Query 003300
Match_columns 832
No_of_seqs 546 out of 3944
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.7E-32 1.3E-36 308.1 19.6 213 183-411 131-356 (549)
2 1vt4_I APAF-1 related killer D 99.9 6.8E-27 2.3E-31 266.6 14.1 226 181-436 129-389 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 3.6E-25 1.2E-29 279.2 19.2 212 177-408 121-344 (1249)
4 3rgz_A Protein brassinosteroid 99.9 1.2E-25 4.2E-30 266.6 13.0 90 732-827 650-766 (768)
5 4ecn_A Leucine-rich repeat pro 99.9 3.1E-24 1.1E-28 252.3 16.7 321 441-805 487-840 (876)
6 4eco_A Uncharacterized protein 99.9 2.6E-24 8.9E-29 249.1 14.3 317 442-805 246-600 (636)
7 1z6t_A APAF-1, apoptotic prote 99.9 2.9E-23 1E-27 239.2 19.6 209 179-408 123-344 (591)
8 4fmz_A Internalin; leucine ric 99.9 1.2E-22 4E-27 218.0 19.2 298 441-804 40-345 (347)
9 3vq2_A TLR4, TOLL-like recepto 99.9 5.1E-22 1.8E-26 230.2 22.9 105 463-569 59-166 (606)
10 3rgz_A Protein brassinosteroid 99.9 6.7E-23 2.3E-27 243.1 15.0 66 733-804 627-692 (768)
11 2id5_A Lingo-1, leucine rich r 99.9 3.2E-22 1.1E-26 224.5 19.7 294 462-804 34-332 (477)
12 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-21 5.1E-26 216.0 22.6 302 441-804 38-351 (457)
13 3o6n_A APL1; leucine-rich repe 99.9 9.9E-22 3.4E-26 214.2 19.5 297 443-805 43-352 (390)
14 2z81_A CD282 antigen, TOLL-lik 99.9 5.7E-22 1.9E-26 226.9 18.5 339 440-804 45-509 (549)
15 4ecn_A Leucine-rich repeat pro 99.9 4.6E-22 1.6E-26 233.8 16.6 319 440-804 443-818 (876)
16 1o6v_A Internalin A; bacterial 99.9 1.5E-21 5.3E-26 217.8 20.0 61 734-804 327-387 (466)
17 3vq2_A TLR4, TOLL-like recepto 99.9 2E-22 6.8E-27 233.6 12.5 118 439-556 50-179 (606)
18 3oja_B Anopheles plasmodium-re 99.9 1.4E-21 4.8E-26 225.0 19.3 296 443-804 49-357 (597)
19 3t6q_A CD180 antigen; protein- 99.9 1.5E-21 5.3E-26 226.1 19.6 116 441-557 53-180 (606)
20 2z7x_B TOLL-like receptor 1, v 99.9 9.2E-22 3.1E-26 223.4 17.0 147 646-804 321-480 (520)
21 1ziw_A TOLL-like receptor 3; i 99.9 6.5E-22 2.2E-26 232.5 16.2 137 440-578 44-193 (680)
22 3t6q_A CD180 antigen; protein- 99.9 3.5E-21 1.2E-25 223.1 21.7 144 645-804 274-437 (606)
23 4eco_A Uncharacterized protein 99.9 5E-22 1.7E-26 230.0 13.9 316 440-804 201-578 (636)
24 4fmz_A Internalin; leucine ric 99.9 1.9E-21 6.4E-26 208.6 17.2 277 462-804 46-323 (347)
25 3v47_A TOLL-like receptor 5B a 99.9 1E-21 3.5E-26 219.1 14.3 331 445-804 30-407 (455)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.2E-21 1.8E-25 219.1 19.3 143 646-804 350-509 (562)
27 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-20 6.2E-25 224.6 24.4 80 463-542 76-160 (844)
28 4fcg_A Uncharacterized protein 99.9 3.8E-21 1.3E-25 203.4 16.0 228 463-802 84-311 (328)
29 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-20 4.5E-25 225.8 20.8 134 444-579 23-171 (844)
30 3o6n_A APL1; leucine-rich repe 99.8 3E-21 1E-25 210.5 13.4 280 462-804 47-330 (390)
31 2id5_A Lingo-1, leucine rich r 99.8 1.1E-20 3.6E-25 212.1 17.9 292 463-804 14-308 (477)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.4E-20 8.2E-25 213.6 21.1 136 650-804 332-485 (562)
33 2z63_A TOLL-like receptor 4, v 99.8 1.1E-20 3.6E-25 217.5 18.3 334 440-804 47-482 (570)
34 1o6v_A Internalin A; bacterial 99.8 2.1E-20 7.2E-25 208.7 18.2 300 443-804 44-365 (466)
35 3bz5_A Internalin-J, INLJ; leu 99.8 2.3E-20 7.7E-25 206.5 18.1 274 462-802 44-328 (457)
36 3oja_B Anopheles plasmodium-re 99.8 5.5E-21 1.9E-25 220.0 13.6 281 462-804 53-336 (597)
37 2z7x_B TOLL-like receptor 1, v 99.8 2.3E-20 8E-25 211.9 18.4 137 649-804 302-456 (520)
38 3v47_A TOLL-like receptor 5B a 99.8 1.6E-20 5.5E-25 209.5 14.4 307 439-785 48-412 (455)
39 2ft3_A Biglycan; proteoglycan, 99.8 5.6E-20 1.9E-24 195.5 15.7 69 734-803 260-331 (332)
40 2z63_A TOLL-like receptor 4, v 99.8 2.2E-20 7.4E-25 214.9 13.3 121 439-560 70-206 (570)
41 2z81_A CD282 antigen, TOLL-lik 99.8 6E-20 2.1E-24 210.1 16.2 181 462-664 28-211 (549)
42 1ziw_A TOLL-like receptor 3; i 99.8 1.8E-19 6.2E-24 211.7 20.6 122 438-559 66-200 (680)
43 1xku_A Decorin; proteoglycan, 99.8 1.5E-19 5.1E-24 192.1 17.6 290 463-802 34-329 (330)
44 2z80_A TOLL-like receptor 2, v 99.8 6.1E-20 2.1E-24 197.0 12.8 276 463-804 34-313 (353)
45 1xku_A Decorin; proteoglycan, 99.8 8E-19 2.7E-23 186.5 18.3 289 446-779 32-330 (330)
46 1ogq_A PGIP-2, polygalacturona 99.8 2.4E-20 8.3E-25 196.0 6.2 245 463-805 53-304 (313)
47 2ft3_A Biglycan; proteoglycan, 99.8 9.7E-19 3.3E-23 185.9 18.7 287 446-779 34-331 (332)
48 1jl5_A Outer protein YOPM; leu 99.8 1.5E-18 5.3E-23 191.6 20.8 285 445-804 91-408 (454)
49 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-19 4.3E-24 190.6 10.1 234 445-703 50-300 (313)
50 3g06_A SSPH2 (leucine-rich rep 99.8 2.5E-18 8.4E-23 195.7 20.1 255 464-806 44-298 (622)
51 4fcg_A Uncharacterized protein 99.8 1.2E-18 4.1E-23 184.2 15.1 214 481-807 79-292 (328)
52 4g8a_A TOLL-like receptor 4; l 99.8 1.8E-18 6.3E-23 201.7 14.8 122 446-569 53-186 (635)
53 3zyi_A Leucine-rich repeat-con 99.7 3.6E-17 1.2E-21 181.6 19.8 243 463-803 57-301 (452)
54 1jl5_A Outer protein YOPM; leu 99.7 4.5E-18 1.5E-22 187.9 11.4 180 462-683 13-206 (454)
55 2z66_A Variable lymphocyte rec 99.7 8.8E-18 3E-22 176.3 12.8 245 463-804 10-260 (306)
56 3zyj_A Leucine-rich repeat-con 99.7 5.5E-17 1.9E-21 179.5 19.9 244 463-804 46-291 (440)
57 4g8a_A TOLL-like receptor 4; l 99.7 1.5E-16 5E-21 185.6 21.2 105 463-570 55-162 (635)
58 2z80_A TOLL-like receptor 2, v 99.7 1.6E-17 5.4E-22 178.2 10.2 250 462-780 54-313 (353)
59 3g06_A SSPH2 (leucine-rich rep 99.7 2.3E-16 7.7E-21 179.6 19.3 255 445-784 40-300 (622)
60 1ozn_A Reticulon 4 receptor; N 99.7 5.7E-17 1.9E-21 168.2 11.8 199 462-683 34-236 (285)
61 1z7x_W Ribonuclease inhibitor; 99.7 7.8E-19 2.7E-23 196.2 -5.4 342 438-804 21-410 (461)
62 1wwl_A Monocyte differentiatio 99.7 1.5E-17 5E-22 174.9 2.8 58 736-804 251-308 (312)
63 3qfl_A MLA10; coiled-coil, (CC 99.7 1.6E-16 5.5E-21 136.5 7.9 80 9-89 2-83 (115)
64 1wwl_A Monocyte differentiatio 99.6 3.3E-17 1.1E-21 172.2 4.1 245 443-716 41-310 (312)
65 1ozn_A Reticulon 4 receptor; N 99.6 3.4E-16 1.2E-20 162.3 11.0 195 463-682 14-211 (285)
66 3zyj_A Leucine-rich repeat-con 99.6 6.8E-16 2.3E-20 170.7 13.9 195 463-683 67-266 (440)
67 3zyi_A Leucine-rich repeat-con 99.6 7.7E-16 2.6E-20 170.9 14.2 196 463-683 78-277 (452)
68 3o53_A Protein LRIM1, AGAP0063 99.6 7.7E-17 2.6E-21 169.8 5.8 259 464-807 14-277 (317)
69 2z66_A Variable lymphocyte rec 99.6 2E-16 6.9E-21 165.9 8.1 104 462-568 30-138 (306)
70 3oja_A Leucine-rich immune mol 99.6 3.6E-16 1.2E-20 174.4 8.8 87 472-567 19-110 (487)
71 1p9a_G Platelet glycoprotein I 99.6 2.2E-15 7.6E-20 155.9 12.6 192 443-683 8-206 (290)
72 2o6q_A Variable lymphocyte rec 99.6 3.7E-15 1.3E-19 153.0 13.5 101 463-568 19-121 (270)
73 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-16 5.3E-21 167.4 2.6 243 462-786 36-280 (317)
74 1z7x_W Ribonuclease inhibitor; 99.6 4.9E-18 1.7E-22 189.7 -9.7 331 445-804 3-382 (461)
75 2z62_A TOLL-like receptor 4, v 99.6 2.2E-15 7.5E-20 155.4 9.7 98 463-560 31-130 (276)
76 2z62_A TOLL-like receptor 4, v 99.6 5.3E-15 1.8E-19 152.5 12.4 149 466-624 13-162 (276)
77 2xwt_C Thyrotropin receptor; s 99.6 3.7E-15 1.2E-19 150.0 9.4 97 466-568 17-117 (239)
78 4ay9_X Follicle-stimulating ho 99.6 8.5E-15 2.9E-19 156.4 12.3 104 463-570 12-118 (350)
79 3ogk_B Coronatine-insensitive 99.6 4.1E-16 1.4E-20 180.0 2.3 119 441-560 160-299 (592)
80 1p9a_G Platelet glycoprotein I 99.6 3E-14 1E-18 147.4 15.9 201 479-804 6-207 (290)
81 1h6u_A Internalin H; cell adhe 99.6 1.6E-14 5.5E-19 151.1 13.1 185 463-683 44-228 (308)
82 3oja_A Leucine-rich immune mol 99.6 7.6E-16 2.6E-20 171.8 3.1 188 462-683 36-225 (487)
83 2ast_B S-phase kinase-associat 99.5 3.3E-16 1.1E-20 166.8 -0.6 78 463-540 73-152 (336)
84 3rfs_A Internalin B, repeat mo 99.5 3.5E-14 1.2E-18 145.8 11.9 173 463-684 44-217 (272)
85 2o6q_A Variable lymphocyte rec 99.5 8.4E-14 2.9E-18 142.8 13.2 192 446-684 17-217 (270)
86 2qen_A Walker-type ATPase; unk 99.5 2.7E-13 9.1E-18 145.1 17.2 197 178-394 10-250 (350)
87 2xwt_C Thyrotropin receptor; s 99.5 1.3E-14 4.3E-19 146.1 6.3 191 462-704 33-236 (239)
88 3m19_A Variable lymphocyte rec 99.5 8.8E-14 3E-18 140.9 12.5 172 463-683 17-190 (251)
89 3rfs_A Internalin B, repeat mo 99.5 3.1E-14 1.1E-18 146.1 8.6 193 442-688 38-238 (272)
90 3ogk_B Coronatine-insensitive 99.5 6E-15 2E-19 170.3 3.6 148 462-619 166-326 (592)
91 1h6u_A Internalin H; cell adhe 99.5 1.3E-13 4.4E-18 144.2 12.3 195 479-716 37-231 (308)
92 1w5s_A Origin recognition comp 99.5 7.1E-13 2.4E-17 145.3 18.6 210 179-390 21-266 (412)
93 4glp_A Monocyte differentiatio 99.5 5.8E-14 2E-18 147.2 8.8 203 462-715 93-307 (310)
94 2fna_A Conserved hypothetical 99.5 1E-12 3.6E-17 140.9 17.8 203 178-402 11-262 (357)
95 4ay9_X Follicle-stimulating ho 99.4 1.1E-12 3.8E-17 139.9 15.7 81 476-560 3-85 (350)
96 4glp_A Monocyte differentiatio 99.4 1.1E-13 3.8E-18 145.0 7.8 193 443-684 89-306 (310)
97 3goz_A Leucine-rich repeat-con 99.4 1.2E-14 4.1E-19 156.1 -1.2 102 465-568 3-121 (362)
98 2ast_B S-phase kinase-associat 99.4 2.6E-14 8.8E-19 152.1 0.9 122 439-560 62-201 (336)
99 2ca6_A RAN GTPase-activating p 99.4 9.8E-15 3.3E-19 158.5 -3.2 233 439-683 26-314 (386)
100 2ca6_A RAN GTPase-activating p 99.4 2.1E-14 7E-19 155.9 -2.2 80 463-542 35-134 (386)
101 3m19_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 132.2 11.3 152 483-683 14-166 (251)
102 3goz_A Leucine-rich repeat-con 99.4 4.6E-14 1.6E-18 151.5 -0.7 185 487-683 2-207 (362)
103 3cvr_A Invasion plasmid antige 99.4 1.2E-12 4.2E-17 146.9 10.6 179 465-685 64-243 (571)
104 2p1m_B Transport inhibitor res 99.4 4.2E-14 1.4E-18 163.2 -1.6 63 737-805 455-519 (594)
105 4ezg_A Putative uncharacterize 99.4 1.2E-12 4E-17 127.1 8.7 146 463-623 47-193 (197)
106 2p1m_B Transport inhibitor res 99.3 2.9E-14 1E-18 164.5 -3.5 63 735-804 429-493 (594)
107 1h6t_A Internalin B; cell adhe 99.3 5.7E-12 2E-16 130.4 12.2 163 463-683 49-211 (291)
108 1h6t_A Internalin B; cell adhe 99.3 7.7E-12 2.6E-16 129.4 13.0 163 442-623 43-212 (291)
