Query 003300
Match_columns 832
No_of_seqs 546 out of 3944
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 20:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-63 6.1E-68 569.4 34.8 631 13-687 8-785 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.1E-53 2E-57 511.5 41.9 611 135-808 133-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6E-34 1.3E-38 297.8 12.0 245 185-436 1-269 (287)
4 PLN00113 leucine-rich repeat r 99.9 6.1E-23 1.3E-27 251.4 15.2 228 439-689 112-349 (968)
5 KOG4194 Membrane glycoprotein 99.9 6.6E-23 1.4E-27 211.6 2.6 319 438-804 95-428 (873)
6 PLN00113 leucine-rich repeat r 99.9 1.2E-21 2.7E-26 240.0 13.6 306 463-805 239-584 (968)
7 KOG0444 Cytoskeletal regulator 99.8 2.4E-23 5.2E-28 216.0 -5.5 294 463-807 81-377 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.4E-26 203.8 -3.7 313 443-806 30-353 (1255)
9 KOG4194 Membrane glycoprotein 99.8 9.1E-21 2E-25 196.0 2.0 311 444-801 124-448 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 1.3E-21 2.9E-26 193.5 -8.1 192 463-683 117-308 (565)
11 PLN03210 Resistant to P. syrin 99.8 3.5E-18 7.5E-23 209.3 16.7 309 445-806 589-944 (1153)
12 PRK15387 E3 ubiquitin-protein 99.6 2E-15 4.4E-20 171.1 12.7 253 464-804 205-457 (788)
13 KOG0618 Serine/threonine phosp 99.6 1.6E-17 3.5E-22 181.6 -4.5 94 446-540 46-147 (1081)
14 KOG0472 Leucine-rich repeat pr 99.6 8.7E-18 1.9E-22 166.7 -10.5 266 461-806 46-311 (565)
15 KOG0618 Serine/threonine phosp 99.5 1.9E-15 4.1E-20 165.7 -4.6 286 443-781 197-489 (1081)
16 PRK15387 E3 ubiquitin-protein 99.4 2.9E-13 6.3E-18 153.7 11.3 253 447-784 203-461 (788)
17 PRK15370 E3 ubiquitin-protein 99.4 1.2E-13 2.5E-18 158.1 7.5 57 738-804 367-427 (754)
18 PRK15370 E3 ubiquitin-protein 99.3 2E-12 4.3E-17 148.1 9.5 96 462-569 201-296 (754)
19 KOG0617 Ras suppressor protein 99.3 6.3E-14 1.4E-18 123.2 -3.9 102 463-567 36-138 (264)
20 TIGR03015 pepcterm_ATPase puta 99.3 5.8E-10 1.3E-14 115.3 24.4 183 206-393 42-242 (269)
21 KOG0617 Ras suppressor protein 99.3 1.9E-13 4.2E-18 120.2 -3.5 121 444-567 32-161 (264)
22 KOG4237 Extracellular matrix p 99.2 2.8E-13 6.1E-18 135.0 -4.2 119 463-583 70-191 (498)
23 PF01637 Arch_ATPase: Archaeal 99.2 8.6E-11 1.9E-15 118.9 12.4 196 182-388 1-233 (234)
24 PRK00411 cdc6 cell division co 99.2 6.7E-10 1.4E-14 121.7 20.1 227 178-408 28-281 (394)
25 KOG4237 Extracellular matrix p 99.2 4E-13 8.7E-18 133.9 -7.3 115 465-583 51-167 (498)
26 KOG4658 Apoptotic ATPase [Sign 99.1 5.4E-11 1.2E-15 138.6 6.4 150 463-621 526-678 (889)
27 TIGR02928 orc1/cdc6 family rep 99.1 8.4E-09 1.8E-13 111.8 21.1 205 178-385 13-242 (365)
28 cd00116 LRR_RI Leucine-rich re 99.1 5.1E-12 1.1E-16 134.6 -5.1 274 479-803 19-318 (319)
29 PF05729 NACHT: NACHT domain 99.0 2.5E-09 5.4E-14 101.6 12.3 143 208-356 1-163 (166)
30 PRK04841 transcriptional regul 99.0 8.2E-09 1.8E-13 126.4 19.6 196 179-396 13-232 (903)
31 cd00116 LRR_RI Leucine-rich re 99.0 5.9E-11 1.3E-15 126.4 -2.3 268 488-807 3-293 (319)
32 PRK06893 DNA replication initi 98.8 8.2E-08 1.8E-12 95.6 14.3 153 207-390 39-204 (229)
33 PTZ00112 origin recognition co 98.8 2.4E-07 5.2E-12 103.6 18.4 179 179-358 754-951 (1164)
34 PRK00080 ruvB Holliday junctio 98.8 8E-08 1.7E-12 101.7 13.5 193 180-391 25-224 (328)
35 PF13401 AAA_22: AAA domain; P 98.7 4.5E-08 9.8E-13 88.7 9.1 118 206-325 3-125 (131)
36 TIGR00635 ruvB Holliday juncti 98.7 1.8E-07 3.9E-12 98.5 14.8 193 180-391 4-203 (305)
37 COG2256 MGS1 ATPase related to 98.7 6.7E-08 1.4E-12 98.2 10.7 153 205-384 46-207 (436)
38 TIGR03420 DnaA_homol_Hda DnaA 98.7 3.7E-07 8E-12 91.6 15.6 169 186-391 23-203 (226)
39 KOG0532 Leucine-rich repeat (L 98.7 4.6E-10 9.9E-15 117.6 -5.8 95 463-560 101-195 (722)
40 PRK13342 recombination factor 98.6 4.7E-07 1E-11 98.9 14.7 177 180-390 12-197 (413)
41 PTZ00202 tuzin; Provisional 98.6 4.3E-06 9.4E-11 86.9 20.5 164 176-355 258-433 (550)
42 PRK14961 DNA polymerase III su 98.6 1.8E-06 3.8E-11 92.5 18.2 175 180-385 16-216 (363)
43 PF14580 LRR_9: Leucine-rich r 98.6 1.3E-08 2.9E-13 94.8 1.4 76 463-541 22-99 (175)
44 PF13191 AAA_16: AAA ATPase do 98.6 1.8E-07 3.8E-12 90.7 8.4 47 181-230 1-47 (185)
45 PRK14960 DNA polymerase III su 98.6 2E-06 4.2E-11 95.1 17.0 178 180-387 15-217 (702)
46 PF14580 LRR_9: Leucine-rich r 98.5 1.5E-08 3.3E-13 94.4 0.4 143 467-619 4-148 (175)
47 PF13173 AAA_14: AAA domain 98.5 3.8E-07 8.2E-12 81.9 9.5 119 208-348 3-127 (128)
48 COG1474 CDC6 Cdc6-related prot 98.5 6.1E-06 1.3E-10 87.2 19.4 198 180-381 17-229 (366)
49 PRK07003 DNA polymerase III su 98.5 2.8E-06 6E-11 95.0 17.1 182 180-391 16-223 (830)
50 PRK05564 DNA polymerase III su 98.5 3.1E-06 6.8E-11 89.0 17.0 178 180-387 4-188 (313)
51 PRK14949 DNA polymerase III su 98.5 2.5E-06 5.3E-11 97.4 16.8 181 180-387 16-218 (944)
52 PF05496 RuvB_N: Holliday junc 98.5 8.8E-07 1.9E-11 84.3 11.1 178 179-389 23-221 (233)
53 PRK14963 DNA polymerase III su 98.5 5.3E-07 1.2E-11 99.5 11.1 195 180-386 14-214 (504)
54 COG2909 MalT ATP-dependent tra 98.5 4.8E-06 1E-10 92.9 18.0 198 180-396 19-240 (894)
55 COG4886 Leucine-rich repeat (L 98.5 5.2E-08 1.1E-12 106.9 2.6 175 462-688 118-293 (394)
56 cd00009 AAA The AAA+ (ATPases 98.5 1.1E-06 2.3E-11 81.6 11.0 125 183-327 1-131 (151)
57 KOG0532 Leucine-rich repeat (L 98.5 9.3E-09 2E-13 108.0 -3.7 99 463-567 124-222 (722)
58 TIGR02903 spore_lon_C ATP-depe 98.5 5.1E-05 1.1E-09 86.5 25.9 203 180-393 154-399 (615)
59 PRK12323 DNA polymerase III su 98.5 4.5E-06 9.8E-11 92.1 16.5 178 180-387 16-223 (700)
60 PRK12402 replication factor C 98.4 6.5E-06 1.4E-10 88.2 17.6 196 180-388 15-225 (337)
61 PRK06645 DNA polymerase III su 98.4 1E-05 2.2E-10 89.0 17.8 192 180-386 21-226 (507)
62 PF13855 LRR_8: Leucine rich r 98.4 3.4E-07 7.4E-12 69.8 4.5 57 484-540 2-59 (61)
63 PRK14957 DNA polymerase III su 98.4 9.9E-06 2.2E-10 89.7 17.6 185 180-391 16-223 (546)
64 PRK08727 hypothetical protein; 98.4 1.4E-05 3.1E-10 79.7 17.3 148 208-386 42-201 (233)
65 KOG1909 Ran GTPase-activating 98.4 3.6E-08 7.8E-13 97.9 -1.3 173 480-683 27-224 (382)
66 KOG1259 Nischarin, modulator o 98.4 5.4E-08 1.2E-12 94.1 -0.4 101 463-569 287-387 (490)
67 PRK00440 rfc replication facto 98.4 1.1E-05 2.5E-10 85.6 17.4 180 180-386 17-200 (319)
68 PRK07994 DNA polymerase III su 98.4 6.8E-06 1.5E-10 92.4 15.9 191 180-386 16-217 (647)
69 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.1E-12 102.4 3.6 188 464-703 97-286 (394)
70 PLN03150 hypothetical protein; 98.4 3.2E-07 7E-12 105.3 5.4 98 463-560 421-521 (623)
71 PRK14964 DNA polymerase III su 98.4 1.4E-05 3E-10 87.1 17.6 180 180-385 13-213 (491)
72 PRK08903 DnaA regulatory inact 98.4 1.2E-05 2.6E-10 80.5 16.0 153 206-393 41-203 (227)
73 KOG1259 Nischarin, modulator o 98.4 9.6E-08 2.1E-12 92.4 0.7 134 610-786 283-416 (490)
74 PRK14956 DNA polymerase III su 98.4 2.8E-06 6E-11 91.3 11.8 194 180-385 18-218 (484)
75 PLN03025 replication factor C 98.4 1.2E-05 2.6E-10 84.8 16.4 181 180-385 13-196 (319)
76 PRK14962 DNA polymerase III su 98.3 2.4E-05 5.3E-10 85.8 18.9 201 180-407 14-240 (472)
77 PRK14958 DNA polymerase III su 98.3 1.1E-05 2.4E-10 89.5 16.3 181 180-386 16-217 (509)
78 PRK04195 replication factor C 98.3 1.5E-05 3.3E-10 89.0 17.4 181 180-388 14-201 (482)
79 PRK08691 DNA polymerase III su 98.3 1.3E-05 2.9E-10 89.6 16.5 187 180-393 16-225 (709)
80 TIGR02397 dnaX_nterm DNA polym 98.3 3E-05 6.5E-10 83.7 19.1 182 180-389 14-218 (355)
81 cd01128 rho_factor Transcripti 98.3 9.7E-07 2.1E-11 87.9 6.8 90 206-296 15-113 (249)
82 PRK14951 DNA polymerase III su 98.3 1.6E-05 3.4E-10 89.3 16.9 196 180-388 16-224 (618)
83 KOG2227 Pre-initiation complex 98.3 3E-05 6.4E-10 80.7 16.8 180 178-359 148-341 (529)
84 PRK05896 DNA polymerase III su 98.3 2.2E-05 4.8E-10 87.0 16.9 196 180-391 16-223 (605)
85 KOG3207 Beta-tubulin folding c 98.3 1.4E-07 3E-12 96.4 -0.2 70 472-541 110-183 (505)
86 PRK13341 recombination factor 98.3 8E-06 1.7E-10 93.9 13.8 172 180-384 28-212 (725)
87 KOG2028 ATPase related to the 98.3 1.5E-05 3.2E-10 79.8 13.6 157 205-383 160-330 (554)
88 PRK09112 DNA polymerase III su 98.3 2.8E-05 6E-10 82.0 16.6 196 179-389 22-240 (351)
89 PRK08084 DNA replication initi 98.3 4.8E-05 1E-09 76.1 17.6 153 207-390 45-210 (235)
90 PRK07471 DNA polymerase III su 98.3 4.2E-05 9.1E-10 81.2 18.0 193 180-389 19-238 (365)
91 PF05621 TniB: Bacterial TniB 98.2 3.7E-05 8E-10 77.1 15.9 201 180-383 34-255 (302)
92 PRK09087 hypothetical protein; 98.2 5.5E-05 1.2E-09 74.9 17.2 160 207-407 44-220 (226)
93 PRK07940 DNA polymerase III su 98.2 3.1E-05 6.8E-10 82.8 16.6 178 180-387 5-211 (394)
94 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.5E-11 66.1 4.9 55 463-517 4-60 (61)
95 TIGR00678 holB DNA polymerase 98.2 3.7E-05 8.1E-10 74.3 15.8 90 285-384 95-186 (188)
96 COG3899 Predicted ATPase [Gene 98.2 1.4E-05 3E-10 94.4 15.0 205 182-396 2-267 (849)
97 PRK14955 DNA polymerase III su 98.2 2.7E-05 5.9E-10 84.5 16.1 197 180-386 16-225 (397)
98 PRK05642 DNA replication initi 98.2 5.2E-05 1.1E-09 75.7 16.7 154 207-391 45-210 (234)
99 PF00308 Bac_DnaA: Bacterial d 98.2 7E-05 1.5E-09 73.9 17.0 163 206-388 33-207 (219)
100 PRK14969 DNA polymerase III su 98.2 2.5E-05 5.5E-10 87.3 15.4 182 180-391 16-223 (527)
101 PRK09111 DNA polymerase III su 98.2 4.1E-05 8.8E-10 86.3 17.0 196 180-388 24-232 (598)
102 PRK14087 dnaA chromosomal repl 98.2 6E-05 1.3E-09 82.6 17.6 168 207-390 141-320 (450)
103 PRK09376 rho transcription ter 98.2 4.7E-06 1E-10 86.4 8.2 90 206-296 168-266 (416)
104 PRK14952 DNA polymerase III su 98.2 7.9E-05 1.7E-09 83.5 18.1 198 180-393 13-224 (584)
105 KOG3207 Beta-tubulin folding c 98.2 4.2E-07 9.1E-12 93.0 0.1 124 443-568 119-258 (505)
106 PRK14959 DNA polymerase III su 98.1 7.8E-05 1.7E-09 83.2 16.8 187 180-393 16-225 (624)
107 PRK07133 DNA polymerase III su 98.1 0.00014 3E-09 82.6 18.2 192 180-389 18-220 (725)
108 KOG4341 F-box protein containi 98.1 1.9E-07 4.1E-12 94.9 -4.0 88 735-829 369-457 (483)
109 TIGR03345 VI_ClpV1 type VI sec 98.1 6.6E-05 1.4E-09 88.8 16.3 180 180-383 187-390 (852)
110 PRK07764 DNA polymerase III su 98.1 0.00011 2.5E-09 85.7 17.7 182 180-391 15-224 (824)
111 TIGR01242 26Sp45 26S proteasom 98.1 3.1E-05 6.8E-10 83.3 12.2 179 179-383 121-328 (364)
112 PRK14953 DNA polymerase III su 98.1 0.00025 5.5E-09 78.3 19.4 182 180-388 16-219 (486)
113 PRK14970 DNA polymerase III su 98.1 0.00011 2.5E-09 79.3 16.5 180 180-385 17-205 (367)
114 PRK14950 DNA polymerase III su 98.0 8E-05 1.7E-09 84.9 15.8 193 180-388 16-220 (585)
115 PRK14954 DNA polymerase III su 98.0 0.00017 3.8E-09 81.4 18.0 196 180-384 16-223 (620)
116 PLN03150 hypothetical protein; 98.0 4.1E-06 8.8E-11 96.3 5.2 91 484-576 419-510 (623)
117 COG3903 Predicted ATPase [Gene 98.0 7.3E-06 1.6E-10 84.4 5.5 182 206-397 13-197 (414)
118 PRK11331 5-methylcytosine-spec 98.0 3.7E-05 7.9E-10 81.9 10.8 120 180-310 175-297 (459)
119 PRK14971 DNA polymerase III su 98.0 0.00023 4.9E-09 81.0 17.4 176 180-386 17-219 (614)
120 PRK08451 DNA polymerase III su 98.0 0.00031 6.8E-09 77.5 17.9 180 180-389 14-218 (535)
121 KOG2120 SCF ubiquitin ligase, 98.0 1.9E-07 4E-12 90.6 -6.4 132 584-749 235-374 (419)
122 COG3267 ExeA Type II secretory 98.0 0.00073 1.6E-08 65.3 17.7 182 205-391 49-247 (269)
123 PRK14948 DNA polymerase III su 97.9 0.00038 8.3E-09 79.2 18.6 194 180-387 16-220 (620)
124 PF05673 DUF815: Protein of un 97.9 0.00034 7.4E-09 68.0 15.4 108 178-312 25-133 (249)
125 TIGR00767 rho transcription te 97.9 1.9E-05 4.1E-10 82.5 7.3 90 206-296 167-265 (415)
126 PHA02544 44 clamp loader, smal 97.9 0.00011 2.3E-09 77.9 13.3 146 180-354 21-171 (316)
127 PRK15386 type III secretion pr 97.9 2.7E-05 5.9E-10 81.8 8.0 65 480-549 49-113 (426)
128 PRK06305 DNA polymerase III su 97.9 0.00048 1E-08 75.7 17.7 182 180-389 17-223 (451)
129 COG2255 RuvB Holliday junction 97.9 0.00019 4.2E-09 70.0 12.7 174 180-386 26-220 (332)
130 KOG2543 Origin recognition com 97.9 0.00048 1E-08 70.1 16.0 168 179-356 5-193 (438)
131 PRK14965 DNA polymerase III su 97.9 0.0006 1.3E-08 77.4 18.9 210 180-405 16-240 (576)
132 TIGR02639 ClpA ATP-dependent C 97.9 0.00015 3.2E-09 85.3 14.5 156 181-357 183-359 (731)
133 TIGR00362 DnaA chromosomal rep 97.9 0.00044 9.6E-09 75.7 17.1 180 207-408 136-336 (405)
134 KOG0989 Replication factor C, 97.9 0.00011 2.3E-09 72.6 10.7 182 180-382 36-223 (346)
135 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.3E-10 55.3 3.4 34 484-517 2-35 (44)
136 CHL00181 cbbX CbbX; Provisiona 97.9 0.0008 1.7E-08 69.2 17.5 137 207-359 59-212 (287)
137 PRK12422 chromosomal replicati 97.8 0.0012 2.5E-08 72.4 19.5 154 207-382 141-306 (445)
138 PF14516 AAA_35: AAA-like doma 97.8 0.0016 3.4E-08 68.8 20.0 202 178-396 9-246 (331)
139 TIGR02881 spore_V_K stage V sp 97.8 0.00029 6.3E-09 72.0 14.0 162 181-358 7-193 (261)
140 PRK06620 hypothetical protein; 97.8 0.00069 1.5E-08 66.5 15.9 134 208-386 45-186 (214)
141 CHL00095 clpC Clp protease ATP 97.8 0.00027 6E-09 84.1 15.6 152 181-355 180-353 (821)
142 PRK06647 DNA polymerase III su 97.8 0.00071 1.5E-08 76.1 18.0 191 180-386 16-217 (563)
143 KOG2120 SCF ubiquitin ligase, 97.8 6.7E-07 1.4E-11 86.8 -5.4 177 463-683 188-374 (419)
144 PRK14088 dnaA chromosomal repl 97.8 0.00045 9.8E-09 75.8 15.5 158 207-385 130-301 (440)
145 PRK00149 dnaA chromosomal repl 97.8 0.00091 2E-08 74.2 17.9 181 206-408 147-348 (450)
146 KOG1909 Ran GTPase-activating 97.8 7.1E-06 1.5E-10 81.9 0.8 69 605-683 179-252 (382)
147 PRK05563 DNA polymerase III su 97.8 0.0011 2.5E-08 74.8 18.5 190 180-385 16-216 (559)
148 PRK03992 proteasome-activating 97.8 0.00021 4.5E-09 77.3 12.0 177 180-382 131-336 (389)
149 TIGR02880 cbbX_cfxQ probable R 97.8 0.0008 1.7E-08 69.3 15.7 134 209-358 60-210 (284)
150 PRK14086 dnaA chromosomal repl 97.7 0.0015 3.2E-08 72.9 18.4 156 207-384 314-483 (617)
151 PRK07399 DNA polymerase III su 97.7 0.0013 2.8E-08 68.5 16.8 195 180-388 4-220 (314)
152 KOG0531 Protein phosphatase 1, 97.7 6.5E-06 1.4E-10 90.4 -0.2 33 651-683 234-266 (414)
153 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00048 1E-08 82.3 15.0 153 181-356 174-349 (852)
154 PRK05707 DNA polymerase III su 97.7 0.0014 3.1E-08 68.6 16.5 97 285-389 105-203 (328)
155 PF00004 AAA: ATPase family as 97.7 0.00014 3.1E-09 65.7 8.0 96 210-325 1-111 (132)
156 PF12799 LRR_4: Leucine Rich r 97.7 4.4E-05 9.5E-10 53.1 3.4 39 462-500 3-41 (44)
157 PF10443 RNA12: RNA12 protein; 97.6 0.0027 5.9E-08 66.8 17.4 212 185-408 1-298 (431)
158 PRK11034 clpA ATP-dependent Cl 97.6 0.001 2.2E-08 77.3 15.3 155 181-356 187-362 (758)
159 KOG1514 Origin recognition com 97.6 0.0024 5.2E-08 70.3 16.9 207 180-392 396-624 (767)
160 PRK08116 hypothetical protein; 97.6 0.00034 7.3E-09 71.2 10.1 104 208-326 115-221 (268)
161 PRK10865 protein disaggregatio 97.5 0.0013 2.8E-08 78.4 15.3 153 180-356 178-354 (857)
162 smart00382 AAA ATPases associa 97.5 0.00049 1.1E-08 63.0 9.5 87 208-298 3-90 (148)
163 PTZ00361 26 proteosome regulat 97.5 0.0006 1.3E-08 73.8 11.3 204 180-408 183-423 (438)
164 KOG2982 Uncharacterized conser 97.5 7E-05 1.5E-09 73.1 3.5 67 610-689 198-266 (418)
165 COG0542 clpA ATP-binding subun 97.5 0.003 6.5E-08 72.0 16.4 133 181-324 492-642 (786)
166 COG0593 DnaA ATPase involved i 97.5 0.0012 2.6E-08 69.8 12.2 137 206-359 112-260 (408)
167 TIGR00602 rad24 checkpoint pro 97.4 0.001 2.2E-08 75.1 12.1 50 180-230 84-133 (637)
168 KOG0531 Protein phosphatase 1, 97.4 2.4E-05 5.2E-10 86.0 -1.0 99 463-567 98-197 (414)
169 PRK10536 hypothetical protein; 97.4 0.003 6.5E-08 62.4 13.3 135 180-326 55-213 (262)
170 KOG4579 Leucine-rich repeat (L 97.4 1.2E-05 2.7E-10 69.1 -2.8 94 465-560 32-129 (177)
171 PF13177 DNA_pol3_delta2: DNA 97.4 0.0024 5.2E-08 59.6 12.2 139 184-344 1-162 (162)
172 TIGR03689 pup_AAA proteasome A 97.3 0.0022 4.8E-08 70.5 12.9 165 180-356 182-378 (512)
173 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0064 1.4E-07 62.0 15.6 140 209-355 23-197 (262)
174 COG1373 Predicted ATPase (AAA+ 97.3 0.0026 5.6E-08 68.8 13.4 119 209-352 39-163 (398)
175 PTZ00454 26S protease regulato 97.3 0.0051 1.1E-07 66.2 15.5 205 180-409 145-386 (398)
176 PRK12377 putative replication 97.3 0.00069 1.5E-08 67.6 7.8 102 207-325 101-205 (248)
177 PRK08769 DNA polymerase III su 97.3 0.009 2E-07 62.0 16.0 95 285-389 112-208 (319)
178 TIGR00763 lon ATP-dependent pr 97.2 0.055 1.2E-06 64.3 23.6 165 180-356 320-505 (775)
179 PRK06090 DNA polymerase III su 97.2 0.014 3E-07 60.6 16.3 165 189-389 12-201 (319)
180 PF07693 KAP_NTPase: KAP famil 97.2 0.022 4.7E-07 60.6 18.6 42 186-230 2-43 (325)
181 PRK08058 DNA polymerase III su 97.2 0.006 1.3E-07 64.4 13.9 162 181-354 6-180 (329)
182 PRK07952 DNA replication prote 97.2 0.0027 5.9E-08 63.2 10.6 103 207-325 99-204 (244)
183 PRK10865 protein disaggregatio 97.2 0.0071 1.5E-07 72.1 15.9 138 180-325 568-720 (857)
184 KOG1859 Leucine-rich repeat pr 97.2 1.1E-05 2.3E-10 87.9 -6.8 102 462-568 189-291 (1096)
185 CHL00176 ftsH cell division pr 97.2 0.0058 1.3E-07 69.8 14.5 207 180-411 183-425 (638)
186 KOG0991 Replication factor C, 97.2 0.004 8.7E-08 58.9 10.8 44 180-229 27-70 (333)
187 PRK08181 transposase; Validate 97.2 0.0013 2.8E-08 66.5 8.3 101 208-326 107-209 (269)
188 PRK15386 type III secretion pr 97.2 0.0013 2.9E-08 69.4 8.5 63 605-687 46-109 (426)
189 PF04665 Pox_A32: Poxvirus A32 97.2 0.0008 1.7E-08 66.0 6.4 36 208-245 14-49 (241)
190 TIGR02639 ClpA ATP-dependent C 97.1 0.0054 1.2E-07 72.3 14.3 119 181-312 455-579 (731)
191 PRK13531 regulatory ATPase Rav 97.1 0.002 4.3E-08 69.6 9.5 153 180-355 20-193 (498)
192 PRK08118 topology modulation p 97.1 0.00025 5.5E-09 66.6 2.4 34 209-242 3-37 (167)
193 KOG4341 F-box protein containi 97.1 2.6E-05 5.6E-10 79.8 -4.7 264 483-809 138-418 (483)
194 KOG2004 Mitochondrial ATP-depe 97.1 0.011 2.4E-07 65.3 14.8 166 179-356 410-596 (906)
195 COG2607 Predicted ATPase (AAA+ 97.1 0.012 2.5E-07 56.4 13.0 105 180-313 60-167 (287)
196 PF01695 IstB_IS21: IstB-like 97.1 0.00092 2E-08 63.4 5.9 102 206-326 46-150 (178)
197 PRK06921 hypothetical protein; 97.1 0.0029 6.4E-08 64.3 9.8 99 207-325 117-224 (266)
198 KOG1644 U2-associated snRNP A' 97.1 0.00081 1.7E-08 62.4 4.9 76 463-540 45-123 (233)
199 PRK06871 DNA polymerase III su 97.1 0.025 5.5E-07 58.8 16.5 92 285-385 106-199 (325)
200 KOG3665 ZYG-1-like serine/thre 97.0 0.00019 4E-09 82.5 0.8 134 483-622 122-261 (699)
201 PRK09183 transposase/IS protei 97.0 0.0031 6.6E-08 64.0 9.3 102 207-326 102-206 (259)
202 TIGR01241 FtsH_fam ATP-depende 97.0 0.0086 1.9E-07 67.3 13.9 207 180-411 55-297 (495)
203 KOG4579 Leucine-rich repeat (L 97.0 7.9E-05 1.7E-09 64.2 -1.8 75 465-540 58-133 (177)
204 PRK04296 thymidine kinase; Pro 97.0 0.0019 4E-08 62.3 7.4 113 208-327 3-117 (190)
205 PRK08939 primosomal protein Dn 97.0 0.0038 8.3E-08 64.7 9.8 122 184-325 135-260 (306)
206 PRK05541 adenylylsulfate kinas 97.0 0.0042 9.2E-08 59.2 9.5 37 206-244 6-42 (176)
207 PRK10787 DNA-binding ATP-depen 97.0 0.0022 4.8E-08 75.2 8.9 165 180-356 322-506 (784)
208 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0034 7.3E-08 74.6 10.5 137 180-325 566-718 (852)
209 KOG1859 Leucine-rich repeat pr 97.0 4.6E-05 1E-09 83.1 -4.6 100 440-542 182-291 (1096)
210 PRK06526 transposase; Provisio 97.0 0.0022 4.9E-08 64.5 7.6 101 207-326 98-201 (254)
211 PF07728 AAA_5: AAA domain (dy 96.9 0.00034 7.5E-09 63.8 1.6 88 210-310 2-89 (139)
212 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0049 1.1E-07 73.8 11.4 138 180-325 565-717 (852)
213 PRK12608 transcription termina 96.9 0.0056 1.2E-07 64.0 10.1 101 188-295 119-229 (380)
214 COG0466 Lon ATP-dependent Lon 96.9 0.0029 6.3E-08 70.0 8.1 166 179-356 322-508 (782)
215 COG2812 DnaX DNA polymerase II 96.9 0.0028 6E-08 69.3 7.9 189 180-384 16-215 (515)
216 PF02562 PhoH: PhoH-like prote 96.9 0.0036 7.8E-08 60.1 7.8 130 185-326 5-156 (205)
217 PRK07993 DNA polymerase III su 96.9 0.043 9.3E-07 57.8 16.5 176 188-386 10-201 (334)
218 PRK09361 radB DNA repair and r 96.9 0.006 1.3E-07 60.9 9.7 46 206-254 22-67 (225)
219 COG0470 HolB ATPase involved i 96.9 0.0058 1.3E-07 65.0 10.3 147 181-347 2-172 (325)
220 CHL00095 clpC Clp protease ATP 96.8 0.0038 8.2E-08 74.5 9.6 136 180-325 509-661 (821)
221 PRK04132 replication factor C 96.8 0.03 6.4E-07 65.5 16.3 152 215-386 574-728 (846)
222 KOG2228 Origin recognition com 96.8 0.016 3.6E-07 58.3 12.2 172 180-356 24-219 (408)
223 TIGR02237 recomb_radB DNA repa 96.8 0.0049 1.1E-07 60.8 8.6 48 206-256 11-58 (209)
224 PF05659 RPW8: Arabidopsis bro 96.8 0.03 6.5E-07 50.6 12.8 83 2-84 3-85 (147)
225 COG1484 DnaC DNA replication p 96.8 0.0049 1.1E-07 62.1 8.6 82 206-304 104-185 (254)
226 COG1222 RPT1 ATP-dependent 26S 96.8 0.049 1.1E-06 55.6 15.4 202 181-408 152-391 (406)
227 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0017 3.6E-08 67.6 5.3 50 181-230 52-101 (361)
228 KOG0741 AAA+-type ATPase [Post 96.8 0.016 3.5E-07 61.7 12.4 149 204-379 535-704 (744)
229 PRK06964 DNA polymerase III su 96.8 0.03 6.5E-07 58.8 14.6 91 285-387 131-223 (342)
230 PRK07261 topology modulation p 96.8 0.0031 6.7E-08 59.6 6.7 64 209-295 2-66 (171)
231 COG5238 RNA1 Ran GTPase-activa 96.8 0.0012 2.6E-08 63.9 3.6 78 463-540 33-130 (388)
232 PF14532 Sigma54_activ_2: Sigm 96.7 0.0016 3.5E-08 59.2 4.0 107 183-325 1-109 (138)
233 COG1223 Predicted ATPase (AAA+ 96.7 0.015 3.3E-07 56.2 10.3 177 180-382 121-318 (368)
234 PF00158 Sigma54_activat: Sigm 96.7 0.0048 1E-07 57.8 7.0 133 182-326 1-144 (168)
235 COG4608 AppF ABC-type oligopep 96.7 0.014 3E-07 57.6 10.4 126 206-334 38-178 (268)
236 PRK06835 DNA replication prote 96.7 0.005 1.1E-07 64.4 7.8 102 208-325 184-288 (329)
237 cd01394 radB RadB. The archaea 96.6 0.012 2.6E-07 58.3 10.0 43 206-250 18-60 (218)
238 cd01393 recA_like RecA is a b 96.6 0.013 2.9E-07 58.4 10.2 87 206-295 18-123 (226)
239 TIGR02902 spore_lonB ATP-depen 96.6 0.015 3.3E-07 65.6 11.4 45 180-230 65-109 (531)
240 KOG1969 DNA replication checkp 96.6 0.0056 1.2E-07 67.7 7.4 89 204-310 323-411 (877)
241 cd01120 RecA-like_NTPases RecA 96.6 0.014 3.1E-07 54.7 9.6 40 209-250 1-40 (165)
242 PF00448 SRP54: SRP54-type pro 96.5 0.016 3.5E-07 55.9 9.7 87 207-295 1-92 (196)
243 PRK11034 clpA ATP-dependent Cl 96.5 0.0073 1.6E-07 70.3 8.3 121 181-312 459-583 (758)
244 COG2884 FtsE Predicted ATPase 96.5 0.046 1E-06 50.6 11.6 125 206-333 27-204 (223)
245 TIGR01243 CDC48 AAA family ATP 96.5 0.021 4.6E-07 67.6 12.4 180 180-384 178-382 (733)
246 cd01133 F1-ATPase_beta F1 ATP 96.5 0.019 4.2E-07 57.7 10.1 88 206-295 68-172 (274)
247 COG1875 NYN ribonuclease and A 96.5 0.0096 2.1E-07 60.6 7.9 133 183-325 227-387 (436)
248 CHL00195 ycf46 Ycf46; Provisio 96.5 0.029 6.3E-07 62.0 12.5 155 206-383 258-429 (489)
249 TIGR01243 CDC48 AAA family ATP 96.5 0.032 6.9E-07 66.2 13.7 179 180-383 453-657 (733)
250 PF13207 AAA_17: AAA domain; P 96.5 0.0023 4.9E-08 56.7 3.2 21 209-229 1-21 (121)
251 TIGR03499 FlhF flagellar biosy 96.5 0.015 3.2E-07 60.0 9.6 88 206-295 193-281 (282)
252 PF08423 Rad51: Rad51; InterP 96.5 0.013 2.8E-07 59.3 9.0 57 206-263 37-97 (256)
253 KOG1644 U2-associated snRNP A' 96.5 0.0028 6.1E-08 58.9 3.8 126 463-593 22-150 (233)
254 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.023 4.9E-07 52.2 9.7 117 208-327 3-139 (159)
255 TIGR02012 tigrfam_recA protein 96.4 0.013 2.9E-07 60.5 9.0 83 206-295 54-142 (321)
256 KOG2982 Uncharacterized conser 96.4 0.00094 2E-08 65.5 0.5 78 463-540 74-156 (418)
257 cd03214 ABC_Iron-Siderophores_ 96.4 0.037 8.1E-07 52.9 11.4 122 206-331 24-163 (180)
258 KOG0744 AAA+-type ATPase [Post 96.4 0.032 7E-07 55.8 10.7 79 207-295 177-259 (423)
259 PRK08699 DNA polymerase III su 96.4 0.028 6.1E-07 58.9 11.2 71 285-355 112-184 (325)
260 KOG0735 AAA+-type ATPase [Post 96.4 0.053 1.1E-06 60.1 13.2 162 206-389 430-616 (952)
261 cd00983 recA RecA is a bacter 96.3 0.017 3.7E-07 59.8 9.0 83 206-295 54-142 (325)
262 PRK11889 flhF flagellar biosyn 96.3 0.061 1.3E-06 56.6 12.9 90 206-297 240-331 (436)
263 COG0542 clpA ATP-binding subun 96.3 0.011 2.4E-07 67.4 8.1 153 181-356 171-346 (786)
264 cd03247 ABCC_cytochrome_bd The 96.3 0.03 6.4E-07 53.5 10.0 118 207-330 28-161 (178)
265 PRK06696 uridine kinase; Valid 96.3 0.0088 1.9E-07 59.4 6.6 42 185-229 3-44 (223)
266 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.024 5.1E-07 57.1 9.8 50 206-255 18-71 (235)
267 PHA00729 NTP-binding motif con 96.3 0.026 5.7E-07 54.9 9.4 24 206-229 16-39 (226)
268 PF00560 LRR_1: Leucine Rich R 96.3 0.0025 5.4E-08 36.7 1.5 21 484-504 1-21 (22)
269 KOG2123 Uncharacterized conser 96.2 0.00032 6.9E-09 68.0 -3.7 95 463-560 22-123 (388)
270 PRK09354 recA recombinase A; P 96.2 0.02 4.4E-07 59.7 9.1 83 206-295 59-147 (349)
271 TIGR02238 recomb_DMC1 meiotic 96.2 0.022 4.7E-07 59.3 9.4 58 206-264 95-156 (313)
272 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.043 9.3E-07 50.2 10.3 107 206-331 25-132 (144)
273 PF07724 AAA_2: AAA domain (Cd 96.2 0.0036 7.8E-08 58.9 3.2 88 207-312 3-105 (171)
274 COG5238 RNA1 Ran GTPase-activa 96.2 0.00083 1.8E-08 65.0 -1.1 40 478-517 87-131 (388)
275 COG1136 SalX ABC-type antimicr 96.2 0.047 1E-06 53.1 10.7 125 206-333 30-210 (226)
276 cd03228 ABCC_MRP_Like The MRP 96.2 0.034 7.3E-07 52.7 9.8 119 206-331 27-160 (171)
277 PRK00771 signal recognition pa 96.2 0.082 1.8E-06 57.5 13.7 87 206-295 94-184 (437)
278 PRK12727 flagellar biosynthesi 96.2 0.027 5.9E-07 61.6 9.9 89 206-296 349-438 (559)
279 TIGR01650 PD_CobS cobaltochela 96.1 0.19 4.1E-06 52.0 15.4 63 180-255 45-107 (327)
280 KOG2739 Leucine-rich acidic nu 96.1 0.0021 4.6E-08 62.4 1.0 61 481-542 41-103 (260)
281 PRK05703 flhF flagellar biosyn 96.1 0.052 1.1E-06 59.2 11.8 87 207-295 221-308 (424)
282 cd03238 ABC_UvrA The excision 96.1 0.042 9.2E-07 51.9 9.7 115 206-330 20-153 (176)
283 PF13671 AAA_33: AAA domain; P 96.1 0.019 4.1E-07 52.6 7.3 21 209-229 1-21 (143)
284 PLN03187 meiotic recombination 96.0 0.035 7.6E-07 58.3 9.8 59 206-265 125-187 (344)
285 cd03216 ABC_Carb_Monos_I This 96.0 0.027 6E-07 52.8 8.3 118 207-331 26-147 (163)
286 cd03223 ABCD_peroxisomal_ALDP 96.0 0.066 1.4E-06 50.4 10.8 117 206-329 26-151 (166)
287 PRK12723 flagellar biosynthesi 96.0 0.052 1.1E-06 58.0 11.2 91 206-298 173-266 (388)
288 TIGR01817 nifA Nif-specific re 96.0 0.045 9.8E-07 62.4 11.5 135 179-325 195-340 (534)
289 cd03222 ABC_RNaseL_inhibitor T 96.0 0.06 1.3E-06 51.0 10.4 106 206-332 24-138 (177)
290 PRK15455 PrkA family serine pr 96.0 0.0053 1.2E-07 67.2 3.6 49 181-229 77-125 (644)
291 PRK14722 flhF flagellar biosyn 96.0 0.027 5.8E-07 59.6 8.7 89 206-296 136-225 (374)
292 PRK04301 radA DNA repair and r 96.0 0.049 1.1E-06 57.4 10.8 57 206-263 101-161 (317)
293 TIGR00959 ffh signal recogniti 96.0 0.064 1.4E-06 58.2 11.7 89 206-295 98-191 (428)
294 TIGR02239 recomb_RAD51 DNA rep 96.0 0.046 9.9E-07 57.1 10.3 58 206-264 95-156 (316)
295 PF13604 AAA_30: AAA domain; P 96.0 0.066 1.4E-06 51.8 10.8 109 207-327 18-132 (196)
296 PRK13695 putative NTPase; Prov 96.0 0.014 3.1E-07 55.4 6.1 22 209-230 2-23 (174)
297 cd03230 ABC_DR_subfamily_A Thi 96.0 0.054 1.2E-06 51.4 10.0 120 206-331 25-160 (173)
298 PRK11608 pspF phage shock prot 96.0 0.023 5E-07 59.9 8.1 135 180-326 6-151 (326)
299 KOG2035 Replication factor C, 95.9 0.044 9.6E-07 53.7 9.1 205 182-409 15-258 (351)
300 KOG3665 ZYG-1-like serine/thre 95.9 0.0046 1E-07 71.3 2.9 103 438-541 141-261 (699)
301 PRK06067 flagellar accessory p 95.9 0.063 1.4E-06 53.9 10.8 86 206-296 24-130 (234)
302 KOG2739 Leucine-rich acidic nu 95.9 0.003 6.4E-08 61.4 1.1 114 498-618 35-150 (260)
303 COG1124 DppF ABC-type dipeptid 95.9 0.093 2E-06 50.9 11.1 129 206-334 32-210 (252)
304 cd03115 SRP The signal recogni 95.9 0.042 9.1E-07 52.2 9.0 85 209-295 2-91 (173)
305 cd01131 PilT Pilus retraction 95.9 0.017 3.7E-07 56.1 6.3 111 208-330 2-113 (198)
306 COG0468 RecA RecA/RadA recombi 95.9 0.052 1.1E-06 54.9 9.8 88 205-295 58-150 (279)
307 PRK07667 uridine kinase; Provi 95.9 0.02 4.3E-07 55.4 6.6 37 189-229 3-39 (193)
308 PRK15429 formate hydrogenlyase 95.9 0.036 7.7E-07 65.2 10.0 135 180-326 376-521 (686)
309 COG0572 Udk Uridine kinase [Nu 95.8 0.021 4.5E-07 54.8 6.5 78 205-287 6-85 (218)
310 COG2842 Uncharacterized ATPase 95.8 0.11 2.5E-06 51.9 11.7 122 179-313 71-192 (297)
311 PRK00889 adenylylsulfate kinas 95.8 0.071 1.5E-06 50.7 10.3 25 206-230 3-27 (175)
312 PF00485 PRK: Phosphoribulokin 95.8 0.049 1.1E-06 52.8 9.3 79 209-290 1-87 (194)
313 PRK14974 cell division protein 95.8 0.082 1.8E-06 55.4 11.3 89 206-297 139-233 (336)
314 PRK05022 anaerobic nitric oxid 95.8 0.054 1.2E-06 61.1 10.8 136 179-326 186-332 (509)
315 KOG1051 Chaperone HSP104 and r 95.8 0.06 1.3E-06 62.7 11.0 122 181-313 563-687 (898)
316 TIGR00064 ftsY signal recognit 95.8 0.074 1.6E-06 54.3 10.7 88 206-296 71-164 (272)
317 PHA02244 ATPase-like protein 95.8 0.048 1E-06 57.0 9.2 21 209-229 121-141 (383)
318 PLN03186 DNA repair protein RA 95.8 0.064 1.4E-06 56.4 10.3 58 206-264 122-183 (342)
319 PRK10867 signal recognition pa 95.7 0.059 1.3E-06 58.4 10.2 87 206-295 99-192 (433)
320 cd03246 ABCC_Protease_Secretio 95.7 0.059 1.3E-06 51.1 9.2 121 207-330 28-160 (173)
321 PRK08233 hypothetical protein; 95.7 0.03 6.4E-07 53.7 7.2 24 207-230 3-26 (182)
322 COG0396 sufC Cysteine desulfur 95.7 0.11 2.5E-06 49.7 10.6 64 273-336 149-214 (251)
323 PRK12724 flagellar biosynthesi 95.7 0.032 7E-07 59.4 7.9 85 206-295 222-308 (432)
324 TIGR02236 recomb_radA DNA repa 95.7 0.068 1.5E-06 56.2 10.4 58 206-264 94-155 (310)
325 PF01583 APS_kinase: Adenylyls 95.6 0.019 4.2E-07 52.4 5.1 36 207-244 2-37 (156)
326 PRK12726 flagellar biosynthesi 95.6 0.075 1.6E-06 55.8 9.9 90 206-297 205-296 (407)
327 TIGR02974 phageshock_pspF psp 95.6 0.039 8.5E-07 58.1 8.1 45 182-230 1-45 (329)
328 PTZ00494 tuzin-like protein; P 95.6 0.59 1.3E-05 49.5 16.0 167 178-356 369-544 (664)
329 cd01125 repA Hexameric Replica 95.6 0.14 2.9E-06 51.6 11.6 142 209-350 3-198 (239)
330 COG1419 FlhF Flagellar GTP-bin 95.5 0.047 1E-06 57.3 8.3 104 206-312 202-309 (407)
331 COG1126 GlnQ ABC-type polar am 95.5 0.15 3.2E-06 48.5 10.7 125 206-333 27-203 (240)
332 KOG1532 GTPase XAB1, interacts 95.5 0.077 1.7E-06 51.9 8.9 60 204-265 16-86 (366)
333 PRK08533 flagellar accessory p 95.5 0.1 2.2E-06 51.9 10.4 49 206-258 23-71 (230)
334 cd02025 PanK Pantothenate kina 95.5 0.057 1.2E-06 53.3 8.4 73 209-284 1-76 (220)
335 cd01122 GP4d_helicase GP4d_hel 95.5 0.13 2.7E-06 53.1 11.4 53 206-261 29-81 (271)
336 KOG0730 AAA+-type ATPase [Post 95.5 0.24 5.1E-06 54.9 13.6 50 181-230 435-491 (693)
337 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.13 2.7E-06 51.7 11.0 48 206-257 20-67 (237)
338 PF03215 Rad17: Rad17 cell cyc 95.5 0.13 2.8E-06 57.4 11.9 59 181-244 20-78 (519)
339 COG1102 Cmk Cytidylate kinase 95.5 0.035 7.6E-07 49.9 5.9 44 209-265 2-45 (179)
340 KOG0733 Nuclear AAA ATPase (VC 95.5 0.14 3E-06 56.0 11.4 156 206-383 544-718 (802)
341 TIGR00554 panK_bact pantothena 95.4 0.078 1.7E-06 54.3 9.1 81 205-287 60-142 (290)
342 PF13238 AAA_18: AAA domain; P 95.3 0.013 2.7E-07 52.5 3.0 21 210-230 1-21 (129)
343 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.068 1.5E-06 49.8 8.0 117 208-332 26-146 (157)
344 TIGR00708 cobA cob(I)alamin ad 95.3 0.17 3.8E-06 47.0 10.4 120 206-327 4-141 (173)
345 KOG2123 Uncharacterized conser 95.3 0.0008 1.7E-08 65.3 -5.1 82 481-568 17-100 (388)
346 PRK09270 nucleoside triphospha 95.3 0.098 2.1E-06 52.2 9.5 25 205-229 31-55 (229)
347 cd01121 Sms Sms (bacterial rad 95.3 0.11 2.4E-06 55.5 10.3 82 206-295 81-167 (372)
348 PF07726 AAA_3: ATPase family 95.3 0.016 3.4E-07 50.5 3.1 41 210-255 2-42 (131)
349 cd03282 ABC_MSH4_euk MutS4 hom 95.3 0.05 1.1E-06 52.9 7.0 121 207-334 29-159 (204)
350 PRK10733 hflB ATP-dependent me 95.3 0.15 3.2E-06 59.2 12.0 177 181-382 153-356 (644)
351 COG1618 Predicted nucleotide k 95.2 0.018 3.8E-07 51.7 3.4 24 207-230 5-28 (179)
352 cd03229 ABC_Class3 This class 95.2 0.066 1.4E-06 51.1 7.6 123 206-331 25-166 (178)
353 KOG0734 AAA+-type ATPase conta 95.1 0.068 1.5E-06 57.2 7.8 52 181-232 305-362 (752)
354 PTZ00035 Rad51 protein; Provis 95.1 0.18 3.9E-06 53.2 11.1 58 206-264 117-178 (337)
355 PRK05439 pantothenate kinase; 95.1 0.12 2.7E-06 53.2 9.6 79 205-287 84-166 (311)
356 COG1066 Sms Predicted ATP-depe 95.1 0.11 2.4E-06 54.3 9.1 94 189-295 79-177 (456)
357 KOG0731 AAA+-type ATPase conta 95.1 0.098 2.1E-06 59.6 9.5 181 180-385 311-520 (774)
358 PF00154 RecA: recA bacterial 95.1 0.089 1.9E-06 54.4 8.5 83 206-295 52-140 (322)
359 COG0464 SpoVK ATPases of the A 95.1 0.27 5.8E-06 55.6 13.3 133 205-357 274-424 (494)
360 KOG0743 AAA+-type ATPase [Post 95.1 0.37 8E-06 51.2 13.0 155 207-396 235-416 (457)
361 cd02027 APSK Adenosine 5'-phos 95.1 0.2 4.3E-06 46.1 10.1 21 209-229 1-21 (149)
362 cd03215 ABC_Carb_Monos_II This 95.1 0.25 5.5E-06 47.2 11.2 25 206-230 25-49 (182)
363 PRK07132 DNA polymerase III su 95.1 1.2 2.5E-05 46.1 16.5 134 206-355 17-161 (299)
364 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.052 1.1E-06 53.3 6.5 121 207-332 29-160 (213)
365 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.17 3.6E-06 48.6 10.0 21 209-229 1-21 (183)
366 COG4618 ArpD ABC-type protease 95.0 0.093 2E-06 56.2 8.6 23 207-229 362-384 (580)
367 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.18 3.9E-06 50.0 10.0 125 207-331 30-204 (254)
368 PRK05480 uridine/cytidine kina 95.0 0.021 4.4E-07 56.3 3.6 24 206-229 5-28 (209)
369 PF12775 AAA_7: P-loop contain 95.0 0.022 4.8E-07 58.1 3.7 96 190-304 23-118 (272)
370 cd02019 NK Nucleoside/nucleoti 94.9 0.019 4.1E-07 44.7 2.5 22 209-230 1-22 (69)
371 TIGR00390 hslU ATP-dependent p 94.9 0.066 1.4E-06 56.9 7.1 80 180-261 12-103 (441)
372 PRK13539 cytochrome c biogenes 94.9 0.12 2.6E-06 50.7 8.7 62 279-343 138-201 (207)
373 cd03232 ABC_PDR_domain2 The pl 94.9 0.17 3.7E-06 48.9 9.7 24 206-229 32-55 (192)
374 TIGR00235 udk uridine kinase. 94.9 0.023 5.1E-07 55.7 3.7 25 205-229 4-28 (207)
375 cd03269 ABC_putative_ATPase Th 94.9 0.23 4.9E-06 48.9 10.7 25 206-230 25-49 (210)
376 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.9 0.28 6E-06 48.8 11.3 25 206-230 47-71 (224)
377 cd03217 ABC_FeS_Assembly ABC-t 94.9 0.19 4.1E-06 48.9 9.9 123 206-331 25-169 (200)
378 cd01135 V_A-ATPase_B V/A-type 94.9 0.16 3.4E-06 51.1 9.3 90 206-295 68-175 (276)
379 PF10236 DAP3: Mitochondrial r 94.9 0.17 3.7E-06 52.8 10.1 49 337-386 258-306 (309)
380 cd03235 ABC_Metallic_Cations A 94.9 0.24 5.1E-06 48.9 10.7 25 206-230 24-48 (213)
381 cd03369 ABCC_NFT1 Domain 2 of 94.9 0.38 8.3E-06 47.1 12.2 54 278-331 135-189 (207)
382 PTZ00301 uridine kinase; Provi 94.8 0.039 8.4E-07 53.8 4.9 23 207-229 3-25 (210)
383 COG4133 CcmA ABC-type transpor 94.8 0.26 5.7E-06 45.8 9.8 56 272-327 134-191 (209)
384 PRK05973 replicative DNA helic 94.8 0.18 3.8E-06 50.0 9.4 49 206-258 63-111 (237)
385 COG1120 FepC ABC-type cobalami 94.8 0.33 7.1E-06 48.4 11.3 129 206-334 27-207 (258)
386 PRK14721 flhF flagellar biosyn 94.8 0.17 3.6E-06 54.7 9.9 88 206-295 190-278 (420)
387 PRK05800 cobU adenosylcobinami 94.8 0.037 7.9E-07 52.0 4.4 21 209-229 3-23 (170)
388 TIGR03575 selen_PSTK_euk L-ser 94.8 0.45 9.8E-06 49.9 12.8 37 210-247 2-38 (340)
389 KOG0733 Nuclear AAA ATPase (VC 94.8 0.49 1.1E-05 51.9 13.2 178 180-382 190-395 (802)
390 TIGR03771 anch_rpt_ABC anchore 94.8 0.37 8E-06 47.9 11.9 24 207-230 6-29 (223)
391 TIGR01425 SRP54_euk signal rec 94.8 0.19 4E-06 54.3 10.2 38 206-245 99-136 (429)
392 TIGR02858 spore_III_AA stage I 94.8 0.18 3.8E-06 51.3 9.6 128 189-330 98-233 (270)
393 PRK06547 hypothetical protein; 94.8 0.027 5.9E-07 53.0 3.5 26 205-230 13-38 (172)
394 PRK14723 flhF flagellar biosyn 94.7 0.25 5.3E-06 57.2 11.7 87 207-295 185-272 (767)
395 PF08298 AAA_PrkA: PrkA AAA do 94.7 0.04 8.6E-07 56.9 4.8 50 180-229 61-110 (358)
396 cd03263 ABC_subfamily_A The AB 94.7 0.28 6E-06 48.7 10.9 25 206-230 27-51 (220)
397 cd03237 ABC_RNaseL_inhibitor_d 94.7 0.28 6E-06 49.5 10.9 127 206-332 24-182 (246)
398 PRK13543 cytochrome c biogenes 94.7 0.36 7.8E-06 47.6 11.5 25 206-230 36-60 (214)
399 PLN00020 ribulose bisphosphate 94.7 0.075 1.6E-06 55.2 6.6 26 205-230 146-171 (413)
400 PRK09544 znuC high-affinity zi 94.7 0.25 5.5E-06 50.0 10.5 127 206-332 29-187 (251)
401 COG4181 Predicted ABC-type tra 94.7 0.6 1.3E-05 42.6 11.3 127 207-334 36-215 (228)
402 PF08433 KTI12: Chromatin asso 94.7 0.063 1.4E-06 54.6 6.1 23 208-230 2-24 (270)
403 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.3 6.5E-06 48.8 11.0 40 206-247 19-58 (229)
404 PRK09280 F0F1 ATP synthase sub 94.6 0.18 3.9E-06 54.8 9.7 89 206-295 143-247 (463)
405 PRK03846 adenylylsulfate kinas 94.6 0.1 2.2E-06 50.8 7.3 24 206-229 23-46 (198)
406 PRK13538 cytochrome c biogenes 94.6 0.28 6.1E-06 47.9 10.5 25 206-230 26-50 (204)
407 PTZ00088 adenylate kinase 1; P 94.6 0.039 8.4E-07 54.6 4.3 21 209-229 8-28 (229)
408 PTZ00185 ATPase alpha subunit; 94.6 0.23 5E-06 54.1 10.2 90 206-295 188-298 (574)
409 PF00006 ATP-synt_ab: ATP synt 94.6 0.11 2.5E-06 50.6 7.4 84 208-295 16-114 (215)
410 PF03308 ArgK: ArgK protein; 94.5 0.077 1.7E-06 52.2 6.0 60 188-251 14-73 (266)
411 TIGR00150 HI0065_YjeE ATPase, 94.5 0.053 1.1E-06 48.1 4.5 40 187-230 6-45 (133)
412 cd03244 ABCC_MRP_domain2 Domai 94.5 0.36 7.9E-06 47.9 11.2 24 207-230 30-53 (221)
413 PRK05201 hslU ATP-dependent pr 94.5 0.077 1.7E-06 56.5 6.4 51 180-230 15-73 (443)
414 PRK05986 cob(I)alamin adenolsy 94.5 0.25 5.4E-06 46.7 9.2 120 206-327 21-159 (191)
415 PRK06995 flhF flagellar biosyn 94.5 0.17 3.7E-06 55.5 9.3 87 207-295 256-343 (484)
416 cd03213 ABCG_EPDR ABCG transpo 94.5 0.35 7.6E-06 46.8 10.7 119 206-327 34-172 (194)
417 PRK04328 hypothetical protein; 94.5 0.23 5.1E-06 50.1 9.8 41 206-248 22-62 (249)
418 PRK06002 fliI flagellum-specif 94.5 0.18 3.9E-06 54.6 9.2 87 206-295 164-263 (450)
419 cd02028 UMPK_like Uridine mono 94.5 0.069 1.5E-06 50.8 5.6 21 209-229 1-21 (179)
420 PRK09580 sufC cysteine desulfu 94.5 0.41 8.8E-06 48.5 11.7 25 206-230 26-50 (248)
421 PRK06762 hypothetical protein; 94.5 0.031 6.8E-07 52.6 3.2 23 207-229 2-24 (166)
422 TIGR01069 mutS2 MutS2 family p 94.4 0.041 8.8E-07 64.7 4.7 25 206-230 321-345 (771)
423 PRK08972 fliI flagellum-specif 94.4 0.23 5E-06 53.5 9.9 86 206-295 161-261 (444)
424 COG0714 MoxR-like ATPases [Gen 94.4 0.089 1.9E-06 55.8 6.9 65 181-258 25-89 (329)
425 cd03266 ABC_NatA_sodium_export 94.4 0.33 7.2E-06 48.0 10.6 24 207-230 31-54 (218)
426 COG2274 SunT ABC-type bacterio 94.4 0.3 6.5E-06 56.7 11.5 24 206-229 498-521 (709)
427 PRK06731 flhF flagellar biosyn 94.4 0.38 8.3E-06 48.8 10.9 89 207-297 75-165 (270)
428 COG1428 Deoxynucleoside kinase 94.4 0.027 5.9E-07 53.3 2.5 24 207-230 4-27 (216)
429 TIGR03498 FliI_clade3 flagella 94.4 0.19 4.1E-06 54.2 9.2 86 206-295 139-239 (418)
430 cd03253 ABCC_ATM1_transporter 94.4 0.34 7.3E-06 48.7 10.7 55 277-331 146-201 (236)
431 TIGR03740 galliderm_ABC gallid 94.3 0.23 4.9E-06 49.4 9.2 25 206-230 25-49 (223)
432 COG4088 Predicted nucleotide k 94.3 0.17 3.7E-06 47.5 7.4 23 208-230 2-24 (261)
433 KOG1947 Leucine rich repeat pr 94.3 0.0062 1.3E-07 68.9 -2.3 43 767-809 400-444 (482)
434 cd03268 ABC_BcrA_bacitracin_re 94.3 0.25 5.4E-06 48.5 9.4 25 206-230 25-49 (208)
435 COG1703 ArgK Putative periplas 94.3 0.063 1.4E-06 53.6 4.9 62 190-255 38-99 (323)
436 COG0563 Adk Adenylate kinase a 94.3 0.091 2E-06 49.7 5.9 22 209-230 2-23 (178)
437 COG4240 Predicted kinase [Gene 94.3 0.21 4.6E-06 47.5 8.1 82 205-288 48-135 (300)
438 PF13481 AAA_25: AAA domain; P 94.3 0.23 4.9E-06 48.1 9.0 42 208-249 33-82 (193)
439 PRK13545 tagH teichoic acids e 94.3 0.53 1.1E-05 52.1 12.4 124 206-332 49-209 (549)
440 cd03226 ABC_cobalt_CbiO_domain 94.3 0.26 5.7E-06 48.2 9.5 24 207-230 26-49 (205)
441 PF00910 RNA_helicase: RNA hel 94.3 0.028 6.1E-07 48.3 2.2 21 210-230 1-21 (107)
442 cd03231 ABC_CcmA_heme_exporter 94.3 0.41 8.8E-06 46.7 10.7 25 206-230 25-49 (201)
443 cd03245 ABCC_bacteriocin_expor 94.3 0.41 9E-06 47.4 11.0 25 206-230 29-53 (220)
444 PRK10416 signal recognition pa 94.2 0.38 8.2E-06 50.3 10.9 88 206-296 113-206 (318)
445 PRK10820 DNA-binding transcrip 94.2 0.12 2.5E-06 58.5 7.7 46 180-229 204-249 (520)
446 PRK06217 hypothetical protein; 94.2 0.072 1.6E-06 51.0 5.2 22 209-230 3-24 (183)
447 cd03264 ABC_drug_resistance_li 94.2 0.24 5.1E-06 48.8 9.0 22 209-230 27-48 (211)
448 COG0003 ArsA Predicted ATPase 94.2 0.082 1.8E-06 54.8 5.8 48 207-256 2-49 (322)
449 PRK12597 F0F1 ATP synthase sub 94.2 0.24 5.3E-06 54.0 9.6 89 206-295 142-246 (461)
450 PRK03839 putative kinase; Prov 94.2 0.035 7.7E-07 53.1 3.0 21 209-229 2-22 (180)
451 cd03283 ABC_MutS-like MutS-lik 94.2 0.35 7.7E-06 46.9 9.9 22 208-229 26-47 (199)
452 PRK10463 hydrogenase nickel in 94.2 0.61 1.3E-05 47.5 11.7 86 205-296 102-194 (290)
453 TIGR03600 phage_DnaB phage rep 94.1 4.6 9.9E-05 44.6 19.8 54 206-262 193-246 (421)
454 PF13504 LRR_7: Leucine rich r 94.1 0.031 6.6E-07 29.8 1.3 16 484-499 2-17 (17)
455 TIGR03574 selen_PSTK L-seryl-t 94.1 0.18 3.9E-06 51.1 8.1 21 210-230 2-22 (249)
456 KOG3347 Predicted nucleotide k 94.1 0.081 1.8E-06 46.8 4.6 72 207-288 7-78 (176)
457 PF06745 KaiC: KaiC; InterPro 94.1 0.12 2.7E-06 51.5 6.8 48 206-257 18-66 (226)
458 PRK00625 shikimate kinase; Pro 94.1 0.037 8E-07 52.2 2.8 21 209-229 2-22 (173)
459 PRK11823 DNA repair protein Ra 94.1 0.35 7.6E-06 53.3 10.8 82 206-295 79-165 (446)
460 TIGR03305 alt_F1F0_F1_bet alte 94.1 0.23 4.9E-06 53.9 9.0 89 206-295 137-241 (449)
461 cd03233 ABC_PDR_domain1 The pl 94.1 0.53 1.1E-05 45.9 11.0 25 206-230 32-56 (202)
462 TIGR01360 aden_kin_iso1 adenyl 94.1 0.043 9.4E-07 52.9 3.3 24 206-229 2-25 (188)
463 PRK04040 adenylate kinase; Pro 94.0 0.044 9.6E-07 52.5 3.3 22 208-229 3-24 (188)
464 cd03236 ABC_RNaseL_inhibitor_d 94.0 0.54 1.2E-05 47.7 11.3 25 206-230 25-49 (255)
465 KOG0728 26S proteasome regulat 94.0 1.3 2.8E-05 42.9 12.8 155 181-356 147-331 (404)
466 PF03205 MobB: Molybdopterin g 94.0 0.077 1.7E-06 48.0 4.6 39 208-247 1-39 (140)
467 PRK15177 Vi polysaccharide exp 94.0 0.5 1.1E-05 46.5 10.8 25 206-230 12-36 (213)
468 PRK09519 recA DNA recombinatio 94.0 0.21 4.5E-06 57.9 8.9 84 206-296 59-148 (790)
469 TIGR03522 GldA_ABC_ATP gliding 93.9 0.64 1.4E-05 48.6 12.0 25 206-230 27-51 (301)
470 TIGR00416 sms DNA repair prote 93.9 0.47 1E-05 52.3 11.4 53 189-247 80-132 (454)
471 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.29 6.3E-06 49.8 9.1 40 206-247 35-74 (259)
472 PRK13647 cbiO cobalt transport 93.9 0.68 1.5E-05 47.6 12.0 25 206-230 30-54 (274)
473 TIGR02655 circ_KaiC circadian 93.9 0.44 9.5E-06 53.4 11.2 66 189-263 249-314 (484)
474 COG1131 CcmA ABC-type multidru 93.9 0.45 9.7E-06 49.3 10.5 25 206-230 30-54 (293)
475 cd03254 ABCC_Glucan_exporter_l 93.9 0.57 1.2E-05 46.8 11.1 24 207-230 29-52 (229)
476 cd03298 ABC_ThiQ_thiamine_tran 93.8 0.35 7.7E-06 47.5 9.5 25 206-230 23-47 (211)
477 PRK13765 ATP-dependent proteas 93.8 0.1 2.2E-06 59.6 6.1 75 180-264 31-105 (637)
478 COG2019 AdkA Archaeal adenylat 93.8 0.053 1.1E-06 49.0 3.0 23 207-229 4-26 (189)
479 PRK11388 DNA-binding transcrip 93.8 0.18 4E-06 58.9 8.5 131 180-325 325-466 (638)
480 PRK08927 fliI flagellum-specif 93.8 0.37 8E-06 52.2 9.9 86 206-295 157-257 (442)
481 COG3640 CooC CO dehydrogenase 93.8 0.11 2.3E-06 50.1 5.2 50 209-266 2-51 (255)
482 PRK15453 phosphoribulokinase; 93.8 0.28 6.1E-06 49.4 8.4 78 206-285 4-89 (290)
483 COG2401 ABC-type ATPase fused 93.8 0.089 1.9E-06 54.7 5.0 127 206-336 408-578 (593)
484 KOG0739 AAA+-type ATPase [Post 93.8 8.3 0.00018 38.8 18.2 96 181-297 134-236 (439)
485 TIGR02868 CydC thiol reductant 93.8 0.36 7.8E-06 55.2 10.6 25 206-230 360-384 (529)
486 cd02024 NRK1 Nicotinamide ribo 93.8 0.041 8.9E-07 52.4 2.4 21 209-229 1-21 (187)
487 TIGR02322 phosphon_PhnN phosph 93.7 0.05 1.1E-06 52.0 3.0 23 208-230 2-24 (179)
488 TIGR01188 drrA daunorubicin re 93.7 0.61 1.3E-05 48.8 11.4 25 206-230 18-42 (302)
489 TIGR02329 propionate_PrpR prop 93.7 0.15 3.2E-06 57.2 7.1 47 180-230 212-258 (526)
490 PRK14269 phosphate ABC transpo 93.7 0.81 1.8E-05 46.3 12.0 24 207-230 28-51 (246)
491 COG0467 RAD55 RecA-superfamily 93.7 0.092 2E-06 53.6 5.1 42 205-248 21-62 (260)
492 PF02374 ArsA_ATPase: Anion-tr 93.7 0.1 2.2E-06 54.2 5.5 46 208-255 2-47 (305)
493 cd02023 UMPK Uridine monophosp 93.7 0.042 9.2E-07 53.5 2.5 21 209-229 1-21 (198)
494 PRK00409 recombination and DNA 93.7 0.05 1.1E-06 64.1 3.4 179 206-396 326-513 (782)
495 PRK06936 type III secretion sy 93.6 0.38 8.3E-06 52.0 9.7 86 206-295 161-261 (439)
496 PRK00131 aroK shikimate kinase 93.6 0.052 1.1E-06 51.6 3.0 24 206-229 3-26 (175)
497 PRK07594 type III secretion sy 93.6 0.28 6.1E-06 53.0 8.8 86 206-295 154-254 (433)
498 cd01136 ATPase_flagellum-secre 93.6 0.46 1E-05 49.5 10.0 86 206-295 68-168 (326)
499 COG0529 CysC Adenylylsulfate k 93.6 0.18 3.8E-06 46.3 6.0 24 206-229 22-45 (197)
500 KOG2170 ATPase of the AAA+ sup 93.6 0.24 5.2E-06 49.5 7.4 111 182-311 84-203 (344)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-63 Score=569.39 Aligned_cols=631 Identities=24% Similarity=0.354 Sum_probs=435.0
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 003300 13 LISVAADEVKQQVRLVTGVRQEVKKLTSNLQAIRAVLEDAEKRQMQHDKAVTFWLDQLKDASYDMEDVLEEWTTARLKLQ 92 (832)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~lr~~~~d~ed~ld~~~~~~~~~~ 92 (832)
.++++.+.+.+++..+.+.++.+..|++.|..++++++||+.++.+ ...+..|...+++++|++||.++.|..+....+
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~ 86 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERK 86 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888889999999999999999999999999999887 888999999999999999999999998887654
Q ss_pred hccCCCchhhhcccccccccccccccccccCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhcCcccccc--CC-CCCCC
Q 003300 93 IEGVDDDTALALAPHKKKVRSFFCALSNCFGSFKQLSLRHDIAVKIREINGTLDDIASQKDTFKFVENVS--NN-VKKPE 169 (832)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~--~~-~~~~~ 169 (832)
..+.-.. +....+.. |+ . ..+++.+..+..+..++-.+....+.+....... .. .....
