Query 003298
Match_columns 833
No_of_seqs 366 out of 835
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 20:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 3.9E-29 1.3E-33 235.4 14.1 115 119-233 5-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 1.4E-17 4.6E-22 160.2 12.0 98 124-231 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 2.2E-14 7.5E-19 129.6 11.1 94 125-229 8-101 (104)
4 1na6_A Ecorii, restriction end 95.3 0.032 1.1E-06 61.6 8.2 91 125-216 18-122 (404)
5 1vd2_A Protein kinase C, IOTA 93.2 0.18 6E-06 45.3 6.8 55 766-827 7-61 (89)
6 2kkc_A Sequestosome-1; P62, PB 92.3 0.11 3.9E-06 47.6 4.4 62 762-829 2-79 (102)
7 2ktr_A Sequestosome-1; autopha 92.0 0.12 4.1E-06 48.6 4.2 59 763-828 18-93 (117)
8 1wmh_B Partitioning defective- 91.8 0.29 9.9E-06 43.8 6.2 55 767-828 8-63 (86)
9 1q1o_A Cell division control p 81.1 2.1 7.1E-05 39.2 5.4 65 764-830 4-75 (98)
10 1pqs_A Cell division control p 78.9 1.8 6.1E-05 37.9 4.1 49 780-830 6-54 (77)
11 2bkf_A Zinc-finger protein NBR 68.3 10 0.00035 34.1 6.3 52 767-827 8-60 (87)
12 4b8c_D Glucose-repressible alc 67.6 1.5 5E-05 51.1 1.0 6 812-817 464-469 (727)
13 1wj6_A KIAA0049 protein, RSGI 62.0 11 0.00038 34.7 5.5 53 766-827 15-68 (101)
14 3iot_A Maltose-binding protein 52.8 3.8 0.00013 44.0 0.9 8 195-202 127-134 (449)
15 2kr7_A FKBP-type peptidyl-prol 52.7 46 0.0016 31.6 8.3 105 203-322 4-119 (151)
16 3cgm_A SLYD, peptidyl-prolyl C 49.2 40 0.0014 32.5 7.4 100 206-322 3-110 (158)
17 2k8i_A SLYD, peptidyl-prolyl C 48.9 40 0.0014 32.9 7.4 102 206-322 3-114 (171)
18 2kfw_A FKBP-type peptidyl-prol 47.8 17 0.00058 36.4 4.6 127 206-362 3-139 (196)
19 3p8d_A Medulloblastoma antigen 40.8 38 0.0013 29.0 5.0 53 291-361 5-57 (67)
20 1oey_J P40-PHOX, neutrophil cy 40.7 36 0.0012 31.6 5.2 39 781-828 28-66 (107)
21 2jng_A Cullin-7, CUL-7; P53 bi 39.9 44 0.0015 31.0 5.6 73 275-362 6-78 (105)
22 4dt4_A FKBP-type 16 kDa peptid 39.3 44 0.0015 32.7 6.0 105 205-322 24-138 (169)
23 3s6w_A Tudor domain-containing 35.9 32 0.0011 27.2 3.6 28 292-322 1-28 (54)
24 1mhn_A SurviVal motor neuron p 35.2 37 0.0013 27.4 4.0 28 292-322 3-30 (59)
25 3o27_A Putative uncharacterize 34.8 34 0.0012 29.5 3.8 34 198-231 31-65 (68)
26 4a4f_A SurviVal of motor neuro 34.5 36 0.0012 28.1 3.8 42 291-344 7-48 (64)
27 3iot_A Maltose-binding protein 34.3 12 0.00041 40.1 1.2 6 40-45 6-11 (449)
28 3qii_A PHD finger protein 20; 33.8 51 0.0017 29.5 4.9 53 291-361 20-72 (85)
29 3pr9_A FKBP-type peptidyl-prol 32.7 2.1E+02 0.0071 27.5 9.4 62 250-322 56-123 (157)
30 2equ_A PHD finger protein 20-l 31.4 45 0.0015 28.8 4.1 39 291-343 8-46 (74)
31 2e63_A KIAA1787 protein; struc 28.3 35 0.0012 33.5 3.2 25 203-227 115-139 (170)
32 1oey_A P67-PHOX, neutrophil cy 27.6 95 0.0032 27.5 5.5 56 766-830 6-62 (83)
33 1g5v_A SurviVal motor neuron p 26.8 56 0.0019 29.0 4.0 42 291-344 9-50 (88)
34 3m7a_A Uncharacterized protein 25.4 57 0.0019 31.2 4.0 46 166-214 84-140 (140)
35 2k75_A Uncharacterized protein 22.2 1.6E+02 0.0054 26.3 6.1 46 165-230 39-88 (106)
36 3pie_A 5'->3' exoribonuclease 21.3 1.2E+02 0.004 38.1 6.6 49 290-346 1063-1111(1155)
37 2vb2_X Copper protein, cation 21.0 89 0.003 27.5 4.1 26 203-228 59-86 (88)
38 2cbp_A Cucumber basic protein; 20.9 42 0.0015 29.9 2.1 18 201-218 19-36 (96)
39 3e0e_A Replication protein A; 20.5 2E+02 0.0068 25.2 6.3 62 124-217 13-74 (97)
40 3pnw_C Tudor domain-containing 20.4 91 0.0031 26.8 4.0 41 292-344 17-57 (77)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=3.9e-29 Score=235.40 Aligned_cols=115 Identities=29% Similarity=0.479 Sum_probs=104.5
Q ss_pred CCCCCCceeEEEeeccccCCCCCceeeecchhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccch
Q 003298 119 APNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWS 198 (833)
Q Consensus 119 ~~~~~~~~lF~K~LT~SDV~~~GrfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~Dl~G~~W~FR~iyrg~pkrhlLTtGWs 198 (833)
...+...++|+|+||+|||++++||+||+++|++|||.++..+..++++|.++|.+|++|+|||+||+++++|+||+||+
T Consensus 5 ~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~ 84 (130)
T 1wid_A 5 SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWS 84 (130)
T ss_dssp ---CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHH
T ss_pred CCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChH
Confidence 34566788999999999999999999999999999999987766788999999999999999999999999999999999
Q ss_pred hhhhccCCcCCCEEEEEEcc--CCcEEEEEEecCCCC
Q 003298 199 VFVSAKRLVAGDSVLFIWNE--KNQLLLGIRRATRPQ 233 (833)
Q Consensus 199 ~FVr~K~L~aGDsVvF~R~e--~G~L~VGIRRa~r~~ 233 (833)
.||++|+|++||+|+|+|.+ +++|+|++||+.++.
