~~i~~~gG~---T~~g~AL~~a~~~lf~~~-~----g~R~~~~kviIllTDG~~~~d~------------------- 247 (1095)
T 3k6s_A 195 SLLASVHQLQGF---TYTATAIQNVVHRLFHAS-Y----GARRDAAKILIVITDGKKEGDS------------------- 247 (1095)
T ss_dssp GGTTTCCCCCSC---BCHHHHHHHHHTTTTSTT-T----TCCSSSEEEEEEEESSCCBSCS-------------------
T ss_pred HHHhhhhcccCC---ChHHHHHHHHHHhhcccc-c----cCCCCCCeEEEEEeCCCcCCCc-------------------
Confidence 889999888764 578899999987 45421 1 1224567899999988774211
Q ss_pred hhcccCCCHHHHHHHHhhcCcEEEEeccCc
Q 003297 160 QAESRLSDAETVAKSFVQCSVSLSVICPKQ 189 (833)
Q Consensus 160 ~~~~~l~d~e~la~~~~e~~I~LSvIsPrk 189 (833)
.+.+.+|+.+.+.+|.+++|.-..
T Consensus 248 ------~~~~~~a~~~r~~GI~i~aIGVG~ 271 (1095)
T 3k6s_A 248 ------LDYKDVIPMADAAGIIRYAIGVGL 271 (1095)
T ss_dssp ------SCHHHHHHHHHHHCEEECCEEBSS
T ss_pred ------hhHHHHHHHHHHCCCEEEEEeccc
Confidence 256788999999999999987654
No 30
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.10 E-value=1.1e-05 Score=78.74 Aligned_cols=110 Identities=17% Similarity=0.185 Sum_probs=74.6
Q ss_pred CccEEEEEeCCccc-hHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCCHHHHHH
Q 003297 3 EKQLIVAVEGTAAM-GPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 81 (833)
Q Consensus 3 ~~dvVFVID~Tasm-g~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~~~fl~ 81 (833)
.+|||||||+++|| +..|+.+|. .+..+++.+. ....+++||.|.+... ...+++|.|...+..
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~-~~~~~~~~~~---------~~~~~v~lv~f~~~~~-----~~~~~~~~~~~~~~~ 69 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKG-AVELLLGRAY---------AARDHVSLITFRGTAA-----QVLLQPSRSLTQTKR 69 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHH-HHHHHHHHSC---------TTTSCCCEEEESBSCC-----CBCTTTCSCHHHHHH
T ss_pred CeEEEEEEECCCCCCchHHHHHHH-HHHHHHHHhc---------CCCcEEEEEEECCCCc-----eEecCCCCCHHHHHH
Confidence 48999999999999 455555554 3455555441 1136999999987422 134668899999999
Q ss_pred HHccCccCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCC
Q 003297 82 WLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP 138 (833)
Q Consensus 82 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~ 138 (833)
+|+.+...|| -.+.+||..|+.++.... .....+.+|||+|-.+..
T Consensus 70 ~i~~l~~~g~----T~~~~al~~a~~~l~~~~-------~~~~~~~ivliTDG~~~~ 115 (189)
T 2x31_A 70 QLQGLPGGGG----TPLASGMEMAMVTAKQAR-------SRGMTPTIALLTDGRGNI 115 (189)
T ss_dssp HHHHCCCCBC----CCCHHHHHHHHHHHHTCT-------TTCSSEEEEECCBSCCSS
T ss_pred HHhcCCCCCC----CCHHHHHHHHHHHHHhcc-------CCCCceEEEEECCCCCCC
Confidence 9999986543 345677777777765321 113568999999987753
No 31
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=98.00 E-value=6.2e-05 Score=87.24 Aligned_cols=137 Identities=17% Similarity=0.256 Sum_probs=86.6
Q ss_pred ccEEEEEeCCccchH-------hHHHHHHHHHHHHHHHh-hcccCccCccCCccEEEEEEeecCCCc---------cccc
Q 003297 4 KQLIVAVEGTAAMGP-------YWQSIVSDYLEKIIRCF-CVNELAGQTSASNVELSLVTFNTHGSY---------CACL 66 (833)
Q Consensus 4 ~dvVFVID~Tasmg~-------y~~~lkt~YI~p~le~f-~~~~l~~~~~g~~~~~gLV~Y~d~~~~---------~~~l 66 (833)
-+||||||.+.+|.. .|+.++. ++..+++.. ..++ .-++|||+|++.... ...+
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~-~i~~~i~~ki~~~~--------~D~vGlv~f~~~~~~~plt~d~~y~~i~ 78 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKK-VITMFVQRQVFAEN--------KDEIALVLFGTDGTDNPLSGGDQYQNIT 78 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHH-HHHHHHHHHHHTTC--------CCEEEEEEESCSSCBSTTCTTTCSTTEE
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHH-HHHHHHHHHhcCCC--------CCEEEEEEEccCCCCCccccccCCCceE
Confidence 689999999999974 4555554 455555531 1111 359999999987531 1111
Q ss_pred eeeccCC-CCHHHHHHHHcc-CccCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecC-CCCCCCCCc
Q 003297 67 VQRSGWT-KDVDIFLHWLST-IPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS-NPHPLPTPV 143 (833)
Q Consensus 67 v~~~gfT-~d~~~fl~~Ld~-I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~S-pP~~lp~pv 143 (833)
+. ...+ .+.. .+..|+. |. +|....++.+||..|+.+|...... .....|++||++|- .|+.