T Consensus 87 ~~~~l~~--------~~~~~~~~-----c~-~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~ 148 (889)
T KOG4658|consen 87 ANDLLST--------RSVERQRL-----CL-C----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPRE 148 (889)
T ss_pred HhHHhhh--------hHHHHHHH-----hh-h----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchh
Confidence 4332100 00011111 11 0 2344455555555555555555444444322111 11 11112
Q ss_pred cccccccccCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChh-hhccCCeeEEEEeCCC
Q 003300 170 RVRTTSLIDEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIWVCVSDT 248 (832)
Q Consensus 170 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~ 248 (832)
.....+...... ||.+..+++++..|..++ ..+++|+||||+||||||+.++++.. ++.+||.++||.||++
T Consensus 149 ~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~ 221 (889)
T KOG4658|consen 149 KVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE 221 (889)
T ss_pred hcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccc
Confidence 233334444445 999999999999998763 38999999999999999999999977 9999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCC--CcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH
Q 003300 249 FEGIRVAKAIIEGLGVSASGL--SEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR 326 (832)
Q Consensus 249 ~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 326 (832)
++...++.+|+..++...... ...+++...|.+.|++|||+||+||+|+. .+|+.+..++|...+|+||++|||+.
T Consensus 222 f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~ 299 (889)
T KOG4658|consen 222 FTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSE 299 (889)
T ss_pred ccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccH
Confidence 999999999999998754332 23478899999999999999999999997 56999999999998999999999999
Q ss_pred HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHH
Q 003300 327 SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSKSTVKEWQRI 405 (832)
Q Consensus 327 ~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~ 405 (832)
.|+.. +++...+++++|+.+|||.||++.+|.... ..++.++++|++++++|+|+|||++++|+.|+.+.+..+|+++
T Consensus 300 ~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~ 378 (889)
T KOG4658|consen 300 EVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRA 378 (889)
T ss_pred hhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99998 788889999999999999999999987644 3445589999999999999999999999999999999999999
Q ss_pred Hhhhccccc----ccCCceE-EE------------eee----ecCCCcccch--------hHH-----------------
Q 003300 406 LESEMWKVE----EIGQVIR-QL------------RLF----FRPNTYKIRE--------TRK----------------- 439 (832)
Q Consensus 406 ~~~~~~~~~----~~~~~~~-~l------------~cf----~fp~~~~i~~--------a~~----------------- 439 (832)
.+...+.+. ...+.|+ .| .|| +|||||+|++ |++
T Consensus 379 ~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~ 458 (889)
T KOG4658|consen 379 LNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYD 458 (889)
T ss_pred HccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHH
Confidence 987655422 2233443 22 788 9999999988 222
Q ss_pred HHhh---------------------------------------cc--------------------cccEEEecCcccccc
Q 003300 440 LFSK---------------------------------------LA--------------------CLRALVIRQSLVIRL 460 (832)
Q Consensus 440 ~f~~---------------------------------------~~--------------------~Lr~L~~~~~~~~~~ 460 (832)
|+.. .. ..|...+.++.+...
T Consensus 459 ~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~ 538 (889)
T KOG4658|consen 459 YIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI 538 (889)
T ss_pred HHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc
Confidence 1110 00 001111111110000
Q ss_pred ------C-CCcEEecCCC--ccccccc-cCCCCceeEEEeCCcC-cccccccccCCCcccEEeccCccCccccCcccccc
Q 003300 461 ------S-SSPFRLHSNL--IREIPKN-VGKLIHLRYLNLSELG-IERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKL 529 (832)
Q Consensus 461 ------~-~r~L~L~~n~--l~~lp~~-l~~l~~L~~L~Ls~~~-i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l 529 (832)
+ +++|-+..|. +..++.. |..++.|++|||++|. +.++|..+++|.+|++|+++++. +..+|.++++|
T Consensus 539 ~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~L 617 (889)
T KOG4658|consen 539 AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNL 617 (889)
T ss_pred cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHH
Confidence 0 2445555553 4444433 5568888888888764 66888888888888888888844 77888888888
Q ss_pred cCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCC--CCC---------
Q 003300 530 KNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGN--VSH--------- 598 (832)
Q Consensus 530 ~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~--~~~--------- 598 (832)
.+|.+|++..+.....+|..+..|++|+.|.++..... .....+.++..|++|+.+.+..... ...
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~---~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS---NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRS 694 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccc---cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHH
Confidence 88888888877666666555666888888875544411 1344455666666666655543221 000
Q ss_pred ----------hhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcC--C-CCCCccEEEEEeeCCCCCC
Q 003300 599 ----------LDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTL--Q-PPLSVEKLGIILYGGNIFP 665 (832)
Q Consensus 599 ----------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~-~~~~L~~L~l~~~~~~~~p 665 (832)
........+..+.+|+.|.+..+........ ..... . .++++..+.+.++.....+
T Consensus 695 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~-----------~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 695 LLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIE-----------WEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred HhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcc-----------cccccchhhhHHHHHHHHhhcccccccc
Confidence 0011112334455666666665554321110 00000 0 1234444445555555555
Q ss_pred chhccccCCcEEEEeccCCCCc
Q 003300 666 KWLTSLTNLRNLYLRSCVKCEH 687 (832)
Q Consensus 666 ~~l~~l~~L~~L~L~~~~~~~~ 687 (832)
.|....++|+.|.+..|...++
T Consensus 764 ~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 764 TWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred chhhccCcccEEEEeccccccc
Confidence 6666667777777777765554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.1e-53 Score=511.54 Aligned_cols=611 Identities=20% Similarity=0.261 Sum_probs=417.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCcccccc-------CCCCCCCcccccccccCCceecchhhHHHHHHHHhccCCCCCCCe
Q 003300 135 AVKIREINGTLDDIASQKDTFKFVENVS-------NNVKKPERVRTTSLIDEGEVCGRVDEKNELLSKLLCESGEQQQGL 207 (832)
Q Consensus 135 ~~~i~~~~~~l~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~ 207 (832)
..++++|++++.+++.. .++.+..... ............+..+..++|||+++++++..+|.... +++
T Consensus 133 ~~~~~~w~~al~~~~~~-~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVANI-LGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEV 207 (1153)
T ss_pred hhHHHHHHHHHHHHhCc-CceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----Cce
Confidence 35789999999999876 3333322110 00111111222333455689999999999999886543 378
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe---CCC-----------cc-HHHHHHHHHHHhCCCCC-CCCc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV---SDT-----------FE-GIRVAKAIIEGLGVSAS-GLSE 271 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~~~~~i~~~l~~~~~-~~~~ 271 (832)
++|+|+||||+||||||+++|+ ++..+|+..+|+.. ... .. ...++.+++.++..... ....
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 9999999999999999999998 67788998888742 111 01 12334444444422211 1111
Q ss_pred HHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHHHhCCcCeeeCCCCChHHHHHH
Q 003300 272 FESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVALQLGSIDIIPVKELGEGECCLL 351 (832)
Q Consensus 272 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~~~~~~~l~~L~~~~~~~l 351 (832)
...+++.++++|+||||||||+. .+|+.+.....+.++|++||||||+..++..++....|+++.|++++||++
T Consensus 286 ----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~L 359 (1153)
T PLN03210 286 ----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEM 359 (1153)
T ss_pred ----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHH
Confidence 24567789999999999999765 678888776666678999999999999998777788999999999999999
Q ss_pred HHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhccc---------------ccc-
Q 003300 352 FKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWK---------------VEE- 415 (832)
Q Consensus 352 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~---------------~~~- 415 (832)
|+++||+... +++.+.+++++|+++|+|+|||++++|++|+++ +.++|+.++++.... ++.
T Consensus 360 F~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~ 436 (1153)
T PLN03210 360 FCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNK 436 (1153)
T ss_pred HHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCccHHHHHHHHHhhhccCcc
Confidence 9999997643 345678899999999999999999999999987 589999987763321 222
Q ss_pred cCCceE-EEeeeecCCCcccch-----------------------------------------h----------------
Q 003300 416 IGQVIR-QLRLFFRPNTYKIRE-----------------------------------------T---------------- 437 (832)
Q Consensus 416 ~~~~~~-~l~cf~fp~~~~i~~-----------------------------------------a---------------- 437 (832)
.++.+| .+.|| +.++.++. |
T Consensus 437 ~~k~~Fl~ia~f--f~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~ 514 (1153)
T PLN03210 437 KDKAIFRHIACL--FNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREF 514 (1153)
T ss_pred chhhhhheehhh--cCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCccee
Confidence 233444 44555 11111110 0
Q ss_pred ------------------------------------HHHHhhcccccEEEecCcc----------ccc------cCCCcE
Q 003300 438 ------------------------------------RKLFSKLACLRALVIRQSL----------VIR------LSSSPF 465 (832)
Q Consensus 438 ------------------------------------~~~f~~~~~Lr~L~~~~~~----------~~~------~~~r~L 465 (832)
.+.|.++++|+.|.+..+. +.. ..+|.|
T Consensus 515 l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L 594 (1153)
T PLN03210 515 LVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLL 594 (1153)
T ss_pred EeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEE
Confidence 1235578888888775432 111 114888
Q ss_pred EecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCccc
Q 003300 466 RLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKY 545 (832)
Q Consensus 466 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 545 (832)
++.++.+..+|..+ .+.+|+.|++++|.+..+|..+..+++|++|+|++|..+..+|. +..+++|++|++++|..+..
T Consensus 595 ~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~ 672 (1153)
T PLN03210 595 RWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVE 672 (1153)
T ss_pred EecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccc
Confidence 89999999998887 57889999999999998988888999999999998887888885 78889999999999888888
Q ss_pred ccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCC
Q 003300 546 MPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVD 625 (832)
Q Consensus 546 ~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 625 (832)
+|..++++++|+.|+ +.++......+..+ ++++|+.+.+.++..+..++. ...+|+.|+++.+.+..
T Consensus 673 lp~si~~L~~L~~L~--L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 673 LPSSIQYLNKLEDLD--MSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEE 739 (1153)
T ss_pred cchhhhccCCCCEEe--CCCCCCcCccCCcC----CCCCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCcccc
Confidence 888888999999888 44433211122211 455666666666544333221 12456666666665443
Q ss_pred CchHHH--hh-----hhhchHHHhh--------cCCCCCCccEEEEEeeC-CCCCCchhccccCCcEEEEeccCCCCcCC
Q 003300 626 GEDEAR--RR-----KKEKDEQLLK--------TLQPPLSVEKLGIILYG-GNIFPKWLTSLTNLRNLYLRSCVKCEHLP 689 (832)
Q Consensus 626 ~~~~~~--~~-----~~~~~~~~~~--------~l~~~~~L~~L~l~~~~-~~~~p~~l~~l~~L~~L~L~~~~~~~~l~ 689 (832)
.+.... .. .......+.. ....+++|+.|.+++|. ...+|.+++++++|+.|+|++|..++.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 322100 00 0000000000 11234688999998885 35578889999999999999998888887
Q ss_pred CCCCcc-ccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCC
Q 003300 690 PLGKLP-LEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMP 768 (832)
Q Consensus 690 ~l~~lp-L~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~ 768 (832)
....++ |+.+++++|..+.... ...++|+.|++++. .++.+ |..+..++
T Consensus 820 ~~~~L~sL~~L~Ls~c~~L~~~p-----------------------~~~~nL~~L~Ls~n-~i~~i------P~si~~l~ 869 (1153)
T PLN03210 820 TGINLESLESLDLSGCSRLRTFP-----------------------DISTNISDLNLSRT-GIEEV------PWWIEKFS 869 (1153)
T ss_pred CCCCccccCEEECCCCCcccccc-----------------------ccccccCEeECCCC-CCccC------hHHHhcCC
Confidence 665666 7777777765542211 12356777766653 33332 23455677
Q ss_pred ccceeeecccccccCCCCCCCCCCCcCeEEEcCChhhHHh
Q 003300 769 RLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPILENR 808 (832)
Q Consensus 769 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~ 808 (832)
+|+.|++++|++++.+|..+..+++|+.|++++|+.|+..
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 8888888888888888777777788888888888777643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6e-34 Score=297.82 Aligned_cols=245 Identities=39% Similarity=0.554 Sum_probs=190.4
Q ss_pred chhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCC
Q 003300 185 RVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGV 264 (832)
Q Consensus 185 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 264 (832)
|+.++++|.+.|.... ++.++|+|+|+||+||||||.+++++...+.+|+.++|++++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7889999999998854 388999999999999999999999976789999999999999999889999999999988
Q ss_pred CCC---CCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHHHhCC-cCeeeC
Q 003300 265 SAS---GLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVALQLGS-IDIIPV 340 (832)
Q Consensus 265 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~~-~~~~~l 340 (832)
... ...+.+.....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4567788999999999999999999999876 5788888888777789999999999988766554 678999
Q ss_pred CCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhccccccc---C
Q 003300 341 KELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVEEI---G 417 (832)
Q Consensus 341 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~---~ 417 (832)
++|+.++|++||.+.++... ....+...+.+++|+++|+|+||||+++|++|+.+.+..+|++++++........ .
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999998665 1234555678899999999999999999999977667889999887654443211 1
Q ss_pred CceE-E-------E-----eee----ecCCCcccch
Q 003300 418 QVIR-Q-------L-----RLF----FRPNTYKIRE 436 (832)
Q Consensus 418 ~~~~-~-------l-----~cf----~fp~~~~i~~ 436 (832)
..++ . | .|| +||+++.|++
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~ 269 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPR 269 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEH
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECH
Confidence 2222 1 1 677 8999998877
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=6.1e-23 Score=251.42 Aligned_cols=228 Identities=23% Similarity=0.290 Sum_probs=160.5
Q ss_pred HHHhhcccccEEEecCccccccC-------CCcEEecCCCcc-ccccccCCCCceeEEEeCCcCcc-cccccccCCCccc
Q 003300 439 KLFSKLACLRALVIRQSLVIRLS-------SSPFRLHSNLIR-EIPKNVGKLIHLRYLNLSELGIE-RLPKTLCELYNLQ 509 (832)
Q Consensus 439 ~~f~~~~~Lr~L~~~~~~~~~~~-------~r~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~~~i~-~lp~~~~~l~~L~ 509 (832)
..|..+++||.|.+.+|.+.... +++|++++|.+. .+|..++++++|++|+|++|.+. .+|..++++++|+
T Consensus 112 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 112 DIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred HHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 45668889999998887753221 488999999886 57888999999999999999876 7888899999999
Q ss_pred EEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCcee
Q 003300 510 KLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECG 589 (832)
Q Consensus 510 ~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~ 589 (832)
+|++++|.....+|..++++++|++|++++|.....+|..++++++|++|+ +.+|.+.+..+..+. .+++|+.+.
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--L~~n~l~~~~p~~l~---~l~~L~~L~ 266 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD--LVYNNLTGPIPSSLG---NLKNLQYLF 266 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE--CcCceeccccChhHh---CCCCCCEEE
Confidence 999999887788888899999999999999877778888889999999998 666665544444444 444555555
Q ss_pred ecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCC-CCCchh
Q 003300 590 IEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGN-IFPKWL 668 (832)
Q Consensus 590 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~l 668 (832)
+....-. ......+.++++|+.|++++|.+....+ ..+..+++|+.|++++|... .+|.++
T Consensus 267 L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--------------~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 267 LYQNKLS----GPIPPSIFSLQKLISLDLSDNSLSGEIP--------------ELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred CcCCeee----ccCchhHhhccCcCEEECcCCeeccCCC--------------hhHcCCCCCcEEECCCCccCCcCChhH
Confidence 5443211 1112245567788888888776543221 12344566677776666543 345666
Q ss_pred ccccCCcEEEEeccCCCCcCC
Q 003300 669 TSLTNLRNLYLRSCVKCEHLP 689 (832)
Q Consensus 669 ~~l~~L~~L~L~~~~~~~~l~ 689 (832)
..+++|+.|++++|.....+|
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCC
Confidence 666677777776665443333
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=6.6e-23 Score=211.64 Aligned_cols=319 Identities=20% Similarity=0.234 Sum_probs=198.1
Q ss_pred HHHHhhcccccEEEecCccccccC--------CCcEEecCCCccccc-cccCCCCceeEEEeCCcCcccccc-cccCCCc
Q 003300 438 RKLFSKLACLRALVIRQSLVIRLS--------SSPFRLHSNLIREIP-KNVGKLIHLRYLNLSELGIERLPK-TLCELYN 507 (832)
Q Consensus 438 ~~~f~~~~~Lr~L~~~~~~~~~~~--------~r~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~ 507 (832)
-..|.++++|+.+.+..|.....+ ...|+|.+|.|.++. +.+.-++.||.||||.|.|+++|. +|..-.+
T Consensus 95 ~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence 355778888888888887643322 367888888888764 457778888888888888887764 4666678
Q ss_pred ccEEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCc
Q 003300 508 LQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRE 587 (832)
Q Consensus 508 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 587 (832)
+++|+|++|.+...-...|..+.+|..|.|+.|.+.+.-+..|++|++|+.|+ +..|.+.......+..|.+|++|..
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld--LnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD--LNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh--ccccceeeehhhhhcCchhhhhhhh
Confidence 88888888775544445677888888888888865544445677788888888 6666665444455666666665543
Q ss_pred --eeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCC-
Q 003300 588 --CGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIF- 664 (832)
Q Consensus 588 --l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~- 664 (832)
.+++. +....|..+.+++.|++..|+++.... +.+..+..|+.|+++.|.+.++
T Consensus 253 qrN~I~k---------L~DG~Fy~l~kme~l~L~~N~l~~vn~--------------g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 253 QRNDISK---------LDDGAFYGLEKMEHLNLETNRLQAVNE--------------GWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred hhcCccc---------ccCcceeeecccceeecccchhhhhhc--------------ccccccchhhhhccchhhhheee
Confidence 23322 223456777788888888777543221 2455667777777777777665
Q ss_pred CchhccccCCcEEEEeccCCCCcCCCCCCcc-ccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCccccee
Q 003300 665 PKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSL 743 (832)
Q Consensus 665 p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lp-L~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 743 (832)
++....+++|+.|+|++|. +..++ -.+-.|+.++.|+++.|.+..... ..+.++.+|+.|
T Consensus 310 ~d~WsftqkL~~LdLs~N~-------i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e------------~af~~lssL~~L 370 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNR-------ITRLDEGSFRVLSQLEELNLSHNSIDHLAE------------GAFVGLSSLHKL 370 (873)
T ss_pred cchhhhcccceeEeccccc-------cccCChhHHHHHHHhhhhcccccchHHHHh------------hHHHHhhhhhhh
Confidence 4445566777777777774 33333 223334555566666665543321 113455666666
Q ss_pred eccccccccccccccccccccCCCCccceeeecccccccCCCC-CCCCCCCcCeEEEcCChh
Q 003300 744 IIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 744 ~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 804 (832)
+|++. .+ .|.+.. ....+..+|+|+.|.+.+|. ++.+|. .+..+++|++|++.+|+.
T Consensus 371 dLr~N-~l-s~~IED-aa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 371 DLRSN-EL-SWCIED-AAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cCcCC-eE-EEEEec-chhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcc
Confidence 55442 11 111111 12234456666666665544 666665 344566666666666654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.2e-21 Score=239.96 Aligned_cols=306 Identities=21% Similarity=0.187 Sum_probs=150.7
Q ss_pred CcEEecCCCcc-ccccccCCCCceeEEEeCCcCcc-cccccccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIR-EIPKNVGKLIHLRYLNLSELGIE-RLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.....+|..+.++++|++|++++|
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 45555555543 34455555555555555555544 34455555555555555555444445555555555555555555
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCC--------------------Chh
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVS--------------------HLD 600 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~--------------------~~~ 600 (832)
.....+|..+..+++|+.|+ +.+|.+.+..+..+. .+.+|+.+++.+..-.. .+.
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~--L~~n~l~~~~p~~l~---~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQ--LWSNKFSGEIPKNLG---KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred ccCCcCChhHhcCCCCCEEE--CcCCCCcCcCChHHh---CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 44444444455555555554 333333322222222 22222233222211000 000
Q ss_pred hhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCC-CCchhccccCCcEEEE
Q 003300 601 EAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNI-FPKWLTSLTNLRNLYL 679 (832)
Q Consensus 601 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~l~~l~~L~~L~L 679 (832)
......+..+++|+.|++++|.+.... ...+..+++|+.|++++|.... +|.++..+++|+.|+|
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~--------------p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGEL--------------PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEeeeEC--------------ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 001112334455555555555432111 1123334455555555554432 2334445555555555
Q ss_pred eccCCCCcCCCCCCcc-ccceec----------------cccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccce
Q 003300 680 RSCVKCEHLPPLGKLP-LEKLEL----------------RNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKS 742 (832)
Q Consensus 680 ~~~~~~~~l~~l~~lp-L~~l~l----------------~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 742 (832)
++|.....+|.....+ ++.+++ ..+..|++.+|.+.+. .+..+..+++|+.
T Consensus 460 ~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------~p~~~~~l~~L~~ 527 (968)
T PLN00113 460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE------------IPDELSSCKKLVS 527 (968)
T ss_pred cCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee------------CChHHcCccCCCE
Confidence 5554433333221111 222222 2222233333333321 2234567778888
Q ss_pred eeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChhh
Q 003300 743 LIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPIL 805 (832)
Q Consensus 743 L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L 805 (832)
|+++++. + ....+..+..+++|+.|++++|.....+|..+..+++|+.|++++|+..
T Consensus 528 L~Ls~N~-l-----~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 528 LDLSHNQ-L-----SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred EECCCCc-c-----cccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 8776652 2 2234456778899999999999977789998888999999999999754
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.4e-23 Score=216.00 Aligned_cols=294 Identities=19% Similarity=0.191 Sum_probs=188.4
Q ss_pred CcEEecCCCccc--cccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcc-cccccCCceeecCC
Q 003300 463 SPFRLHSNLIRE--IPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAG-IGKLKNMRSLLNGE 539 (832)
Q Consensus 463 r~L~L~~n~l~~--lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~l~~ 539 (832)
|.+.+.+|++.. +|..+.++..|..||||+|++.+.|..+..-+++-+|+|++|+ +..+|.. +.+|+.|-+|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc
Confidence 555666666543 6777777777777777777777777777777777777777755 5566654 45677777777777
Q ss_pred ccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEE
Q 003300 540 TYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLE 619 (832)
Q Consensus 540 ~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 619 (832)
| .+..+|+.+..|..|++|. +++|.+ ....+..|++++.|..+.+++....- .-...++..+.+|..++++
T Consensus 160 N-rLe~LPPQ~RRL~~LqtL~--Ls~NPL---~hfQLrQLPsmtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 160 N-RLEMLPPQIRRLSMLQTLK--LSNNPL---NHFQLRQLPSMTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred c-hhhhcCHHHHHHhhhhhhh--cCCChh---hHHHHhcCccchhhhhhhcccccchh---hcCCCchhhhhhhhhcccc
Confidence 7 4566777777777777777 556553 23344556666666666655532110 0011245566777777777
Q ss_pred EecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccce
Q 003300 620 FGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKL 699 (832)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l 699 (832)
.|++... .+.+....+|+.|++++|.+..+.-....-.+|++|+|+.|+ +..+|-...
T Consensus 231 ~N~Lp~v---------------Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-------Lt~LP~avc 288 (1255)
T KOG0444|consen 231 ENNLPIV---------------PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-------LTVLPDAVC 288 (1255)
T ss_pred ccCCCcc---------------hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-------hccchHHHh
Confidence 7764322 223445567777777777766654444445667777777774 344454444
Q ss_pred eccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccc
Q 003300 700 ELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCN 779 (832)
Q Consensus 700 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (832)
.|+.+..|...+|++... ++++.++.+.+|+.+...+. .|+- .|++++.++.|+.|.|+.|.
T Consensus 289 KL~kL~kLy~n~NkL~Fe-----------GiPSGIGKL~~Levf~aanN-~LEl------VPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFE-----------GIPSGIGKLIQLEVFHAANN-KLEL------VPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hhHHHHHHHhccCccccc-----------CCccchhhhhhhHHHHhhcc-cccc------CchhhhhhHHHHHhcccccc
Confidence 555666666666665543 23455677777777755542 2222 35677888999999995554
Q ss_pred cccCCCCCCCCCCCcCeEEEcCChhhHH
Q 003300 780 KLKALPDYLLQTTTLQDLTIWKCPILEN 807 (832)
Q Consensus 780 ~l~~lp~~~~~l~~L~~L~l~~c~~L~~ 807 (832)
+-.+|..+.-++.|+.|++.+||+|..
T Consensus 351 -LiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 351 -LITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred -eeechhhhhhcCCcceeeccCCcCccC
Confidence 888899888889999999999988754
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.1e-21 Score=203.77 Aligned_cols=313 Identities=18% Similarity=0.240 Sum_probs=239.9
Q ss_pred hcccccEEEecCcccccc---C-----CCcEEecCCCccccccccCCCCceeEEEeCCcCcc--cccccccCCCcccEEe
Q 003300 443 KLACLRALVIRQSLVIRL---S-----SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIE--RLPKTLCELYNLQKLD 512 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~~~~---~-----~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~--~lp~~~~~l~~L~~L~ 512 (832)
.+++++-|.+....+... + +.+|.+++|++.++...++.|++||.+.++.|+++ .+|..+..|..|..||
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 677777777766543211 1 37889999999999999999999999999999987 7899999999999999
Q ss_pred ccCccCccccCcccccccCCceeecCCccCcccccCC-CCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeec
Q 003300 513 IRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVG-ISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIE 591 (832)
Q Consensus 513 L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~-l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~ 591 (832)
|++|. +.+.|..+..-+++-.|++++| .+..+|.. +-+|+-|-.|+ +++|.+.. .+ .....|.+|+.+.++
T Consensus 110 LShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLD--LS~NrLe~-LP---PQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 110 LSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLD--LSNNRLEM-LP---PQIRRLSMLQTLKLS 181 (1255)
T ss_pred cchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhc--cccchhhh-cC---HHHHHHhhhhhhhcC
Confidence 99976 8999999999999999999999 56677865 67888888888 77777433 22 234455566666666
Q ss_pred CCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccc
Q 003300 592 GLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSL 671 (832)
Q Consensus 592 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l 671 (832)
+. .+.....-.+..+++|+.|++++.+-+ ...+..++..+.+|..++++.|....+|+.+.++
T Consensus 182 ~N----PL~hfQLrQLPsmtsL~vLhms~TqRT-------------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l 244 (1255)
T KOG0444|consen 182 NN----PLNHFQLRQLPSMTSLSVLHMSNTQRT-------------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL 244 (1255)
T ss_pred CC----hhhHHHHhcCccchhhhhhhcccccch-------------hhcCCCchhhhhhhhhccccccCCCcchHHHhhh
Confidence 52 233333445667788888888876532 3344456667789999999999999999999999
Q ss_pred cCCcEEEEeccCCCCcCCCCCCccccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccc
Q 003300 672 TNLRNLYLRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEEL 751 (832)
Q Consensus 672 ~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 751 (832)
++|+.|+|++|. +..+.+..-.-.+++.|+++.|+++.. +..+..+++|+.|.+.+. .|
T Consensus 245 ~~LrrLNLS~N~-------iteL~~~~~~W~~lEtLNlSrNQLt~L-------------P~avcKL~kL~kLy~n~N-kL 303 (1255)
T KOG0444|consen 245 RNLRRLNLSGNK-------ITELNMTEGEWENLETLNLSRNQLTVL-------------PDAVCKLTKLTKLYANNN-KL 303 (1255)
T ss_pred hhhheeccCcCc-------eeeeeccHHHHhhhhhhccccchhccc-------------hHHHhhhHHHHHHHhccC-cc
Confidence 999999999996 333332232334677888888988764 334678899999966542 22
Q ss_pred cccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChhhH
Q 003300 752 EEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPILE 806 (832)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~ 806 (832)
.- .+.|..++.+..|+.+..++|. ++-+|.++..|..|+.|.++.|..++
T Consensus 304 ~F----eGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 304 TF----EGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred cc----cCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccceee
Confidence 21 2346778899999999998765 99999999999999999999886643
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=9.1e-21 Score=195.97 Aligned_cols=311 Identities=20% Similarity=0.242 Sum_probs=233.6
Q ss_pred cccccEEEecCccccccC---------CCcEEecCCCccccccc-cCCCCceeEEEeCCcCccccc-ccccCCCcccEEe
Q 003300 444 LACLRALVIRQSLVIRLS---------SSPFRLHSNLIREIPKN-VGKLIHLRYLNLSELGIERLP-KTLCELYNLQKLD 512 (832)
Q Consensus 444 ~~~Lr~L~~~~~~~~~~~---------~r~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~ 512 (832)
..+|..|.+..|.+...- +|+|||+.|.|..+|.. |..=.++++|+|++|.|+.+. ..|..+.+|-+|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 445999999988753321 49999999999999854 555689999999999999774 5689999999999
Q ss_pred ccCccCccccC-cccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeec
Q 003300 513 IRRCRNLKELP-AGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIE 591 (832)
Q Consensus 513 L~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~ 591 (832)
|+.|. +..+| ..|.+|++|+.|+|..|.+-..--..|.+|.+|+.|. +..|.+.......+-.+.++..|. +.
T Consensus 204 LsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk--lqrN~I~kL~DG~Fy~l~kme~l~---L~ 277 (873)
T KOG4194|consen 204 LSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK--LQRNDISKLDDGAFYGLEKMEHLN---LE 277 (873)
T ss_pred cccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh--hhhcCcccccCcceeeecccceee---cc
Confidence 99987 55666 4677899999999999965333234588999999999 777877766666666666665443 32
Q ss_pred CCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCc-hhcc
Q 003300 592 GLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPK-WLTS 670 (832)
Q Consensus 592 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~l~~ 670 (832)
. ..+..+....+.+++.|+.|++++|.+..+..+ ++...+.|+.|+|+.|...++++ .+..
T Consensus 278 ~----N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d--------------~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 278 T----NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID--------------SWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred c----chhhhhhcccccccchhhhhccchhhhheeecc--------------hhhhcccceeEeccccccccCChhHHHH
Confidence 2 223445556788999999999999987654433 55667899999999999998854 5678
Q ss_pred ccCCcEEEEeccCCCCcCCCCCCcc-ccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccc
Q 003300 671 LTNLRNLYLRSCVKCEHLPPLGKLP-LEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAME 749 (832)
Q Consensus 671 l~~L~~L~L~~~~~~~~l~~l~~lp-L~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 749 (832)
+..|+.|.|++|. +..+. ..+-.+++++.|++..|.++..-. .-...+.++++|+.|.+.+.
T Consensus 340 L~~Le~LnLs~Ns-------i~~l~e~af~~lssL~~LdLr~N~ls~~IE---------Daa~~f~gl~~LrkL~l~gN- 402 (873)
T KOG4194|consen 340 LSQLEELNLSHNS-------IDHLAEGAFVGLSSLHKLDLRSNELSWCIE---------DAAVAFNGLPSLRKLRLTGN- 402 (873)
T ss_pred HHHhhhhcccccc-------hHHHHhhHHHHhhhhhhhcCcCCeEEEEEe---------cchhhhccchhhhheeecCc-
Confidence 9999999999996 45555 455567788888888888765322 11233678999999988774
Q ss_pred cccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcC
Q 003300 750 ELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWK 801 (832)
Q Consensus 750 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 801 (832)
+++.+.. ..+..|++|++|+|.+|+....=|..+..+ .|++|.+..
T Consensus 403 qlk~I~k-----rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 403 QLKSIPK-----RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eeeecch-----hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 5555543 567789999999999988444345566655 888887654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=1.3e-21 Score=193.51 Aligned_cols=192 Identities=24% Similarity=0.305 Sum_probs=118.4
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
+.|+.++|.+..+|++++.+..|..|+..+|++..+|+.+.++.+|..|++.+|. +..+|+..-+++.|++|+...| .
T Consensus 117 ~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~ 194 (565)
T KOG0472|consen 117 VKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-L 194 (565)
T ss_pred hhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-h
Confidence 4555555555555555555555555555555555556555556666666665544 4444444444666666666555 4
Q ss_pred cccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEec
Q 003300 543 LKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGR 622 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 622 (832)
++.+|..++.+.+|..|+ +..|.+.. ...|..+..|..| .+.. ..+..+....+.+++++..|++..|.
T Consensus 195 L~tlP~~lg~l~~L~~Ly--L~~Nki~~--lPef~gcs~L~El---h~g~----N~i~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLY--LRRNKIRF--LPEFPGCSLLKEL---HVGE----NQIEMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred hhcCChhhcchhhhHHHH--hhhccccc--CCCCCccHHHHHH---Hhcc----cHHHhhHHHHhcccccceeeeccccc
Confidence 556666666666666665 44444321 1123333332222 2211 22344455566788899999999988
Q ss_pred CCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccC
Q 003300 623 VVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~ 683 (832)
+.+.+.+ ++...+|++|++++|.+..+|..++++ .|+.|.+.+|+
T Consensus 264 lke~Pde---------------~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 264 LKEVPDE---------------ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccCchH---------------HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 7655443 455678999999999999999999998 89999998884
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=3.5e-18 Score=209.31 Aligned_cols=309 Identities=20% Similarity=0.233 Sum_probs=213.3
Q ss_pred ccccEEEecCccccc-------cCCCcEEecCCCccccccccCCCCceeEEEeCCcC-cccccccccCCCcccEEeccCc
Q 003300 445 ACLRALVIRQSLVIR-------LSSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELG-IERLPKTLCELYNLQKLDIRRC 516 (832)
Q Consensus 445 ~~Lr~L~~~~~~~~~-------~~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~-i~~lp~~~~~l~~L~~L~L~~~ 516 (832)
.+||.|.+.++.+.. ..++.|++++|.+..+|..+..+++|++|+|++|. +..+|. ++.+++|++|++++|
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 569999988754211 12589999999999999999999999999999875 667775 889999999999999
Q ss_pred cCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCC--
Q 003300 517 RNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLG-- 594 (832)
Q Consensus 517 ~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~-- 594 (832)
..+..+|..++++++|++|++++|..++.+|..+ ++++|+.|+ +.++......+.. ..+|+.+.+.+..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~--Lsgc~~L~~~p~~------~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN--LSGCSRLKSFPDI------STNISWLDLDETAIE 738 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe--CCCCCCccccccc------cCCcCeeecCCCccc
Confidence 9999999999999999999999998889999876 788888887 4444321111111 1122222222211
Q ss_pred CCCC-----------------------hhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCc
Q 003300 595 NVSH-----------------------LDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSV 651 (832)
Q Consensus 595 ~~~~-----------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 651 (832)
.++. ............++|+.|+++.|.... .+...+..+++|
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~--------------~lP~si~~L~~L 804 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV--------------ELPSSIQNLHKL 804 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc--------------ccChhhhCCCCC
Confidence 0000 000000011223567777777664321 123345678899
Q ss_pred cEEEEEeeC-CCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccceeccccccceeeCccccCCCCCCCCCCCCCCC
Q 003300 652 EKLGIILYG-GNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSS 730 (832)
Q Consensus 652 ~~L~l~~~~-~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 730 (832)
+.|++++|. ...+|..+ .+++|+.|+|++|..+..+|.+ ..+++.|++.+|.+...
T Consensus 805 ~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---------~~nL~~L~Ls~n~i~~i------------- 861 (1153)
T PLN03210 805 EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---------STNISDLNLSRTGIEEV------------- 861 (1153)
T ss_pred CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---------ccccCEeECCCCCCccC-------------
Confidence 999999875 45567765 7899999999999877665532 13455556666666542
Q ss_pred CCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCC-------------CCCCCcCeE
Q 003300 731 SPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYL-------------LQTTTLQDL 797 (832)
Q Consensus 731 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-------------~~l~~L~~L 797 (832)
+..+..+++|+.|++++|++|..... .+..+++|+.|++++|..+..++..- ..+++...+
T Consensus 862 P~si~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l 935 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCI 935 (1153)
T ss_pred hHHHhcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcc
Confidence 23467899999999999999987654 34578999999999999887654211 123344556
Q ss_pred EEcCChhhH
Q 003300 798 TIWKCPILE 806 (832)
Q Consensus 798 ~l~~c~~L~ 806 (832)
.+.+|.++.
T Consensus 936 ~f~nC~~L~ 944 (1153)
T PLN03210 936 NFINCFNLD 944 (1153)
T ss_pred ccccccCCC
Confidence 777787765
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=2e-15 Score=171.10 Aligned_cols=253 Identities=18% Similarity=0.209 Sum_probs=136.0
Q ss_pred cEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCc
Q 003300 464 PFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSL 543 (832)
Q Consensus 464 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 543 (832)
+|+++++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. .++|+.|++++|. +
T Consensus 205 ~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP-L 274 (788)
T ss_pred EEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCCc-h
Confidence 45556666666665554 2566666666666666542 3556666666654 4445532 3455666666653 3
Q ss_pred ccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecC
Q 003300 544 KYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRV 623 (832)
Q Consensus 544 ~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 623 (832)
..+|... ++|+.|+ +.+|.+... +. .+.+|+.+++++.. +..++. ...+|+.|++++|.+
T Consensus 275 ~~Lp~lp---~~L~~L~--Ls~N~Lt~L-P~------~p~~L~~LdLS~N~-L~~Lp~-------lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 275 THLPALP---SGLCKLW--IFGNQLTSL-PV------LPPGLQELSVSDNQ-LASLPA-------LPSELCKLWAYNNQL 334 (788)
T ss_pred hhhhhch---hhcCEEE--CcCCccccc-cc------cccccceeECCCCc-cccCCC-------CcccccccccccCcc
Confidence 3444322 3344444 334433211 10 01223333333211 111110 012455666666654
Q ss_pred CCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccceeccc
Q 003300 624 VDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLELRN 703 (832)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~~ 703 (832)
...+. .+.+|+.|++++|....+|.. .++|+.|++++|. +..+|.+ ..+
T Consensus 335 ~~LP~------------------lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l---------~~~ 383 (788)
T PRK15387 335 TSLPT------------------LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPAL---------PSG 383 (788)
T ss_pred ccccc------------------cccccceEecCCCccCCCCCC---Ccccceehhhccc-cccCccc---------ccc
Confidence 32210 124677888887777776653 3567777777774 2333321 134
Q ss_pred cccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccC
Q 003300 704 LKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKA 783 (832)
Q Consensus 704 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 783 (832)
+..|++.+|.+...+. ..++|+.|+++++ .++.++. .+.+|+.|++++|. ++.
T Consensus 384 L~~LdLs~N~Lt~LP~----------------l~s~L~~LdLS~N-~LssIP~---------l~~~L~~L~Ls~Nq-Lt~ 436 (788)
T PRK15387 384 LKELIVSGNRLTSLPV----------------LPSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRNQ-LTR 436 (788)
T ss_pred cceEEecCCcccCCCC----------------cccCCCEEEccCC-cCCCCCc---------chhhhhhhhhccCc-ccc
Confidence 5556666676654321 2357888877775 3443321 23467888887766 778
Q ss_pred CCCCCCCCCCcCeEEEcCChh
Q 003300 784 LPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 784 lp~~~~~l~~L~~L~l~~c~~ 804 (832)
+|..+..+++|+.|++++|+.
T Consensus 437 LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cChHHhhccCCCeEECCCCCC
Confidence 888887888888888888865
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.6e-17 Score=181.62 Aligned_cols=94 Identities=27% Similarity=0.427 Sum_probs=58.4
Q ss_pred cccEEEecCccccccC--------CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCcc
Q 003300 446 CLRALVIRQSLVIRLS--------SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCR 517 (832)
Q Consensus 446 ~Lr~L~~~~~~~~~~~--------~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~ 517 (832)
+|++|.+.++...+.+ ++.|+++.|.+.++|.+++++.+|++|+|.+|.+..+|.++..+.+|++|++++|.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 4666666665432211 26666666666666666666666666666666666666666666666666666654
Q ss_pred CccccCcccccccCCceeecCCc
Q 003300 518 NLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 518 ~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
...+|..+..++.+..+..++|
T Consensus 126 -f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 126 -FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred -cCCCchhHHhhhHHHHHhhhcc
Confidence 4455655556666666666555
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.57 E-value=8.7e-18 Score=166.70 Aligned_cols=266 Identities=23% Similarity=0.282 Sum_probs=169.4
Q ss_pred CCCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 461 SSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 461 ~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
.+..|.+++|.++.+.+.+.++..|.+|++++|++.++|++++.+..++.|+.++|+ +.++|..++.+.+|++|+.+.|
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhcccc
Confidence 346667777777777777777778888888888877788778888788888887755 6677777777778888877777
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEE
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEF 620 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 620 (832)
....+|++++.+..|..|+ ..+|++.. .+..+..+.+ |..+.+.+
T Consensus 125 -~~~el~~~i~~~~~l~dl~--~~~N~i~s-lp~~~~~~~~-------------------------------l~~l~~~~ 169 (565)
T KOG0472|consen 125 -ELKELPDSIGRLLDLEDLD--ATNNQISS-LPEDMVNLSK-------------------------------LSKLDLEG 169 (565)
T ss_pred -ceeecCchHHHHhhhhhhh--cccccccc-CchHHHHHHH-------------------------------HHHhhccc
Confidence 4556677777777777776 55555332 2222222222 22222222
Q ss_pred ecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCcccccee
Q 003300 621 GRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLE 700 (832)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~ 700 (832)
|.....++. ...+..|+.|+...|....+|+.++.+.+|..|+|..| .+..+|.++...
T Consensus 170 n~l~~l~~~---------------~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs----- 228 (565)
T KOG0472|consen 170 NKLKALPEN---------------HIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCS----- 228 (565)
T ss_pred cchhhCCHH---------------HHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccH-----
Confidence 222111111 01123344444444445556888888888888888887 444555444333
Q ss_pred ccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeeccccc
Q 003300 701 LRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNK 780 (832)
Q Consensus 701 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 780 (832)
.+..+....|.+.-.+.. ....+++|..|++++. .+++.+ ..++.+.+|+.|++++|.
T Consensus 229 --~L~Elh~g~N~i~~lpae------------~~~~L~~l~vLDLRdN-klke~P------de~clLrsL~rLDlSNN~- 286 (565)
T KOG0472|consen 229 --LLKELHVGENQIEMLPAE------------HLKHLNSLLVLDLRDN-KLKEVP------DEICLLRSLERLDLSNND- 286 (565)
T ss_pred --HHHHHHhcccHHHhhHHH------------Hhcccccceeeecccc-ccccCc------hHHHHhhhhhhhcccCCc-
Confidence 222233333443322110 1247888889988774 555543 456788999999999877
Q ss_pred ccCCCCCCCCCCCcCeEEEcCChhhH
Q 003300 781 LKALPDYLLQTTTLQDLTIWKCPILE 806 (832)
Q Consensus 781 l~~lp~~~~~l~~L~~L~l~~c~~L~ 806 (832)
+..+|..++++ .|+.|-+.|||.-+
T Consensus 287 is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 287 ISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred cccCCcccccc-eeeehhhcCCchHH
Confidence 99999999998 99999999999733
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=1.9e-15 Score=165.73 Aligned_cols=286 Identities=23% Similarity=0.284 Sum_probs=174.0
Q ss_pred hcccccEEEecCccc-----cccCCCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCcc
Q 003300 443 KLACLRALVIRQSLV-----IRLSSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCR 517 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~-----~~~~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~ 517 (832)
.+.+|.+|.+..+.. ....++.|..++|.++.+- .-..-.+|+|++++.|.++.+|+.++.+.+|+.|++.+|.
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeec-cccccccceeeecchhhhhcchHHHHhcccceEecccchh
Confidence 444555555444331 1122466666777666331 1223457888888888888888888888888888888866
Q ss_pred CccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCc-CCceeecCCCCC
Q 003300 518 NLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQL-LRECGIEGLGNV 596 (832)
Q Consensus 518 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~-L~~l~i~~~~~~ 596 (832)
+..+|..+..+.+|+.|.+..| .+..+|....++++|++|+ +..|.+....... +..+.. |+.++.+....
T Consensus 276 -l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLd--L~~N~L~~lp~~~---l~v~~~~l~~ln~s~n~l- 347 (1081)
T KOG0618|consen 276 -LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLD--LQSNNLPSLPDNF---LAVLNASLNTLNVSSNKL- 347 (1081)
T ss_pred -HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeee--ehhccccccchHH---HhhhhHHHHHHhhhhccc-
Confidence 5778887888888888888877 5667777777788888888 5555543222211 111111 22222222110
Q ss_pred CChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCch-hccccCCc
Q 003300 597 SHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKW-LTSLTNLR 675 (832)
Q Consensus 597 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-l~~l~~L~ 675 (832)
+. .....=..+..|+.|++.+|.++ +..++.+..+.+|+.|++++|....||.. +.+++.|+
T Consensus 348 ~~---lp~~~e~~~~~Lq~LylanN~Lt--------------d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 348 ST---LPSYEENNHAALQELYLANNHLT--------------DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE 410 (1081)
T ss_pred cc---cccccchhhHHHHHHHHhcCccc--------------ccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence 00 01111123345667777777653 23345666778888888888887777764 44778888
Q ss_pred EEEEeccCCCCcCCCCCCccccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccc
Q 003300 676 NLYLRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWN 755 (832)
Q Consensus 676 ~L~L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 755 (832)
.|+|++|. +..+|-+...+..++.|..-+|.+...+ .+..++.|+.++++. ++|+...
T Consensus 411 eL~LSGNk-------L~~Lp~tva~~~~L~tL~ahsN~l~~fP--------------e~~~l~qL~~lDlS~-N~L~~~~ 468 (1081)
T KOG0618|consen 411 ELNLSGNK-------LTTLPDTVANLGRLHTLRAHSNQLLSFP--------------ELAQLPQLKVLDLSC-NNLSEVT 468 (1081)
T ss_pred HHhcccch-------hhhhhHHHHhhhhhHHHhhcCCceeech--------------hhhhcCcceEEeccc-chhhhhh
Confidence 88888885 5555655556666777776677665432 256677777777764 4565554
Q ss_pred cccccccccCCCCccceeeecccccc
Q 003300 756 YRITRKENISIMPRLSSLEVRSCNKL 781 (832)
Q Consensus 756 ~~~~~~~~~~~l~~L~~L~l~~c~~l 781 (832)
..... .-|+|+.|++++|..+
T Consensus 469 l~~~~-----p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 469 LPEAL-----PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhC-----CCcccceeeccCCccc
Confidence 42111 1267888888777743
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=2.9e-13 Score=153.74 Aligned_cols=253 Identities=19% Similarity=0.133 Sum_probs=156.9
Q ss_pred ccEEEecCccccccC------CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCcc
Q 003300 447 LRALVIRQSLVIRLS------SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLK 520 (832)
Q Consensus 447 Lr~L~~~~~~~~~~~------~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~ 520 (832)
-..|.+.++.+...+ ++.|++.+|+++.+|.. +++|++|++++|+|+.+|.. ..+|+.|++++|. +.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~ 275 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LT 275 (788)
T ss_pred CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc-hh
Confidence 345555555432211 37888888888888753 57788999999888888763 3578888888876 55
Q ss_pred ccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChh
Q 003300 521 ELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLD 600 (832)
Q Consensus 521 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~ 600 (832)
.+|.. +.+|+.|++++|. ++.+|.. +++|+.|+ +.+|.+... +.... . |..+.+.+.. +..++
T Consensus 276 ~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~Ld--LS~N~L~~L-p~lp~---~---L~~L~Ls~N~-L~~LP 338 (788)
T PRK15387 276 HLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELS--VSDNQLASL-PALPS---E---LCKLWAYNNQ-LTSLP 338 (788)
T ss_pred hhhhc---hhhcCEEECcCCc-ccccccc---ccccceeE--CCCCccccC-CCCcc---c---ccccccccCc-ccccc
Confidence 66653 3567788888884 4556653 46788887 666665432 11111 1 2222222211 11111
Q ss_pred hhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEe
Q 003300 601 EAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLR 680 (832)
Q Consensus 601 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~ 680 (832)
. ...+|+.|++++|.+...+. .+.+|+.|.+++|....+|.. .++|+.|+|+
T Consensus 339 ~-------lp~~Lq~LdLS~N~Ls~LP~------------------lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs 390 (788)
T PRK15387 339 T-------LPSGLQELSVSDNQLASLPT------------------LPSELYKLWAYNNRLTSLPAL---PSGLKELIVS 390 (788)
T ss_pred c-------cccccceEecCCCccCCCCC------------------CCcccceehhhccccccCccc---ccccceEEec
Confidence 1 11478899999888654321 245788888888888777753 3578999999
Q ss_pred ccCCCCcCCCCCCccccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeecccccccccccccccc
Q 003300 681 SCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITR 760 (832)
Q Consensus 681 ~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 760 (832)
+|. +..+|.. .+.+..|++++|.+...+. .+.+|+.|+++++ .++.+
T Consensus 391 ~N~-Lt~LP~l---------~s~L~~LdLS~N~LssIP~----------------l~~~L~~L~Ls~N-qLt~L------ 437 (788)
T PRK15387 391 GNR-LTSLPVL---------PSELKELMVSGNRLTSLPM----------------LPSGLLSLSVYRN-QLTRL------ 437 (788)
T ss_pred CCc-ccCCCCc---------ccCCCEEEccCCcCCCCCc----------------chhhhhhhhhccC-ccccc------
Confidence 885 3334421 1345566777777664321 2346778877663 34432
Q ss_pred ccccCCCCccceeeecccccccCC
Q 003300 761 KENISIMPRLSSLEVRSCNKLKAL 784 (832)
Q Consensus 761 ~~~~~~l~~L~~L~l~~c~~l~~l 784 (832)
|..+..+++|+.|+|++|+.-...
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred ChHHhhccCCCeEECCCCCCCchH
Confidence 345667899999999998844333
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=1.2e-13 Score=158.12 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=31.0
Q ss_pred cccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCC----CCCCcCeEEEcCChh
Q 003300 738 PKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLL----QTTTLQDLTIWKCPI 804 (832)
Q Consensus 738 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~----~l~~L~~L~l~~c~~ 804 (832)
++|+.|++++| .|..++. . ..++|+.|++++|. +..+|..+. .++.+..|++.+||.
T Consensus 367 ~~L~~LdLs~N-~Lt~LP~------~--l~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 367 PTITTLDVSRN-ALTNLPE------N--LPAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCcCEEECCCC-cCCCCCH------h--HHHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 45666666654 3333221 1 11356777776655 556665432 246667777777765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=2e-12 Score=148.13 Aligned_cols=96 Identities=22% Similarity=0.368 Sum_probs=68.3
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
.+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|. +..+|..+. .+|+.|++++|
T Consensus 201 L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N- 272 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFHN- 272 (754)
T ss_pred CcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCC-
Confidence 3778888888888887664 478888888888888877654 468888888876 556776653 47888888877
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccC
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
.+..+|..+. ++|+.|+ +.+|.+.
T Consensus 273 ~L~~LP~~l~--~sL~~L~--Ls~N~Lt 296 (754)
T PRK15370 273 KISCLPENLP--EELRYLS--VYDNSIR 296 (754)
T ss_pred ccCccccccC--CCCcEEE--CCCCccc
Confidence 4446676553 4677777 5555543
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=6.3e-14 Score=123.20 Aligned_cols=102 Identities=28% Similarity=0.394 Sum_probs=72.1
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
..|.|++|.++.+|..+..+.+|+.|++++|+|+++|.+++.+++|+.|+++-|. +..+|.+|+.++-|+.||+++|..
T Consensus 36 TrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 36 TRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhcccccc
Confidence 4456777777777777777777777777777777777777777777777777754 666777777777777777776643
Q ss_pred c-ccccCCCCCCCCCccCCceeeCCc
Q 003300 543 L-KYMPVGISKLTSLRTLDKFVVGGG 567 (832)
Q Consensus 543 ~-~~~p~~l~~L~~L~~L~~~~~~~~ 567 (832)
. ..+|..|..++-|+.|+ +.+|.
T Consensus 115 ~e~~lpgnff~m~tlraly--l~dnd 138 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALY--LGDND 138 (264)
T ss_pred ccccCCcchhHHHHHHHHH--hcCCC
Confidence 3 34666666677777766 55554
No 20
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.30 E-value=5.8e-10 Score=115.26 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=118.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH---
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY--- 282 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--- 282 (832)
..+++.|+|.+|+||||+++.+++.... ..+ ..+|+ +....+..+++..|+..++.+.... +.......+..+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHH
Confidence 3458999999999999999999975321 111 12333 3344567788999999988764432 222233333332
Q ss_pred --HcCCceEEEEeCCCCCCcccchhhhhhhcC---CCCCcEEEEEeCCHHHHHHhC----------CcCeeeCCCCChHH
Q 003300 283 --IMGKKFFLVLDDVWDGDYKKWDPFFSCLKN---GHHESKILITTRDRSVALQLG----------SIDIIPVKELGEGE 347 (832)
Q Consensus 283 --l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~~~~~~~~----------~~~~~~l~~L~~~~ 347 (832)
..+++.++|+||+|..+...++.+...... ......|++|.... ....+. ....+++.+++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 257889999999988765566665433221 12223455665432 222211 13467899999999
Q ss_pred HHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHh
Q 003300 348 CCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLL 393 (832)
Q Consensus 348 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 393 (832)
...++.......+......-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999988765332211122346788999999999999999988776
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=1.9e-13 Score=120.18 Aligned_cols=121 Identities=22% Similarity=0.385 Sum_probs=103.5
Q ss_pred cccccEEEecCccccccC--------CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccC
Q 003300 444 LACLRALVIRQSLVIRLS--------SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRR 515 (832)
Q Consensus 444 ~~~Lr~L~~~~~~~~~~~--------~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~ 515 (832)
+++..-|.++.|++...+ +.+|++.+|+++.+|.+++.++.|+.|++.-|.+..+|..|+.++-|++||+.+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 344455666666643332 389999999999999999999999999999999999999999999999999998
Q ss_pred ccCc-cccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCc
Q 003300 516 CRNL-KELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGG 567 (832)
Q Consensus 516 ~~~~-~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~ 567 (832)
|+.. ..+|..|..++.|+.|+++.| ..+.+|..++++++||.|. +.+|.
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~--lrdnd 161 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILS--LRDND 161 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEe--eccCc
Confidence 7644 468988999999999999999 6788999999999999998 65665
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=2.8e-13 Score=134.96 Aligned_cols=119 Identities=24% Similarity=0.319 Sum_probs=81.5
Q ss_pred CcEEecCCCcccccc-ccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccCc-ccccccCCceeecCC
Q 003300 463 SPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNGE 539 (832)
Q Consensus 463 r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~ 539 (832)
..++|..|+|+++|+ .|+.+++||.||||+|+|+.| |..|..+.+|..|-+.+|+.+..+|. .|++|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 567888888888875 477888888888888888865 77788888888888777666777775 477888888887777
Q ss_pred ccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCC
Q 003300 540 TYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQ 583 (832)
Q Consensus 540 ~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~ 583 (832)
|.+.-.....+..|++|..|. +.+|.+.......+..+..++
T Consensus 150 n~i~Cir~~al~dL~~l~lLs--lyDn~~q~i~~~tf~~l~~i~ 191 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLS--LYDNKIQSICKGTFQGLAAIK 191 (498)
T ss_pred hhhcchhHHHHHHhhhcchhc--ccchhhhhhccccccchhccc
Confidence 644433344577777777777 444443333333444444443
No 23
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.22 E-value=8.6e-11 Score=118.94 Aligned_cols=196 Identities=20% Similarity=0.146 Sum_probs=103.5
Q ss_pred eecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH----
Q 003300 182 VCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA---- 257 (832)
Q Consensus 182 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~---- 257 (832)
|+||++++++|.+++... ..+.+.|+|..|+|||+|++++.+. .+..-..++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 799999999999988763 3468999999999999999999973 3222124555544333332211111
Q ss_pred ---------HHHHhCCCC------CCCCcHHHHHHHHHHHHc--CCceEEEEeCCCCCC------cccchhhhhhhcC--
Q 003300 258 ---------IIEGLGVSA------SGLSEFESLMKQIQEYIM--GKKFFLVLDDVWDGD------YKKWDPFFSCLKN-- 312 (832)
Q Consensus 258 ---------i~~~l~~~~------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~-- 312 (832)
+...+.... ............+.+.+. +++.+||+||+.... ..-...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 111111110 011222233333434443 445999999995433 0111223333332
Q ss_pred CCCCcEEEEEeCCHHHHHH--------hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh
Q 003300 313 GHHESKILITTRDRSVALQ--------LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL 384 (832)
Q Consensus 313 ~~~gs~iivTtr~~~~~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 384 (832)
......+|+++....+... .+....+.+++|+.+++++++....-.. . .- +..++...+|...+||+|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCHH
Confidence 2233445566555555433 2334569999999999999999975432 1 11 2235666899999999999
Q ss_pred HHHH
Q 003300 385 AAKV 388 (832)
Q Consensus 385 ai~~ 388 (832)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.21 E-value=6.7e-10 Score=121.66 Aligned_cols=227 Identities=15% Similarity=0.072 Sum_probs=138.7
Q ss_pred cCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 178 DEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 178 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
.+..++||+++++++...+...-. ......+.|+|.+|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 446799999999999999855321 124456789999999999999999985333222235677777777778889999
Q ss_pred HHHHhCCC-C-CCCCcHHHHHHHHHHHHc--CCceEEEEeCCCCCC-cccchhhhhhhc--CCCCCcE--EEEEeCCHHH
Q 003300 258 IIEGLGVS-A-SGLSEFESLMKQIQEYIM--GKKFFLVLDDVWDGD-YKKWDPFFSCLK--NGHHESK--ILITTRDRSV 328 (832)
Q Consensus 258 i~~~l~~~-~-~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~~~~~l~~~l~--~~~~gs~--iivTtr~~~~ 328 (832)
|+.++... . ....+.+.+...+.+.++ ++..+||+|+++.-. ....+.+...+. ....+++ +|.++....+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 99998752 2 123356667777777775 456899999996632 111222332221 1223333 6666665443
Q ss_pred HHHhC-------CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHH----cCCChhHHHHHHHHh--c-
Q 003300 329 ALQLG-------SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHK----CKGLPLAAKVIGNLL--R- 394 (832)
Q Consensus 329 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~----~~g~Plai~~~~~~l--~- 394 (832)
..... ....+.+.+++.++..+++...+..... ...-.++....|++. .|..+.|+.++-.+. +
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~--~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFY--PGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcc--cCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 32211 1346899999999999999987632211 011112333444444 455677776654332 1
Q ss_pred --CC--CCHHHHHHHHhh
Q 003300 395 --SK--STVKEWQRILES 408 (832)
Q Consensus 395 --~~--~~~~~w~~~~~~ 408 (832)
+. -+.++...+.+.