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999985 467999999998754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.73 E-value=1.4e-17 Score=160.18 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=86.5
Q ss_pred CceeEEEeeccccCCCCCceeeecchhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhhc
Q 003298 124 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 203 (833)
Q Consensus 124 ~~~lF~K~LT~SDV~~~GrfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FVr~ 203 (833)
..++|.|+||+||+.++.+|.||+++++.|||..+ .++.++|. |+.|+|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 35699999999999887789999999999999753 46788887 6999999999974 69999999999999
Q ss_pred cCCcCCCEEEEEEccCC--cEEEEEEecCC
Q 003298 204 KRLVAGDSVLFIWNEKN--QLLLGIRRATR 231 (833)
Q Consensus 204 K~L~aGDsVvF~R~e~G--~L~VGIRRa~r 231 (833)
++|++||.|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999998655 69999999863
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.54 E-value=2.2e-14 Score=129.55 Aligned_cols=94 Identities=22% Similarity=0.397 Sum_probs=82.3
Q ss_pred ceeEEEeeccccCCCCCceeeecchhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhhcc
Q 003298 125 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAK 204 (833)
Q Consensus 125 ~~lF~K~LT~SDV~~~GrfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FVr~K 204 (833)
.+.|.|+|+++|. ..+|.||+++++.+.+.+ ..++.++|..|++|++++.+++ ++.+|++||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 4689999999994 459999999998865543 2478899999999999999874 5789999999999999
Q ss_pred CCcCCCEEEEEEccCCcEEEEEEec
Q 003298 205 RLVAGDSVLFIWNEKNQLLLGIRRA 229 (833)
Q Consensus 205 ~L~aGDsVvF~R~e~G~L~VGIRRa 229 (833)
+|++||.|+|...++..+.|.|-|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999999999999999875
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.34 E-value=0.032 Score=61.65 Aligned_cols=91 Identities=23% Similarity=0.360 Sum_probs=67.0
Q ss_pred ceeEEEeeccccCCCCC----ceeeecchhhhhCCCCCCC-CCCCceEEEEE--ecCCCeEEEEEEEeC------CCCce
Q 003298 125 TNYFCKTLTASDTSTHG----GFSVPRRAAEKVFPPLDYS-QTPPAQELIAR--DLHDNEWKFRHIFRG------QPKRH 191 (833)
Q Consensus 125 ~~lF~K~LT~SDV~~~G----rfsVPk~~Ae~~FP~Ld~~-~~~p~q~L~~~--Dl~G~~W~FR~iyrg------~pkrh 191 (833)
...|+|.|++.|++..| +|-+|+..+..+||.|+.. ...+...+.+. |...-++.++.+|.+ +...|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 67899999999998764 7999998899999998833 33455555543 444455699999996 55678
Q ss_pred eecccch-hhhhccCCcCCCEEEEEE
Q 003298 192 LLTTGWS-VFVSAKRLVAGDSVLFIW 216 (833)
Q Consensus 192 lLTtGWs-~FVr~K~L~aGDsVvF~R 216 (833)
.||. |. .+.-.....+||.++|-+
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~ 122 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAF 122 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEE
Confidence 8973 32 344457778999999875
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=93.22 E-value=0.18 Score=45.33 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=42.1
Q ss_pred ceEEEeccccceeeeccCCCCChHHHHHHHHHhhCCCCCCCCCCCCCeEEEEEeCCCCeEEe
Q 003298 766 TFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLL 827 (833)
Q Consensus 766 ~fVKV~m~G~iGRkiDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvY~D~EgD~mLv 827 (833)
.=||++-.|.+ |.+.+..--+|++|..+|..+|++. ....+++.|.|.|||+.-+
T Consensus 7 vkvK~~~~gdi-~~~~v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 7 VRVKAYYRGDI-MITHFEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp EEEEEESSSCE-EEEEECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCCEEC
T ss_pred EEEEEEeCCeE-EEEECCCCCCHHHHHHHHHHHhCCC------CCCeEEEEEECCCCCcccc
Confidence 46778888842 3444444579999999999999975 2346999999999998654
No 6
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=92.35 E-value=0.11 Score=47.59 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=42.9
Q ss_pred CCCcceEEEeccc-----cceeeeccCC-----------CCChHHHHHHHHHhhCCCCCCCCCCCCCeEEEEEeCCCCeE
Q 003298 762 PPTRTFVKVHKSG-----SFGRSLDISK-----------FSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVL 825 (833)
Q Consensus 762 ~~~~~fVKV~m~G-----~iGRkiDL~~-----------~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvY~D~EgD~m 825 (833)
|...+=||+|-.| .-=|++-+.. ..+|++|+..+.++|..- . +..|+|.|.|.|||..