109 2xot_A Amphoterin-induced prot 99.3 3.6E-12 1.2E-16 136.5 9.9 175 463-683 21-200 (361)
110 2qby_B CDC6 homolog 3, cell di 99.3 5.2E-11 1.8E-15 129.0 18.6 225 180-408 20-269 (384)
111 2o6s_A Variable lymphocyte rec 99.3 3E-12 1E-16 125.5 7.4 100 463-567 10-111 (208)
112 1m9s_A Internalin B; cell inva 99.3 4.2E-12 1.4E-16 144.3 9.6 165 462-684 45-209 (605)
113 1fnn_A CDC6P, cell division co 99.3 1.7E-10 5.7E-15 125.2 20.9 206 180-389 17-246 (389)
114 2v9t_B SLIT homolog 2 protein 99.3 8E-12 2.8E-16 123.3 9.3 103 463-570 14-118 (220)
115 2v1u_A Cell division control p 99.3 1.6E-10 5.6E-15 125.2 20.6 225 179-408 18-275 (387)
116 1njg_A DNA polymerase III subu 99.3 1.5E-10 5.1E-15 116.8 18.8 197 180-393 23-231 (250)
117 4ezg_A Putative uncharacterize 99.3 1.2E-11 4.1E-16 119.9 10.0 142 442-592 41-190 (197)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 1.6E-11 5.3E-16 121.3 10.8 150 464-624 15-166 (220)
119 1xeu_A Internalin C; cellular 99.2 4.2E-12 1.4E-16 129.1 6.4 95 464-567 23-117 (263)
120 2xot_A Amphoterin-induced prot 99.2 1.3E-11 4.4E-16 132.2 10.3 173 448-626 21-204 (361)
121 2qby_A CDC6 homolog 1, cell di 99.2 5E-11 1.7E-15 129.3 15.0 203 179-387 19-242 (386)
122 1m9s_A Internalin B; cell inva 99.2 1.1E-11 3.8E-16 140.8 10.1 165 441-624 39-210 (605)
123 2v9t_B SLIT homolog 2 protein 99.2 3.5E-11 1.2E-15 118.7 11.7 105 462-569 34-141 (220)
124 2v70_A SLIT-2, SLIT homolog 2 99.2 1.3E-11 4.6E-16 121.7 7.8 140 448-592 14-162 (220)
125 3e6j_A Variable lymphocyte rec 99.2 3.6E-11 1.2E-15 119.5 10.3 101 463-568 22-124 (229)
126 2chg_A Replication factor C sm 99.2 7.5E-10 2.6E-14 109.8 19.0 185 180-390 17-204 (226)
127 2wfh_A SLIT homolog 2 protein 99.2 5.3E-11 1.8E-15 114.6 10.2 103 463-569 13-115 (193)
128 1w8a_A SLIT protein; signaling 99.2 4.3E-11 1.5E-15 115.3 9.4 103 463-569 11-115 (192)
129 2je0_A Acidic leucine-rich nuc 99.2 9.3E-12 3.2E-16 114.7 4.3 106 462-570 19-127 (149)
130 3e6j_A Variable lymphocyte rec 99.2 7E-11 2.4E-15 117.4 10.9 105 462-569 42-148 (229)
131 2ell_A Acidic leucine-rich nuc 99.2 1.6E-11 5.3E-16 115.8 5.4 103 462-568 26-132 (168)
132 1xeu_A Internalin C; cellular 99.2 1.2E-10 4.2E-15 118.2 12.3 143 462-624 43-185 (263)
133 1w8a_A SLIT protein; signaling 99.2 8.5E-11 2.9E-15 113.2 10.3 120 448-569 11-139 (192)
134 3cvr_A Invasion plasmid antige 99.2 7.3E-11 2.5E-15 132.5 11.0 75 483-569 59-133 (571)
135 2wfh_A SLIT homolog 2 protein 99.1 1.5E-10 5.2E-15 111.4 10.5 118 448-568 13-138 (193)
136 1dce_A Protein (RAB geranylger 99.1 4E-11 1.4E-15 135.5 7.3 104 462-570 443-547 (567)
137 2o6s_A Variable lymphocyte rec 99.1 3E-10 1E-14 111.2 11.5 126 462-592 30-157 (208)
138 2ell_A Acidic leucine-rich nuc 99.1 1.6E-10 5.4E-15 108.8 8.9 119 444-567 23-158 (168)
139 1a9n_A U2A', U2A'; complex (nu 99.1 7.9E-11 2.7E-15 111.8 6.2 100 463-568 22-125 (176)
140 4b8c_D Glucose-repressible alc 99.1 5.3E-11 1.8E-15 138.9 5.7 107 440-547 219-333 (727)
141 1sxj_B Activator 1 37 kDa subu 99.0 2.8E-09 9.4E-14 112.3 16.5 187 180-392 21-212 (323)
142 2je0_A Acidic leucine-rich nuc 99.0 1.3E-10 4.3E-15 107.0 5.3 115 443-560 15-146 (149)
143 3g39_A Variable lymphocyte rec 99.0 5.6E-10 1.9E-14 105.0 9.4 102 463-569 12-115 (170)
144 2r9u_A Variable lymphocyte rec 99.0 8.9E-10 3E-14 104.0 9.4 101 463-569 15-118 (174)
145 1a9n_A U2A', U2A'; complex (nu 99.0 2.4E-10 8.2E-15 108.4 4.7 115 443-560 17-146 (176)
146 2o6r_A Variable lymphocyte rec 99.0 2.8E-09 9.6E-14 101.1 11.2 95 464-560 11-106 (177)
147 4b8c_D Glucose-repressible alc 99.0 1.5E-10 5E-15 135.2 2.6 107 462-572 226-332 (727)
148 2o6r_A Variable lymphocyte rec 98.9 2.9E-09 9.9E-14 101.0 10.3 118 448-568 10-136 (177)
149 1dce_A Protein (RAB geranylger 98.9 1.5E-09 5.2E-14 122.5 9.5 114 445-560 441-566 (567)
150 3sb4_A Hypothetical leucine ri 98.9 2.1E-09 7.3E-14 113.3 7.8 57 734-798 269-327 (329)
151 1iqp_A RFCS; clamp loader, ext 98.8 3.1E-08 1.1E-12 104.3 15.3 183 180-391 25-213 (327)
152 1ds9_A Outer arm dynein; leuci 98.8 2E-10 6.8E-15 111.4 -4.2 100 463-568 51-152 (198)
153 3g39_A Variable lymphocyte rec 98.8 2.2E-08 7.4E-13 94.0 9.5 95 447-542 11-114 (170)
154 1ds9_A Outer arm dynein; leuci 98.7 6.8E-11 2.3E-15 114.7 -8.3 144 471-624 36-185 (198)
155 2r9u_A Variable lymphocyte rec 98.7 2.5E-08 8.7E-13 93.9 9.6 94 448-542 15-117 (174)
156 2ifg_A High affinity nerve gro 98.7 2.5E-08 8.4E-13 106.1 9.5 103 463-569 11-116 (347)
157 1jr3_A DNA polymerase III subu 98.7 2.7E-07 9.2E-12 99.1 17.3 195 180-390 16-221 (373)
158 3te6_A Regulatory protein SIR3 98.7 3.2E-07 1.1E-11 93.9 16.3 172 181-358 21-213 (318)
159 2chq_A Replication factor C sm 98.6 3.3E-07 1.1E-11 96.0 14.2 181 180-389 17-203 (319)
160 1jbk_A CLPB protein; beta barr 98.6 3.4E-07 1.2E-11 87.9 11.9 151 180-352 22-194 (195)
161 3sb4_A Hypothetical leucine ri 98.6 2.5E-07 8.4E-12 97.4 11.4 261 462-775 51-328 (329)
162 3bos_A Putative DNA replicatio 98.5 5.3E-07 1.8E-11 90.1 12.2 173 180-389 28-216 (242)
163 4fdw_A Leucine rich hypothetic 98.5 3.9E-06 1.3E-10 90.3 19.6 74 734-820 319-394 (401)
164 1hqc_A RUVB; extended AAA-ATPa 98.5 5.5E-07 1.9E-11 94.6 12.4 182 180-393 12-214 (324)
165 1sxj_D Activator 1 41 kDa subu 98.4 3.6E-06 1.2E-10 89.4 15.0 194 180-389 37-234 (353)
166 2z4s_A Chromosomal replication 98.3 4.3E-06 1.5E-10 91.0 14.3 181 207-408 130-331 (440)
167 3pvs_A Replication-associated 98.3 1E-05 3.5E-10 87.8 17.2 178 180-389 26-214 (447)
168 2qz4_A Paraplegin; AAA+, SPG7, 98.3 2.9E-05 9.9E-10 78.4 18.3 188 180-390 6-222 (262)
169 3uk6_A RUVB-like 2; hexameric 98.3 1.6E-05 5.4E-10 85.0 17.1 217 180-408 44-329 (368)
170 1sxj_E Activator 1 40 kDa subu 98.2 4.5E-06 1.5E-10 88.7 12.2 193 180-390 14-237 (354)
171 3h4m_A Proteasome-activating n 98.2 1.2E-05 4E-10 82.5 14.9 204 179-408 16-257 (285)
172 1a5t_A Delta prime, HOLB; zinc 98.2 2.6E-05 8.7E-10 81.8 17.6 169 186-388 8-203 (334)
173 4fdw_A Leucine rich hypothetic 98.2 1.1E-05 3.9E-10 86.6 15.0 74 484-560 158-232 (401)
174 3pfi_A Holliday junction ATP-d 98.2 1.4E-05 4.8E-10 84.2 15.3 178 180-390 29-227 (338)
175 1l8q_A Chromosomal replication 98.2 3.2E-05 1.1E-09 80.9 17.1 177 181-385 12-203 (324)
176 2ifg_A High affinity nerve gro 98.2 1.9E-06 6.5E-11 91.4 7.7 84 486-573 11-97 (347)
177 1sxj_A Activator 1 95 kDa subu 98.2 4.1E-06 1.4E-10 93.4 10.5 197 180-390 39-253 (516)
178 1d2n_A N-ethylmaleimide-sensit 98.2 4.1E-05 1.4E-09 77.8 16.7 196 180-407 33-259 (272)
179 3u61_B DNA polymerase accessor 98.2 1.1E-05 3.7E-10 84.5 12.6 169 180-386 26-212 (324)
180 3syl_A Protein CBBX; photosynt 98.1 2E-05 6.8E-10 81.9 14.0 162 181-358 32-219 (309)
181 2p65_A Hypothetical protein PF 98.1 4.3E-06 1.5E-10 79.5 7.2 45 180-230 22-66 (187)
182 3n70_A Transport activator; si 98.1 3.7E-06 1.3E-10 76.2 6.3 115 181-326 2-116 (145)
183 4fs7_A Uncharacterized protein 98.0 5.2E-05 1.8E-09 81.7 14.5 60 734-802 316-376 (394)
184 3un9_A NLR family member X1; l 98.0 2E-07 7E-12 99.3 -4.6 79 463-541 75-166 (372)
185 3eie_A Vacuolar protein sortin 98.0 0.00024 8.1E-09 74.0 18.8 184 180-390 18-228 (322)
186 3un9_A NLR family member X1; l 98.0 2.7E-07 9.1E-12 98.4 -4.0 122 444-567 71-222 (372)
187 2qp9_X Vacuolar protein sortin 98.0 0.0002 7E-09 75.4 18.2 185 180-390 51-261 (355)
188 1sxj_C Activator 1 40 kDa subu 98.0 5.1E-05 1.7E-09 79.8 13.6 175 180-386 25-208 (340)
189 3d8b_A Fidgetin-like protein 1 98.0 0.00013 4.3E-09 77.2 16.0 187 180-391 84-296 (357)
190 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00099 3.4E-08 69.1 21.5 187 180-391 12-224 (322)
191 3b9p_A CG5977-PA, isoform A; A 97.9 0.00063 2.1E-08 69.9 19.8 184 180-390 21-233 (297)
192 2w58_A DNAI, primosome compone 97.9 3.1E-05 1E-09 74.7 9.1 126 181-326 26-159 (202)
193 3ec2_A DNA replication protein 97.9 2.2E-05 7.7E-10 74.1 7.9 120 186-325 20-142 (180)
194 2ra8_A Uncharacterized protein 97.9 1.8E-06 6.3E-11 91.0 0.3 170 476-683 132-318 (362)
195 1qvr_A CLPB protein; coiled co 97.8 4.5E-05 1.6E-09 90.6 10.9 152 180-355 170-344 (854)
196 3pxg_A Negative regulator of g 97.8 9E-05 3.1E-09 81.3 12.4 146 180-357 180-339 (468)
197 3co5_A Putative two-component 97.8 2.2E-05 7.7E-10 70.7 5.9 111 180-325 4-115 (143)
198 3vfd_A Spastin; ATPase, microt 97.8 0.00051 1.8E-08 73.5 17.4 187 180-390 115-326 (389)
199 2gno_A DNA polymerase III, gam 97.8 0.00013 4.3E-09 74.9 11.6 149 184-356 1-152 (305)
200 3cf0_A Transitional endoplasmi 97.8 0.0004 1.4E-08 71.4 15.3 181 180-385 15-223 (301)
201 2ra8_A Uncharacterized protein 97.7 7.5E-06 2.6E-10 86.3 1.8 91 442-539 136-228 (362)
202 2zan_A Vacuolar protein sortin 97.7 0.00062 2.1E-08 74.1 16.0 188 180-390 134-345 (444)
203 1ojl_A Transcriptional regulat 97.7 0.00015 5.2E-09 74.5 10.5 160 180-354 2-188 (304)
204 2bjv_A PSP operon transcriptio 97.7 0.00012 4.1E-09 73.9 9.7 160 180-353 6-191 (265)
205 4fcw_A Chaperone protein CLPB; 97.7 0.00026 8.8E-09 73.4 12.4 166 181-356 18-229 (311)
206 4fs7_A Uncharacterized protein 97.6 0.00032 1.1E-08 75.4 13.2 60 734-802 293-353 (394)
207 3e4g_A ATP synthase subunit S, 97.6 6.8E-06 2.3E-10 75.7 -0.2 69 734-807 81-154 (176)
208 3rw6_A Nuclear RNA export fact 97.6 1.3E-05 4.4E-10 80.0 1.2 94 465-560 148-257 (267)
209 1ofh_A ATP-dependent HSL prote 97.6 0.00085 2.9E-08 69.4 15.2 153 180-354 15-213 (310)
210 3hu3_A Transitional endoplasmi 97.6 0.00048 1.7E-08 75.4 13.8 185 180-389 204-414 (489)
211 4b4t_J 26S protease regulatory 97.6 0.0016 5.6E-08 68.2 16.5 204 180-409 148-389 (405)
212 2c9o_A RUVB-like 1; hexameric 97.5 0.00065 2.2E-08 74.3 14.0 95 289-388 298-408 (456)
213 2kjq_A DNAA-related protein; s 97.5 7.7E-05 2.6E-09 67.5 5.1 86 208-325 37-124 (149)
214 3e4g_A ATP synthase subunit S, 97.5 2.8E-05 9.6E-10 71.6 2.0 42 737-783 113-154 (176)
215 4b4t_K 26S protease regulatory 97.5 0.0028 9.6E-08 67.5 17.2 177 180-382 172-378 (428)
216 3pxi_A Negative regulator of g 97.5 0.00047 1.6E-08 80.8 12.4 145 180-356 180-338 (758)
217 4b4t_L 26S protease subunit RP 97.4 0.0029 1E-07 67.5 16.7 178 180-383 181-387 (437)