T Consensus 264 ~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEK 281 (394)
T ss_pred HcCCCCcCHHHHHHHHHH
Confidence 11 145666665553
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=4e-13 Score=133.87 Aligned_cols=115 Identities=21% Similarity=0.259 Sum_probs=77.1
Q ss_pred EEecCCCccccccccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCcccccccCCceeecCCccCc
Q 003300 465 FRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSL 543 (832)
Q Consensus 465 L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 543 (832)
.+-++-.++++|..+- ..-..+.|..|+|+.+|+ .|+.+++|+.|||++|.+...-|..|..+.+|..|-+.++..+
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3445556777776553 245567777888887764 4778888888888887766666777888888877777775566
Q ss_pred ccccCC-CCCCCCCccCCceeeCCccCCCCccCccccccCC
Q 003300 544 KYMPVG-ISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQ 583 (832)
Q Consensus 544 ~~~p~~-l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~ 583 (832)
+.+|.+ |++|.+|+.|. +.-+.+.......+.++++++
T Consensus 129 ~~l~k~~F~gL~slqrLl--lNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLL--LNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred hhhhhhHhhhHHHHHHHh--cChhhhcchhHHHHHHhhhcc
Confidence 777755 77788888777 555554444444555555544
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=5.4e-11 Score=138.62 Aligned_cols=150 Identities=26% Similarity=0.263 Sum_probs=105.9
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcC--ccccccc-ccCCCcccEEeccCccCccccCcccccccCCceeecCC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELG--IERLPKT-LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 539 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~--i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 539 (832)
|...+.+|.+..++.... ++.|++|-+.+|. +..++.. |..++.|++|||++|.....+|..++.|-+||+|++++
T Consensus 526 rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 566667777777766654 4579999999986 6666554 77899999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEE
Q 003300 540 TYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLE 619 (832)
Q Consensus 540 ~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 619 (832)
+ .+..+|.++++|..|.+|++...+.. ... ..-...|.+|+.+.+.... ..........+.++.+|+.+...
T Consensus 605 t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l--~~~---~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 605 T-GISHLPSGLGNLKKLIYLNLEVTGRL--ESI---PGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred C-CccccchHHHHHHhhheecccccccc--ccc---cchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheee
Confidence 8 56789999999999999995443322 111 1223335666666555433 11112222334666777777765
Q ss_pred Ee
Q 003300 620 FG 621 (832)
Q Consensus 620 ~~ 621 (832)
..
T Consensus 677 ~~ 678 (889)
T KOG4658|consen 677 IS 678 (889)
T ss_pred cc
Confidence 44
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.08 E-value=8.4e-09 Score=111.77 Aligned_cols=205 Identities=13% Similarity=0.057 Sum_probs=126.5
Q ss_pred cCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh-ccC---CeeEEEEeCCCccHHH
Q 003300 178 DEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK-RNF---EKVIWVCVSDTFEGIR 253 (832)
Q Consensus 178 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~ 253 (832)
.+..++||++++++|..++..... ......+.|+|++|+|||++++.++++.... ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999875321 1244678999999999999999999842211 111 1467888877777788
Q ss_pred HHHHHHHHhC---CCCC-CCCcHHHHHHHHHHHHc--CCceEEEEeCCCCCCcccchh-hhhhhcC----CC--CCcEEE
Q 003300 254 VAKAIIEGLG---VSAS-GLSEFESLMKQIQEYIM--GKKFFLVLDDVWDGDYKKWDP-FFSCLKN----GH--HESKIL 320 (832)
Q Consensus 254 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~----~~--~gs~ii 320 (832)
++..|+.++. ...+ ...+..+....+.+.+. +++++||+|+++.-. ...+. +...+.. .. ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEE
Confidence 9999999883 3222 22344555666666663 567899999996642 11112 2222211 11 223455
Q ss_pred EEeCCHHHHHHhC-----C--cCeeeCCCCChHHHHHHHHHHhhcc-CCCCCccchHHHHHHHHHHcCCChhH
Q 003300 321 ITTRDRSVALQLG-----S--IDIIPVKELGEGECCLLFKQIAFLR-RSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 321 vTtr~~~~~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
.+|........+. . ...+.+.+.+.++..+++...+... ......++..+...+++....|.|-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 6665443322211 1 2468999999999999999886421 11111223334455667777788844
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=5.1e-12 Score=134.63 Aligned_cols=274 Identities=19% Similarity=0.123 Sum_probs=121.2
Q ss_pred cCCCCceeEEEeCCcCcc-----cccccccCCCcccEEeccCccCc------cccCcccccccCCceeecCCccCccccc
Q 003300 479 VGKLIHLRYLNLSELGIE-----RLPKTLCELYNLQKLDIRRCRNL------KELPAGIGKLKNMRSLLNGETYSLKYMP 547 (832)
Q Consensus 479 l~~l~~L~~L~Ls~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~------~~lp~~l~~l~~L~~L~l~~~~~~~~~p 547 (832)
+..+.+|++|++++|.++ .++..+...++|++|+++++... ..++..+..+++|++|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 334445666666666552 34444555555666666554422 1122334455566666666654432222
Q ss_pred CCCCCCC---CCccCCceeeCCccCCCCcc-CccccccC-CcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEec
Q 003300 548 VGISKLT---SLRTLDKFVVGGGIDGSNTC-RLESLKNL-QLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGR 622 (832)
Q Consensus 548 ~~l~~L~---~L~~L~~~~~~~~~~~~~~~-~l~~l~~L-~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 622 (832)
..+..+. +|++|+ +.++.+...... ....+..+ .+|+.+.+.++.-...........+..+.+|+.|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~--ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 99 GVLESLLRSSSLQELK--LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHhccCcccEEE--eeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 2222222 255555 333332210000 01112222 3344444443321111111112234455566666666665
Q ss_pred CCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCC-----CCchhccccCCcEEEEeccCCCCcCCCCCCcccc
Q 003300 623 VVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNI-----FPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLE 697 (832)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~ 697 (832)
+... ....+...+...++|+.|++++|.... ++..+..+++|++|++++|.... ..
T Consensus 177 l~~~----------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-------~~-- 237 (319)
T cd00116 177 IGDA----------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-------AG-- 237 (319)
T ss_pred CchH----------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch-------HH--
Confidence 4321 111222233344566666666665432 12333455666777766664111 00
Q ss_pred ceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecc
Q 003300 698 KLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRS 777 (832)
Q Consensus 698 ~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 777 (832)
+.. + ...+ ....+.|++|++++| .+++... ......+..+++|+.|++++
T Consensus 238 ---~~~---l---~~~~-------------------~~~~~~L~~L~l~~n-~i~~~~~-~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 238 ---AAA---L---ASAL-------------------LSPNISLLTLSLSCN-DITDDGA-KDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred ---HHH---H---HHHH-------------------hccCCCceEEEccCC-CCCcHHH-HHHHHHHhcCCCccEEECCC
Confidence 000 0 0000 012367777777776 3332111 00112234567888888888
Q ss_pred cccccC----CCCCCCCC-CCcCeEEEcCCh
Q 003300 778 CNKLKA----LPDYLLQT-TTLQDLTIWKCP 803 (832)
Q Consensus 778 c~~l~~----lp~~~~~l-~~L~~L~l~~c~ 803 (832)
|..-.. +...+... +.|++|++.++|
T Consensus 288 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 288 NKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 773322 22222223 678888887765
No 29
>PF05729 NACHT: NACHT domain
Probab=99.02 E-value=2.5e-09 Score=101.65 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=89.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhcc----CCeeEEEEeCCCccHH---HHHHHHHHHhCCCCCCCCcHHHHHHHHH
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEGI---RVAKAIIEGLGVSASGLSEFESLMKQIQ 280 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 280 (832)
|++.|+|.+|+||||+++.++........ +..++|++........ .+...|..+...... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 57899999999999999999875333322 3456677665543322 344444444332211 1111 122
Q ss_pred HH-HcCCceEEEEeCCCCCCcc-------cchh-hhhhhcC-CCCCcEEEEEeCCHHH---HHHhCCcCeeeCCCCChHH
Q 003300 281 EY-IMGKKFFLVLDDVWDGDYK-------KWDP-FFSCLKN-GHHESKILITTRDRSV---ALQLGSIDIIPVKELGEGE 347 (832)
Q Consensus 281 ~~-l~~k~~LlVlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~iivTtr~~~~---~~~~~~~~~~~l~~L~~~~ 347 (832)
.. .+.++++||+|++++.... .+.. +...+.. ..++.++|||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2578999999999654321 1222 2233333 3578999999998766 3333445689999999999
Q ss_pred HHHHHHHHh
Q 003300 348 CCLLFKQIA 356 (832)
Q Consensus 348 ~~~lf~~~~ 356 (832)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998864
No 30
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.01 E-value=8.2e-09 Score=126.42 Aligned_cols=196 Identities=16% Similarity=0.174 Sum_probs=125.9
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeC-CCccHHHHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-DTFEGIRVAKA 257 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~ 257 (832)
...+|-|..-.+.+ ... ...+++.|+|++|.||||++.++... ++.++|+++. .+.+...+...
T Consensus 13 ~~~~~~R~rl~~~l----~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHH----hcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 34567676555544 321 26789999999999999999988752 2369999986 44566666677
Q ss_pred HHHHhCCCCCC-------------CCcHHHHHHHHHHHHc--CCceEEEEeCCCCCCcccchhhhhh-hcCCCCCcEEEE
Q 003300 258 IIEGLGVSASG-------------LSEFESLMKQIQEYIM--GKKFFLVLDDVWDGDYKKWDPFFSC-LKNGHHESKILI 321 (832)
Q Consensus 258 i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~iiv 321 (832)
++..++..... ..+.......+...+. +.+++||+||++..+......+... +.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77666421111 1222333333333332 6899999999976544444433333 344456678889
Q ss_pred EeCCHHHH--HHh-CCcCeeeCC----CCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhc
Q 003300 322 TTRDRSVA--LQL-GSIDIIPVK----ELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLR 394 (832)
Q Consensus 322 Ttr~~~~~--~~~-~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 394 (832)
|||..... ... .......+. +|+.+|+.++|...... +-..+...+|.+.|+|.|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-------PIEAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-------CCCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99974211 111 112234555 99999999999876422 11245668999999999999999987775
Q ss_pred CC
Q 003300 395 SK 396 (832)
Q Consensus 395 ~~ 396 (832)
..
T Consensus 231 ~~ 232 (903)
T PRK04841 231 QN 232 (903)
T ss_pred hC
Confidence 43
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=5.9e-11 Score=126.40 Aligned_cols=268 Identities=20% Similarity=0.151 Sum_probs=135.8
Q ss_pred EEeCCcCcc--cccccccCCCcccEEeccCccCc----cccCcccccccCCceeecCCccCc------ccccCCCCCCCC
Q 003300 488 LNLSELGIE--RLPKTLCELYNLQKLDIRRCRNL----KELPAGIGKLKNMRSLLNGETYSL------KYMPVGISKLTS 555 (832)
Q Consensus 488 L~Ls~~~i~--~lp~~~~~l~~L~~L~L~~~~~~----~~lp~~l~~l~~L~~L~l~~~~~~------~~~p~~l~~L~~ 555 (832)
|+|.++.++ ..+..+..+.+|+.|++++|... ..++..+...++|++|+++++... ..++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 566666654 44555677788999999998742 235556677888999999887443 112233455666
Q ss_pred CccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhh
Q 003300 556 LRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKK 635 (832)
Q Consensus 556 L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 635 (832)
|+.|+ +.++.+.......+.. .... ++|+.|+++.|.+...
T Consensus 83 L~~L~--l~~~~~~~~~~~~~~~---------------------------l~~~-~~L~~L~ls~~~~~~~--------- 123 (319)
T cd00116 83 LQELD--LSDNALGPDGCGVLES---------------------------LLRS-SSLQELKLNNNGLGDR--------- 123 (319)
T ss_pred eeEEE--ccCCCCChhHHHHHHH---------------------------Hhcc-CcccEEEeeCCccchH---------
Confidence 66666 3344322111111111 1111 4466666666554210
Q ss_pred hchHHHhhcCCCC-CCccEEEEEeeCCCC-----CCchhccccCCcEEEEeccCCCCc-CCCCCCccccceeccccccce
Q 003300 636 EKDEQLLKTLQPP-LSVEKLGIILYGGNI-----FPKWLTSLTNLRNLYLRSCVKCEH-LPPLGKLPLEKLELRNLKSVK 708 (832)
Q Consensus 636 ~~~~~~~~~l~~~-~~L~~L~l~~~~~~~-----~p~~l~~l~~L~~L~L~~~~~~~~-l~~l~~lpL~~l~l~~l~~L~ 708 (832)
....+...+... ++|+.|++++|.... ++..+..+++|++|++++|..... ++ .++-....+.+++.|+
T Consensus 124 -~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 124 -GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR---ALAEGLKANCNLEVLD 199 (319)
T ss_pred -HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH---HHHHHHHhCCCCCEEe
Confidence 011122223333 566666666665441 233344555666666666642210 00 0000000112333333
Q ss_pred eeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccc----cCC
Q 003300 709 RVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKL----KAL 784 (832)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l----~~l 784 (832)
+.+|.+.+... ......+..+++|++|++++| .+.+..............+.|+.|++++|..- ..+
T Consensus 200 L~~n~i~~~~~--------~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 270 (319)
T cd00116 200 LNNNGLTDEGA--------SALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL 270 (319)
T ss_pred ccCCccChHHH--------HHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHH
Confidence 33333321100 000011346789999999986 34432221000000112479999999998732 223
Q ss_pred CCCCCCCCCcCeEEEcCChhhHH
Q 003300 785 PDYLLQTTTLQDLTIWKCPILEN 807 (832)
Q Consensus 785 p~~~~~l~~L~~L~l~~c~~L~~ 807 (832)
...+..+++|+.+++++|..-.+
T Consensus 271 ~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 271 AEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHhcCCCccEEECCCCCCcHH
Confidence 34445568999999999976544
No 32
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=8.2e-08 Score=95.61 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=97.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
.+.+.++|.+|+|||+|++++++. .......+.|+++... ..... .+.+.++ +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 357899999999999999999984 3333445677765311 00000 1111121 2
Q ss_pred ceEEEEeCCCCCC-cccchh-hhhhhcCC-CCCcEEEE-EeCC---------HHHHHHhCCcCeeeCCCCChHHHHHHHH
Q 003300 287 KFFLVLDDVWDGD-YKKWDP-FFSCLKNG-HHESKILI-TTRD---------RSVALQLGSIDIIPVKELGEGECCLLFK 353 (832)
Q Consensus 287 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iiv-Ttr~---------~~~~~~~~~~~~~~l~~L~~~~~~~lf~ 353 (832)
.-+||+||+|... ...|+. +...+... ..|..+|+ |++. +.+...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998742 234543 43434332 23555544 5543 4566666666789999999999999999
Q ss_pred HHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHH
Q 003300 354 QIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIG 390 (832)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 390 (832)
+.++...- .-.+++..-|++.+.|..-++..+-
T Consensus 172 ~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 172 RNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 98874432 2336677889999988766554443
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.78 E-value=2.4e-07 Score=103.59 Aligned_cols=179 Identities=11% Similarity=0.026 Sum_probs=110.9
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhh---hccCC--eeEEEEeCCCccHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEV---KRNFE--KVIWVCVSDTFEGIR 253 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 253 (832)
+..+.||++++++|...|...-. ......++.|+|.+|.|||+.++.|...... +...+ .+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35689999999999988875432 1123467889999999999999999874221 11122 367787777777888
Q ss_pred HHHHHHHHhCCCCCC-CCcHHHHHHHHHHHHc---CCceEEEEeCCCCCCcccchhhhhhhcC-CCCCcEEEE--EeCCH
Q 003300 254 VAKAIIEGLGVSASG-LSEFESLMKQIQEYIM---GKKFFLVLDDVWDGDYKKWDPFFSCLKN-GHHESKILI--TTRDR 326 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--Ttr~~ 326 (832)
++..|..++....+. ..........+...+. +...+||||+++.-....-+.|...+.+ ...+++|++ +|..-
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 899999888543322 2233344555555442 2345899999965321111224433333 234566554 34321
Q ss_pred HHH----HHhC---CcCeeeCCCCChHHHHHHHHHHhhc
Q 003300 327 SVA----LQLG---SIDIIPVKELGEGECCLLFKQIAFL 358 (832)
Q Consensus 327 ~~~----~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~ 358 (832)
+.. ..+. ....+...|.+.++-..++..++..
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 111 1111 1234778999999999999998854
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.76 E-value=8e-08 Score=101.72 Aligned_cols=193 Identities=19% Similarity=0.096 Sum_probs=104.9
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+|+|+++.++.+..++..... .....+.+.|+|++|+|||++|+.+++. ....+ .++... ......-+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 5699999999999888764321 1124567889999999999999999984 22221 122211 111112222333
Q ss_pred HHhCCCCC-CCCcH----HHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHHHhC-
Q 003300 260 EGLGVSAS-GLSEF----ESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVALQLG- 333 (832)
Q Consensus 260 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~- 333 (832)
..+..... -.++. ....+.+...+.+.+..+|+|+..+. ..+ ...+ .+.+-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~--~~~---~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAA--RSI---RLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccc--cce---eecC---CCceEEeecCCcccCCHHHHH
Confidence 33321100 00000 01122233334444444555544221 111 0011 12344556666443332221
Q ss_pred -CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHH
Q 003300 334 -SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGN 391 (832)
Q Consensus 334 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 391 (832)
....+.+++++.++..+++.+.+..... .-.++.+..|++.|+|.|-.+..+..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 1346899999999999999988754322 22356788999999999965544443
No 35
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.73 E-value=4.5e-08 Score=88.73 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=81.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhh---ccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVK---RNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY 282 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 282 (832)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+.+++.......+.+.+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999999842111 003457899988888999999999999998776666777778888888
Q ss_pred HcCCc-eEEEEeCCCCC-CcccchhhhhhhcCCCCCcEEEEEeCC
Q 003300 283 IMGKK-FFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTRD 325 (832)
Q Consensus 283 l~~k~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 325 (832)
+...+ .+||+|+++.- +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 87554 59999999654 4333444433332 566778887764
No 36
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.73 E-value=1.8e-07 Score=98.51 Aligned_cols=193 Identities=19% Similarity=0.108 Sum_probs=106.9
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+|+|+++.++++..++..... .......+.++|++|+|||+||+.+++. ....+ ..+.......... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchh-HHHHH
Confidence 4699999999999998864322 1124556889999999999999999974 22222 1222111111111 22222
Q ss_pred HHhCCCCC-CCCcH----HHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHHHhC-
Q 003300 260 EGLGVSAS-GLSEF----ESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVALQLG- 333 (832)
Q Consensus 260 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~- 333 (832)
..++.... -.++. ....+.+...+.+.+..+|+|+.... ..+.. .+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~~---~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVRL---DL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cceee---cC---CCeEEEEecCCccccCHHHHh
Confidence 33222110 00000 11223344444555555666654322 11111 11 12344555666543332211
Q ss_pred -CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHH
Q 003300 334 -SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGN 391 (832)
Q Consensus 334 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 391 (832)
....+.+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..+..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 1346789999999999999988754322 22356678999999999976654444
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.72 E-value=6.7e-08 Score=98.24 Aligned_cols=153 Identities=21% Similarity=0.255 Sum_probs=95.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHH-HHH
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQ-EYI 283 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l 283 (832)
+.+.....||++|+||||||+.++. .....| ..++-..+. ..++..+.+.-+ ...
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~g-----------------vkdlr~i~e~a~~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSG-----------------VKDLREIIEEARKNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEecccccc-----------------HHHHHHHHHHHHHHHh
Confidence 3677888999999999999999997 333333 222222221 122222333332 233
Q ss_pred cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEE--EeCCHHHH---HHhCCcCeeeCCCCChHHHHHHHHHHhhc
Q 003300 284 MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILI--TTRDRSVA---LQLGSIDIIPVKELGEGECCLLFKQIAFL 358 (832)
Q Consensus 284 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~~~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 358 (832)
.+++.+|++|.|+.-+..+-+.|...+ .+|.-|+| ||-++... ...+...++++++|+.++-.+++.+.+..
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhh
Confidence 489999999999776655555555443 34665665 66665432 12345779999999999999999984432
Q ss_pred cCCCCC--cc-chHHHHHHHHHHcCCChh
Q 003300 359 RRSFED--RE-KLEPMGRKIAHKCKGLPL 384 (832)
Q Consensus 359 ~~~~~~--~~-~~~~~~~~i~~~~~g~Pl 384 (832)
....-. .. -.++....++..++|---
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 222111 11 234566778888888643
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=3.7e-07 Score=91.57 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=102.9
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCC
Q 003300 186 VDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVS 265 (832)
Q Consensus 186 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 265 (832)
+..++.+..++.. ...+.+.|+|..|+|||+||+.+++. ........++++++.-.+. ...
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~-------- 83 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPE-------- 83 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHH--------
Confidence 4466777776543 24568999999999999999999974 2223345666665432110 001
Q ss_pred CCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcc-cc-hhhhhhhcC-CCCCcEEEEEeCCHH---------HHHHhC
Q 003300 266 ASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYK-KW-DPFFSCLKN-GHHESKILITTRDRS---------VALQLG 333 (832)
Q Consensus 266 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~---------~~~~~~ 333 (832)
+...+++ .-+||+||++..... .| +.+...+.. ...+.++|+||+... +...+.
T Consensus 84 -------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 84 -------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 1111222 348999999664322 22 334444432 123457888887432 222333
Q ss_pred CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHH
Q 003300 334 SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGN 391 (832)
Q Consensus 334 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 391 (832)
....+++.+++.++...++...+..... .-..+..+.+++.+.|.|..+..+..
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 3467999999999999998876532221 22346667888889999987766643
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=4.6e-10 Score=117.60 Aligned_cols=95 Identities=34% Similarity=0.534 Sum_probs=51.9
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
..|.|.+|.+..+|..++++..|.||+|+.|+++.+|..++.|+ |+.|.+++|+ ++.+|..++.+..|.+|+.+.| .
T Consensus 101 e~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-e 177 (722)
T KOG0532|consen 101 ESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-E 177 (722)
T ss_pred HHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-h
Confidence 33445555555555555555555555555555555555555543 5555555543 5555555555555555555555 3
Q ss_pred cccccCCCCCCCCCccCC
Q 003300 543 LKYMPVGISKLTSLRTLD 560 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~ 560 (832)
+..+|..++.+.+|+.|.
T Consensus 178 i~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 178 IQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhchHHhhhHHHHHHHH
Confidence 344555555555555554
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.62 E-value=4.7e-07 Score=98.90 Aligned_cols=177 Identities=20% Similarity=0.217 Sum_probs=106.1
Q ss_pred CceecchhhHHH---HHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 180 GEVCGRVDEKNE---LLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 180 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
.++||++..+.. +..++... ....+.++|++|+||||+|+.+++. .... |+.++......+-.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~i- 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDL- 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHH-
Confidence 468898877655 77776442 4557888999999999999999973 2222 22222211111111
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEE--EeCCHHHH---H
Q 003300 257 AIIEGLGVSASGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILI--TTRDRSVA---L 330 (832)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~~~---~ 330 (832)
..+.+..... ..+++.+|++|++|.-.....+.+...+.. |..+++ ||.+.... .
T Consensus 78 ----------------r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 78 ----------------REVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred ----------------HHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 1122222211 245788999999987655555556555433 444444 34443211 1
Q ss_pred HhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHH
Q 003300 331 QLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIG 390 (832)
Q Consensus 331 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 390 (832)
.......+.+.+++.++...++.+....... ....-..+....|++.++|.+..+..+.
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1233568999999999999999986543211 0012335667889999999987654443
No 41
>PTZ00202 tuzin; Provisional
Probab=98.62 E-value=4.3e-06 Score=86.91 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=105.0
Q ss_pred cccCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHH
Q 003300 176 LIDEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVA 255 (832)
Q Consensus 176 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 255 (832)
+.+...|+||++++.++...|...+. ...+++.|.|++|+|||||++.+..... + ..++++.. +..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHH
Confidence 34567899999999999999975443 2456999999999999999999986322 1 13333222 679999
Q ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHHHH-----c-CCceEEEEeCCCCCCcccchhhhh---hhcCCCCCcEEEEEeCCH
Q 003300 256 KAIIEGLGVSASGLSEFESLMKQIQEYI-----M-GKKFFLVLDDVWDGDYKKWDPFFS---CLKNGHHESKILITTRDR 326 (832)
Q Consensus 256 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~~~l~~---~l~~~~~gs~iivTtr~~ 326 (832)
+.++.+||.+.... -.++...|.+.+ . +++.+||+-==.- ..+..+.. .+.....-++|++----+
T Consensus 327 r~LL~ALGV~p~~~--k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evple 401 (550)
T PTZ00202 327 RSVVKALGVPNVEA--CGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHcCCCCccc--HHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehHh
Confidence 99999999843322 223334443333 2 6666666653211 22222211 233345567788766555
Q ss_pred HHHHHh---CCcCeeeCCCCChHHHHHHHHHH
Q 003300 327 SVALQL---GSIDIIPVKELGEGECCLLFKQI 355 (832)
Q Consensus 327 ~~~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 355 (832)
.+.... .....|.+.+++.++|+.+..+.
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 443221 12457899999999999888764
No 42
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.8e-06 Score=92.53 Aligned_cols=175 Identities=17% Similarity=0.174 Sum_probs=110.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc-------------------CCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 240 (832)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++....... +...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999988886532 3456789999999999999999874211100 1111
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhcCCCC
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHH 315 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 315 (832)
.++..+.. ...++.. .+.+.+ .+++-++|+|+++.-+...+..+...+.....
T Consensus 91 ~~~~~~~~---------------------~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~ 148 (363)
T PRK14961 91 IEIDAASR---------------------TKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQ 148 (363)
T ss_pred EEeccccc---------------------CCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCC
Confidence 22211111 1122211 111111 24556899999976655566677777766556
Q ss_pred CcEEEEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhH
Q 003300 316 ESKILITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 316 gs~iivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
..++|++|.+. .+... .+....+++.+++.++....+.+.+...+. .-.++.+..|++.++|.|-.
T Consensus 149 ~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 149 HIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred CeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 67777777654 33322 233568999999999999888886644321 12345677899999998854
No 43
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=1.3e-08 Score=94.84 Aligned_cols=76 Identities=30% Similarity=0.447 Sum_probs=18.9
Q ss_pred CcEEecCCCccccccccC-CCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCccc-ccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVG-KLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGI-GKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~-~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~l~~~ 540 (832)
+.|+|++|.|+.+ +.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|. +..++..+ ..+++|++|++++|
T Consensus 22 ~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 22 RELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCC
Confidence 4555666666555 2344 3556666666666666553 35556666666666654 33343333 24566666666655
Q ss_pred c
Q 003300 541 Y 541 (832)
Q Consensus 541 ~ 541 (832)
.
T Consensus 99 ~ 99 (175)
T PF14580_consen 99 K 99 (175)
T ss_dssp -
T ss_pred c
Confidence 3
No 44
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.56 E-value=1.8e-07 Score=90.67 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=32.3
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.|+||+++++++...|.... ....+.+.|+|.+|+|||+|+++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999996222 346799999999999999999999884
No 45
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2e-06 Score=95.13 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=115.3
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh-------------------ccCCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK-------------------RNFEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 240 (832)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+++..... +.|..+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 469999999999999987542 34678899999999999999998732110 011112
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH----HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCC
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQE----YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHE 316 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 316 (832)
+.++.+.. ...+++.+.+.. -..++.-++|+|+++.-+...+..+...+.....+
T Consensus 90 iEIDAAs~---------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDAASR---------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEeccccc---------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 22222111 122222222211 12356668999999776666677777777665566
Q ss_pred cEEEEEeCCHH-HHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHH
Q 003300 317 SKILITTRDRS-VALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAK 387 (832)
Q Consensus 317 s~iivTtr~~~-~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 387 (832)
.++|++|.+.. +... ......+++++++.++....+.+.+...+. ....+....|++.++|.+-.+.
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 78888776642 2212 244678999999999999998887654322 2235567889999999875443
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=1.5e-08 Score=94.44 Aligned_cols=143 Identities=24% Similarity=0.331 Sum_probs=49.4
Q ss_pred ecCCCccccccccCCCCceeEEEeCCcCccccccccc-CCCcccEEeccCccCccccCcccccccCCceeecCCccCccc
Q 003300 467 LHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLC-ELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKY 545 (832)
Q Consensus 467 L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 545 (832)
|..+.|...|. +.+...++.|+|++|.|+.+. .++ .+.+|+.|++++|. +..++ ++..+++|+.|++++|.+ +.
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I-~~ 78 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRI-SS 78 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S
T ss_pred ccccccccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCC-Cc
Confidence 44555666654 445668999999999999885 465 68999999999987 55665 488899999999999955 44
Q ss_pred ccCCC-CCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEE
Q 003300 546 MPVGI-SKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLE 619 (832)
Q Consensus 546 ~p~~l-~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 619 (832)
++.++ ..+++|++|+ +.+|.+.. ...+..|..+++|+.+++.+.+-.. ........+..+++|+.|+-.
T Consensus 79 i~~~l~~~lp~L~~L~--L~~N~I~~--l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELY--LSNNKISD--LNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -CHHHHHH-TT--EEE---TTS---S--CCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTE
T ss_pred cccchHHhCCcCCEEE--CcCCcCCC--hHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCE
Confidence 54344 3689999998 77887653 3346667777777777776643221 123344456667777777643
No 47
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=3.8e-07 Score=81.85 Aligned_cols=119 Identities=22% Similarity=0.290 Sum_probs=79.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKK 287 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 287 (832)
+++.|.|+.|+||||++++++.+.. .-..++++++.+......... + ..+.+.+...+++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 6899999999999999999997422 335678887665433211000 0 2223333333477
Q ss_pred eEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHHH------hCCcCeeeCCCCChHHH
Q 003300 288 FFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVALQ------LGSIDIIPVKELGEGEC 348 (832)
Q Consensus 288 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~------~~~~~~~~l~~L~~~~~ 348 (832)
.+|++|++... ..|......+.+..+..+|++|+........ .+....+++.||+..|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999554 5677766666665567889999997766533 12245789999988774
No 48
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.1e-06 Score=87.24 Aligned_cols=198 Identities=17% Similarity=0.148 Sum_probs=129.0
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCC--eeEEEEeCCCccHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 257 (832)
..+.+|+++++++...|...-. +....-+.|+|..|+|||+.++.+... ...... .+++|++-...+..+++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3499999999999988875433 123334899999999999999999984 433322 2799999999999999999
Q ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHHc--CCceEEEEeCCCCCCcccchhhhhhhcCCC-CCcEE--EEEeCCHHHHHHh
Q 003300 258 IIEGLGVSASGLSEFESLMKQIQEYIM--GKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-HESKI--LITTRDRSVALQL 332 (832)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~i--ivTtr~~~~~~~~ 332 (832)
|+.+++..........+..+.+.+.+. ++.+++|||+++.--...-+.+...+.... ..++| |..+.+......+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999997544444555666777777774 688999999995532111134444444322 24544 3444444333222
Q ss_pred CC-------cCeeeCCCCChHHHHHHHHHHhhccCC-CCCccchHHHHHHHHHHcCC
Q 003300 333 GS-------IDIIPVKELGEGECCLLFKQIAFLRRS-FEDREKLEPMGRKIAHKCKG 381 (832)
Q Consensus 333 ~~-------~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g 381 (832)
.. ...+...|-+.+|-...+..++-..-. ....+..-+.+..++..-+|
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 11 234788999999999999987753321 12233344444455555554
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=2.8e-06 Score=94.96 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=117.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc-------------------cCCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 240 (832)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...... .|..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 469999999999999986532 345667999999999999998887321111 11122
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH----HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCC
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY----IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHE 316 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 316 (832)
++++.+... ..+++.+.+... ..++.-++|||+++.-+...+..++..+......
T Consensus 91 iEIDAas~r---------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASNR---------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEecccccc---------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 232222111 122222222211 1244558899999877666777787777666667
Q ss_pred cEEEEEeCCHHHH-HH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh-hHHHHHHH
Q 003300 317 SKILITTRDRSVA-LQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP-LAAKVIGN 391 (832)
Q Consensus 317 s~iivTtr~~~~~-~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 391 (832)
.++|++|++..-. .. .+....+.+++++.++..+.+.+....++. .-..+....|++.++|.. -|+..+-.
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8888888765332 12 233678999999999999999887644322 123566788999999865 45555433
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=3.1e-06 Score=88.97 Aligned_cols=178 Identities=13% Similarity=0.104 Sum_probs=115.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcCh----hhhccCCeeEEEEe-CCCccHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNND----EVKRNFEKVIWVCV-SDTFEGIRV 254 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 254 (832)
.+++|-+..++.+..++.... -.....++|+.|+||||+|+.++... ....|.|...|... +.....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357898888999999886532 34677899999999999999998731 12234455555432 22222222
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHH-HH-h
Q 003300 255 AKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVA-LQ-L 332 (832)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~-~~-~ 332 (832)
.+++.+.+... -..+++-++|+|+++.-+...+..+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222111 112455677888876655567888888888877889998888765422 11 2
Q ss_pred CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHH
Q 003300 333 GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAK 387 (832)
Q Consensus 333 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 387 (832)
.....+.+.+++.++....+.+...+ ...+.+..++..++|.|..+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND--------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHH
Confidence 33578999999999998877664311 113446778899999886543
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.5e-06 Score=97.36 Aligned_cols=181 Identities=18% Similarity=0.179 Sum_probs=114.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc-------------------CCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 240 (832)
.++||-+..++.+..++.... -...+.++|..|+||||+|+.+++....... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 469999999999998886532 3445689999999999999999974211101 1111
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEE
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 319 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 319 (832)
+++...... ...+++++...+.. ...+++-++|+|+++.-+...+..|+..+.......++
T Consensus 91 iEidAas~~------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRT------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEecccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222111111 11122222222221 12467779999999877767777787777665566777
Q ss_pred EEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHH
Q 003300 320 LITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAK 387 (832)
Q Consensus 320 ivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 387 (832)
|++|.+. .+... ......|++++++.++...++.+.+..... ....+.+..|++.++|.|-.+.
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 6666543 33322 234678999999999999999886643221 2235667889999999885433
No 52
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.51 E-value=8.8e-07 Score=84.28 Aligned_cols=178 Identities=21% Similarity=0.226 Sum_probs=95.4
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
-.+|||.++-++.+.-++..... ..+....+..||++|+||||||+-++++ ....|. +++...-....++ ..+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~~dl-~~i 95 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKAGDL-AAI 95 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SCHHH-HHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhHHHH-HHH
Confidence 35799999988887665543211 1236788999999999999999999983 443432 2222110001111 111
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCC--------C-----------CCcEE
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNG--------H-----------HESKI 319 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~-----------~gs~i 319 (832)
+.. + +++-+|.+|+++.-+..+-+.+..++.++ + +-+-|
T Consensus 96 l~~---------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 96 LTN---------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HHT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred HHh---------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 111 2 23446777888665443334444443321 1 12345
Q ss_pred EEEeCCHHHHHHhCCc--CeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 320 LITTRDRSVALQLGSI--DIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 320 ivTtr~~~~~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
=.|||...+...+..- -..+++..+.+|-.++..+.+..-. -+-.++.+.+|+..+.|-|--..-+
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 5677765554443332 2457999999999999998764332 2344678899999999999654433
No 53
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=5.3e-07 Score=99.50 Aligned_cols=195 Identities=17% Similarity=0.135 Sum_probs=115.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|-+..++.+..++.... -...+.++|..|+||||+|+.+++.....+.+...+|.|.+-. .+......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 368999988888888886542 3456799999999999999999874322222222333321100 0000000000
Q ss_pred HHhCCCCCCCCcHHH---HHHHHHH-HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHHHHh-C
Q 003300 260 EGLGVSASGLSEFES---LMKQIQE-YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVALQL-G 333 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~~-~ 333 (832)
..+.. ......+. +...+.. -+.+++-++|+|+++..+...+..+...+........+|++|... .+...+ .
T Consensus 88 ~el~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 88 LEIDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred EEecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00010 01111222 2222211 123566789999997766566777777776655556666666543 332222 3
Q ss_pred CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 334 SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 334 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
....+++.+++.++....+.+.+...+. ....+....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 3568999999999999999987754332 123567789999999988544
No 54
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.50 E-value=4.8e-06 Score=92.89 Aligned_cols=198 Identities=18% Similarity=0.215 Sum_probs=131.3
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i 258 (832)
...|-|.. +...|... .+.+.+.|.-++|.|||||+-+... ....=..+.|.+++. +.++..+.+.+
T Consensus 19 ~~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 19 DNYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred ccccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHH
Confidence 34555554 44545433 3789999999999999999988874 222335699999765 56788889999
Q ss_pred HHHhCCCCCCC-------------CcHHHHHHHHHHHHc--CCceEEEEeCCCCCCcccchh-hhhhhcCCCCCcEEEEE
Q 003300 259 IEGLGVSASGL-------------SEFESLMKQIQEYIM--GKKFFLVLDDVWDGDYKKWDP-FFSCLKNGHHESKILIT 322 (832)
Q Consensus 259 ~~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivT 322 (832)
+..++.-.+.. .+...+...+...+. .++..+|+||.+-........ +...+....++-.+|+|
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 98887432222 223334444444443 568899999986654444444 44444446678889999
Q ss_pred eCCHHHHHHhC---CcCeeeC----CCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcC
Q 003300 323 TRDRSVALQLG---SIDIIPV----KELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRS 395 (832)
Q Consensus 323 tr~~~~~~~~~---~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~ 395 (832)
||+..-..... ....+++ =.|+.+|+..+|..... .+-.....+.+.+..+|-+-|+..++=.++.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 99764321100 0112222 25799999999998652 2223456789999999999999999988883
Q ss_pred C
Q 003300 396 K 396 (832)
Q Consensus 396 ~ 396 (832)
+
T Consensus 240 ~ 240 (894)
T COG2909 240 N 240 (894)
T ss_pred C
Confidence 3
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=5.2e-08 Score=106.88 Aligned_cols=175 Identities=32% Similarity=0.398 Sum_probs=114.7
Q ss_pred CCcEEecCCCccccccccCCCC-ceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLI-HLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~-~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
+..|++.+|.++.+|...+.+. +|+.|++++|.+..+|..+..+++|+.|++++|. +..+|...+.+++|+.|++++|
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N 196 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN 196 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCC
Confidence 4677888888888888777774 8888888888888887778888888888888876 6677776667888888888888
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEE
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEF 620 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 620 (832)
.+..+|..+..+..|++|. ..+|.. ...+..+.. +.++..+.+..
T Consensus 197 -~i~~l~~~~~~~~~L~~l~--~~~N~~----~~~~~~~~~----------------------------~~~l~~l~l~~ 241 (394)
T COG4886 197 -KISDLPPEIELLSALEELD--LSNNSI----IELLSSLSN----------------------------LKNLSGLELSN 241 (394)
T ss_pred -ccccCchhhhhhhhhhhhh--hcCCcc----eecchhhhh----------------------------cccccccccCC
Confidence 4566776665666677777 444421 111111222 22222233322
Q ss_pred ecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcC
Q 003300 621 GRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHL 688 (832)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l 688 (832)
|.... ....+..+++++.|+++++....++. ++.+.+|+.|+++++.....+
T Consensus 242 n~~~~---------------~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 242 NKLED---------------LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ceeee---------------ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 22110 01233445567777777777777666 778888888888888654433
No 56
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=1.1e-06 Score=81.59 Aligned_cols=125 Identities=20% Similarity=0.138 Sum_probs=73.7
Q ss_pred ecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHh
Q 003300 183 CGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGL 262 (832)
Q Consensus 183 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 262 (832)
+|++..++++...+... ..+.+.|+|.+|+|||++++.+++.. ...-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHh--hcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888889998888653 34678999999999999999999842 2222456777665443322211111100
Q ss_pred CCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCC------CCCcEEEEEeCCHH
Q 003300 263 GVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNG------HHESKILITTRDRS 327 (832)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 327 (832)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999753222223333333332 35778888887643
No 57
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=9.3e-09 Score=108.01 Aligned_cols=99 Identities=25% Similarity=0.394 Sum_probs=63.9
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
.+|+|+.|++..+|..++.|+ |+.|-+++|+++.+|..++.+..|..||.+.|. +..+|..++.+.+|+.|.+..| .
T Consensus 124 t~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn-~ 200 (722)
T KOG0532|consen 124 TFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN-H 200 (722)
T ss_pred HHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhh-h
Confidence 566777777777777766554 677777777777777777766777777777655 5566666777777777777766 4
Q ss_pred cccccCCCCCCCCCccCCceeeCCc
Q 003300 543 LKYMPVGISKLTSLRTLDKFVVGGG 567 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~~~~~~~~ 567 (832)
+..+|..+.. -.|..|+ .+.|.
T Consensus 201 l~~lp~El~~-LpLi~lD--fScNk 222 (722)
T KOG0532|consen 201 LEDLPEELCS-LPLIRLD--FSCNK 222 (722)
T ss_pred hhhCCHHHhC-Cceeeee--cccCc
Confidence 4455665552 3455555 44444
No 58
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.46 E-value=5.1e-05 Score=86.55 Aligned_cols=203 Identities=19% Similarity=0.152 Sum_probs=121.9
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC---CeeEEEEeCC---CccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSD---TFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~---~~~~~~ 253 (832)
++++|++..++.+.+.+... ....+.|+|.+|+||||+|+.+++.......+ ...-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999999888777432 34579999999999999999998753322222 1233443321 112222
Q ss_pred HHH---------------HHHHHhCCC------------------CCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc
Q 003300 254 VAK---------------AIIEGLGVS------------------ASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY 300 (832)
Q Consensus 254 ~~~---------------~i~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 300 (832)
+.. ..+...+.. ..+..+ ...+..+.+.++++++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 111 111221211 001111 2246778888888999999888887776
Q ss_pred ccchhhhhhhcCCCCCcEEEE--EeCCHHH-HHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHH
Q 003300 301 KKWDPFFSCLKNGHHESKILI--TTRDRSV-ALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIA 376 (832)
Q Consensus 301 ~~~~~l~~~l~~~~~gs~iiv--Ttr~~~~-~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~ 376 (832)
..|+.+...+....+..-|++ ||++... ... ......+.+.+++.++.+.++.+.+..... .-.+++...|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v----~ls~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV----HLAAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHH
Confidence 778888776666555544554 5554321 111 122457889999999999999997643221 11244555666
Q ss_pred HHcCCChhHHHHHHHHh
Q 003300 377 HKCKGLPLAAKVIGNLL 393 (832)
Q Consensus 377 ~~~~g~Plai~~~~~~l 393 (832)
+.+..-+.|+..++.+.
T Consensus 383 ~ys~~gRraln~L~~~~ 399 (615)
T TIGR02903 383 RYTIEGRKAVNILADVY 399 (615)
T ss_pred HCCCcHHHHHHHHHHHH
Confidence 66655567777665553
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.5e-06 Score=92.08 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=113.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh------------------------c
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK------------------------R 235 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------------~ 235 (832)
.++||-+..++.|..++.... -...+.++|..|+||||+|+.+++...-. +
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 469999999999999987542 34567899999999999999988732110 0
Q ss_pred cCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH----HcCCceEEEEeCCCCCCcccchhhhhhhc
Q 003300 236 NFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY----IMGKKFFLVLDDVWDGDYKKWDPFFSCLK 311 (832)
Q Consensus 236 ~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 311 (832)
.|..+++++.+. ...++++.+.+... ..++.-++|+|+++.-+...+..+...+.
T Consensus 91 ~hpDviEIdAas---------------------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 91 RFVDYIEMDAAS---------------------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCCcceEecccc---------------------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 011112222111 12233333322221 13566689999998776667777777776
Q ss_pred CCCCCcEEEEEeCC-HHHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHH
Q 003300 312 NGHHESKILITTRD-RSVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAK 387 (832)
Q Consensus 312 ~~~~gs~iivTtr~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 387 (832)
......++|++|.+ ..+... .+....+.++.++.++..+.+.+.+...+. ....+....|++.++|.|....
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi----~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI----AHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 65556666666554 344322 233678999999999999988877643321 1224556789999999986443
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.45 E-value=6.5e-06 Score=88.24 Aligned_cols=196 Identities=16% Similarity=0.110 Sum_probs=111.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCC-eeEEEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 258 (832)
.+++|++..++.+..++... ..+.+.++|..|+||||+|+.+++... ...+. ..+.+++++-... ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 46899999999999988643 334578999999999999999987421 11221 2344444321100 00000
Q ss_pred HH------HhCCC-CCCCCcHHHHHHHHHHH---H--cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH
Q 003300 259 IE------GLGVS-ASGLSEFESLMKQIQEY---I--MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR 326 (832)
Q Consensus 259 ~~------~l~~~-~~~~~~~~~~~~~l~~~---l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 326 (832)
.. .++.. .......+.....+... . .+.+-+||+||+..-.......+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00 00000 00011112222222221 1 2345589999996544333444555554444557788877543
Q ss_pred H-HHHHh-CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHH
Q 003300 327 S-VALQL-GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 327 ~-~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 388 (832)
. +...+ .....+.+.+++.++...++.+.+...+. .-..+....+++.++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV----DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 22222 23457899999999999999887644332 12356778899999987655443
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1e-05 Score=89.00 Aligned_cols=192 Identities=16% Similarity=0.139 Sum_probs=113.9
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCC-eeEEEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 258 (832)
.+++|-+..++.+...+.... -...+.++|..|+||||+|+.+++......... ...+..+.... ....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~----~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT----NCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh----HHHHH
Confidence 468999998988888775432 346788999999999999999987421111100 00000000000 00001
Q ss_pred HH-------HhCCCCCCCCcHHHHHHHHHH----HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEE-EeCCH
Q 003300 259 IE-------GLGVSASGLSEFESLMKQIQE----YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILI-TTRDR 326 (832)
Q Consensus 259 ~~-------~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~ 326 (832)
.. +++. ......+++...+.. -+.+++-++|+|+++.-+...+..+...+......+.+|+ ||+..
T Consensus 92 ~~~~h~Dv~eida--as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~ 169 (507)
T PRK06645 92 NNHNHPDIIEIDA--ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169 (507)
T ss_pred hcCCCCcEEEeec--cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence 00 0000 011122222222221 1235677899999988766778888877776556666665 44444
Q ss_pred HHHHHh-CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 327 SVALQL-GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 327 ~~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
.+...+ .....+++.+++.++....+.+.+...+. ....+....|++.++|.+--+
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 444333 33567999999999999999988754332 123456678999999987443
No 62
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=3.4e-07 Score=69.80 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=30.5
Q ss_pred ceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 484 HLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 484 ~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
+|++|++++|.++.+|. .|.++++|++|++++|.....-|..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555542 4455555666666555433223334555666666665555
No 63
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=9.9e-06 Score=89.66 Aligned_cols=185 Identities=19% Similarity=0.207 Sum_probs=115.6
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhh-------------------hccCCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEV-------------------KRNFEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~f~~~ 240 (832)
.+++|-+..++.+...+.... ....+.++|+.|+||||+|+.+++...- .+.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999998886532 3456789999999999999999862110 0112223
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEE
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 319 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 319 (832)
+++.......+ .+.+.+.+.+... ..+++-++|+|+++.-+...+..+...+......+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 33322211111 1222222222211 2356679999999776666677788877766566666
Q ss_pred EEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh-hHHHHHHH
Q 003300 320 LITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP-LAAKVIGN 391 (832)
Q Consensus 320 ivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 391 (832)
|++|.+. .+... ......+++++++.++....+.+.+...+. ....+....|++.++|.+ .|+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6555443 33322 234678999999999988888876543221 223556678999999976 45554443
No 64
>PRK08727 hypothetical protein; Validated
Probab=98.40 E-value=1.4e-05 Score=79.73 Aligned_cols=148 Identities=14% Similarity=0.081 Sum_probs=91.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKK 287 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 287 (832)
..+.|+|..|+|||.|++++++. .......+.|+++.+ ....+. +.+. .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcC
Confidence 45999999999999999999884 333334567776432 111110 1111 11 234
Q ss_pred eEEEEeCCCCCC-cccchh-hhhhhcC-CCCCcEEEEEeCCH---------HHHHHhCCcCeeeCCCCChHHHHHHHHHH
Q 003300 288 FFLVLDDVWDGD-YKKWDP-FFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELGEGECCLLFKQI 355 (832)
Q Consensus 288 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 355 (832)
-+||+||+.... ...|.. +...+.. ..+|..||+|++.. ++...+.....+++++++.++-..++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999995432 122332 3332222 22466799999842 33333444568999999999999999987
Q ss_pred hhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 356 AFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
+...+- .-.++....|++.+.|-.-.+
T Consensus 175 a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 754321 233567788899998766554
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=3.6e-08 Score=97.87 Aligned_cols=173 Identities=18% Similarity=0.150 Sum_probs=80.1
Q ss_pred CCCCceeEEEeCCcCcc-----cccccccCCCcccEEeccCccCcc----ccCc-------ccccccCCceeecCCccCc
Q 003300 480 GKLIHLRYLNLSELGIE-----RLPKTLCELYNLQKLDIRRCRNLK----ELPA-------GIGKLKNMRSLLNGETYSL 543 (832)
Q Consensus 480 ~~l~~L~~L~Ls~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~----~lp~-------~l~~l~~L~~L~l~~~~~~ 543 (832)
-.+..+.+++||+|.+. .+-+.+.+.++|+..++++ -+.+ ++|+ .+..+++|+.|+||.|-..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34455566666666543 2333444555566665554 1111 2222 2334556666666666433
Q ss_pred ccccCC----CCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEE
Q 003300 544 KYMPVG----ISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLE 619 (832)
Q Consensus 544 ~~~p~~----l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 619 (832)
...+.. +..++.|++|. +.++.+.......+.. .|..|. ........++|+.+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~--L~N~Glg~~ag~~l~~--al~~l~----------------~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELY--LNNCGLGPEAGGRLGR--ALFELA----------------VNKKAASKPKLRVFICG 165 (382)
T ss_pred ccchHHHHHHHHhccCHHHHh--hhcCCCChhHHHHHHH--HHHHHH----------------HHhccCCCcceEEEEee
Confidence 222222 34566667666 4444432211111100 010000 01123344566666666
Q ss_pred EecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCC-----CCchhccccCCcEEEEeccC
Q 003300 620 FGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNI-----FPKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~l~~l~~L~~L~L~~~~ 683 (832)
.|+....+ ...+-..+..++.|+.+.+..|++.. +-..+..+++|+.|+|.+|.
T Consensus 166 rNrlen~g----------a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 166 RNRLENGG----------ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cccccccc----------HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 66643322 12223344455666666666665532 11223466777777777774
No 66
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=5.4e-08 Score=94.11 Aligned_cols=101 Identities=33% Similarity=0.374 Sum_probs=75.9
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
..|||++|.|+.+.+++.-++.++.|++|+|.|..+-. +..|++|+.|||++|. +..+-..-.+|.|.+.|.+.+| .
T Consensus 287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N-~ 363 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQN-K 363 (490)
T ss_pred hhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhh-h
Confidence 67888899888888888888889999999998887754 7888889999998876 4444443456778888888888 3
Q ss_pred cccccCCCCCCCCCccCCceeeCCccC
Q 003300 543 LKYMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
++.+ +++++|-+|..|+ ..+|++.
T Consensus 364 iE~L-SGL~KLYSLvnLD--l~~N~Ie 387 (490)
T KOG1259|consen 364 IETL-SGLRKLYSLVNLD--LSSNQIE 387 (490)
T ss_pred Hhhh-hhhHhhhhheecc--ccccchh
Confidence 4443 4577777788777 6666543
No 67
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.38 E-value=1.1e-05 Score=85.60 Aligned_cols=180 Identities=14% Similarity=0.057 Sum_probs=106.7
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe--CCCccHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SDTFEGIRVAKA 257 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 257 (832)
.+++|+++.++.+..++... ..+.+.++|..|+||||+|+.+++... ...+. ..++.+ +...... ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 46899999999999988653 334579999999999999999987421 11121 122222 2221111 1111
Q ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH-HHHH-hCCc
Q 003300 258 IIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS-VALQ-LGSI 335 (832)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~-~~~~ 335 (832)
.+.++....+ .....+-++++|+++.-.......+...+......+++|+++.... +... ....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 0012355899999865443445556666655455567777775321 1111 1224
Q ss_pred CeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 336 DIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 336 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
..+++.+++.++...++...+...+. .-..+....+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 46899999999998888887754322 123567788999999987653
No 68
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=6.8e-06 Score=92.38 Aligned_cols=191 Identities=17% Similarity=0.178 Sum_probs=113.6
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.++||-+..++.+...+.... -...+.++|..|+||||+|+.+++...-...+. ...+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 469999999999988886532 235578999999999999999987421111000 00000001111111
Q ss_pred HH-------hCCCC-CCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHH
Q 003300 260 EG-------LGVSA-SGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVA 329 (832)
Q Consensus 260 ~~-------l~~~~-~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~ 329 (832)
.. +.... ....+..++.+.+.. -..+++-++|+|+++.-+...+..+...+.......++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 00000 011122222222221 124667799999998777667777877776655566666666553 333
Q ss_pred HH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 330 LQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 330 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
.. ......|.+++++.++....+.+.....+. ....+....|++.++|.+-.+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 22 234678999999999999998886643321 122456678999999988643
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=1.9e-07 Score=102.44 Aligned_cols=188 Identities=25% Similarity=0.351 Sum_probs=131.3
Q ss_pred cEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCC-cccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 464 PFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELY-NLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 464 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
.+++..+.+...+..+..+..+..|++.+|.+..+|.....+. +|+.|++++|. +..+|..++.+++|+.|++++| .
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-D 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-h
Confidence 4677777775555667777899999999999999999888885 99999999976 7778777999999999999999 5
Q ss_pred cccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEec
Q 003300 543 LKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGR 622 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 622 (832)
+..+|...+.+++|+.|+ ..++.+..... .. .....|+.|.++.|.
T Consensus 175 l~~l~~~~~~~~~L~~L~--ls~N~i~~l~~-~~-------------------------------~~~~~L~~l~~~~N~ 220 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLD--LSGNKISDLPP-EI-------------------------------ELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhhhhhhhhee--ccCCccccCch-hh-------------------------------hhhhhhhhhhhcCCc
Confidence 566777666888888888 66665322110 00 112335555555553
Q ss_pred CCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCcc-ccceec
Q 003300 623 VVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLEL 701 (832)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lp-L~~l~l 701 (832)
.. .....+....++..|.+.++....++..+..+++|++|++++|. +.+++.++.+. ++.+++
T Consensus 221 ~~---------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~ 284 (394)
T COG4886 221 II---------------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDL 284 (394)
T ss_pred ce---------------ecchhhhhcccccccccCCceeeeccchhccccccceecccccc-ccccccccccCccCEEec
Confidence 11 11223344566666767777766668888899999999999994 45555455544 444444
Q ss_pred cc
Q 003300 702 RN 703 (832)
Q Consensus 702 ~~ 703 (832)
.+
T Consensus 285 s~ 286 (394)
T COG4886 285 SG 286 (394)
T ss_pred cC
Confidence 43
No 70
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=3.2e-07 Score=105.32 Aligned_cols=98 Identities=23% Similarity=0.355 Sum_probs=82.3
Q ss_pred CcEEecCCCcc-ccccccCCCCceeEEEeCCcCcc-cccccccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIR-EIPKNVGKLIHLRYLNLSELGIE-RLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
..|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..+++|++|++|++++|
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 45788888876 58888999999999999999987 88888999999999999999888889999999999999999999
Q ss_pred cCcccccCCCCCC-CCCccCC
Q 003300 541 YSLKYMPVGISKL-TSLRTLD 560 (832)
Q Consensus 541 ~~~~~~p~~l~~L-~~L~~L~ 560 (832)
.....+|..++.+ .++..++
T Consensus 501 ~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 501 SLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred cccccCChHHhhccccCceEE
Confidence 8877888877653 3344444
No 71
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.4e-05 Score=87.14 Aligned_cols=180 Identities=18% Similarity=0.154 Sum_probs=114.9
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChh------------------h-hccCCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDE------------------V-KRNFEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------------------~-~~~f~~~ 240 (832)
.++||-+..++.+...+.... -...+.++|..|+||||+|+.+++... + .+.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999988888888776432 345788999999999999998886210 0 0112234
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEE
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKIL 320 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 320 (832)
+.++.+....+++ .+.+++..... -..+++-++|+|+++.-+...+..+...+....+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 4444433333222 12222221110 012456689999997766666777877777666677777
Q ss_pred EEeCC-HHHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhH
Q 003300 321 ITTRD-RSVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 321 vTtr~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
++|.. ..+... ......+.+.+++.++....+.+.+...+. .-.++....|++.++|.+-.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 66643 344333 234678999999999999999887754332 22356677899999998753
No 72
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.37 E-value=1.2e-05 Score=80.51 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=90.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
..+.+.|+|..|+|||+||+.+++... ... ..+++++....... + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~~----------~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLLA----------F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHHH----------H------------------hhc-c
Confidence 446789999999999999999998421 122 24555554331100 0 011 2
Q ss_pred CceEEEEeCCCCCCcccchhhhhhhcC-CCCCc-EEEEEeCCHHHH--------HHhCCcCeeeCCCCChHHHHHHHHHH
Q 003300 286 KKFFLVLDDVWDGDYKKWDPFFSCLKN-GHHES-KILITTRDRSVA--------LQLGSIDIIPVKELGEGECCLLFKQI 355 (832)
Q Consensus 286 k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~iivTtr~~~~~--------~~~~~~~~~~l~~L~~~~~~~lf~~~ 355 (832)
..-+||+||+...+...-+.+...+.. ...+. .||+|++..... ..+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 234789999965433232334444432 12344 366666643221 12233468999999998877777665
Q ss_pred hhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHh
Q 003300 356 AFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLL 393 (832)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 393 (832)
+...+ ..-.++....+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 43222 12235677888899999998877766555
No 73
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.36 E-value=9.6e-08 Score=92.40 Aligned_cols=134 Identities=21% Similarity=0.213 Sum_probs=95.8
Q ss_pred CCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCC
Q 003300 610 QQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP 689 (832)
Q Consensus 610 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~ 689 (832)
.+.|+.+++++|.++ .+.++....+.++.|+++.|....+.. +..+++|+.|+|++|.
T Consensus 283 Wq~LtelDLS~N~I~---------------~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~------ 340 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT---------------QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL------ 340 (490)
T ss_pred Hhhhhhccccccchh---------------hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch------
Confidence 357888899988643 344566677899999999998876544 7889999999999995
Q ss_pred CCCCccccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCc
Q 003300 690 PLGKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPR 769 (832)
Q Consensus 690 ~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 769 (832)
+..+.-....|.+.+.|.+..|.+... +.+..+-+|.+|++++. +++... ....++++|+
T Consensus 341 -Ls~~~Gwh~KLGNIKtL~La~N~iE~L--------------SGL~KLYSLvnLDl~~N-~Ie~ld----eV~~IG~LPC 400 (490)
T KOG1259|consen 341 -LAECVGWHLKLGNIKTLKLAQNKIETL--------------SGLRKLYSLVNLDLSSN-QIEELD----EVNHIGNLPC 400 (490)
T ss_pred -hHhhhhhHhhhcCEeeeehhhhhHhhh--------------hhhHhhhhheecccccc-chhhHH----HhcccccccH
Confidence 222333345667788888888876543 22567778888877763 333322 2345789999
Q ss_pred cceeeecccccccCCCC
Q 003300 770 LSSLEVRSCNKLKALPD 786 (832)
Q Consensus 770 L~~L~l~~c~~l~~lp~ 786 (832)
|+.+.+.+|| +..+|.
T Consensus 401 LE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 401 LETLRLTGNP-LAGSVD 416 (490)
T ss_pred HHHHhhcCCC-ccccch
Confidence 9999999999 766664
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=2.8e-06 Score=91.35 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=113.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|-+..+..+..++.... -...+.++|..|+||||+|+.+++...-. .... ...+....+-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCC
Confidence 468999999999988886542 23468899999999999999998732111 1000 001111111111111110
Q ss_pred HH---hCC-CCCCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCC-HHHHHH-h
Q 003300 260 EG---LGV-SASGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRD-RSVALQ-L 332 (832)
Q Consensus 260 ~~---l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~~~-~ 332 (832)
.. +.. ...+..+..++.+.+... ..++.-++|+|+++.-+...+..+...+........+|++|.. ..+... .
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00 000 001112223333333221 2356669999999877767777777777554445555555543 344322 2
Q ss_pred CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhH
Q 003300 333 GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 333 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
.....|.+.+++.++....+.+.+...+. .-..+....|++.++|.+.-
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHH
Confidence 34578999999999998888887654322 22356778999999999843
No 75
>PLN03025 replication factor C subunit; Provisional
Probab=98.35 E-value=1.2e-05 Score=84.78 Aligned_cols=181 Identities=13% Similarity=0.075 Sum_probs=106.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCC-eeEEEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 258 (832)
.+++|.++.++.+..++... ..+.+.++|.+|+||||+|+.+++.. ....|. .++-++.++..... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 46889988888888877543 34457799999999999999998731 122232 12222222222211 12222
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHHHH-hCCcC
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVALQ-LGSID 336 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~-~~~~~ 336 (832)
+......... .-.++.-++|+|+++.-.......+...+......+++|+++... .+... .....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2111100000 001346689999997655444455555554444567777777543 22111 12245
Q ss_pred eeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhH
Q 003300 337 IIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 337 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
.++++++++++....+...+...+. .-..+....|++.++|-.-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi----~i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV----PYVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 7999999999999888887754332 12245678899999987643
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=2.4e-05 Score=85.76 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=117.3
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc-------------------CCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 240 (832)
.+++|.+..++.+...+.... -...+.++|++|+||||+|+.+++....... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 469999888888877775431 2356889999999999999999874211100 1112
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEE
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 319 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 319 (832)
+.++.+...... +...+.+.... -..+++-++|+|+++.-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGID------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHH------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 222222111111 11111111111 12356679999999665444556666666554444555
Q ss_pred EEEeCC-HHHHHHh-CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCC-ChhHHHHHHHHhcC-
Q 003300 320 LITTRD-RSVALQL-GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKG-LPLAAKVIGNLLRS- 395 (832)
Q Consensus 320 ivTtr~-~~~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~l~~- 395 (832)
|++|.+ ..+...+ .....+++.+++.++....+.+.+...+. .-.++....|++.++| ++.|+..+-.+...