T Consensus 79 vl-~~l~~~~~~-~l~~l~~~l~---~~~~~t~i~~al~~A~~~l~~~~~~-----~k~~~krIiLlTDg~~~~~----- 143 (565)
T 1jey_B 79 VH-RHLMLPDFD-LLEDIESKIQ---PGSQQADFLDALIVSMDVIQHETIG-----KKFEKRHIEIFTDLSSRFS----- 143 (565)
T ss_dssp EE-EEEECCCHH-HHHHHHTTCC---CCSSCCCHHHHHHHHHHHHHHHSSS-----SCCSEEEEEEECCCCSCCC-----
T ss_pred Ee-ecCCCCCHH-HHHHHHhhcc---CCCccccHHHHHHHHHHHHHHHhhc-----ccccccEEEEEeCCCCCCC-----
Confidence 11 1222 3444 4455665 64 2323567999999999999642100 11135899999965 3432
Q ss_pred ccCCccccccccchhhhhcccCCCHHHHHHHHhhcCcEEE-Ee
Q 003297 144 YRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLS-VI 185 (833)
Q Consensus 144 y~p~~~~~~~~e~~~~~~~~~l~d~e~la~~~~e~~I~LS-vI 185 (833)
..+++.+|+.+.+.||.|+ +|
T Consensus 144 ---------------------~~~~~~~a~~l~~~gI~i~~vi 165 (565)
T 1jey_B 144 ---------------------KSQLDIIIHSLKKCDISLQFFL 165 (565)
T ss_dssp ---------------------CTTHHHHHHHHHHTTEEEEEEE
T ss_pred ---------------------HHHHHHHHHHHHhcCcEEEEEe
Confidence 0267899999999999999 66
No 32
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.85 E-value=9.6e-05 Score=86.48 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=87.3
Q ss_pred Ccc-EEEEEeCCccchH--------hHHHHHHHHHHHHHH-HhhcccCccCccCCccEEEEEEeecCCC-----ccccce
Q 003297 3 EKQ-LIVAVEGTAAMGP--------YWQSIVSDYLEKIIR-CFCVNELAGQTSASNVELSLVTFNTHGS-----YCACLV 67 (833)
Q Consensus 3 ~~d-vVFVID~Tasmg~--------y~~~lkt~YI~p~le-~f~~~~l~~~~~g~~~~~gLV~Y~d~~~-----~~~~lv 67 (833)
.+| ||||||.+.+|.. .|+.++.- |..++. .+..++ .-++|||+|++... ++..++
T Consensus 34 ~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~-v~~~i~~kii~~~--------~D~vGlVlfgt~~t~n~l~~d~i~v 104 (609)
T 1jey_A 34 GRDSLIFLVDASKAMFESQSEDELTPFDMSIQC-IQSVYISKIISSD--------RDLLAVVFYGTEKDKNSVNFKNIYV 104 (609)
T ss_dssp CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHH-HHHHHHHHHHTTC--------CCEEEEEEESCSSCBSTTCCTTEEE
T ss_pred CceEEEEEEECCHHHcCCCCCCCCChHHHHHHH-HHHHHHHhhCCCC--------CCeEEEEEEccCCCCCcCCCCCeEE
Confidence 455 9999999999976 46666542 233332 222211 25999999999873 222232
Q ss_pred eeccC-CCCHHHHHHHHccCc----------cCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecC-C
Q 003297 68 QRSGW-TKDVDIFLHWLSTIP----------FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS-N 135 (833)
Q Consensus 68 ~~~gf-T~d~~~fl~~Ld~I~----------f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~S-p 135 (833)
.. .+ ..+.+.+ +.|..+. ..|. ....++.+||..|+.+|.... .....|.+|||+|. +
T Consensus 105 ~~-~L~~~~~~~i-k~l~~l~~~~~~~~~~~~~g~-~~~t~l~daL~~a~~~f~~~~-------~k~~~k~IiL~TDg~~ 174 (609)
T 1jey_A 105 LQ-ELDNPGAKRI-LELDQFKGQQGQKRFQDMMGH-GSDYSLSEVLWVCANLFSDVQ-------FKMSHKRIMLFTNEDN 174 (609)
T ss_dssp EE-EEECCCHHHH-HHHHTTSHHHHHHHHHHHHCC-SCCCCHHHHHHHHHHHHHTCS-------SCEEEEEEEEEESCSC
T ss_pred Ee-cCCCCCHHHH-HHHHHHhhcccchhhhhhcCC-CCCCCHHHHHHHHHHHHHhhc-------hhhcCCEEEEEcCCCC
Confidence 22 12 1244433 3333331 1221 235789999999999997421 11247899999985 4
Q ss_pred CCCCCCCcccCCccccccccchhhhhcccCCCHHHHHHHHhhcCcEEEEecc
Q 003297 136 PHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICP 187 (833)
Q Consensus 136 P~~lp~pvy~p~~~~~~~~e~~~~~~~~~l~d~e~la~~~~e~~I~LSvIsP 187 (833)
|+..- . .. ..+++.+|+.+.+.||+|.+|--
T Consensus 175 p~~~~-~-----------------~~---~~~~~~~a~~l~~~gI~i~~igi 205 (609)
T 1jey_A 175 PHGND-S-----------------AK---ASRARTKAGDLRDTGIFLDLMHL 205 (609)
T ss_dssp TTTTC-H-----------------HH---HHHHHHHHHHHHHHTEEEEEEEB
T ss_pred CCCCc-h-----------------HH---HHHHHHHHHHHHhcCcEEEEEec
Confidence 54310 0 00 01468999999999999999843
No 33
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=97.78 E-value=5e-05 Score=79.44 Aligned_cols=93 Identities=13% Similarity=0.206 Sum_probs=67.5
Q ss_pred CccEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCCCHHHHHHH
Q 003297 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 82 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~~~fl~~ 82 (833)
.+||||+||+++||+.-|+.+|.- |..++..|..+. .+.|+|||.|++... +..+...+||++. .+..+
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~a-l~~Ll~sl~~~~-------~~~~VavV~F~~~~~--~~~~ll~pfT~~~-~~~~~ 202 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREA-VRDLALSLKVRS-------GPLAVSVIAFPGKGE--EATRLVQPFSSEV-NVAAL 202 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHH-HHHHHHHHTTSS-------SCEEEEEEEESCSTT--CSCEEEEEEESSC-CHHHH