218 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00095 3.3E-08 78.4 14.3 155 180-356 186-362 (758)
219 3pxi_A Negative regulator of g 97.4 0.00019 6.4E-09 84.3 8.1 156 180-356 491-675 (758)
220 3rw6_A Nuclear RNA export fact 97.4 7.6E-05 2.6E-09 74.4 3.9 74 463-537 173-258 (267)
221 1lv7_A FTSH; alpha/beta domain 97.4 0.0025 8.5E-08 63.8 15.0 204 180-408 12-251 (257)
222 4b4t_H 26S protease regulatory 97.3 0.0023 7.9E-08 68.0 14.5 178 180-383 209-415 (467)
223 1in4_A RUVB, holliday junction 97.3 0.0025 8.7E-08 66.4 14.9 175 180-387 25-220 (334)
224 1io0_A Tropomodulin; LRR prote 97.2 0.00011 3.8E-09 69.5 2.6 17 439-455 30-46 (185)
225 1io0_A Tropomodulin; LRR prote 97.2 4.8E-05 1.6E-09 72.0 -0.2 75 463-537 39-128 (185)
226 4gt6_A Cell surface protein; l 97.2 0.004 1.4E-07 66.8 14.6 64 734-806 307-371 (394)
227 2ce7_A Cell division protein F 97.2 0.0063 2.2E-07 66.0 15.8 179 180-383 16-221 (476)
228 4b4t_M 26S protease regulatory 97.1 0.0017 5.7E-08 69.3 9.9 177 180-382 181-386 (434)
229 2r44_A Uncharacterized protein 97.1 0.0015 5.2E-08 68.2 9.5 151 180-357 27-199 (331)
230 2r62_A Cell division protease 97.0 0.00032 1.1E-08 70.9 3.7 180 180-384 11-219 (268)
231 4b4t_I 26S protease regulatory 97.0 0.0032 1.1E-07 66.3 11.1 203 180-408 182-422 (437)
232 2qgz_A Helicase loader, putati 96.9 0.0013 4.5E-08 67.5 7.6 121 186-326 134-258 (308)
233 3t15_A Ribulose bisphosphate c 96.9 0.0055 1.9E-07 62.5 12.2 25 206-230 35-59 (293)
234 3m6a_A ATP-dependent protease 96.9 0.0069 2.4E-07 67.5 13.4 162 180-356 81-266 (543)
235 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0032 1.1E-07 73.9 11.0 165 181-356 459-666 (758)
236 2cvh_A DNA repair and recombin 96.8 0.0059 2E-07 59.3 10.8 85 206-296 19-115 (220)
237 1qvr_A CLPB protein; coiled co 96.8 0.0036 1.2E-07 74.3 10.9 135 181-325 559-710 (854)
238 4gt6_A Cell surface protein; l 96.8 0.0094 3.2E-07 63.8 13.3 59 734-802 330-388 (394)
239 3cf2_A TER ATPase, transitiona 96.8 0.0035 1.2E-07 72.2 10.2 179 180-383 204-407 (806)
240 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00079 2.7E-08 68.0 4.1 68 207-296 123-192 (331)
241 2b8t_A Thymidine kinase; deoxy 96.8 0.0014 4.9E-08 63.1 5.7 113 206-326 11-126 (223)
242 3nbx_X ATPase RAVA; AAA+ ATPas 96.7 0.011 3.6E-07 64.7 12.9 42 181-230 23-64 (500)
243 1um8_A ATP-dependent CLP prote 96.5 0.015 5E-07 61.8 12.2 23 207-229 72-94 (376)
244 1jr3_D DNA polymerase III, del 96.4 0.059 2E-06 56.3 16.2 157 206-388 17-183 (343)
245 1ypw_A Transitional endoplasmi 96.4 0.01 3.5E-07 69.5 11.0 179 180-383 204-407 (806)
246 3hr8_A Protein RECA; alpha and 96.4 0.012 4.3E-07 61.0 10.1 83 206-295 60-148 (356)
247 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.015 5.1E-07 57.0 10.4 115 207-326 23-168 (235)
248 2x8a_A Nuclear valosin-contain 96.3 0.04 1.4E-06 55.3 13.0 127 210-357 47-192 (274)
249 3io5_A Recombination and repai 96.1 0.021 7.1E-07 57.5 9.9 82 209-295 30-120 (333)
250 1v5w_A DMC1, meiotic recombina 96.0 0.038 1.3E-06 57.6 11.9 89 206-295 121-228 (343)
251 1g5t_A COB(I)alamin adenosyltr 96.0 0.011 3.7E-07 55.2 6.5 118 208-327 29-164 (196)
252 2z43_A DNA repair and recombin 95.9 0.024 8.2E-07 58.6 9.8 89 206-295 106-212 (324)
253 1n0w_A DNA repair protein RAD5 95.9 0.018 6.2E-07 56.7 8.4 90 206-296 23-129 (243)
254 2i1q_A DNA repair and recombin 95.9 0.016 5.6E-07 59.9 8.2 58 206-264 97-168 (322)
255 1xp8_A RECA protein, recombina 95.8 0.035 1.2E-06 58.0 10.6 82 207-295 74-161 (366)
256 4h09_A Hypothetical leucine ri 95.8 0.1 3.6E-06 55.2 14.5 34 764-799 306-340 (379)
257 1iy2_A ATP-dependent metallopr 95.8 0.029 1E-06 56.6 9.4 178 179-383 39-245 (278)
258 2zr9_A Protein RECA, recombina 95.8 0.038 1.3E-06 57.5 10.4 83 206-295 60-148 (349)
259 2dhr_A FTSH; AAA+ protein, hex 95.7 0.029 1E-06 61.1 9.6 176 179-383 30-236 (499)
260 2px0_A Flagellar biosynthesis 95.7 0.03 1E-06 56.8 8.9 87 206-295 104-191 (296)
261 1u94_A RECA protein, recombina 95.6 0.032 1.1E-06 58.1 9.2 83 206-295 62-150 (356)
262 3rfe_A Platelet glycoprotein I 95.5 0.015 5.1E-07 50.8 5.4 53 463-517 11-66 (130)
263 1rz3_A Hypothetical protein rb 95.5 0.015 5E-07 55.5 5.7 42 185-229 3-44 (201)
264 1vma_A Cell division protein F 95.2 0.093 3.2E-06 53.3 10.9 88 206-295 103-195 (306)
265 1cr0_A DNA primase/helicase; R 95.2 0.069 2.4E-06 54.4 10.0 39 206-246 34-73 (296)
266 2pze_A Cystic fibrosis transme 95.1 0.18 6.1E-06 48.9 12.1 24 207-230 34-57 (229)
267 3bh0_A DNAB-like replicative h 95.1 0.064 2.2E-06 55.1 9.3 52 206-261 67-118 (315)
268 1odf_A YGR205W, hypothetical 3 94.9 0.14 4.8E-06 51.6 11.2 81 205-285 29-117 (290)
269 1pzn_A RAD51, DNA repair and r 94.9 0.085 2.9E-06 55.0 9.7 89 206-295 130-240 (349)
270 1j8m_F SRP54, signal recogniti 94.9 0.21 7.3E-06 50.4 12.4 87 207-295 98-189 (297)
271 3dm5_A SRP54, signal recogniti 94.9 0.21 7.3E-06 53.1 12.7 24 206-229 99-122 (443)
272 1mv5_A LMRA, multidrug resista 94.8 0.22 7.4E-06 48.8 11.9 24 206-229 27-50 (243)
273 3c8u_A Fructokinase; YP_612366 94.8 0.023 7.8E-07 54.5 4.7 38 188-229 7-44 (208)
274 2orw_A Thymidine kinase; TMTK, 94.8 0.0045 1.5E-07 58.1 -0.4 22 208-229 4-25 (184)
275 3tqc_A Pantothenate kinase; bi 94.7 0.071 2.4E-06 54.4 8.4 99 182-286 69-171 (321)
276 4h09_A Hypothetical leucine ri 94.7 0.11 3.6E-06 55.2 10.2 60 734-801 259-319 (379)
277 2r6a_A DNAB helicase, replicat 94.7 1.4 4.8E-05 47.7 19.1 51 206-259 202-252 (454)
278 4a1f_A DNAB helicase, replicat 94.6 0.1 3.5E-06 53.6 9.4 52 206-261 45-96 (338)
279 2cbz_A Multidrug resistance-as 94.6 0.16 5.3E-06 49.6 10.3 24 207-230 31-54 (237)
280 4a74_A DNA repair and recombin 94.6 0.1 3.6E-06 50.6 9.1 46 206-251 24-73 (231)
281 3lda_A DNA repair protein RAD5 94.6 0.098 3.4E-06 55.3 9.2 89 206-295 177-282 (400)
282 1sky_E F1-ATPase, F1-ATP synth 94.5 0.12 4.3E-06 55.1 9.8 87 208-295 152-254 (473)
283 2ffh_A Protein (FFH); SRP54, s 94.5 0.19 6.6E-06 53.3 11.3 86 207-295 98-189 (425)
284 3ice_A Transcription terminati 94.5 0.03 1E-06 57.8 4.7 98 191-295 163-270 (422)
285 3kl4_A SRP54, signal recogniti 94.4 0.26 9E-06 52.4 12.1 89 206-296 96-189 (433)
286 1qhx_A CPT, protein (chloramph 94.4 0.02 6.8E-07 53.3 3.1 22 208-229 4-25 (178)
287 1zp6_A Hypothetical protein AT 94.3 0.025 8.7E-07 53.3 3.8 25 206-230 8-32 (191)
288 2pjz_A Hypothetical protein ST 94.3 0.18 6.1E-06 50.0 10.1 121 208-331 31-190 (263)
289 2dr3_A UPF0273 protein PH0284; 94.2 0.24 8.2E-06 48.6 10.8 39 207-247 23-61 (247)
290 3lw7_A Adenylate kinase relate 94.1 0.024 8.3E-07 52.5 3.1 20 208-227 2-21 (179)
291 2j37_W Signal recognition part 94.1 0.5 1.7E-05 51.4 13.7 55 189-245 80-137 (504)
292 3vaa_A Shikimate kinase, SK; s 94.1 0.024 8.1E-07 53.9 2.9 23 207-229 25-47 (199)
293 3kb2_A SPBC2 prophage-derived 94.0 0.026 8.9E-07 52.1 3.1 22 208-229 2-23 (173)
294 3uie_A Adenylyl-sulfate kinase 94.0 0.033 1.1E-06 53.0 3.9 24 206-229 24-47 (200)
295 3hws_A ATP-dependent CLP prote 94.0 0.034 1.1E-06 58.7 4.3 49 181-229 16-73 (363)
296 1ly1_A Polynucleotide kinase; 94.0 0.029 1E-06 52.2 3.4 22 208-229 3-24 (181)
297 2xxa_A Signal recognition part 94.0 0.27 9.1E-06 52.7 11.1 39 206-246 99-138 (433)
298 1ls1_A Signal recognition part 93.9 0.23 7.7E-06 50.3 10.1 87 207-295 98-189 (295)
299 2ga8_A Hypothetical 39.9 kDa p 93.9 0.051 1.7E-06 55.8 5.1 45 183-229 2-46 (359)
300 1zu4_A FTSY; GTPase, signal re 93.8 0.29 9.8E-06 50.1 10.6 39 206-246 104-142 (320)
301 1kgd_A CASK, peripheral plasma 93.8 0.03 1E-06 52.2 2.9 23 207-229 5-27 (180)
302 1gvn_B Zeta; postsegregational 93.7 0.064 2.2E-06 54.2 5.5 25 205-229 31-55 (287)
303 3trf_A Shikimate kinase, SK; a 93.7 0.03 1E-06 52.5 2.8 23 207-229 5-27 (185)
304 3fwy_A Light-independent proto 93.7 0.07 2.4E-06 54.5 5.7 41 205-247 46-86 (314)
305 3tui_C Methionine import ATP-b 93.7 0.3 1E-05 50.6 10.5 128 206-333 53-231 (366)
306 1kag_A SKI, shikimate kinase I 93.7 0.029 1E-06 51.8 2.7 22 208-229 5-26 (173)
307 3rfe_A Platelet glycoprotein I 93.6 0.091 3.1E-06 45.7 5.7 53 486-541 11-66 (130)
308 3e70_C DPA, signal recognition 93.6 0.4 1.4E-05 49.2 11.4 24 206-229 128-151 (328)
309 2rhm_A Putative kinase; P-loop 93.5 0.043 1.5E-06 51.7 3.7 24 206-229 4-27 (193)
310 1knq_A Gluconate kinase; ALFA/ 93.5 0.048 1.6E-06 50.5 3.9 24 206-229 7-30 (175)
311 1nks_A Adenylate kinase; therm 93.5 0.041 1.4E-06 51.8 3.5 22 208-229 2-23 (194)
312 1ixz_A ATP-dependent metallopr 93.5 0.044 1.5E-06 54.4 3.8 177 180-383 16-221 (254)
313 4gp7_A Metallophosphoesterase; 93.4 0.041 1.4E-06 50.7 3.1 24 206-229 8-31 (171)
314 4eun_A Thermoresistant glucoki 93.3 0.04 1.4E-06 52.4 3.1 24 206-229 28-51 (200)
315 3asz_A Uridine kinase; cytidin 93.3 0.05 1.7E-06 52.2 3.8 24 206-229 5-28 (211)
316 2p5t_B PEZT; postsegregational 93.3 0.067 2.3E-06 53.0 4.8 40 189-229 15-54 (253)
317 2yvu_A Probable adenylyl-sulfa 93.3 0.09 3.1E-06 49.2 5.4 25 206-230 12-36 (186)
318 1z47_A CYSA, putative ABC-tran 93.3 0.39 1.3E-05 49.7 10.6 126 208-333 42-213 (355)
319 1ex7_A Guanylate kinase; subst 93.3 0.034 1.2E-06 51.8 2.4 22 208-229 2-23 (186)
320 2qt1_A Nicotinamide riboside k 93.2 0.062 2.1E-06 51.3 4.3 24 206-229 20-43 (207)
321 2bdt_A BH3686; alpha-beta prot 93.2 0.049 1.7E-06 51.2 3.5 22 208-229 3-24 (189)
322 2ck3_D ATP synthase subunit be 93.2 0.46 1.6E-05 50.6 11.1 99 191-295 142-262 (482)
323 1uf9_A TT1252 protein; P-loop, 93.2 0.053 1.8E-06 51.5 3.7 24 206-229 7-30 (203)
324 1g8p_A Magnesium-chelatase 38 93.2 0.036 1.2E-06 58.1 2.7 44 180-229 24-67 (350)
325 3t61_A Gluconokinase; PSI-biol 93.1 0.037 1.3E-06 52.7 2.6 23 207-229 18-40 (202)
326 3tau_A Guanylate kinase, GMP k 93.1 0.048 1.6E-06 52.2 3.3 25 206-230 7-31 (208)
327 1zuh_A Shikimate kinase; alpha 93.1 0.041 1.4E-06 50.6 2.7 24 206-229 6-29 (168)
328 2ze6_A Isopentenyl transferase 93.1 0.048 1.6E-06 54.0 3.4 22 208-229 2-23 (253)
329 3iij_A Coilin-interacting nucl 93.1 0.037 1.3E-06 51.5 2.3 23 207-229 11-33 (180)
330 1kht_A Adenylate kinase; phosp 93.1 0.047 1.6E-06 51.3 3.1 22 208-229 4-25 (192)
331 3upu_A ATP-dependent DNA helic 93.0 0.15 5.1E-06 55.5 7.5 22 209-230 47-68 (459)