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 555544 3333332 33568999999999998888887753322 2235667788887865 46777777654432
Q ss_pred --CCCHHHHHHHHh
Q 003300 396 --KSTVKEWQRILE 407 (832)
Q Consensus 396 --~~~~~~w~~~~~ 407 (832)
+-+.+....++.
T Consensus 227 ~~~It~e~V~~~l~ 240 (472)
T PRK14962 227 EGKITLETVHEALG 240 (472)
T ss_pred CCCCCHHHHHHHHc
Confidence 225566666554
No 77
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=89.47 Aligned_cols=181 Identities=14% Similarity=0.135 Sum_probs=112.9
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh-------------------ccCCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK-------------------RNFEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 240 (832)
.++||-+..++.+..++.... -...+.++|..|+||||+|+.+++..--. +.|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 469999999999999996542 34567899999999999999988732111 112223
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEE
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKIL 320 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 320 (832)
+.++.+....++++ +++++.+... -..++.-++|+|+++.-+...+..+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 33333222222221 1222221110 113556689999998766667777777776665667777
Q ss_pred EEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 321 ITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 321 vTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
++|.+. .+... ......+++++++.++....+.+.+-..+. ....+....|++.++|.+..+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHH
Confidence 766543 33222 233567899999999988777776543322 122455678999999988543
No 78
>PRK04195 replication factor C large subunit; Provisional
Probab=98.33 E-value=1.5e-05 Score=88.97 Aligned_cols=181 Identities=21% Similarity=0.187 Sum_probs=110.3
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.++.++++..|+..... ....+.+.|+|++|+||||+|+.++++. .|+ ++-++.++..+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHH
Confidence 4699999999999999976432 1236789999999999999999999842 132 3334444432222 222222
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc----ccchhhhhhhcCCCCCcEEEEEeCCHH-HHH-H-h
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY----KKWDPFFSCLKNGHHESKILITTRDRS-VAL-Q-L 332 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~-~-~ 332 (832)
....... .....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... . -
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2211100 00113677999999966432 224445444442 2344666665421 111 1 1
Q ss_pred CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHH
Q 003300 333 GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 333 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 388 (832)
.....+.+.+++.++....+.+.+...+. .-..+....|++.++|-.-.+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi----~i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGI----ECDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 23567999999999998888887654332 12246778999999997655443
No 79
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.3e-05 Score=89.62 Aligned_cols=187 Identities=13% Similarity=0.166 Sum_probs=113.7
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc-------------------cCCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 240 (832)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+++...... .|..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 469999999999999987542 346789999999999999999887311110 01111
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEE
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 319 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 319 (832)
+.++.+....+ .+++.++..... -..+++-++|+|+++.-+......+...+.......++
T Consensus 91 lEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 22221111111 112222221111 12356678999999665544566666666654456677
Q ss_pred EEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH-HHHHHHh
Q 003300 320 LITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA-KVIGNLL 393 (832)
Q Consensus 320 ivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai-~~~~~~l 393 (832)
|++|.+. .+... .+....+.+.+++.++....+.+.+...+. .-..+....|++.++|.+.-+ ..+-.++
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAlnLLDqai 225 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALSLLDQAI 225 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777543 22211 233567899999999999999887654332 223456789999999988543 3343333
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.32 E-value=3e-05 Score=83.74 Aligned_cols=182 Identities=13% Similarity=0.125 Sum_probs=111.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh--------------------ccCCe
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK--------------------RNFEK 239 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~ 239 (832)
.+++|.+..++.+.+++.... -...+.++|..|+||||+|+.++....-. .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 468999999999999886532 34578899999999999998887631100 0111
Q ss_pred eEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcE
Q 003300 240 VIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESK 318 (832)
Q Consensus 240 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 318 (832)
.+++......... +..++.+.+.. -..+++-++|+|++..-+......+...+......+.
T Consensus 88 ~~~~~~~~~~~~~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 VIEIDAASNNGVD------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred EEEeeccccCCHH------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 2222221111111 11112221111 0124556889999855444456667666655555667
Q ss_pred EEEEeCCHH-HHHHh-CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 319 ILITTRDRS-VALQL-GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 319 iivTtr~~~-~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
+|++|.+.. +...+ .....+++.+++.++...++...+...+. .-.++.+..+++.++|.|..+...
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI----KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCChHHHHHH
Confidence 777776544 22222 23467899999999999888887643322 122467788999999998655444
No 81
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.32 E-value=9.7e-07 Score=87.95 Aligned_cols=90 Identities=19% Similarity=0.087 Sum_probs=62.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC--ccHHHHHHHHHHHhCCCCCCCCcHH------HHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FEGIRVAKAIIEGLGVSASGLSEFE------SLMK 277 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 277 (832)
....++|+|.+|+|||||++.++++.... +|+..+|+.+.++ .++.++++.+...+-....+..... ...+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999974443 8999999997766 7899999999333322222211111 2222
Q ss_pred HHHHH-HcCCceEEEEeCCC
Q 003300 278 QIQEY-IMGKKFFLVLDDVW 296 (832)
Q Consensus 278 ~l~~~-l~~k~~LlVlDdv~ 296 (832)
....+ -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 24899999999993
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.6e-05 Score=89.32 Aligned_cols=196 Identities=14% Similarity=0.147 Sum_probs=112.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC--CeeEEEEeCCCccHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 257 (832)
.++||-+..++.+..++.... -...+.++|..|+||||+|+.+++...-.... .....-.++. -..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~----C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV----CQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc----cHHHHH
Confidence 468998888888988887542 34667899999999999999987531110000 0000000000 011111
Q ss_pred HHHH-----hCCCCCCCCcHHHHHHHHHHH----HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCC-HH
Q 003300 258 IIEG-----LGVSASGLSEFESLMKQIQEY----IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRD-RS 327 (832)
Q Consensus 258 i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 327 (832)
|... +.........++++.+.+... ..++.-++|+|+++.-+...+..+...+.......++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1000 000000111222322222211 1244558899999887766777777777665556677766644 33
Q ss_pred HHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHH
Q 003300 328 VALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 328 ~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 388 (832)
+... ......+++++++.++....+.+.+...+. ....+....|++.++|.+--+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3322 344678999999999999888887644322 12245678899999998754433
No 83
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=3e-05 Score=80.72 Aligned_cols=180 Identities=12% Similarity=0.086 Sum_probs=118.4
Q ss_pred cCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 178 DEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 178 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
.+..++||+.+++.+.+++...-+ ....+.+-|.|.+|.|||.+...++.+......-..++++.+..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 345699999999999999976543 346778999999999999999999985332222234577777766777888888
Q ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHHcCC--ceEEEEeCCCCCCcccchhhhhhhcC-CCCCcEEEEEeCCH--HHHH--
Q 003300 258 IIEGLGVSASGLSEFESLMKQIQEYIMGK--KFFLVLDDVWDGDYKKWDPFFSCLKN-GHHESKILITTRDR--SVAL-- 330 (832)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~--~~~~-- 330 (832)
|...+...........+....+.++.+.. .+++|+|..+.-....-+.+...|.| .-+++|+|+.---. +...
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88877222112222244555666666533 58999999865333334445555555 34677776654311 1111
Q ss_pred --HhC-----CcCeeeCCCCChHHHHHHHHHHhhcc
Q 003300 331 --QLG-----SIDIIPVKELGEGECCLLFKQIAFLR 359 (832)
Q Consensus 331 --~~~-----~~~~~~l~~L~~~~~~~lf~~~~~~~ 359 (832)
.+. ....+...|-+.++-.+++....-..
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 111 14578889999999999999887543
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=2.2e-05 Score=86.98 Aligned_cols=196 Identities=17% Similarity=0.176 Sum_probs=112.4
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.+..++.+...+.... -.+.+.++|+.|+||||+|+.+++...-.. |... ..+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHH
Confidence 468999999999999886532 346788999999999999999987311101 1110 0011111111111
Q ss_pred HHhCC-----CCCCCCcHHH---HHHHHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeC-CHHHH
Q 003300 260 EGLGV-----SASGLSEFES---LMKQIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTR-DRSVA 329 (832)
Q Consensus 260 ~~l~~-----~~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~~~ 329 (832)
..... ........++ +...+... ..+++-++|+|+++.-+...+..+...+........+|++|. ...+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 11000 0000111222 22222111 123444799999976655667777777765555566665554 33443
Q ss_pred HH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh-HHHHHHH
Q 003300 330 LQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL-AAKVIGN 391 (832)
Q Consensus 330 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 391 (832)
.. ......+++.+++.++....+...+...+. .-..+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 234568999999999999888886643321 1224567889999999664 5444444
No 85
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.4e-07 Score=96.36 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=46.5
Q ss_pred ccccccccCCCCceeEEEeCCcCccccc--ccccCCCcccEEeccCccCccc--cCcccccccCCceeecCCcc
Q 003300 472 IREIPKNVGKLIHLRYLNLSELGIERLP--KTLCELYNLQKLDIRRCRNLKE--LPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 472 l~~lp~~l~~l~~L~~L~Ls~~~i~~lp--~~~~~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~l~~~~ 541 (832)
+..+...-+++..|+...|.++.+...+ .....|++++.|||++|-+..- +-.-...|++|+.|+++.|.
T Consensus 110 fDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 110 FDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred HHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 3344444567888999999998887665 3567788888888888643221 22224567777777777763
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.28 E-value=8e-06 Score=93.89 Aligned_cols=172 Identities=17% Similarity=0.213 Sum_probs=98.6
Q ss_pred CceecchhhHH---HHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 180 GEVCGRVDEKN---ELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 180 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
.+|+|.+..+. .+...+... ....+.++|++|+||||+|+.+++. ...+|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh-----
Confidence 46899888774 455555432 4567889999999999999999973 333331 111110 000
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHHH--cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEE--eCCHH--HHH
Q 003300 257 AIIEGLGVSASGLSEFESLMKQIQEYI--MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILIT--TRDRS--VAL 330 (832)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--~~~ 330 (832)
.+.........+.+ .+++.+||+||++.-+...++.+...+. .|+.++++ |.+.. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 11112222222222 2467799999997655445555554433 34545543 34432 211
Q ss_pred H-hCCcCeeeCCCCChHHHHHHHHHHhhccCC---CCCccchHHHHHHHHHHcCCChh
Q 003300 331 Q-LGSIDIIPVKELGEGECCLLFKQIAFLRRS---FEDREKLEPMGRKIAHKCKGLPL 384 (832)
Q Consensus 331 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Pl 384 (832)
. ......+.+++++.++...++.+.+..... .....-.++....|++.+.|.--
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1 223467999999999999999886531000 01112235667888888888643
No 87
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.27 E-value=1.5e-05 Score=79.76 Aligned_cols=157 Identities=19% Similarity=0.178 Sum_probs=96.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
+....+.+||.+|+||||||+.+....+.. ...||..+-.....+-.+.|+++-. =...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHHHHHHHHH---------------HHHhhh
Confidence 367889999999999999999999853222 2556666544433333344443321 112345
Q ss_pred CCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEE--EeCCHHHHH---HhCCcCeeeCCCCChHHHHHHHHHHhh--
Q 003300 285 GKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILI--TTRDRSVAL---QLGSIDIIPVKELGEGECCLLFKQIAF-- 357 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~~~~---~~~~~~~~~l~~L~~~~~~~lf~~~~~-- 357 (832)
++|.+|.+|.++.-+..+-+.|. |.-.+|.-++| ||-++.... .+....++.+++|..++...++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~fL---P~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTFL---PHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhccc---ceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 78899999999765444444443 33345665555 777765432 345578999999999999888887432
Q ss_pred -ccCCC---CCcc---chHHHHHHHHHHcCCCh
Q 003300 358 -LRRSF---EDRE---KLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 358 -~~~~~---~~~~---~~~~~~~~i~~~~~g~P 383 (832)
..+.. -+.+ -...+..-++..|.|-.
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 11111 1111 12345566777788864
No 88
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.8e-05 Score=82.02 Aligned_cols=196 Identities=13% Similarity=0.134 Sum_probs=116.9
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc--cCCeeEEEEeCCCccHHHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR--NFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~ 256 (832)
...++|-++..+.+...+.... ....+.|+|..|+||||+|..+++..--.. .+.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 3569999999999999886542 355788999999999999998887311100 011110 011111111223
Q ss_pred HHHHH-------hCCC--C-----CCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCc
Q 003300 257 AIIEG-------LGVS--A-----SGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHES 317 (832)
Q Consensus 257 ~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 317 (832)
.+... +..+ . ...-.++++. .+.+++ .+++-++|+|+++.-+......+...+.......
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33222 1100 0 0112234433 344444 3567799999997766666666777776644455
Q ss_pred EEEEEeCCH-HHHHHh-CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 318 KILITTRDR-SVALQL-GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 318 ~iivTtr~~-~~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
.+|++|... .+...+ +....+.+.+++.++...++.+.... .. -..+.+..+++.++|.|.....+
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-----~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-----QG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-----cC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 555555443 332222 33578999999999999999884321 11 22455678999999999865443
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.27 E-value=4.8e-05 Score=76.12 Aligned_cols=153 Identities=17% Similarity=0.123 Sum_probs=92.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
.+.+.|+|..|+|||+|++.+++. ....-..+.++++..... ......+. +. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~----~~-~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEG----ME-Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHH----hh-h
Confidence 357899999999999999999974 222234566766542100 00111111 11 1
Q ss_pred ceEEEEeCCCCCCc-ccchh-hhhhhcC-CCCC-cEEEEEeCCH---------HHHHHhCCcCeeeCCCCChHHHHHHHH
Q 003300 287 KFFLVLDDVWDGDY-KKWDP-FFSCLKN-GHHE-SKILITTRDR---------SVALQLGSIDIIPVKELGEGECCLLFK 353 (832)
Q Consensus 287 ~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~g-s~iivTtr~~---------~~~~~~~~~~~~~l~~L~~~~~~~lf~ 353 (832)
.-+|++||+..... ..|+. +...+.. ...| .++|+||+.. ++...+.....++++++++++-.+.+.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 23789999955321 33433 2233322 1123 3689999744 334445556799999999999999988
Q ss_pred HHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHH
Q 003300 354 QIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIG 390 (832)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 390 (832)
+.+...+ -.-.+++..-|++.+.|..-++..+-
T Consensus 178 ~~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 178 LRARLRG----FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 8664322 12336778889999988765544433
No 90
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=4.2e-05 Score=81.17 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=114.4
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEE------EEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIW------VCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w------v~~~~~~~~~~ 253 (832)
.+++|.++.++.+.+.+.... -...+.++|+.|+||+|+|..+++..--......... ..+.... .
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~ 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---P 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---h
Confidence 579999999999998887642 3456889999999999999888763111110000000 0000000 0
Q ss_pred HHHHHHHHh-------CCC--C-----CCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhcCCC
Q 003300 254 VAKAIIEGL-------GVS--A-----SGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH 314 (832)
Q Consensus 254 ~~~~i~~~l-------~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 314 (832)
.-+.|...- ... . ...-.+++ +..+.+++ .+++-++|+|+++.-+......+...+....
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 111111100 000 0 01122344 23334444 2566799999997776666777777776655
Q ss_pred CCcEEEEEeCCHH-HHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 315 HESKILITTRDRS-VALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 315 ~gs~iivTtr~~~-~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
.++.+|++|.+.. +... ......+.+.+++.++..+++...... ...+....++..++|.|.....+
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--------~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--------LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6677777777653 3222 234678999999999999999875411 11222367899999999865444
No 91
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.24 E-value=3.7e-05 Score=77.08 Aligned_cols=201 Identities=17% Similarity=0.167 Sum_probs=121.8
Q ss_pred Cceecch---hhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhh----hccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRV---DEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEV----KRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~ 252 (832)
+.+||-. +.++++.++|..+. ....+.+.|+|.+|+|||++++.+...--. ...--.++.|.+....+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3466653 45677777777654 357788999999999999999999864111 0011157788888999999
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC-CceEEEEeCCCCC---Ccccchhhhh---hhcCCCCCcEEEEEeCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG-KKFFLVLDDVWDG---DYKKWDPFFS---CLKNGHHESKILITTRD 325 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~---~~~~~~~l~~---~l~~~~~gs~iivTtr~ 325 (832)
.++..|+.+++.+.........+.......++. +--+||+|++++. ....-..+.. .+...-.-+-|.+-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999999876666666666565566642 3448899999662 1111222333 33333344445555553
Q ss_pred HHHHHHh-----CCcCeeeCCCCChHHH-HHHHHHHhhccCC-CCCccchHHHHHHHHHHcCCCh
Q 003300 326 RSVALQL-----GSIDIIPVKELGEGEC-CLLFKQIAFLRRS-FEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 326 ~~~~~~~-----~~~~~~~l~~L~~~~~-~~lf~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~P 383 (832)
.--+-.. +...++.+..-..++- ..|+......-.- ....-...++++.|...++|+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 2222111 1234667776655444 4444332111000 0122344778999999999986
No 92
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=5.5e-05 Score=74.85 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=96.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
.+.+.|+|..|+|||+|++.++... ...+++.. .+...++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHh---------------------hhc-
Confidence 3568999999999999999888631 12244322 111111111 111
Q ss_pred ceEEEEeCCCCCCcccchhhhhhhcC-CCCCcEEEEEeCC---------HHHHHHhCCcCeeeCCCCChHHHHHHHHHHh
Q 003300 287 KFFLVLDDVWDGDYKKWDPFFSCLKN-GHHESKILITTRD---------RSVALQLGSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 287 ~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~---------~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
-+|++||+..... .-+.+...+.. ...|..||+|++. +++...+.....+++++++.++-..++.+.+
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788899954311 11223333322 2236678988873 3444455666799999999999999999887
Q ss_pred hccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHh------cC-CCCHHHHHHHHh
Q 003300 357 FLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLL------RS-KSTVKEWQRILE 407 (832)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~-~~~~~~w~~~~~ 407 (832)
.... -.-.+++...|++.+.|..-++..+-..+ .. +-+....+++++
T Consensus 167 ~~~~----~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 167 ADRQ----LYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred HHcC----CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5432 12336777888998888877665432222 12 235666666665
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=3.1e-05 Score=82.82 Aligned_cols=178 Identities=10% Similarity=0.047 Sum_probs=107.7
Q ss_pred CceecchhhHHHHHHHHhccCCC----CCCCeEEEEEEecCCCcHHHHHHHHHcChhhh------------------ccC
Q 003300 180 GEVCGRVDEKNELLSKLLCESGE----QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK------------------RNF 237 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f 237 (832)
.+++|-+..++.+..++...... ...-...+.++|+.|+|||++|+.++....-. +.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889999999999998764310 00134668899999999999999987621000 001
Q ss_pred CeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhcC
Q 003300 238 EKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLKN 312 (832)
Q Consensus 238 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 312 (832)
+-+.++.... .....+++. .+.+.. .+++-++|+|+++.-+......+...+..
T Consensus 85 pD~~~i~~~~--------------------~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 85 PDVRVVAPEG--------------------LSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCEEEecccc--------------------ccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 1112221110 011122222 122222 24555888899976655555567666666
Q ss_pred CCCCcEEEEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHH
Q 003300 313 GHHESKILITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAK 387 (832)
Q Consensus 313 ~~~gs~iivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 387 (832)
...+..+|++|.+. .+... .+....+.+.+++.++....+.+... ...+.+..++..++|.|....
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---------~~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---------VDPETARRAARASQGHIGRAR 211 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---------CCHHHHHHHHHHcCCCHHHHH
Confidence 55667677766654 33323 23467899999999999888874321 113556788999999996543
No 94
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1.6e-06 Score=66.10 Aligned_cols=55 Identities=29% Similarity=0.480 Sum_probs=49.6
Q ss_pred CcEEecCCCcccccc-ccCCCCceeEEEeCCcCccccc-ccccCCCcccEEeccCcc
Q 003300 463 SPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCR 517 (832)
Q Consensus 463 r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~ 517 (832)
++|++++|.++.+|. .|..+++|++|++++|.++.+| ..|.++++|++|++++|.
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 678999999999985 6788999999999999999886 578999999999999986
No 95
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.24 E-value=3.7e-05 Score=74.31 Aligned_cols=90 Identities=10% Similarity=0.133 Sum_probs=64.1
Q ss_pred CCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHHHHh-CCcCeeeCCCCChHHHHHHHHHHhhccCCC
Q 003300 285 GKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVALQL-GSIDIIPVKELGEGECCLLFKQIAFLRRSF 362 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 362 (832)
+.+-++|+||++.-+....+.+...+......+.+|++|++. .+...+ .....+.+.+++.++....+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 456689999997655556677777776655667777777654 222222 235689999999999988887761
Q ss_pred CCccchHHHHHHHHHHcCCChh
Q 003300 363 EDREKLEPMGRKIAHKCKGLPL 384 (832)
Q Consensus 363 ~~~~~~~~~~~~i~~~~~g~Pl 384 (832)
-..+.+..|++.++|.|.
T Consensus 169 ----i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 ----ISEEAAELLLALAGGSPG 186 (188)
T ss_pred ----CCHHHHHHHHHHcCCCcc
Confidence 114668899999999885
No 96
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.24 E-value=1.4e-05 Score=94.38 Aligned_cols=205 Identities=17% Similarity=0.172 Sum_probs=121.7
Q ss_pred eecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEE---EeCCCcc---HHHHH
Q 003300 182 VCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV---CVSDTFE---GIRVA 255 (832)
Q Consensus 182 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv---~~~~~~~---~~~~~ 255 (832)
++||+.+++.+...+..... +...++.|.|.+|||||+|+++|.. .+.+.+...+-- ....+.. ..+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 68999999999999887654 4667999999999999999999998 333332111111 1111111 11222
Q ss_pred HHHHHH-------------------hCCCCCC----------------------CCcHHH-----HHHHHHHHH-cCCce
Q 003300 256 KAIIEG-------------------LGVSASG----------------------LSEFES-----LMKQIQEYI-MGKKF 288 (832)
Q Consensus 256 ~~i~~~-------------------l~~~~~~----------------------~~~~~~-----~~~~l~~~l-~~k~~ 288 (832)
++++.+ ++..... ....+. ....+..+. +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 333222 2221000 000011 112233333 35699
Q ss_pred EEEEeCCCCCCcccchhhhhhhcCCC----CCcEE--EEEeCCH--HHHHHhCCcCeeeCCCCChHHHHHHHHHHhhccC
Q 003300 289 FLVLDDVWDGDYKKWDPFFSCLKNGH----HESKI--LITTRDR--SVALQLGSIDIIPVKELGEGECCLLFKQIAFLRR 360 (832)
Q Consensus 289 LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~i--ivTtr~~--~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 360 (832)
++|+||+...+....+-+........ ....| +.|.+.. .+.........|.+.||+..+...+........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~- 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT- 235 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-
Confidence 99999996655555444433332221 01122 2333322 122222345789999999999999999876431
Q ss_pred CCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcCC
Q 003300 361 SFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSK 396 (832)
Q Consensus 361 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 396 (832)
.....+....|+++..|+|+-+..+-..+...
T Consensus 236 ----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 236 ----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred ----ccccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 23345677899999999999999998888663
No 97
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.7e-05 Score=84.46 Aligned_cols=197 Identities=14% Similarity=0.154 Sum_probs=111.4
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEE-eCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 258 (832)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-...++...|.. .......-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468999988888888886531 234588999999999999999887321111111111110 00000000011111
Q ss_pred HHHhCC-----CCCCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEe-CCHH
Q 003300 259 IEGLGV-----SASGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT-RDRS 327 (832)
Q Consensus 259 ~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 327 (832)
...... ........+++.+ +.+.+ .+++-++|+|+++.-+...++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 110000 0001111333332 22222 3456688999997665566777877777655667666655 4334
Q ss_pred HHHHh-CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 328 VALQL-GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 328 ~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
+...+ .....+++.+++.++....+...+...+. .-..+.+..|++.++|.+--+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 43322 22457899999999998888876643221 233567789999999987533
No 98
>PRK05642 DNA replication initiation factor; Validated
Probab=98.22 E-value=5.2e-05 Score=75.71 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=93.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
...+.|+|..|+|||.|++++++. ....-..++|++..+ +... . ..+.+.+++-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 367899999999999999999873 222224577776532 1110 0 1222223222
Q ss_pred ceEEEEeCCCCCC-cccchh-hhhhhcC-CCCCcEEEEEeCCHHH---------HHHhCCcCeeeCCCCChHHHHHHHHH
Q 003300 287 KFFLVLDDVWDGD-YKKWDP-FFSCLKN-GHHESKILITTRDRSV---------ALQLGSIDIIPVKELGEGECCLLFKQ 354 (832)
Q Consensus 287 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~~---------~~~~~~~~~~~l~~L~~~~~~~lf~~ 354 (832)
. +||+||+.... ...|.. +...+.. ..+|..||+|++.... ...+.....+++++++.++-...+.+
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 68899995432 134433 4444432 2346678888874322 22233346789999999999999996
Q ss_pred HhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHH
Q 003300 355 IAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGN 391 (832)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 391 (832)
.+....- .-.+++...|++.+.|..-.+..+-.
T Consensus 178 ka~~~~~----~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 178 RASRRGL----HLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHcCC----CCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6643321 22357788899998887655544433
No 99
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.21 E-value=7e-05 Score=73.85 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=94.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
....+.|+|..|+|||.|.+++++.......=..+++++ .++....+...+... . ...+...++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~----~~~~~~~~~- 96 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG-----E----IEEFKDRLR- 96 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----S----HHHHHHHHC-
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc-----c----chhhhhhhh-
Confidence 445688999999999999999998422221222466664 334444554444321 1 123444444
Q ss_pred CceEEEEeCCCCCCcc-cchh-hhhhhcC-CCCCcEEEEEeCCH---------HHHHHhCCcCeeeCCCCChHHHHHHHH
Q 003300 286 KKFFLVLDDVWDGDYK-KWDP-FFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELGEGECCLLFK 353 (832)
Q Consensus 286 k~~LlVlDdv~~~~~~-~~~~-l~~~l~~-~~~gs~iivTtr~~---------~~~~~~~~~~~~~l~~L~~~~~~~lf~ 353 (832)
.-=+|++||++.-... .|.. +...+.. ...|.+||+|+... ++...+...-.+++++++.++-..++.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 3447899999664322 2333 3333322 23466899999642 334445556689999999999999999
Q ss_pred HHhhccCCCCCccchHHHHHHHHHHcCCChhHHHH
Q 003300 354 QIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 388 (832)
+.+....- .-.++++.-|++.+.+..-.+..
T Consensus 177 ~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 177 KKAKERGI----ELPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHTT------S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHH
Confidence 98864432 23356777788877766554443
No 100
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.5e-05 Score=87.28 Aligned_cols=182 Identities=15% Similarity=0.175 Sum_probs=111.4
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh-------------------ccCCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK-------------------RNFEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 240 (832)
.+++|-+..++.+..++.... -...+.++|..|+||||+|+.+++..... +.|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999887532 34567899999999999999998632110 011122
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH----HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCC
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY----IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHE 316 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 316 (832)
+++..+.. ...+++.+.+... ..+++-++|+|+++.-+......+...+......
T Consensus 91 ~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 22222211 1122222111111 1356679999999766555566677777665556
Q ss_pred cEEEEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh-HHHHHHH
Q 003300 317 SKILITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL-AAKVIGN 391 (832)
Q Consensus 317 s~iivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 391 (832)
+.+|++|.+. .+... ......+++++++.++....+.+.+...+. ....+....|++.++|.+- |+..+-.
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6777666543 22211 122468999999999998888776543321 1234566789999999775 4444433
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=4.1e-05 Score=86.28 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=114.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCC--eeEEEEeCCCccHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 257 (832)
.+++|.+..++.+...+.... -...+.++|..|+||||+|+.+++......... ...+-.+... ..-+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHH
Confidence 469999999999999887542 345788999999999999999987421111100 0000000000 01111
Q ss_pred HHHHhCC-----CCCCCCcHHHHHH---HHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeC-CHH
Q 003300 258 IIEGLGV-----SASGLSEFESLMK---QIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTR-DRS 327 (832)
Q Consensus 258 i~~~l~~-----~~~~~~~~~~~~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~ 327 (832)
|...... ........+++.+ .+... ..+++-++|+|+++.-+......+...+......+.+|++|. ...
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111100 0001112233222 22111 124556789999976655566777777766556677766553 333
Q ss_pred HHHHh-CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHH
Q 003300 328 VALQL-GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 328 ~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 388 (832)
+...+ .....+++.+++.++....+.+.+...+. ....+....|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33332 33568999999999999999887643322 22246678899999999865443
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=6e-05 Score=82.61 Aligned_cols=168 Identities=19% Similarity=0.161 Sum_probs=103.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
..-+.|+|..|+|||.|++++++.......-..+++++. .++...+...++... .....+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 456899999999999999999983221122234555543 456666665554211 11233334443 3
Q ss_pred ceEEEEeCCCCCCcc-cc-hhhhhhhcC-CCCCcEEEEEeCCH---------HHHHHhCCcCeeeCCCCChHHHHHHHHH
Q 003300 287 KFFLVLDDVWDGDYK-KW-DPFFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELGEGECCLLFKQ 354 (832)
Q Consensus 287 ~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~---------~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 354 (832)
.-+||+||+...... .+ +.+...+.. ...|..||+|+... .+...+...-.+.+++++.++-..++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 448899999654321 12 334443332 23345688887643 2233344456788999999999999999
Q ss_pred HhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHH
Q 003300 355 IAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIG 390 (832)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 390 (832)
.+...+. ...-.+++...|++.+.|.|-.+.-+.
T Consensus 287 ~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 8754321 113346788899999999997766554
No 103
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.18 E-value=4.7e-06 Score=86.40 Aligned_cols=90 Identities=18% Similarity=0.055 Sum_probs=62.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc--cHHHHHHHHHHHhCCCCCCCCcHHHHH-----HH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EGIRVAKAIIEGLGVSASGLSEFESLM-----KQ 278 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~-----~~ 278 (832)
.-...+|+|.+|+||||||+++|++.... +|+..+||.+.+.. ++.++++.+...+-....+.....+.. -.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999964443 89999999998887 777888888633222222222111111 11
Q ss_pred HHHH--HcCCceEEEEeCCC
Q 003300 279 IQEY--IMGKKFFLVLDDVW 296 (832)
Q Consensus 279 l~~~--l~~k~~LlVlDdv~ 296 (832)
..++ ..+++.+|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 2222 25899999999993
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=7.9e-05 Score=83.50 Aligned_cols=198 Identities=14% Similarity=0.102 Sum_probs=115.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+++...-....+ +-.++.. ..-+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhh
Confidence 468999999999999987532 344578999999999999999987311100000 0000000 0011110
Q ss_pred HH---------hCCC-CCCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeC-CHH
Q 003300 260 EG---------LGVS-ASGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTR-DRS 327 (832)
Q Consensus 260 ~~---------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~ 327 (832)
.. +... ..+..+.+++.+.+... ..+++-++|+|+++.-+......|...+........+|++|. ...
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000 00111222222222211 135566889999977766677777777776555666665554 344
Q ss_pred HHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh-HHHHHHHHh
Q 003300 328 VALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL-AAKVIGNLL 393 (832)
Q Consensus 328 ~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~l 393 (832)
+... ......+++.+++.++....+.+.+...+. .-..+....|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4333 234678999999999998888876654322 1224566788999999774 555554444
No 105
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.2e-07 Score=92.99 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=79.1
Q ss_pred hcccccEEEecCccc--------cccCC--CcEEecCCCccc---cccccCCCCceeEEEeCCcCccccccc--ccCCCc
Q 003300 443 KLACLRALVIRQSLV--------IRLSS--SPFRLHSNLIRE---IPKNVGKLIHLRYLNLSELGIERLPKT--LCELYN 507 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~--------~~~~~--r~L~L~~n~l~~---lp~~l~~l~~L~~L~Ls~~~i~~lp~~--~~~l~~ 507 (832)
++++||...+++..+ ...++ +.|||++|-+.. +-.-..+|++|+.|+|+.|.+...-.+ -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 677888888877542 12222 788888887654 334456788888888888876632211 235678
Q ss_pred ccEEeccCccCcc-ccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCcc
Q 003300 508 LQKLDIRRCRNLK-ELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 508 L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~ 568 (832)
|+.|.|++|.... .+-.-+..+++|+.|++..|............+..|++|+ +.+|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld--Ls~N~l 258 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD--LSNNNL 258 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc--ccCCcc
Confidence 8888888887542 2223345678888888888853333223344567788888 656553
No 106
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=7.8e-05 Score=83.20 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=113.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC-------------------Cee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF-------------------EKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-------------------~~~ 240 (832)
.+++|-+..++.|...+.... -...+.++|..|+||||+|+.+++...-.... ..+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468898888888888886532 24678899999999999999998742111000 012
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEE
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 319 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 319 (832)
+++.......+ .+.+.+.+.+.. -..+++-++|+|+++.-+...+..|...+........+
T Consensus 91 ~eId~a~~~~I------------------d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 91 VEIDGASNRGI------------------DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred EEEecccccCH------------------HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 22211111111 111222111111 12356679999999766555667777777554445556
Q ss_pred EEEeCC-HHHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh-hHHHHHHHHh
Q 003300 320 LITTRD-RSVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP-LAAKVIGNLL 393 (832)
Q Consensus 320 ivTtr~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 393 (832)
|++|.. ..+... ......+++.+++.++....+...+..... .-..+.+..|++.++|.+ .|+..+..++
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 665554 344322 233568899999999999888886654322 123566788999999965 6777766554
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=0.00014 Score=82.58 Aligned_cols=192 Identities=14% Similarity=0.161 Sum_probs=110.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.++...- ..+.. ..+-.+... ....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~-~~~~pC~~C-------~~~~ 83 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALN-CSHKT-DLLEPCQEC-------IENV 83 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhc-ccccC-CCCCchhHH-------HHhh
Confidence 468999999999999887542 345678999999999999999986311 10100 000000000 0000
Q ss_pred -H-----HhCCCC-CCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEe-CCHHHHH
Q 003300 260 -E-----GLGVSA-SGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT-RDRSVAL 330 (832)
Q Consensus 260 -~-----~l~~~~-~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~~~~ 330 (832)
. .+.... ....+.+++.+.+... ..+++-++|+|+++.-....+..+...+........+|++| +...+..
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0 000000 0011122222222211 23566689999997666566777777766554455555544 4444443
Q ss_pred H-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh-HHHHH
Q 003300 331 Q-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL-AAKVI 389 (832)
Q Consensus 331 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 389 (832)
. ......+.+.+++.++....+...+...+. ....+.+..|++.++|.+- |+..+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 334578999999999998888876543321 1224567789999999764 44433
No 108
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.08 E-value=1.9e-07 Score=94.95 Aligned_cols=88 Identities=18% Similarity=0.282 Sum_probs=62.8
Q ss_pred cCCcccceeeccccccccccccccccccccCCCCccceeeecccccccC-CCCCCCCCCCcCeEEEcCChhhHHhhccCC
Q 003300 735 IAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKA-LPDYLLQTTTLQDLTIWKCPILENRYREGK 813 (832)
Q Consensus 735 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 813 (832)
.++|.|+.|.+++|...++-.+... ......+..|+.|.+.+||.+.. .-..+..+++|+.+++.+|..+.+....
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l-~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~-- 445 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHL-SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS-- 445 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhh-hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH--
Confidence 4789999999999987776633111 12234678899999999997765 2234566899999999999987765321
Q ss_pred CCCcccccccCccccc
Q 003300 814 GEDWHKISHIPHIKWW 829 (832)
Q Consensus 814 g~~~~~i~~ip~i~~~ 829 (832)
+-..|+|+++++
T Consensus 446 ----~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 446 ----RFATHLPNIKVH 457 (483)
T ss_pred ----HHHhhCccceeh
Confidence 123578877764
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.08 E-value=6.6e-05 Score=88.78 Aligned_cols=180 Identities=17% Similarity=0.135 Sum_probs=99.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc------CCeeEE-EEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEKVIW-VCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~~~~~~~~ 252 (832)
..++||+++++++++.|... ...-+.++|.+|+||||+|+.++.. +... ....+| ++++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 35899999999999998764 3345679999999999999999973 3211 112232 22221
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH--cCCceEEEEeCCCCCCc-----ccch--h-hhhhhcCCCCCcEEEEE
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYI--MGKKFFLVLDDVWDGDY-----KKWD--P-FFSCLKNGHHESKILIT 322 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~-----~~~~--~-l~~~l~~~~~gs~iivT 322 (832)
+........+.+.....+.... .+++.+|++|+++.-.. ..-+ . +...+.. ..-++|-+
T Consensus 254 ---------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Iga 322 (852)
T TIGR03345 254 ---------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAA 322 (852)
T ss_pred ---------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEe
Confidence 0000011112222222222222 24689999999865311 1112 1 3333222 23566767
Q ss_pred eCCHHHHHH-------hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 323 TRDRSVALQ-------LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 323 tr~~~~~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
|...+.... ......+.+++++.++...++....-.-+....-.-..+....+++.+.++.
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 765433211 1234689999999999999976544221110111223556677777776654
No 110
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00011 Score=85.67 Aligned_cols=182 Identities=11% Similarity=0.047 Sum_probs=113.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC---------------------C
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF---------------------E 238 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---------------------~ 238 (832)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+++...-.... .
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 368999999999999987542 33567899999999999999998742111100 0
Q ss_pred eeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHH---HHH-HHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC
Q 003300 239 KVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMK---QIQ-EYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH 314 (832)
Q Consensus 239 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 314 (832)
.+++++.... ..++++.+ .+. .-..++.-++|||+++.-+...+..|+..+....
T Consensus 90 dv~eidaas~---------------------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 90 DVTEIDAASH---------------------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred cEEEeccccc---------------------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 1122221111 11222222 111 1123555688999998777677777888887765
Q ss_pred CCcEEEEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh-HHHHHHH
Q 003300 315 HESKILITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL-AAKVIGN 391 (832)
Q Consensus 315 ~gs~iivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 391 (832)
..+.+|++|.+. .+... ......|++..++.++...++.+..-..+. ....+....|++.++|.+. ++..+-.
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv----~id~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV----PVEPGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 666666666443 34333 234678999999999998888776533221 1224556788999999874 3333333
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.06 E-value=3.1e-05 Score=83.31 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=100.1
Q ss_pred CCceecchhhHHHHHHHHhccCCC-------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGE-------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEG 251 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 251 (832)
..++.|++..++++.+.+...-.. .....+.+.++|++|+|||++|+++++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 346899999999998877532110 0123456899999999999999999983 33332 22211
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCCCC-----------cccchhhhhhh---cC--CC
Q 003300 252 IRVAKAIIEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWDGD-----------YKKWDPFFSCL---KN--GH 314 (832)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l---~~--~~ 314 (832)
..+.... .+ ........+.+.. ...+.+|++|+++.-. ......+...+ .. ..
T Consensus 190 ~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111110 00 1111222222222 3467899999985421 01111222222 21 13
Q ss_pred CCcEEEEEeCCHHHHH-Hh----CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 315 HESKILITTRDRSVAL-QL----GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 315 ~gs~iivTtr~~~~~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
.+.+||.||....... .+ .....+.+...+.++..++|..++..... ..... ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 4667888887543221 11 12457899999999999999988754322 11112 356777787764
No 112
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00025 Score=78.29 Aligned_cols=182 Identities=15% Similarity=0.120 Sum_probs=109.0
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhh--h-----------------ccCCee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEV--K-----------------RNFEKV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~-----------------~~f~~~ 240 (832)
.+++|-+..++.+..++.... -...+.++|..|+||||+|+.++....- . +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468999999999999886532 3456678999999999999998863110 0 011112
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEE
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 319 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 319 (832)
+++..+..... .+.+.+.+.+... ..+++-++|+|+++.-+...++.+...+........+
T Consensus 91 ~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22221111111 1112222222111 1356679999999765555566676666655555556
Q ss_pred EEEeCC-HHHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHH
Q 003300 320 LITTRD-RSVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 320 ivTtr~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 388 (832)
|++|.+ ..+... ......+.+.+++.++....+.+.+...+. ....+.+..|++.++|.+..+..
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 655543 333322 233568999999999998888887654332 22345677889999997754433
No 113
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00011 Score=79.30 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=105.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh------ccCCee-EEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK------RNFEKV-IWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~-~wv~~~~~~~~~ 252 (832)
.+++|.+..++.+...+.... -.+.+.++|..|+||||+|+.+++..... ..|... +-+.........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 468999999999999886532 34688899999999999999997731110 112111 111111111111
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCC-HHHHHH
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRD-RSVALQ 331 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~~~ 331 (832)
-.+.+++++... -..+++-++|+|++..-....+..+...+......+.+|++|.. ..+...
T Consensus 92 -~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 -DIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred -HHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111111111100 01245568999999654444566666655444445556655533 222222
Q ss_pred -hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhH
Q 003300 332 -LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 332 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
......+++.+++.++....+...+...+. .-..+.+..+++.++|.+-.
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~----~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGI----KFEDDALHIIAQKADGALRD 205 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHH
Confidence 223457899999999999888887754332 12256778889999986653
No 114
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=8e-05 Score=84.91 Aligned_cols=193 Identities=16% Similarity=0.162 Sum_probs=112.0
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+++.......+. -...+..-...+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 469999999999988886532 345678999999999999999986311000000 000111112222222
Q ss_pred HHhCCC-----CCCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HH
Q 003300 260 EGLGVS-----ASGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SV 328 (832)
Q Consensus 260 ~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~ 328 (832)
...... .......+++.+ +.+.+ .+++-++|+|+++.-+.+..+.|...+......+.+|++|.+. .+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 211110 001122222222 11211 2456689999996655455666777666555566666666443 33
Q ss_pred HHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHH
Q 003300 329 ALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 329 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 388 (832)
... ......+.+++++.++....+.+.+...+. .-..+.+..|++.++|.+..+..
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl----~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI----NLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 322 233567889999999998888877654322 12346678999999998865443
No 115
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00017 Score=81.38 Aligned_cols=196 Identities=13% Similarity=0.148 Sum_probs=110.4
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEE-eCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 258 (832)
.+++|-+..++.+...+.... -...+.++|..|+||||+|+.+++...-...++...|.. ....+..-..-+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999988998888886532 345688999999999999998887321111111011110 00000000111111
Q ss_pred HHHhCC-----CCCCCCcHHHHHHHHHHH----HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEe-CCHHH
Q 003300 259 IEGLGV-----SASGLSEFESLMKQIQEY----IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT-RDRSV 328 (832)
Q Consensus 259 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~~ 328 (832)
...-.. ........+++.+.+... ..+++-++|+|+++.-+....+.|...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 100000 000111233333322222 23556688999996655555667777776655556655555 43444
Q ss_pred HHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh
Q 003300 329 ALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL 384 (832)
Q Consensus 329 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 384 (832)
... ......+++.+++.++....+.+.+...+. .-..+.+..|++.++|..-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHH
Confidence 333 344678999999999988888776543221 1235677889999999654
No 116
>PLN03150 hypothetical protein; Provisional
Probab=98.04 E-value=4.1e-06 Score=96.33 Aligned_cols=91 Identities=22% Similarity=0.382 Sum_probs=80.2
Q ss_pred ceeEEEeCCcCcc-cccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCce
Q 003300 484 HLRYLNLSELGIE-RLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKF 562 (832)
Q Consensus 484 ~L~~L~Ls~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~ 562 (832)
.++.|+|++|.+. .+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|.....+|..+++|++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~-- 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN-- 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE--
Confidence 5889999999998 8899999999999999999998889999999999999999999988888999999999999999
Q ss_pred eeCCccCCCCccCc
Q 003300 563 VVGGGIDGSNTCRL 576 (832)
Q Consensus 563 ~~~~~~~~~~~~~l 576 (832)
+.+|.+.+..+..+
T Consensus 497 Ls~N~l~g~iP~~l 510 (623)
T PLN03150 497 LNGNSLSGRVPAAL 510 (623)
T ss_pred CcCCcccccCChHH
Confidence 77777655444433
No 117
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=7.3e-06 Score=84.39 Aligned_cols=182 Identities=24% Similarity=0.235 Sum_probs=123.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCC-eeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
..+-+.++|.|||||||++-.+.. .+..|. .++++....-.+...+.-.....++...... +.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 567899999999999999988886 455674 6777777777777777777777677654332 223445666777
Q ss_pred CCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHHHhCCcCeeeCCCCChH-HHHHHHHHHhhccCCC-
Q 003300 285 GKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVALQLGSIDIIPVKELGEG-ECCLLFKQIAFLRRSF- 362 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 362 (832)
++|.++|+||..+-- +.-..+...+..+...-.|+.|+|..... .......+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 899999999982210 11122333444455566788888865332 33456677777654 7888887765433221
Q ss_pred CCccchHHHHHHHHHHcCCChhHHHHHHHHhcCCC
Q 003300 363 EDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSKS 397 (832)
Q Consensus 363 ~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~ 397 (832)
.-.........+|.++..|.|++|..+++..++-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~ 197 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS 197 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC
Confidence 22333456778999999999999999998887653
No 118
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.99 E-value=3.7e-05 Score=81.85 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=76.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.++++.++.++.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||++++..+..+....+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999988753 3588899999999999999998543345678899999999888776654221
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHH--cCCceEEEEeCCCCCCccc-chhhhhhh
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYI--MGKKFFLVLDDVWDGDYKK-WDPFFSCL 310 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~-~~~l~~~l 310 (832)
-. +....... ....+.+.+.. .++++++|+|++...+... +..+...+
T Consensus 247 P~-~vgy~~~~--G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 PN-GVGFRRKD--GIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred CC-CCCeEecC--chHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 00 00000000 01111122222 2468999999997655433 44444433
No 119
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00023 Score=81.00 Aligned_cols=176 Identities=15% Similarity=0.176 Sum_probs=111.4
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhh---------------------hccCC
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEV---------------------KRNFE 238 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~f~ 238 (832)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.++....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999886532 3456889999999999999888763110 01222
Q ss_pred eeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH----HcCCceEEEEeCCCCCCcccchhhhhhhcCCC
Q 003300 239 KVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY----IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH 314 (832)
Q Consensus 239 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 314 (832)
+..++.+.... .+++.+.+.+. ..+++=++|+|++..-+...++.|...+....
T Consensus 92 -~~~ld~~~~~~---------------------vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 -IHELDAASNNS---------------------VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred -eEEecccccCC---------------------HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 12222221111 22222222111 12455588999997766566777888777655
Q ss_pred CCcEEEEEe-CCHHHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 315 HESKILITT-RDRSVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 315 ~gs~iivTt-r~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
..+.+|++| ....+... ......+++.+++.++....+.+.+...+. ....+.+..|++.++|..--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 667666655 44444433 234678999999999999888886654322 222456788999999976433
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00031 Score=77.54 Aligned_cols=180 Identities=14% Similarity=0.131 Sum_probs=112.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc--c----------------CC-ee
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR--N----------------FE-KV 240 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~----------------f~-~~ 240 (832)
.+++|-+..++.+...+.... -..+..++|..|+||||+|+.+++..--.. . +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 469999988999998886532 345678999999999999998876311000 0 00 11
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH----HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCC
Q 003300 241 IWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY----IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHE 316 (832)
Q Consensus 241 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 316 (832)
+.+..+.. ...+++.+.+... ..+++-++|+|+++.-+.+....+...+......
T Consensus 89 ~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 22211111 1122222222210 1145568899999776666677777777665666
Q ss_pred cEEEEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 317 SKILITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 317 s~iivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
+++|++|.+. .+... ......+++.+++.++....+.+.+...+. .-..+.+..|++.++|.+.-+...
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 7777777664 22111 233568999999999998888876644322 223567789999999988544433
No 121
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.9e-07 Score=90.56 Aligned_cols=132 Identities=19% Similarity=0.177 Sum_probs=83.6
Q ss_pred cCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcC-CCCCCccEEEEEeeCCC
Q 003300 584 LLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTL-QPPLSVEKLGIILYGGN 662 (832)
Q Consensus 584 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 662 (832)
.|+.++++.+..+.. ......+.+|+.|..|+++||.... +.+.... .--.+|..|+++||.-.
T Consensus 235 ~L~~lnlsm~sG~t~--n~~~ll~~scs~L~~LNlsWc~l~~-------------~~Vtv~V~hise~l~~LNlsG~rrn 299 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTE--NALQLLLSSCSRLDELNLSWCFLFT-------------EKVTVAVAHISETLTQLNLSGYRRN 299 (419)
T ss_pred cceeeccccccccch--hHHHHHHHhhhhHhhcCchHhhccc-------------hhhhHHHhhhchhhhhhhhhhhHhh
Confidence 344444444433332 2334567888999999999997542 1111111 12357889999988654
Q ss_pred CCCchh----ccccCCcEEEEeccCCCCc--CCCCCCcc-ccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCcc
Q 003300 663 IFPKWL----TSLTNLRNLYLRSCVKCEH--LPPLGKLP-LEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVI 735 (832)
Q Consensus 663 ~~p~~l----~~l~~L~~L~L~~~~~~~~--l~~l~~lp-L~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (832)
-.-..+ ..+|+|.+|||++|..++. +..+-+++ |+++.+++|..+. .+.+. .+.
T Consensus 300 l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~-----------------~l~ 360 (419)
T KOG2120|consen 300 LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLL-----------------ELN 360 (419)
T ss_pred hhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHee-----------------eec
Confidence 332232 3789999999999987764 23356677 8888888887542 22221 146
Q ss_pred CCcccceeeccccc
Q 003300 736 AFPKLKSLIIGAME 749 (832)
Q Consensus 736 ~~~~L~~L~l~~~~ 749 (832)
..|+|.+|++.+|-
T Consensus 361 s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 361 SKPSLVYLDVFGCV 374 (419)
T ss_pred cCcceEEEEecccc
Confidence 78999999888864
No 122
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00073 Score=65.31 Aligned_cols=182 Identities=18% Similarity=0.213 Sum_probs=110.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe-CCCccHHHHHHHHHHHhCCCCCCC--CcHHHHHHHHHH
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV-SDTFEGIRVAKAIIEGLGVSASGL--SEFESLMKQIQE 281 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~ 281 (832)
++.+++.|+|.-|.|||.++++.... .. =+.++-|.+ .+..+...+...|+..+..+.... ...++....+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LN--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cC--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 35679999999999999999944431 11 122222333 344566778888888887732221 123333444444
Q ss_pred HH-cCCc-eEEEEeCCCCCCcccchhhhhhhcCCCCCc---EEEEEeCCH--------HHHHHhCCcCe-eeCCCCChHH
Q 003300 282 YI-MGKK-FFLVLDDVWDGDYKKWDPFFSCLKNGHHES---KILITTRDR--------SVALQLGSIDI-IPVKELGEGE 347 (832)
Q Consensus 282 ~l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTtr~~--------~~~~~~~~~~~-~~l~~L~~~~ 347 (832)
.. ++++ ..+++|++.....+..+.++-.......++ +|+....-+ .....-..... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 44 4777 899999997766556666554433222222 244443311 11111111234 9999999999
Q ss_pred HHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHH
Q 003300 348 CCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGN 391 (832)
Q Consensus 348 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 391 (832)
...++.....+... ..+--..+....|.....|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99888887765533 22223356778899999999999987764
No 123
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00038 Score=79.16 Aligned_cols=194 Identities=15% Similarity=0.142 Sum_probs=111.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.++.++.+..++.... -...+.++|..|+||||+|+.+++...- ...+.... ..+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~~~~~~~~----~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNC-LNSDKPTP----EPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcC-CCcCCCCC----CCCcccHHHHHHh
Confidence 468999999999998887532 2356789999999999999999874211 11100000 0111112222222
Q ss_pred HHhCC-----CCCCCCcHHHHHHHHHHH----HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHH
Q 003300 260 EGLGV-----SASGLSEFESLMKQIQEY----IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVA 329 (832)
Q Consensus 260 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~ 329 (832)
..... ........+++.+.+... ..+++-++|+|+++.-+...+..+...+........+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11111 001112233332222211 12455688999997665556777777776655556666555543 333
Q ss_pred HH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHH
Q 003300 330 LQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAK 387 (832)
Q Consensus 330 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 387 (832)
.. ......+++.+++.++....+.+.+...+. .-..+.+..|++.++|.+..+.
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi----~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI----EIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 22 233567889999999988888776643221 1124567889999999875443
No 124
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.94 E-value=0.00034 Score=67.96 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=64.6
Q ss_pred cCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 178 DEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 178 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
...+++|.+..++.+++--..=-. .....-+.+||..|.|||++++++.+. ....==..+-| .
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~--y~~~GLRlIev--~----------- 87 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNE--YADQGLRLIEV--S----------- 87 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHH--HhhcCceEEEE--C-----------
Confidence 345799999999888754322111 124556788999999999999999873 22111112222 1
Q ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC
Q 003300 258 IIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN 312 (832)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~ 312 (832)
..+..++..+.+.+.. +..||+|.+||+--+ ....+..+...+..
T Consensus 88 --------k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 88 --------KEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred --------HHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 1122333333333332 457999999998443 33456667766654
No 125
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.94 E-value=1.9e-05 Score=82.54 Aligned_cols=90 Identities=17% Similarity=0.070 Sum_probs=62.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC--ccHHHHHHHHHHHhCCCCCCCCcH------HHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FEGIRVAKAIIEGLGVSASGLSEF------ESLMK 277 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 277 (832)
.-..++|+|.+|.|||||++.+++... .++|+..+||.+.++ .++.++++.+...+-....+.... ..+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 456799999999999999999998533 236999999998866 788999999855443322222111 11122
Q ss_pred HHHHH-HcCCceEEEEeCCC
Q 003300 278 QIQEY-IMGKKFFLVLDDVW 296 (832)
Q Consensus 278 ~l~~~-l~~k~~LlVlDdv~ 296 (832)
....+ -.+++.+|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 25899999999994
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.93 E-value=0.00011 Score=77.87 Aligned_cols=146 Identities=16% Similarity=0.097 Sum_probs=86.0
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.++..+.+..++... .-..++.++|.+|+|||++|+.+++. ... ....++.+. .... ..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~~-~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRID-FVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccHH-HHHHHH
Confidence 56899999999999988643 24567778999999999999999873 221 233444443 1111 111111
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHH--HcCCceEEEEeCCCCC-CcccchhhhhhhcCCCCCcEEEEEeCCHHHH-HH-hCC
Q 003300 260 EGLGVSASGLSEFESLMKQIQEY--IMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTRDRSVA-LQ-LGS 334 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~-~~-~~~ 334 (832)
.. .... +.+.+-++|+||++.. .....+.+...+.....++++|+||...... .. .+.
T Consensus 89 ~~-----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 89 TR-----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HH-----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 11 0011 1134557899999654 2222333444454445677888888754321 11 122
Q ss_pred cCeeeCCCCChHHHHHHHHH
Q 003300 335 IDIIPVKELGEGECCLLFKQ 354 (832)
Q Consensus 335 ~~~~~l~~L~~~~~~~lf~~ 354 (832)
...+.++..+.++...++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 45677777888877665543
No 127
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=2.7e-05 Score=81.82 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=43.4
Q ss_pred CCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCC
Q 003300 480 GKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVG 549 (832)
Q Consensus 480 ~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~ 549 (832)
..+.+++.|++++|.++.+|. + -.+|++|.+++|..+..+|..+ .++|++|++++|..+..+|..
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 345677778888777777762 2 2357788888777777777654 357788888777555555543
No 128
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00048 Score=75.67 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=108.4
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc---------------------cCC
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR---------------------NFE 238 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~ 238 (832)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+++...-.. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999886532 346688999999999999998886311100 011
Q ss_pred eeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCc
Q 003300 239 KVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHES 317 (832)
Q Consensus 239 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 317 (832)
.+++....... ..+..++.+.+.. -..+++-++|+|+++.-.....+.+...+.......
T Consensus 92 -~~~i~g~~~~g------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRG------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCC------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 11111101000 1111221211111 113566788999996554445556666666655566
Q ss_pred EEEEEeCC-HHHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh-HHHHH
Q 003300 318 KILITTRD-RSVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL-AAKVI 389 (832)
Q Consensus 318 ~iivTtr~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 389 (832)
.+|++|.. ..+... ......+++.+++.++....+.+.+...+. ....+.+..|++.++|.+- |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 67766643 333222 233568999999999998888876643221 2235677889999999764 44443
No 129
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00019 Score=69.98 Aligned_cols=174 Identities=22% Similarity=0.186 Sum_probs=101.0
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+|+|.++.++++.-.+..... ..+..-.+.++|++|.||||||.-+++...+ .+ -++.+....-..=+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGV--NL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--Ce----EecccccccChhhHHHHH
Confidence 4799999888888777765443 3456788999999999999999999984322 22 121111111111122222
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcC--------CCCC-----------cEEE
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKN--------GHHE-----------SKIL 320 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~g-----------s~ii 320 (832)
..+. . .=++.+|.++.-....-+.+..++.+ .+++ +-|=
T Consensus 99 t~Le---------------------~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNLE---------------------E-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcCC---------------------c-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 2222 1 22445566644332211112221111 1122 3344
Q ss_pred EEeCCHHHHHHhCC--cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 321 ITTRDRSVALQLGS--IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 321 vTtr~~~~~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
-|||.-.+...+.. .-+.+++.-+.+|-.+...+.+..-+. +-.++.+.+|++...|-|--.
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHH
Confidence 68886544433322 236788888999999999988743322 334677889999999999643
No 130
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.89 E-value=0.00048 Score=70.12 Aligned_cols=168 Identities=18% Similarity=0.255 Sum_probs=104.5
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
.+.|.+|+.++..+...+...+. --+..|.|+|.+|.|||.+.+++.+.. . ...+|+++-..++.+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHH
Confidence 46789999999999998866542 134456899999999999999999843 1 247899999999999999999
Q ss_pred HHHhCCCCCCCC-------cHHHHHHHHHHH--H--cCCceEEEEeCCCCCCcccchh-hhhhh---cC--CCCCcEEEE
Q 003300 259 IEGLGVSASGLS-------EFESLMKQIQEY--I--MGKKFFLVLDDVWDGDYKKWDP-FFSCL---KN--GHHESKILI 321 (832)
Q Consensus 259 ~~~l~~~~~~~~-------~~~~~~~~l~~~--l--~~k~~LlVlDdv~~~~~~~~~~-l~~~l---~~--~~~gs~iiv 321 (832)
+...+....+.. .....+..+.++ . +++.++||+|+++.- .+.+. +...+ .. ..+...|+.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 999863222211 112222233331 1 256899999999432 23222 11111 11 123333333
Q ss_pred EeCCH-HHHH-HhCC--cCeeeCCCCChHHHHHHHHHHh
Q 003300 322 TTRDR-SVAL-QLGS--IDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 322 Ttr~~-~~~~-~~~~--~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
..-.. ..-. .+|. ..++....-+.+|..+++.+..
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 22221 1111 1344 3356777889999988887743
No 131
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.0006 Score=77.43 Aligned_cols=210 Identities=12% Similarity=0.167 Sum_probs=116.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.+..++.+...+.... -...+.++|..|+||||+|+.+++...-....+. ..+..-..-+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 469999999999999886532 3456789999999999999988873111000000 0000000000110
Q ss_pred HH-------hCCC-CCCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCC-HHHH
Q 003300 260 EG-------LGVS-ASGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRD-RSVA 329 (832)
Q Consensus 260 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~ 329 (832)
.. +... .....+.+++...+... ..+++-++|+|+++.-+......+...+......+.+|++|.+ ..+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000 00011122222222111 1245558899999766655666777777665556666665543 4444
Q ss_pred HH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh-hHHHHHHHHhc---CCCCHHHHHH
Q 003300 330 LQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP-LAAKVIGNLLR---SKSTVKEWQR 404 (832)
Q Consensus 330 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l~---~~~~~~~w~~ 404 (832)
.. ......+++.+++.++....+...+...+. .-..+....|++.++|.. .|+..+-.++. ++-+.+++..
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~ 239 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAE 239 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 33 233568899999999988888776543321 123556778999999965 45555544332 2224555554
Q ss_pred H
Q 003300 405 I 405 (832)
Q Consensus 405 ~ 405 (832)
+
T Consensus 240 l 240 (576)
T PRK14965 240 L 240 (576)
T ss_pred H
Confidence 4
No 132
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.89 E-value=0.00015 Score=85.28 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=87.9
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhh---hccC-CeeEEEEeCCCccHHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEV---KRNF-EKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~f-~~~~wv~~~~~~~~~~~~~ 256 (832)
.++||+++++++++.|... ...-+.++|.+|+|||++|+.+++.... ...+ ...+|. + +...+.
T Consensus 183 ~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~- 250 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL- 250 (731)
T ss_pred cccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh-
Confidence 5899999999999998654 3345679999999999999999973211 1111 233442 1 111111
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCCCC---------cccchhhhhhhcCCCCCcEEEEEeCCH
Q 003300 257 AIIEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWDGD---------YKKWDPFFSCLKNGHHESKILITTRDR 326 (832)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~~ 326 (832)
.. .....+.++....+.+.+ +.++.+|++|+++.-. .+.-+.+...+.. ..-++|-+|...
T Consensus 251 ---a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~ 321 (731)
T TIGR02639 251 ---AG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYE 321 (731)
T ss_pred ---hh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHH
Confidence 00 001122333333444333 3467899999996321 0111223333322 123555555543
Q ss_pred HHHHH-------hCCcCeeeCCCCChHHHHHHHHHHhh
Q 003300 327 SVALQ-------LGSIDIIPVKELGEGECCLLFKQIAF 357 (832)
Q Consensus 327 ~~~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~~ 357 (832)
+.... ......+.+++++.++..+++....-
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 32111 12245799999999999999997553
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.87 E-value=0.00044 Score=75.71 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=103.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccC--CeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
...+.|+|..|+|||.|++++++. ..... ..+++++. .++...+...+... ..+ .+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHH----HHHHHHH
Confidence 456899999999999999999984 33332 24566643 33344444444321 122 2333333
Q ss_pred CCceEEEEeCCCCCCccc-c-hhhhhhhcC-CCCCcEEEEEeCCH-H--------HHHHhCCcCeeeCCCCChHHHHHHH
Q 003300 285 GKKFFLVLDDVWDGDYKK-W-DPFFSCLKN-GHHESKILITTRDR-S--------VALQLGSIDIIPVKELGEGECCLLF 352 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~-~--------~~~~~~~~~~~~l~~L~~~~~~~lf 352 (832)
+ .-+||+||++...... + +.+...+.. ...+..+|+|+... . +...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 3488999996532221 1 223333322 12345678877642 1 1112223357899999999999999
Q ss_pred HHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHH----HHHH---hcCCCCHHHHHHHHhh
Q 003300 353 KQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV----IGNL---LRSKSTVKEWQRILES 408 (832)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~----~~~~---l~~~~~~~~w~~~~~~ 408 (832)
.+.+..... .-.+++...|++.+.|..-.+.- +..+ ....-+.+..++++..