T ss_pred CCCEEEEEECcccHHHHHHHHHHH-HHHHHHHHhccC-------CCcEEEEEEECCCCc--cceeecCCCCChH-HHHHH
Confidence 489999999999999988888866 455666665321 158999999998853 1222234889988 88889
Q ss_pred HccCccCCCCCchhHHHHHHHHHHhccc
Q 003297 83 LSTIPFAGGGFNDAAIAEGLSEALMMFS 110 (833)
Q Consensus 83 Ld~I~f~GGG~~~~AvaEGLa~AL~~f~ 110 (833)
|+.|.. ||+-- +.+||..|+.+|+
T Consensus 203 l~~L~a-gG~Tp---lg~AL~~A~~~~~ 226 (242)
T 3rag_A 203 EAELVA-RGGTP---TGPAIDHAADLLL 226 (242)
T ss_dssp HHHCCC-CSCCC---HHHHHHHHHHHHH
T ss_pred HhhCCC-CCCCc---HHHHHHHHHHHHH
Confidence 999975 45422 6777777777774
No 34
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=97.20 E-value=0.0011 Score=80.76 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=71.9
Q ss_pred ccEEEEEeCCccchHhHHH------HHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCc----------cc---
Q 003297 4 KQLIVAVEGTAAMGPYWQS------IVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSY----------CA--- 64 (833)
Q Consensus 4 ~dvVFVID~Tasmg~y~~~------lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~----------~~--- 64 (833)
+|||||||.++||...+.. ..++.+..+++.|... ...|+|||.|.+..-. .+
T Consensus 225 ~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~--------~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g 296 (893)
T 2ww8_A 225 LDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSD--------SENRVALVTYASTIFDGTEFTVEKGVADKNG 296 (893)
T ss_dssp EEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTS--------TTCEEEEEEESSSBCBSCEEEEECCEECTTC
T ss_pred ccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcC--------CCcEEEEEEecCccccccccccccccccccc
Confidence 7999999999999876421 1234556666666531 1369999999974210 00
Q ss_pred ---------------cce--e---eccCCCCHHHHH---HHHccCcc--CCC--C--CchhHHHHHHHHHHhccccCCCC
Q 003297 65 ---------------CLV--Q---RSGWTKDVDIFL---HWLSTIPF--AGG--G--FNDAAIAEGLSEALMMFSVAPNG 115 (833)
Q Consensus 65 ---------------~lv--~---~~gfT~d~~~fl---~~Ld~I~f--~GG--G--~~~~AvaEGLa~AL~~f~~~~~~ 115 (833)
+.. . ..+||.|...+. ..|+.+.. .|- - .+.-++.+||..|+++|+...
T Consensus 297 ~~~n~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~-- 374 (893)
T 2ww8_A 297 KRLNDSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQA-- 374 (893)
T ss_dssp CEECCCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHS--
T ss_pred cccccccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhc--
Confidence 000 0 124677886665 45544321 110 0 113568889999999886311
Q ss_pred CCCCCCcCCCcEEEEeecCCCC
Q 003297 116 SQNQQNVDGQRHCILVAASNPH 137 (833)
Q Consensus 116 ~~~~~~~~~qk~cILIa~SpP~ 137 (833)
+....|++|||+|--|.
T Consensus 375 -----~~~~~kvIILLTDG~pt 391 (893)
T 2ww8_A 375 -----RQNSQKVIFHITDGVPT 391 (893)
T ss_dssp -----CSSSEEEEEEEESSCCS
T ss_pred -----ccCCCeEEEEEcCCCCC
Confidence 12346899999998775
No 35
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=95.65 E-value=0.043 Score=63.04 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=55.2
Q ss_pred CccEEEEEeCCccchHh-----HHHHHHHHHHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCC--CC
Q 003297 3 EKQLIVAVEGTAAMGPY-----WQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWT--KD 75 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~y-----~~~lkt~YI~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT--~d 75 (833)
..+|+||||.++||... +.. +.--+.-.+..+.. +-+++||+|.+. + ...+++ .+
T Consensus 368 ~~~v~lvvD~SgSM~~~~~~~~l~~-~~~Aa~l~~~~~~~----------~d~vglv~Fs~~--~-----~~~~~t~~~~ 429 (538)
T 1yvr_A 368 GKRFLLAIDVSASMNQRVLGSILNA-SVVAAAMCMLVART----------EKDSHMVAFSDE--M-----LPCPITVNML 429 (538)
T ss_dssp CCCEEEEEECSGGGGSBSTTSSCBH-HHHHHHHHHHHHHH----------CSSEEEEEESSS--E-----ECCSCCTTSC
T ss_pred CceEEEEEECccccCCCCCCCcHHH-HHHHHHHHHHHhcc----------CCceEEEEECCC--c-----eEcCCCCccc
Confidence 37999999999999742 111 11100111111221 248999999863 1 122333 34
Q ss_pred HHHHHHHHccCccCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCC
Q 003297 76 VDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNP 136 (833)
Q Consensus 76 ~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP 136 (833)
+..++..|+.+ .||| -++.+||..|+..- ...+.+|||+|--.