332 1xjc_A MOBB protein homolog; s 93.0 0.087 3E-06 48.0 4.7 24 206-229 3-26 (169)
333 3jvv_A Twitching mobility prot 93.0 0.048 1.7E-06 56.8 3.3 110 207-329 123-234 (356)
334 3tr0_A Guanylate kinase, GMP k 93.0 0.051 1.7E-06 51.8 3.3 23 207-229 7-29 (205)
335 1ukz_A Uridylate kinase; trans 93.0 0.059 2E-06 51.3 3.8 24 206-229 14-37 (203)
336 2plr_A DTMP kinase, probable t 93.0 0.14 4.8E-06 48.9 6.5 22 208-229 5-26 (213)
337 2it1_A 362AA long hypothetical 93.0 0.48 1.6E-05 49.2 10.8 127 207-333 29-201 (362)
338 1ye8_A Protein THEP1, hypothet 92.9 0.055 1.9E-06 50.2 3.3 22 209-230 2-23 (178)
339 1y63_A LMAJ004144AAA protein; 92.9 0.055 1.9E-06 50.6 3.3 24 206-229 9-32 (184)
340 3a00_A Guanylate kinase, GMP k 92.9 0.04 1.4E-06 51.6 2.3 22 208-229 2-23 (186)
341 2qor_A Guanylate kinase; phosp 92.9 0.042 1.4E-06 52.4 2.5 24 206-229 11-34 (204)
342 2if2_A Dephospho-COA kinase; a 92.9 0.053 1.8E-06 51.7 3.2 21 209-229 3-23 (204)
343 3cf2_A TER ATPase, transitiona 92.8 0.48 1.7E-05 54.6 11.5 177 180-382 477-682 (806)
344 2yhs_A FTSY, cell division pro 92.8 0.55 1.9E-05 50.5 11.1 42 206-250 292-333 (503)
345 1jjv_A Dephospho-COA kinase; P 92.8 0.063 2.2E-06 51.2 3.6 22 208-229 3-24 (206)
346 2jaq_A Deoxyguanosine kinase; 92.7 0.055 1.9E-06 51.5 3.1 21 209-229 2-22 (205)
347 1tev_A UMP-CMP kinase; ploop, 92.7 0.061 2.1E-06 50.7 3.4 23 207-229 3-25 (196)
348 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.062 2.1E-06 53.5 3.5 24 206-229 3-26 (260)
349 1uj2_A Uridine-cytidine kinase 92.7 0.062 2.1E-06 53.2 3.5 24 206-229 21-44 (252)
350 1via_A Shikimate kinase; struc 92.7 0.054 1.9E-06 50.1 2.9 21 209-229 6-26 (175)
351 2j41_A Guanylate kinase; GMP, 92.7 0.059 2E-06 51.4 3.2 24 207-230 6-29 (207)
352 2hf9_A Probable hydrogenase ni 92.6 0.1 3.5E-06 50.5 5.0 25 206-230 37-61 (226)
353 3l0o_A Transcription terminati 92.6 0.06 2.1E-06 55.5 3.3 100 190-295 163-271 (427)
354 1fx0_B ATP synthase beta chain 92.6 0.31 1.1E-05 52.2 8.9 89 206-295 164-275 (498)
355 3cm0_A Adenylate kinase; ATP-b 92.6 0.071 2.4E-06 49.8 3.6 23 207-229 4-26 (186)
356 2c95_A Adenylate kinase 1; tra 92.6 0.059 2E-06 50.9 3.1 23 207-229 9-31 (196)
357 2wsm_A Hydrogenase expression/ 92.6 0.1 3.5E-06 50.3 4.9 40 185-230 14-53 (221)
358 3tlx_A Adenylate kinase 2; str 92.5 0.1 3.6E-06 51.2 4.9 24 206-229 28-51 (243)
359 2grj_A Dephospho-COA kinase; T 92.5 0.08 2.7E-06 49.7 3.8 25 205-229 10-34 (192)
360 3aez_A Pantothenate kinase; tr 92.5 0.073 2.5E-06 54.4 3.8 24 206-229 89-112 (312)
361 1cke_A CK, MSSA, protein (cyti 92.5 0.061 2.1E-06 52.2 3.1 22 208-229 6-27 (227)
362 1htw_A HI0065; nucleotide-bind 92.5 0.084 2.9E-06 47.7 3.8 24 206-229 32-55 (158)
363 2iyv_A Shikimate kinase, SK; t 92.4 0.051 1.7E-06 50.8 2.3 21 209-229 4-24 (184)
364 1lvg_A Guanylate kinase, GMP k 92.4 0.052 1.8E-06 51.5 2.4 22 208-229 5-26 (198)
365 1nn5_A Similar to deoxythymidy 92.4 0.2 6.9E-06 47.9 6.7 23 207-229 9-31 (215)
366 3ney_A 55 kDa erythrocyte memb 92.3 0.069 2.4E-06 50.1 3.1 24 206-229 18-41 (197)
367 2pbr_A DTMP kinase, thymidylat 92.3 0.24 8E-06 46.5 7.0 21 209-229 2-22 (195)
368 1e6c_A Shikimate kinase; phosp 92.3 0.05 1.7E-06 50.2 2.2 22 208-229 3-24 (173)
369 2q6t_A DNAB replication FORK h 92.3 0.66 2.3E-05 50.1 11.4 53 206-261 199-251 (444)
370 1qf9_A UMP/CMP kinase, protein 92.3 0.077 2.6E-06 49.9 3.5 24 206-229 5-28 (194)
371 2z0h_A DTMP kinase, thymidylat 92.3 0.23 7.9E-06 46.7 6.8 21 209-229 2-22 (197)
372 2pt5_A Shikimate kinase, SK; a 92.3 0.071 2.4E-06 48.9 3.1 21 209-229 2-22 (168)
373 2bwj_A Adenylate kinase 5; pho 92.2 0.073 2.5E-06 50.4 3.2 22 208-229 13-34 (199)
374 2cdn_A Adenylate kinase; phosp 92.2 0.073 2.5E-06 50.5 3.2 24 206-229 19-42 (201)
375 1znw_A Guanylate kinase, GMP k 92.2 0.077 2.6E-06 50.7 3.3 24 206-229 19-42 (207)
376 1tue_A Replication protein E1; 92.1 0.092 3.1E-06 49.1 3.6 37 188-229 44-80 (212)
377 2jeo_A Uridine-cytidine kinase 92.1 0.088 3E-06 51.8 3.8 24 206-229 24-47 (245)
378 2bbw_A Adenylate kinase 4, AK4 92.1 0.075 2.6E-06 52.4 3.3 23 207-229 27-49 (246)
379 3cmu_A Protein RECA, recombina 92.0 0.31 1.1E-05 61.5 9.2 84 206-296 1426-1515(2050)
380 2f6r_A COA synthase, bifunctio 91.9 0.1 3.5E-06 52.5 4.0 23 206-228 74-96 (281)
381 2pez_A Bifunctional 3'-phospho 91.9 0.094 3.2E-06 48.7 3.5 24 206-229 4-27 (179)
382 4e22_A Cytidylate kinase; P-lo 91.9 0.083 2.8E-06 52.3 3.3 23 207-229 27-49 (252)
383 1oxx_K GLCV, glucose, ABC tran 91.9 0.72 2.5E-05 47.8 10.4 127 207-333 31-208 (353)
384 1q57_A DNA primase/helicase; d 91.9 0.59 2E-05 51.5 10.5 53 206-261 241-293 (503)
385 1z6g_A Guanylate kinase; struc 91.7 0.071 2.4E-06 51.4 2.5 23 207-229 23-45 (218)
386 3umf_A Adenylate kinase; rossm 91.7 0.12 4E-06 49.5 4.0 25 205-229 27-51 (217)
387 1s96_A Guanylate kinase, GMP k 91.7 0.086 3E-06 50.7 3.1 24 206-229 15-38 (219)
388 1rj9_A FTSY, signal recognitio 91.7 0.087 3E-06 53.6 3.2 24 206-229 101-124 (304)
389 2vli_A Antibiotic resistance p 91.7 0.06 2.1E-06 50.2 1.9 23 207-229 5-27 (183)
390 3hjn_A DTMP kinase, thymidylat 91.7 0.38 1.3E-05 45.3 7.5 49 210-260 3-51 (197)
391 3p32_A Probable GTPase RV1496/ 91.7 0.31 1.1E-05 50.9 7.5 37 189-229 65-101 (355)
392 1sq5_A Pantothenate kinase; P- 91.6 0.2 6.8E-06 51.2 5.9 24 206-229 79-102 (308)
393 1aky_A Adenylate kinase; ATP:A 91.5 0.087 3E-06 50.9 2.9 23 207-229 4-26 (220)
394 1m7g_A Adenylylsulfate kinase; 91.4 0.11 3.9E-06 49.6 3.6 24 206-229 24-47 (211)
395 2f1r_A Molybdopterin-guanine d 91.4 0.064 2.2E-06 49.3 1.7 23 208-230 3-25 (171)
396 2wwf_A Thymidilate kinase, put 91.4 0.1 3.5E-06 50.0 3.2 23 207-229 10-32 (212)
397 1zd8_A GTP:AMP phosphotransfer 91.3 0.1 3.5E-06 50.6 3.2 23 207-229 7-29 (227)
398 2pt7_A CAG-ALFA; ATPase, prote 91.3 0.26 8.8E-06 50.8 6.4 105 208-327 172-276 (330)
399 2ged_A SR-beta, signal recogni 91.3 0.15 5.3E-06 47.7 4.4 25 206-230 47-71 (193)
400 1gtv_A TMK, thymidylate kinase 91.2 0.059 2E-06 51.8 1.3 21 209-229 2-22 (214)
401 1vht_A Dephospho-COA kinase; s 91.2 0.13 4.3E-06 49.6 3.7 23 207-229 4-26 (218)
402 3end_A Light-independent proto 91.2 0.21 7.3E-06 51.0 5.6 42 205-248 39-80 (307)
403 3bgw_A DNAB-like replicative h 91.2 0.96 3.3E-05 48.6 10.9 52 206-261 196-247 (444)
404 3b9q_A Chloroplast SRP recepto 91.2 0.13 4.3E-06 52.3 3.8 24 206-229 99-122 (302)
405 2i3b_A HCR-ntpase, human cance 91.1 0.098 3.3E-06 49.0 2.7 22 209-230 3-24 (189)
406 2j9r_A Thymidine kinase; TK1, 91.1 0.26 8.9E-06 46.6 5.6 111 206-327 27-139 (214)
407 3fb4_A Adenylate kinase; psych 91.1 0.11 3.8E-06 49.9 3.1 21 209-229 2-22 (216)
408 3nwj_A ATSK2; P loop, shikimat 91.0 0.086 2.9E-06 51.8 2.2 22 208-229 49-70 (250)
409 2onk_A Molybdate/tungstate ABC 90.9 0.11 3.8E-06 50.7 3.0 125 208-332 25-193 (240)
410 3cmu_A Protein RECA, recombina 90.9 0.56 1.9E-05 59.3 9.8 85 206-297 382-472 (2050)
411 1zak_A Adenylate kinase; ATP:A 90.9 0.097 3.3E-06 50.6 2.6 23 207-229 5-27 (222)
412 1np6_A Molybdopterin-guanine d 90.9 0.11 3.8E-06 47.8 2.8 25 206-230 5-29 (174)
413 2pcj_A ABC transporter, lipopr 90.9 0.12 4.1E-06 50.0 3.2 22 208-229 31-52 (224)
414 3d3q_A TRNA delta(2)-isopenten 90.9 0.13 4.3E-06 52.8 3.4 22 208-229 8-29 (340)
415 3dl0_A Adenylate kinase; phosp 90.8 0.12 4.1E-06 49.6 3.1 21 209-229 2-22 (216)
416 2v54_A DTMP kinase, thymidylat 90.8 0.12 4.2E-06 49.0 3.1 22 208-229 5-26 (204)
417 1g41_A Heat shock protein HSLU 90.8 0.16 5.3E-06 54.3 4.2 50 180-229 15-72 (444)
418 3tif_A Uncharacterized ABC tra 90.8 0.12 4.1E-06 50.4 3.1 23 207-229 31-53 (235)
419 3k1j_A LON protease, ATP-depen 90.8 0.17 5.9E-06 57.1 4.8 43 180-230 41-83 (604)
420 3vr4_D V-type sodium ATPase su 90.7 0.4 1.4E-05 50.8 7.1 86 208-295 152-257 (465)
421 3ake_A Cytidylate kinase; CMP 90.7 0.13 4.3E-06 49.1 3.1 21 209-229 4-24 (208)
422 3a8t_A Adenylate isopentenyltr 90.7 0.15 5.3E-06 51.9 3.8 24 206-229 39-62 (339)
423 2ehv_A Hypothetical protein PH 90.6 0.13 4.5E-06 50.7 3.3 40 206-246 29-68 (251)
424 3e1s_A Exodeoxyribonuclease V, 90.6 0.37 1.3E-05 53.8 7.2 22 208-229 205-226 (574)
425 1cp2_A CP2, nitrogenase iron p 90.6 0.28 9.6E-06 48.9 5.7 38 208-247 2-39 (269)
426 1tf7_A KAIC; homohexamer, hexa 90.4 0.25 8.6E-06 54.8 5.7 25 206-230 280-304 (525)
427 3j16_B RLI1P; ribosome recycli 90.4 1.4 4.7E-05 49.4 11.6 25 206-230 102-126 (608)
428 1yrb_A ATP(GTP)binding protein 90.4 0.16 5.3E-06 50.6 3.7 24 206-229 13-36 (262)
429 3be4_A Adenylate kinase; malar 90.4 0.12 4.1E-06 49.7 2.7 22 208-229 6-27 (217)
430 2afh_E Nitrogenase iron protei 90.4 0.3 1E-05 49.3 5.8 39 207-247 2-40 (289)
431 3b85_A Phosphate starvation-in 90.4 0.11 3.9E-06 49.4 2.4 23 208-230 23-45 (208)
432 3r20_A Cytidylate kinase; stru 90.4 0.15 5.1E-06 49.3 3.3 23 207-229 9-31 (233)
433 2og2_A Putative signal recogni 90.3 0.24 8.2E-06 51.4 4.9 24 206-229 156-179 (359)
434 3crm_A TRNA delta(2)-isopenten 90.3 0.15 5.2E-06 51.8 3.4 23 207-229 5-27 (323)
435 2r8r_A Sensor protein; KDPD, P 90.3 0.46 1.6E-05 45.3 6.5 105 208-326 7-127 (228)
436 1xx6_A Thymidine kinase; NESG, 90.2 0.12 4.2E-06 48.3 2.4 110 206-326 7-118 (191)
437 4eaq_A DTMP kinase, thymidylat 90.2 0.36 1.2E-05 46.7 5.9 25 206-230 25-49 (229)
438 2r9v_A ATP synthase subunit al 90.2 0.51 1.7E-05 50.6 7.4 86 206-295 174-276 (515)
439 3lnc_A Guanylate kinase, GMP k 90.1 0.1 3.6E-06 50.7 2.0 23 207-229 27-50 (231)
440 3gfo_A Cobalt import ATP-bindi 90.1 0.15 5E-06 51.0 3.1 22 208-229 35-56 (275)
441 1b0u_A Histidine permease; ABC 90.1 0.15 5E-06 50.7 3.1 24 206-229 31-54 (262)
442 2wji_A Ferrous iron transport 90.1 0.2 6.9E-06 45.6 3.8 23 208-230 4-26 (165)
443 3exa_A TRNA delta(2)-isopenten 90.1 0.16 5.6E-06 51.0 3.4 23 207-229 3-25 (322)
444 1pgv_A TMD-1, tropomodulin TMD 90.1 0.21 7E-06 46.8 3.8 14 441-454 37-50 (197)
445 1e4v_A Adenylate kinase; trans 90.0 0.16 5.5E-06 48.7 3.2 21 209-229 2-22 (214)
446 2eyu_A Twitching motility prot 90.0 0.28 9.5E-06 48.6 5.0 110 206-329 24-136 (261)
447 3b5x_A Lipid A export ATP-bind 90.0 1.1 3.9E-05 50.1 10.7 24 206-229 368-391 (582)