T Consensus 278 ~~~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 278 QKKAEEEGL----ELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKD 336 (405)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 998754322 22367778889998887664332 2211 1122356677777664
No 134
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.87 E-value=0.00011 Score=72.55 Aligned_cols=182 Identities=15% Similarity=0.082 Sum_probs=113.9
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeE-EEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI-WVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i 258 (832)
.+++|-+..+..+...+... .......+|++|.|||+-|+.++...--.+.|..++ -.+++..-... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 46899999999999988762 567889999999999999998887422234454332 23333322111 0000
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHH--cCCc-eEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHH-HH-hC
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYI--MGKK-FFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVA-LQ-LG 333 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~-~~-~~ 333 (832)
...+...+.....+.. .-++ -.+|||+++.-..+.|..+...+......++.|+.+.+-... .. ..
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0001111100000000 0122 378999998877889999999888767777877666653322 11 23
Q ss_pred CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC
Q 003300 334 SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL 382 (832)
Q Consensus 334 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 382 (832)
...-|..++|.+++...-+...+-.++. +...+..+.|++.++|-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGD 223 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCc
Confidence 3557899999999998888887755443 22355667888888884
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.5e-05 Score=55.35 Aligned_cols=34 Identities=35% Similarity=0.477 Sum_probs=22.3
Q ss_pred ceeEEEeCCcCcccccccccCCCcccEEeccCcc
Q 003300 484 HLRYLNLSELGIERLPKTLCELYNLQKLDIRRCR 517 (832)
Q Consensus 484 ~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~ 517 (832)
+|++|++++|+|+.+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5667777777777776666777777777777765
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=97.85 E-value=0.0008 Score=69.21 Aligned_cols=137 Identities=11% Similarity=0.024 Sum_probs=73.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
...+.++|.+|+|||++|+.++......+.-...-|+.++ ..++. ...-+.. .......+.+ . .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~----~~~~g~~-----~~~~~~~l~~-a--~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLV----GQYIGHT-----APKTKEVLKK-A--M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHH----HHHhccc-----hHHHHHHHHH-c--c
Confidence 3458899999999999999998732111111111244333 11222 1111111 1111122222 1 2
Q ss_pred ceEEEEeCCCCC---------CcccchhhhhhhcCCCCCcEEEEEeCCHHHHHHh--------CCcCeeeCCCCChHHHH
Q 003300 287 KFFLVLDDVWDG---------DYKKWDPFFSCLKNGHHESKILITTRDRSVALQL--------GSIDIIPVKELGEGECC 349 (832)
Q Consensus 287 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~--------~~~~~~~l~~L~~~~~~ 349 (832)
.-+|++|++..- ..+..+.+...+.....+.+||+++......... .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 348999999542 1112233444444444556677777544332111 12457999999999999
Q ss_pred HHHHHHhhcc
Q 003300 350 LLFKQIAFLR 359 (832)
Q Consensus 350 ~lf~~~~~~~ 359 (832)
+++...+...
T Consensus 203 ~I~~~~l~~~ 212 (287)
T CHL00181 203 QIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHh
Confidence 9998877543
No 137
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.0012 Score=72.37 Aligned_cols=154 Identities=17% Similarity=0.151 Sum_probs=89.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
..-+.|+|..|+|||+|++++++. .......+++++. ..+...+...+... . .+.+.+..+ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 456889999999999999999984 3322344566653 33444444444321 1 122333333 3
Q ss_pred ceEEEEeCCCCCCcccc--hhhhhhhcC-CCCCcEEEEEeCCH---------HHHHHhCCcCeeeCCCCChHHHHHHHHH
Q 003300 287 KFFLVLDDVWDGDYKKW--DPFFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELGEGECCLLFKQ 354 (832)
Q Consensus 287 ~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~---------~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 354 (832)
.-+|++||+.......+ +.+...+.. ...|..||+||... .+...+.....+.+.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999855322222 223333221 12345688888542 2222233346889999999999999998
Q ss_pred HhhccCCCCCccchHHHHHHHHHHcCCC
Q 003300 355 IAFLRRSFEDREKLEPMGRKIAHKCKGL 382 (832)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 382 (832)
.+..... .-.+++..-|+..+.|.
T Consensus 283 k~~~~~~----~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSI----RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCC----CCCHHHHHHHHHhcCCC
Confidence 7754321 22245566677766654
No 138
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.0016 Score=68.81 Aligned_cols=202 Identities=14% Similarity=0.132 Sum_probs=119.9
Q ss_pred cCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC-----ccHH
Q 003300 178 DEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-----FEGI 252 (832)
Q Consensus 178 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 252 (832)
+.+.+|+|...-+++.+.+..+ ...+.|.|.-.+|||+|...+.+..+.. .| .++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHH
Confidence 4456888986677777777653 3479999999999999999988743322 33 4667776542 2345
Q ss_pred HHHHHHH----HHhCCCCC-------CCCcHHHHHHHHHHHH---cCCceEEEEeCCCCCCc--ccchhhhhhhcC----
Q 003300 253 RVAKAII----EGLGVSAS-------GLSEFESLMKQIQEYI---MGKKFFLVLDDVWDGDY--KKWDPFFSCLKN---- 312 (832)
Q Consensus 253 ~~~~~i~----~~l~~~~~-------~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~--~~~~~l~~~l~~---- 312 (832)
+.++.++ .+++.... ...........+.+++ .+++.+|++|+++..-. ...+++...+..
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 4554444 44444321 1112223333444432 26899999999965311 111233333221
Q ss_pred CC----CCcEEEEEeCCHHH--HHH-----hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCC
Q 003300 313 GH----HESKILITTRDRSV--ALQ-----LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKG 381 (832)
Q Consensus 313 ~~----~gs~iivTtr~~~~--~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 381 (832)
.. ...-.++.....+. ... ......+++++++.+|...|..++...- .....++|...++|
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--------~~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--------SQEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--------CHHHHHHHHHHHCC
Confidence 11 11112222222111 111 1224589999999999999998874321 12237899999999
Q ss_pred ChhHHHHHHHHhcCC
Q 003300 382 LPLAAKVIGNLLRSK 396 (832)
Q Consensus 382 ~Plai~~~~~~l~~~ 396 (832)
+|.-+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999764
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.84 E-value=0.00029 Score=71.96 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=80.3
Q ss_pred ceecchhhHHHHHHH---Hhc------cCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccH
Q 003300 181 EVCGRVDEKNELLSK---LLC------ESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEG 251 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~---L~~------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 251 (832)
.++|.+..+++|.+. ... ..-...+....+.++|.+|+||||+|+.+++.....+......++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478887766655433 211 1001123456788999999999999999986321111111112222211
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCC--------cccchhhhhhhcCCCCCcEEEEEe
Q 003300 252 IRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGD--------YKKWDPFFSCLKNGHHESKILITT 323 (832)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTt 323 (832)
.++.. ..- + .......+.+.+ - ..-+|++|+++.-. .+..+.+...+........+|+++
T Consensus 83 ~~l~~----~~~----g-~~~~~~~~~~~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVG----EYI----G-HTAQKTREVIKK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhh----hhc----c-chHHHHHHHHHh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11111 100 0 011111222222 1 23488999996521 112233444443333334555555
Q ss_pred CCHHHHH------Hh-CC-cCeeeCCCCChHHHHHHHHHHhhc
Q 003300 324 RDRSVAL------QL-GS-IDIIPVKELGEGECCLLFKQIAFL 358 (832)
Q Consensus 324 r~~~~~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~ 358 (832)
....... .+ .. ...+.+++++.++-.+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4332211 11 11 246899999999999999987743
No 140
>PRK06620 hypothetical protein; Validated
Probab=97.83 E-value=0.00069 Score=66.46 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=80.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKK 287 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 287 (832)
+.+.|+|.+|+|||+|++.+++... ..++. ..... + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-------AYIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-------CEEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6799999999999999998876321 12221 00000 0 011 123
Q ss_pred eEEEEeCCCCCCcccchhhhhhhcC-CCCCcEEEEEeCCH-------HHHHHhCCcCeeeCCCCChHHHHHHHHHHhhcc
Q 003300 288 FFLVLDDVWDGDYKKWDPFFSCLKN-GHHESKILITTRDR-------SVALQLGSIDIIPVKELGEGECCLLFKQIAFLR 359 (832)
Q Consensus 288 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~-------~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 359 (832)
-++++||++.-.. ..+...+.. ...|..||+|++.. ++...+.....+++++++.++-..++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788999942211 122222221 13466789988743 233344555689999999999888888876432
Q ss_pred CCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 360 RSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 360 ~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
+ -.-.+++..-|++.+.|---.+
T Consensus 164 ~----l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 S----VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred C----CCCCHHHHHHHHHHccCCHHHH
Confidence 1 1223667788888888765443
No 141
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.83 E-value=0.00027 Score=84.09 Aligned_cols=152 Identities=19% Similarity=0.148 Sum_probs=87.4
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc-c----C-CeeEEEEeCCCccHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR-N----F-EKVIWVCVSDTFEGIRV 254 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~----f-~~~~wv~~~~~~~~~~~ 254 (832)
.++||++++++++++|... ...-+.++|.+|+|||++|+.++.. +.. . . ...+|. .+...+
T Consensus 180 ~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~--i~~~~vp~~l~~~~i~~-----l~~~~l 246 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQR--IVNRDVPDILEDKLVIT-----LDIGLL 246 (821)
T ss_pred CCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEE-----eeHHHH
Confidence 4899999999999999764 2345679999999999999999873 221 1 1 234442 111111
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCCCC-----cc--cchh-hhhhhcCCCCCcEEEEEeCC
Q 003300 255 AKAIIEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWDGD-----YK--KWDP-FFSCLKNGHHESKILITTRD 325 (832)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----~~--~~~~-l~~~l~~~~~gs~iivTtr~ 325 (832)
+ ... ....+.++....+.+.+ +.++.+|++|+++.-- .. .... +...+.. ..-++|.+|..
T Consensus 247 ~-------ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~ 316 (821)
T CHL00095 247 L-------AGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTL 316 (821)
T ss_pred h-------ccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCH
Confidence 1 111 11223333333333333 3568899999995310 01 1122 2222221 23456667765
Q ss_pred HHHHHH-------hCCcCeeeCCCCChHHHHHHHHHH
Q 003300 326 RSVALQ-------LGSIDIIPVKELGEGECCLLFKQI 355 (832)
Q Consensus 326 ~~~~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 355 (832)
.+.... ......+.+...+.++...++...
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 554321 123457889999999988887653
No 142
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00071 Score=76.09 Aligned_cols=191 Identities=11% Similarity=0.062 Sum_probs=111.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|-+..++.+..++.... -...+.++|..|+||||+|+.+++..--...... ..+....+- +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 468999999999999887532 3457889999999999999999874211110000 000000000 0110
Q ss_pred HH--hC---CCCCCCCcHHHHHHHH---HH-HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCC-HHHH
Q 003300 260 EG--LG---VSASGLSEFESLMKQI---QE-YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRD-RSVA 329 (832)
Q Consensus 260 ~~--l~---~~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~ 329 (832)
.. .. .........+++.+.. .. -..+++-++|+|+++.-+...+..+...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00 00 0000011222222221 11 12356668999999776656677777777665556666666544 3333
Q ss_pred HH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 330 LQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 330 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
.. ......+++.+++.++....+.+.+...+. .-..+.+..|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 22 233567899999999998888887654322 223566778999999987543
No 143
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=6.7e-07 Score=86.81 Aligned_cols=177 Identities=16% Similarity=0.185 Sum_probs=106.6
Q ss_pred CcEEecCCCccc--cccccCCCCceeEEEeCCcCcc-cccccccCCCcccEEeccCccCccccC--cccccccCCceeec
Q 003300 463 SPFRLHSNLIRE--IPKNVGKLIHLRYLNLSELGIE-RLPKTLCELYNLQKLDIRRCRNLKELP--AGIGKLKNMRSLLN 537 (832)
Q Consensus 463 r~L~L~~n~l~~--lp~~l~~l~~L~~L~Ls~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~l 537 (832)
++|||++..++. +..-+++|..|+.|+|.++.+. .+-..+.+-.+|+.|+|++|+.+.+.. .-+.+|+.|..|++
T Consensus 188 q~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl 267 (419)
T KOG2120|consen 188 QHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL 267 (419)
T ss_pred HHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc
Confidence 577777776653 4455677888888888888776 455567777788888888887665432 22567777777877
Q ss_pred CCccCcccccCC-CCC-CCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCc
Q 003300 538 GETYSLKYMPVG-ISK-LTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLR 615 (832)
Q Consensus 538 ~~~~~~~~~p~~-l~~-L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~ 615 (832)
+.|......-.. +.+ -..|.. +++++....-.... ...-...+++|..
T Consensus 268 sWc~l~~~~Vtv~V~hise~l~~-----------------------------LNlsG~rrnl~~sh-~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 268 SWCFLFTEKVTVAVAHISETLTQ-----------------------------LNLSGYRRNLQKSH-LSTLVRRCPNLVH 317 (419)
T ss_pred hHhhccchhhhHHHhhhchhhhh-----------------------------hhhhhhHhhhhhhH-HHHHHHhCCceee
Confidence 777443221100 000 012222 22332211101111 1112457889999
Q ss_pred eEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCch---hccccCCcEEEEeccC
Q 003300 616 LRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKW---LTSLTNLRNLYLRSCV 683 (832)
Q Consensus 616 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~---l~~l~~L~~L~L~~~~ 683 (832)
|+++.|... ....+..+..++.|++|+++.|-... |.. +...|+|.+|++.+|-
T Consensus 318 LDLSD~v~l-------------~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 LDLSDSVML-------------KNDCFQEFFKFNYLQHLSLSRCYDII-PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ecccccccc-------------CchHHHHHHhcchheeeehhhhcCCC-hHHeeeeccCcceEEEEecccc
Confidence 999887642 23455667778888888888876532 433 3367888899888884
No 144
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.00045 Score=75.77 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=93.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccC--CeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
..-+.|+|..|+|||+|++++++. ....+ ..++|++. .++...+...+... ..+ .+.+..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 445999999999999999999984 33332 24677654 34555555554321 112 2333333
Q ss_pred CCceEEEEeCCCCCCc-ccc-hhhhhhhcC-CCCCcEEEEEeC-CHHHH--------HHhCCcCeeeCCCCChHHHHHHH
Q 003300 285 GKKFFLVLDDVWDGDY-KKW-DPFFSCLKN-GHHESKILITTR-DRSVA--------LQLGSIDIIPVKELGEGECCLLF 352 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr-~~~~~--------~~~~~~~~~~l~~L~~~~~~~lf 352 (832)
.+.-+|++||+..... ..+ +.+...+.. ...|..||+||. .+.-. ..+.....+.+++.+.++-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 4556899999964311 111 223333222 123446888874 33221 12233457899999999999999
Q ss_pred HHHhhccCCCCCccchHHHHHHHHHHcCCChhH
Q 003300 353 KQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
.+.+..... .-.+++...|++.+.|.--.
T Consensus 273 ~~~~~~~~~----~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 273 RKMLEIEHG----ELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHhcCC----CCCHHHHHHHHhccccCHHH
Confidence 988753221 22356778888888876433
No 145
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.79 E-value=0.00091 Score=74.21 Aligned_cols=181 Identities=14% Similarity=0.109 Sum_probs=104.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccC--CeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 283 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 283 (832)
....+.|+|..|+|||+|++++++. ....+ ..+++++.. ++...+...+... .. ..+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHH
Confidence 3456899999999999999999984 43333 245666543 2333344443211 11 2233333
Q ss_pred cCCceEEEEeCCCCCCccc-c-hhhhhhhcC-CCCCcEEEEEeCCHH---------HHHHhCCcCeeeCCCCChHHHHHH
Q 003300 284 MGKKFFLVLDDVWDGDYKK-W-DPFFSCLKN-GHHESKILITTRDRS---------VALQLGSIDIIPVKELGEGECCLL 351 (832)
Q Consensus 284 ~~k~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~~---------~~~~~~~~~~~~l~~L~~~~~~~l 351 (832)
+ +.-+||+||++...... + +.+...+.. ...|..||+||.... +...+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 34489999996532211 1 223332222 123445888876432 122333445799999999999999
Q ss_pred HHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHH----HHHHH---hcCCCCHHHHHHHHhh
Q 003300 352 FKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAK----VIGNL---LRSKSTVKEWQRILES 408 (832)
Q Consensus 352 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~----~~~~~---l~~~~~~~~w~~~~~~ 408 (832)
+.+.+.... ..-.+++...|++.+.|..-.+. .+..+ ....-+.+..+.++..
T Consensus 289 l~~~~~~~~----~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 289 LKKKAEEEG----IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHHHHHcC----CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 999875422 12235677888998888765432 22221 1122356666676664
No 146
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.77 E-value=7.1e-06 Score=81.95 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=40.3
Q ss_pred hcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCC-----CCchhccccCCcEEEE
Q 003300 605 LQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNI-----FPKWLTSLTNLRNLYL 679 (832)
Q Consensus 605 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~l~~l~~L~~L~L 679 (832)
..+...+.|+.+.+..|.+..- ........+..+++|+.|+|..|.... +-..++.+++|+.|++
T Consensus 179 ~~~~~~~~leevr~~qN~I~~e----------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPE----------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred HHHHhccccceEEEecccccCc----------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 3445556677777766665321 122344566666777777777766533 1233445667777888
Q ss_pred eccC
Q 003300 680 RSCV 683 (832)
Q Consensus 680 ~~~~ 683 (832)
++|.
T Consensus 249 ~dcl 252 (382)
T KOG1909|consen 249 GDCL 252 (382)
T ss_pred cccc
Confidence 7774
No 147
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.0011 Score=74.75 Aligned_cols=190 Identities=15% Similarity=0.122 Sum_probs=107.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+++..-....-+ ...+..-..-+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 469999999999999987642 345677899999999999998876311000000 00000000111111
Q ss_pred HHhCC-----CCCCCCcHHH---HHHHHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeC-CHHHH
Q 003300 260 EGLGV-----SASGLSEFES---LMKQIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTR-DRSVA 329 (832)
Q Consensus 260 ~~l~~-----~~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~~~ 329 (832)
..... ........++ +...+... ..+++-++|+|+++.-....+..+...+........+|++|. ...+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 10000 0000111222 22221111 135566889999976555566667666655444555555554 33333
Q ss_pred HH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhH
Q 003300 330 LQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 330 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
.. ......+.+.+++.++....+...+...+. .-..+.+..|++.++|.+..
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 22 233567899999999998888877643321 12245677889999987754
No 148
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.76 E-value=0.00021 Score=77.27 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=97.6
Q ss_pred CceecchhhHHHHHHHHhccCCC-------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGE-------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|+++.++++.+.+..+-.. .....+-|.++|.+|+|||++|+++++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 46899999999998876431110 0124567899999999999999999973 2222 222211 1
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCCCC-----------cccchhhhhhhcC-----CCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWDGD-----------YKKWDPFFSCLKN-----GHH 315 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~-----~~~ 315 (832)
.+. .... .+.......+.+.. ...+.+|++|+++.-- .+....+...+.. ...
T Consensus 200 ~l~----~~~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 ELV----QKFI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHh----Hhhc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111 1100 01112222222222 3467899999995420 0111123332211 123
Q ss_pred CcEEEEEeCCHHHHHH-h-C---CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC
Q 003300 316 ESKILITTRDRSVALQ-L-G---SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL 382 (832)
Q Consensus 316 gs~iivTtr~~~~~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 382 (832)
+..||.||........ + . -...+.+++.+.++-.++|..+...... ..... ...+++.+.|+
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 5667888876433221 1 1 1357999999999999999987643322 11122 35667777765
No 149
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.76 E-value=0.0008 Score=69.29 Aligned_cols=134 Identities=12% Similarity=0.065 Sum_probs=72.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCce
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKF 288 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 288 (832)
-+.++|.+|+|||++|+.++......+.....-|+.++. .++ ...+.+.. .......+.+ . ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~-a--~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKR-A--MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHH-c--cCc
Confidence 588999999999999988876321111111112443331 122 22221111 1112222222 2 235
Q ss_pred EEEEeCCCCC---------CcccchhhhhhhcCCCCCcEEEEEeCCHHHHHHhC--------CcCeeeCCCCChHHHHHH
Q 003300 289 FLVLDDVWDG---------DYKKWDPFFSCLKNGHHESKILITTRDRSVALQLG--------SIDIIPVKELGEGECCLL 351 (832)
Q Consensus 289 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~--------~~~~~~l~~L~~~~~~~l 351 (832)
+|++|++..- ..+.++.+...+.....+.+||+++.......... ....+++++++.+|-..+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999522 01123344555544445566777765433322111 135799999999999999
Q ss_pred HHHHhhc
Q 003300 352 FKQIAFL 358 (832)
Q Consensus 352 f~~~~~~ 358 (832)
+...+..
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 9887643
No 150
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.0015 Score=72.90 Aligned_cols=156 Identities=14% Similarity=0.125 Sum_probs=93.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccC--CeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
...+.|+|..|.|||.|++++++. ....+ ..+++++. .++...+...+... . ...+.+.++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~----~~~f~~~y~ 376 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----K----GDSFRRRYR 376 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----c----HHHHHHHhh
Confidence 345899999999999999999984 33222 34566653 33444444333211 1 122333333
Q ss_pred CCceEEEEeCCCCCCcc-cch-hhhhhhcC-CCCCcEEEEEeCCH---------HHHHHhCCcCeeeCCCCChHHHHHHH
Q 003300 285 GKKFFLVLDDVWDGDYK-KWD-PFFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELGEGECCLLF 352 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~gs~iivTtr~~---------~~~~~~~~~~~~~l~~L~~~~~~~lf 352 (832)
. .=+|||||+...... .|. .|...+.. ...|..|||||+.. .+...+...-.+++++.+.+.-..++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 347889999654222 222 23333332 22355688888752 23334455668999999999999999
Q ss_pred HHHhhccCCCCCccchHHHHHHHHHHcCCChh
Q 003300 353 KQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL 384 (832)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 384 (832)
.+.+....- .-.+++..-|++.+.+..-
T Consensus 456 ~kka~~r~l----~l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 456 RKKAVQEQL----NAPPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHhcCC----CCCHHHHHHHHHhccCCHH
Confidence 988754322 2235667777777776543
No 151
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.0013 Score=68.49 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=112.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhh-------------hccCCeeEEEEeC
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEV-------------KRNFEKVIWVCVS 246 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~ 246 (832)
.+++|.+..++.+...+.... -.....++|..|+||+++|..+++..-- ...++-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 358899999999999886542 3478899999999999999887763110 1122334554321
Q ss_pred CCccHHHHHHHHHHHhCC--CCCCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEE
Q 003300 247 DTFEGIRVAKAIIEGLGV--SASGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 319 (832)
Q Consensus 247 ~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 319 (832)
...+....-..-++..+. .....-.++++ ..+.+++ .+++-++|+|+++.-+......+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000000111112211 11112223332 2344443 3566789999996655555666777776544 4456
Q ss_pred EEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHH
Q 003300 320 LITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 320 ivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 388 (832)
|++|.+. .+... .+....+.+.+++.++..+.+.+..... ........++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-------~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-------ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-------cchhHHHHHHHHcCCCHHHHHH
Confidence 6555443 33333 2446789999999999999998864211 1111135788999999965543
No 152
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=6.5e-06 Score=90.39 Aligned_cols=33 Identities=27% Similarity=0.109 Sum_probs=21.6
Q ss_pred ccEEEEEeeCCCCCCchhccccCCcEEEEeccC
Q 003300 651 VEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 651 L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~ 683 (832)
|+.+++.++....++..+..+.++..|++.++.
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcc
Confidence 666666666666555555666777777777664
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.71 E-value=0.00048 Score=82.34 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=85.8
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc------CCeeEE-EEeCCCccHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEKVIW-VCVSDTFEGIR 253 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~~~~~~~~~ 253 (832)
.++||+.++++++..|... ....+.++|.+|+|||++|+.++.. +... ....+| ++++ .
T Consensus 174 ~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l~~~------~ 239 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLALDMG------A 239 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEeeHH------H
Confidence 5999999999999999764 3345568999999999999998873 2221 122333 2211 1
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-c-CCceEEEEeCCCCCC-----cc--cchhhhhhhcCCCCCcEEEEEeC
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYI-M-GKKFFLVLDDVWDGD-----YK--KWDPFFSCLKNGHHESKILITTR 324 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~-----~~--~~~~l~~~l~~~~~gs~iivTtr 324 (832)
+. . ......+.+.....+...+ + +++.+|++|+++.-. .. +...+..+... ...-++|-+|.
T Consensus 240 l~----a----~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt 310 (852)
T TIGR03346 240 LI----A----GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATT 310 (852)
T ss_pred Hh----h----cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCc
Confidence 11 0 0001112333333333333 2 468999999996421 00 11112111111 12245666666
Q ss_pred CHHHHHH-------hCCcCeeeCCCCChHHHHHHHHHHh
Q 003300 325 DRSVALQ-------LGSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 325 ~~~~~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
....... ......+.+...+.++...++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 5543221 1224578899999999999887654
No 154
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0014 Score=68.56 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=66.8
Q ss_pred CCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH-HHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCC
Q 003300 285 GKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS-VALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSF 362 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 362 (832)
+++-++|+|+++.-+......+...+.....++.+|++|.+.. +... .+....+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 4444567899977666677778777776666777888887653 3322 344678999999999999888765311
Q ss_pred CCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 363 EDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 363 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
...+.+..++..++|.|.....+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 11344567788999999755433
No 155
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.69 E-value=0.00014 Score=65.69 Aligned_cols=96 Identities=22% Similarity=0.156 Sum_probs=52.8
Q ss_pred EEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC-Cce
Q 003300 210 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG-KKF 288 (832)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~ 288 (832)
|.|+|.+|+|||++|+.+++. .. ...+.++.+.-.+. ......+.+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~---~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LG---FPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TT---SEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cc---cccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999983 22 12345543321100 1111222223333332223 379
Q ss_pred EEEEeCCCCCCccc-----------chhhhhhhcCCC---CCcEEEEEeCC
Q 003300 289 FLVLDDVWDGDYKK-----------WDPFFSCLKNGH---HESKILITTRD 325 (832)
Q Consensus 289 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtr~ 325 (832)
+|++||++.-.... ...+...+.... ....||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996543332 344444444422 23567777775
No 156
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.67 E-value=4.4e-05 Score=53.08 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.0
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPK 500 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~ 500 (832)
+++|++++|+++.+|..+++|++|++|++++|.|+.+|.
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 367899999999999989999999999999999987754
No 157
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.64 E-value=0.0027 Score=66.83 Aligned_cols=212 Identities=15% Similarity=0.126 Sum_probs=128.5
Q ss_pred chhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHH-HHHHcChhhhccCCeeEEEEeCCCcc---HHHHHHHHHH
Q 003300 185 RVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEKVIWVCVSDTFE---GIRVAKAIIE 260 (832)
Q Consensus 185 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~~~---~~~~~~~i~~ 260 (832)
|.+.++++..||....+ ..|.|.|+-|+||++|+ .++..+ .+.++.++|.+-.. -..+...++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHH
Confidence 66788999999987643 58999999999999999 777753 23377777654322 2344455555
Q ss_pred HhCC-----------------------CCCC--CCcHHHHHHHHH---HHH-----------------------c---CC
Q 003300 261 GLGV-----------------------SASG--LSEFESLMKQIQ---EYI-----------------------M---GK 286 (832)
Q Consensus 261 ~l~~-----------------------~~~~--~~~~~~~~~~l~---~~l-----------------------~---~k 286 (832)
++|- ...+ .....++.+.+. ..| . .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 4432 1111 111222222111 111 0 23
Q ss_pred ceEEEEeCCCCCCcc---cchhhhhhhc--CCCCCcEEEEEeCCHHHHHHh------CCcCeeeCCCCChHHHHHHHHHH
Q 003300 287 KFFLVLDDVWDGDYK---KWDPFFSCLK--NGHHESKILITTRDRSVALQL------GSIDIIPVKELGEGECCLLFKQI 355 (832)
Q Consensus 287 ~~LlVlDdv~~~~~~---~~~~l~~~l~--~~~~gs~iivTtr~~~~~~~~------~~~~~~~l~~L~~~~~~~lf~~~ 355 (832)
+-+||+||.-..... .|+.+..... ...+-.+||++|-+......+ .....+.+...+.+.|..+....
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 679999998443211 1233322211 134566899998875444432 22468899999999999999988
Q ss_pred hhccCCC------------CCc----cchHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHH-HHHHHHhh
Q 003300 356 AFLRRSF------------EDR----EKLEPMGRKIAHKCKGLPLAAKVIGNLLRSKSTVK-EWQRILES 408 (832)
Q Consensus 356 ~~~~~~~------------~~~----~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~-~w~~~~~~ 408 (832)
....... ... .....-....++.+||=-.-+..+++.++...+++ .-+++.++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7543110 000 12344456778899999999999999999887653 33444443
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.61 E-value=0.001 Score=77.34 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=87.9
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc-----CCeeEEEEeCCCccHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN-----FEKVIWVCVSDTFEGIRVA 255 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~ 255 (832)
.++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++... .... .+..+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH-
Confidence 48999999999999997642 2345689999999999999998631 1111 13344421 11111
Q ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCCC------C--cccchhhhhhhcCCCCCcEEEEEeCCH
Q 003300 256 KAIIEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWDG------D--YKKWDPFFSCLKNGHHESKILITTRDR 326 (832)
Q Consensus 256 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~------~--~~~~~~l~~~l~~~~~gs~iivTtr~~ 326 (832)
+. ......+.+.....+...+ +.++.+|++|+++.- . ..+...+..++... ..-++|-+|...
T Consensus 254 ---la----G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 254 ---LA----GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred ---hc----ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 10 1111122333333333333 356789999999541 1 11222222222221 234566666554
Q ss_pred HHHHH-------hCCcCeeeCCCCChHHHHHHHHHHh
Q 003300 327 SVALQ-------LGSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 327 ~~~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
+.... ......+.+++++.+++..++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 43211 1224589999999999999998654
No 159
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.60 E-value=0.0024 Score=70.31 Aligned_cols=207 Identities=13% Similarity=0.090 Sum_probs=124.9
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChh---hhccCCe--eEEEEeCCCccHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDE---VKRNFEK--VIWVCVSDTFEGIRV 254 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f~~--~~wv~~~~~~~~~~~ 254 (832)
..+-+|+.+..+|...+...-.. ......+.|.|.+|.|||..++.|.+... .++.-.. .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 34678999999998888764431 23456999999999999999999998532 1222222 334444455568999
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHc-----CCceEEEEeCCCCCCcccchhhhhhhcC-CCCCcEEEEEeCCH--
Q 003300 255 AKAIIEGLGVSASGLSEFESLMKQIQEYIM-----GKKFFLVLDDVWDGDYKKWDPFFSCLKN-GHHESKILITTRDR-- 326 (832)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~-- 326 (832)
+..|..++.+... ......+.+..++. .+..++++|+++.--...-+.+...|.| ..++||++|.+--.
T Consensus 475 Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 9999999987532 23444555555553 4568888898733211233456667777 56788877765311
Q ss_pred ---------HHHHHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHH
Q 003300 327 ---------SVALQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNL 392 (832)
Q Consensus 327 ---------~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 392 (832)
.+...++ ...+...|-+.++-.++...+..+... ......+=++++++...|-.=.|+.+.-++
T Consensus 552 dlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1111111 245677777877777777766543322 122223334455555555544444444433
No 160
>PRK08116 hypothetical protein; Validated
Probab=97.60 E-value=0.00034 Score=71.25 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=60.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKK 287 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 287 (832)
..+.++|..|+|||.||.++++. .......+++++ ..+++..+........ ..+.. .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCCC
Confidence 35889999999999999999984 333334566665 3345555554443211 11122 2333344333
Q ss_pred eEEEEeCCCCCCcccchh--hhhhhcC-CCCCcEEEEEeCCH
Q 003300 288 FFLVLDDVWDGDYKKWDP--FFSCLKN-GHHESKILITTRDR 326 (832)
Q Consensus 288 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 326 (832)
||||||+..+....|.. +...+.. ...+..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995543344533 4433332 23456799999754
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.54 E-value=0.0013 Score=78.39 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=85.0
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC------C-eeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF------E-KVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~-~~~wv~~~~~~~~~ 252 (832)
..++||+.+++++++.|... ...-+.++|.+|+|||++|+.++.. ..... . .+++++++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~l~l~~----- 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGA----- 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEEEehhh-----
Confidence 35999999999999999764 3345679999999999999999873 22111 2 233332221
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH--cCCceEEEEeCCCCCCc-----c--cchh-hhhhhcCCCCCcEEEEE
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYI--MGKKFFLVLDDVWDGDY-----K--KWDP-FFSCLKNGHHESKILIT 322 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~-----~--~~~~-l~~~l~~~~~gs~iivT 322 (832)
+. . ......+.+.....+...+ .+++.+|++|+++.-.. . +-.. +...+. ...-++|-+
T Consensus 245 -l~----a----g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~Iga 313 (857)
T PRK10865 245 -LV----A----GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGA 313 (857)
T ss_pred -hh----h----ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEc
Confidence 10 0 0001112222222222222 25789999999954210 0 1112 222222 123456666
Q ss_pred eCCHHHHHHh-------CCcCeeeCCCCChHHHHHHHHHHh
Q 003300 323 TRDRSVALQL-------GSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 323 tr~~~~~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
|...+....+ .....+.+...+.++...++....
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 6655432111 123467777778999988887654
No 162
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.53 E-value=0.00049 Score=62.98 Aligned_cols=87 Identities=22% Similarity=0.103 Sum_probs=47.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC-
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK- 286 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 286 (832)
..+.|+|.+|+||||+|+.++.. .......++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999984 2222224666655443322211111 111111111222222333444444433
Q ss_pred ceEEEEeCCCCC
Q 003300 287 KFFLVLDDVWDG 298 (832)
Q Consensus 287 ~~LlVlDdv~~~ 298 (832)
..+|++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999664
No 163
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.53 E-value=0.0006 Score=73.77 Aligned_cols=204 Identities=15% Similarity=0.090 Sum_probs=106.3
Q ss_pred CceecchhhHHHHHHHHhccCC-------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG-------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|.+..++++.+.+.-.-. -.-...+.+.++|.+|+|||++|+++++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 4578899988888887642110 00124456889999999999999999983 33333 2221111
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCC--------cc--c-chhhhhh---hcC--CCCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGD--------YK--K-WDPFFSC---LKN--GHHE 316 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~--~-~~~l~~~---l~~--~~~g 316 (832)
+.. .... .....+...+.....+.+.+|++|+++..- .. . ...+... +.. ...+
T Consensus 253 -L~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 1000 011111222222234567899999974310 00 0 0112222 211 1345
Q ss_pred cEEEEEeCCHHHHHHh-----CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC-hhHHHHH-
Q 003300 317 SKILITTRDRSVALQL-----GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL-PLAAKVI- 389 (832)
Q Consensus 317 s~iivTtr~~~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~- 389 (832)
.+||+||...+..... .....+.+...+.++..++|..+...... .....+ ..++..+.|+ +-.|..+
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-~~dvdl----~~la~~t~g~sgAdI~~i~ 397 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-AEDVDL----EEFIMAKDELSGADIKAIC 397 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-CcCcCH----HHHHHhcCCCCHHHHHHHH
Confidence 6788888865544331 11457899999999999999987643321 122223 4555555554 3223322
Q ss_pred --HHHh--cCC---CCHHHHHHHHhh
Q 003300 390 --GNLL--RSK---STVKEWQRILES 408 (832)
Q Consensus 390 --~~~l--~~~---~~~~~w~~~~~~ 408 (832)
|+.+ +.. -+.+++..+++.
T Consensus 398 ~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 398 TEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 3222 222 145666666554
No 164
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=7e-05 Score=73.13 Aligned_cols=67 Identities=16% Similarity=0.065 Sum_probs=44.8
Q ss_pred CCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCC--CchhccccCCcEEEEeccCCCCc
Q 003300 610 QQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIF--PKWLTSLTNLRNLYLRSCVKCEH 687 (832)
Q Consensus 610 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--p~~l~~l~~L~~L~L~~~~~~~~ 687 (832)
.+++..+.+..|.+.+ ..-..+..+++.+.-|.+..+++... -+.+..++.|+.|.+++++.++.
T Consensus 198 Fpnv~sv~v~e~PlK~-------------~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKT-------------ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cccchheeeecCcccc-------------hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 4677777777776532 22234566777777777777765443 23355899999999999987765
Q ss_pred CC
Q 003300 688 LP 689 (832)
Q Consensus 688 l~ 689 (832)
+.
T Consensus 265 l~ 266 (418)
T KOG2982|consen 265 LR 266 (418)
T ss_pred cc
Confidence 44
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.003 Score=71.96 Aligned_cols=133 Identities=18% Similarity=0.320 Sum_probs=83.1
Q ss_pred ceecchhhHHHHHHHHhccCC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC---CeeEEEEeCCCccHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFEGIRV 254 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~ 254 (832)
.++|-++.++.+.+.+..... ..+....+....|+.|||||.||++++. .-| +..+-++.|.-.....
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~DMSEy~EkHs- 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRIDMSEYMEKHS- 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceeechHHHHHHHH-
Confidence 588888888888877764322 1233567788899999999999999986 234 3455554443222221
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCce-EEEEeCCCCCCcccchhhhhhhcCC----CC-------CcEEEEE
Q 003300 255 AKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKF-FLVLDDVWDGDYKKWDPFFSCLKNG----HH-------ESKILIT 322 (832)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~----~~-------gs~iivT 322 (832)
+.+-+|.++.-. -.++ ...|.+..+.++| +|.||++...+++.++.|...+.++ +. .+-||+|
T Consensus 566 ---VSrLIGaPPGYV-Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImT 640 (786)
T COG0542 566 ---VSRLIGAPPGYV-GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMT 640 (786)
T ss_pred ---HHHHhCCCCCCc-eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEe
Confidence 112223332111 1111 2345566677877 8889999888888888888888764 22 3446777
Q ss_pred eC
Q 003300 323 TR 324 (832)
Q Consensus 323 tr 324 (832)
|.
T Consensus 641 SN 642 (786)
T COG0542 641 SN 642 (786)
T ss_pred cc
Confidence 75
No 166
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.0012 Score=69.81 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=83.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
....+.|+|..|.|||.|++++.+ ...........++++ .+......+..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 567899999999999999999999 444445433333332 23333333333321 1133444444
Q ss_pred CceEEEEeCCCCCCc-ccchh-hhhhhcC-CCCCcEEEEEeCC---------HHHHHHhCCcCeeeCCCCChHHHHHHHH
Q 003300 286 KKFFLVLDDVWDGDY-KKWDP-FFSCLKN-GHHESKILITTRD---------RSVALQLGSIDIIPVKELGEGECCLLFK 353 (832)
Q Consensus 286 k~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtr~---------~~~~~~~~~~~~~~l~~L~~~~~~~lf~ 353 (832)
.-=++++||++.-.. +.|+. +...|.. ...|-.||+|++. +.+...+...-.+++++.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 334889999965321 12222 3333322 1234479999964 3444455666789999999999999999
Q ss_pred HHhhcc
Q 003300 354 QIAFLR 359 (832)
Q Consensus 354 ~~~~~~ 359 (832)
+.+...
T Consensus 255 kka~~~ 260 (408)
T COG0593 255 KKAEDR 260 (408)
T ss_pred HHHHhc
Confidence 866543
No 167
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.001 Score=75.15 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=40.3
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.+++|-++.++++..++....- .....+++.|+|.+|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999876432 1123468999999999999999999974
No 168
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.43 E-value=2.4e-05 Score=85.99 Aligned_cols=99 Identities=25% Similarity=0.335 Sum_probs=69.8
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
..|++.+|.+..+...+..+.+|++|++++|.|+.+.. +..+..|+.|++.+|. +..++. +..+++|+.+++++|.+
T Consensus 98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 98 EALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDISG-LESLKSLKLLDLSYNRI 174 (414)
T ss_pred eeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhccC-CccchhhhcccCCcchh
Confidence 45677778887776657788888888888888887743 6777788888888876 444433 56688888888888854
Q ss_pred cccccCC-CCCCCCCccCCceeeCCc
Q 003300 543 LKYMPVG-ISKLTSLRTLDKFVVGGG 567 (832)
Q Consensus 543 ~~~~p~~-l~~L~~L~~L~~~~~~~~ 567 (832)
...-+ . +..+.+|+.+. +.+|.
T Consensus 175 ~~ie~-~~~~~~~~l~~l~--l~~n~ 197 (414)
T KOG0531|consen 175 VDIEN-DELSELISLEELD--LGGNS 197 (414)
T ss_pred hhhhh-hhhhhccchHHHh--ccCCc
Confidence 43322 1 46677777776 55554
No 169
>PRK10536 hypothetical protein; Provisional
Probab=97.40 E-value=0.003 Score=62.36 Aligned_cols=135 Identities=13% Similarity=0.192 Sum_probs=75.7
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe----CC-----Ccc
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV----SD-----TFE 250 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~-----~~~ 250 (832)
..+.+|.........++.. ...+.+.|.+|.|||+||.+++.+.-..+.|+.++.+.- ++ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3467788888888888854 238999999999999999988875323445655544321 11 011
Q ss_pred HHH----HHHHHHHHhCCCCCCCCcHHHHHH----H----HHHHHcCCce---EEEEeCCCCCCcccchhhhhhhcCCCC
Q 003300 251 GIR----VAKAIIEGLGVSASGLSEFESLMK----Q----IQEYIMGKKF---FLVLDDVWDGDYKKWDPFFSCLKNGHH 315 (832)
Q Consensus 251 ~~~----~~~~i~~~l~~~~~~~~~~~~~~~----~----l~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 315 (832)
..+ .+.-+...+..-. +....+.... . =..++++..+ +||+|++.+.+..+ +...+-.-+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~---~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQ---MKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHH---HHHHHhhcCC
Confidence 111 1222222221100 0011111110 0 0135667665 99999997655433 3444444568
Q ss_pred CcEEEEEeCCH
Q 003300 316 ESKILITTRDR 326 (832)
Q Consensus 316 gs~iivTtr~~ 326 (832)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 89999987643
No 170
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=1.2e-05 Score=69.07 Aligned_cols=94 Identities=23% Similarity=0.306 Sum_probs=51.9
Q ss_pred EEecCCCccccccc---cCCCCceeEEEeCCcCcccccccccCC-CcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 465 FRLHSNLIREIPKN---VGKLIHLRYLNLSELGIERLPKTLCEL-YNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 465 L~L~~n~l~~lp~~---l~~l~~L~~L~Ls~~~i~~lp~~~~~l-~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
++|++|.+..+++. +....+|...+|++|.++.+|+.|... +.++.|++++|. +..+|..+..++.|+.|+++.|
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC
Confidence 45555555444332 344555666666666666666555433 356666666644 5566666666666666666666
Q ss_pred cCcccccCCCCCCCCCccCC
Q 003300 541 YSLKYMPVGISKLTSLRTLD 560 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~ 560 (832)
. +...|..+..|.+|-.|+
T Consensus 111 ~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 111 P-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred c-cccchHHHHHHHhHHHhc
Confidence 3 333444444455554444
No 171
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.40 E-value=0.0024 Score=59.64 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=77.9
Q ss_pred cchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh------------------ccCCeeEEEEe
Q 003300 184 GRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK------------------RNFEKVIWVCV 245 (832)
Q Consensus 184 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~~ 245 (832)
|-+...+.+...+.... -...+.++|..|+||+++|..+++..--. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 44556667777665432 34568899999999999998887631111 12233444432
Q ss_pred CCC---ccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEE
Q 003300 246 SDT---FEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILIT 322 (832)
Q Consensus 246 ~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 322 (832)
... ...+++. .+...+.... ..++.=++|+||++.-+.+....+...+......+++|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 2222222 3333322211 1235668899999887777788888888887788999998
Q ss_pred eCCHH-HHHH-hCCcCeeeCCCCC
Q 003300 323 TRDRS-VALQ-LGSIDIIPVKELG 344 (832)
Q Consensus 323 tr~~~-~~~~-~~~~~~~~l~~L~ 344 (832)
|++.. +... .+....+.+.++|
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 88764 2222 3445566666653
No 172
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.34 E-value=0.0022 Score=70.54 Aligned_cols=165 Identities=10% Similarity=0.084 Sum_probs=88.7
Q ss_pred CceecchhhHHHHHHHHhccCC-------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc-----CCeeEEEEeCC
Q 003300 180 GEVCGRVDEKNELLSKLLCESG-------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN-----FEKVIWVCVSD 247 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~ 247 (832)
.++.|.+..++++.+.+..+-. ..-...+-+.++|++|.|||++|+++++. .... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 4578899999888887642110 01123456899999999999999999984 2222 12344554432
Q ss_pred CccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCC-------cccc-----hhhhhhhcC--
Q 003300 248 TFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGD-------YKKW-----DPFFSCLKN-- 312 (832)
Q Consensus 248 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~-- 312 (832)
. ++ +...... .......+.+...+. -.+++.+|+||+++..- .... ..+...+..
T Consensus 260 ~----eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 11 1100000 000111122222221 12578999999996420 0111 123332322
Q ss_pred CCCCcEEEEEeCCHHHHHH-h----CCcCeeeCCCCChHHHHHHHHHHh
Q 003300 313 GHHESKILITTRDRSVALQ-L----GSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 313 ~~~gs~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
...+..||.||........ + .-...|++...+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 1234445666655433221 1 114468999999999999999886
No 173
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.34 E-value=0.0064 Score=62.02 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=73.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH------------HHhCCCCCCCCcHHHHH
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII------------EGLGVSASGLSEFESLM 276 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~------------~~l~~~~~~~~~~~~~~ 276 (832)
-+.+.|.+|+|||++|+.++. ... ...+++++....+..+++.... ....... ...+..-.-
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLE-DIVRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhh-cccceeecC
Confidence 467999999999999999986 222 2345666666655554442210 0000000 000000000
Q ss_pred HHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCC----------------CCCcEEEEEeCCHHHH-------HHhC
Q 003300 277 KQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNG----------------HHESKILITTRDRSVA-------LQLG 333 (832)
Q Consensus 277 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iivTtr~~~~~-------~~~~ 333 (832)
..+....+ +...+++|++...+.+....+...+..+ .++.+||+|+....-. ....
T Consensus 97 g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 97 NRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred chHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 01111122 3468899999776655555555544321 1356888888753211 0111
Q ss_pred CcCeeeCCCCChHHHHHHHHHH
Q 003300 334 SIDIIPVKELGEGECCLLFKQI 355 (832)
Q Consensus 334 ~~~~~~l~~L~~~~~~~lf~~~ 355 (832)
....+.+...+.++-.+++...
T Consensus 176 R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 176 RLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred hcEEEECCCCCHHHHHHHHHHh
Confidence 2235666666777666776665
No 174
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.34 E-value=0.0026 Score=68.78 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=74.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCce
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKF 288 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 288 (832)
++.|.|+-++||||+++.+... .... .+++...+......-+.+. ...+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 9999999999999999766652 1111 5555433321111101111 1111111112778
Q ss_pred EEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHHH------hCCcCeeeCCCCChHHHHHHH
Q 003300 289 FLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVALQ------LGSIDIIPVKELGEGECCLLF 352 (832)
Q Consensus 289 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~------~~~~~~~~l~~L~~~~~~~lf 352 (832)
.|+||.|.. ...|......+.+.++. +|++|+-+...... .|....+++-||+..|...+.
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999954 47798888888776655 88888876544432 234668999999999987643
No 175
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.34 E-value=0.0051 Score=66.24 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=106.3
Q ss_pred CceecchhhHHHHHHHHhccCC-------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG-------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|.+..++++.+.+..+-. .+-...+-+.++|.+|.|||++|+++++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------H
Confidence 4688988888888776542110 01124577889999999999999999973 22222 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCC------c----cc----chhhhhhhcC--CCCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGD------Y----KK----WDPFFSCLKN--GHHE 316 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~----~~----~~~l~~~l~~--~~~g 316 (832)
.+.... .+ .....+.+.+.......+.+|++|+++.-- . .. +..+...+.. ...+
T Consensus 214 ~l~~k~---~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFVQKY---LG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHHHHh---cc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111110 01 011112222223334678899999975310 0 01 1112222221 2245
Q ss_pred cEEEEEeCCHHHHHH--h---CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh-hHHHHH-
Q 003300 317 SKILITTRDRSVALQ--L---GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP-LAAKVI- 389 (832)
Q Consensus 317 s~iivTtr~~~~~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~- 389 (832)
..||.||...+.... . .-...+.+...+.++...+|..+...... ....+ ..++++.+.|+- --|+.+
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~dvd----~~~la~~t~g~sgaDI~~l~ 359 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEEVD----LEDFVSRPEKISAADIAAIC 359 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-CcccC----HHHHHHHcCCCCHHHHHHHH
Confidence 678888876543322 1 12456889988999888888876533221 12222 346667776653 223222
Q ss_pred --HHH--hcCCC---CHHHHHHHHhhh
Q 003300 390 --GNL--LRSKS---TVKEWQRILESE 409 (832)
Q Consensus 390 --~~~--l~~~~---~~~~w~~~~~~~ 409 (832)
|+. ++... +.+++..+++..
T Consensus 360 ~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 360 QEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 222 22221 456666666543
No 176
>PRK12377 putative replication protein; Provisional
Probab=97.30 E-value=0.00069 Score=67.57 Aligned_cols=102 Identities=21% Similarity=0.107 Sum_probs=58.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
...+.++|..|+|||.||.++++. .......++++++. +++..+-..... ..... .+.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-cC
Confidence 357899999999999999999984 33334456776554 344444333211 11111 122222 34
Q ss_pred ceEEEEeCCCCCCcccchh--hhhhhcC-CCCCcEEEEEeCC
Q 003300 287 KFFLVLDDVWDGDYKKWDP--FFSCLKN-GHHESKILITTRD 325 (832)
Q Consensus 287 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 325 (832)
.=|||+||+.......|.. +...+.. ..+.--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5689999995543344543 3333332 1222347888874
No 177
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.009 Score=62.02 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=64.6
Q ss_pred CCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCC
Q 003300 285 GKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSF 362 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 362 (832)
+++-++|+|+++.-+...-..+...+.....++.+|++|... .+... .+....+.+.+++.+++...+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 556689999996655455555666676666677777777654 33333 2346789999999999988886531 0
Q ss_pred CCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 363 EDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 363 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
....+..++..++|.|+.....
T Consensus 187 -----~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 -----SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567899999999865443
No 178
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.20 E-value=0.055 Score=64.35 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=85.0
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.+..+++|.+++...........+++.++|.+|+|||++|+.+++. ....| +-++++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRG--- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcC---
Confidence 358899988888888765321101123458999999999999999999983 33333 2223333223222210
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCccc----chhhhhhhcC--------C-------CCCcEEE
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKK----WDPFFSCLKN--------G-------HHESKIL 320 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~--------~-------~~gs~ii 320 (832)
. .....+ .....+.+.+.+. ...+-+|++|+++...... ...+...+.. . ....-+|
T Consensus 392 -~-~~~~~g-~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 392 -H-RRTYVG-AMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred -C-CCceeC-CCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0 000000 1111222333332 2334488999996543211 1122222211 0 1223344
Q ss_pred EEeCCHHH-HH-HhCCcCeeeCCCCChHHHHHHHHHHh
Q 003300 321 ITTRDRSV-AL-QLGSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 321 vTtr~~~~-~~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
.||..... .. .......+.+.+++.++-..++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55554321 11 12334588999999998888887654
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.014 Score=60.60 Aligned_cols=165 Identities=10% Similarity=0.049 Sum_probs=99.5
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc------------------cCCeeEEEEeCCCcc
Q 003300 189 KNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR------------------NFEKVIWVCVSDTFE 250 (832)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~~~~~~ 250 (832)
.+++...+... .-...+.++|..|+||+++|+.++...--.. ..+-..|+.-..
T Consensus 12 ~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--- 83 (319)
T PRK06090 12 WQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--- 83 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc---
Confidence 44555555432 2356788999999999999998876211000 011122221100
Q ss_pred HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCC
Q 003300 251 GIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRD 325 (832)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 325 (832)
....-.++++.+ +.+.+ .+++=++|+|+++.-+......+...+.....++.+|++|.+
T Consensus 84 ---------------~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 84 ---------------EGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred ---------------CCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 001123344332 23332 245558899999766666677788888776677777777766
Q ss_pred H-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 326 R-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 326 ~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
. .+... .+....+.+.+++.+++.+.+.... . + .+..++..++|.|+.....
T Consensus 148 ~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 148 QKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C--c------hHHHHHHHcCCCHHHHHHH
Confidence 4 34333 3446789999999999988886531 1 1 1346788999999876543
No 180
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.20 E-value=0.022 Score=60.61 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 186 VDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 186 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
+...+.+.+.+..... ....+|+|.|.=|+|||++.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456677777776531 47789999999999999999998874
No 181
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.006 Score=64.43 Aligned_cols=162 Identities=9% Similarity=0.047 Sum_probs=88.8
Q ss_pred ceec-chhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 181 EVCG-RVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 181 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.++| -+..++.+...+... .-.....++|..|+||||+|+.+++..--....... .++.. ..-+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHh
Confidence 3566 555667777776543 235677899999999999998887631101100000 00000 0000000
Q ss_pred HHhC------CCCCCCCcHHHHHHHHHHH----HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH-H
Q 003300 260 EGLG------VSASGLSEFESLMKQIQEY----IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS-V 328 (832)
Q Consensus 260 ~~l~------~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~ 328 (832)
..-. .........+++.+.+... ..+++=++|+|++..-+......+...+.....++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 0000112233333322221 234556789999966555556667777776667777777776543 3
Q ss_pred HHH-hCCcCeeeCCCCChHHHHHHHHH
Q 003300 329 ALQ-LGSIDIIPVKELGEGECCLLFKQ 354 (832)
Q Consensus 329 ~~~-~~~~~~~~l~~L~~~~~~~lf~~ 354 (832)
... ......+++.+++.++..+.+..
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 322 23467899999999999777765
No 182
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.19 E-value=0.0027 Score=63.19 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=58.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
...+.++|.+|+|||+||.++++. ....-..++++++ .++...+-..... ...+.+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 457899999999999999999984 3223345666643 3444444333321 111222 2333344 3
Q ss_pred ceEEEEeCCCCCCcccchh--hhhhhcC-CCCCcEEEEEeCC
Q 003300 287 KFFLVLDDVWDGDYKKWDP--FFSCLKN-GHHESKILITTRD 325 (832)
Q Consensus 287 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 325 (832)
.=+||+||+.......|.. +...+.. ....-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4588999996655555654 3333322 1223348888874
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.18 E-value=0.0071 Score=72.14 Aligned_cols=138 Identities=15% Similarity=0.235 Sum_probs=76.0
Q ss_pred CceecchhhHHHHHHHHhccCC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
..++|.+..++.+...+..... ..+....++.++|..|+|||++|+.+++. .-..-...+.++++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hh---
Confidence 3589999999988888764321 01123357889999999999999999863 211222344454432211 11
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHHHc-CCceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEeC
Q 003300 257 AIIEGLGVSASGLSEFESLMKQIQEYIM-GKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTR 324 (832)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 324 (832)
....+-+..++-...+. ...+...++ ...-+|+||++...+...+..+...+..+. ..+-||+||.
T Consensus 642 -~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 642 -SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred -hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 11222111111111000 112233332 233589999997777777777777664431 1223777887
Q ss_pred C
Q 003300 325 D 325 (832)
Q Consensus 325 ~ 325 (832)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 184
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.18 E-value=1.1e-05 Score=87.86 Aligned_cols=102 Identities=25% Similarity=0.255 Sum_probs=74.5
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
++.|+|++|+++.+. .+..|++|+.|||++|.+..+|.--..-.+|+.|.+++|. +..+ .++.+|.+|+.||+++|.
T Consensus 189 le~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTL-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred hhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhh-hhHHhhhhhhccchhHhh
Confidence 388999999999885 7888999999999999999887632222349999999976 5555 348899999999999984
Q ss_pred Cccccc-CCCCCCCCCccCCceeeCCcc
Q 003300 542 SLKYMP-VGISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 542 ~~~~~p-~~l~~L~~L~~L~~~~~~~~~ 568 (832)
+...-- .-++.|.+|..|+ +-+|.+
T Consensus 266 l~~hseL~pLwsLs~L~~L~--LeGNPl 291 (1096)
T KOG1859|consen 266 LSEHSELEPLWSLSSLIVLW--LEGNPL 291 (1096)
T ss_pred hhcchhhhHHHHHHHHHHHh--hcCCcc
Confidence 432110 1144566777777 666653
No 185
>CHL00176 ftsH cell division protein; Validated
Probab=97.18 E-value=0.0058 Score=69.78 Aligned_cols=207 Identities=17% Similarity=0.142 Sum_probs=107.6
Q ss_pred CceecchhhHHHHHH---HHhccCCC---CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLS---KLLCESGE---QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~---~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.++.|.++..+++.+ .+...... .....+-+.++|++|.|||++|++++.. .. +-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AE-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC-----CCeeeccHH----H
Confidence 457888766555544 44332110 1123456899999999999999999873 22 122322211 1
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCC----------cccchh-hhhhh---cC--CCCCc
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGD----------YKKWDP-FFSCL---KN--GHHES 317 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~-l~~~l---~~--~~~gs 317 (832)
+.. .. .+ .....+...+.+.....+.+|++||++.-. ...+.. +...+ .. ...+.
T Consensus 252 f~~-~~--~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVE-MF--VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHH-Hh--hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 110 00 00 011222333444456778999999995421 011222 22222 11 23455
Q ss_pred EEEEEeCCHHHHHH-h----CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC-hhHHHHHHH
Q 003300 318 KILITTRDRSVALQ-L----GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL-PLAAKVIGN 391 (832)
Q Consensus 318 ~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 391 (832)
.||.||...+.... + .-...+.++..+.++-.++++.++..... ........+++.+.|. +--|..+..
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-----SPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 67777776543322 1 12457888889999999999887643211 1123456788888873 323332221
Q ss_pred ---Hh--c-CC--CCHHHHHHHHhhhcc
Q 003300 392 ---LL--R-SK--STVKEWQRILESEMW 411 (832)
Q Consensus 392 ---~l--~-~~--~~~~~w~~~~~~~~~ 411 (832)
.. + .+ -+.++.+.++++...
T Consensus 398 eAal~a~r~~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 398 EAAILTARRKKATITMKEIDTAIDRVIA 425 (638)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHh
Confidence 11 1 11 245666666665433
No 186
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.18 E-value=0.004 Score=58.93 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=36.7
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.++||-++.++++.-+-.. ++.+-+.|.|++|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 4689999999998776644 3678899999999999998888876
No 187
>PRK08181 transposase; Validated
Probab=97.17 E-value=0.0013 Score=66.55 Aligned_cols=101 Identities=21% Similarity=0.178 Sum_probs=56.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKK 287 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 287 (832)
.-+.++|.+|+|||.||.++++. .......++|+++ .+++..+..... ....+... +.+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l----~~l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAI----AKL-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHH----HHH-hcC
Confidence 45899999999999999999873 3233345666653 345544433211 11222222 222 234
Q ss_pred eEEEEeCCCCCCcccch--hhhhhhcCCCCCcEEEEEeCCH
Q 003300 288 FFLVLDDVWDGDYKKWD--PFFSCLKNGHHESKILITTRDR 326 (832)
Q Consensus 288 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtr~~ 326 (832)
=|||+||+.......+. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999554333332 2444443311123589998854
No 188
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.17 E-value=0.0013 Score=69.40 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=39.7
Q ss_pred hcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCC-CCCCchhccccCCcEEEEeccC
Q 003300 605 LQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGG-NIFPKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 605 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~l~~l~~L~~L~L~~~~ 683 (832)
..+..+.+++.|+++.|.+... . ..+.+|+.|.+.+|.. ..+|..+ .++|++|++++|.
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sL----------------P--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESL----------------P--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCccc----------------C--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcc
Confidence 3456678888888887754321 1 2345788888877554 3445444 2578888888886
Q ss_pred CCCc
Q 003300 684 KCEH 687 (832)
Q Consensus 684 ~~~~ 687 (832)
.+..
T Consensus 106 ~L~s 109 (426)
T PRK15386 106 EISG 109 (426)
T ss_pred cccc
Confidence 4443
No 189
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.16 E-value=0.0008 Score=66.01 Aligned_cols=36 Identities=22% Similarity=0.489 Sum_probs=29.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 245 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 245 (832)
-.++|+|..|+||||++..+.. ...+.|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 4688999999999999998887 46778888877754
No 190
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.14 E-value=0.0054 Score=72.34 Aligned_cols=119 Identities=15% Similarity=0.223 Sum_probs=70.0
Q ss_pred ceecchhhHHHHHHHHhccCCC---CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGE---QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
.++|.++.++.+...+.....+ ......++.++|+.|+|||+||+.++.. . +...+.++.+.-.+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc----
Confidence 4788888888888877643110 1123457889999999999999999973 2 33455665544222111
Q ss_pred HHHHhCCCCC--CCCcHHHHHHHHHHHHcCC-ceEEEEeCCCCCCcccchhhhhhhcC
Q 003300 258 IIEGLGVSAS--GLSEFESLMKQIQEYIMGK-KFFLVLDDVWDGDYKKWDPFFSCLKN 312 (832)
Q Consensus 258 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~ 312 (832)
+..-++.+.. +..... .+.+.++.+ .-+++||+++..+.+.+..+...+..
T Consensus 526 ~~~lig~~~gyvg~~~~~----~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGG----LLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HHHHhcCCCCCcccchhh----HHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111222211 111112 233344333 45999999988777777777776654
No 191
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.13 E-value=0.002 Score=69.59 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=84.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH-
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI- 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i- 258 (832)
..++||++.++.+...+.... -|.|.|.+|+|||++|+.+.........|... -+..+ ++.+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft---tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS---TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---CcHHhcCcHH
Confidence 359999999999999887654 48999999999999999999732222233211 01111 122222211
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHHcC---CceEEEEeCCCCCCcccchhhhhhhcCCC---------CCcEEEEEeCCH
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYIMG---KKFFLVLDDVWDGDYKKWDPFFSCLKNGH---------HESKILITTRDR 326 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~iivTtr~~ 326 (832)
+..... .. .+.+..++ ..-++++|+++.........+...+.... -..++++++.++
T Consensus 88 i~~~~~----~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 88 IQALKD----EG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred Hhhhhh----cC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 111100 00 01111111 12289999999877666666666663211 123566665553
Q ss_pred HHH------HHhCC-cCeeeCCCCChHH-HHHHHHHH
Q 003300 327 SVA------LQLGS-IDIIPVKELGEGE-CCLLFKQI 355 (832)
Q Consensus 327 ~~~------~~~~~-~~~~~l~~L~~~~-~~~lf~~~ 355 (832)
-.. ..+.. .-.+.+++++.++ -..++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 11111 3368889997544 46777653
No 192
>PRK08118 topology modulation protein; Reviewed
Probab=97.12 E-value=0.00025 Score=66.59 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=26.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhh-ccCCeeEE
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIW 242 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 242 (832)
.|.|+|.+|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999853332 45676776
No 193
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.10 E-value=2.6e-05 Score=79.81 Aligned_cols=264 Identities=18% Similarity=0.198 Sum_probs=134.0
Q ss_pred CceeEEEeCCcC---cccccccccCCCcccEEeccCccCccccC--cccccccCCceeecCCccCccccc--CCCCCCCC
Q 003300 483 IHLRYLNLSELG---IERLPKTLCELYNLQKLDIRRCRNLKELP--AGIGKLKNMRSLLNGETYSLKYMP--VGISKLTS 555 (832)
Q Consensus 483 ~~L~~L~Ls~~~---i~~lp~~~~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p--~~l~~L~~ 555 (832)
..|+.|+++++. ...+-....+++++++|.+.+|..++... ..-..+++|++|++..|..++... .....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 568899999886 23444456788999999999998654321 112468899999998876554321 11235667
Q ss_pred CccCCceeeCCccCCCCccCcccc-ccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhh
Q 003300 556 LRTLDKFVVGGGIDGSNTCRLESL-KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRK 634 (832)
Q Consensus 556 L~~L~~~~~~~~~~~~~~~~l~~l-~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 634 (832)
|..|++..... +.+ ..+..+ .....++.+...++...+. +.....-..+..+..+++..+...