T Consensus 2 ~~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l---~---~~~f~l~Y~DedGDlI 75 (102)
T 2kkc_A 2 PHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL---R---PGGFQAHYRAERGDLV 75 (102)
T ss_dssp -CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS---C---SSCEEEEEECTTCCEE
T ss_pred CCceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc---C---CCcEEEEEECCCCCEE
Confidence 4556778998865 1224444422 248999999999999521 1 2459999999999987
Q ss_pred Eecc
Q 003298 826 LLGD 829 (833)
Q Consensus 826 LvGD 829 (833)
-+.+
T Consensus 76 tiSs 79 (102)
T 2kkc_A 76 AFSS 79 (102)
T ss_dssp EECS
T ss_pred EecC
Confidence 6644
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=92.01 E-value=0.12 Score=48.60 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=41.9
Q ss_pred CCcceEEEeccc-----cceeeeccC-----------CCCChHHHHHHHHHhhC-CCCCCCCCCCCCeEEEEEeCCCCeE
Q 003298 763 PTRTFVKVHKSG-----SFGRSLDIS-----------KFSSYDELRSELARMFG-LEGQLEDPQRSGWQLVFVDRENDVL 825 (833)
Q Consensus 763 ~~~~fVKV~m~G-----~iGRkiDL~-----------~~~sY~eL~~~L~~MFg-~~g~l~d~~~s~~~lvY~D~EgD~m 825 (833)
...+=||++-.| .==|++-|. .-.+|++|+..+.++|. +.+ ..|+|.|.|.|||..
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~-------~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRP-------GGFQAHYRAERGDLV 90 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS-------SCEEEEEECTTCCEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCC-------CcEEEEEECCCCCEE
Confidence 446789999875 112444443 13599999999999994 432 459999999999987
Q ss_pred Eec
Q 003298 826 LLG 828 (833)
Q Consensus 826 LvG 828 (833)
-+.
T Consensus 91 tIS 93 (117)
T 2ktr_A 91 AFS 93 (117)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 8
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=91.81 E-value=0.29 Score=43.84 Aligned_cols=55 Identities=25% Similarity=0.323 Sum_probs=42.4
Q ss_pred eEEEecccccee-eeccCCCCChHHHHHHHHHhhCCCCCCCCCCCCCeEEEEEeCCCCeEEec
Q 003298 767 FVKVHKSGSFGR-SLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLG 828 (833)
Q Consensus 767 fVKV~m~G~iGR-kiDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvY~D~EgD~mLvG 828 (833)
=||.+-++.+=| +||-+.-.+|++|..-|+++|.+.+ ..+++.|.|.+||++-+-
T Consensus 8 ~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~-------~~f~i~Y~D~dGDLlpIn 63 (86)
T 1wmh_B 8 EVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG-------LDVLLGYTDAHGDLLPLT 63 (86)
T ss_dssp EEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT-------CCCEEEEECTTSCEEECC
T ss_pred EEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC-------CCEEEEEECCCCCEeeec
Confidence 466666665543 5666677899999999999998532 359999999999998653
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=81.05 E-value=2.1 Score=39.22 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=47.7
Q ss_pred CcceEEEeccc-----cce--eeeccCCCCChHHHHHHHHHhhCCCCCCCCCCCCCeEEEEEeCCCCeEEeccC
Q 003298 764 TRTFVKVHKSG-----SFG--RSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDD 830 (833)
Q Consensus 764 ~~~fVKV~m~G-----~iG--RkiDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvY~D~EgD~mLvGDv 830 (833)
...=|||+-.. +++ |.|=+..--+|++|...+.+-|++. ..++ .....+|-|+|.|||+..++++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~-i~~~~klkYkDEdGD~Vtl~sd 75 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNN-ISPITKIKYQDEDGDFVVLGSD 75 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSC-CCCCCCEEEECSSSCEEEECSH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC-cccc-ccceeEEEEEcCCCCEEEEcCH
Confidence 34567777542 244 7777888889999999999999875 1121 1234799999999999988864
No 10
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=78.90 E-value=1.8 Score=37.86 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=36.6
Q ss_pred eccCCCCChHHHHHHHHHhhCCCCCCCCCCCCCeEEEEEeCCCCeEEeccC
Q 003298 780 LDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDD 830 (833)
Q Consensus 780 iDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvY~D~EgD~mLvGDv 830 (833)
|=+..--+|++|...+.+-|++. ..+..+...+|-|+|.|||+...+++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~--~~~~~~~~~~lkYkDEdGD~Vti~sd 54 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT--HNNNISPITKIKYQDEDGDFVVLGSD 54 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT--TSSCSCSTTCCEEEETTTEEEECCST
T ss_pred EEeCCCCCHHHHHHHHHHHHccc--ccccccceeEEEEEcCCCCEEEEcCH
Confidence 33445568999999999999975 12211355799999999999888764
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=68.31 E-value=10 Score=34.11 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=40.9
Q ss_pred eEEEeccc-cceeeeccCCCCChHHHHHHHHHhhCCCCCCCCCCCCCeEEEEEeCCCCeEEe
Q 003298 767 FVKVHKSG-SFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLL 827 (833)
Q Consensus 767 fVKV~m~G-~iGRkiDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvY~D~EgD~mLv 827 (833)
=+||+=.| ..=-.|.-..-.++++|...+..+||++ .++|.|.|.|||-.-|