448 4g1u_C Hemin import ATP-bindin 89.9 0.15 5.3E-06 50.6 3.1 23 207-229 37-59 (266)
449 1oix_A RAS-related protein RAB 89.9 0.21 7E-06 46.9 3.8 25 206-230 28-52 (191)
450 3cmw_A Protein RECA, recombina 89.9 0.62 2.1E-05 58.0 8.9 84 206-296 382-471 (1706)
451 3llm_A ATP-dependent RNA helic 89.9 1.4 4.9E-05 42.6 10.1 89 208-297 77-187 (235)
452 2qe7_A ATP synthase subunit al 89.9 0.52 1.8E-05 50.5 7.1 86 206-295 161-263 (502)
453 1ji0_A ABC transporter; ATP bi 89.8 0.16 5.5E-06 49.7 3.1 24 207-230 32-55 (240)
454 2xb4_A Adenylate kinase; ATP-b 89.8 0.16 5.6E-06 49.0 3.1 21 209-229 2-22 (223)
455 2olj_A Amino acid ABC transpor 89.8 0.16 5.5E-06 50.3 3.1 25 206-230 49-73 (263)
456 2zej_A Dardarin, leucine-rich 89.8 0.15 5.3E-06 47.4 2.8 22 209-230 4-25 (184)
457 2d2e_A SUFC protein; ABC-ATPas 89.8 0.17 5.9E-06 49.8 3.3 22 208-229 30-51 (250)
458 1nlf_A Regulatory protein REPA 89.8 0.32 1.1E-05 48.9 5.3 43 207-249 30-80 (279)
459 1g6h_A High-affinity branched- 89.8 0.16 5.5E-06 50.3 3.1 23 207-229 33-55 (257)
460 1sgw_A Putative ABC transporte 89.8 0.14 4.7E-06 49.0 2.5 23 208-230 36-58 (214)
461 1pgv_A TMD-1, tropomodulin TMD 89.7 0.17 5.9E-06 47.3 3.0 80 481-560 39-132 (197)
462 4dzz_A Plasmid partitioning pr 89.7 0.38 1.3E-05 45.5 5.6 44 208-253 2-46 (206)
463 2dyk_A GTP-binding protein; GT 89.6 0.21 7.1E-06 45.0 3.5 23 208-230 2-24 (161)
464 2fz4_A DNA repair protein RAD2 89.6 1.2 4.2E-05 43.2 9.3 104 210-324 111-227 (237)
465 1ak2_A Adenylate kinase isoenz 89.6 0.17 5.8E-06 49.3 3.1 23 207-229 16-38 (233)
466 2ff7_A Alpha-hemolysin translo 89.6 0.17 5.9E-06 49.7 3.1 23 208-230 36-58 (247)
467 3foz_A TRNA delta(2)-isopenten 89.6 0.22 7.4E-06 50.1 3.8 24 206-229 9-32 (316)
468 2zu0_C Probable ATP-dependent 89.5 0.18 6.3E-06 50.1 3.3 24 207-230 46-69 (267)
469 1vpl_A ABC transporter, ATP-bi 89.5 0.17 6E-06 49.9 3.1 24 207-230 41-64 (256)
470 2qmh_A HPR kinase/phosphorylas 89.5 0.2 7E-06 46.6 3.2 23 208-230 35-57 (205)
471 2v3c_C SRP54, signal recogniti 89.5 0.23 7.8E-06 53.1 4.2 38 206-245 98-135 (432)
472 3cmw_A Protein RECA, recombina 89.5 0.61 2.1E-05 58.1 8.3 83 206-295 1430-1518(1706)
473 3iqw_A Tail-anchored protein t 89.3 0.46 1.6E-05 48.9 6.2 47 206-254 15-61 (334)
474 3io3_A DEHA2D07832P; chaperone 89.3 0.44 1.5E-05 49.3 6.1 45 206-252 17-63 (348)
475 1ltq_A Polynucleotide kinase; 89.3 0.19 6.6E-06 51.1 3.4 22 208-229 3-24 (301)
476 2qi9_C Vitamin B12 import ATP- 89.3 0.19 6.3E-06 49.4 3.1 23 208-230 27-49 (249)
477 2ghi_A Transport protein; mult 89.3 0.19 6.4E-06 49.8 3.1 24 207-230 46-69 (260)
478 2ixe_A Antigen peptide transpo 89.2 0.19 6.5E-06 50.1 3.1 25 206-230 44-68 (271)
479 1a7j_A Phosphoribulokinase; tr 89.1 0.1 3.4E-06 52.8 1.0 24 206-229 4-27 (290)
480 2nq2_C Hypothetical ABC transp 89.1 0.2 6.7E-06 49.4 3.1 125 208-332 32-195 (253)
481 2c61_A A-type ATP synthase non 89.1 0.33 1.1E-05 51.8 4.9 89 207-295 152-258 (469)
482 2yz2_A Putative ABC transporte 89.1 0.2 6.7E-06 49.9 3.1 24 207-230 33-56 (266)
483 1u0j_A DNA replication protein 89.0 0.34 1.2E-05 47.6 4.7 37 189-229 90-126 (267)
484 2wjg_A FEOB, ferrous iron tran 89.0 0.31 1.1E-05 45.3 4.3 25 206-230 6-30 (188)
485 1tq4_A IIGP1, interferon-induc 89.0 0.26 8.9E-06 52.2 4.1 24 206-229 68-91 (413)
486 2ihy_A ABC transporter, ATP-bi 89.0 0.2 6.8E-06 50.2 3.1 24 207-230 47-70 (279)
487 2iw3_A Elongation factor 3A; a 89.0 2 6.7E-05 50.6 11.7 121 207-333 461-612 (986)
488 2f9l_A RAB11B, member RAS onco 89.0 0.19 6.6E-06 47.4 2.9 24 207-230 5-28 (199)
489 2vp4_A Deoxynucleoside kinase; 89.0 0.19 6.6E-06 48.8 2.9 24 206-229 19-42 (230)
490 4edh_A DTMP kinase, thymidylat 89.0 0.8 2.8E-05 43.6 7.2 24 207-230 6-29 (213)
491 1nij_A Hypothetical protein YJ 88.8 0.23 7.9E-06 50.9 3.5 25 206-230 3-27 (318)
492 1q3t_A Cytidylate kinase; nucl 88.8 0.22 7.5E-06 48.6 3.2 25 205-229 14-38 (236)
493 3gqb_B V-type ATP synthase bet 88.7 0.57 1.9E-05 49.6 6.4 89 207-295 147-260 (464)
494 3dzd_A Transcriptional regulat 88.7 0.34 1.2E-05 50.8 4.8 46 180-229 129-174 (368)
495 2ck3_A ATP synthase subunit al 88.7 0.73 2.5E-05 49.5 7.2 90 206-295 161-271 (510)
496 2ce2_X GTPase HRAS; signaling 88.7 0.23 8E-06 44.8 3.1 22 209-230 5-26 (166)
497 3sr0_A Adenylate kinase; phosp 88.6 0.23 8E-06 47.1 3.1 21 209-229 2-22 (206)
498 3mfy_A V-type ATP synthase alp 88.6 1.1 3.6E-05 48.6 8.4 96 191-295 216-333 (588)
499 3zvl_A Bifunctional polynucleo 88.6 0.21 7.2E-06 53.4 3.1 24 206-229 257-280 (416)
500 3fkq_A NTRC-like two-domain pr 88.5 0.49 1.7E-05 49.8 5.8 40 205-246 141-181 (373)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.98 E-value=3.7e-32 Score=308.05 Aligned_cols=213 Identities=20% Similarity=0.238 Sum_probs=173.6
Q ss_pred ecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc--ChhhhccCCeeEEEEeCCCc--cHHHHHHHH
Q 003300 183 CGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN--NDEVKRNFEKVIWVCVSDTF--EGIRVAKAI 258 (832)
Q Consensus 183 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 258 (832)
|||+.++++|.++|..... ...++|+|+|||||||||||+++|+ +.+++.+|+.++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 5999999999999976532 3689999999999999999999998 56889999999999999885 899999999
Q ss_pred HHHhCCCCC-------CCCcHHHHHHHHHHHHcCC-ceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHH
Q 003300 259 IEGLGVSAS-------GLSEFESLMKQIQEYIMGK-KFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVAL 330 (832)
Q Consensus 259 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 330 (832)
+.+++.... ...+.+.+...+.+.++++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 2335677889999999996 9999999998853212221 27999999999999988
Q ss_pred HhC-CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhh
Q 003300 331 QLG-SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSKSTVKEWQRILESE 409 (832)
Q Consensus 331 ~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~ 409 (832)
.++ ....|++++|+.++||+||.+.+|... .++...+++.+|+++|+|+||||+++|+.++.+ + .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 776 346799999999999999999987542 246678899999999999999999999999876 3 3344444444
Q ss_pred cc
Q 003300 410 MW 411 (832)
Q Consensus 410 ~~ 411 (832)
.+
T Consensus 355 l~ 356 (549)
T 2a5y_B 355 LE 356 (549)
T ss_dssp HH
T ss_pred hh
Confidence 33
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=6.8e-27 Score=266.57 Aligned_cols=226 Identities=21% Similarity=0.244 Sum_probs=168.0
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCe-eEEEEeCCCccHHHHHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 259 (832)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++..+...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999998532 4789999999999999999999987778889986 99999999988888888777
Q ss_pred HHhCCC------CCC-----CCcHHHHHHHHHHHH---cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCC
Q 003300 260 EGLGVS------ASG-----LSEFESLMKQIQEYI---MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRD 325 (832)
Q Consensus 260 ~~l~~~------~~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 325 (832)
..++.. ..+ ..+.+.+.+.+.+.+ .++|+||||||||+. +.|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 654221 001 113455666777766 689999999999873 555543 2 68999999999
Q ss_pred HHHHHHhCCcCeeeCC------CCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcCCC-C
Q 003300 326 RSVALQLGSIDIIPVK------ELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSKS-T 398 (832)
Q Consensus 326 ~~~~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~-~ 398 (832)
+.++..+.....+.++ +|+.+||++||.+.. +.. ..++..+ .|+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPRE---VLTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHH---HCCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHH---HhCCCHHHHHHHHHHHhCCCCC
Confidence 9988654443456666 999999999999983 221 1222333 39999999999999999884 6
Q ss_pred HHHHHHH--------HhhhcccccccC-CceEEEeee----ecCCCcccch
Q 003300 399 VKEWQRI--------LESEMWKVEEIG-QVIRQLRLF----FRPNTYKIRE 436 (832)
Q Consensus 399 ~~~w~~~--------~~~~~~~~~~~~-~~~~~l~cf----~fp~~~~i~~ 436 (832)
.++|+.. ++.....++... + +|| +||+++.|..
T Consensus 344 ~eeW~~~~~~~I~aaLelSYd~Lp~eelK-----~cFL~LAIFPed~~I~~ 389 (1221)
T 1vt4_I 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYR-----KMFDRLSVFPPSAHIPT 389 (1221)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHSCTTHHH-----HHHHHTTSSCTTSCEEH
T ss_pred HHHHhcCChhHHHHHHHHHHHhCCHHHHH-----HHHHHHhCCCCCCCCCH
Confidence 7888653 222222333333 2 566 8999988764
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=3.6e-25 Score=279.25 Aligned_cols=212 Identities=25% Similarity=0.403 Sum_probs=167.4
Q ss_pred ccCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhh-hccC-CeeEEEEeCCCcc--HH
Q 003300 177 IDEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFE--GI 252 (832)
Q Consensus 177 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~~ 252 (832)
.+...||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997654 37899999999999999999999997543 4445 6788999988544 44
Q ss_pred HHHHHHHHHhCCCC----CCCCcHHHHHHHHHHHHcCC--ceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH
Q 003300 253 RVAKAIIEGLGVSA----SGLSEFESLMKQIQEYIMGK--KFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR 326 (832)
Q Consensus 253 ~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 326 (832)
..+..++..+.... ....+.+.+.+.+...+.++ ||||||||+|+. ..|..+ .+|++||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCH
Confidence 55677777776543 22356788889999999877 999999999864 334332 5789999999999
Q ss_pred HHHHH-hCCcCeeeCCC-CChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHH
Q 003300 327 SVALQ-LGSIDIIPVKE-LGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSKSTVKEWQR 404 (832)
Q Consensus 327 ~~~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~ 404 (832)
.++.. .+....+.+.+ |+.+||++||...++.. .+...+.+.+|+++|+|+||||+++|++|+.+. ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 88744 45567899996 99999999999988432 234456789999999999999999999999875 35776
Q ss_pred HHhh
Q 003300 405 ILES 408 (832)
Q Consensus 405 ~~~~ 408 (832)
+++.