T Consensus 218 L~~lNlSwc~q-i~~---~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~l---------- 281 (483)
T KOG4341|consen 218 LKYLNLSWCPQ-ISG---NGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQL---------- 281 (483)
T ss_pred HHHhhhccCch-hhc---CcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccc----------
Confidence 77776322111 110 111110 1111122222222211110 000000111112222222222110
Q ss_pred hhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCC--CCC-Ccc-ccceeccccccceee
Q 003300 635 KEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP--PLG-KLP-LEKLELRNLKSVKRV 710 (832)
Q Consensus 635 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~--~l~-~lp-L~~l~l~~l~~L~~~ 710 (832)
.+..+...-. .+..|+.|+.++|....+.+ .++ .-+ |+++.+..|+.+ +
T Consensus 282 --TD~~~~~i~~-----------------------~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f--s 334 (483)
T KOG4341|consen 282 --TDEDLWLIAC-----------------------GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF--S 334 (483)
T ss_pred --cchHHHHHhh-----------------------hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh--h
Confidence 0111111111 34556666666665443321 111 123 555555555542 2
Q ss_pred CccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCC-----C
Q 003300 711 GNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKAL-----P 785 (832)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----p 785 (832)
.+.++... ..++.|+.|++..|....+-.+ ...-...|.|+.|.++.|..++.. .
T Consensus 335 d~~ft~l~----------------rn~~~Le~l~~e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 335 DRGFTMLG----------------RNCPHLERLDLEECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred hhhhhhhh----------------cCChhhhhhcccccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 22222211 3678888888877754444322 111236899999999999877654 3
Q ss_pred CCCCCCCCcCeEEEcCChhhHHhh
Q 003300 786 DYLLQTTTLQDLTIWKCPILENRY 809 (832)
Q Consensus 786 ~~~~~l~~L~~L~l~~c~~L~~~~ 809 (832)
..-.....|..+.+++||.+++..
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred hccccccccceeeecCCCCchHHH
Confidence 333457889999999999998864
No 194
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.011 Score=65.27 Aligned_cols=166 Identities=14% Similarity=0.193 Sum_probs=89.6
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
+.+-.|.++.+++|.+++.-..-...-+-++++.+|++|||||++|+.++. .....| +-++++.-.+..++-.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkG-- 482 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKG-- 482 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcc--
Confidence 346789999999999988643221234678999999999999999999997 344443 2334555444433210
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCC----------------cccchhhhhhhcC-CCCCcEEEE
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGD----------------YKKWDPFFSCLKN-GHHESKILI 321 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~l~~~l~~-~~~gs~iiv 321 (832)
......+.+. ..+++.+++ .+...-|+.+|.|+... +++-..|...+.+ .-.=|||++
T Consensus 483 ---HRRTYVGAMP-GkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 483 ---HRRTYVGAMP-GKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred ---cceeeeccCC-hHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 0000111111 112222222 23566788899985421 1112222222211 112366655
Q ss_pred EeCCHHHH----HHhCCcCeeeCCCCChHHHHHHHHHHh
Q 003300 322 TTRDRSVA----LQLGSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 322 Ttr~~~~~----~~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
...-..+. ........|++.+-..+|-..+-.++.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 33211111 112335678888888888766555543
No 195
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.09 E-value=0.012 Score=56.41 Aligned_cols=105 Identities=22% Similarity=0.252 Sum_probs=65.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
..++|.+...+.+++--..=.. .....-|.+||.-|+||++|++++.+ .+....-..+-|+-.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k~d------------ 123 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDKED------------ 123 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcHHH------------
Confidence 4689999888888753322111 12345688999999999999999998 4544444433332111
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHH--cCCceEEEEeCCCCC-CcccchhhhhhhcCC
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYI--MGKKFFLVLDDVWDG-DYKKWDPFFSCLKNG 313 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~ 313 (832)
..+.- .|...| ..+||+|..||+-.+ +...+..+...+..+
T Consensus 124 ---------l~~Lp----~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 124 ---------LATLP----DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred ---------HhhHH----HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 11111 222233 368999999999443 335677777777653
No 196
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.08 E-value=0.00092 Score=63.42 Aligned_cols=102 Identities=20% Similarity=0.333 Sum_probs=52.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
...-+.++|..|+|||.||.++.+.. .... ..+.|++. .+++..+-.. . .....+.. + +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~-~~~g-~~v~f~~~------~~L~~~l~~~----~-~~~~~~~~---~-~~l~- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEA-IRKG-YSVLFITA------SDLLDELKQS----R-SDGSYEEL---L-KRLK- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHHHCC----H-CCTTHCHH---H-HHHH-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHh-ccCC-cceeEeec------Cceecccccc----c-cccchhhh---c-Cccc-
Confidence 34569999999999999999998742 2222 34666653 3444444321 1 11122222 2 2232
Q ss_pred CceEEEEeCCCCCCcccchh--hhhhhcC-CCCCcEEEEEeCCH
Q 003300 286 KKFFLVLDDVWDGDYKKWDP--FFSCLKN-GHHESKILITTRDR 326 (832)
Q Consensus 286 k~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 326 (832)
+.=|||+||+-......|.. +...+.. ..++ .+||||...
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 34588899996554344432 3332222 1223 588899854
No 197
>PRK06921 hypothetical protein; Provisional
Probab=97.07 E-value=0.0029 Score=64.26 Aligned_cols=99 Identities=23% Similarity=0.285 Sum_probs=55.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhcc-CCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
...+.++|..|+|||.||.++++. .... -..++|++.. +++..+.... +.... ..+.+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~-~~~~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEA-KLNRM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHH-HHHHh-c
Confidence 467899999999999999999984 3322 3456777642 2333332221 11111 12223 2
Q ss_pred CceEEEEeCCCC-----CCcccchh--hhhhhcC-CCCCcEEEEEeCC
Q 003300 286 KKFFLVLDDVWD-----GDYKKWDP--FFSCLKN-GHHESKILITTRD 325 (832)
Q Consensus 286 k~~LlVlDdv~~-----~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 325 (832)
+-=|||+||+.. +....|.. +...+.. ...+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 355999999932 22234433 4443332 1234558888874
No 198
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.05 E-value=0.00081 Score=62.37 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=36.6
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccC-CCcccEEeccCccCccccC--cccccccCCceeecCC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCE-LYNLQKLDIRRCRNLKELP--AGIGKLKNMRSLLNGE 539 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~-l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~l~~ 539 (832)
-.+||++|.+..+ +.|..+.+|.+|.|++|.|+.+-+.+.. +++|+.|.+.+|+ +.++. ..+..+++|++|.+-+
T Consensus 45 d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecC
Confidence 3455555555544 2344555566666666665555333332 3345555555544 22221 1133444555554444
Q ss_pred c
Q 003300 540 T 540 (832)
Q Consensus 540 ~ 540 (832)
|
T Consensus 123 N 123 (233)
T KOG1644|consen 123 N 123 (233)
T ss_pred C
Confidence 4
No 199
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.025 Score=58.84 Aligned_cols=92 Identities=8% Similarity=-0.028 Sum_probs=64.8
Q ss_pred CCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCC
Q 003300 285 GKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSF 362 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 362 (832)
+++=++|+|+++.-+......+...+.....++.+|++|.+. .+... .+....+.+.+++.++..+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~---- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA---- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc----
Confidence 566688899997766666677777777767777777777764 33333 344678999999999998888775311
Q ss_pred CCccchHHHHHHHHHHcCCChhH
Q 003300 363 EDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 363 ~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
....+...+..++|.|..
T Consensus 182 -----~~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 182 -----EISEILTALRINYGRPLL 199 (325)
T ss_pred -----ChHHHHHHHHHcCCCHHH
Confidence 012345667889999963
No 200
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.04 E-value=0.00019 Score=82.50 Aligned_cols=134 Identities=23% Similarity=0.143 Sum_probs=64.0
Q ss_pred CceeEEEeCCcCc-c-cccccc-cCCCcccEEeccCccCc-cccCcccccccCCceeecCCccCcccccCCCCCCCCCcc
Q 003300 483 IHLRYLNLSELGI-E-RLPKTL-CELYNLQKLDIRRCRNL-KELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRT 558 (832)
Q Consensus 483 ~~L~~L~Ls~~~i-~-~lp~~~-~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~ 558 (832)
.+|++|++++... . .-|..+ ..|++|+.|.+++=... .++-.-..++++|..||+|++ .++.+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 3456666655431 1 112222 23566666666552211 111122345666667777666 33333 45666777776
Q ss_pred CCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCCh--hhhhhhcccCCCCCCceEEEEec
Q 003300 559 LDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHL--DEAERLQLYNQQNLLRLRLEFGR 622 (832)
Q Consensus 559 L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~ 622 (832)
|.+. +-.+. ....+..|-.|++|+.|+++........ ...-...-..+++|+.|+.++..
T Consensus 200 L~mr--nLe~e--~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMR--NLEFE--SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred Hhcc--CCCCC--chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 6522 21111 2233445556666666666654333222 11111223346788888877554
No 201
>PRK09183 transposase/IS protein; Provisional
Probab=97.02 E-value=0.0031 Score=63.98 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=53.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
...+.|+|.+|+|||+||..++.... . .-..+.+++. .++...+...... .. +...+.+.+ .+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~-~-~G~~v~~~~~------~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~ 164 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV-R-AGIKVRFTTA------ADLLLQLSTAQRQ-----GR---YKTTLQRGV-MA 164 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH-H-cCCeEEEEeH------HHHHHHHHHHHHC-----Cc---HHHHHHHHh-cC
Confidence 34678999999999999999976322 2 2223445432 2333333222111 01 112222222 34
Q ss_pred ceEEEEeCCCCCCcccch--hhhhhhcC-CCCCcEEEEEeCCH
Q 003300 287 KFFLVLDDVWDGDYKKWD--PFFSCLKN-GHHESKILITTRDR 326 (832)
Q Consensus 287 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 326 (832)
.-++|+||+.......+. .+...+.. ...++ +|+||...
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 569999999654333332 24443332 22344 88888753
No 202
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.02 E-value=0.0086 Score=67.34 Aligned_cols=207 Identities=15% Similarity=0.091 Sum_probs=106.2
Q ss_pred CceecchhhHHHHHHHHh---ccCC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLL---CESG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.++.++++.+++. .... ......+-+.++|++|+|||++|+.++.. .... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HH
Confidence 468888776665554433 2110 00123456889999999999999999973 2111 222221 11
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc----------ccchh----hhhhhcC--CCCCc
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY----------KKWDP----FFSCLKN--GHHES 317 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------~~~~~----l~~~l~~--~~~gs 317 (832)
+. ..... .....+...+.......+.+|++||++.-.. ..+.. +...+.. ...+.
T Consensus 124 ~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11000 0112223333333446678999999944210 11112 1111211 22344
Q ss_pred EEEEEeCCHHHHH-Hh----CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC-hhHHHHHHH
Q 003300 318 KILITTRDRSVAL-QL----GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL-PLAAKVIGN 391 (832)
Q Consensus 318 ~iivTtr~~~~~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 391 (832)
.||.||....... .+ .-...+.+...+.++-.+++..+...... . . ......+++.+.|+ +-.|..+..
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~--~--~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-A--P--DVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-C--c--chhHHHHHHhCCCCCHHHHHHHHH
Confidence 5666776543221 11 12457889989998888888877643211 1 1 12235788888874 444444332
Q ss_pred ---H--hc-CC--CCHHHHHHHHhhhcc
Q 003300 392 ---L--LR-SK--STVKEWQRILESEMW 411 (832)
Q Consensus 392 ---~--l~-~~--~~~~~w~~~~~~~~~ 411 (832)
. .+ .+ -+.++.+.+++...+
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 1 11 12 256777777776543
No 203
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.02 E-value=7.9e-05 Score=64.23 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=55.6
Q ss_pred EEecCCCccccccccCCC-CceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 465 FRLHSNLIREIPKNVGKL-IHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 465 L~L~~n~l~~lp~~l~~l-~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
.+|++|.+..+|+.|... +.++.|++++|.|..+|..+..++.|+.|+++.|. +...|..+..|.+|-.|+..+|
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 466777777777776643 47778888888888888888888888888888766 5556666777777777777666
No 204
>PRK04296 thymidine kinase; Provisional
Probab=97.01 E-value=0.0019 Score=62.31 Aligned_cols=113 Identities=14% Similarity=0.058 Sum_probs=63.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCC--CCcHHHHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASG--LSEFESLMKQIQEYIMG 285 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 285 (832)
.++.|+|..|.||||+|..++. +...+-..++.+. ..++.+.....++++++..... ....+.+...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4778999999999999988877 3333333444442 2222222234456666543221 2233444444444 333
Q ss_pred CceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH
Q 003300 286 KKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS 327 (832)
Q Consensus 286 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 327 (832)
+.-+||+|.+..-+.++...+...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4558999999443222233333332 235778999998744
No 205
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.98 E-value=0.0038 Score=64.71 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=69.9
Q ss_pred cchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhC
Q 003300 184 GRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLG 263 (832)
Q Consensus 184 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 263 (832)
+|....+...+++..-.. ....+-+.++|..|+|||.||.++++.. ...-..+.++++. +++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 444445555566653221 1134679999999999999999999853 2222345666543 45555544432
Q ss_pred CCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchh--hhhhh-cCC-CCCcEEEEEeCC
Q 003300 264 VSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDP--FFSCL-KNG-HHESKILITTRD 325 (832)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr~ 325 (832)
.. +... .+ +.+ .+.=||||||+-.+....|.. +...+ ... ..+-.+|+||..
T Consensus 205 ~~-----~~~~---~l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKE---KI-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHH---HH-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 21 1222 22 223 245689999997665566753 44433 221 244568888874
No 206
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.98 E-value=0.0042 Score=59.23 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=29.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEE
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 244 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 244 (832)
...+|.+.|+.|+||||+|+.++. +....+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456899999999999999999997 4555566666653
No 207
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.98 E-value=0.0022 Score=75.20 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=89.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+.+|.+..+++|.++|............++.++|.+|+||||+|+.++. .....| +-++++...+...+...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccchh
Confidence 35899999999999888742211112446899999999999999999996 233233 2233343333322211100
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCccc----chhhhhhhcCC---------------CCCcEEE
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKK----WDPFFSCLKNG---------------HHESKIL 320 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~ii 320 (832)
.-. +... ..+.+.+.+. ....-++++|.++...... .+.+...+... ....-+|
T Consensus 397 ~~~-----g~~~-G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYI-----GSMP-GKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccC-----CCCC-cHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 000 0111 1122222221 2234578999996543221 23344433221 1233345
Q ss_pred EEeCCHHHHHH-hCCcCeeeCCCCChHHHHHHHHHHh
Q 003300 321 ITTRDRSVALQ-LGSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 321 vTtr~~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
.|+....+... .+....+.+.+++.+|-.++..++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55554332221 2335689999999999988877765
No 208
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.97 E-value=0.0034 Score=74.58 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=77.0
Q ss_pred CceecchhhHHHHHHHHhccCC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
..++|.++.++.+.+.+..... ..+....++.++|+.|+|||.+|+.++.. .-+.....+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 4689999999999888864311 11234568899999999999999988863 21112223333332211111
Q ss_pred HHHHHhCCCCCC--CCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEe
Q 003300 257 AIIEGLGVSASG--LSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITT 323 (832)
Q Consensus 257 ~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 323 (832)
.+..-+|.+... ......+...++ +...-+|+||++...+++.++.+...+..+. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 111112222111 111112222222 2455699999998777777777777665442 345577777
Q ss_pred CC
Q 003300 324 RD 325 (832)
Q Consensus 324 r~ 325 (832)
..
T Consensus 717 Nl 718 (852)
T TIGR03345 717 NA 718 (852)
T ss_pred CC
Confidence 63
No 209
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.96 E-value=4.6e-05 Score=83.12 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=76.3
Q ss_pred HHhhcccccEEEecCccccc-----cC--CCcEEecCCCcccccccc-CCCCceeEEEeCCcCcccccccccCCCcccEE
Q 003300 440 LFSKLACLRALVIRQSLVIR-----LS--SSPFRLHSNLIREIPKNV-GKLIHLRYLNLSELGIERLPKTLCELYNLQKL 511 (832)
Q Consensus 440 ~f~~~~~Lr~L~~~~~~~~~-----~~--~r~L~L~~n~l~~lp~~l-~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L 511 (832)
.+.-++.|++|+++.|++.+ .+ +.+|||++|.+..+|.-= ..+ +|..|.+++|.++++ ..+.+|.+|+.|
T Consensus 182 SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhcc
Confidence 34456788999999888532 12 589999999999998532 233 499999999999988 458999999999
Q ss_pred eccCccCccccC--cccccccCCceeecCCccC
Q 003300 512 DIRRCRNLKELP--AGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 512 ~L~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~ 542 (832)
|+++|-.. ... ..++.|..|+.|+|.+|..
T Consensus 260 DlsyNll~-~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNLLS-EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhhhh-cchhhhHHHHHHHHHHHhhcCCcc
Confidence 99997533 221 2367788999999999953
No 210
>PRK06526 transposase; Provisional
Probab=96.96 E-value=0.0022 Score=64.49 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=53.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
..-+.++|.+|+|||+||..+..... ...+ .+.|++ ..++...+..... .... ...+.+ + .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~t------~~~l~~~l~~~~~-----~~~~---~~~l~~-l-~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFAT------AAQWVARLAAAHH-----AGRL---QAELVK-L-GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhhh------HHHHHHHHHHHHh-----cCcH---HHHHHH-h-cc
Confidence 34689999999999999999987422 2222 344432 3344444433211 1111 122222 2 23
Q ss_pred ceEEEEeCCCCCCcccch--hhhhhhcC-CCCCcEEEEEeCCH
Q 003300 287 KFFLVLDDVWDGDYKKWD--PFFSCLKN-GHHESKILITTRDR 326 (832)
Q Consensus 287 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 326 (832)
.-+||+||+.......+. .+...+.. ..+++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999654322222 23333322 22344 88888754
No 211
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.95 E-value=0.00034 Score=63.83 Aligned_cols=88 Identities=24% Similarity=0.239 Sum_probs=49.3
Q ss_pred EEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceE
Q 003300 210 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFF 289 (832)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 289 (832)
|.++|.+|+|||+||+.++. ... ....-+.++...+..++....--. .... .-.+ ..+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~~-~~~~-~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLG---RPVIRINCSSDTTEEDLIGSYDPS-NGQF-EFKD-GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHT---CEEEEEE-TTTSTHHHHHCEEET--TTTT-CEEE--CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhh---cceEEEEeccccccccceeeeeec-cccc-cccc-ccccccc-----cceeE
Confidence 67999999999999999997 221 234456778878877666433211 0000 0000 0000000 17889
Q ss_pred EEEeCCCCCCcccchhhhhhh
Q 003300 290 LVLDDVWDGDYKKWDPFFSCL 310 (832)
Q Consensus 290 lVlDdv~~~~~~~~~~l~~~l 310 (832)
+|+|++...+...+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999765555555555544
No 212
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.92 E-value=0.0049 Score=73.82 Aligned_cols=138 Identities=17% Similarity=0.266 Sum_probs=78.6
Q ss_pred CceecchhhHHHHHHHHhccCCC---CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGE---QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
..++|.+..++.+...+.....+ .+....++.++|..|+|||++|+.++.. ....-...+.++++.-...... .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-A 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH-H
Confidence 35899999999999888753210 1123467889999999999999999973 2122233445555432221111 1
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHHHcCC-ceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEeC
Q 003300 257 AIIEGLGVSASGLSEFESLMKQIQEYIMGK-KFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTR 324 (832)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 324 (832)
.-++.+. +-...++ ...+...++.+ ..+|+||++...+.+.+..|...+..+. +.+-||+||.
T Consensus 642 ---~l~g~~~-g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 642 ---RLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred ---HhcCCCC-CccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 1122221 1100000 11233333323 3489999998878778888877775431 2333777877
Q ss_pred C
Q 003300 325 D 325 (832)
Q Consensus 325 ~ 325 (832)
.
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 5
No 213
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.90 E-value=0.0056 Score=63.99 Aligned_cols=101 Identities=17% Similarity=0.104 Sum_probs=66.2
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC-Ce-eEEEEeCCC-ccHHHHHHHHHHHhCC
Q 003300 188 EKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EK-VIWVCVSDT-FEGIRVAKAIIEGLGV 264 (832)
Q Consensus 188 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~-~~wv~~~~~-~~~~~~~~~i~~~l~~ 264 (832)
...++++.+..-. .-..+.|+|..|+|||||++.+++. +.... +. ++|+.+.+. .++.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3455777776432 3356799999999999999998873 33222 33 467666654 4678888888887776
Q ss_pred CCCCCCcHHH-----HHHHHHHHH--cCCceEEEEeCC
Q 003300 265 SASGLSEFES-----LMKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 265 ~~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 295 (832)
+..+...... ....+.+++ ++++.+||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 5433322221 222333333 589999999998
No 214
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0029 Score=70.01 Aligned_cols=166 Identities=17% Similarity=0.217 Sum_probs=89.1
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
+.+-.|-++..++|++.|.-..-...-.-+++++||++|||||+|++.++. .....|-. ++++.--+..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEIR--- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEIR--- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHhc---
Confidence 345789999999999988643211122457999999999999999999997 45545422 2333322222110
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCccc----chhhhhhhcC-CC------------CCcEEE-
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKK----WDPFFSCLKN-GH------------HESKIL- 320 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~-~~------------~gs~ii- 320 (832)
......-+... ..+++.+.+ -+.+.-+++||.++.-..+- -..+...+.+ ++ .=|+|+
T Consensus 394 --GHRRTYIGamP-GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 394 --GHRRTYIGAMP-GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred --cccccccccCC-hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 00000111111 112222222 24567799999985532111 1112222211 10 123443
Q ss_pred -EEeCCHH--HHHHhCCcCeeeCCCCChHHHHHHHHHHh
Q 003300 321 -ITTRDRS--VALQLGSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 321 -vTtr~~~--~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
.|+.+-+ .+..+.....|++.+-+++|=.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3333322 12234556789999999999877777654
No 215
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0028 Score=69.27 Aligned_cols=189 Identities=17% Similarity=0.164 Sum_probs=112.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
+++||-+..++.+...+.... -..--...|.-|+||||+|+-++...- +... .....+..-..-+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalN----C~~~---~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALN----CENG---PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhc----CCCC---CCCCcchhhhhhHhhh
Confidence 457999999999999887642 234556789999999999998886311 1100 0111111111112221
Q ss_pred HH--hC---CCCCCCCcHHHHHHHHHHHH----cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHH
Q 003300 260 EG--LG---VSASGLSEFESLMKQIQEYI----MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVA 329 (832)
Q Consensus 260 ~~--l~---~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~ 329 (832)
.. ++ ........++++.+.+.+.. +++.=+.|+|+|+..+...|..+..-+.......+.|+.|++. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 00 00001112232222222211 3555588999998877778888877776666666666666654 333
Q ss_pred H-HhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh
Q 003300 330 L-QLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL 384 (832)
Q Consensus 330 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 384 (832)
. ..+..+.|.++.++.++-...+...+..+.. ...++...-|++...|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I----~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI----NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCC----ccCHHHHHHHHHHcCCChh
Confidence 2 2455789999999999988888887754433 2234556677888887543
No 216
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.87 E-value=0.0036 Score=60.08 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=63.3
Q ss_pred chhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeC----CCc-----cHH---
Q 003300 185 RVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS----DTF-----EGI--- 252 (832)
Q Consensus 185 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~-----~~~--- 252 (832)
+..+-....+.|.. ..++.+.|.+|.|||.||.+.+-+.-..+.|+.++++.-. +.. +.+
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 34445555666652 2489999999999999998888765556889988887421 111 100
Q ss_pred -HHHHHHHHHhCCCCCCCCcHHHHHHH------HHHHHcCC---ceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEE
Q 003300 253 -RVAKAIIEGLGVSASGLSEFESLMKQ------IQEYIMGK---KFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILIT 322 (832)
Q Consensus 253 -~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 322 (832)
-.+.-+...+..-. .....+.+.+. -..+++|+ ..+||+|++.+.+..++..+ +-..+.|||||++
T Consensus 77 ~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~ 152 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIIT 152 (205)
T ss_dssp -TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEe
Confidence 01111222222111 11122222211 01234444 35999999977655555554 4455789999999
Q ss_pred eCCH
Q 003300 323 TRDR 326 (832)
Q Consensus 323 tr~~ 326 (832)
--..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 8654
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.043 Score=57.78 Aligned_cols=176 Identities=10% Similarity=0.035 Sum_probs=99.4
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC--------CeeEEEEeCCCccHHHHHHHHH
Q 003300 188 EKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF--------EKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 188 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.-+++...+..+ .-...+.+.|..|+||+++|.+++...--...- +.+-++..+..+|...+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 345566655443 235678899999999999998887631000000 00001101111111000
Q ss_pred HHhCCCC-CCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHHHH-
Q 003300 260 EGLGVSA-SGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVALQ- 331 (832)
Q Consensus 260 ~~l~~~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~- 331 (832)
.... ...-.++++.+ +.+.+ .+++=++|+|+++.-+...-..+...+.....++.+|++|.+. .+...
T Consensus 80 ---~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ---ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 0000 01123344333 22222 3566689999996655556666777777766777777777664 34433
Q ss_pred hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 332 LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 332 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
.+....+.+.+++.+++...+..... ...+.+..++..++|.|...
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~~---------~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREVT---------MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHccC---------CCHHHHHHHHHHcCCCHHHH
Confidence 34467899999999999887765320 11234667889999999643
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.85 E-value=0.006 Score=60.89 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=35.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRV 254 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 254 (832)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++.+.+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 5679999999999999999888863 33344679999887 5555443
No 219
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0058 Score=65.04 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=86.0
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc-------------------cCCeeE
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKVI 241 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 241 (832)
.++|-+....++..+...... ....+.++|+.|+||||+|.++++...-.. .++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 356777888888888875432 334699999999999999999987421110 123344
Q ss_pred EEEeCCCcc---HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcE
Q 003300 242 WVCVSDTFE---GIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESK 318 (832)
Q Consensus 242 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 318 (832)
.+..+.... ..+..+.+.+....... .++.-++++|+++.-+.+.-..+...+......++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444443332 22333333333222111 25677899999966554444556665655667788
Q ss_pred EEEEeCCH-HHHHHh-CCcCeeeCCCCChHH
Q 003300 319 ILITTRDR-SVALQL-GSIDIIPVKELGEGE 347 (832)
Q Consensus 319 iivTtr~~-~~~~~~-~~~~~~~l~~L~~~~ 347 (832)
+|++|.+. .+...+ .....+.+.+.+..+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchHHH
Confidence 88888743 332222 235567777743333
No 220
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.84 E-value=0.0038 Score=74.55 Aligned_cols=136 Identities=16% Similarity=0.229 Sum_probs=77.1
Q ss_pred CceecchhhHHHHHHHHhccCC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
..++|-++.++.+...+..... ..+.....+.++|+.|+|||+||+.+++. .-+.-...+-++.+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHH-
Confidence 4588999999999887763211 01123456778999999999999999862 21111234444444322211111
Q ss_pred HHHHHhCCCCC--CCCcHHHHHHHHHHHHcCCc-eEEEEeCCCCCCcccchhhhhhhcCC-----------CCCcEEEEE
Q 003300 257 AIIEGLGVSAS--GLSEFESLMKQIQEYIMGKK-FFLVLDDVWDGDYKKWDPFFSCLKNG-----------HHESKILIT 322 (832)
Q Consensus 257 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivT 322 (832)
.-++.+.. +-.... .+.+.++.++ -+++||++...+.+.+..+...+..+ ...+-||+|
T Consensus 586 ---~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 ---KLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ---HhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11222211 111112 2344444454 58899999887777777777776543 134456777
Q ss_pred eCC
Q 003300 323 TRD 325 (832)
Q Consensus 323 tr~ 325 (832)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 764
No 221
>PRK04132 replication factor C small subunit; Provisional
Probab=96.83 E-value=0.03 Score=65.51 Aligned_cols=152 Identities=12% Similarity=-0.024 Sum_probs=96.2
Q ss_pred cCCCcHHHHHHHHHcChhhhccC-CeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEe
Q 003300 215 LGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLD 293 (832)
Q Consensus 215 ~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 293 (832)
+.++||||+|+.++++. ....+ ..++-+++++...... .++++.......+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 67899999999999842 12222 2467777776544443 33333222110000 01245699999
Q ss_pred CCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH-HHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHH
Q 003300 294 DVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS-VALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPM 371 (832)
Q Consensus 294 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 371 (832)
+++.-+......+...+.......++|++|.+.. +... .+.+..+.+.+++.++-...+...+...+. .-.++.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi----~i~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC----CCCHHH
Confidence 9987766677777777766555677777776543 3222 234678999999999998888776543221 112557
Q ss_pred HHHHHHHcCCChhHH
Q 003300 372 GRKIAHKCKGLPLAA 386 (832)
Q Consensus 372 ~~~i~~~~~g~Plai 386 (832)
...|++.++|.+..+
T Consensus 714 L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 714 LQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHcCCCHHHH
Confidence 789999999988443
No 222
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.83 E-value=0.016 Score=58.29 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=98.3
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC-CeeEEEEeCCCccHHH-HHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEGIR-VAKA 257 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~-~~~~ 257 (832)
..++|-.++-.++-.++..... .++...+.|+|+.|.|||+|......+ .+.| +..+-|........++ .++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 4689998888888888765432 234567889999999999999877764 2233 4556666666554432 3445
Q ss_pred HHHHhCC----CCCCCCcHHHHHHHHHHHHc------CCceEEEEeCCCCCCcccchh-hhhhhc----CCCCCcEEEEE
Q 003300 258 IIEGLGV----SASGLSEFESLMKQIQEYIM------GKKFFLVLDDVWDGDYKKWDP-FFSCLK----NGHHESKILIT 322 (832)
Q Consensus 258 i~~~l~~----~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~-l~~~l~----~~~~gs~iivT 322 (832)
|..++.. ......+..+....+-..|+ +-++++|+|..+-.-...-.. +...|. ...+-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 5555432 22222233333444444443 335788888774322111111 222221 13456667889
Q ss_pred eCCHHHH-------HHhCCcCeeeCCCCChHHHHHHHHHHh
Q 003300 323 TRDRSVA-------LQLGSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 323 tr~~~~~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
||-.... ....-..++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9854322 222223355566777788877777765
No 223
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.81 E-value=0.0049 Score=60.76 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=36.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 5689999999999999999888863 333456799998875 55554443
No 224
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.81 E-value=0.03 Score=50.63 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhcchhhHH
Q 003300 2 VDAIVSSLLEQLISVAADEVKQQVRLVTGVRQEVKKLTSNLQAIRAVLEDAEKRQMQHDKAVTFWLDQLKDASYDMEDVL 81 (832)
Q Consensus 2 a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~lr~~~~d~ed~l 81 (832)
|+-+++|+++.+++.+...+....+....++.-+++|...+++|.-++++.+.....-+..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 46567788999999999999988888889999999999999999999999987644324444777899999999999998
Q ss_pred HHH
Q 003300 82 EEW 84 (832)
Q Consensus 82 d~~ 84 (832)
+.|
T Consensus 83 ~k~ 85 (147)
T PF05659_consen 83 EKC 85 (147)
T ss_pred HHh
Confidence 876
No 225
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.80 E-value=0.0049 Score=62.13 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=50.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
+..-+.++|.+|+|||.||.++.+. ....--.+.++++. +++.++...... .. ....+.+.++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~------el~~~Lk~~~~~----~~----~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAP------DLLSKLKAAFDE----GR----LEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHH------HHHHHHHHHHhc----Cc----hHHHHHHHhh-
Confidence 3456999999999999999999995 33332356666543 455555554433 11 1122333232
Q ss_pred CceEEEEeCCCCCCcccch
Q 003300 286 KKFFLVLDDVWDGDYKKWD 304 (832)
Q Consensus 286 k~~LlVlDdv~~~~~~~~~ 304 (832)
+-=|||+||+-......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2348999999665445554
No 226
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.049 Score=55.57 Aligned_cols=202 Identities=17% Similarity=0.163 Sum_probs=110.6
Q ss_pred ceecchhhHHHHHHHHhccCCC-------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGE-------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
++=|-++.+++|.+...-+-.. +-+.++-|.+||++|.|||-||++|+++ ... .|+.+... +-
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~A-----tFIrvvgS---El 221 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDA-----TFIRVVGS---EL 221 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCc-----eEEEeccH---HH
Confidence 4667788888888776533210 1346778999999999999999999983 322 23333221 11
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc-CCceEEEEeCCCCC-----------Ccccchhhhh---hhcC--CCCC
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIM-GKKFFLVLDDVWDG-----------DYKKWDPFFS---CLKN--GHHE 316 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-----------~~~~~~~l~~---~l~~--~~~g 316 (832)
++..| | +...++..+.+.-+ ..+.+|.+|.++.- +.+.-..+.. .+.. ....
T Consensus 222 VqKYi----G-------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 222 VQKYI----G-------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHHh----c-------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 11111 1 11334455555544 56788889988431 1111112222 2222 1345
Q ss_pred cEEEEEeCCHHHHHHh----C-CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh----hHHH
Q 003300 317 SKILITTRDRSVALQL----G-SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP----LAAK 387 (832)
Q Consensus 317 s~iivTtr~~~~~~~~----~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lai~ 387 (832)
.|||..|...+..... | -...|++..-+.+.-.++|.-++-...- .+.-++ +.+++.+.|.- .|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd~----e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVDL----ELLARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcCH----HHHHHhcCCCchHHHHHHH
Confidence 6899988866554321 2 2567888755555556666666543332 333444 45566666653 4455
Q ss_pred HHHHHhc--CCC---CHHHHHHHHhh
Q 003300 388 VIGNLLR--SKS---TVKEWQRILES 408 (832)
Q Consensus 388 ~~~~~l~--~~~---~~~~w~~~~~~ 408 (832)
+=|++++ ..+ +.+++..+.+.
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHHH
Confidence 5555553 222 45666665554
No 227
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.80 E-value=0.0017 Score=67.57 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=42.4
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
+++|.++.++++++++.....+.....++++++|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999998754322345689999999999999999999874
No 228
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.016 Score=61.67 Aligned_cols=149 Identities=22% Similarity=0.283 Sum_probs=84.9
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Q 003300 204 QQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 283 (832)
Q Consensus 204 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 283 (832)
......+.+.|.+|+|||+||..++. ...|+.+--++..+-. |.. +......+.......-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~mi-------------G~s--EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMI-------------GLS--ESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHcc-------------Ccc--HHHHHHHHHHHHHHhh
Confidence 34677788999999999999999986 3567765554322111 000 1111122222223333
Q ss_pred cCCceEEEEeCCCCCCcccchhh------------hhhhcC-CCCCcE--EEEEeCCHHHHHHhCC----cCeeeCCCCC
Q 003300 284 MGKKFFLVLDDVWDGDYKKWDPF------------FSCLKN-GHHESK--ILITTRDRSVALQLGS----IDIIPVKELG 344 (832)
Q Consensus 284 ~~k~~LlVlDdv~~~~~~~~~~l------------~~~l~~-~~~gs~--iivTtr~~~~~~~~~~----~~~~~l~~L~ 344 (832)
+..--.||+||+.. .-+|-.+ .-.+.. ..+|-| |+-||....+...|+. ...|.++-++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 56667999999933 2333322 222322 234444 4447777788877764 4588999997
Q ss_pred h-HHHHHHHHHHh-hccCCCCCccchHHHHHHHHHHc
Q 003300 345 E-GECCLLFKQIA-FLRRSFEDREKLEPMGRKIAHKC 379 (832)
Q Consensus 345 ~-~~~~~lf~~~~-~~~~~~~~~~~~~~~~~~i~~~~ 379 (832)
. ++..+.++..- |. +...+..+.+...+|
T Consensus 674 ~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 7 77777777653 32 223344455555555
No 229
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.03 Score=58.78 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=63.9
Q ss_pred CCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHHHH-hCCcCeeeCCCCChHHHHHHHHHHhhccCCC
Q 003300 285 GKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVALQ-LGSIDIIPVKELGEGECCLLFKQIAFLRRSF 362 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 362 (832)
+++-++|+|+++.-+......+...+....+++.+|++|.+. .+... .+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 455688999997777677778888887777777777666654 44333 3446789999999999998887642 1
Q ss_pred CCccchHHHHHHHHHHcCCChhHHH
Q 003300 363 EDREKLEPMGRKIAHKCKGLPLAAK 387 (832)
Q Consensus 363 ~~~~~~~~~~~~i~~~~~g~Plai~ 387 (832)
.+ ...++..++|.|....
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHH
Confidence 11 1235778899997544
No 230
>PRK07261 topology modulation protein; Provisional
Probab=96.78 E-value=0.0031 Score=59.59 Aligned_cols=64 Identities=16% Similarity=0.312 Sum_probs=39.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhh-hccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCc
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEV-KRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKK 287 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 287 (832)
.|.|+|++|+||||||+.+...... .-+.|...|-+. ....+.++..+.+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 4899999999999999998863211 113344555211 012233445556666676666
Q ss_pred eEEEEeCC
Q 003300 288 FFLVLDDV 295 (832)
Q Consensus 288 ~LlVlDdv 295 (832)
.|+|+.
T Consensus 61 --wIidg~ 66 (171)
T PRK07261 61 --WIIDGN 66 (171)
T ss_pred --EEEcCc
Confidence 577877
No 231
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.76 E-value=0.0012 Score=63.91 Aligned_cols=78 Identities=23% Similarity=0.238 Sum_probs=45.2
Q ss_pred CcEEecCCCccc-----cccccCCCCceeEEEeCCcCcc----ccc-------ccccCCCcccEEeccCccCccccCcc-
Q 003300 463 SPFRLHSNLIRE-----IPKNVGKLIHLRYLNLSELGIE----RLP-------KTLCELYNLQKLDIRRCRNLKELPAG- 525 (832)
Q Consensus 463 r~L~L~~n~l~~-----lp~~l~~l~~L~~L~Ls~~~i~----~lp-------~~~~~l~~L~~L~L~~~~~~~~lp~~- 525 (832)
..++||+|.+.. +...+.+-.+|+..+++.--.. ++| +.+-+|++|+..+||.|.+....|+.
T Consensus 33 ~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L 112 (388)
T COG5238 33 VEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEEL 112 (388)
T ss_pred eEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHH
Confidence 445677776543 3444555667777777654211 222 23556777777777777665555543
Q ss_pred ---cccccCCceeecCCc
Q 003300 526 ---IGKLKNMRSLLNGET 540 (832)
Q Consensus 526 ---l~~l~~L~~L~l~~~ 540 (832)
++.-+.|.||.+++|
T Consensus 113 ~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 113 GDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHHhcCCCceeEEeecC
Confidence 344556677776666
No 232
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.71 E-value=0.0016 Score=59.19 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=62.5
Q ss_pred ecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhh-hccCCeeEEEEeCCCccHHHHHHHHHHH
Q 003300 183 CGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEV-KRNFEKVIWVCVSDTFEGIRVAKAIIEG 261 (832)
Q Consensus 183 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 261 (832)
||+...++++.+.+..-.. ...-|.|+|..|+||+++|+.++..... ...|.. +++... . .++
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~-~-----~~~--- 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL-P-----AEL--- 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-C-----HHH---
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-c-----HHH---
Confidence 5777777777777665432 3446789999999999999988874221 111111 111110 0 111
Q ss_pred hCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcC-CCCCcEEEEEeCC
Q 003300 262 LGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKN-GHHESKILITTRD 325 (832)
Q Consensus 262 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~ 325 (832)
+.+ .+.--|+++|+..-+.+....+...+.. .....|+|.||+.
T Consensus 65 -----------------l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 65 -----------------LEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp -----------------HHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred -----------------HHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111 1444678999976665566667666654 3567899999985
No 233
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.68 E-value=0.015 Score=56.16 Aligned_cols=177 Identities=16% Similarity=0.114 Sum_probs=99.6
Q ss_pred CceecchhhHHH---HHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 180 GEVCGRVDEKNE---LLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 180 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
+++||.++...+ |.+.|..+..-..-..+-|..+|++|.|||.+|+++++...+ . ++.+. ...
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p-----~l~vk-------at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--P-----LLLVK-------ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--c-----eEEec-------hHH
Confidence 468898776543 667776665434557889999999999999999999995332 1 12111 111
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHH-HHHcCCceEEEEeCCCCCC--------cccchhhhhhh----cC--CCCCcEEEE
Q 003300 257 AIIEGLGVSASGLSEFESLMKQIQ-EYIMGKKFFLVLDDVWDGD--------YKKWDPFFSCL----KN--GHHESKILI 321 (832)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l----~~--~~~gs~iiv 321 (832)
-|-+..| +....+..+. +.-+.-++++.+|.++-.. ..+...+..++ .. .+.|.-.|-
T Consensus 187 liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1222222 1122222332 3334678899999873311 01122222222 22 245655666
Q ss_pred EeCCHHHHHHh-C--CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC
Q 003300 322 TTRDRSVALQL-G--SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL 382 (832)
Q Consensus 322 Ttr~~~~~~~~-~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 382 (832)
.|.+.+..... . -...|+..--+++|-.+++..++-.-.- ......+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl-----pv~~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL-----PVDADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC-----ccccCHHHHHHHhCCC
Confidence 66666554321 1 1346777778899999999988743221 1112245677777775
No 234
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.67 E-value=0.0048 Score=57.83 Aligned_cols=133 Identities=16% Similarity=0.129 Sum_probs=66.4
Q ss_pred eecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHH
Q 003300 182 VCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEG 261 (832)
Q Consensus 182 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 261 (832)
+||....++++++.+..... ...-|.|+|..|+||+.+|+.+++.... .-...+-|+++. .+.+.+-..++-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhh-hhcchhhhhhhcc
Confidence 46888888888887766543 2245679999999999999999984211 112234445543 2333333333322
Q ss_pred hCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCC------C-----CCcEEEEEeCCH
Q 003300 262 LGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNG------H-----HESKILITTRDR 326 (832)
Q Consensus 262 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iivTtr~~ 326 (832)
......+.... ....+.+ -..=-|+||++..-....-..+...+..+ . ...|||.||...
T Consensus 74 ~~~~~~~~~~~--~~G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSD--KKGLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSE--BEHHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccc--cCCceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 11111111000 0011111 22336789999665544444454444321 1 246889888754
No 235
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.67 E-value=0.014 Score=57.64 Aligned_cols=126 Identities=19% Similarity=0.149 Sum_probs=76.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-----CccHHHHHHHHHHHhCCCC------CCCCcHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-----TFEGIRVAKAIIEGLGVSA------SGLSEFES 274 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~ 274 (832)
...+++|+|.+|.||||+++.+.. ....-...++..-.+ .....+...++++.++... +.+-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 446899999999999999999996 333344444443211 2223445666777776542 22222222
Q ss_pred -HHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC--CCCCcEEEEEeCCHHHHHHhCC
Q 003300 275 -LMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN--GHHESKILITTRDRSVALQLGS 334 (832)
Q Consensus 275 -~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~~~~~~~~ 334 (832)
-.-.+.+.+.-++-++|.|..-+. +...-.++...+.. ...|-..+..|.+-.++..+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 233466788889999999987321 11112333333332 2346678999999888877654
No 236
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.67 E-value=0.005 Score=64.37 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=56.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKK 287 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 287 (832)
..+.++|..|+|||.||.++++.. ...-..++|+++. +++..+...-.. ...+... . .+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~------~l~~~l~~~~~~---~~~~~~~---~-~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTAD------ELIEILREIRFN---NDKELEE---V-YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHH------HHHHHHHHHHhc---cchhHHH---H-HHHhc-cC
Confidence 569999999999999999999843 2223356776543 233333221110 1111111 1 22222 23
Q ss_pred eEEEEeCCCCCCcccch--hhhhhhcC-CCCCcEEEEEeCC
Q 003300 288 FFLVLDDVWDGDYKKWD--PFFSCLKN-GHHESKILITTRD 325 (832)
Q Consensus 288 ~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~ 325 (832)
=|||+||+..+....|. .+...+.. ...+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999665434442 24443332 2234568888875
No 237
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.63 E-value=0.012 Score=58.34 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=32.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCcc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 250 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 250 (832)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 5678999999999999999988863 323334688887665554
No 238
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.60 E-value=0.013 Score=58.43 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=52.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccC------CeeEEEEeCCCccHHHHHHHHHHHhCCCC---------CCCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF------EKVIWVCVSDTFEGIRVAKAIIEGLGVSA---------SGLS 270 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~ 270 (832)
.-.++.|+|.+|+|||+||.+++.. ..... ..++|++....++...+. .+....+... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 5679999999999999999988763 22223 568999887776665443 3333322110 0112
Q ss_pred cHHHHHHHHHHHHc----CCceEEEEeCC
Q 003300 271 EFESLMKQIQEYIM----GKKFFLVLDDV 295 (832)
Q Consensus 271 ~~~~~~~~l~~~l~----~k~~LlVlDdv 295 (832)
+.+++...+.+..+ .+.-++|+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 34444444444332 34447888887
No 239
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.57 E-value=0.015 Score=65.55 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=36.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.+++|.+..++.+...+... ...-+.|+|..|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999998877543 2345689999999999999999863
No 240
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.56 E-value=0.0056 Score=67.73 Aligned_cols=89 Identities=21% Similarity=0.233 Sum_probs=59.6
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Q 003300 204 QQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 283 (832)
Q Consensus 204 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 283 (832)
+..-+++.++|++|+||||||+-++++. .| .++-|++|+.-+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 4567899999999999999999999742 22 37788888887777666666555433221111
Q ss_pred cCCceEEEEeCCCCCCcccchhhhhhh
Q 003300 284 MGKKFFLVLDDVWDGDYKKWDPFFSCL 310 (832)
Q Consensus 284 ~~k~~LlVlDdv~~~~~~~~~~l~~~l 310 (832)
.+++.-||+|.++-......+.+...+
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHH
Confidence 157778999999665433344444444
No 241
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.55 E-value=0.014 Score=54.74 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=29.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCcc
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 250 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 250 (832)
++.|+|.+|+||||++..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999873 222335678887765543
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.52 E-value=0.016 Score=55.90 Aligned_cols=87 Identities=23% Similarity=0.245 Sum_probs=52.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeC-CCccHHHHHHHHHHHhCCCC---CCCCcHHHHH-HHHHH
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-DTFEGIRVAKAIIEGLGVSA---SGLSEFESLM-KQIQE 281 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~~ 281 (832)
++++.++|+.|+||||.+..++.. ....-..+..++.. ......+-++..++.++.+. ....+..... +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 368999999999999888777663 33233457777754 33456677888888888752 2222333333 33333
Q ss_pred HHcCCceEEEEeCC
Q 003300 282 YIMGKKFFLVLDDV 295 (832)
Q Consensus 282 ~l~~k~~LlVlDdv 295 (832)
.-.++.=+|++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 32233447778866
No 243
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0073 Score=70.33 Aligned_cols=121 Identities=13% Similarity=0.210 Sum_probs=69.0
Q ss_pred ceecchhhHHHHHHHHhccCCC---CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGE---QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
.++|-++.++.+...+.....+ .+.....+.++|+.|+|||++|+.++.. .. ...+.++++.-.+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhccccc----
Confidence 4789999998888887642110 1123567899999999999999999873 22 2344445443222111
Q ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHHc-CCceEEEEeCCCCCCcccchhhhhhhcC
Q 003300 258 IIEGLGVSASGLSEFESLMKQIQEYIM-GKKFFLVLDDVWDGDYKKWDPFFSCLKN 312 (832)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 312 (832)
+..-+|.+..... .+ ....+.+.++ ...-+|+||++...+.+.+..+...+..
T Consensus 530 ~~~LiG~~~gyvg-~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 530 VSRLIGAPPGYVG-FD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred HHHHcCCCCCccc-cc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 1111222211110 00 0112333333 3346999999988777777777776653
No 244
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.48 E-value=0.046 Score=50.61 Aligned_cols=125 Identities=22% Similarity=0.232 Sum_probs=73.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe---------------------CCCc---------------
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV---------------------SDTF--------------- 249 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---------------------~~~~--------------- 249 (832)
.-..+.|+|.+|.||||+.+.+|...+. -...+|+.- -|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 4468999999999999999999975332 223444421 1111
Q ss_pred ---------cHHHHHHHHHHHhCCC------CCCCCcHHHHHHHHHHHHcCCceEEEEeCCCC--CCcccchhhhhhhcC
Q 003300 250 ---------EGIRVAKAIIEGLGVS------ASGLSEFESLMKQIQEYIMGKKFFLVLDDVWD--GDYKKWDPFFSCLKN 312 (832)
Q Consensus 250 ---------~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~l~~~l~~ 312 (832)
...+-....++-.+.. .......++-.-.|.+.+-+++-+|+-|.--- +..-.|+.+.-+-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 1111122222222322 11223345555667788889999999996411 111345544333233
Q ss_pred CCCCcEEEEEeCCHHHHHHhC
Q 003300 313 GHHESKILITTRDRSVALQLG 333 (832)
Q Consensus 313 ~~~gs~iivTtr~~~~~~~~~ 333 (832)
+..|+-|+++|.+..+...+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 667999999999999887764
No 245
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.48 E-value=0.021 Score=67.64 Aligned_cols=180 Identities=14% Similarity=0.035 Sum_probs=93.3
Q ss_pred CceecchhhHHHHHHHHhccCC-------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG-------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|.+..++++.+++...-. -.-...+.+.++|.+|+|||+||+.+++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 3588999999888887643210 00123466889999999999999999973 22222 222211
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc------c-----cchhhhhhhcCC-CCCcEEE
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY------K-----KWDPFFSCLKNG-HHESKIL 320 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~-----~~~~l~~~l~~~-~~gs~ii 320 (832)
++. ... .....+.+...+.......+.+|++|+++.... . ....+...+... ..+.-++
T Consensus 247 ~i~----~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EIM----SKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HHh----ccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 111 000 001112222333333345678999999843210 0 112233333221 2233344
Q ss_pred E-EeCCHHH-HHHhC----CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh
Q 003300 321 I-TTRDRSV-ALQLG----SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL 384 (832)
Q Consensus 321 v-Ttr~~~~-~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 384 (832)
+ ||....- ...+. -...+.+...+.++-.+++....-.... .. ......+++.+.|+--
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cc----ccCHHHHHHhCCCCCH
Confidence 4 5544321 11111 1346788888888888888865422111 11 1224678888888643
No 246
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.47 E-value=0.019 Score=57.69 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=55.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccC-CeeEEEEeCCCc-cHHHHHHHHHHHhCCC-------CCCCCcHHHH-
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTF-EGIRVAKAIIEGLGVS-------ASGLSEFESL- 275 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~- 275 (832)
.-..++|.|.+|+|||||++++++ ..+.+| +.++++-+++.. .+.++...+...-... ..+.....+.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446799999999999999999998 444455 456666676654 3455666555432111 1122222211
Q ss_pred ----HHHHHHHH---cCCceEEEEeCC
Q 003300 276 ----MKQIQEYI---MGKKFFLVLDDV 295 (832)
Q Consensus 276 ----~~~l~~~l---~~k~~LlVlDdv 295 (832)
.-.+.+++ +++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 22345565 389999999998
No 247
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.47 E-value=0.0096 Score=60.62 Aligned_cols=133 Identities=26% Similarity=0.317 Sum_probs=71.8
Q ss_pred ecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcCh-hhhccCCeeEE----EEeCCCc--------
Q 003300 183 CGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNND-EVKRNFEKVIW----VCVSDTF-------- 249 (832)
Q Consensus 183 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~w----v~~~~~~-------- 249 (832)
-+|..+-.--.++|..+ .+..|.+.|.+|.|||-||.+..-.. ..++.|..++- +.++++.
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 34555555555666654 67899999999999999997655432 23455554332 2233321
Q ss_pred -cHHHHHHHHHHHhCCCC-CCCCcHHHHHHHH-H---------HHHcCC---ceEEEEeCCCCCCcccchhhhhhhcCCC
Q 003300 250 -EGIRVAKAIIEGLGVSA-SGLSEFESLMKQI-Q---------EYIMGK---KFFLVLDDVWDGDYKKWDPFFSCLKNGH 314 (832)
Q Consensus 250 -~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l-~---------~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 314 (832)
.+.-.++.|...+..-. ..... ....+.+ . .+.+++ +-+||+|.+.+-++.+ +...+-..+
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphe---ikTiltR~G 376 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHE---LKTILTRAG 376 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHH---HHHHHHhcc
Confidence 11112333333332110 01111 1112222 1 233444 3589999997655444 444455678
Q ss_pred CCcEEEEEeCC
Q 003300 315 HESKILITTRD 325 (832)
Q Consensus 315 ~gs~iivTtr~ 325 (832)
.||||+.|.--
T Consensus 377 ~GsKIVl~gd~ 387 (436)
T COG1875 377 EGSKIVLTGDP 387 (436)
T ss_pred CCCEEEEcCCH
Confidence 89999998753
No 248
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.47 E-value=0.029 Score=62.00 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=80.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
..+-|.++|++|.|||.+|+++++. ....| +-++.+. +. ... .+ .+...+.+.+...-..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------l~----~~~----vG-ese~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------LF----GGI----VG-ESESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------hc----ccc----cC-hHHHHHHHHHHHHHhc
Confidence 4567899999999999999999983 22221 2222211 11 000 00 1111222222222235
Q ss_pred CceEEEEeCCCCCCc--cc----------chhhhhhhcCCCCCcEEEEEeCCHHHHH-Hh----CCcCeeeCCCCChHHH
Q 003300 286 KKFFLVLDDVWDGDY--KK----------WDPFFSCLKNGHHESKILITTRDRSVAL-QL----GSIDIIPVKELGEGEC 348 (832)
Q Consensus 286 k~~LlVlDdv~~~~~--~~----------~~~l~~~l~~~~~gs~iivTtr~~~~~~-~~----~~~~~~~l~~L~~~~~ 348 (832)
.+++|++|+++..-. .. ...+...+.....+.-||.||....... .+ .-...+.++..+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 789999999853100 00 1112222222233444666776543211 11 1245788988899999
Q ss_pred HHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 349 CLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 349 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
.++|..+......... . ......+++.+.|+-
T Consensus 398 ~~Il~~~l~~~~~~~~-~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 398 EKIFKIHLQKFRPKSW-K--KYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHhhcCCCcc-c--ccCHHHHHhhcCCCC
Confidence 9999887654321110 0 112356677777653
No 249
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.47 E-value=0.032 Score=66.15 Aligned_cols=179 Identities=15% Similarity=0.085 Sum_probs=93.1
Q ss_pred CceecchhhHHHHHHHHhccCCC-------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGE-------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|.+..++++.+.+.-+-.. .....+-+.++|.+|.|||++|+++++. ....| +.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f---i~v~~~------ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF---IAVRGP------ 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH------
Confidence 35778777777776655421100 0123456889999999999999999984 22222 222111
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCC--------cc----cchhhhhhhcC--CCCCcE
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGD--------YK----KWDPFFSCLKN--GHHESK 318 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~----~~~~l~~~l~~--~~~gs~ 318 (832)
+ ++... -......+...+...-+..+.+|++|+++.-. .. ....+...+.. ...+.-
T Consensus 522 ~----l~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 E----ILSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred H----Hhhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 11111 01111222222222334567899999984310 00 01122223322 123444
Q ss_pred EEEEeCCHHHHHH--h---CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 319 ILITTRDRSVALQ--L---GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 319 iivTtr~~~~~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
||.||........ . .-...+.+...+.++-.++|..+...... ....+ ...+++.+.|+-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHcCCCC
Confidence 6667765543322 1 12457888888999888998766532211 11222 356777787753
No 250
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.46 E-value=0.0023 Score=56.75 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|+|.|.+|+||||+|+.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 251
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.46 E-value=0.015 Score=59.96 Aligned_cols=88 Identities=23% Similarity=0.237 Sum_probs=48.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC-ccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
..++++++|.+|+||||++..++.....+..-..+..|+.... ......+....+.++.+.....+...+...+.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 4579999999999999999888763222211134666665431 122333334444555543333344444444443 33
Q ss_pred CCceEEEEeCC
Q 003300 285 GKKFFLVLDDV 295 (832)
Q Consensus 285 ~k~~LlVlDdv 295 (832)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777754
No 252
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.46 E-value=0.013 Score=59.31 Aligned_cols=57 Identities=28% Similarity=0.315 Sum_probs=39.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhc----cCCeeEEEEeCCCccHHHHHHHHHHHhC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEGIRVAKAIIEGLG 263 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 263 (832)
...+.=|+|.+|+|||.|+.+++-...... .=..++||+-...++.+.+. +|++..+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 345777999999999999987764322221 12369999999989887765 4666544
No 253
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.46 E-value=0.0028 Score=58.87 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=82.1
Q ss_pred CcEEecCCCccccccccCC-CCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 463 SPFRLHSNLIREIPKNVGK-LIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~-l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
+.++|.+..+..+-. ++. +-....+||++|.+..++. |..+..|.+|.+++|.+...-|.--..+++|..|.+.+|.
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 556666666554422 332 3456788999998887754 7788999999999987544444323356779999998885
Q ss_pred Cccccc--CCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCC
Q 003300 542 SLKYMP--VGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGL 593 (832)
Q Consensus 542 ~~~~~p--~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~ 593 (832)
+. .+- ..+..|+.|+.|. +.+|........-.--+-.+++|+.++....
T Consensus 100 i~-~l~dl~pLa~~p~L~~Lt--ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQ-ELGDLDPLASCPKLEYLT--LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hh-hhhhcchhccCCccceee--ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 43 222 2256777888887 6666655434444444567777777777654
No 254
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.45 E-value=0.023 Score=52.18 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=62.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC---ccHHHHHHHHHHHh-----CCCC----CCC-Cc---
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT---FEGIRVAKAIIEGL-----GVSA----SGL-SE--- 271 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l-----~~~~----~~~-~~--- 271 (832)
..|-|++-.|.||||+|...+- +...+=..+.+|.+-+. ......+..+ ..+ +... ... .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4688888889999999977765 33333334666554332 2333333332 111 1100 000 11
Q ss_pred HHHHHHHHHHHHc-CCceEEEEeCCCCC---CcccchhhhhhhcCCCCCcEEEEEeCCHH
Q 003300 272 FESLMKQIQEYIM-GKKFFLVLDDVWDG---DYKKWDPFFSCLKNGHHESKILITTRDRS 327 (832)
Q Consensus 272 ~~~~~~~l~~~l~-~k~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 327 (832)
.....+..++.+. ++-=|+|||++-.. ..-..+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1112222333343 34559999998321 22344556666666666778999999854
No 255
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.42 E-value=0.013 Score=60.50 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=55.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCC-----CCCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSA-----SGLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 280 (832)
.-+++-|+|.+|+||||||.+++.. ....-..++||+....++.. .+++++... ......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5679999999999999999887763 33334568899887766653 345554431 12234555566665
Q ss_pred HHHc-CCceEEEEeCC
Q 003300 281 EYIM-GKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv 295 (832)
...+ +..-+||+|-+
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 5554 45668999988
No 256
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00094 Score=65.51 Aligned_cols=78 Identities=23% Similarity=0.213 Sum_probs=49.4
Q ss_pred CcEEecCCCcccc---ccccCCCCceeEEEeCCcCcccccccc-cCCCcccEEeccCccCc-cccCcccccccCCceeec
Q 003300 463 SPFRLHSNLIREI---PKNVGKLIHLRYLNLSELGIERLPKTL-CELYNLQKLDIRRCRNL-KELPAGIGKLKNMRSLLN 537 (832)
Q Consensus 463 r~L~L~~n~l~~l---p~~l~~l~~L~~L~Ls~~~i~~lp~~~-~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~l 537 (832)
+.|||.+|.|..- -..+.++++|++|+|+.|.+...-..+ -.+.+|++|.|.|.... ....+.+..++.++.|++
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 6778888877653 333557888888888888765322222 34567888888773321 233344667777777777
Q ss_pred CCc
Q 003300 538 GET 540 (832)
Q Consensus 538 ~~~ 540 (832)
+.|
T Consensus 154 S~N 156 (418)
T KOG2982|consen 154 SDN 156 (418)
T ss_pred ccc
Confidence 766
No 257
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.39 E-value=0.037 Score=52.89 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=68.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEE---eCCCccHHHH------HHHHHHHhCCCC------CCCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---VSDTFEGIRV------AKAIIEGLGVSA------SGLS 270 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~------~~~i~~~l~~~~------~~~~ 270 (832)
.-.+++|+|..|.|||||++.++.. .......+++. +.. .+.... ..++++.++... ....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3458999999999999999999973 22334444442 211 111111 112445554421 1112
Q ss_pred cHHHHHHHHHHHHcCCceEEEEeCCCC-CCcccchhhhhhhcCC-CC-CcEEEEEeCCHHHHHH
Q 003300 271 EFESLMKQIQEYIMGKKFFLVLDDVWD-GDYKKWDPFFSCLKNG-HH-ESKILITTRDRSVALQ 331 (832)
Q Consensus 271 ~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~~~~~ 331 (832)
..+...-.+.+.+-..+-++++|+.-. -+....+.+...+..- .. +.-||++|.+......
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 233333345666667788999998732 1223334444444332 22 5678999988776544
No 258
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.032 Score=55.83 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=50.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhh--hccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEV--KRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
-|+|.++|++|.|||+|.++.++...+ ...|....-+.++ ...++.....+- ..-+..+.++|++...