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---------SEEEEEECTTSCEEEE
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---------ceEEEEEcCCCCEEEE
Confidence 46888888 3333565555679999999999999985 3799999999997644
No 12
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=67.62 E-value=1.5 Score=51.07 Aligned_cols=6 Identities=33% Similarity=0.910 Sum_probs=1.6
Q ss_pred CeEEEE
Q 003298 812 GWQLVF 817 (833)
Q Consensus 812 ~~~lvY 817 (833)
||.-+|
T Consensus 464 gY~~~~ 469 (727)
T 4b8c_D 464 GYTGIF 469 (727)
T ss_dssp --CEEC
T ss_pred CccEEE
Confidence 344443
No 13
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=62.04 E-value=11 Score=34.69 Aligned_cols=53 Identities=13% Similarity=0.227 Sum_probs=41.9
Q ss_pred ceEEEecccc-ceeeeccCCCCChHHHHHHHHHhhCCCCCCCCCCCCCeEEEEEeCCCCeEEe
Q 003298 766 TFVKVHKSGS-FGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLL 827 (833)
Q Consensus 766 ~fVKV~m~G~-iGRkiDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvY~D~EgD~mLv 827 (833)
.=+||+=-|. .=--|.-..-.++++|...+..+|+++ .++|.|.|.|||-.-|
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---------~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 68 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---------SBCCEEECTTSCEECC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---------ceEEEEecCCCCEEEE
Confidence 3578888884 333575566779999999999999985 3799999999997643
No 14
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=52.82 E-value=3.8 Score=43.99 Aligned_cols=8 Identities=13% Similarity=0.493 Sum_probs=4.7
Q ss_pred ccchhhhh
Q 003298 195 TGWSVFVS 202 (833)
Q Consensus 195 tGWs~FVr 202 (833)
+-|..|+.
T Consensus 127 ~Twdel~~ 134 (449)
T 3iot_A 127 KTWEEIPA 134 (449)
T ss_dssp SBGGGHHH
T ss_pred CCHHHHHH
Confidence 34666665
No 15
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=52.68 E-value=46 Score=31.58 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=63.9
Q ss_pred ccCCcCCCEEEEE-Ec--c-CCcEEEEEEecCCCCCCCCCCcc-CCCcccccHHHHHHHHHHcCCcEEEEEcCCCC----
Q 003298 203 AKRLVAGDSVLFI-WN--E-KNQLLLGIRRATRPQTVMPSSVL-SSDSMHIGLLAAAAHAAATNSRFTIFYNPRAS---- 273 (833)
Q Consensus 203 ~K~L~aGDsVvF~-R~--e-~G~L~VGIRRa~r~~~~~pssv~-s~~sm~~gvla~Aa~aaat~~~F~V~Y~PRas---- 273 (833)
.+..+.||.|.+. .. . +|+.+-.-+. . .|.... ....+ +--+.+|......|..++|.--|...
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~-~-----~p~~f~~G~g~v-ipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS-K-----EPLEFIIGTNQI-IAGLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT-T-----CCEEEETTCCCS-CHHHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC-C-----cCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 3557789999873 32 4 7776544321 1 122221 11222 22355666667788888887655432
Q ss_pred --CCcceechHHHHHHHhcCCCcccCEEEEeeeccCcccceeeEEEEEecc
Q 003298 274 --PSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 322 (833)
Q Consensus 274 --~sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d 322 (833)
-.-+.||+..| . ...+.+||+|.+ ++++. ....|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f--~--~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF--E--GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG--T--TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc--C--CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 24467888877 2 247999999985 45553 467899999975
No 16
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=49.16 E-value=40 Score=32.46 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=60.8
Q ss_pred CcCCCEEEEE-Ec-cCCcEEEEEEecCCCCCCCCCCccCCCcccccHHHHHHHHHHcCCcEEEEEcCCCCC------Ccc
Q 003298 206 LVAGDSVLFI-WN-EKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASP------SEF 277 (833)
Q Consensus 206 L~aGDsVvF~-R~-e~G~L~VGIRRa~r~~~~~pssv~s~~sm~~gvla~Aa~aaat~~~F~V~Y~PRas~------sEF 277 (833)
.+.||.|.+- +. .+|+.+-.-+ . . -.+....+ +--+.+|......|..++|.--|.... --+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~-------~-f~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-L-------S-YLHGHRNL-IPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-E-------E-EETTSSSS-CHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-E-------E-EEECCCCc-ChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5688888773 22 5776654332 0 0 00111122 223556666677788888887654432 346
Q ss_pred eechHHHHHHHhcCCCcccCEEEEeeeccCcccceeeEEEEEecc
Q 003298 278 VIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 322 (833)
Q Consensus 278 VVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d 322 (833)
.||+..|-+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 7888776322 37999999985 45542 567899999975
No 17
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=48.90 E-value=40 Score=32.89 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=61.8
Q ss_pred CcCCCEEEE-EEc--cCCcEEEEEEecCCCCCCCCCCcc-CCCcccccHHHHHHHHHHcCCcEEEEEcCCCCC------C