T Consensus 430 l~~~l~~l~~~--~~Gg---T~i~~aL~~a~~~~-------------~~~~~iIliTDg~~ 472 (538)
T 1yvr_A 430 LHEVVEKMSDI--TMGS---TDCALPMLWAQKTN-------------TAADIFIVFTDCET 472 (538)
T ss_dssp HHHHHHHHTTC--CCSC---CCTTHHHHHHHHTT-------------CCCSEEEEEECCCC
T ss_pred HHHHHHHHhcC--CCCC---CcHHHHHHHHHhcc-------------CCCCEEEEEcCCCC
Confidence 66666777654 3444 33456777776541 12378999997644
No 36
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=94.49 E-value=0.24 Score=60.76 Aligned_cols=109 Identities=13% Similarity=0.187 Sum_probs=63.9
Q ss_pred HHHHHHccCc--cCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccc-
Q 003297 78 IFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQN- 154 (833)
Q Consensus 78 ~fl~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~- 154 (833)
.+...|+.|. |..+.....|..-||.+|+.+++.. --++|+...++|--=| . .|..-+..
T Consensus 402 ~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~------------GGrI~~F~sg~Pt~Gp-G----~l~~re~~~ 464 (926)
T 1m2v_B 402 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV------------GGKIIVVSGTLPNLGI-G----KLQRRNESG 464 (926)
T ss_dssp HHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT------------CEEEEEEESSCCCSST-T----CCCCCCC--
T ss_pred HHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh------------CCEEEEEecCCCCCCC-C----ccccccccc
Confidence 3344555553 5555556788999999999988631 1356666666664322 1 01111111
Q ss_pred ------cchhhhhcccCCCHHHHHHHHhhcCcEEEE-eccCc---chhHHHHHHHhcCCC
Q 003297 155 ------ENNEAQAESRLSDAETVAKSFVQCSVSLSV-ICPKQ---LPKLTAIYNAAKRNP 204 (833)
Q Consensus 155 ------e~~~~~~~~~l~d~e~la~~~~e~~I~LSv-IsPrk---lp~l~~lf~ka~~~~ 204 (833)
|.-+..++.. .-.+.||+.+.+.+|.+.+ +++.. +..|+.|.+..+|..
T Consensus 465 ~~~~~ke~~~ll~~a~-~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v 523 (926)
T 1m2v_B 465 VVNTSKETAQLLSCQD-SFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQT 523 (926)
T ss_dssp --CCTTHHHHHTSCSS-THHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCE
T ss_pred ccCcccchhhhccchH-HHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceE
Confidence 1100111111 1258999999999999999 44443 678888888877663
No 37
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=94.46 E-value=0.54 Score=56.43 Aligned_cols=110 Identities=12% Similarity=0.143 Sum_probs=62.7
Q ss_pred HHHHHHHccCc--cCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccc
Q 003297 77 DIFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQN 154 (833)
Q Consensus 77 ~~fl~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~ 154 (833)
+.+...|+.|. |..+.....|..-||.+|+.++... --++++...++|--=|=. |..-+..
T Consensus 250 ~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~------------GGrI~~F~sg~pt~GpG~-----l~~r~~~ 312 (751)
T 3eh1_A 250 ELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT------------GGRVSVFQTQLPSLGAGL-----LQSREDP 312 (751)
T ss_dssp HHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT------------CEEEEEEECSCCCSSTTC-----CCCCCCS
T ss_pred HHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC------------CCEEEEEecCCCCCCCCc-----ccccccc
Confidence 33444566664 3444445678889999999988521 135555556666432210 1111111
Q ss_pred ------cchhhhhcccCCCHHHHHHHHhhcCcEEEE-eccCc---chhHHHHHHHhcCCC
Q 003297 155 ------ENNEAQAESRLSDAETVAKSFVQCSVSLSV-ICPKQ---LPKLTAIYNAAKRNP 204 (833)
Q Consensus 155 ------e~~~~~~~~~l~d~e~la~~~~e~~I~LSv-IsPrk---lp~l~~lf~ka~~~~ 204 (833)
|.....++.. .=.+.||+.+.+.+|.+.+ +++.. +..|+.|-+..+|..
T Consensus 313 ~~~~~~ke~~~~~~a~-~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v 371 (751)
T 3eh1_A 313 NQRSSTKVVQHLGPAT-DFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCI 371 (751)
T ss_dssp CGGGGSSSCTTCSCSC-SHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCE
T ss_pred ccCCCchhhhhhcchH-HHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceE
Confidence 0001111111 1258999999999999988 55554 577777888777764
No 38
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=94.43 E-value=0.38 Score=58.21 Aligned_cols=107 Identities=12% Similarity=0.167 Sum_probs=61.4
Q ss_pred HHHHccCc--cCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCccccccccch
Q 003297 80 LHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 157 (833)
Q Consensus 80 l~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e~~ 157 (833)
...|+.|. |..+.....|..-||.+|+.++... --++|+...++|--=|= .|..-+..+..
T Consensus 288 ~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~------------GGrI~~F~sg~pt~GpG-----~l~~r~~~~~~ 350 (810)
T 1pcx_A 288 ETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV------------GGKIIVVSGTLPNLGIG-----KLQRRNESGVV 350 (810)
T ss_dssp HHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT------------CEEEEEEESSCCCSSTT-----CCCC-------
T ss_pred HHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc------------CCEEEEEecCCCCCCCC-----ccccccccccc
Confidence 34555553 4545556788999999999988631 13666677777643221 11111111100
Q ss_pred h-------hhhcccCCCHHHHHHHHhhcCcEEEE-eccCc---chhHHHHHHHhcCCC
Q 003297 158 E-------AQAESRLSDAETVAKSFVQCSVSLSV-ICPKQ---LPKLTAIYNAAKRNP 204 (833)
Q Consensus 158 ~-------~~~~~~l~d~e~la~~~~e~~I~LSv-IsPrk---lp~l~~lf~ka~~~~ 204 (833)
+ ..++.. .-.+.||+.+.+.+|.+.+ +++.. +..|+.|-+..+|..