T Consensus 341 ~l~~ 344 (1249)
T 3sfz_A 341 YLRQ 344 (1249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.2e-25 Score=266.56 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChhhH-----
Q 003300 732 PSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPILE----- 806 (832)
Q Consensus 732 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~----- 806 (832)
..++.+++|+.|+++++ .+.+..|..++.+++|+.|+|++|.....+|..+..+++|++|++++|+.--
T Consensus 650 ~~l~~l~~L~~L~Ls~N------~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHN------DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGGCTTCCEEECCSS------CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHHhccccCCEEeCcCC------ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 34566677777755553 2333455667788888888888888666788888888888888888874310
Q ss_pred ----------------------HhhccCCCCCcccccccCccc
Q 003300 807 ----------------------NRYREGKGEDWHKISHIPHIK 827 (832)
Q Consensus 807 ----------------------~~~~~~~g~~~~~i~~ip~i~ 827 (832)
..|....+++|++++|+|.+.
T Consensus 724 ~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 724 GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred hhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 135567778999999999864
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.1e-24 Score=252.28 Aligned_cols=321 Identities=14% Similarity=0.108 Sum_probs=236.9
Q ss_pred HhhcccccEEEecCccccccC---------CCcEEecCCC-ccc--cccccCCCC-------ceeEEEeCCcCcccccc-
Q 003300 441 FSKLACLRALVIRQSLVIRLS---------SSPFRLHSNL-IRE--IPKNVGKLI-------HLRYLNLSELGIERLPK- 500 (832)
Q Consensus 441 f~~~~~Lr~L~~~~~~~~~~~---------~r~L~L~~n~-l~~--lp~~l~~l~-------~L~~L~Ls~~~i~~lp~- 500 (832)
|.++++|+.|.+.+|.+.... +++|+|++|. ++. +|..++++. +|++|+|++|.++.+|.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 558999999999987643221 4899999998 774 887766555 99999999999999999
Q ss_pred -cccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCC-CccCCceeeCCccCCCCccCccc
Q 003300 501 -TLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTS-LRTLDKFVVGGGIDGSNTCRLES 578 (832)
Q Consensus 501 -~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~-L~~L~~~~~~~~~~~~~~~~l~~ 578 (832)
.|+++++|++|++++|... .+| .|+.+++|++|++++|... .+|..+.++++ |+.|+ +.+|.+.. .+..+..
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~--Ls~N~L~~-lp~~~~~ 640 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG--FSHNKLKY-IPNIFNA 640 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE--CCSSCCCS-CCSCCCT
T ss_pred hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEE--CcCCCCCc-Cchhhhc
Confidence 8999999999999998855 888 7999999999999999655 88988999999 99998 77777652 3322222
Q ss_pred cccCCcCCceeecCCCCCCChhhhh-hhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEE
Q 003300 579 LKNLQLLRECGIEGLGNVSHLDEAE-RLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGII 657 (832)
Q Consensus 579 l~~L~~L~~l~i~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 657 (832)
+ ...+|+.+++.+..-....+... ......+.+|+.|++++|.+...+.. .+..+++|+.|+++
T Consensus 641 ~-~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~--------------~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 641 K-SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE--------------LFATGSPISTIILS 705 (876)
T ss_dssp T-CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH--------------HHHTTCCCSEEECC
T ss_pred c-ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH--------------HHccCCCCCEEECC
Confidence 2 12235566666533211111110 01112345899999999987654432 12246789999999
Q ss_pred eeCCCCCCchhcc--------ccCCcEEEEeccCCCCcCCCCCCccccce--eccccccceeeCccccCCCCCCCCCCCC
Q 003300 658 LYGGNIFPKWLTS--------LTNLRNLYLRSCVKCEHLPPLGKLPLEKL--ELRNLKSVKRVGNEFLGTEESSEDGPSS 727 (832)
Q Consensus 658 ~~~~~~~p~~l~~--------l~~L~~L~L~~~~~~~~l~~l~~lpL~~l--~l~~l~~L~~~~~~~~~~~~~~~~~~~~ 727 (832)
+|....+|.++.. +++|+.|+|++|... .+ |.... .+.+++.|++.+|.+.+.
T Consensus 706 ~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l------p~~l~~~~l~~L~~L~Ls~N~L~~l---------- 768 (876)
T 4ecn_A 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL------SDDFRATTLPYLSNMDVSYNCFSSF---------- 768 (876)
T ss_dssp SCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC------CGGGSTTTCTTCCEEECCSSCCSSC----------
T ss_pred CCcCCccChHHhccccccccccCCccEEECCCCCCc-cc------hHHhhhccCCCcCEEEeCCCCCCcc----------
Confidence 9998888887653 338999999999532 33 32222 455666677777777653
Q ss_pred CCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChhh
Q 003300 728 SSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPIL 805 (832)
Q Consensus 728 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L 805 (832)
+..+..+++|+.|++++++.+..+......+..+..+++|+.|+|++|. +..+|..+. ++|+.|+|++|+..
T Consensus 769 ---p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 769 ---PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp ---CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTC
T ss_pred ---chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCC
Confidence 2346789999999999877666666655667788899999999999998 599999865 79999999999863
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=2.6e-24 Score=249.15 Aligned_cols=317 Identities=14% Similarity=0.121 Sum_probs=239.0
Q ss_pred hhcccccEEEecCccccccC---------CCcEEecCCC-cc--ccccccCCC------CceeEEEeCCcCcccccc--c
Q 003300 442 SKLACLRALVIRQSLVIRLS---------SSPFRLHSNL-IR--EIPKNVGKL------IHLRYLNLSELGIERLPK--T 501 (832)
Q Consensus 442 ~~~~~Lr~L~~~~~~~~~~~---------~r~L~L~~n~-l~--~lp~~l~~l------~~L~~L~Ls~~~i~~lp~--~ 501 (832)
.++++|+.|.+.+|.+.... +++|++++|. ++ .+|..++++ ++|++|++++|.++.+|. .
T Consensus 246 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred cccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 37899999999988643221 4899999998 87 489888876 999999999999999999 8
Q ss_pred ccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCC-CccCCceeeCCccCCCCccCccccc
Q 003300 502 LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTS-LRTLDKFVVGGGIDGSNTCRLESLK 580 (832)
Q Consensus 502 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~-L~~L~~~~~~~~~~~~~~~~l~~l~ 580 (832)
++++++|++|++++|...+.+| .++.+++|++|++++|.. ..+|..+.++++ |+.|+ +.+|.+.. .+..+.. .
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~--Ls~N~l~~-lp~~~~~-~ 399 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLS--FAHNKLKY-IPNIFDA-K 399 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE-EECCTTSEEECTTCCEEE--CCSSCCSS-CCSCCCT-T
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc-ccccHhhhhhcccCcEEE--ccCCcCcc-cchhhhh-c
Confidence 9999999999999998766899 899999999999999954 488989999999 99998 77777652 3332222 1
Q ss_pred cCCcCCceeecCCCCCCChhhhhhhccc-------CCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccE
Q 003300 581 NLQLLRECGIEGLGNVSHLDEAERLQLY-------NQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEK 653 (832)
Q Consensus 581 ~L~~L~~l~i~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 653 (832)
.+.+|+.+++....-. ......+. .+.+|+.|++++|.+...+.. .+..+++|+.
T Consensus 400 ~l~~L~~L~Ls~N~l~----~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~--------------~~~~l~~L~~ 461 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIG----SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE--------------LFSTGSPLSS 461 (636)
T ss_dssp CSSCEEEEECCSSCTT----TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH--------------HHHTTCCCSE
T ss_pred ccCccCEEECcCCcCC----CcchhhhcccccccccCCCCCEEECcCCccCcCCHH--------------HHccCCCCCE
Confidence 2335666666653221 11111233 567899999999987654432 1234678999
Q ss_pred EEEEeeCCCCCCchhcc--------ccCCcEEEEeccCCCCcCCCCCCccccce--eccccccceeeCccccCCCCCCCC
Q 003300 654 LGIILYGGNIFPKWLTS--------LTNLRNLYLRSCVKCEHLPPLGKLPLEKL--ELRNLKSVKRVGNEFLGTEESSED 723 (832)
Q Consensus 654 L~l~~~~~~~~p~~l~~--------l~~L~~L~L~~~~~~~~l~~l~~lpL~~l--~l~~l~~L~~~~~~~~~~~~~~~~ 723 (832)
|++++|....+|..+.. +++|+.|+|++|... .+ |.... .+.+++.|++.+|.+.+.
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l------p~~~~~~~l~~L~~L~Ls~N~l~~i------ 528 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL------SDDFRATTLPYLVGIDLSYNSFSKF------ 528 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC------CGGGSTTTCTTCCEEECCSSCCSSC------
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-cc------ChhhhhccCCCcCEEECCCCCCCCc------
Confidence 99999998888876543 239999999999632 33 32222 455666677777777653
Q ss_pred CCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCCh
Q 003300 724 GPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCP 803 (832)
Q Consensus 724 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 803 (832)
+..+..+++|+.|+++++..+..+......+..+..+++|+.|+|++|. ++.+|..+. ++|+.|++++|+
T Consensus 529 -------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 529 -------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp -------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCT
T ss_pred -------ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCC
Confidence 2346789999999998877666666655667778899999999999988 599998865 899999999997
Q ss_pred hh
Q 003300 804 IL 805 (832)
Q Consensus 804 ~L 805 (832)
..
T Consensus 599 l~ 600 (636)
T 4eco_A 599 NI 600 (636)
T ss_dssp TC
T ss_pred Cc
Confidence 53
No 7
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=239.17 Aligned_cols=209 Identities=24% Similarity=0.344 Sum_probs=156.6
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhh-hccC-CeeEEEEeCCCccH--HHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFEG--IRV 254 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~--~~~ 254 (832)
.+.||||+.+++++.++|.... +..++|+|+|+||+||||||.+++++.+. +.+| +.++|++++..... ...
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence 4579999999999999997643 36789999999999999999999997665 7889 58999999775321 222
Q ss_pred HHHHHHHhCCC----CCCCCcHHHHHHHHHHHHcC--CceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHH
Q 003300 255 AKAIIEGLGVS----ASGLSEFESLMKQIQEYIMG--KKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSV 328 (832)
Q Consensus 255 ~~~i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~ 328 (832)
+..++..++.. .....+.+.+...+...+.+ +++||||||+|+. ..++ . ..+|++||||||+..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~---l~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----A---FDSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----T---TCSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----H---hcCCCeEEEECCCcHH
Confidence 33344555421 22345677778888888875 7999999999863 2222 2 2568999999999987
Q ss_pred HHHhCCcCeeeC---CCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHH
Q 003300 329 ALQLGSIDIIPV---KELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLLRSKSTVKEWQRI 405 (832)
Q Consensus 329 ~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~ 405 (832)
+..+. ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||..+|+.++.+. ..|..+
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~ 341 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYY 341 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHH
Confidence 75543 233443 6899999999999988631 222345678999999999999999999998864 367776
Q ss_pred Hhh
Q 003300 406 LES 408 (832)
Q Consensus 406 ~~~ 408 (832)
++.
T Consensus 342 l~~ 344 (591)
T 1z6t_A 342 LKQ 344 (591)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.2e-22 Score=218.02 Aligned_cols=298 Identities=18% Similarity=0.219 Sum_probs=222.3
Q ss_pred HhhcccccEEEecCcccccc-----C--CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEec
Q 003300 441 FSKLACLRALVIRQSLVIRL-----S--SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDI 513 (832)
Q Consensus 441 f~~~~~Lr~L~~~~~~~~~~-----~--~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L 513 (832)
+..+++|+.|.+.++.+... + +++|++++|.++.++. +..+++|++|++++|.++.+| .+.++++|++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 34778899999988764221 1 4899999999999887 999999999999999999886 5899999999999
Q ss_pred cCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCC
Q 003300 514 RRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGL 593 (832)
Q Consensus 514 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~ 593 (832)
++|. +..+|. +..+++|++|++++|.....++ .+..+++|+.|+ +.++.+.. +..+..+++|+.+++.+.
T Consensus 118 ~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~--l~~~~~~~-----~~~~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 118 NEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT--VTESKVKD-----VTPIANLTDLYSLSLNYN 187 (347)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEE--CCSSCCCC-----CGGGGGCTTCSEEECTTS
T ss_pred cCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEE--ecCCCcCC-----chhhccCCCCCEEEccCC
Confidence 9987 555665 8899999999999996666554 488999999998 55665433 222566777777777764
Q ss_pred CCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccC
Q 003300 594 GNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTN 673 (832)
Q Consensus 594 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~ 673 (832)
.- .... .+..+++|+.|++++|.+.... .+..+++|+.|++++|....+|. +..+++
T Consensus 188 ~l-~~~~-----~~~~l~~L~~L~l~~n~l~~~~----------------~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~ 244 (347)
T 4fmz_A 188 QI-EDIS-----PLASLTSLHYFTAYVNQITDIT----------------PVANMTRLNSLKIGNNKITDLSP-LANLSQ 244 (347)
T ss_dssp CC-CCCG-----GGGGCTTCCEEECCSSCCCCCG----------------GGGGCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred cc-cccc-----cccCCCccceeecccCCCCCCc----------------hhhcCCcCCEEEccCCccCCCcc-hhcCCC
Confidence 32 2221 1677889999999988765422 14567899999999999888776 788999
Q ss_pred CcEEEEeccCCCCcCCCCCCcc-ccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeecccccccc
Q 003300 674 LRNLYLRSCVKCEHLPPLGKLP-LEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELE 752 (832)
Q Consensus 674 L~~L~L~~~~~~~~l~~l~~lp-L~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 752 (832)
|++|++++|. +..++.+..++ ++.+++. +|.+... +.+..+++|+.|++++|. +.