Q 003298 206 LVAGDSVLF-IWN--EKNQLLLGIRRATRPQTVMPSSVL-SSDSMHIGLLAAAAHAAATNSRFTIFYNPRASP------S 275 (833)
Q Consensus 206 L~aGDsVvF-~R~--e~G~L~VGIRRa~r~~~~~pssv~-s~~sm~~gvla~Aa~aaat~~~F~V~Y~PRas~------s 275 (833)
.+.||.|.+ |.. .+|+.+-.-+ .. .|.... ....+-. -+.+|......|..++|..-|-... .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~-~~-----~P~~f~lG~g~vip-G~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESP-VS-----APLDYLHGHGSLIS-GLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECC-SS-----SCEEEETTSCSSCS-HHHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeecc-CC-----cCEEEEECCCCcch-HHHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568999887 332 4777654432 11 122211 2222222 3556777777888888877665433 3
Q ss_pred cceechHHHHHHHhcCCCcccCEEEEeeeccCcccceeeEEEEEecc
Q 003298 276 EFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 322 (833)
Q Consensus 276 EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d 322 (833)
-+.||++.|-. ...+.+||+|.+ ++++. . ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~---~~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG---VDELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT---SSCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc---ccCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 35788877632 136999999985 55553 2 6899999975
No 18
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=47.79 E-value=17 Score=36.43 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=72.8
Q ss_pred CcCCCEEEE-EE--ccCCcEEEEEEecCCCCCCCCCCcc-CCCcccccHHHHHHHHHHcCCcEEEEEcCCCC------CC
Q 003298 206 LVAGDSVLF-IW--NEKNQLLLGIRRATRPQTVMPSSVL-SSDSMHIGLLAAAAHAAATNSRFTIFYNPRAS------PS 275 (833)
Q Consensus 206 L~aGDsVvF-~R--~e~G~L~VGIRRa~r~~~~~pssv~-s~~sm~~gvla~Aa~aaat~~~F~V~Y~PRas------~s 275 (833)
.+.||.|.+ |+ .++|+.+-.-+ .. .|..+. ....+ +--|.+|......|..++|..-|-.. ..
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~-~~-----~P~~f~lG~g~v-ipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESP-VS-----APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECC-TT-----SCCEEESSSSSS-CHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecC-CC-----CCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 578999887 33 35777654432 11 122222 22222 22355666666778888888665432 24
Q ss_pred cceechHHHHHHHhcCCCcccCEEEEeeeccCcccceeeEEEEEeccCCCCCCCCCCceeeEEeeCCCCCCCCCCCcccc
Q 003298 276 EFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLW 355 (833)
Q Consensus 276 EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~~~~~RVSPW 355 (833)
-+.||++.|.. ...+.+||+|.+ ++++- .+.++|+.|.+- .+.|.-.-|-+++. =-.
T Consensus 76 V~~vp~~~f~~---~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~~-----------~V~vD~NHPLAGk~----L~F 132 (196)
T 2kfw_A 76 VQRVPKDVFMG---VDELQVGMRFLA--ETDQG---PVPVEITAVEDD-----------HVVVDGNHMLAGQN----LKF 132 (196)
T ss_dssp CEEECGGGCCC---SSCCCTTCEEEE--EETTE---EEEEEBCCCCSS-----------SEEECCCCTTSCCC----CEE
T ss_pred EEEEEHHHCCC---ccCcccCCEEEE--ECCCC---cEEEEEEEEcCC-----------EEEEeCCCCCCCCe----EEE
Confidence 47788876531 136999999974 55552 678999999751 23454444544442 234
Q ss_pred ccccCCC
Q 003298 356 EIEPLTT 362 (833)
Q Consensus 356 EIEpv~~ 362 (833)
+||.+.-
T Consensus 133 ~vev~~v 139 (196)
T 2kfw_A 133 NVEVVAI 139 (196)
T ss_dssp EEEECCC
T ss_pred EEEEEEe
Confidence 6666553
No 19
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=40.85 E-value=38 Score=29.00 Aligned_cols=53 Identities=9% Similarity=0.221 Sum_probs=38.7
Q ss_pred CCCcccCEEEEeeeccCcccceeeEEEEEeccCCCCCCCCCCceeeEEeeCCCCCCCCCCCccccccccCC
Q 003298 291 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 361 (833)
Q Consensus 291 ~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~~~~~RVSPWEIEpv~ 361 (833)
..|.+|+++-..+ ++ .++|-++|++|... ....|..++.. .+.|..=+|.|++
T Consensus 5 ~~~~vGd~vmArW-~D---~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 5 SEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp CCCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cccccCCEEEEEc-CC---CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 5799999999999 33 28999999999852 45899999833 3445555555443
No 20
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=40.70 E-value=36 Score=31.56 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=32.9
Q ss_pred ccCCCCChHHHHHHHHHhhCCCCCCCCCCCCCeEEEEEeCCCCeEEec
Q 003298 781 DISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLG 828 (833)
Q Consensus 781 DL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvY~D~EgD~mLvG 828 (833)
||+.--+|.||..-..+-|..+ +-.|-|.|.|||+.-+=
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~---------DIaLNYrD~eGDLIril 66 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE---------DIALNYRDAEGDLVRLL 66 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS---------SEEEEEECTTSCEEECC
T ss_pred ccccCCCHHHHHHHHHHHhccc---------ceeeeeecCCCCEEEEc