T Consensus 351 ~~~ke~~~l~~~a~-~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v 407 (810)
T 1pcx_A 351 NTSKETAQLLSCQD-SFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQT 407 (810)
T ss_dssp -------------C-CHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCE
T ss_pred Ccccchhhhcccch-HHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEE
Confidence 1 111111 1248999999999999999 44443 577888888877663
No 39
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=94.39 E-value=0.0078 Score=66.53 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=9.1
Q ss_pred HHHHHHHhhc-CcEEEEec
Q 003297 169 ETVAKSFVQC-SVSLSVIC 186 (833)
Q Consensus 169 e~la~~~~e~-~I~LSvIs 186 (833)
+.++++|.++ ||++.++.
T Consensus 21 ~~~~~~F~~~~gi~V~~~~ 39 (449)
T 3iot_A 21 AEVGKKFEKDTGIKVTVEH 39 (449)
T ss_dssp HHHHHHHHHHHSCCEEEEC
T ss_pred HHHHHHHhhccCCEEEEEe
Confidence 4444555443 56665554
No 40
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=93.16 E-value=0.49 Score=56.96 Aligned_cols=110 Identities=10% Similarity=0.058 Sum_probs=62.5
Q ss_pred HHHccCcc-----CCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCcccccccc
Q 003297 81 HWLSTIPF-----AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 155 (833)
Q Consensus 81 ~~Ld~I~f-----~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e 155 (833)
+.|+.|+- ..+.....|...||.+|+.+++... ...--++++...++|-.=|-. |...+.+|
T Consensus 246 ~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~--------~~~GGrI~~F~sg~pt~GpG~-----l~~r~~~~ 312 (769)
T 2nut_A 246 DLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTF--------PNTGARIMMFIGGPATQGPGM-----VVGDELKT 312 (769)
T ss_dssp HHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHS--------CSSCCEEEEEESSCCCSSSSC-----CSCSBTTS
T ss_pred HHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcc--------cCCCcEEEEEeCCCCCCCCCC-----CcCccccc
Confidence 45666643 2233345688999999999886311 112345666666777432211 11112211
Q ss_pred c-----------hhhhhcccCCCHHHHHHHHhhcCcEEEE-eccCc---chhHHHHHHHhcCCC
Q 003297 156 N-----------NEAQAESRLSDAETVAKSFVQCSVSLSV-ICPKQ---LPKLTAIYNAAKRNP 204 (833)
Q Consensus 156 ~-----------~~~~~~~~l~d~e~la~~~~e~~I~LSv-IsPrk---lp~l~~lf~ka~~~~ 204 (833)
. .+..++.. .-.+.+|+.+.+.+|.+.+ +++.. +..|+.|-+..+|.-
T Consensus 313 ~~rs~~d~~ke~~~~~~~a~-~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~ 375 (769)
T 2nut_A 313 PIRSWHDIDKDNAKYVKKGT-KHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYM 375 (769)
T ss_dssp CCCCHHHHHTTCCTTHHHHH-HHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCE
T ss_pred ccccccccccchhhhccchH-HHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceE
Confidence 1 11111111 0147899999999999999 33443 588888888887763
No 41
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=92.37 E-value=0.03 Score=61.85 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhc
Q 003297 26 DYLEKIIRCFCV 37 (833)
Q Consensus 26 ~YI~p~le~f~~ 37 (833)
++++.+++.|+.
T Consensus 18 ~~~~~~~~~F~~ 29 (449)
T 3iot_A 18 NGLAEVGKKFEK 29 (449)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 344555666654
No 42
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=91.76 E-value=1.4 Score=53.16 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCcEEEE-eccCc---chhHHHHHHHhcCCC
Q 003297 168 AETVAKSFVQCSVSLSV-ICPKQ---LPKLTAIYNAAKRNP 204 (833)
Q Consensus 168 ~e~la~~~~e~~I~LSv-IsPrk---lp~l~~lf~ka~~~~ 204 (833)
.+.||+.+.+.+|.+.+ +++-. +..|+.|.+..+|..
T Consensus 356 Y~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 396 (770)
T 3efo_B 356 YDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTL 396 (770)
T ss_dssp HHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred HHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceE
Confidence 58999999999999988 55554 577888888887763
No 43
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=91.13 E-value=1.3 Score=53.23 Aligned_cols=110 Identities=10% Similarity=0.078 Sum_probs=62.4
Q ss_pred HHHccCcc-----CCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCcccCCcccccccc
Q 003297 81 HWLSTIPF-----AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 155 (833)
Q Consensus 81 ~~Ld~I~f-----~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pvy~p~~~~~~~~e 155 (833)
+.|+.|+- ..+.....|..-||.+|+.+++... ...--++++...++|--=|= .|.+-+..|
T Consensus 240 ~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~--------~~~GGrI~~F~sg~pt~GpG-----~l~~r~~~~ 306 (768)
T 1m2o_A 240 QLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCY--------KNIPARIILFASGPGTVAPG-----LIVNSELKD 306 (768)
T ss_dssp HHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHC--------TTSCCEEEEEESSCCCSSSS-----CCSCSBTTS
T ss_pred HHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhcc--------CCCCcEEEEEeCCCCCCCCc-----ccccccccc
Confidence 46666653 2222345688889999998886211 01224566666667643221 111112111
Q ss_pred -----------chhhhhcccCCCHHHHHHHHhhcCcEEEE-eccCc---chhHHHHHHHhcCCC
Q 003297 156 -----------NNEAQAESRLSDAETVAKSFVQCSVSLSV-ICPKQ---LPKLTAIYNAAKRNP 204 (833)
Q Consensus 156 -----------~~~~~~~~~l~d~e~la~~~~e~~I~LSv-IsPrk---lp~l~~lf~ka~~~~ 204 (833)
+.++.++.. .-.+.||+.+.+.+|.+.+ +++.. +..|+.|-+..+|..