T Consensus 245 L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~--------~n~l~~~--------------~~~~~l~~L~~L~L~~n~-l~ 300 (347)
T 4fmz_A 245 LTWLEIGTNQ-ISDINAVKDLTKLKMLNVG--------SNQISDI--------------SVLNNLSQLNSLFLNNNQ-LG 300 (347)
T ss_dssp CCEEECCSSC-CCCCGGGTTCTTCCEEECC--------SSCCCCC--------------GGGGGCTTCSEEECCSSC-CC
T ss_pred CCEEECCCCc-cCCChhHhcCCCcCEEEcc--------CCccCCC--------------hhhcCCCCCCEEECcCCc-CC
Confidence 9999999994 44455555555 5555444 4444432 225788999999998873 33
Q ss_pred ccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChh
Q 003300 753 EWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 753 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
.. .+..+..+++|+.|++++|+ +..++. +..+++|++|++++|+.
T Consensus 301 ~~-----~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 301 NE-----DMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp GG-----GHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred Cc-----ChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 22 23446679999999999998 666665 66799999999999974
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=5.1e-22 Score=230.17 Aligned_cols=105 Identities=24% Similarity=0.226 Sum_probs=53.8
Q ss_pred CcEEecCCCcccc-ccccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++|......|..++++++|++|++++|
T Consensus 59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred cEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC
Confidence 5555555555554 33455555555555555555544 445555555555555555433333344555555555555555
Q ss_pred cCcc-cccCCCCCCCCCccCCceeeCCccC
Q 003300 541 YSLK-YMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 541 ~~~~-~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
.... .+|..++++++|++|+ +.+|.+.
T Consensus 139 ~l~~~~lp~~~~~l~~L~~L~--Ls~n~l~ 166 (606)
T 3vq2_A 139 FIHSCKLPAYFSNLTNLVHVD--LSYNYIQ 166 (606)
T ss_dssp CCCCCCCCGGGGTCTTCCEEE--CCSSCCC
T ss_pred cccceechHhHhhcCCCCEEE--ccCCcce
Confidence 4332 3455555555555555 4444433
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=6.7e-23 Score=243.08 Aligned_cols=66 Identities=15% Similarity=0.039 Sum_probs=53.2
Q ss_pred CccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChh
Q 003300 733 SVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 733 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
.+..+++|+.|+++++ ...+..|..++.+++|+.|+|++|.....+|..+..+++|+.|++++|..
T Consensus 627 ~~~~l~~L~~LdLs~N------~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYN------MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCSSSBCCCEEECCSS------CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred hhhccccccEEECcCC------cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 4556788888877764 23334566788899999999999997778999999999999999999964
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.2e-22 Score=224.52 Aligned_cols=294 Identities=20% Similarity=0.216 Sum_probs=213.7
Q ss_pred CCcEEecCCCcccc-ccccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccCc-ccccccCCceeecC
Q 003300 462 SSPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNG 538 (832)
Q Consensus 462 ~r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~ 538 (832)
.++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|. +..+|. .|.++++|++|+++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECC
Confidence 38999999999887 46788999999999999999866 7789999999999999987 555554 57899999999999
Q ss_pred CccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEE
Q 003300 539 ETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRL 618 (832)
Q Consensus 539 ~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 618 (832)
+|......|..+.++++|+.|+ +.+|.+....+.. +..+.+|+.+++.+.. +.......+..+++|+.|++
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~----l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLE--VGDNDLVYISHRA---FSGLNSLEQLTLEKCN----LTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEE--ECCTTCCEECTTS---STTCTTCCEEEEESCC----CSSCCHHHHTTCTTCCEEEE
T ss_pred CCccccCChhHccccccCCEEE--CCCCccceeChhh---ccCCCCCCEEECCCCc----CcccChhHhcccCCCcEEeC
Confidence 9977777777899999999998 7777655433333 4455566677776542 22223345778899999999
Q ss_pred EEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCC-CCCCchhccccCCcEEEEeccCCCCcCCCCCCcccc
Q 003300 619 EFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGG-NIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLE 697 (832)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~ 697 (832)
+.|.+..... ..+..+++|+.|+++++.. ..+|.......+|++|+|++|. ++.+|. ..
T Consensus 184 ~~n~i~~~~~--------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-----~~ 243 (477)
T 2id5_A 184 RHLNINAIRD--------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPY-----LA 243 (477)
T ss_dssp ESCCCCEECT--------------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCH-----HH
T ss_pred CCCcCcEeCh--------------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCH-----HH
Confidence 9987653222 2566778999999998764 3346666666799999999995 333331 11
Q ss_pred ceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecc
Q 003300 698 KLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRS 777 (832)
Q Consensus 698 ~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 777 (832)
.-.+.+++.|++.+|.+.+... ..+..+++|+.|+++++ .+.. ..+..+..+++|+.|+|++
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~-----~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEG------------SMLHELLRLQEIQLVGG-QLAV-----VEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECT------------TSCTTCTTCCEEECCSS-CCSE-----ECTTTBTTCTTCCEEECCS
T ss_pred hcCccccCeeECCCCcCCccCh------------hhccccccCCEEECCCC-ccce-----ECHHHhcCcccCCEEECCC
Confidence 2223445555555565554322 23568899999988775 3333 2345677899999999999
Q ss_pred cccccCCCCC-CCCCCCcCeEEEcCChh
Q 003300 778 CNKLKALPDY-LLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 778 c~~l~~lp~~-~~~l~~L~~L~l~~c~~ 804 (832)
|. ++.+|.. +..+++|++|++++||.
T Consensus 306 N~-l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 306 NQ-LTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp SC-CSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred Cc-CceeCHhHcCCCcccCEEEccCCCc
Confidence 86 7777764 56789999999999874
No 12
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.5e-21 Score=215.96 Aligned_cols=302 Identities=19% Similarity=0.152 Sum_probs=222.4
Q ss_pred HhhcccccEEEecCcccccc-------CCCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEec
Q 003300 441 FSKLACLRALVIRQSLVIRL-------SSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDI 513 (832)
Q Consensus 441 f~~~~~Lr~L~~~~~~~~~~-------~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L 513 (832)
+.++++|++|.+.++.+... -+++|++++|.++.+| ++.+++|++|++++|.++.+| ++++++|++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 45788999999988765332 1489999999999986 889999999999999999885 889999999999
Q ss_pred cCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCC
Q 003300 514 RRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGL 593 (832)
Q Consensus 514 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~ 593 (832)
++|. +..+| ++.+++|++|++++|... .++ ++++++|+.|+ +.+|...+ .+ .+..+++|+.+++.+.
T Consensus 114 ~~N~-l~~l~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~~L~--l~~n~~~~----~~-~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 114 DTNK-LTKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELD--CHLNKKIT----KL-DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CSSC-CSCCC--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCCEEE--CTTCSCCC----CC-CCTTCTTCCEEECCSS
T ss_pred CCCc-CCeec--CCCCCcCCEEECCCCccc-eec--cccCCcCCEEE--CCCCCccc----cc-ccccCCcCCEEECCCC
Confidence 9987 44565 889999999999999544 343 78899999998 55553222 11 3556667777777654
Q ss_pred CCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccC
Q 003300 594 GNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTN 673 (832)
Q Consensus 594 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~ 673 (832)
. +..+ .+..+++|+.|++++|.+... .+..+++|+.|++++|....+| +..+++
T Consensus 181 ~-l~~l------~l~~l~~L~~L~l~~N~l~~~-----------------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~ 234 (457)
T 3bz5_A 181 K-ITEL------DVSQNKLLNRLNCDTNNITKL-----------------DLNQNIQLTFLDCSSNKLTEID--VTPLTQ 234 (457)
T ss_dssp C-CCCC------CCTTCTTCCEEECCSSCCSCC-----------------CCTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred c-ccee------ccccCCCCCEEECcCCcCCee-----------------ccccCCCCCEEECcCCcccccC--ccccCC
Confidence 2 2221 267788999999999886532 3566789999999999988887 778999
Q ss_pred CcEEEEeccCCCCcCCCCCCcc-ccceecc--ccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeecccccc
Q 003300 674 LRNLYLRSCVKCEHLPPLGKLP-LEKLELR--NLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEE 750 (832)
Q Consensus 674 L~~L~L~~~~~~~~l~~l~~lp-L~~l~l~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 750 (832)
|+.|++++|. +..+| ++.++ ++.+.+. ++..+++.+|.+.+..+ ...+++|+.|++++|..
T Consensus 235 L~~L~l~~N~-l~~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------------~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 235 LTYFDCSVNP-LTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------------AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp CSEEECCSSC-CSCCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------------CTTCTTCCCCCCTTCTT
T ss_pred CCEEEeeCCc-CCCcC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc--------------ccccccCCEEECCCCcc
Confidence 9999999995 44444 45566 6666554 45556666665443321 35789999999999876
Q ss_pred ccccccccc--cccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChh
Q 003300 751 LEEWNYRIT--RKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 751 L~~~~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
+..++.... ..-.+..+++|+.|++++|. ++.++ +..+++|+.|++++|..
T Consensus 299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSCC
T ss_pred cceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCCC
Confidence 665543111 01125567899999998877 77774 77799999999998853
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=9.9e-22 Score=214.24 Aligned_cols=297 Identities=18% Similarity=0.142 Sum_probs=217.8
Q ss_pred hcccccEEEecCcccccc---------CCCcEEecCCCcccccc-ccCCCCceeEEEeCCcCccccc-ccccCCCcccEE
Q 003300 443 KLACLRALVIRQSLVIRL---------SSSPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERLP-KTLCELYNLQKL 511 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~~~~---------~~r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L 511 (832)
.+++++.|.+.++.+... -+++|++++|.++.++. .++.+++|++|++++|.++.+| ..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467889999888764221 14899999999998765 7899999999999999999775 558999999999
Q ss_pred eccCccCccccCcc-cccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceee
Q 003300 512 DIRRCRNLKELPAG-IGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGI 590 (832)
Q Consensus 512 ~L~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i 590 (832)
++++|. +..+|.. |.++++|++|++++|......|..+.++++|+.|+ +.+|.+... .+..+++|+.+++
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~------~~~~l~~L~~L~l 193 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ--LSSNRLTHV------DLSLIPSLFHANV 193 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE--CCSSCCSBC------CGGGCTTCSEEEC
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE--CCCCcCCcc------ccccccccceeec
Confidence 999987 5567765 58999999999999976665566789999999998 667765432 2444556666666
Q ss_pred cCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhcc
Q 003300 591 EGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTS 670 (832)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~ 670 (832)
.+.. +. .+....+|+.|++++|.+...+ ...+.+|+.|++++|..... .++..
T Consensus 194 ~~n~-l~--------~~~~~~~L~~L~l~~n~l~~~~-----------------~~~~~~L~~L~l~~n~l~~~-~~l~~ 246 (390)
T 3o6n_A 194 SYNL-LS--------TLAIPIAVEELDASHNSINVVR-----------------GPVNVELTILKLQHNNLTDT-AWLLN 246 (390)
T ss_dssp CSSC-CS--------EEECCSSCSEEECCSSCCCEEE-----------------CCCCSSCCEEECCSSCCCCC-GGGGG
T ss_pred cccc-cc--------ccCCCCcceEEECCCCeeeecc-----------------ccccccccEEECCCCCCccc-HHHcC
Confidence 5431 11 2344568999999988764321 12347899999999988774 67889
Q ss_pred ccCCcEEEEeccCCCCcCC-CCCCccccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccc
Q 003300 671 LTNLRNLYLRSCVKCEHLP-PLGKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAME 749 (832)
Q Consensus 671 l~~L~~L~L~~~~~~~~l~-~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 749 (832)
+++|++|+|++|......| .++.+ .+++.|++.+|.+.+... ....+++|+.|+++++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~-------------~~~~l~~L~~L~L~~n- 305 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKM-------QRLERLYISNNRLVALNL-------------YGQPIPTLKVLDLSHN- 305 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTC-------SSCCEEECCSSCCCEEEC-------------SSSCCTTCCEEECCSS-
T ss_pred CCCccEEECCCCcCCCcChhHcccc-------ccCCEEECCCCcCcccCc-------------ccCCCCCCCEEECCCC-
Confidence 9999999999996333212 23333 444455555555544321 2357899999999987
Q ss_pred cccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChhh
Q 003300 750 ELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPIL 805 (832)
Q Consensus 750 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L 805 (832)
.+.... ..+..+++|+.|++++|+ +..+| +..+++|+.|++++|+.-
T Consensus 306 ~l~~~~------~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 306 HLLHVE------RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCCCCG------GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred cceecC------ccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCcc
Confidence 454432 235578999999999988 77776 556899999999999753
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=5.7e-22 Score=226.94 Aligned_cols=339 Identities=19% Similarity=0.221 Sum_probs=194.1
Q ss_pred HHhhcccccEEEecCccccccC---------CCcEEecCCCccccccc-cCCCCceeEEEeCCcCccc--ccccccCCCc
Q 003300 440 LFSKLACLRALVIRQSLVIRLS---------SSPFRLHSNLIREIPKN-VGKLIHLRYLNLSELGIER--LPKTLCELYN 507 (832)
Q Consensus 440 ~f~~~~~Lr~L~~~~~~~~~~~---------~r~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~~~i~~--lp~~~~~l~~ 507 (832)
.|.++++|++|.+.++.+.... +++|++++|.++.+|.. ++++++|++|++++|.++. .|..++++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 4667788888888877642221 37888888888877655 8888888888888888873 4667888888
Q ss_pred ccEEeccCccCccccC-cccccccCCceeecCCccCcccccCCCCCCCCCccCCce----------------------ee
Q 003300 508 LQKLDIRRCRNLKELP-AGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKF----------------------VV 564 (832)
Q Consensus 508 L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~----------------------~~ 564 (832)
|++|++++|...+.+| ..+.++++|++|++++|......|..++++++|++|++. +.
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence 8888888877666665 467888888888888887666677777766655555411 22
Q ss_pred CCccCCCCccCc---ccc-------------------------ccCCcCCceeecCCC-----CC--------CChhhhh
Q 003300 565 GGGIDGSNTCRL---ESL-------------------------KNLQLLRECGIEGLG-----NV--------SHLDEAE 603 (832)
Q Consensus 565 ~~~~~~~~~~~l---~~l-------------------------~~L~~L~~l~i~~~~-----~~--------~~~~~~~ 603 (832)
+|.+.+...... ..+ ..+..|..+.+..+. .. .......