Confidence 6677789999999999999843 47999999999997553
No 21
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=39.85 E-value=44 Score=31.01 Aligned_cols=73 Identities=32% Similarity=0.343 Sum_probs=43.9
Q ss_pred CcceechHHHHHHHhcCCCcccCEEEEeeeccCcccceeeEEEEEeccCCCCCCCCCCceeeEEeeCCCCCCCCCCCccc
Q 003298 275 SEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSL 354 (833)
Q Consensus 275 sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~~~~~RVSP 354 (833)
++|- ..+.|..-+. .+..+|||+||.=.-||-+. -=.|++. ++. + . -+ .+||.|.... +.-.|+-
T Consensus 6 sdF~-s~~~Ya~YVr-~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~--G---l~--~vQv~W~~~G---~TyWV~~ 70 (105)
T 2jng_A 6 SEFA-SGNTYALYVR-DTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N--G---VP--PVQVFWESTG---RTYWVHW 70 (105)
T ss_dssp GGSS-SSHHHHHHHH-HHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T--T---SS--EEEEEETTTT---EEEEEEG
T ss_pred hhcc-cchhHHHHHH-hcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C--C---Cc--cceeeehhcC---ceEEEEe
Confidence 4554 2355666665 47999999999633333222 2378887 432 2 2 22 8999998664 2344555
Q ss_pred cccccCCC
Q 003298 355 WEIEPLTT 362 (833)
Q Consensus 355 WEIEpv~~ 362 (833)
=.||++..
T Consensus 71 ~~~Ellg~ 78 (105)
T 2jng_A 71 HMLEILGF 78 (105)
T ss_dssp GGEEECCC
T ss_pred ehhhhcCC
Confidence 56777653
No 22
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=39.34 E-value=44 Score=32.75 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=65.1
Q ss_pred CCcCCCEEEE-EEc--cCCcEEEEEEecCCCCCCCCCCcc-CCCcccccHHHHHHHHHHcCCcEEEEEcCCCCCCc----
Q 003298 205 RLVAGDSVLF-IWN--EKNQLLLGIRRATRPQTVMPSSVL-SSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSE---- 276 (833)
Q Consensus 205 ~L~aGDsVvF-~R~--e~G~L~VGIRRa~r~~~~~pssv~-s~~sm~~gvla~Aa~aaat~~~F~V~Y~PRas~sE---- 276 (833)
..+.||.|.+ |+. ++|+.+-.-+...+ |.... ....+ +--+.+|......|..++|..-|.....+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~-----P~~f~lG~g~v-ipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGK-----PALFRLGDASL-SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTS-----CEEEETTSSSS-CHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCC-----CEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5789999988 332 57876544221111 22211 11112 22356777777888889998776654433
Q ss_pred --ceechHHHHHHHhcCCCcccCEEEEeeeccCcccceeeEEEEEecc
Q 003298 277 --FVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 322 (833)
Q Consensus 277 --FVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d 322 (833)
+.||++.+-.. ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 57888776422 36899999876 55542 467899999985
No 23
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=35.88 E-value=32 Score=27.21 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.3
Q ss_pred CCcccCEEEEeeeccCcccceeeEEEEEecc
Q 003298 292 RVSVGMRFRMLFETEESSVRRYMGTITGISD 322 (833)
Q Consensus 292 ~ws~GMRFrM~fEtEdss~rry~GTI~gv~d 322 (833)
.|.+|+.+-..|..+. .||.++|.+|..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4999999999995444 799999999963
No 24
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=35.25 E-value=37 Score=27.44 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCcccCEEEEeeeccCcccceeeEEEEEecc
Q 003298 292 RVSVGMRFRMLFETEESSVRRYMGTITGISD 322 (833)
Q Consensus 292 ~ws~GMRFrM~fEtEdss~rry~GTI~gv~d 322 (833)
.|.+|+.+-..|..+. .||.++|+++..
T Consensus 3 ~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 6999999999995333 799999999964
No 25
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=34.81 E-value=34 Score=29.51 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=29.5
Q ss_pred hhhhhccCCcCCCEEEEEEc-cCCcEEEEEEecCC
Q 003298 198 SVFVSAKRLVAGDSVLFIWN-EKNQLLLGIRRATR 231 (833)
Q Consensus 198 s~FVr~K~L~aGDsVvF~R~-e~G~L~VGIRRa~r 231 (833)
..++++-+|+.||.+...-+ .+|++.++.+|-++
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 48999999999999999886 58889999998543
No 26
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=34.49 E-value=36 Score=28.06 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCcccCEEEEeeeccCcccceeeEEEEEeccCCCCCCCCCCceeeEEeeCCCC
Q 003298 291 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDEST 344 (833)
Q Consensus 291 ~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~ 344 (833)
..|.+|+.+.-.|..+. .||.++|.+|.... ....|...+=+
T Consensus 7 ~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~---------~~~~V~fvdYG 48 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN---------GTAAITFAGYG 48 (64)
T ss_dssp SCCCTTCEEEEECTTTS---SEEEEEEEEEETTT---------TEEEEEETTTT
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEecC
Confidence 47999999999995443 79999999997421 24677777654
No 27
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=34.33 E-value=12 Score=40.11 Aligned_cols=6 Identities=17% Similarity=0.528 Sum_probs=2.7
Q ss_pred CEEEEe
Q 003298 40 SRVVYF 45 (833)
Q Consensus 40 s~V~YF 45 (833)
+.++|.