T Consensus 307 ~~rs~~d~~k~~~~~~~~a~-~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v 369 (768)
T 1m2o_A 307 PLRSHHDIDSDHAQHYKKAC-KFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVL 369 (768)
T ss_dssp CCCCHHHHHHTCCTTHHHHH-HHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCE
T ss_pred ccccccccccchhhhcCchH-HHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceE
Confidence 001111111 1138999999999999998 44443 588899999888763
No 44
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=90.43 E-value=2.6 Score=50.73 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCC--CCCCCccc---CCccccccccchhhhhcccCCCH
Q 003297 94 NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH--PLPTPVYR---PQMQNLDQNENNEAQAESRLSDA 168 (833)
Q Consensus 94 ~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~--~lp~pvy~---p~~~~~~~~e~~~~~~~~~l~d~ 168 (833)
.+.+++-+|++|+..+... ..--++++...+.|- +-..-+-+ ..+.+ .+|. +..++.. .-.
T Consensus 287 ~~t~~g~al~aa~~~l~~~----------~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~s--dke~-~~~~~a~-~fY 352 (766)
T 3eh2_A 287 TETVFVPVIQAGMEALKAA----------ECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINT--DKEK-TLFQPQT-GAY 352 (766)
T ss_dssp CCCCSHHHHHHHHHHHHHT----------TCCEEEEEEECSCCCSSSTTCCCCCCCGGGTTS--TTGG-GGTSCSS-THH
T ss_pred CcchHHHHHHHHHHHhccC----------CCCcEEEEEecCCCCcCCCcccccccccccCCC--cchh-hhccchH-HHH
Confidence 3566777788888776421 122455555566554 33321111 00000 1111 1212222 234
Q ss_pred HHHHHHHhhcCcEEEE-eccCc---chhHHHHHHHhcCCC
Q 003297 169 ETVAKSFVQCSVSLSV-ICPKQ---LPKLTAIYNAAKRNP 204 (833)
Q Consensus 169 e~la~~~~e~~I~LSv-IsPrk---lp~l~~lf~ka~~~~ 204 (833)
+.||+.+.+.+|.+.+ +++-. +..|+.|.+..+|..
T Consensus 353 ~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 392 (766)
T 3eh2_A 353 QTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSV 392 (766)
T ss_dssp HHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred HHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceE
Confidence 8999999999999888 55554 577888888887763
No 45
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=90.11 E-value=1.2 Score=51.30 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=13.9
Q ss_pred CccEEEEEeCCccchH
Q 003297 3 EKQLIVAVEGTAAMGP 18 (833)
Q Consensus 3 ~~dvVFVID~Tasmg~ 18 (833)
+.+++++||.++||..
T Consensus 362 ~~~~lv~vDvSgSM~~ 377 (535)
T 2nvo_A 362 NTRHLLALDVSGSMTC 377 (535)
T ss_dssp CSEEEEEECCSGGGGS
T ss_pred CceEEEEEECCccccC
Confidence 3789999999999975
No 46
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=33.21 E-value=32 Score=37.14 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=35.2
Q ss_pred HHHHHHHhhcccCccCccCCccEEEEEEeecCCCccccceeeccCCC----CHHH---HHHHHccCccCCC
Q 003297 28 LEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DVDI---FLHWLSTIPFAGG 91 (833)
Q Consensus 28 I~p~le~f~~~~l~~~~~g~~~~~gLV~Y~d~~~~~~~lv~~~gfT~----d~~~---fl~~Ld~I~f~GG 91 (833)
|..++||+.. .-+-+|.|++ |.||.|++..+++.. |+++ ++..-..+...||
T Consensus 174 i~~TLE~LET-----------~GV~Vvgy~t-d~fPaFy~r~Sg~~~pr~d~~~e~A~~~~a~~~lgl~~g 232 (316)
T 4ex8_A 174 HRLTAEYLET-----------AGVPVYGYRT-DKLAAFVVREADVPVTRMDDLHTAARAAEAHWQVNGPGT 232 (316)
T ss_dssp HHHHHHHHHH-----------TTCCEEEETC-SBCCBTTBSCCSCBCEEESSHHHHHHHHHHHHHHHCSCE
T ss_pred chHHHHHHHh-----------CCceEEEecC-CCCceeeeCCCCCcCCCCCCHHHHHHHHHHHHHhCCCCe
Confidence 4688999973 3466889997 688999999888854 4443 4444444554444
No 47
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=32.99 E-value=5.9 Score=38.99 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=71.4
Q ss_pred cceeecccccCCcccC---------Cce--eecccccccccccchhhccCCcchhhhhhhhhhccccccc-cccccchhc
Q 003297 566 KYVKVWEGSLSGQRQG---------QPV--FITKLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQ-YVGKADFLV 633 (833)
Q Consensus 566 ~y~k~w~g~ls~~r~g---------~pV--~I~~legyrsss~set~Aa~wP~~~Q~vr~I~qd~mnn~q-y~gk~d~lv 633 (833)
.-.++|.|.|.=.+.+ ..+ +.|.+.-+ .+ .+..+.+||..+ ++++|++..+.+.. +-+++..++
T Consensus 10 ~k~~iWsG~LeW~ek~~~~~~d~~~~~tr~l~C~vs~~-~g--e~i~~e~WP~kL-~mqLiPk~lL~~ig~~fknSk~Vv 85 (166)
T 2ky6_A 10 NKLLAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVN-HG--ENLKTEQWPQKL-IMQLIPQQLLTTLGPLFRNSRMVQ 85 (166)