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsES------gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSES------GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhhh------hhHHHHHHHHHHHHHh
Confidence 388999999999999999999986433 3445444444333 223343333332 2335666777777776
Q ss_pred CCce--EEEEeCC
Q 003300 285 GKKF--FLVLDDV 295 (832)
Q Consensus 285 ~k~~--LlVlDdv 295 (832)
++.. ++.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 6553 4467888
No 259
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.37 E-value=0.028 Score=58.91 Aligned_cols=71 Identities=7% Similarity=0.105 Sum_probs=45.9
Q ss_pred CCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH-HHHHh-CCcCeeeCCCCChHHHHHHHHHH
Q 003300 285 GKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS-VALQL-GSIDIIPVKELGEGECCLLFKQI 355 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 355 (832)
+++-++|+|++..-+...-..+...+.....+..+|++|.+.. +...+ .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688866555555556666655445566777777654 33222 33678999999999998888653
No 260
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.053 Score=60.11 Aligned_cols=162 Identities=19% Similarity=0.057 Sum_probs=85.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc--cHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 283 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 283 (832)
...-|.|.|..|+|||+||+++++... +..+-++.+|+++.-- ..+.+++.+ ...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHH
Confidence 456788999999999999999998533 4455567777765321 122222111 12233345
Q ss_pred cCCceEEEEeCCCC------CCcccchhhhh----hh----cC-CCCCcEE--EEEeCCHHHHH-HhCC----cCeeeCC
Q 003300 284 MGKKFFLVLDDVWD------GDYKKWDPFFS----CL----KN-GHHESKI--LITTRDRSVAL-QLGS----IDIIPVK 341 (832)
Q Consensus 284 ~~k~~LlVlDdv~~------~~~~~~~~l~~----~l----~~-~~~gs~i--ivTtr~~~~~~-~~~~----~~~~~l~ 341 (832)
...+.+|||||++- .+..+|..... ++ .. ...+.+| |.|.....-.. .+.. ...+.+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 56889999999843 11123322111 11 11 2344553 44443322111 1111 2356788
Q ss_pred CCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC-hhHHHHH
Q 003300 342 ELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL-PLAAKVI 389 (832)
Q Consensus 342 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 389 (832)
.+...+-.++++........ ....+...-+..+|+|+ |.-+.++
T Consensus 572 ap~~~~R~~IL~~~~s~~~~----~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLS----DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHHHhhhh----hhhhHHHHHHHHhcCCccchhHHHH
Confidence 88777776666654322111 11222333488889886 4444443
No 261
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.32 E-value=0.017 Score=59.79 Aligned_cols=83 Identities=23% Similarity=0.258 Sum_probs=54.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCC-----CCCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSA-----SGLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 280 (832)
.-+++-|+|.+|+||||||.+++.. ....-..++||+....++.. .+++++... ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 5678889999999999999887763 33344578899887776653 334444321 11224455555555
Q ss_pred HHHc-CCceEEEEeCC
Q 003300 281 EYIM-GKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv 295 (832)
...+ +..-+||+|-+
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 5554 44568888887
No 262
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.061 Score=56.62 Aligned_cols=90 Identities=12% Similarity=0.241 Sum_probs=51.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC-ccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
..++|+++|.+|+||||++..++.. ....=..+..++.... ....+-+....+.++.+.....+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4589999999999999999988863 2222224555554321 223333444445555543333445555555544322
Q ss_pred C-CceEEEEeCCCC
Q 003300 285 G-KKFFLVLDDVWD 297 (832)
Q Consensus 285 ~-k~~LlVlDdv~~ 297 (832)
. +.=+|++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234778887743
No 263
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.011 Score=67.43 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=85.9
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh-ccC-----CeeEEEEeCCCccHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK-RNF-----EKVIWVCVSDTFEGIRV 254 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f-----~~~~wv~~~~~~~~~~~ 254 (832)
.++||++|++++++.|..... + --.++|.+|||||++|.-++. ++. +.- +..++. .+
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K----N--NPvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s-----LD---- 233 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK----N--NPVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS-----LD---- 233 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC----C--CCeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE-----ec----
Confidence 489999999999999986543 1 124689999999999987776 321 111 111111 01
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHc-CCceEEEEeCCCCC-----Ccc-cch--h-hhhhhcCCCCCcEEEEEeC
Q 003300 255 AKAIIEGLGVSASGLSEFESLMKQIQEYIM-GKKFFLVLDDVWDG-----DYK-KWD--P-FFSCLKNGHHESKILITTR 324 (832)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-----~~~-~~~--~-l~~~l~~~~~gs~iivTtr 324 (832)
+ ..+-....-..+.++....+.+.++ .++.+|++|.++.. ... ..| . +.+++..+ .-+.|-.|.
T Consensus 234 ---~-g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT 307 (786)
T COG0542 234 ---L-GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATT 307 (786)
T ss_pred ---H-HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEecc
Confidence 1 1111112223345555555555553 55899999998651 100 122 2 33333322 234444444
Q ss_pred CHHHHHHh-------CCcCeeeCCCCChHHHHHHHHHHh
Q 003300 325 DRSVALQL-------GSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 325 ~~~~~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
..+--..+ ...+.+.+...+.+++...+.-..
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 33222221 235688999999999998887544
No 264
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.28 E-value=0.03 Score=53.49 Aligned_cols=118 Identities=19% Similarity=0.107 Sum_probs=61.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCC--C-------------CCCCCc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGV--S-------------ASGLSE 271 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~-------------~~~~~~ 271 (832)
-.+++|.|..|.|||||++.++.... .....+++.-. +.......+-..++. + ......
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 35899999999999999999987421 22233333211 111110111111110 0 001111
Q ss_pred HHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCCCCCcEEEEEeCCHHHHH
Q 003300 272 FESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTRDRSVAL 330 (832)
Q Consensus 272 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 330 (832)
.+...-.+.+.+-.++-++++|+.... +....+.+...+..-.++.-||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 223333455666677888999987432 22233334444433223667899998887664
No 265
>PRK06696 uridine kinase; Validated
Probab=96.28 E-value=0.0088 Score=59.44 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 185 RVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 185 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
|++-+++|.+.+..... +...+|+|.|.+|+||||+|+.++.
T Consensus 3 ~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHH
Confidence 66677888887765322 4678999999999999999999997
No 266
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.28 E-value=0.024 Score=57.05 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=36.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhcc----CCeeEEEEeCCCccHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEGIRVA 255 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~ 255 (832)
.-.++.|+|.+|+|||++|.+++........ -..++|++....++.+.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 5678999999999999999988743222211 3579999988777655443
No 267
>PHA00729 NTP-binding motif containing protein
Probab=96.27 E-value=0.026 Score=54.89 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+...|.|+|.+|+||||||..+++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999999987
No 268
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.26 E-value=0.0025 Score=36.69 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=12.8
Q ss_pred ceeEEEeCCcCcccccccccC
Q 003300 484 HLRYLNLSELGIERLPKTLCE 504 (832)
Q Consensus 484 ~L~~L~Ls~~~i~~lp~~~~~ 504 (832)
+|++|+|++|.++.+|..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665544
No 269
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.00032 Score=68.00 Aligned_cols=95 Identities=22% Similarity=0.225 Sum_probs=64.4
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCc--ccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPA--GIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~l~~~ 540 (832)
+.|+..+|.+..+ +.+.+++.|++|.||-|.|+.+.. +..|++|++|+|+.|. +..+.+ -+.++++|+.|.|..|
T Consensus 22 kKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 22 KKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccC
Confidence 3455666777665 345578888888888888887743 7888888888888865 333322 2567788888888877
Q ss_pred cCcccccCC-----CCCCCCCccCC
Q 003300 541 YSLKYMPVG-----ISKLTSLRTLD 560 (832)
Q Consensus 541 ~~~~~~p~~-----l~~L~~L~~L~ 560 (832)
.....-+.. +.-|++|+.|+
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 655444322 44567777776
No 270
>PRK09354 recA recombinase A; Provisional
Probab=96.24 E-value=0.02 Score=59.69 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=55.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCC-----CCCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSA-----SGLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 280 (832)
.-+++-|+|.+|+||||||.+++.. ....-..++||+....++.. .+++++... ......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5678999999999999999888763 33334578999888777753 344554431 11223555555555
Q ss_pred HHHc-CCceEEEEeCC
Q 003300 281 EYIM-GKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv 295 (832)
...+ +..-+||+|-+
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 5554 45568888887
No 271
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.23 E-value=0.022 Score=59.31 Aligned_cols=58 Identities=26% Similarity=0.326 Sum_probs=41.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhh----ccCCeeEEEEeCCCccHHHHHHHHHHHhCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFEGIRVAKAIIEGLGV 264 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 264 (832)
.-.++-|+|.+|+|||+|+.+++-..... ..=..++||+....++++.+. +++++++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 56788899999999999998766422221 112479999999888888765 45666654
No 272
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.23 E-value=0.043 Score=50.18 Aligned_cols=107 Identities=22% Similarity=0.222 Sum_probs=60.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
.-.+++|+|..|.|||||++.+.... ......+|+.-.. .++.-. .....+...-.+.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhc
Confidence 34689999999999999999998742 2233444442100 000000 012222233345566666
Q ss_pred CceEEEEeCCCC-CCcccchhhhhhhcCCCCCcEEEEEeCCHHHHHH
Q 003300 286 KKFFLVLDDVWD-GDYKKWDPFFSCLKNGHHESKILITTRDRSVALQ 331 (832)
Q Consensus 286 k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~ 331 (832)
++-++++|+.-. -+....+.+...+... +.-||++|.+......
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 778899998733 2333344444444432 2358888888766544
No 273
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.22 E-value=0.0036 Score=58.86 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=52.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhh-ccCCeeEEEEeCCCccHH---HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSDTFEGI---RVAKAIIEGLGVSASGLSEFESLMKQIQEY 282 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 282 (832)
..++.+.|+.|+|||++|+.++. ... +.....+-++++.-.... .........-. . ... .
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~----~--~v~-------~- 66 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPP----G--YVG-------A- 66 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTT----C--HHH-------H-
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhccc----c--eee-------c-
Confidence 46788999999999999999997 333 344566666665433311 11111111100 0 000 0
Q ss_pred HcCCceEEEEeCCCCCCc-----------ccchhhhhhhcC
Q 003300 283 IMGKKFFLVLDDVWDGDY-----------KKWDPFFSCLKN 312 (832)
Q Consensus 283 l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~ 312 (832)
...-+|+||+++..+. ..+..|...+..
T Consensus 67 --~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 67 --EEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp --HHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred --cchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 1112999999988877 667777776643
No 274
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.21 E-value=0.00083 Score=64.97 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=23.8
Q ss_pred ccCCCCceeEEEeCCcCcc-cccc----cccCCCcccEEeccCcc
Q 003300 478 NVGKLIHLRYLNLSELGIE-RLPK----TLCELYNLQKLDIRRCR 517 (832)
Q Consensus 478 ~l~~l~~L~~L~Ls~~~i~-~lp~----~~~~l~~L~~L~L~~~~ 517 (832)
.+-+|++|+..+||.|.+. ..|+ .++.-+.|.+|.+++|.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 3456677777777777654 2322 34555667777776654
No 275
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.20 E-value=0.047 Score=53.11 Aligned_cols=125 Identities=22% Similarity=0.239 Sum_probs=70.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEE----------------------eCCCc------c-------
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC----------------------VSDTF------E------- 250 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----------------------~~~~~------~------- 250 (832)
.-..++|+|++|+|||||...+..-.+ .-...+++. +.|.+ +
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 345899999999999999998875211 111122211 01111 1
Q ss_pred -----------HHHHHHHHHHHhCCCC------C-CCCcHHHHHHHHHHHHcCCceEEEEeCCCC-CCcccchhhhhhhc
Q 003300 251 -----------GIRVAKAIIEGLGVSA------S-GLSEFESLMKQIQEYIMGKKFFLVLDDVWD-GDYKKWDPFFSCLK 311 (832)
Q Consensus 251 -----------~~~~~~~i~~~l~~~~------~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~ 311 (832)
..+....+++.++... + ...-.++-.-.+.+.+-..+-+|+-|+--. -+.+.=+.+...+.
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~ 186 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLR 186 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHH
Confidence 1233444555555531 1 223344445567788888889999997411 12222233333333
Q ss_pred CC--CCCcEEEEEeCCHHHHHHhC
Q 003300 312 NG--HHESKILITTRDRSVALQLG 333 (832)
Q Consensus 312 ~~--~~gs~iivTtr~~~~~~~~~ 333 (832)
.. ..|.-||+.|.++.++..+.
T Consensus 187 ~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 187 ELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHhcCCEEEEEcCCHHHHHhCC
Confidence 32 34667999999999997643
No 276
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.034 Score=52.69 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=62.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC--CccHHHHHHHHHHHhCC--CCCC----------CCc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEGIRVAKAIIEGLGV--SASG----------LSE 271 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~~~----------~~~ 271 (832)
.-.+++|+|..|.|||||.+.++.-. ......+++.-.. ....... ...++. +... ...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 34589999999999999999998732 2233444332110 0011111 111110 0000 111
Q ss_pred HHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCCCCCcEEEEEeCCHHHHHH
Q 003300 272 FESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTRDRSVALQ 331 (832)
Q Consensus 272 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~ 331 (832)
.+...-.+.+.+-.++-++++|+-... +....+.+...+..-..+.-||++|.+......
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 122223355666677889999987432 223333444444332235668899988776643
No 277
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.16 E-value=0.082 Score=57.51 Aligned_cols=87 Identities=26% Similarity=0.206 Sum_probs=51.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCCC---CCcHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSASG---LSEFESLMKQIQE 281 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 281 (832)
...+|.++|..|+||||.|..++.. ....-..+..|++.. .....+.+..+..+++.+... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 5789999999999999999988863 332222455555432 122345566677777664321 2233333333333
Q ss_pred HHcCCceEEEEeCC
Q 003300 282 YIMGKKFFLVLDDV 295 (832)
Q Consensus 282 ~l~~k~~LlVlDdv 295 (832)
..++. =+||+|..
T Consensus 172 ~~~~~-DvVIIDTA 184 (437)
T PRK00771 172 KFKKA-DVIIVDTA 184 (437)
T ss_pred HhhcC-CEEEEECC
Confidence 33343 56888887
No 278
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.027 Score=61.60 Aligned_cols=89 Identities=21% Similarity=0.199 Sum_probs=48.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
..++++|+|.+|+||||++..++.....++....+..++... .....+.+......++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 457999999999999999988876322222123455555432 1222233333334444433223333444444433 33
Q ss_pred CCceEEEEeCCC
Q 003300 285 GKKFFLVLDDVW 296 (832)
Q Consensus 285 ~k~~LlVlDdv~ 296 (832)
+ .=+|++|..-
T Consensus 428 ~-~DLVLIDTaG 438 (559)
T PRK12727 428 D-YKLVLIDTAG 438 (559)
T ss_pred c-CCEEEecCCC
Confidence 3 4577888873
No 279
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.14 E-value=0.19 Score=52.02 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=42.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVA 255 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 255 (832)
+.++=..+....+..++... +.|.|.|.+|+||||+|+.++. +.... .+.|.++...+..++.
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhcC
Confidence 34555555667777777542 3599999999999999999997 33322 3456666665554443
No 280
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.10 E-value=0.0021 Score=62.42 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=37.7
Q ss_pred CCCceeEEEeCCcCcccccccccCCCcccEEeccCc--cCccccCcccccccCCceeecCCccC
Q 003300 481 KLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRC--RNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 481 ~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~--~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
.+..|+.|++.+..++.+ ..+..|++|+.|.++.| .....++.-..++++|++|++++|++
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 445566666666665544 22555777777777777 44444554455667777777777743
No 281
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.10 E-value=0.052 Score=59.19 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=49.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc-cHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
.+++.++|.+|+||||++..++........-..+..|+....- .....+....+.++.+.....+...+...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 4689999999999999998776532211223457777654321 12233334445555543333344444444443 23
Q ss_pred CceEEEEeCC
Q 003300 286 KKFFLVLDDV 295 (832)
Q Consensus 286 k~~LlVlDdv 295 (832)
..=+|++|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3457888976
No 282
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.09 E-value=0.042 Score=51.91 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=62.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcCh---hhhcc---CC--eeEEEEeCCCccHHHHHHHHHHHhCCCCC-------CCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNND---EVKRN---FE--KVIWVCVSDTFEGIRVAKAIIEGLGVSAS-------GLS 270 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~ 270 (832)
.-.+++|+|..|.|||||.+.+..+. .+... |. .+.|+ .+ .+.+..++.... ...
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886321 11111 10 13332 21 345566654321 111
Q ss_pred cHHHHHHHHHHHHcCC--ceEEEEeCCCC-CCcccchhhhhhhcC-CCCCcEEEEEeCCHHHHH
Q 003300 271 EFESLMKQIQEYIMGK--KFFLVLDDVWD-GDYKKWDPFFSCLKN-GHHESKILITTRDRSVAL 330 (832)
Q Consensus 271 ~~~~~~~~l~~~l~~k--~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~~~ 330 (832)
..+...-.+.+.+-.+ +-++++|+.-. -+....+.+...+.. ...|.-||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2233333455555556 77888998732 122333334444433 124667999999887653
No 283
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.08 E-value=0.019 Score=52.57 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999885
No 284
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.05 E-value=0.035 Score=58.25 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=42.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhh----hccCCeeEEEEeCCCccHHHHHHHHHHHhCCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEV----KRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVS 265 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 265 (832)
...++-|+|.+|+|||+|+.+++-.... .+.-..++||+....++++.+.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 5578889999999999999887643222 11224799999999888887654 55666543
No 285
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.04 E-value=0.027 Score=52.75 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=64.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC--CccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
-.+++|.|..|.|||||.+.++.. .......+++.-.. ..+..+..+ ..++.-. .....+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHh
Confidence 458999999999999999999873 22344555543211 111111111 1111100 12223333344556666
Q ss_pred CCceEEEEeCCCC-CCcccchhhhhhhcC-CCCCcEEEEEeCCHHHHHH
Q 003300 285 GKKFFLVLDDVWD-GDYKKWDPFFSCLKN-GHHESKILITTRDRSVALQ 331 (832)
Q Consensus 285 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~~~~ 331 (832)
.++-++++|+.-. -+....+.+...+.. ...|.-||++|.+......
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7788899998733 122333444444433 2236668899988765443
No 286
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.03 E-value=0.066 Score=50.36 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=61.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhh-hcc--CC---eeEEEEeCCCcc--HHHHHHHHHHHhCCCCCCCCcHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEV-KRN--FE---KVIWVCVSDTFE--GIRVAKAIIEGLGVSASGLSEFESLMK 277 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~ 277 (832)
.-.+++|+|..|.|||||++.++..... .+. ++ .+.++ .+... ...+...+... ........+...-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 3458999999999999999999874221 111 11 12222 22211 11222222210 1122233333344
Q ss_pred HHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCCCCCcEEEEEeCCHHHH
Q 003300 278 QIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTRDRSVA 329 (832)
Q Consensus 278 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~ 329 (832)
.+.+.+-.++-++++|+--.. +......+...+... +.-||++|.+....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 455666677788899986321 222333344444332 35588888887654
No 287
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.052 Score=58.00 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=55.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhh--ccCCeeEEEEeCCC-ccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVK--RNFEKVIWVCVSDT-FEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY 282 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 282 (832)
..+++.++|..|+||||.+..++...... .+-..+..|++..- ......++...+.++.+-....+.+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45799999999999999998887632221 11234566655432 2233446666777777544444555555545443
Q ss_pred HcCCceEEEEeCCCCC
Q 003300 283 IMGKKFFLVLDDVWDG 298 (832)
Q Consensus 283 l~~k~~LlVlDdv~~~ 298 (832)
.+.-++++|.+-..
T Consensus 253 --~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 --KDFDLVLVDTIGKS 266 (388)
T ss_pred --CCCCEEEEcCCCCC
Confidence 34568889988443
No 288
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.02 E-value=0.045 Score=62.37 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=73.0
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
...++|....++++.+.+..-.. ...-|.|+|..|+|||++|+.++..... .-...+.|++..-.+ ..+-..+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~~-~~~~~~l 267 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALSE-TLLESEL 267 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCCH-HHHHHHH
Confidence 45799999999998887765432 3345789999999999999999974211 112344555544322 1111112
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEeCC
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTRD 325 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 325 (832)
+..-.....+... . .....-....-.|+||++..-.......+...+..+. ...|||.||..
T Consensus 268 fg~~~~~~~~~~~--~---~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 268 FGHEKGAFTGAIA--Q---RKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred cCCCCCccCCCCc--C---CCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 1100000000000 0 0000011233468899997665555566666554321 12588887754
No 289
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.01 E-value=0.06 Score=50.95 Aligned_cols=106 Identities=19% Similarity=0.088 Sum_probs=59.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEE------eCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC------VSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQI 279 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 279 (832)
.-.+++|+|..|.|||||++.+..-. ......+++. +.+... ....+...-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHH
Confidence 34589999999999999999998732 2223333321 111110 22223333345
Q ss_pred HHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCC-CC-CcEEEEEeCCHHHHHHh
Q 003300 280 QEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNG-HH-ESKILITTRDRSVALQL 332 (832)
Q Consensus 280 ~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~~~~~~ 332 (832)
.+.+..++-++++|+--.. +....+.+...+... .. +.-||++|.+......+
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence 5666677889999987321 222223333333321 12 25588888887766543
No 290
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.00 E-value=0.0053 Score=67.22 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=40.2
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+++|.++.+++|++.|.....+-....+++.++|+.|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433222234568999999999999999999997
No 291
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.027 Score=59.60 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=52.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
..+++.++|..|+||||++..++.....+.....+..++... .....+.++...+.++.+.....+...+...+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 346899999999999999998887322221223566665332 233455566666677765433333233333333 344
Q ss_pred CCceEEEEeCCC
Q 003300 285 GKKFFLVLDDVW 296 (832)
Q Consensus 285 ~k~~LlVlDdv~ 296 (832)
++ =++++|..-
T Consensus 215 ~~-DlVLIDTaG 225 (374)
T PRK14722 215 NK-HMVLIDTIG 225 (374)
T ss_pred CC-CEEEEcCCC
Confidence 44 456688873
No 292
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.99 E-value=0.049 Score=57.40 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=40.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhcc----CCeeEEEEeCCCccHHHHHHHHHHHhC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEGIRVAKAIIEGLG 263 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 263 (832)
...++-|+|.+|+|||+++.+++........ =..++||+....++++.+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 5678889999999999999888754222111 14799999988888776554 444444
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.98 E-value=0.064 Score=58.18 Aligned_cols=89 Identities=25% Similarity=0.248 Sum_probs=46.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCC---CCCcHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSAS---GLSEFESLMKQIQE 281 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 281 (832)
...++.++|.+|+||||.|..++.....+.. ..+..|++.. .....+.+.......+.+.. ...+...+.....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 4679999999999999999877763111111 2344454432 11223334444555554421 12233333333333
Q ss_pred HHcCCce-EEEEeCC
Q 003300 282 YIMGKKF-FLVLDDV 295 (832)
Q Consensus 282 ~l~~k~~-LlVlDdv 295 (832)
....+.+ ++|+|-.
T Consensus 177 ~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 177 YAKENGFDVVIVDTA 191 (428)
T ss_pred HHHhcCCCEEEEeCC
Confidence 3333444 6777765
No 294
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.97 E-value=0.046 Score=57.11 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=40.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhc----cCCeeEEEEeCCCccHHHHHHHHHHHhCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEGIRVAKAIIEGLGV 264 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 264 (832)
...++.|+|.+|+|||+|+..++....... .-..++|++....++.+. +.++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 568899999999999999988875322211 113679999888777765 3445555544
No 295
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.97 E-value=0.066 Score=51.84 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=52.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH-H--
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY-I-- 283 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l-- 283 (832)
-+++.|.|.+|.||||+++.+... .... ...+.+.......... +.+..+... .++.......... .
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~a---~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIEA---QTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS-E---EEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcch---hhHHHHHhcCCcccccc
Confidence 357889999999999999988763 2222 2233333333222222 222222210 1110000000000 0
Q ss_pred ---cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH
Q 003300 284 ---MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS 327 (832)
Q Consensus 284 ---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 327 (832)
..++-+||+|++...+...+..+...... .|.|+|+.-=...
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999966555556666555543 4778888765443
No 296
>PRK13695 putative NTPase; Provisional
Probab=95.96 E-value=0.014 Score=55.44 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 297
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.054 Score=51.38 Aligned_cols=120 Identities=20% Similarity=0.189 Sum_probs=62.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCC--CC---CC---------CCc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGV--SA---SG---------LSE 271 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~---~~---------~~~ 271 (832)
.-.+++|+|..|.|||||++.++... ......+++.-..-.... ..+...++. +. .. ...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 34589999999999999999998742 223344443211000000 001011110 00 00 111
Q ss_pred HHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC-CCCCcEEEEEeCCHHHHHH
Q 003300 272 FESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTRDRSVALQ 331 (832)
Q Consensus 272 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~~~~ 331 (832)
.+...-.+.+.+..++-++++|+.-.. +....+.+...+.. ...|.-||++|.+......
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 222233456667778889999997331 22233334444433 1236678999998776654
No 298
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.95 E-value=0.023 Score=59.92 Aligned_cols=135 Identities=12% Similarity=0.064 Sum_probs=72.6
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
..++|+...++++.+.+..-.. ...-|.|+|..|+||+++|+.++.... ..-...+.|++..-. ...+...++
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCCC-HHHHHHHHc
Confidence 3589999999888887765432 334688999999999999999986311 111234455555432 222222222
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEeCCH
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTRDR 326 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 326 (832)
..-.....+... .....+ -....=.|+||++..-.......+...+..+. ...|||.||...
T Consensus 79 g~~~~~~~g~~~--~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 79 GHEAGAFTGAQK--RHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred cccccccCCccc--ccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 111000000000 000111 11223357899997665555556666554321 135888877643
No 299
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.95 E-value=0.044 Score=53.69 Aligned_cols=205 Identities=11% Similarity=0.100 Sum_probs=111.4
Q ss_pred eecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC----hhhhccCCeeEEEEeCCC---------
Q 003300 182 VCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN----DEVKRNFEKVIWVCVSDT--------- 248 (832)
Q Consensus 182 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~f~~~~wv~~~~~--------- 248 (832)
+.++++.-.++...... +..+-+.++|++|.||-|.+..+.++ .-.+-+-+...|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 55666666666655432 25778999999999998877555543 112223345566544332
Q ss_pred -cc-----------HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc-CCce-EEEEeCCCCCCcccchhhhhhhcCCC
Q 003300 249 -FE-----------GIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM-GKKF-FLVLDDVWDGDYKKWDPFFSCLKNGH 314 (832)
Q Consensus 249 -~~-----------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 314 (832)
+. -+-+.++++.+.....+- ..+ .+.| ++|+-.+++-..+.-..++.-...-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 10 012222233222211100 011 2344 45555554444344444555554445
Q ss_pred CCcEEEEEeCCH--HHHHHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHH
Q 003300 315 HESKILITTRDR--SVALQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNL 392 (832)
Q Consensus 315 ~gs~iivTtr~~--~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 392 (832)
..+|+|+...+. -+...-+..-.+.+...+++|-...+++..-.++- .-..+++.+|+++++|.---...+-..
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l----~lp~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL----QLPKELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc----cCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 677888765432 22222233457899999999999999987754432 222778999999999975332222222
Q ss_pred hcCC--C--------CHHHHHHHHhhh
Q 003300 393 LRSK--S--------TVKEWQRILESE 409 (832)
Q Consensus 393 l~~~--~--------~~~~w~~~~~~~ 409 (832)
++-+ . ..-+|+-++.+.
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHH
Confidence 2211 0 235788776653
No 300
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.92 E-value=0.0046 Score=71.27 Aligned_cols=103 Identities=24% Similarity=0.246 Sum_probs=62.3
Q ss_pred HHHHhhcccccEEEecCccc--------cccC--CCcEEecCCCccccccccCCCCceeEEEeCCcCcccc--cccccCC
Q 003300 438 RKLFSKLACLRALVIRQSLV--------IRLS--SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERL--PKTLCEL 505 (832)
Q Consensus 438 ~~~f~~~~~Lr~L~~~~~~~--------~~~~--~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~l--p~~~~~l 505 (832)
.+.-.-++.||+|.+.+-.+ ...+ ++.||+++.+++.+ .++++|++|+.|.+.+-.+..- -..+.+|
T Consensus 141 ~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 141 KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 34455788899998877332 1223 36777777777777 6677777777777776655521 2346677
Q ss_pred CcccEEeccCccCcccc--C----cccccccCCceeecCCcc
Q 003300 506 YNLQKLDIRRCRNLKEL--P----AGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 506 ~~L~~L~L~~~~~~~~l--p----~~l~~l~~L~~L~l~~~~ 541 (832)
++|++||+|.......- . +.-..||+||.||.|++.
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 77777777764322111 0 111236777777777654
No 301
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.91 E-value=0.063 Score=53.89 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=54.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCC-------------------
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSA------------------- 266 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------- 266 (832)
...++.|+|.+|+|||++|.++... ....=..++|++.... .+++.+++ ++++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 5678999999999999999988653 2123357889888654 34454443 2332210
Q ss_pred -CCCCcHHHHHHHHHHHHcC-CceEEEEeCCC
Q 003300 267 -SGLSEFESLMKQIQEYIMG-KKFFLVLDDVW 296 (832)
Q Consensus 267 -~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 296 (832)
....+.+.+...+.+..+. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112345666666666653 56689999873
No 302
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.003 Score=61.43 Aligned_cols=114 Identities=21% Similarity=0.214 Sum_probs=71.3
Q ss_pred ccccccCCCcccEEeccCccCccccCcccccccCCceeecCCc--cCcccccCCCCCCCCCccCCceeeCCccCCCCccC
Q 003300 498 LPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET--YSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCR 575 (832)
Q Consensus 498 lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~--~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~ 575 (832)
+....-.+..|+.|.+.++. +..+ ..+-.|++|+.|.++.| .....++.-..++++|++|+ +++|.+. ....
T Consensus 35 ~~gl~d~~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~--ls~Nki~--~lst 108 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN--LSGNKIK--DLST 108 (260)
T ss_pred cccccccccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe--ecCCccc--cccc
Confidence 33444556678888887765 3222 23567899999999999 55555555566789999999 7888754 3556
Q ss_pred ccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEE
Q 003300 576 LESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRL 618 (832)
Q Consensus 576 l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 618 (832)
+..++.+.+|..+...++.... +.......+.-+++|+.|+-
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence 6666777777666665544222 22333334444455555543
No 303
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.093 Score=50.87 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=68.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhh-------------h-----ccCC--eeEEEEeCCCcc----HHHH-------
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEV-------------K-----RNFE--KVIWVCVSDTFE----GIRV------- 254 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~-----~~f~--~~~wv~~~~~~~----~~~~------- 254 (832)
.-.+++|+|.+|.|||||++.++.-.+. . ..|. ..+|-+-....+ +.++
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 4468999999999999999999762110 0 0121 123322222222 2221
Q ss_pred ---------HHHHHHHhCCCC------CCCCcH-HHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC--CCC
Q 003300 255 ---------AKAIIEGLGVSA------SGLSEF-ESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN--GHH 315 (832)
Q Consensus 255 ---------~~~i~~~l~~~~------~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~ 315 (832)
..+++++++.+. +.+-+. +.-.-.|.+.|.-++-+||+|..-+. |...-..+...+.. ...
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 334455555542 112222 22223466777778889999987321 11111222222222 234
Q ss_pred CcEEEEEeCCHHHHHHhCC
Q 003300 316 ESKILITTRDRSVALQLGS 334 (832)
Q Consensus 316 gs~iivTtr~~~~~~~~~~ 334 (832)
+--+|+.|.+-.+...++.
T Consensus 192 ~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 192 GLTYLFISHDLALVEHMCD 210 (252)
T ss_pred CceEEEEeCcHHHHHHHhh
Confidence 5568999999888776543
No 304
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.90 E-value=0.042 Score=52.16 Aligned_cols=85 Identities=27% Similarity=0.277 Sum_probs=44.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC-ccHHHHHHHHHHHhCCC---CCCCCcHHHHH-HHHHHHH
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEGIRVAKAIIEGLGVS---ASGLSEFESLM-KQIQEYI 283 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~-~~l~~~l 283 (832)
++.++|++|+||||++..++.. ....=..++.++.... ....+.+.......+.+ .....+...+. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~--~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY--LKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999988863 3222123555554322 12233344444444432 11223333333 3333333
Q ss_pred cCCceEEEEeCC
Q 003300 284 MGKKFFLVLDDV 295 (832)
Q Consensus 284 ~~k~~LlVlDdv 295 (832)
....-++|+|..
T Consensus 80 ~~~~d~viiDt~ 91 (173)
T cd03115 80 EENFDVVIVDTA 91 (173)
T ss_pred hCCCCEEEEECc
Confidence 434435667765
No 305
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.90 E-value=0.017 Score=56.12 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=58.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH-HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI-RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
+++.|+|..|.||||++..+... ........+++ +.++.... .-...+..+-.. ..+.....+.+...++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhcCC
Confidence 47899999999999999987763 32233334433 22221100 000011111010 111122345566777766
Q ss_pred ceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHH
Q 003300 287 KFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVAL 330 (832)
Q Consensus 287 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 330 (832)
+=.+++|++.+ .+.+..+.... ..|..++.|+....+..
T Consensus 75 pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 77999999943 33343333322 24556888888765543
No 306
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.052 Score=54.89 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=56.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHH-hC---CCC-CCCCcHHHHHHHH
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEG-LG---VSA-SGLSEFESLMKQI 279 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~---~~~-~~~~~~~~~~~~l 279 (832)
..-+++=|+|+.|.||||+|.+++-. .+..-..++||+....++++.+.. +... +. ... .......+++..+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 36678889999999999999887763 333444899999999898875443 3333 22 111 1122233334444
Q ss_pred HHHHcCCceEEEEeCC
Q 003300 280 QEYIMGKKFFLVLDDV 295 (832)
Q Consensus 280 ~~~l~~k~~LlVlDdv 295 (832)
.+....+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4444444678999988
No 307
>PRK07667 uridine kinase; Provisional
Probab=95.85 E-value=0.02 Score=55.41 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=29.3
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 189 KNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+.+.+.+..... ...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~----~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKE----NRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCC----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566666655432 558999999999999999999987
No 308
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.85 E-value=0.036 Score=65.23 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=74.0
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
..++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.++..... .-...+.+++..-.. ..+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~~-~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMPA-GLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCCh-hHhhhhhc
Confidence 4699999988888776664332 3346889999999999999999874211 112345555554321 11111121
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEeCCH
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTRDR 326 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 326 (832)
........+. . ......+ -....=.|+||++..-.......+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~-~-~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGA-S-AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccccccc-c-cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111110010 0 0011111 11233468999997665555555666553321 345888888653
No 309
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.021 Score=54.85 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=45.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHh--CCCCCCCCcHHHHHHHHHHH
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGL--GVSASGLSEFESLMKQIQEY 282 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~l~~~ 282 (832)
+.+.+|+|.|.+|+||||+|+.++. ..+.. .+.-++...-+. ..-.....+.. .-..+..-+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~--~~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVE--KVVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcC--cceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3678999999999999999999997 33333 122222111111 00001111111 11234456777788888888
Q ss_pred HcCCc
Q 003300 283 IMGKK 287 (832)
Q Consensus 283 l~~k~ 287 (832)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 310
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.83 E-value=0.11 Score=51.88 Aligned_cols=122 Identities=9% Similarity=0.095 Sum_probs=79.9
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
.+.|+|.... ++++.++..... .-+.+.|+|+.|+|||+-++.+++ ..+..+.+..+..++...+...+
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k----~g~l~~vyg~~g~gKt~a~~~y~~------s~p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASK----TGSLVVVYGYAGLGKTQAAKNYAP------SNPNALLIEADPSYTALVLILII 139 (297)
T ss_pred cccccccchh-HhHhhhhhhhhh----cCceEEEeccccchhHHHHHhhcc------cCccceeecCChhhHHHHHHHHH
Confidence 3457765533 334444433321 344888999999999999999997 34455566777788877777777
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCC
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNG 313 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 313 (832)
......... .........+...+++..-++++|+...-....++.+.......
T Consensus 140 ~~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 140 CAAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred HHHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhh
Confidence 766655432 23344455566666888889999999766556666666654443
No 311
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.83 E-value=0.071 Score=50.69 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
...+|.|+|.+|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999973
No 312
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.82 E-value=0.049 Score=52.79 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=45.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhh-ccCC---eeEEEEeCCCccHHHHHHHHHHHh----CCCCCCCCcHHHHHHHHH
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVK-RNFE---KVIWVCVSDTFEGIRVAKAIIEGL----GVSASGLSEFESLMKQIQ 280 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 280 (832)
||+|.|.+|+||||+|+.+... .. ..+. ....++...-......... -... .-..+...+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 6999999999999999999873 32 1222 2344433333322222211 1111 112234467787888887
Q ss_pred HHHcCCceEE
Q 003300 281 EYIMGKKFFL 290 (832)
Q Consensus 281 ~~l~~k~~Ll 290 (832)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666766544
No 313
>PRK14974 cell division protein FtsY; Provisional
Probab=95.81 E-value=0.082 Score=55.37 Aligned_cols=89 Identities=25% Similarity=0.224 Sum_probs=48.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc--cHHHHHHHHHHHhCCCCC---CCCcHHHH-HHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EGIRVAKAIIEGLGVSAS---GLSEFESL-MKQI 279 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l 279 (832)
...++.++|+.|+||||++..++.... ...+ .++.+.. +.+ .....++.....++.+.. ...+.... .+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998887776321 1223 3444442 232 233445566677765421 12222222 2222
Q ss_pred HHHHcCCceEEEEeCCCC
Q 003300 280 QEYIMGKKFFLVLDDVWD 297 (832)
Q Consensus 280 ~~~l~~k~~LlVlDdv~~ 297 (832)
...-....=++++|.+-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222222223888998844
No 314
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.80 E-value=0.054 Score=61.11 Aligned_cols=136 Identities=14% Similarity=0.201 Sum_probs=75.1
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
...++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.++.... ..-...+.|++..-.+ ..+-..+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHh
Confidence 45699999999998888876543 445688999999999999999997421 1112345566554332 1111122
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEeCCH
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTRDR 326 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 326 (832)
+......-.+... + ....+. ....=-|+||++..-.......+...+..+. ...|||.||...
T Consensus 259 fG~~~g~~~ga~~-~-~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFTGAIS-N-RSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccCCCcc-c-CCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 1111110000000 0 000011 1122347899997665555556666554321 245888888643
No 315
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.06 Score=62.67 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=74.0
Q ss_pred ceecchhhHHHHHHHHhccCCCCC--CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQ--QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
.++|-++.+..|-+.+.....+-. .....+.+.|+.|+|||.||++++. .+-+..+..+-|+.+. ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-h
Confidence 367888888888887775543222 2466778899999999999999987 3333334455544443 222 2
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHHcCCce-EEEEeCCCCCCcccchhhhhhhcCC
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYIMGKKF-FLVLDDVWDGDYKKWDPFFSCLKNG 313 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 313 (832)
.+-.+.+..-.. .....+|.+.++.++| +|.|||+...+......+...+..+
T Consensus 634 skligsp~gyvG--~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSPPGYVG--KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCCccccc--chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 233333321111 1123366677776776 6679999877766666566666543
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.79 E-value=0.074 Score=54.27 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=49.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccH--HHHHHHHHHHhCCCC---CCCCcH-HHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEG--IRVAKAIIEGLGVSA---SGLSEF-ESLMKQI 279 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~-~~~~~~l 279 (832)
..+++.++|.+|+||||++..++.. ....-..+.++++.. +.. ..-+....+..+.+. ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 5689999999999999999888763 333323566666543 222 233444455555331 111222 2223334
Q ss_pred HHHHcCCceEEEEeCCC
Q 003300 280 QEYIMGKKFFLVLDDVW 296 (832)
Q Consensus 280 ~~~l~~k~~LlVlDdv~ 296 (832)
.....+..=++++|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 44344445578888773
No 317
>PHA02244 ATPase-like protein
Probab=95.76 E-value=0.048 Score=56.97 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
-|.|+|..|+|||+||++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999997
No 318
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.76 E-value=0.064 Score=56.41 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=41.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhh----ccCCeeEEEEeCCCccHHHHHHHHHHHhCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFEGIRVAKAIIEGLGV 264 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 264 (832)
...++-|+|.+|+|||+++..++-..... ..-..++||+....++++.+. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 56788899999999999998777432211 111369999999988887654 55666654
No 319
>PRK10867 signal recognition particle protein; Provisional
Probab=95.74 E-value=0.059 Score=58.44 Aligned_cols=87 Identities=26% Similarity=0.326 Sum_probs=46.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhcc-CCeeEEEEeCCCccH--HHHHHHHHHHhCCCC---CCCCcHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSDTFEG--IRVAKAIIEGLGVSA---SGLSEFESLMKQI 279 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~~~~l 279 (832)
...+|.++|.+|+||||.+..++.. .... -..++.|++. .+.+ .+-+....+..+.+. ....+...+....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~--l~~~~G~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY--LKKKKKKKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH--HHHhcCCcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 4689999999999999988777763 2222 2234555443 2322 233444555555431 1123334444333
Q ss_pred HHHHcCCce-EEEEeCC
Q 003300 280 QEYIMGKKF-FLVLDDV 295 (832)
Q Consensus 280 ~~~l~~k~~-LlVlDdv 295 (832)
.+..+.+.| ++|+|-.
T Consensus 176 ~~~a~~~~~DvVIIDTa 192 (433)
T PRK10867 176 LEEAKENGYDVVIVDTA 192 (433)
T ss_pred HHHHHhcCCCEEEEeCC
Confidence 333333334 6666665
No 320
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.73 E-value=0.059 Score=51.14 Aligned_cols=121 Identities=15% Similarity=0.101 Sum_probs=60.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC--CccHHHHHHHHHHHhCCCC-CC-------CCcHHHHH
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEGIRVAKAIIEGLGVSA-SG-------LSEFESLM 276 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~-~~-------~~~~~~~~ 276 (832)
-.+++|+|..|.|||||.+.++.. .......+++.-.. ........+.+.-...... .. ....+...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence 358999999999999999999863 22233333332110 0111111111100000000 00 11122223
Q ss_pred HHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC-CCCCcEEEEEeCCHHHHH
Q 003300 277 KQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTRDRSVAL 330 (832)
Q Consensus 277 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~~~ 330 (832)
-.+.+.+-.++-++++|+.... +......+...+.. ...|.-||++|.+.....
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3455566667778999987331 22223333333332 123667889998877653
No 321
>PRK08233 hypothetical protein; Provisional
Probab=95.71 E-value=0.03 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999863
No 322
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.11 Score=49.74 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC-CCCCcEEEEEeCCHHHHHHhCCcC
Q 003300 273 ESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTRDRSVALQLGSID 336 (832)
Q Consensus 273 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~~~~~~~~~ 336 (832)
+.....+.+.+-=++-+.|||..++- +.+..+.+...+.. ..+|+-+++.|.++.++..+....
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 33344555555566779999998552 22333333333322 234777999999999988775543
No 323
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.032 Score=59.41 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=44.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
...++.++|.+|+||||++..++........+ .+..++... .......++..++.++.+.....+... +...++
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~----l~~~l~ 296 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKK----FKETLA 296 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHH----HHHHHH
Confidence 35689999999999999998888632222222 233443322 112233444455555554322222222 333332
Q ss_pred -CCceEEEEeCC
Q 003300 285 -GKKFFLVLDDV 295 (832)
Q Consensus 285 -~k~~LlVlDdv 295 (832)
...=+||+|-.
T Consensus 297 ~~~~D~VLIDTa 308 (432)
T PRK12724 297 RDGSELILIDTA 308 (432)
T ss_pred hCCCCEEEEeCC
Confidence 33345888844
No 324
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.69 E-value=0.068 Score=56.19 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=41.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhc----cCCeeEEEEeCCCccHHHHHHHHHHHhCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEGIRVAKAIIEGLGV 264 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 264 (832)
...++-|+|.+|+|||+++.+++....... .=..++||+....++.+.+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 567889999999999999988876422211 11279999998888877654 44555443
No 325
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.61 E-value=0.019 Score=52.40 Aligned_cols=36 Identities=39% Similarity=0.344 Sum_probs=27.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEE
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 244 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 244 (832)
..+|.+.|.+|+||||||+++.. +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 4544445566664
No 326
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.075 Score=55.77 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=55.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC-ccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
+.+++.++|..|+||||++..++.. ....-..+.+|++..- ....+-++...+.++.+.....+...+...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 5689999999999999999888763 2222235667765432 223445566666666654333455555554443321
Q ss_pred -CCceEEEEeCCCC
Q 003300 285 -GKKFFLVLDDVWD 297 (832)
Q Consensus 285 -~k~~LlVlDdv~~ 297 (832)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3456788888743
No 327
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.59 E-value=0.039 Score=58.15 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=34.2
Q ss_pred eecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 182 VCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 182 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
++|+...++++.+.+..-.. ...-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777776665432 3345899999999999999999863
No 328
>PTZ00494 tuzin-like protein; Provisional
Probab=95.56 E-value=0.59 Score=49.53 Aligned_cols=167 Identities=15% Similarity=0.160 Sum_probs=105.7
Q ss_pred cCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 178 DEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 178 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
....+|.|+.+-..+...|...+. ..++++.+.|.-|.||++|.+.....+. -..++|++... ++-++.
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrs 437 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRS 437 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHH
Confidence 456799999998888888877643 5789999999999999999988775322 24677877654 456788
Q ss_pred HHHHhCCCCCCC-Cc-HHHHHHHHHH---HHcCCceEEEEeCCCCCCc-ccchhhhhhhcCCCCCcEEEEEeCCHHHHHH
Q 003300 258 IIEGLGVSASGL-SE-FESLMKQIQE---YIMGKKFFLVLDDVWDGDY-KKWDPFFSCLKNGHHESKILITTRDRSVALQ 331 (832)
Q Consensus 258 i~~~l~~~~~~~-~~-~~~~~~~l~~---~l~~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~ 331 (832)
|.+.++.+..+. .| ++-+.+.... ...++.-+||+-==.-.+. ..+.+.. .+.....-++|++----+.+...
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchh
Confidence 899999875442 22 2333333322 2346666777643211110 1122211 22334456778776655444322
Q ss_pred h---CCcCeeeCCCCChHHHHHHHHHHh
Q 003300 332 L---GSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 332 ~---~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
. .....|.+..++.++|+++.++..
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhccc
Confidence 1 124578999999999999888743
No 329
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.56 E-value=0.14 Score=51.61 Aligned_cols=142 Identities=19% Similarity=0.226 Sum_probs=71.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhhc----------cCCeeEEEEeCCCcc-HHHHHHHHHHHhCCCC-----------
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVKR----------NFEKVIWVCVSDTFE-GIRVAKAIIEGLGVSA----------- 266 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~----------~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~----------- 266 (832)
+..|+|.+|+|||+||..++-...... .=..+++++...+.+ ...-+..+...++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 567899999999999988875311111 112466666555442 3444444555442110
Q ss_pred -CC----C---CcHHHHHHHHHHHH-cCCceEEEEeCCCC------CCcccchhhhhhhcC--CCCCcEEEEEeCCHHHH
Q 003300 267 -SG----L---SEFESLMKQIQEYI-MGKKFFLVLDDVWD------GDYKKWDPFFSCLKN--GHHESKILITTRDRSVA 329 (832)
Q Consensus 267 -~~----~---~~~~~~~~~l~~~l-~~k~~LlVlDdv~~------~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~~~ 329 (832)
.. . .......+.+.+.+ ..+.-+||+|-+-. .+......+...+.. ...|.-||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 00 0 01112233333333 35677999996521 122233334443322 12466788888754221
Q ss_pred H--------H------h-CCcCeeeCCCCChHHHHH
Q 003300 330 L--------Q------L-GSIDIIPVKELGEGECCL 350 (832)
Q Consensus 330 ~--------~------~-~~~~~~~l~~L~~~~~~~ 350 (832)
. . . +....+.+.+++++|+.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 0 0 112367777787777765
No 330
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.55 E-value=0.047 Score=57.31 Aligned_cols=104 Identities=23% Similarity=0.248 Sum_probs=57.2
Q ss_pred CeEEEEEEecCCCcHH-HHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKT-TLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 283 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 283 (832)
+.+++.++|+.||||| |||+..+.-.. ...=..+..|+... .....+-++.-++-++.+-.-..+..++...+.. +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-L 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-h
Confidence 4789999999999997 56666654221 12224566665432 3344555666667777765444454444444433 2
Q ss_pred cCCceEEEEeCCCCC--CcccchhhhhhhcC
Q 003300 284 MGKKFFLVLDDVWDG--DYKKWDPFFSCLKN 312 (832)
Q Consensus 284 ~~k~~LlVlDdv~~~--~~~~~~~l~~~l~~ 312 (832)
++. =+|.+|-+-.. +....+.+...+..
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 333 35566766432 22233444444443
No 331
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.55 E-value=0.15 Score=48.53 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=71.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeC-------------------CCc-----------------
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-------------------DTF----------------- 249 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~----------------- 249 (832)
.-.|++|+|++|+|||||.+.+-.- ...=...+||.-. |.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 4468999999999999999998753 2222345555321 111
Q ss_pred --------cHHHHHHHHHHHhCCCC-----C-CCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC-C
Q 003300 250 --------EGIRVAKAIIEGLGVSA-----S-GLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN-G 313 (832)
Q Consensus 250 --------~~~~~~~~i~~~l~~~~-----~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~ 313 (832)
..++....+++.++... + ...-.++-.-.|.+.|.-++=++.||..-+. +++....+...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 12233334444445431 1 1223344455678888888889999998432 33333333333322 2
Q ss_pred CCCcEEEEEeCCHHHHHHhC
Q 003300 314 HHESKILITTRDRSVALQLG 333 (832)
Q Consensus 314 ~~gs~iivTtr~~~~~~~~~ 333 (832)
..|--.|+.|..-..|..+.
T Consensus 184 ~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HcCCeEEEEechhHHHHHhh
Confidence 34555777777766666544
No 332
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.54 E-value=0.077 Score=51.86 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=37.7
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEE---------EeCCCccHHHH--HHHHHHHhCCC
Q 003300 204 QQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV---------CVSDTFEGIRV--AKAIIEGLGVS 265 (832)
Q Consensus 204 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv---------~~~~~~~~~~~--~~~i~~~l~~~ 265 (832)
.....+|.++||+|.||||..+.++.+. ...+....-| +..-+.++++. +++..++.+..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl--~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHL--HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHH--hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 3466788899999999999999888743 2223222222 22334555554 56677776543
No 333
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.52 E-value=0.1 Score=51.92 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=31.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
...++.|.|..|.||||+|.+++... .+.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34589999999999999986665532 1222 4567776333 445555555
No 334
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.51 E-value=0.057 Score=53.28 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=39.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhhc-cC-CeeEEEEeCCCccHHHHHHHHHHHhC-CCCCCCCcHHHHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVKR-NF-EKVIWVCVSDTFEGIRVAKAIIEGLG-VSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f-~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~ 284 (832)
+|+|.|.+|+||||+|+.+... ... .. ..+..++...-+.....+.... .+. ...+...+.+.+.+.+...-.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999999873 321 01 2355555544332222222211 111 112344566666666655554
No 335
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.50 E-value=0.13 Score=53.09 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=35.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEG 261 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 261 (832)
...++.|.|.+|+||||++.+++.... ..+=..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 445888999999999999998876422 22134688887655 344555555443
No 336
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.24 Score=54.94 Aligned_cols=50 Identities=26% Similarity=0.169 Sum_probs=33.3
Q ss_pred ceecchhhHHHHHHHHhccCC-------CCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 181 EVCGRVDEKNELLSKLLCESG-------EQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
++=|-++-++++.+...-+-. -.....+-|..+|++|.|||++|+++++.
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 344556555555544332211 01246788999999999999999999984
No 337
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.49 E-value=0.13 Score=51.73 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=34.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
.-.++.|.|.+|+|||++|.++... ....-..++||+... +++++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 5679999999999999999877652 112345788887654 44455554
No 338
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.46 E-value=0.13 Score=57.36 Aligned_cols=59 Identities=24% Similarity=0.248 Sum_probs=43.1
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEE
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 244 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 244 (832)
+++--...++++..||...-. .....+++.+.|++|.||||.++.++++ -.|+.+=|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 455556778888888876432 1234579999999999999999999973 2466666764
No 339
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.035 Score=49.87 Aligned_cols=44 Identities=32% Similarity=0.401 Sum_probs=32.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVS 265 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 265 (832)
+|.|.|.+|.||||+|+.++++.... .| +.-.++++|+++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999732211 12 2235788888887764
No 340
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.14 Score=55.98 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=87.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
...-|.++|++|.|||-||++|++.. +-. |+++... +++..- -..+...+.+.+++.=..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa--g~N-----FisVKGP----ELlNkY---------VGESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA--GAN-----FISVKGP----ELLNKY---------VGESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc--cCc-----eEeecCH----HHHHHH---------hhhHHHHHHHHHHHhhcC
Confidence 34568899999999999999999953 333 3443321 111110 011223333344444457
Q ss_pred CceEEEEeCCCCC-----Ccccc------hhhhhhhcC--CCCCcEEEEEeCCHHHHHHh----C-CcCeeeCCCCChHH
Q 003300 286 KKFFLVLDDVWDG-----DYKKW------DPFFSCLKN--GHHESKILITTRDRSVALQL----G-SIDIIPVKELGEGE 347 (832)
Q Consensus 286 k~~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~iivTtr~~~~~~~~----~-~~~~~~l~~L~~~~ 347 (832)
-+++|.||.++.- +...| .++..-+.. ...|.-||-.|..+++.... | -....-++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 8999999998441 11222 223333322 24566677777766554321 1 24577788888899
Q ss_pred HHHHHHHHhhccCCC-CCccchHHHHHHHHHHcCCCh
Q 003300 348 CCLLFKQIAFLRRSF-EDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 348 ~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 383 (832)
-..+++...-....+ ...-+++++++. .+|.|+-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 999998877532222 233445444432 3455653
No 341
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.37 E-value=0.078 Score=54.28 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=44.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccC--CeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEY 282 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 282 (832)
....+|+|.|..|+||||+|+.+.. ...... ..+..++...-....+.....-..-....++..+.+.+.+.+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 3578999999999999999987764 222111 135555544433222222211000001123456677777777666
Q ss_pred HcCCc
Q 003300 283 IMGKK 287 (832)
Q Consensus 283 l~~k~ 287 (832)
-.++.
T Consensus 138 k~g~~ 142 (290)
T TIGR00554 138 KSGKP 142 (290)
T ss_pred HCCCC
Confidence 65553
No 342
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.35 E-value=0.013 Score=52.52 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHHcC
Q 003300 210 ISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (832)
|+|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 343
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.068 Score=49.77 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=63.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc--cHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
.+++|+|..|.|||||++.++... ......+++.-.... ...... ..++.-.+ ....+...-.+.+.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEEee-CCHHHHHHHHHHHHHhc
Confidence 689999999999999999999742 234445554321111 111111 11111000 12223333345566666
Q ss_pred CceEEEEeCCCCC-CcccchhhhhhhcC-CCCCcEEEEEeCCHHHHHHh
Q 003300 286 KKFFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTRDRSVALQL 332 (832)
Q Consensus 286 k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~~~~~ 332 (832)
.+-++++|+.-.. +......+...+.. ...+.-+|++|.+.......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 7889999997431 22223333333332 11245689999887776553
No 344
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.32 E-value=0.17 Score=47.05 Aligned_cols=120 Identities=15% Similarity=0.068 Sum_probs=61.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC---CccHHHHHHHHH---HHhCCC----CCCC-Cc---
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD---TFEGIRVAKAII---EGLGVS----ASGL-SE--- 271 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~---~~l~~~----~~~~-~~--- 271 (832)
....|-|++-.|.||||.|...+- +...+=-.++.+.+-+ .......+.... .+.+.. ..+. .+
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 346788888899999999977665 2222222344343322 223333333320 001110 0011 11
Q ss_pred HHHHHHHHHHHHc-CCceEEEEeCCCC---CCcccchhhhhhhcCCCCCcEEEEEeCCHH
Q 003300 272 FESLMKQIQEYIM-GKKFFLVLDDVWD---GDYKKWDPFFSCLKNGHHESKILITTRDRS 327 (832)
Q Consensus 272 ~~~~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 327 (832)
.+...+...+.+. ++-=++|||.+-. ...-..+.+...+.....+..||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1122223334444 4445999999821 112234456666665666778999999863
No 345
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.0008 Score=65.32 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=61.4
Q ss_pred CCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccC--CCCCCCCCcc
Q 003300 481 KLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPV--GISKLTSLRT 558 (832)
Q Consensus 481 ~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~--~l~~L~~L~~ 558 (832)
.+.+.+.|+..+|.+..+. ...+|+.|++|.|+-|. +..+.. +..|++|++|+|..|.+ ..+.. -+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhh
Confidence 4667889999999998763 35689999999999987 444433 88999999999999843 33321 2578889999
Q ss_pred CCceeeCCcc
Q 003300 559 LDKFVVGGGI 568 (832)
Q Consensus 559 L~~~~~~~~~ 568 (832)
|. +..|..
T Consensus 93 LW--L~ENPC 100 (388)
T KOG2123|consen 93 LW--LDENPC 100 (388)
T ss_pred Hh--hccCCc
Confidence 88 445443
No 346
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.31 E-value=0.098 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+...+++|.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 347
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.30 E-value=0.11 Score=55.46 Aligned_cols=82 Identities=23% Similarity=0.315 Sum_probs=48.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++.... ..++. .-+..++.... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4578999999999999999988863 3333356888876543 22222 22344544321 1233444444332
Q ss_pred HHHcCCceEEEEeCC
Q 003300 281 EYIMGKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~~k~~LlVlDdv 295 (832)
+.+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567788877
No 348
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.29 E-value=0.016 Score=50.48 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=23.0
Q ss_pred EEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHH
Q 003300 210 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVA 255 (832)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 255 (832)
|.|+|.+|+|||++|+.++. .....|.. |.+..+..+.++.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R---Iq~tpdllPsDi~ 42 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR---IQFTPDLLPSDIL 42 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE---EE--TT--HHHHH
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE---EEecCCCCcccce
Confidence 67999999999999999998 56666643 3344444444443
No 349
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.26 E-value=0.05 Score=52.88 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=60.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCC---CcHHHHHHHHHHH-
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGL---SEFESLMKQIQEY- 282 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~- 282 (832)
.+++.|.|..|.||||+.+.++...-.. + .-++|++.. .. -.+...|...++...... .....-..++...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la-~--~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA-Q--IGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH-H--cCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999999887532111 1 112222211 00 122233333333321111 1111111112222
Q ss_pred -HcCCceEEEEeCCCCCC-ccc----chhhhhhhcCCCCCcEEEEEeCCHHHHHHhCC
Q 003300 283 -IMGKKFFLVLDDVWDGD-YKK----WDPFFSCLKNGHHESKILITTRDRSVALQLGS 334 (832)
Q Consensus 283 -l~~k~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~~ 334 (832)
+..++-|+++|+.-... ..+ ...+...+.. .|..+|++|.+.+++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 23567899999974321 111 1122223322 37789999999988876543
No 350
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.26 E-value=0.15 Score=59.21 Aligned_cols=177 Identities=16% Similarity=0.116 Sum_probs=88.3
Q ss_pred ceecchhhHHHHHHHHhccCCC------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGE------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRV 254 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 254 (832)
++.|.+...+++.+.+...... ...-.+-|.++|.+|.|||++|+.++.. ....| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 4667766655555443321100 0112345899999999999999999873 22222 2222221 1
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc----------ccchhhhhhh----cC--CCCCcE
Q 003300 255 AKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY----------KKWDPFFSCL----KN--GHHESK 318 (832)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------~~~~~l~~~l----~~--~~~gs~ 318 (832)
.. +. .+ .....+...+...-...+.+|++|+++.-.. .........+ .. ...+.-
T Consensus 222 ~~-~~--~g------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 VE-MF--VG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred HH-hh--hc------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 10 00 00 0112222233333345678999999854210 1122222211 11 123444
Q ss_pred EEEEeCCHHHHHH-h---C-CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC
Q 003300 319 ILITTRDRSVALQ-L---G-SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL 382 (832)
Q Consensus 319 iivTtr~~~~~~~-~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 382 (832)
||.||...+.... + + -...+.+...+.++-.+++..+...... ....+ ...+++.+.|+
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l-~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDID----AAIIARGTPGF 356 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCC-CCcCC----HHHHHhhCCCC
Confidence 5557776553322 1 1 2457888888888888888876643211 11122 23466666664
No 351
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.018 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.--|+|.|++|+||||+++.+++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456899999999999999999974
No 352
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.066 Score=51.06 Aligned_cols=123 Identities=19% Similarity=0.065 Sum_probs=61.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe---CCCc-cHHHHHHHHHHHhCCCC--CC----------C
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV---SDTF-EGIRVAKAIIEGLGVSA--SG----------L 269 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~-~~~~~~~~i~~~l~~~~--~~----------~ 269 (832)
.-.+++|+|..|.|||||++.++... ......+.+.- .... ......+.+.-....+. .. .
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 34589999999999999999998631 22334444321 1100 01111111100000000 00 1
Q ss_pred CcHHHHHHHHHHHHcCCceEEEEeCCCC-CCcccchhhhhhhcCC-CC-CcEEEEEeCCHHHHHH
Q 003300 270 SEFESLMKQIQEYIMGKKFFLVLDDVWD-GDYKKWDPFFSCLKNG-HH-ESKILITTRDRSVALQ 331 (832)
Q Consensus 270 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~~~~~ 331 (832)
...+...-.+.+.+..++-++++|+--. -+....+.+...+... .. |.-||++|.+......
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 1112223345566667788899998632 1223333444444331 22 5668888888766544
No 353
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.068 Score=57.25 Aligned_cols=52 Identities=27% Similarity=0.190 Sum_probs=38.9
Q ss_pred ceecch---hhHHHHHHHHhccCCCC---CCCeEEEEEEecCCCcHHHHHHHHHcChh
Q 003300 181 EVCGRV---DEKNELLSKLLCESGEQ---QQGLYVISLVGLGGIGKTTLAQLAYNNDE 232 (832)
Q Consensus 181 ~~vGr~---~~~~~l~~~L~~~~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 232 (832)
++-|-| .|+++|+++|.++.... ..-++-|.++|++|.|||-||++++.+..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 456665 47888899998765311 23357789999999999999999998543
No 354
>PTZ00035 Rad51 protein; Provisional
Probab=95.11 E-value=0.18 Score=53.20 Aligned_cols=58 Identities=24% Similarity=0.238 Sum_probs=39.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhh----hccCCeeEEEEeCCCccHHHHHHHHHHHhCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEV----KRNFEKVIWVCVSDTFEGIRVAKAIIEGLGV 264 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 264 (832)
...++.|+|.+|+|||+|+..++..... ...=..++||+....++.+. +.++++..+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 5678999999999999999888753221 11123578998877777766 3444555543
No 355
>PRK05439 pantothenate kinase; Provisional
Probab=95.10 E-value=0.12 Score=53.21 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=45.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhcc--CCeeEEEEeCCCccHHHHHH--HHHHHhCCCCCCCCcHHHHHHHHH
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSDTFEGIRVAK--AIIEGLGVSASGLSEFESLMKQIQ 280 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~l~ 280 (832)
...-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...=+-..+.+. .++..-+ .++.-|.+.+.+.+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg--~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG--FPESYDMRALLRFLS 159 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhhhccccCC--CcccccHHHHHHHHH
Confidence 4678999999999999999998876 23221 12344454443322222211 1111111 234456777777777
Q ss_pred HHHcCCc
Q 003300 281 EYIMGKK 287 (832)
Q Consensus 281 ~~l~~k~ 287 (832)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6666665
No 356
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.11 Score=54.27 Aligned_cols=94 Identities=23% Similarity=0.289 Sum_probs=59.4
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCC
Q 003300 189 KNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASG 268 (832)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 268 (832)
..++-..|-+.- -.-.++.|-|.+|||||||..+++. +....- .+++|+-.+.. .+ .+--+++++.+...