T Consensus 6 tltvw~ 11 (449)
T 3iot_A 6 KLVIWI 11 (449)
T ss_dssp SEEEEC
T ss_pred eEEEEe
Confidence 444453
No 28
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=33.80 E-value=51 Score=29.51 Aligned_cols=53 Identities=9% Similarity=0.202 Sum_probs=38.7
Q ss_pred CCCcccCEEEEeeeccCcccceeeEEEEEeccCCCCCCCCCCceeeEEeeCCCCCCCCCCCccccccccCC
Q 003298 291 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 361 (833)
Q Consensus 291 ~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~~~~~RVSPWEIEpv~ 361 (833)
..|++|+++-..+ ++- ++|-+||++|... ....|.+++.. .+.|.+=+|.|++
T Consensus 20 ~~f~vGd~VlArW-~D~---~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 20 SEFQINEQVLACW-SDC---RFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp -CCCTTCEEEEEC-TTS---CEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cccccCCEEEEEe-CCC---CEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCC
Confidence 4799999999999 432 8999999999852 36899999843 3445555555543
No 29
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=32.66 E-value=2.1e+02 Score=27.53 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCCC------cceechHHHHHHHhcCCCcccCEEEEeeeccCcccceeeEEEEEecc
Q 003298 250 LLAAAAHAAATNSRFTIFYNPRASPS------EFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 322 (833)
Q Consensus 250 vla~Aa~aaat~~~F~V~Y~PRas~s------EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d 322 (833)
-+.+|......|..++|+--|-.... =..||++.+-+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 56 G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~--~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 56 GLDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR--GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp HHHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT--TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc--cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 36678888888999999865544332 267888877553 245888999975 332 589999975
No 30
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.45 E-value=45 Score=28.76 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCCcccCEEEEeeeccCcccceeeEEEEEeccCCCCCCCCCCceeeEEeeCCC
Q 003298 291 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDES 343 (833)
Q Consensus 291 ~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~ 343 (833)
..|.+|+++.-.|. +. .||.+||++|.+ + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DC---RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-SS---SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-CC---CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 33 799999999964 1 3468888865
No 31
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.29 E-value=35 Score=33.53 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.9
Q ss_pred ccCCcCCCEEEEEEccCCcEEEEEE
Q 003298 203 AKRLVAGDSVLFIWNEKNQLLLGIR 227 (833)
Q Consensus 203 ~K~L~aGDsVvF~R~e~G~L~VGIR 227 (833)
-..|++||.|-|+++.+|+|.+.|-
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEES
T ss_pred ccccCCCCEEEEEEcCCcEEEEEEC
Confidence 3467899999999999999999874
No 32
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=27.61 E-value=95 Score=27.49 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=41.4
Q ss_pred ceEEEeccccceeeeccCCCCChHHHHHHHHHhhCCCCCCCCCCCCCeEEEEEe-CCCCeEEeccC
Q 003298 766 TFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVD-RENDVLLLGDD 830 (833)
Q Consensus 766 ~fVKV~m~G~iGRkiDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvY~D-~EgD~mLvGDv 830 (833)
.=|||+=. +---|.+..=-+|.+|+..|.+-+++.+ ..=+|-|.| .+|.|++.+|.
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~-------~~~~LsYk~~~s~~~vi~~d~ 62 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRL-------EHTKLSYRPRDSNELVPLSED 62 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCG-------GGCCEEECCTTCSSCEECCTT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCc-------ceeEEEeeCCCCCCeeccChH
Confidence 45677665 6777888888899999999999998853 123777877 46666677764
No 33
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=26.85 E-value=56 Score=29.03 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=30.9
Q ss_pred CCCcccCEEEEeeeccCcccceeeEEEEEeccCCCCCCCCCCceeeEEeeCCCC
Q 003298 291 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDEST 344 (833)
Q Consensus 291 ~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~ 344 (833)
..|.+|+.+...|..+. .||.++|++|.... ....|.-.+=+
T Consensus 9 ~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~~~---------~~~~V~fiDYG 50 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDG---CIYPATIASIDFKR---------ETCVVVYTGYG 50 (88)
T ss_dssp CCCCSSCEEEEECTTTC---CEEEEEEEEEETTT---------TEEEEEETTTC
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEecCCC---------CEEEEEEecCC
Confidence 47999999999994333 79999999996421 24567776544
No 34
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=25.43 E-value=57 Score=31.25 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=32.0