T ss_dssp SEEEEEEEEEEEECCCCSSSSCTTCCCEEEEEEEEEEE-TT--SCCCGGGCCSEE-EEEEEEHHHHHHHGGGGSSEEEEE
T ss_pred cccceeeeEEEEeecCCCCCCCccccceeEeeeEEEec-CC--CccccccCCHhh-hhhhCcHHHHHHHHHHhhcCeEEE
Confidence 3457899999222221 112 56777653 22 357789999998 77889996665433 446678889
Q ss_pred cccccch-hhhhhHHHHhhhhhccCCccccccccchhhhhhhccccCCccccccCccchHHHHH
Q 003297 634 FRAMNQH-GFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQQ 696 (833)
Q Consensus 634 fR~ln~h-~iL~~LQ~~Kl~AiIQlPSQqL~LS~Sdk~qrIIgmL~p~D~v~~~pq~~~qQQqq 696 (833)
|+..+.. ..|+.|-.....+.+-+-+.+. ...+.-+++-++|..|+-.+---++..|---
T Consensus 86 F~~t~~d~E~L~sL~~~Mt~gfaGcvhF~~---~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~F 146 (166)
T 2ky6_A 86 FHFTNKDLESLKGLYRIMGNGFAGCVHFPH---TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGF 146 (166)
T ss_dssp EEECSSCHHHHHHHHHHHHHHEEEEEECCT---TCCCSCCEEEEEECTTTCSEEEEEESSHHHH
T ss_pred EecCCCchHHHHHHHHHhhccceEEEECCC---CCCcceEEEEEEEcCCcceeeeeccCCHHHH
Confidence 9877632 2345555444444433322200 1122225666677777766666666665443
No 48
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=26.45 E-value=52 Score=23.44 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=19.1
Q ss_pred HccCccCCCCCc-hhHHHHHHHHHH
Q 003297 83 LSTIPFAGGGFN-DAAIAEGLSEAL 106 (833)
Q Consensus 83 Ld~I~f~GGG~~-~~AvaEGLa~AL 106 (833)
.++|.+.|||.+ .+|-++-+++|+
T Consensus 6 yngityeggggsaaeayakriaeam 30 (33)
T 2i9n_A 6 YNGITYEGGGGSAAEAYAKRIAEAM 30 (33)
T ss_dssp SSSCBCCSSCCCSTHHHHHHHHHHH
T ss_pred ECCEEeecCCchHHHHHHHHHHHHH
Confidence 368999998876 688888888876
No 49
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=24.39 E-value=90 Score=33.73 Aligned_cols=89 Identities=9% Similarity=0.170 Sum_probs=58.8
Q ss_pred ccceeeccCCCCHHHHHHHHccCccCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCCc
Q 003297 64 ACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPV 143 (833)
Q Consensus 64 ~~lv~~~gfT~d~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~pv 143 (833)
+.++-|..--..+.+|-++. +++.+=||+..++=..+|+-.+++.+.... .+ -.++..|+|. |.
T Consensus 115 D~iviR~~~~~~~~~lA~~~-~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-------l~-gl~va~vGD~--~~----- 178 (325)
T 1vlv_A 115 DAIMFRGYKQETVEKLAEYS-GVPVYNGLTDEFHPTQALADLMTIEENFGR-------LK-GVKVVFMGDT--RN----- 178 (325)
T ss_dssp SEEEEESSCHHHHHHHHHHH-CSCEEESCCSSCCHHHHHHHHHHHHHHHSC-------ST-TCEEEEESCT--TS-----
T ss_pred CEEEEECCChHHHHHHHHhC-CCCEEeCCCCCCCcHHHHHHHHHHHHHhCC-------cC-CcEEEEECCC--Cc-----
Confidence 44555554445556666555 577776776688888999999988775321 12 2445556551 11
Q ss_pred ccCCccccccccchhhhhcccCCCHHHHHHHHhhcCcEEEEeccCcc
Q 003297 144 YRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 190 (833)
Q Consensus 144 y~p~~~~~~~~e~~~~~~~~~l~d~e~la~~~~e~~I~LSvIsPrkl 190 (833)
..+--++..+...|++|.+++|+.+
T Consensus 179 ----------------------rva~Sl~~~~~~~G~~v~~~~P~~~ 203 (325)
T 1vlv_A 179 ----------------------NVATSLMIACAKMGMNFVACGPEEL 203 (325)
T ss_dssp ----------------------HHHHHHHHHHHHTTCEEEEESCGGG
T ss_pred ----------------------CcHHHHHHHHHHCCCEEEEECCccc
Confidence 1346678888899999999999986
No 50
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=22.88 E-value=59 Score=34.27 Aligned_cols=91 Identities=8% Similarity=-0.004 Sum_probs=59.4
Q ss_pred cEEEEEeCCccchHhHHHHHHHHHHHHHHHhhcccCccCccCC-ccEEEEEEeecCCCccccceeeccCCCCHHHHHHHH
Q 003297 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSAS-NVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWL 83 (833)
Q Consensus 5 dvVFVID~Tasmg~y~~~lkt~YI~p~le~f~~~~l~~~~~g~-~~~~gLV~Y~d~~~~~~~lv~~~gfT~d~~~fl~~L 83 (833)
..+|+.|+.++..+..++|. ++.....+|.+. +|- .-++||+.|..... ....-+.++.+.++.|
T Consensus 112 ~~~~l~D~g~N~~p~~e~l~-~ia~~a~~~a~~-------lGi~~PkVAlLs~~~~g~------~~~~~~~~a~~l~k~l 177 (279)
T 1yco_A 112 KTFLLTDCAMNIAPTQATLI-EIVENAKEVAQK-------LGLHHPKIALLSAAENFN------PKMPSSVLAKEVTAHF 177 (279)
T ss_dssp CEEEEECSSSCSSCCHHHHH-HHHHHHHHHHHH-------TTCSSCEEEEECSCSSCC------TTCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCCCHHHHH-HHHHHHHHHHHH-------hCCCCCeEEEEeccccCC------CCChHHHHHHHHHHHH
Confidence 46799999999999966665 556667777763 332 47999999986544 2445567778887766