T Consensus 79 ~~EldRVLGGG~----V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~--~Q-iklRA~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGGL----VPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESL--QQ-IKLRADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCCc----ccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCH--HH-HHHHHHHhCCCccc
Confidence 445545554422 2457899999999999999999988 444444 78887654432 22 22235666654322
Q ss_pred -----CCcHHHHHHHHHHHHcCCceEEEEeCC
Q 003300 269 -----LSEFESLMKQIQEYIMGKKFFLVLDDV 295 (832)
Q Consensus 269 -----~~~~~~~~~~l~~~l~~k~~LlVlDdv 295 (832)
+.+.+.+.+.+.+ .++-++|+|-+
T Consensus 149 l~l~aEt~~e~I~~~l~~---~~p~lvVIDSI 177 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ---EKPDLVVIDSI 177 (456)
T ss_pred eEEehhcCHHHHHHHHHh---cCCCEEEEecc
Confidence 3455555555544 67889999998
No 357
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.098 Score=59.61 Aligned_cols=181 Identities=17% Similarity=0.126 Sum_probs=99.9
Q ss_pred Cceecchh---hHHHHHHHHhccCCCC---CCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVD---EKNELLSKLLCESGEQ---QQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~---~~~~l~~~L~~~~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.++.|-++ |+++++++|..+.... ..-++=+.++|++|.|||-||++++..+. +-|++++..-
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGSE---- 379 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGSE---- 379 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechHH----
Confidence 35778765 5666777776654321 33567789999999999999999998533 2344444211
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCCCCc---------------ccchhhhhhhcCCC--C
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWDGDY---------------KKWDPFFSCLKNGH--H 315 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~~--~ 315 (832)
..+.+... + ...+..+...- +..+.+|.+|+++.... ..+.++..-+.... .
T Consensus 380 ----FvE~~~g~--~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 380 ----FVEMFVGV--G----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHhccc--c----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 11111110 0 11122222222 35677888887743211 11222222222222 2
Q ss_pred CcEEEEEeCCHHHHHH--h--C-CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhH
Q 003300 316 ESKILITTRDRSVALQ--L--G-SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 316 gs~iivTtr~~~~~~~--~--~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
+.-++-+|+..++... + | -...+.++.-+.....++|..++-.... ..+..++.+ ++...-|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHH
Confidence 2223335555444322 1 2 2567888888889999999988754322 234455565 88888887743
No 358
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.09 E-value=0.089 Score=54.35 Aligned_cols=83 Identities=23% Similarity=0.233 Sum_probs=50.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
.-+++-|+|..|+||||||.++.. ..+..-..++||+....+++. .+++++.... .....++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 456899999999999999988886 333344579999988877664 3445554321 1223455555555
Q ss_pred HHHc-CCceEEEEeCC
Q 003300 281 EYIM-GKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv 295 (832)
+.++ +..-++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5555 33457788877
No 359
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.27 Score=55.59 Aligned_cols=133 Identities=15% Similarity=0.029 Sum_probs=75.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
...+.+.++|++|.|||.||+++++ ..+.+|-.+.+ . + ++... -......+.+.+...-+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~-----~-~-------l~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKG-----S-E-------LLSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeC-----H-H-------Hhccc-----cchHHHHHHHHHHHHHc
Confidence 3556899999999999999999998 23333322221 1 1 11100 01112222333334445
Q ss_pred CCceEEEEeCCCCC-----Cc------ccchhhhhhhcC--CCCCcEEEEEeCCHHHHHHh-----CCcCeeeCCCCChH
Q 003300 285 GKKFFLVLDDVWDG-----DY------KKWDPFFSCLKN--GHHESKILITTRDRSVALQL-----GSIDIIPVKELGEG 346 (832)
Q Consensus 285 ~k~~LlVlDdv~~~-----~~------~~~~~l~~~l~~--~~~gs~iivTtr~~~~~~~~-----~~~~~~~l~~L~~~ 346 (832)
..+..|.+|+++.- .. .....+...+.. ...+..||-+|..+...... .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78899999998441 10 122233333332 22333455566554433221 22558889999999
Q ss_pred HHHHHHHHHhh
Q 003300 347 ECCLLFKQIAF 357 (832)
Q Consensus 347 ~~~~lf~~~~~ 357 (832)
+..+.|..+.-
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 360
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.37 Score=51.21 Aligned_cols=155 Identities=13% Similarity=0.073 Sum_probs=81.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
.|--.++|++|.|||++..++++.. .|+ ++=+..+...+-.+ ++.++... ..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~yd-IydLeLt~v~~n~d-Lr~LL~~t----------------------~~ 286 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYD-IYDLELTEVKLDSD-LRHLLLAT----------------------PN 286 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCc-eEEeeeccccCcHH-HHHHHHhC----------------------CC
Confidence 4567799999999999999999831 233 22222222221111 22222221 34
Q ss_pred ceEEEEeCCCCC------Cc------------ccchhhhhhhcC---CCCCcEEEE-EeCCHHHHHH--h--C-CcCeee
Q 003300 287 KFFLVLDDVWDG------DY------------KKWDPFFSCLKN---GHHESKILI-TTRDRSVALQ--L--G-SIDIIP 339 (832)
Q Consensus 287 ~~LlVlDdv~~~------~~------------~~~~~l~~~l~~---~~~gs~iiv-Ttr~~~~~~~--~--~-~~~~~~ 339 (832)
+-+||+.|++-. .. -.+..+..++.. ...+-|||| ||...+-... + | ..-.+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 556666666321 00 112234444332 112346655 6654433221 1 1 244688
Q ss_pred CCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcCC
Q 003300 340 VKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSK 396 (832)
Q Consensus 340 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 396 (832)
+.--+.+....|+..+..... ...++.+|.+...|.-+.-..++..|-.+
T Consensus 367 mgyCtf~~fK~La~nYL~~~~-------~h~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE-------DHRLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC-------CcchhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 888899999999998874322 13455666666666655555555544433
No 361
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.08 E-value=0.2 Score=46.07 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
++.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 362
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.06 E-value=0.25 Score=47.25 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||.+.++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999974
No 363
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.05 E-value=1.2 Score=46.15 Aligned_cols=134 Identities=11% Similarity=0.099 Sum_probs=77.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcCh---h---hhc--cCCeeEEEEe-CCCccHHHHHHHHHHHhCCCCCCCCcHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNND---E---VKR--NFEKVIWVCV-SDTFEGIRVAKAIIEGLGVSASGLSEFESLM 276 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~---~---~~~--~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 276 (832)
-..+..++|..|.||+++|..+.+.. . ... +=+...+++. +.....+++. ++.+.+....
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 34677799999999999998887631 0 010 1012233221 1111221111 2222221110
Q ss_pred HHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCC-HHHHHH-hCCcCeeeCCCCChHHHHHHHHH
Q 003300 277 KQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRD-RSVALQ-LGSIDIIPVKELGEGECCLLFKQ 354 (832)
Q Consensus 277 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~ 354 (832)
+-.+++=++|+|++..-+......+...+......+.+|++|.+ ..+... ......+++.++++++....+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 00146778899998555544556677777776677777776654 344433 34477899999999998877765
Q ss_pred H
Q 003300 355 I 355 (832)
Q Consensus 355 ~ 355 (832)
.
T Consensus 161 ~ 161 (299)
T PRK07132 161 K 161 (299)
T ss_pred c
Confidence 3
No 364
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.05 E-value=0.052 Score=53.31 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=58.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC---CCCcHHHHHHHHHHH-
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS---GLSEFESLMKQIQEY- 282 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~- 282 (832)
.+++.|+|..|.||||+.+.+....... +-. .|+.+.. ... ..+.++...++.... .......-.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la-~~G--~~v~a~~-~~~-~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLA-HIG--SFVPADS-ATI-GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHH-hCC--CeeEcCC-cEE-eeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 4889999999999999999887421111 111 1111111 000 011122222222111 111122122222222
Q ss_pred -HcCCceEEEEeCCCCCC-cccc----hhhhhhhcCC-CCCcEEEEEeCCHHHHHHh
Q 003300 283 -IMGKKFFLVLDDVWDGD-YKKW----DPFFSCLKNG-HHESKILITTRDRSVALQL 332 (832)
Q Consensus 283 -l~~k~~LlVlDdv~~~~-~~~~----~~l~~~l~~~-~~gs~iivTtr~~~~~~~~ 332 (832)
+..++.|+++|+.-... ..+. ..+...+... ..+..+|++|.+.+.....
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 23678999999985432 1111 1122233222 2345799999998887654
No 365
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.04 E-value=0.17 Score=48.56 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 366
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.04 E-value=0.093 Score=56.18 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
-.+++|+|++|.||||||+.+..
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999875
No 367
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.02 E-value=0.18 Score=49.98 Aligned_cols=125 Identities=19% Similarity=0.277 Sum_probs=69.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChh-----hh---c---cC---CeeEEEEeCC----Cc--cH---------------
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDE-----VK---R---NF---EKVIWVCVSD----TF--EG--------------- 251 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~---~---~f---~~~~wv~~~~----~~--~~--------------- 251 (832)
-.+++|+|+.|.|||||.+.+..-.. +. . .+ ..+.||+-.. .+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36899999999999999999987211 00 0 01 2455654211 11 11
Q ss_pred -------HHHHHHHHHHhCCCC------CCCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC-CCCC
Q 003300 252 -------IRVAKAIIEGLGVSA------SGLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN-GHHE 316 (832)
Q Consensus 252 -------~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~g 316 (832)
++...+.++.++... ....-.+.-.-.|.+.|..++=|++||.--.. |...-..+...+.. ...|
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 234444555555431 11122333344567888889999999975221 11222223333332 1237
Q ss_pred cEEEEEeCCHHHHHH
Q 003300 317 SKILITTRDRSVALQ 331 (832)
Q Consensus 317 s~iivTtr~~~~~~~ 331 (832)
.-|+++|.+-.....
T Consensus 190 ~tIl~vtHDL~~v~~ 204 (254)
T COG1121 190 KTVLMVTHDLGLVMA 204 (254)
T ss_pred CEEEEEeCCcHHhHh
Confidence 789999998766554
No 368
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.00 E-value=0.021 Score=56.26 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+..+|+|.|.+|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 369
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.95 E-value=0.022 Score=58.11 Aligned_cols=96 Identities=27% Similarity=0.253 Sum_probs=49.8
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCC
Q 003300 190 NELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGL 269 (832)
Q Consensus 190 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 269 (832)
..+++.+... .+-+.++|..|+|||++++....... ...| .+.-++.+...+...++..+-..+.......
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~ 93 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRV 93 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCC
Confidence 4455555542 34678999999999999998876311 1111 2444566665555544332222221111000
Q ss_pred CcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccch
Q 003300 270 SEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWD 304 (832)
Q Consensus 270 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~ 304 (832)
..--.+|+.++.+||+.-...+.|.
T Consensus 94 ----------~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 94 ----------YGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp ----------EEEESSSEEEEEEETTT-S---TTS
T ss_pred ----------CCCCCCcEEEEEecccCCCCCCCCC
Confidence 0001368889999999655545443
No 370
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.94 E-value=0.019 Score=44.68 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
+++|.|..|+||||+|+.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 371
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.92 E-value=0.066 Score=56.90 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=47.7
Q ss_pred CceecchhhHHHHHHHHhcc--------CCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC---CeeEEEEeC-C
Q 003300 180 GEVCGRVDEKNELLSKLLCE--------SGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVS-D 247 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~-~ 247 (832)
..++|.++.++.+...+... ........+.|.++|++|+|||++|+.++.. ....| +..-|+..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45888888888876665531 0000113467899999999999999999973 33333 222222222 1
Q ss_pred CccHHHHHHHHHHH
Q 003300 248 TFEGIRVAKAIIEG 261 (832)
Q Consensus 248 ~~~~~~~~~~i~~~ 261 (832)
..+.+.+++.+.+.
T Consensus 90 G~dvE~i~r~l~e~ 103 (441)
T TIGR00390 90 GRDVESMVRDLTDA 103 (441)
T ss_pred cCCHHHHHHHHHHH
Confidence 22455555555443
No 372
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.91 E-value=0.12 Score=50.74 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=36.4
Q ss_pred HHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC-CCCCcEEEEEeCCHHHHHHhCCcCeeeCCCC
Q 003300 279 IQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTRDRSVALQLGSIDIIPVKEL 343 (832)
Q Consensus 279 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~~~~~~~~~~~~l~~L 343 (832)
+.+.+-.++-++++|+--.. +......+...+.. ...|.-||++|.+...... ...+.++.+
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 45555667789999987331 22333444444432 2236668999988765543 556666654
No 373
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.17 Score=48.88 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.-.+++|+|..|.|||||++.++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999986
No 374
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.91 E-value=0.023 Score=55.70 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+...+|+|+|.+|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 375
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.23 Score=48.88 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||++.++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 376
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.88 E-value=0.28 Score=48.77 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|.|..|.|||||++.++..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999874
No 377
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.87 E-value=0.19 Score=48.95 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=61.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcCh--h-hhcc--CC---------------eeEEEEeCCCccHHHHHHHHHHHhCCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNND--E-VKRN--FE---------------KVIWVCVSDTFEGIRVAKAIIEGLGVS 265 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~--~-~~~~--f~---------------~~~wv~~~~~~~~~~~~~~i~~~l~~~ 265 (832)
.-.+++|+|..|.|||||.+.++... . ..+. |+ .+.++.-....-......+++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~--- 101 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV--- 101 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc---
Confidence 34689999999999999999988741 0 0000 00 022221110000000111111111
Q ss_pred CCCCCcHHHHHHHHHHHHcCCceEEEEeCCCC-CCcccchhhhhhhcCC-CCCcEEEEEeCCHHHHHH
Q 003300 266 ASGLSEFESLMKQIQEYIMGKKFFLVLDDVWD-GDYKKWDPFFSCLKNG-HHESKILITTRDRSVALQ 331 (832)
Q Consensus 266 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~~~~~ 331 (832)
.......+...-.+.+.+-.++-++++|+.-. -+....+.+...+... ..|.-||++|.+......
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 01122233333445666667788999998732 1223333344444331 235668889988876653
No 378
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.86 E-value=0.16 Score=51.08 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=56.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhh--hccCCeeEEEEeCCCc-cHHHHHHHHHHHhCCC-------CCCCCcHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEV--KRNFEKVIWVCVSDTF-EGIRVAKAIIEGLGVS-------ASGLSEFESL 275 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~ 275 (832)
.-..++|.|-+|+|||+|+.++.++... +.+-+.++++-+++.. +..++...+...-... ..+.....+.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3457899999999999999998875321 1224678888887765 4556666665432211 1122211111
Q ss_pred -----HHHHHHHHc---CCceEEEEeCC
Q 003300 276 -----MKQIQEYIM---GKKFFLVLDDV 295 (832)
Q Consensus 276 -----~~~l~~~l~---~k~~LlVlDdv 295 (832)
.-.+.++++ ++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 223455553 78999999998
No 379
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.86 E-value=0.17 Score=52.76 Aligned_cols=49 Identities=22% Similarity=0.108 Sum_probs=34.3
Q ss_pred eeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 337 IIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 337 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
++++++++.+|+..++..+.-.+-- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999988743322 111333455667777779998643
No 380
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.86 E-value=0.24 Score=48.88 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||++.++..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3458999999999999999999874
No 381
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.85 E-value=0.38 Score=47.12 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=32.2
Q ss_pred HHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCCCCCcEEEEEeCCHHHHHH
Q 003300 278 QIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTRDRSVALQ 331 (832)
Q Consensus 278 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~ 331 (832)
.+.+.+-.++-++++|+.... +....+.+...+.....|.-||++|.+......
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 345555567788899987432 233334444444433346668888888776543
No 382
>PTZ00301 uridine kinase; Provisional
Probab=94.84 E-value=0.039 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998876
No 383
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.26 Score=45.76 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC-CCCCcEEEEEeCCHH
Q 003300 272 FESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTRDRS 327 (832)
Q Consensus 272 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~ 327 (832)
.++..-.+.+..-.++-|-|||..... +.+..+.+...+.. ...|..||.||..+.
T Consensus 134 GQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred hHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 344444566666788999999998442 22222333333333 456788999998653
No 384
>PRK05973 replicative DNA helicase; Provisional
Probab=94.81 E-value=0.18 Score=49.96 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=32.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
.-.++.|.|.+|+|||++|.+++... ...-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC--HHHHHHHH
Confidence 44689999999999999998887642 222345777766543 34444443
No 385
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.81 E-value=0.33 Score=48.40 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=68.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhc----------------cC-CeeEEEEeCC---------------------
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKR----------------NF-EKVIWVCVSD--------------------- 247 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------~f-~~~~wv~~~~--------------------- 247 (832)
.-.+++|+|+.|+|||||.+.++.-..... .+ ..+.+|+-+.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 457899999999999999999987211000 00 1233332110
Q ss_pred ---CccH--HHHHHHHHHHhCCCC------CCCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC--C
Q 003300 248 ---TFEG--IRVAKAIIEGLGVSA------SGLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN--G 313 (832)
Q Consensus 248 ---~~~~--~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~ 313 (832)
..+. .+.....++.++... ......+.....+.+.|..+.=++++|+--+. |...--.+...+.. .
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 0011 123444455554431 11222333344566777777888899975211 11111112222222 1
Q ss_pred CCCcEEEEEeCCHHHHHHhCC
Q 003300 314 HHESKILITTRDRSVALQLGS 334 (832)
Q Consensus 314 ~~gs~iivTtr~~~~~~~~~~ 334 (832)
..|.-||+++.+...+..++.
T Consensus 187 ~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 187 EKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred hcCCEEEEEecCHHHHHHhCC
Confidence 345669999999998877654
No 386
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.17 Score=54.68 Aligned_cols=88 Identities=23% Similarity=0.314 Sum_probs=46.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
...+++++|..|+||||++..++.........+.+.++.... .....+-+....+.++.+.....+..+....+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 457999999999999999987775211122223444444322 223333344555555655433333333332222 233
Q ss_pred CCceEEEEeCC
Q 003300 285 GKKFFLVLDDV 295 (832)
Q Consensus 285 ~k~~LlVlDdv 295 (832)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 32 34556654
No 387
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.79 E-value=0.037 Score=52.03 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
++.|.|.+|+||||+|..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 588999999999999998876
No 388
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.78 E-value=0.45 Score=49.86 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=24.7
Q ss_pred EEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC
Q 003300 210 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 247 (832)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 247 (832)
+.+.|++|.||||+++.+.........+ .+.+++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcccc
Confidence 5789999999999999998742212222 355555433
No 389
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.49 Score=51.93 Aligned_cols=178 Identities=15% Similarity=0.139 Sum_probs=95.7
Q ss_pred CceecchhhHHHHHHHHhccCCC------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGE------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.++=|.+..+.++.+++.....+ +-...+-|.++|++|.|||.||++++++ ..-.| +.++-.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch-----
Confidence 45778888888887776543211 1235577899999999999999999984 33222 222211
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc-cc----------chhhhhhhcC---C---CCC
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY-KK----------WDPFFSCLKN---G---HHE 316 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-~~----------~~~l~~~l~~---~---~~g 316 (832)
.|+.... ..+.+.+.+.+.+.-..-++++++|+++-..+ .+ ..++...+.. . +.+
T Consensus 258 ---eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 ---EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 1222221 22334444444455567899999999854211 11 2222222221 1 122
Q ss_pred cEEEEEe-CCHHHHHHh---CC-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC
Q 003300 317 SKILITT-RDRSVALQL---GS-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL 382 (832)
Q Consensus 317 s~iivTt-r~~~~~~~~---~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 382 (832)
.-||-+| |-..+...+ |. ...|.+.--++..-.+++...+-+-... ..-++ ++|++..-|+
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d~----~qlA~lTPGf 395 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFDF----KQLAKLTPGF 395 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcCH----HHHHhcCCCc
Confidence 2233334 433222222 22 5678888777777777776665433321 12223 5666666664
No 390
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.77 E-value=0.37 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||++.++..
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.77 E-value=0.19 Score=54.33 Aligned_cols=38 Identities=37% Similarity=0.342 Sum_probs=26.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 245 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 245 (832)
...+|.++|..|+||||++..++.. .+..-..+..|++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~--l~~~G~kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY--YQRKGFKPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCCEEEEcC
Confidence 4689999999999999999887763 2222224555544
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.75 E-value=0.18 Score=51.26 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=65.5
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCC-CCC
Q 003300 189 KNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGV-SAS 267 (832)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~ 267 (832)
.+.+...|... ....-++|+|..|.|||||.+.++.. . ......+++.- ......+-..++...... +..
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~--~-~~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARI--L-STGISQLGLRG-KKVGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCc--c-CCCCceEEECC-EEeecchhHHHHHHHhcccccc
Confidence 44455555432 24578999999999999999999973 2 22233444321 111100111222222211 100
Q ss_pred ------CCCcHHHHHHHHHHHHc-CCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHH
Q 003300 268 ------GLSEFESLMKQIQEYIM-GKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVAL 330 (832)
Q Consensus 268 ------~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 330 (832)
+..+-......+...+. ..+=++++|..- ..+.+..+...+. .|..||+||.+..+..
T Consensus 169 ~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00010001112333332 467899999983 3344555544442 4778999999866643
No 393
>PRK06547 hypothetical protein; Provisional
Probab=94.75 E-value=0.027 Score=52.99 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
....+|+|.|.+|+||||+|+.++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999863
No 394
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.25 Score=57.15 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
.++++++|..|+||||.+..++...........+..++... .....+.++...+.++.+.....+.+.+.+.+. .+++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcC
Confidence 47999999999999999988886422222223455655432 122344555566666655433334444444333 2333
Q ss_pred CceEEEEeCC
Q 003300 286 KKFFLVLDDV 295 (832)
Q Consensus 286 k~~LlVlDdv 295 (832)
+ =+|++|-.
T Consensus 264 ~-D~VLIDTA 272 (767)
T PRK14723 264 K-HLVLIDTV 272 (767)
T ss_pred C-CEEEEeCC
Confidence 3 25556655
No 395
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.72 E-value=0.04 Score=56.92 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=44.4
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..|+|.++.++++++.+.....+.....+++.++|+-|.||||||+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999887665566789999999999999999998876
No 396
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.72 E-value=0.28 Score=48.67 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
No 397
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.69 E-value=0.28 Score=49.49 Aligned_cols=127 Identities=18% Similarity=0.096 Sum_probs=65.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhh-hc--cCC--eeEEEEeC----CCccHHHHH--------------HHHHHHh
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEV-KR--NFE--KVIWVCVS----DTFEGIRVA--------------KAIIEGL 262 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~f~--~~~wv~~~----~~~~~~~~~--------------~~i~~~l 262 (832)
.-.+++|+|..|+|||||++.++..... .+ .++ .+.++.-. ...++.+.+ .++++.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 3468999999999999999999874211 11 111 22333211 111222222 2233333
Q ss_pred CCCC------CCCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCC--CCCcEEEEEeCCHHHHHHh
Q 003300 263 GVSA------SGLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTRDRSVALQL 332 (832)
Q Consensus 263 ~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~~~~~~ 332 (832)
+... ......+...-.+.+.+..++-++++|+.-.. +...-..+...+... ..|.-||++|.+......+
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3321 01112222233455666777889999987321 222223333333321 2356699999987766543
No 398
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.69 E-value=0.36 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999874
No 399
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.68 E-value=0.075 Score=55.20 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
...+.++|||.+|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
No 400
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.67 E-value=0.25 Score=50.01 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=64.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhh-hcc--CC---eeEEEEeCCCc------cHH-----------HHHHHHHHHh
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEV-KRN--FE---KVIWVCVSDTF------EGI-----------RVAKAIIEGL 262 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~------~~~-----------~~~~~i~~~l 262 (832)
.-.+++|+|..|.|||||++.++..... .+. ++ .+.++.-.... +.. +-...+++.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHc
Confidence 3468999999999999999999874211 110 11 13333211100 111 1122334444
Q ss_pred CCCC------CCCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCC--CCCcEEEEEeCCHHHHHHh
Q 003300 263 GVSA------SGLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTRDRSVALQL 332 (832)
Q Consensus 263 ~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~~~~~~ 332 (832)
+... ......+...-.+.+.+-.++-++++|+.-.. +...-..+...+..- ..|.-||++|.+.......
T Consensus 109 gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~ 187 (251)
T PRK09544 109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAK 187 (251)
T ss_pred CChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 4321 01112222233355556667789999987331 222233333333321 1255688888887765443
No 401
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.67 E-value=0.6 Score=42.65 Aligned_cols=127 Identities=20% Similarity=0.250 Sum_probs=75.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC-------------------hhhhccC--CeeEEE--Ee------------------
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN-------------------DEVKRNF--EKVIWV--CV------------------ 245 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~-------------------~~~~~~f--~~~~wv--~~------------------ 245 (832)
-..++|+|.+|.||+||..-.+.- +.-+..| ..+-|| ++
T Consensus 36 Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL 115 (228)
T COG4181 36 GETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL 115 (228)
T ss_pred CceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhh
Confidence 346999999999999998766541 1111112 112222 11
Q ss_pred CC--CccHHHHHHHHHHHhCCCC------CCCCcHHHHHHHHHHHHcCCceEEEEeCC----CCCCcccchhhhhhhcCC
Q 003300 246 SD--TFEGIRVAKAIIEGLGVSA------SGLSEFESLMKQIQEYIMGKKFFLVLDDV----WDGDYKKWDPFFSCLKNG 313 (832)
Q Consensus 246 ~~--~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~~~l~~~l~~~ 313 (832)
.. ..+.....+..+++++... ....-.++-.-.|.+.+...+-+++-|.- +....+...++...+. .
T Consensus 116 ~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-r 194 (228)
T COG4181 116 RGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-R 194 (228)
T ss_pred cCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-h
Confidence 11 2244555667777777642 12233445555677888888888888854 2233334444444333 3
Q ss_pred CCCcEEEEEeCCHHHHHHhCC
Q 003300 314 HHESKILITTRDRSVALQLGS 334 (832)
Q Consensus 314 ~~gs~iivTtr~~~~~~~~~~ 334 (832)
..|+-.|+.|.++.++..|..
T Consensus 195 e~G~TlVlVTHD~~LA~Rc~R 215 (228)
T COG4181 195 ERGTTLVLVTHDPQLAARCDR 215 (228)
T ss_pred hcCceEEEEeCCHHHHHhhhh
Confidence 467888999999999987654
No 402
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.66 E-value=0.063 Score=54.55 Aligned_cols=23 Identities=39% Similarity=0.290 Sum_probs=18.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
+.|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999873
No 403
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.63 E-value=0.3 Score=48.79 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=29.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 247 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 247 (832)
.-.++.|.|.+|+|||++|.++... ....-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 5678999999999999999887653 112345688887644
No 404
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.63 E-value=0.18 Score=54.80 Aligned_cols=89 Identities=24% Similarity=0.238 Sum_probs=55.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc-cHHHHHHHHHHHhCCC-------CCCCCcHHHH--
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EGIRVAKAIIEGLGVS-------ASGLSEFESL-- 275 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~-- 275 (832)
.-..++|.|-+|+|||||+.+++...... +=+.++++-+++.. .+.+++..+...-... ..+.....+.
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45679999999999999999887642211 11457777776554 4566666666542221 1222222222
Q ss_pred ---HHHHHHHH---cCCceEEEEeCC
Q 003300 276 ---MKQIQEYI---MGKKFFLVLDDV 295 (832)
Q Consensus 276 ---~~~l~~~l---~~k~~LlVlDdv 295 (832)
.-.+.+++ +++.+||++|++
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 22355666 679999999999
No 405
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.62 E-value=0.1 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|.+|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 406
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.61 E-value=0.28 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||++.++..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999874
No 407
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.61 E-value=0.039 Score=54.59 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|.|.|++|+||||+|+.++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999986
No 408
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.57 E-value=0.23 Score=54.06 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=55.2
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHHcChhhh-----ccCCeeEEEEeCCCccHHHHHHHHHHHhCC-C-------CCCCCc
Q 003300 206 GLYVISLVGLGGIGKTTLA-QLAYNNDEVK-----RNFEKVIWVCVSDTFEGIRVAKAIIEGLGV-S-------ASGLSE 271 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~-------~~~~~~ 271 (832)
.-..++|.|-.|+|||+|| ..+.++..+. +.-+.++++-+++..+.-.-+...+++-+. . ..+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4567899999999999997 6667753221 234578888888876543334445554442 1 111211
Q ss_pred HHH-----HHHHHHHHH--cCCceEEEEeCC
Q 003300 272 FES-----LMKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 272 ~~~-----~~~~l~~~l--~~k~~LlVlDdv 295 (832)
..+ ..-.+.+++ +++..|+|+||+
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 111 122344455 589999999999
No 409
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.56 E-value=0.11 Score=50.57 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=52.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc-cHHHHHHHHHHHhCC-------CCCCCCcHHHH----
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EGIRVAKAIIEGLGV-------SASGLSEFESL---- 275 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~---- 275 (832)
..++|.|.+|+|||+|+..+.++. .-+.++++-+++.. +..++.+.+...-.. ...+.....+.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 578999999999999999998742 23455888887654 456666666443111 11122211111
Q ss_pred -HHHHHHHH--cCCceEEEEeCC
Q 003300 276 -MKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 276 -~~~l~~~l--~~k~~LlVlDdv 295 (832)
.-.+.+++ +++..|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 11233444 599999999998
No 410
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.53 E-value=0.077 Score=52.23 Aligned_cols=60 Identities=32% Similarity=0.372 Sum_probs=36.1
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccH
Q 003300 188 EKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEG 251 (832)
Q Consensus 188 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 251 (832)
+-.++.+.+....+ +..+|+|.|.+|+|||||..++....+.+++--.++=|+-+.+++-
T Consensus 14 ~~~~ll~~l~~~~g----~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHTG----RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGTT-----SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhcC----CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 44566666655433 6789999999999999999888774333333234555555555543
No 411
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.53 E-value=0.053 Score=48.12 Aligned_cols=40 Identities=25% Similarity=0.106 Sum_probs=28.4
Q ss_pred hhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 187 DEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 187 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
++.+++-+.|...- ....+|.+.|.-|.||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555554321 13458999999999999999999974
No 412
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.51 E-value=0.36 Score=47.88 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999999863
No 413
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.51 E-value=0.077 Score=56.46 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=37.2
Q ss_pred CceecchhhHHHHHHHHhcc--------CCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 180 GEVCGRVDEKNELLSKLLCE--------SGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
..++|.++.++.+..++... ........+.+.++|+.|+|||++|+.++..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889998888888777541 0000112467899999999999999999873
No 414
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.51 E-value=0.25 Score=46.74 Aligned_cols=120 Identities=15% Similarity=0.031 Sum_probs=64.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC---ccHHHHHHHHH--H--HhCCCC---CCC--CcH-
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT---FEGIRVAKAII--E--GLGVSA---SGL--SEF- 272 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~--~--~l~~~~---~~~--~~~- 272 (832)
....|.|+|-.|-||||.|...+- +...+=-.+..|.+-+. ......+..+- . ..+... ... .+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 346899999999999999977765 33333234555544332 23333333210 0 001110 001 111
Q ss_pred --HHHHHHHHHHHc-CCceEEEEeCCCC---CCcccchhhhhhhcCCCCCcEEEEEeCCHH
Q 003300 273 --ESLMKQIQEYIM-GKKFFLVLDDVWD---GDYKKWDPFFSCLKNGHHESKILITTRDRS 327 (832)
Q Consensus 273 --~~~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 327 (832)
....+...+.+. ++-=++|||.+-. ...-..+.+...+.....+..||+|-|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112223334444 4455999999822 112235556666666666778999999763
No 415
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.50 E-value=0.17 Score=55.54 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=46.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMG 285 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (832)
.+|++++|..|+||||++..++.....+.....+..|+... .....+-+....+..+.+.....+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 46999999999999999988886322222222455665432 22334445555565555432222222222222 22333
Q ss_pred CceEEEEeCC
Q 003300 286 KKFFLVLDDV 295 (832)
Q Consensus 286 k~~LlVlDdv 295 (832)
+ ..+++|-.
T Consensus 335 ~-d~VLIDTa 343 (484)
T PRK06995 335 K-HIVLIDTI 343 (484)
T ss_pred C-CeEEeCCC
Confidence 3 46666765
No 416
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.49 E-value=0.35 Score=46.80 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=59.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEE---------------eCCCc---cHHHHHHHHHHHhCCCCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---------------VSDTF---EGIRVAKAIIEGLGVSAS 267 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------~~~~~---~~~~~~~~i~~~l~~~~~ 267 (832)
.-.+++|.|..|.|||||.+.++.-.. .......+++. +.+.. ....+...+.......
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-- 110 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-- 110 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--
Confidence 446899999999999999999987320 01222222221 11111 0011111111100000
Q ss_pred CCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC-CCCCcEEEEEeCCHH
Q 003300 268 GLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTRDRS 327 (832)
Q Consensus 268 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~ 327 (832)
.....+...-.+.+.+-.++-++++|+.-.. +....+.+...+.. ...|.-||++|.+..
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 1222233333455666677789999987331 22333444444433 223666888888764
No 417
>PRK04328 hypothetical protein; Provisional
Probab=94.49 E-value=0.23 Score=50.13 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=30.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 248 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 248 (832)
.-.++.|.|.+|.|||+||.++... ....-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 4678999999999999999887653 2223456888887653
No 418
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.49 E-value=0.18 Score=54.60 Aligned_cols=87 Identities=22% Similarity=0.188 Sum_probs=48.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCC------CCCCCCcHHH-----
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGV------SASGLSEFES----- 274 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~------~~~~~~~~~~----- 274 (832)
.-..++|+|..|+|||||++.+.... .....++++.-...-++..+....+..... ...+......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 44679999999999999999888632 222344444322333444443333332211 1112211111
Q ss_pred HHHHHHHHH--cCCceEEEEeCC
Q 003300 275 LMKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 275 ~~~~l~~~l--~~k~~LlVlDdv 295 (832)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122244555 489999999998
No 419
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.47 E-value=0.069 Score=50.83 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 420
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.47 E-value=0.41 Score=48.51 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||++.++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3458999999999999999999874
No 421
>PRK06762 hypothetical protein; Provisional
Probab=94.45 E-value=0.031 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|.|.|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.44 E-value=0.041 Score=64.68 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
+.+++.|+|+.|.||||+.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3478999999999999999988763
No 423
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.44 E-value=0.23 Score=53.48 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=53.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCcc-HHHHHHHHHHHhCCC-------CCCCCcHHHH--
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-GIRVAKAIIEGLGVS-------ASGLSEFESL-- 275 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~~-- 275 (832)
.-..++|+|..|+|||||++.++... ..+.++++-+++... +.++...++..-+.. ..+.......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 44679999999999999999998631 225566666666543 455666554442221 1222222221
Q ss_pred ---HHHHHHHH--cCCceEEEEeCC
Q 003300 276 ---MKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 276 ---~~~l~~~l--~~k~~LlVlDdv 295 (832)
.-.+.+++ +++++|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 22245555 589999999998
No 424
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.42 E-value=0.089 Score=55.81 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=49.2
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 258 (832)
.++|+++.+..+...+.... .+.+.|.+|+|||+||+.++. ... ...++|.+.......++....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~--~l~---~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALAR--ALG---LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHH--HhC---CCeEEEecCCCCCHHHhcCch
Confidence 48898888888877776543 488999999999999999997 232 345677777777777665443
No 425
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.41 E-value=0.33 Score=48.05 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 426
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.41 E-value=0.3 Score=56.72 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.-..|+|+|..|.|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999875
No 427
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.40 E-value=0.38 Score=48.77 Aligned_cols=89 Identities=12% Similarity=0.236 Sum_probs=49.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc-cHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc-
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM- 284 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 284 (832)
..+++++|.+|+||||++..+... ....=..+.+++..... ....-++...+.++.+.....+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 368999999999999999888763 22222346666654321 22222333444444443223344444444433212
Q ss_pred CCceEEEEeCCCC
Q 003300 285 GKKFFLVLDDVWD 297 (832)
Q Consensus 285 ~k~~LlVlDdv~~ 297 (832)
.+.=++++|..-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 2456888998744
No 428
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.027 Score=53.25 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
..+|+|-||-|+||||||+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999973
No 429
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.37 E-value=0.19 Score=54.25 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=49.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCC-------CCCCCcHHHH--
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVS-------ASGLSEFESL-- 275 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~-- 275 (832)
.-..++|+|..|+|||||++.+..... . +..+.+.+.. .-...++....+..-+.. ..+.....+.
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 346799999999999999999887422 2 2222233333 334455555444332221 1222222222
Q ss_pred ---HHHHHHHH--cCCceEEEEeCC
Q 003300 276 ---MKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 276 ---~~~l~~~l--~~k~~LlVlDdv 295 (832)
.-.+.+++ +++.+|+++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 22355565 589999999998
No 430
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.34 Score=48.68 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=33.5
Q ss_pred HHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCCCCCcEEEEEeCCHHHHHH
Q 003300 277 KQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTRDRSVALQ 331 (832)
Q Consensus 277 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~ 331 (832)
-.+.+.+-.++-++++|+.... +....+.+...+.....|.-||++|.+......
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 3455666678889999997432 223334444444432226668888888776643
No 431
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.34 E-value=0.23 Score=49.44 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999874
No 432
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.17 Score=47.46 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
+.|.+.|.+|+||||+|++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 35778999999999999999973
No 433
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.32 E-value=0.0062 Score=68.90 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=28.7
Q ss_pred CCccceeeecccccccCCCCC-CC-CCCCcCeEEEcCChhhHHhh
Q 003300 767 MPRLSSLEVRSCNKLKALPDY-LL-QTTTLQDLTIWKCPILENRY 809 (832)
Q Consensus 767 l~~L~~L~l~~c~~l~~lp~~-~~-~l~~L~~L~l~~c~~L~~~~ 809 (832)
+.+|+.|+++.|...+.---. .. .+..+..+++.+|+.+....
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 344899999998865542111 11 16778899999998877543
No 434
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.31 E-value=0.25 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||.+.++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 435
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.31 E-value=0.063 Score=53.60 Aligned_cols=62 Identities=27% Similarity=0.288 Sum_probs=42.1
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHH
Q 003300 190 NELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVA 255 (832)
Q Consensus 190 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 255 (832)
.+++..+.... ++..+|+|.|.+|+|||||...+......+++--.++=|+-|..++-=.++
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 45555555443 378899999999999999998888754444443456666666666544333
No 436
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.30 E-value=0.091 Score=49.71 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.|.|.|.+|+||||+|+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
No 437
>COG4240 Predicted kinase [General function prediction only]
Probab=94.30 E-value=0.21 Score=47.53 Aligned_cols=82 Identities=13% Similarity=0.134 Sum_probs=56.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccC-CeeEEEEeCCCccHHHHHHHHHHHhCC-----CCCCCCcHHHHHHH
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEGIRVAKAIIEGLGV-----SASGLSEFESLMKQ 278 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~ 278 (832)
++.-+++|.|.-|+||||++..+++. ..... ..+...++.+-+-...-...++++... ..++..|..-..+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~--L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRL--LAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHH--HHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 46789999999999999999999984 33333 467777766655444444455555321 23455677777788
Q ss_pred HHHHHcCCce
Q 003300 279 IQEYIMGKKF 288 (832)
Q Consensus 279 l~~~l~~k~~ 288 (832)
+....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 8888877644
No 438
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.29 E-value=0.23 Score=48.08 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=28.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccC--------CeeEEEEeCCCc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNF--------EKVIWVCVSDTF 249 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~ 249 (832)
.++.|.|.+|+|||+++.+++........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 378899999999999998887643322222 368888876654
No 439
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.28 E-value=0.53 Score=52.14 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=64.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEE-----------eCCCccHHHH------------------HH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-----------VSDTFEGIRV------------------AK 256 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-----------~~~~~~~~~~------------------~~ 256 (832)
.-.+++|+|..|.|||||++.++.... .....+++. .....++.+. ..
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~ 125 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIP 125 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHH
Confidence 345899999999999999999987421 112222221 1111122111 11
Q ss_pred HHHHHhCCCC------CCCCcHHHHHHHHHHHHcCCceEEEEeCCCC-CCcccchhhhhhhcC-CCCCcEEEEEeCCHHH
Q 003300 257 AIIEGLGVSA------SGLSEFESLMKQIQEYIMGKKFFLVLDDVWD-GDYKKWDPFFSCLKN-GHHESKILITTRDRSV 328 (832)
Q Consensus 257 ~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~ 328 (832)
.+++.++... ......+...-.+.+.+...+-++++|+.-. -+....+.+...+.. ...|.-||++|.+...
T Consensus 126 elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 126 EIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred HHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 2333333321 1112223333345566667788999998733 122222333333332 2246669999998776
Q ss_pred HHHh
Q 003300 329 ALQL 332 (832)
Q Consensus 329 ~~~~ 332 (832)
...+
T Consensus 206 i~~l 209 (549)
T PRK13545 206 VKSF 209 (549)
T ss_pred HHHh
Confidence 6543
No 440
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.28 E-value=0.26 Score=48.19 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||.+.++.-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 441
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.27 E-value=0.028 Score=48.31 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHHcC
Q 003300 210 ISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (832)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998874
No 442
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.27 E-value=0.41 Score=46.67 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998864
No 443
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.26 E-value=0.41 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|.|..|.|||||++.++.-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999864
No 444
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.25 E-value=0.38 Score=50.31 Aligned_cols=88 Identities=25% Similarity=0.244 Sum_probs=46.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH--HHHHHHHHHhCCCC---CCCCcH-HHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI--RVAKAIIEGLGVSA---SGLSEF-ESLMKQI 279 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~---~~~~~~-~~~~~~l 279 (832)
...+++++|.+|+||||++..++.. ....=..+..+.. +.+... +-+.......+.+. ....+. ....+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~--l~~~g~~V~Li~~-D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK--YKAQGKKVLLAAG-DTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCeEEEEec-CccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 5689999999999999999988873 3222123444443 223221 11222233333321 111122 2223344
Q ss_pred HHHHcCCceEEEEeCCC
Q 003300 280 QEYIMGKKFFLVLDDVW 296 (832)
Q Consensus 280 ~~~l~~k~~LlVlDdv~ 296 (832)
........=++|+|-.-
T Consensus 190 ~~~~~~~~D~ViIDTaG 206 (318)
T PRK10416 190 QAAKARGIDVLIIDTAG 206 (318)
T ss_pred HHHHhCCCCEEEEeCCC
Confidence 44444444578888773
No 445
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.24 E-value=0.12 Score=58.48 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=35.6
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..++|....++++++.+..-.. .-.-|.|+|..|+||+.+|+++..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHH
Confidence 4699999888888877654322 223488999999999999999875
No 446
>PRK06217 hypothetical protein; Validated
Probab=94.22 E-value=0.072 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999974
No 447
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.24 Score=48.78 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
+++|+|..|.|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999863
No 448
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.19 E-value=0.082 Score=54.81 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=33.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
.+++.+.|.|||||||+|.+.+- ........++-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47899999999999999988665 3333334577777666555554443
No 449
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.19 E-value=0.24 Score=54.00 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=56.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc-cHHHHHHHHHHHhCCC-------CCCCCcHHH---
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EGIRVAKAIIEGLGVS-------ASGLSEFES--- 274 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 274 (832)
.-..++|.|-+|+|||||+.+++..... .+-+.++++-+++.. .+.++...+...-... ..+.....+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 4467999999999999999888875332 245777887776654 4456666665432211 112222221
Q ss_pred --HHHHHHHHH---cCCceEEEEeCC
Q 003300 275 --LMKQIQEYI---MGKKFFLVLDDV 295 (832)
Q Consensus 275 --~~~~l~~~l---~~k~~LlVlDdv 295 (832)
..-.+.+++ +++++|+++|++
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 122355565 389999999999
No 450
>PRK03839 putative kinase; Provisional
Probab=94.18 E-value=0.035 Score=53.07 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|.|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999997
No 451
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.18 E-value=0.35 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
++++|+|..|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999998875
No 452
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.15 E-value=0.61 Score=47.46 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=47.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-------CCCcHHHHHH
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-------GLSEFESLMK 277 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~ 277 (832)
.+..++.|.|..|+|||||...+.+. ....+ .++.+. .+..+..+ ...+...+.+.. -..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~-~~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSV-PCAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCC-CEEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 37899999999999999999998873 33333 233332 22222222 223444443311 1123344445
Q ss_pred HHHHHHcCCceEEEEeCCC
Q 003300 278 QIQEYIMGKKFFLVLDDVW 296 (832)
Q Consensus 278 ~l~~~l~~k~~LlVlDdv~ 296 (832)
.+........=++|++++-
T Consensus 176 Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHhhcCCcEEEEECCC
Confidence 5555444445677899983
No 453
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.14 E-value=4.6 Score=44.56 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=37.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHh
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGL 262 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 262 (832)
.-.++.|.|.+|+|||++|..++.+...+.. ..++|++ -+.+.+++...++...
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g-~~v~~fS--lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREG-KPVLFFS--LEMSAEQLGERLLASK 246 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCC-CcEEEEE--CCCCHHHHHHHHHHHH
Confidence 3458889999999999999988864222222 3466654 4457777777776554
No 454
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.13 E-value=0.031 Score=29.75 Aligned_cols=16 Identities=44% Similarity=0.654 Sum_probs=7.0
Q ss_pred ceeEEEeCCcCccccc
Q 003300 484 HLRYLNLSELGIERLP 499 (832)
Q Consensus 484 ~L~~L~Ls~~~i~~lp 499 (832)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666555544
No 455
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.12 E-value=0.18 Score=51.12 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHHcC
Q 003300 210 ISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (832)
|.++|.+|+||||+|+.++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999863
No 456
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.081 Score=46.76 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=42.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
.+-|.|.|-+|+||||+|.+++.. . . .-|+++++-.....++..-=++. ....-|.+.+...|.-.+.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~--~--~---~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK--T--G---LEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH--h--C---CceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcC
Confidence 345889999999999999999952 1 1 34666665333222221111111 123456677777777777654
Q ss_pred ce
Q 003300 287 KF 288 (832)
Q Consensus 287 ~~ 288 (832)
-+
T Consensus 77 g~ 78 (176)
T KOG3347|consen 77 GN 78 (176)
T ss_pred Cc
Confidence 43
No 457
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.11 E-value=0.12 Score=51.45 Aligned_cols=48 Identities=31% Similarity=0.278 Sum_probs=31.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhcc-CCeeEEEEeCCCccHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 257 (832)
.-.++.|.|.+|+|||++|.++... -... =..++||+...+. +++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~~--~~l~~~ 66 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEPP--EELIEN 66 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS-H--HHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCCH--HHHHHH
Confidence 4568999999999999999876653 2222 3468888775543 444443
No 458
>PRK00625 shikimate kinase; Provisional
Probab=94.10 E-value=0.037 Score=52.16 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|.++|++|+||||+++.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 459
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.10 E-value=0.35 Score=53.32 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=47.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..... .++... ++.++.... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEESA--SQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccccH--HHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 4568999999999999999988874 22223467888765433 333222 445543211 1233444433332
Q ss_pred HHHcCCceEEEEeCC
Q 003300 281 EYIMGKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~~k~~LlVlDdv 295 (832)
+ .+.-++|+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 34557777776
No 460
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.07 E-value=0.23 Score=53.86 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=56.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc-cHHHHHHHHHHHhCCC-------CCCCCcHHHH--
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EGIRVAKAIIEGLGVS-------ASGLSEFESL-- 275 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~-- 275 (832)
.-..++|.|.+|+|||+|+.++..+.. +.+-+.++|+-+++.. ...++...+...-... ..+.....+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 446799999999999999999887532 2234678888887655 3456666655432111 1222222211
Q ss_pred ---HHHHHHHH---cCCceEEEEeCC
Q 003300 276 ---MKQIQEYI---MGKKFFLVLDDV 295 (832)
Q Consensus 276 ---~~~l~~~l---~~k~~LlVlDdv 295 (832)
.-.+.+++ +++++|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 22355565 468999999999
No 461
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.53 Score=45.92 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3468999999999999999998874
No 462
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.05 E-value=0.043 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..++|+|.|.+|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999985
No 463
>PRK04040 adenylate kinase; Provisional
Probab=94.04 E-value=0.044 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 464
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.04 E-value=0.54 Score=47.66 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||.+.++.-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999874
No 465
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=1.3 Score=42.87 Aligned_cols=155 Identities=15% Similarity=0.089 Sum_probs=83.7
Q ss_pred ceecc-hhhHHHHHHHHhccCCC-------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 181 EVCGR-VDEKNELLSKLLCESGE-------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 181 ~~vGr-~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
+++|+ +..+++|.+.+.-+..- .-.+.+-+.++|++|.|||-||++|++ +..+.|+.++..--
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVah-------ht~c~firvsgsel-- 217 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH-------HTDCTFIRVSGSEL-- 217 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHh-------hcceEEEEechHHH--
Confidence 35655 66777777665432210 134667788999999999999999996 23456666665321
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCCCC-----------cccchhhhh---hhcC--CCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWDGD-----------YKKWDPFFS---CLKN--GHH 315 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------~~~~~~l~~---~l~~--~~~ 315 (832)
++.-|-+ .......+.-.- ..-+.+|..|.+++.. .+.-..+.. .+.. ..+
T Consensus 218 -vqk~ige-----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 218 -VQKYIGE-----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred -HHHHhhh-----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 1111211 011122222111 2456778888775411 111111222 2221 235
Q ss_pred CcEEEEEeCCHHHHHHh-----CCcCeeeCCCCChHHHHHHHHHHh
Q 003300 316 ESKILITTRDRSVALQL-----GSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 316 gs~iivTtr~~~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
.-|||+.|..-++.... .....|+..+-+++.-.++++-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 66888888755443321 224567888877777677766543
No 466
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.02 E-value=0.077 Score=48.02 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=27.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 247 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 247 (832)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999842 234555555666554
No 467
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.00 E-value=0.5 Score=46.48 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||.+.++.-
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999974
No 468
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.96 E-value=0.21 Score=57.93 Aligned_cols=84 Identities=23% Similarity=0.183 Sum_probs=57.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
.-+++-|+|..|+||||||.+++.. ....=..++|++....++.. .+++++.... .....++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 5678889999999999999876653 22233568999887777743 5666766421 2234455556666
Q ss_pred HHHc-CCceEEEEeCCC
Q 003300 281 EYIM-GKKFFLVLDDVW 296 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv~ 296 (832)
..++ ++.-+||+|-+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 6554 456689999873
No 469
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.94 E-value=0.64 Score=48.57 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 470
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.94 E-value=0.47 Score=52.33 Aligned_cols=53 Identities=28% Similarity=0.186 Sum_probs=35.2
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC
Q 003300 189 KNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 247 (832)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 247 (832)
+..+-+.|.+.- ..-.++.|.|.+|+|||||+.+++.. ....-..++|++...
T Consensus 80 i~~LD~vLgGGi----~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGGI----VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCCc----cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 444444454322 25678999999999999999988764 222223588887654
No 471
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.92 E-value=0.29 Score=49.76 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=30.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 247 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 247 (832)
.-.++.|.|.+|+|||++|.+++.. ....=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 4578999999999999999887653 222234688888764
No 472
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.90 E-value=0.68 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||++.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999863
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.86 E-value=0.44 Score=53.40 Aligned_cols=66 Identities=20% Similarity=0.098 Sum_probs=41.3
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhC
Q 003300 189 KNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLG 263 (832)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 263 (832)
+..+-+.|.+.- ..-.++.|.|.+|+|||||+.+++.. ...+=..+++++... +..++...+ +.++
T Consensus 249 i~~lD~~lgGG~----~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg 314 (484)
T TIGR02655 249 VVRLDEMCGGGF----FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA-YSWG 314 (484)
T ss_pred hHhHHHHhcCCc----cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH-HHcC
Confidence 344545554422 35678999999999999999888773 323335677776544 344444443 4444
No 474
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.86 E-value=0.45 Score=49.34 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.++++.|..|.|||||.+.+..-
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999874
No 475
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.85 E-value=0.57 Score=46.76 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||.+.++..
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 476
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.85 E-value=0.35 Score=47.54 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|.|..|.|||||.+.++..
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 477
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.82 E-value=0.1 Score=59.64 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=55.4
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.++.++.+...+... +.+.++|.+|+||||+|+.++.. -....++..+|.+- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 46899988888888776542 36889999999999999999874 22334577888654 4446677777777
Q ss_pred HHhCC
Q 003300 260 EGLGV 264 (832)
Q Consensus 260 ~~l~~ 264 (832)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 76654
No 478
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.81 E-value=0.053 Score=48.98 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999988876
No 479
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.80 E-value=0.18 Score=58.90 Aligned_cols=131 Identities=17% Similarity=0.124 Sum_probs=70.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
+.++|....+.++.+....-.. ...-|.|+|..|+||+++|+.+.+.... .-...+.|+++.-.. +.+...++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~~-~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYPD-EALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCCh-HHHHHHhc
Confidence 4588999888888877765432 2334789999999999999999874211 112334455544322 22222232
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEeCC
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTRD 325 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 325 (832)
........... ...+-....=.|+||++..-.......+...+..+. ...|||.||..
T Consensus 398 g~~~~~~~~~~--------~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSENGR--------LSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccCCC--------CCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 21110000000 000001123358999996655555555666554321 13467777664
No 480
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.80 E-value=0.37 Score=52.17 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=52.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCcc-HHHHHHHHHHHhCCC-------CCCCCcHHH---
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-GIRVAKAIIEGLGVS-------ASGLSEFES--- 274 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~--- 274 (832)
....++|+|..|+|||||++.+++... -+.++++-++.... +.++....+.+-+.. ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456789999999999999999997421 24555566665543 445554444432221 112222221
Q ss_pred --HHHHHHHHH--cCCceEEEEeCC
Q 003300 275 --LMKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 275 --~~~~l~~~l--~~k~~LlVlDdv 295 (832)
..-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 122345555 589999999999
No 481
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.79 E-value=0.11 Score=50.06 Aligned_cols=50 Identities=34% Similarity=0.431 Sum_probs=32.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSA 266 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 266 (832)
.|+|.|-||+||||+|...+.....++.| .++=|++..+++. .+++|...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh-------HHhcCCCC
Confidence 58999999999999998855422222223 3555666666554 35566654
No 482
>PRK15453 phosphoribulokinase; Provisional
Probab=93.78 E-value=0.28 Score=49.38 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=44.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC--CccHHHHHHHHH--HHhC--CCC--CCCCcHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEGIRVAKAII--EGLG--VSA--SGLSEFESLMK 277 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~--~~l~--~~~--~~~~~~~~~~~ 277 (832)
...+|+|.|-+|+||||+|+.+.. ..+..-...+.++... .++....-..+. +.-+ ... ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 567999999999999999998885 2221111244444322 223222222221 1112 122 45667787887
Q ss_pred HHHHHHcC
Q 003300 278 QIQEYIMG 285 (832)
Q Consensus 278 ~l~~~l~~ 285 (832)
.++.+.++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77776653
No 483
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.77 E-value=0.089 Score=54.68 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=67.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhc--cCC---eeEEE---------Ee--CCCccHHHHHHHHH----------
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKR--NFE---KVIWV---------CV--SDTFEGIRVAKAII---------- 259 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~---~~~wv---------~~--~~~~~~~~~~~~i~---------- 259 (832)
...+++|+|.+|+||||+.+++........ .|. ..+-| +- ...++...++.++.
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Av 487 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAV 487 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHH
Confidence 345889999999999999999886422111 110 11111 11 11122223333333
Q ss_pred ---HHhCCCC--------CCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhh-----hhhcCC--CCCcEEEE
Q 003300 260 ---EGLGVSA--------SGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFF-----SCLKNG--HHESKILI 321 (832)
Q Consensus 260 ---~~l~~~~--------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~-----~~l~~~--~~gs~iiv 321 (832)
+..+... .+..+.+.-..+|.+.+.++.-+++.|.... .+|.+. ..+..- ..|+-+++
T Consensus 488 eILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~A----hLD~~TA~rVArkiselaRe~giTliv 563 (593)
T COG2401 488 EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAA----HLDELTAVRVARKISELAREAGITLIV 563 (593)
T ss_pred HHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhh----hcCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 3333221 1223334445678888888888999998732 222221 112111 24666777
Q ss_pred EeCCHHHHHHhCCcC
Q 003300 322 TTRDRSVALQLGSID 336 (832)
Q Consensus 322 Ttr~~~~~~~~~~~~ 336 (832)
.|+.+++...+..+.
T Consensus 564 vThrpEv~~AL~PD~ 578 (593)
T COG2401 564 VTHRPEVGNALRPDT 578 (593)
T ss_pred EecCHHHHhccCCce
Confidence 777788877665544
No 484
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=8.3 Score=38.76 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=58.9
Q ss_pred ceecchhhHHHHHHHHhccCC------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESG------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRV 254 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 254 (832)
++-|-+...+.+.+...-+-. +.+..-+-|.++|++|.||+.||++|+.... .-|.+++..- +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSSD----L 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSSD----L 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehHH----H
Confidence 467777777777765532211 1133467899999999999999999998422 3344444321 2
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCC
Q 003300 255 AKAIIEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWD 297 (832)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 297 (832)
... .-+ +-+.++..+.+.- ..|+.+|.+|.++.
T Consensus 203 vSK----WmG------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 203 VSK----WMG------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHH----Hhc------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 211 111 1244555555544 37889999999854
No 485
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.77 E-value=0.36 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-..++|+|..|.|||||++.+...
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999763
No 486
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.76 E-value=0.041 Score=52.37 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|+|.|.+|+||||+|+.++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 487
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.72 E-value=0.05 Score=51.99 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.++.|+|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 488
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.72 E-value=0.61 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||.+.+..-
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999863
No 489
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.71 E-value=0.15 Score=57.19 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=37.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.+++|....++++.+.+..-.. ...-|.|.|..|+||+.+|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 3599999999888887754332 3356889999999999999999964
No 490
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.81 Score=46.25 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||.+.++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999863
No 491
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.68 E-value=0.092 Score=53.64 Aligned_cols=42 Identities=29% Similarity=0.312 Sum_probs=34.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 248 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 248 (832)
..-+++.|+|.+|+|||++|.++.. ........++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 3678999999999999999988887 45556788999987654
No 492
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.68 E-value=0.1 Score=54.24 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=30.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHH
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVA 255 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 255 (832)
+++.+.|-|||||||+|.+.+-. ....=..++-++.....+..+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARRGKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhCCCCeeEeecCCCccHHHHh
Confidence 57899999999999999777653 22222346666666555554444
No 493
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.67 E-value=0.042 Score=53.49 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|+|.|.+|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 494
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.65 E-value=0.05 Score=64.14 Aligned_cols=179 Identities=18% Similarity=0.155 Sum_probs=80.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC---CCCcHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS---GLSEFESLMKQIQEY 282 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 282 (832)
..+++.|+|+.+.||||+.+.+.-..-.. ..-++|++.... .-.++..|+..++.... ...+...-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~ma---q~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMA---KSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHH---HhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 45789999999999999998886421110 111122222100 00111111111111100 011111111222222
Q ss_pred Hc--CCceEEEEeCCCCC-Ccccchhhhhh-hcC-CCCCcEEEEEeCCHHHHHHhCCcCeeeCCCCC-hHHHHHHHHHHh
Q 003300 283 IM--GKKFFLVLDDVWDG-DYKKWDPFFSC-LKN-GHHESKILITTRDRSVALQLGSIDIIPVKELG-EGECCLLFKQIA 356 (832)
Q Consensus 283 l~--~k~~LlVlDdv~~~-~~~~~~~l~~~-l~~-~~~gs~iivTtr~~~~~~~~~~~~~~~l~~L~-~~~~~~lf~~~~ 356 (832)
+. ..+-|+++|..-.. ++..-..+... +.. ...|+.+|+||.+..+.........+....+. +++.... .+-
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~--~Yk 479 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEFDEETLRP--TYR 479 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCcE--EEE
Confidence 22 47789999998542 22222223221 111 12478899999998877654332211110110 0111000 011
Q ss_pred hccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcCC
Q 003300 357 FLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSK 396 (832)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 396 (832)
+..+. .-...|-+|++.+ |+|-.+.--|.-+...
T Consensus 480 l~~G~-----~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 480 LLIGI-----PGKSNAFEIAKRL-GLPENIIEEAKKLIGE 513 (782)
T ss_pred EeeCC-----CCCcHHHHHHHHh-CcCHHHHHHHHHHHhh
Confidence 11111 1123466777765 7888877777766544
No 495
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.64 E-value=0.38 Score=52.01 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=53.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc-cHHHHHHHHHHHhCCC-------CCCCCcHHHH--
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EGIRVAKAIIEGLGVS-------ASGLSEFESL-- 275 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~-- 275 (832)
.-..++|.|..|+|||||.+.+++.. .-+.++++-+++.. .+.++....+..-+.. ..+.......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 45689999999999999999999742 22567777776654 3444444433321111 1222222211
Q ss_pred ---HHHHHHHH--cCCceEEEEeCC
Q 003300 276 ---MKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 276 ---~~~l~~~l--~~k~~LlVlDdv 295 (832)
.-.+.+++ +++++|+++|++
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 12244555 589999999999
No 496
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.64 E-value=0.052 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
....|.|+|++|+||||+|+.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999997
No 497
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.63 E-value=0.28 Score=53.02 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=51.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC-ccHHHHHHHHHHHhCC-------CCCCCCcHHHH--
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEGIRVAKAIIEGLGV-------SASGLSEFESL-- 275 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~~-- 275 (832)
.-..++|+|..|+|||||++.+.+.. +.+..+++.++.. ..+.+.+.+....-.. ...+....+..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 44689999999999999999998742 2344555555543 3444555554322111 11122222222
Q ss_pred ---HHHHHHHH--cCCceEEEEeCC
Q 003300 276 ---MKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 276 ---~~~l~~~l--~~k~~LlVlDdv 295 (832)
.-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 22245555 589999999999
No 498
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.62 E-value=0.46 Score=49.48 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=50.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCC-------CCCCCcHHH---
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVS-------ASGLSEFES--- 274 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 274 (832)
....++|+|..|.|||||.+.+..... -+..+..-+.. .-+..++.......-+.. ..+.....+
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 345789999999999999999987422 12333343432 334555555554443221 122221111
Q ss_pred --HHHHHHHHH--cCCceEEEEeCC
Q 003300 275 --LMKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 275 --~~~~l~~~l--~~k~~LlVlDdv 295 (832)
..-.+.+++ +++.+|+++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 122344455 589999999998
No 499
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.61 E-value=0.18 Score=46.31 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|...|.+|.||||+|.+++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Confidence 567999999999999999999997
No 500
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.58 E-value=0.24 Score=49.48 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=60.4
Q ss_pred eecchhhHHHHHH----HHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 182 VCGRVDEKNELLS----KLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 182 ~vGr~~~~~~l~~----~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
++|..-..+.|+. .+.... ....=+++.+|..|+||.-+++.++++....+.- . .....
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~---p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--S------------~~V~~ 146 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN---PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--S------------PFVHH 146 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC---CCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--c------------hhHHH
Confidence 5554444444444 443332 3567799999999999999999998753221110 0 11111
Q ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhc
Q 003300 258 IIEGLGVSASGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLK 311 (832)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 311 (832)
......- +.....+.-..+|++++ .-+|-|+|+|+++.-...-.+.+...+.
T Consensus 147 fvat~hF--P~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 147 FVATLHF--PHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhhhccC--CChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1111111 11222222233333333 2478999999997766556666666554
Done!