Q ss_pred eEEEEEecCCCeEEEEEEE---------eCCCCceee--cccchhhhhccCCcCCCEEEE
Q 003298 166 QELIARDLHDNEWKFRHIF---------RGQPKRHLL--TTGWSVFVSAKRLVAGDSVLF 214 (833)
Q Consensus 166 q~L~~~Dl~G~~W~FR~iy---------rg~pkrhlL--TtGWs~FVr~K~L~aGDsVvF 214 (833)
.++.+.|..|++=....-- ...+-+|+| ..||. .+.++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLA---ARLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHH---HHHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChH---HHcCCCCCCEEeC
Confidence 5688888888766554311 112346888 67876 8899999999975
No 35
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=22.18 E-value=1.6e+02 Score=26.35 Aligned_cols=46 Identities=17% Similarity=0.061 Sum_probs=34.8
Q ss_pred ceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhhccCCcCCCEEEEEEc----cCCcEEEEEEecC
Q 003298 165 AQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN----EKNQLLLGIRRAT 230 (833)
Q Consensus 165 ~q~L~~~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FVr~K~L~aGDsVvF~R~----e~G~L~VGIRRa~ 230 (833)
...+.+.|.+| ..+++.|+.. |++||+|.+... -+|.+.+.+-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 56789999999 5777777543 889999998743 3787887776543
No 36
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=21.30 E-value=1.2e+02 Score=38.09 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=34.0
Q ss_pred cCCCcccCEEEEeeeccCcccceeeEEEEEeccCCCCCCCCCCceeeEEeeCCCCCC
Q 003298 290 HTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAG 346 (833)
Q Consensus 290 ~~~ws~GMRFrM~fEtEdss~rry~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~ 346 (833)
...+..|+||.|.=+.-..+. -..|||+||.... .=.+|+|=||++=.+
T Consensus 1063 ~Q~F~LGDRVv~VqdsG~VPl-~~kGTVVGi~~~~-------~~~~ldVvFD~~F~~ 1111 (1155)
T 3pie_A 1063 SQRFHLGDRVMYIQDSGKVPL-HSKGTVVGYTSIG-------KNVSIQVLFDNEIIA 1111 (1155)
T ss_pred CCcccCCCeEEEecCCCCCcc-ccceEEEEEecCC-------CceEEEEEeccCccC
Confidence 456999999998653322221 2489999998632 246899999988543
No 37
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=20.97 E-value=89 Score=27.52 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=18.0
Q ss_pred ccCCcCCCEEEEEEc-cCCcEEE-EEEe
Q 003298 203 AKRLVAGDSVLFIWN-EKNQLLL-GIRR 228 (833)
Q Consensus 203 ~K~L~aGDsVvF~R~-e~G~L~V-GIRR 228 (833)
-++|++||.|.|.-. .+|.+.| .|++
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 86 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 86 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 467999999999764 4555554 5553
No 38
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=20.94 E-value=42 Score=29.85 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=15.4
Q ss_pred hhccCCcCCCEEEEEEcc
Q 003298 201 VSAKRLVAGDSVLFIWNE 218 (833)
Q Consensus 201 Vr~K~L~aGDsVvF~R~e 218 (833)
...|+.++||+|+|--..
T Consensus 19 a~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTCCBCTTCEEEEECCT
T ss_pred ccCceEcCCCEEEEEecC
Confidence 578999999999997654
No 39
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=20.47 E-value=2e+02 Score=25.20 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=37.6
Q ss_pred CceeEEEeeccccCCCCCceeeecchhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhhc
Q 003298 124 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 203 (833)
Q Consensus 124 ~~~lF~K~LT~SDV~~~GrfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FVr~ 203 (833)
......++++..++.. |..-+.+ ......+.+.|..| ..|.+. |...+..
T Consensus 13 ~v~i~~~V~~~~~~r~--------------~~~~~G~-~~~v~~~~l~DeTG---~I~~tl------------W~~~~~~ 62 (97)
T 3e0e_A 13 SGTINAEVVTAYPKKE--------------FSRKDGT-KGQLKSLFLKDDTG---SIRGTL------------WNELADF 62 (97)
T ss_dssp EEEEEEEEEEECCCEE--------------EC----C-CEEEEEEEEEETTE---EEEEEE------------EGGGGGC
T ss_pred cEEEEEEEEECCCceE--------------EEcCCCC-eeEEEEEEEECCCC---cEEEEE------------ECCcccc
Confidence 4566778887776643 1111100 01355688889888 555554 4555544
Q ss_pred cCCcCCCEEEEEEc
Q 003298 204 KRLVAGDSVLFIWN 217 (833)
Q Consensus 204 K~L~aGDsVvF~R~ 217 (833)
.|++||.|.| ++
T Consensus 63 -~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 63 -EVKKGDIAEV-SG 74 (97)
T ss_dssp -CCCTTCEEEE-EE
T ss_pred -ccCCCCEEEE-EE
Confidence 8999999999 54
No 40
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=20.44 E-value=91 Score=26.75 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=30.4
Q ss_pred CCcccCEEEEeeeccCcccceeeEEEEEeccCCCCCCCCCCceeeEEeeCCCC
Q 003298 292 RVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDEST 344 (833)
Q Consensus 292 ~ws~GMRFrM~fEtEdss~rry~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~ 344 (833)
.|.+|+.+-..|..+. .||.++|++|.... ....|...+-+
T Consensus 17 ~~kvGd~C~A~ys~Dg---~wYRA~I~~i~~~~---------~~~~V~fvDYG 57 (77)
T 3pnw_C 17 MWKPGDECFALYWEDN---KFYRAEVEALHSSG---------MTAVVKFIDYG 57 (77)
T ss_dssp TCCTTCEEEEEETTTT---EEEEEEEEEECTTS---------SEEEEEETTTC
T ss_pred CCCcCCEEEEEECCCC---CEEEEEEEEEeCCC---------CEEEEEEEcCC
Confidence 6999999999994443 79999999996421 34567776554
Done!