Q ss_pred cc---CccCCCCCchhHHHHHHHHHHhcc
Q 003297 84 ST---IPFAGGGFNDAAIAEGLSEALMMF 109 (833)
Q Consensus 84 d~---I~f~GGG~~~~AvaEGLa~AL~~f 109 (833)
+. +.|.|-=..++|+.+-.++--..+
T Consensus 178 ~~~~~~~~dG~i~~D~A~~~~~~~~k~~~ 206 (279)
T 1yco_A 178 NDQQEATVFGPLSLDLATSEEAVAHKRYS 206 (279)
T ss_dssp SSCSSCEEEEEECHHHHHCHHHHHHTTCC
T ss_pred HhCCCCEEEeeCcHHhhcCHHHHHhcCCC
Confidence 65 444432233566666665544333
No 51
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=21.66 E-value=2.6e+02 Score=29.88 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=58.4
Q ss_pred ccceeeccCCCCHHHHHHHHccCccCCCCC-chhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCCC
Q 003297 64 ACLVQRSGWTKDVDIFLHWLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTP 142 (833)
Q Consensus 64 ~~lv~~~gfT~d~~~fl~~Ld~I~f~GGG~-~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~p 142 (833)
+.++-|+.--..+.+|-++..+++++=||+ ..++=..+|+-.+++.+.... .+ -+++..|+|.. |
T Consensus 100 D~iviR~~~~~~~~~la~~~~~vPVINag~G~~~HPtQaLaDl~Ti~e~~g~-------l~-gl~va~vGD~~-~----- 165 (310)
T 3csu_A 100 DAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGR-------LD-NLHVAMVGDLK-Y----- 165 (310)
T ss_dssp SEEEEEESSTTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHHHHSC-------SS-SCEEEEESCTT-T-----
T ss_pred CEEEEECCChhHHHHHHHhcCCCCEEcCccCCCCCchHHHHHHHHHHHHhCC-------cC-CcEEEEECCCC-C-----
Confidence 334444433444566666653788888887 478888889888888765321 12 23444444210 0
Q ss_pred cccCCccccccccchhhhhcccCCCHHHHHHHHhhc-CcEEEEeccCcc
Q 003297 143 VYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC-SVSLSVICPKQL 190 (833)
Q Consensus 143 vy~p~~~~~~~~e~~~~~~~~~l~d~e~la~~~~e~-~I~LSvIsPrkl 190 (833)
+ ..+-.++..+... |+++.++||+-+
T Consensus 166 --------------------~--rva~Sl~~~~~~~~g~~v~~~~P~~~ 192 (310)
T 3csu_A 166 --------------------G--RTVHSLTQALAKFDGNRFYFIAPDAL 192 (310)
T ss_dssp --------------------C--HHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred --------------------C--chHHHHHHHHHhCCCCEEEEECCccc
Confidence 0 1456788889999 999999999986
No 52
>3l15_A Transcriptional enhancer factor TEF-4; activator, DNA-binding, nucleus, transcriptio regulation; HET: MSE GOL; 2.00A {Homo sapiens}
Probab=20.26 E-value=88 Score=32.27 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=7.5
Q ss_pred CCcEE-EEeecCCCCCCC
Q 003297 124 GQRHC-ILVAASNPHPLP 140 (833)
Q Consensus 124 ~qk~c-ILIa~SpP~~lp 140 (833)
+.||+ |.|..+.|+...
T Consensus 30 ~~rH~fV~i~~~~~~~~d 47 (231)
T 3l15_A 30 YQRHLFVHISQHCPSPGA 47 (231)
T ss_dssp -CCEEEEEEEC-------
T ss_pred ccceEEEEeCCCCCCCCC
Confidence 46777 899988876544
No 53
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=20.05 E-value=99 Score=33.23 Aligned_cols=90 Identities=14% Similarity=0.218 Sum_probs=59.0
Q ss_pred ccccceeeccCCCCHHHHHHHHccCccCCCCCchhHHHHHHHHHHhccccCCCCCCCCCCcCCCcEEEEeecCCCCCCCC
Q 003297 62 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT 141 (833)
Q Consensus 62 ~~~~lv~~~gfT~d~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk~cILIa~SpP~~lp~ 141 (833)
|.+.++-|+.--..+.+|-++. +++.+=||+..++=..+|+-.+++.+.... .+ -.++..|+|- -
T Consensus 101 ~~D~iviR~~~~~~~~~lA~~~-~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-------l~-gl~va~vGD~-----~- 165 (315)
T 1pvv_A 101 YVDAIMARVYDHKDVEDLAKYA-TVPVINGLSDFSHPCQALADYMTIWEKKGT-------IK-GVKVVYVGDG-----N- 165 (315)
T ss_dssp TCSEEEEECSSHHHHHHHHHHC-SSCEEEEECSSCCHHHHHHHHHHHHHHHSC-------CT-TCEEEEESCC-----C-
T ss_pred hCcEEEEecCchHHHHHHHHhC-CCCEEcCCCCCCCcHHHHHHHHHHHHHhCC-------cC-CcEEEEECCC-----c-
Confidence 3344555554444555655554 577776776688888999999988875321 11 2445555542 0
Q ss_pred CcccCCccccccccchhhhhcccCCCHHHHHHHHhhcCcEEEEeccCcc
Q 003297 142 PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 190 (833)
Q Consensus 142 pvy~p~~~~~~~~e~~~~~~~~~l~d~e~la~~~~e~~I~LSvIsPrkl 190 (833)
..+--++..+...|+++.+++|+-+
T Consensus 166 ------------------------rva~Sl~~~~~~~g~~v~~~~P~~~ 190 (315)
T 1pvv_A 166 ------------------------NVAHSLMIAGTKLGADVVVATPEGY 190 (315)
T ss_dssp ------------------------HHHHHHHHHHHHTTCEEEEECCTTC
T ss_pred ------------------------chHHHHHHHHHHCCCEEEEECCccc
Confidence 1456678888899999999999986
Done!