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 222221100000 000 001111111111100 00 0000000
Q ss_pred hh------------------cccCCCCCCceEEEEecCCCCchHHHh-hhh--------h-chHHH---hhcCCCCCCcc
Q 003300 604 RL------------------QLYNQQNLLRLRLEFGRVVDGEDEARR-RKK--------E-KDEQL---LKTLQPPLSVE 652 (832)
Q Consensus 604 ~~------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~--------~-~~~~~---~~~l~~~~~L~ 652 (832)
.. ......+|+.|++++|.+...+..... ... . ..... ...+..+++|+
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 00 001113344444444444333322100 000 0 00111 22355667888
Q ss_pred EEEEEeeCCCCCC---chhccccCCcEEEEeccCCCCcCCC-CCCcc-ccceeccc-------------cccceeeCccc
Q 003300 653 KLGIILYGGNIFP---KWLTSLTNLRNLYLRSCVKCEHLPP-LGKLP-LEKLELRN-------------LKSVKRVGNEF 714 (832)
Q Consensus 653 ~L~l~~~~~~~~p---~~l~~l~~L~~L~L~~~~~~~~l~~-l~~lp-L~~l~l~~-------------l~~L~~~~~~~ 714 (832)
.|++++|....+| ..+..+++|++|++++|. ++.+|. ++.++ |+.+++.+ ++.|++.+|.+
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCC
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCCh
Confidence 8888888776654 346778888888888884 334443 33344 55554433 22333333433
Q ss_pred cCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCC-CCCCCCC
Q 003300 715 LGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTT 793 (832)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~ 793 (832)
.+. ...+++|++|+++++ .++.++. ...+++|+.|++++|. ++.+|. .+..+++
T Consensus 444 ~~~----------------~~~l~~L~~L~Ls~N-~l~~ip~-------~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 444 DSF----------------SLFLPRLQELYISRN-KLKTLPD-------ASLFPVLLVMKISRNQ-LKSVPDGIFDRLTS 498 (549)
T ss_dssp SCC----------------CCCCTTCCEEECCSS-CCSSCCC-------GGGCTTCCEEECCSSC-CCCCCTTGGGGCTT
T ss_pred hhh----------------cccCChhcEEECCCC-ccCcCCC-------cccCccCCEEecCCCc-cCCcCHHHHhcCcc
Confidence 321 247889999988886 4553322 3468999999999987 666655 4778999
Q ss_pred cCeEEEcCChh
Q 003300 794 LQDLTIWKCPI 804 (832)
Q Consensus 794 L~~L~l~~c~~ 804 (832)
|+.|++++||-
T Consensus 499 L~~L~l~~N~~ 509 (549)
T 2z81_A 499 LQKIWLHTNPW 509 (549)
T ss_dssp CCEEECCSSCB
T ss_pred cCEEEecCCCc
Confidence 99999999873
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=4.6e-22 Score=233.82 Aligned_cols=319 Identities=13% Similarity=0.103 Sum_probs=224.9
Q ss_pred HHhhcccccEEEecCccccc--------------------------cC--CCcEEecCCC-ccccccccCCCCceeEEEe
Q 003300 440 LFSKLACLRALVIRQSLVIR--------------------------LS--SSPFRLHSNL-IREIPKNVGKLIHLRYLNL 490 (832)
Q Consensus 440 ~f~~~~~Lr~L~~~~~~~~~--------------------------~~--~r~L~L~~n~-l~~lp~~l~~l~~L~~L~L 490 (832)
.|.++++|+.|.+.+|.+.. .+ +++|+|++|. ...+|..++++++|++|+|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 37789999999998876544 11 4788998887 4568888999999999999
Q ss_pred CCcC-ccc--ccccccCCC-------cccEEeccCccCccccCc--ccccccCCceeecCCccCcccccCCCCCCCCCcc
Q 003300 491 SELG-IER--LPKTLCELY-------NLQKLDIRRCRNLKELPA--GIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRT 558 (832)
Q Consensus 491 s~~~-i~~--lp~~~~~l~-------~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~ 558 (832)
++|. ++. +|..++++. +|++|++++|... .+|. .++++++|++|++++|... .+| .++++++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence 9997 774 787666655 8999999998754 8888 8889999999999988654 788 7888999998
Q ss_pred CCceeeCCccCCCCccCccccccCCc-CCceeecCCCCCCChhhhhhhcccCC--CCCCceEEEEecCCCCchHHHhhhh
Q 003300 559 LDKFVVGGGIDGSNTCRLESLKNLQL-LRECGIEGLGNVSHLDEAERLQLYNQ--QNLLRLRLEFGRVVDGEDEARRRKK 635 (832)
Q Consensus 559 L~~~~~~~~~~~~~~~~l~~l~~L~~-L~~l~i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~ 635 (832)
|+ +.+|.+. ..+.. +..+.+ |+.+++.+..- ..++ ..+..+ ++|+.|++++|.+....+.
T Consensus 600 L~--Ls~N~l~-~lp~~---l~~l~~~L~~L~Ls~N~L-~~lp----~~~~~~~~~~L~~L~Ls~N~l~g~ip~------ 662 (876)
T 4ecn_A 600 LK--LDYNQIE-EIPED---FCAFTDQVEGLGFSHNKL-KYIP----NIFNAKSVYVMGSVDFSYNKIGSEGRN------ 662 (876)
T ss_dssp EE--CCSSCCS-CCCTT---SCEECTTCCEEECCSSCC-CSCC----SCCCTTCSSCEEEEECCSSCTTTTSSS------
T ss_pred EE--CcCCccc-cchHH---HhhccccCCEEECcCCCC-CcCc----hhhhccccCCCCEEECcCCcCCCcccc------
Confidence 88 6677655 23333 444555 66666665431 1111 123333 3488999988876532211
Q ss_pred hchHHHhhcC--CCCCCccEEEEEeeCCCCCCchhc-cccCCcEEEEeccCCCCcCCCCCCccc--cceeccccccceee
Q 003300 636 EKDEQLLKTL--QPPLSVEKLGIILYGGNIFPKWLT-SLTNLRNLYLRSCVKCEHLPPLGKLPL--EKLELRNLKSVKRV 710 (832)
Q Consensus 636 ~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~p~~l~-~l~~L~~L~L~~~~~~~~l~~l~~lpL--~~l~l~~l~~L~~~ 710 (832)
+...+ ....+|+.|++++|....+|.++. .+++|+.|+|++|.. ..+|....-.. ..-.+.++..|++.
T Consensus 663 -----l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 663 -----ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp -----CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred -----chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECC
Confidence 00111 134589999999999999998876 789999999999953 34443110000 01123366777777
Q ss_pred CccccCCCCCCCCCCCCCCCCCCcc--CCcccceeeccccccccccccccccccccCCCCccceeeecc------ccccc
Q 003300 711 GNEFLGTEESSEDGPSSSSSSPSVI--AFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRS------CNKLK 782 (832)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~ 782 (832)
+|.+... +..+. .+++|+.|+++++ .+..+ +..+..+++|+.|+|++ |....
T Consensus 737 ~N~L~~l-------------p~~l~~~~l~~L~~L~Ls~N-~L~~l------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 737 FNKLTSL-------------SDDFRATTLPYLSNMDVSYN-CFSSF------PTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp SSCCCCC-------------CGGGSTTTCTTCCEEECCSS-CCSSC------CCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred CCCCccc-------------hHHhhhccCCCcCEEEeCCC-CCCcc------chhhhcCCCCCEEECCCCCCcccccccc
Confidence 7777643 22344 7899999999886 44432 34566899999999977 55567
Q ss_pred CCCCCCCCCCCcCeEEEcCChh
Q 003300 783 ALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 783 ~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
.+|..+..+++|+.|++++|..
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC
T ss_pred cChHHHhcCCCCCEEECCCCCC
Confidence 7898999999999999999976
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.5e-21 Score=217.84 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=41.7
Q ss_pred ccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChh
Q 003300 734 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 734 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
+..+++|+.|+++++ .+... ..+..+++|+.|++++|. +..++. +..+++|+.|++++|+.
T Consensus 327 ~~~l~~L~~L~l~~n-~l~~~-------~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNN-KVSDV-------SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCC-------GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEEE
T ss_pred hccCccCCEeECCCC-ccCCc-------hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCcc
Confidence 456777777777665 33332 245678888888888877 444444 66788888888888864
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=2e-22 Score=233.65 Aligned_cols=118 Identities=21% Similarity=0.192 Sum_probs=89.3
Q ss_pred HHHhhcccccEEEecCcccccc----C-----CCcEEecCCCcccc-ccccCCCCceeEEEeCCcCccccc-ccccCCCc
Q 003300 439 KLFSKLACLRALVIRQSLVIRL----S-----SSPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIERLP-KTLCELYN 507 (832)
Q Consensus 439 ~~f~~~~~Lr~L~~~~~~~~~~----~-----~r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~ 507 (832)
..|.++++|++|.+.++.+... + +++|++++|.++.+ |..|+++++|++|++++|.+..+| ..++++++
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 3567888899998888764222 1 48889998888887 778888999999999999888765 67888889
Q ss_pred ccEEeccCccCcc-ccCcccccccCCceeecCCccCcccccCCCCCCCCC
Q 003300 508 LQKLDIRRCRNLK-ELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSL 556 (832)
Q Consensus 508 L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L 556 (832)
|++|++++|.... .+|..++++++|++|++++|......|..++.+++|
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 9999998887554 578888888899988888886555444445444433
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.4e-21 Score=224.97 Aligned_cols=296 Identities=18% Similarity=0.154 Sum_probs=218.5
Q ss_pred hcccccEEEecCcccccc---------CCCcEEecCCCcccccc-ccCCCCceeEEEeCCcCcccccc-cccCCCcccEE
Q 003300 443 KLACLRALVIRQSLVIRL---------SSSPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKL 511 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~~~~---------~~r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L 511 (832)
.+.+++.|.+.++.+... -+++|+|++|.++.++. .|+.+++|++|+|++|.++.+|. .|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467889999888764222 14899999999998765 89999999999999999997765 57999999999
Q ss_pred eccCccCccccCcc-cccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceee
Q 003300 512 DIRRCRNLKELPAG-IGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGI 590 (832)
Q Consensus 512 ~L~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i 590 (832)
+|++|. +..+|.. |+++++|++|++++|......|..++++++|+.|+ +.+|.+... .+..+..|..+++
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~~~------~~~~l~~L~~L~l 199 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ--LSSNRLTHV------DLSLIPSLFHANV 199 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE--CTTSCCSBC------CGGGCTTCSEEEC
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE--CcCCCCCCc------Chhhhhhhhhhhc
Confidence 999987 5566655 68999999999999977666667799999999998 667765442 2344555666666
Q ss_pred cCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhcc
Q 003300 591 EGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTS 670 (832)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~ 670 (832)
.+.. +. .+....+|+.|++++|.+...+. ..+++|+.|++++|.... +.++..
T Consensus 200 ~~n~-l~--------~l~~~~~L~~L~ls~n~l~~~~~-----------------~~~~~L~~L~L~~n~l~~-~~~l~~ 252 (597)
T 3oja_B 200 SYNL-LS--------TLAIPIAVEELDASHNSINVVRG-----------------PVNVELTILKLQHNNLTD-TAWLLN 252 (597)
T ss_dssp CSSC-CS--------EEECCTTCSEEECCSSCCCEEEC-----------------SCCSCCCEEECCSSCCCC-CGGGGG
T ss_pred ccCc-cc--------cccCCchhheeeccCCccccccc-----------------ccCCCCCEEECCCCCCCC-Chhhcc
Confidence 5431 11 23455689999999887643221 224689999999998876 578899
Q ss_pred ccCCcEEEEeccCCCCcCC-CCCCccccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccc
Q 003300 671 LTNLRNLYLRSCVKCEHLP-PLGKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAME 749 (832)
Q Consensus 671 l~~L~~L~L~~~~~~~~l~-~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 749 (832)
+++|+.|+|++|......| .++.+ .++..|++.+|.+.+.+ ..+..+|+|+.|+++++
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l-------~~L~~L~Ls~N~l~~l~-------------~~~~~l~~L~~L~Ls~N- 311 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKM-------QRLERLYISNNRLVALN-------------LYGQPIPTLKVLDLSHN- 311 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTC-------SSCCEEECTTSCCCEEE-------------CSSSCCTTCCEEECCSS-
T ss_pred CCCCCEEECCCCccCCCCHHHhcCc-------cCCCEEECCCCCCCCCC-------------cccccCCCCcEEECCCC-
Confidence 9999999999996433222 23444 44445555556555432 12357899999999886
Q ss_pred cccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChh
Q 003300 750 ELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 750 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
.+..+ +..+..+++|+.|+|++|+ +..+| +..+++|+.|++++||.
T Consensus 312 ~l~~i------~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 312 HLLHV------ERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCCCC------GGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCCcc------CcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 44433 2345678999999999988 67776 55689999999999985
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.5e-21 Score=226.14 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=59.0
Q ss_pred HhhcccccEEEecCcccccc----C-----CCcEEecCCCcccc-ccccCCCCceeEEEeCCcCcccc-cccccCCCccc
Q 003300 441 FSKLACLRALVIRQSLVIRL----S-----SSPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQ 509 (832)
Q Consensus 441 f~~~~~Lr~L~~~~~~~~~~----~-----~r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~ 509 (832)
|.++++|++|.+.+|.+... + +++|++++|.+..+ |..++++++|++|++++|.++.+ |..++++++|+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 44555566665555542111 1 25556665555543 44555556666666666655544 44455555666
Q ss_pred EEeccCccCccc-cCcccccccCCceeecCCccCcccccCCCCCCCCCc
Q 003300 510 KLDIRRCRNLKE-LPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLR 557 (832)
Q Consensus 510 ~L~L~~~~~~~~-lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~ 557 (832)
+|++++|..... .|. +..+++|++|++++|......|..++.+++|+
T Consensus 133 ~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp EEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred EEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 666655543321 122 33355566666655544333344455555555
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=9.2e-22 Score=223.44 Aligned_cols=147 Identities=19% Similarity=0.155 Sum_probs=78.4
Q ss_pred CCCCCccEEEEEeeCCCC-CCchhccccCCcEEEEeccCCCCcCCCCCCccccceeccccccceeeCccccC-CCCCCCC
Q 003300 646 QPPLSVEKLGIILYGGNI-FPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLG-TEESSED 723 (832)
Q Consensus 646 ~~~~~L~~L~l~~~~~~~-~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~-~~~~~~~ 723 (832)
..+++|+.|++++|.... .|.++..+++|++|+|++|.... ++ .+|...-.+.+++.|++.+|.+.+ .+.....
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~---~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LS---KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB-HH---HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc-cc---cchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 355677777777776654 46666777777777777774221 11 011011122233333333343333 1110000
Q ss_pred CC--------CCCCCC-CCccCC-cccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCC-CCCCC
Q 003300 724 GP--------SSSSSS-PSVIAF-PKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDY-LLQTT 792 (832)
Q Consensus 724 ~~--------~~~~~~-~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~ 792 (832)
.. ...... .....+ ++|+.|+++++ .++.+ +..+..+++|+.|++++|. ++.+|.. +..++
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~i------p~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSI------PKQVVKLEALQELNVASNQ-LKSVPDGIFDRLT 468 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCC------CGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-ccccc------chhhhcCCCCCEEECCCCc-CCccCHHHhccCC
Confidence 00 000000 000122 56777766665 33322 2344578899999998886 7788886 77789
Q ss_pred CcCeEEEcCChh
Q 003300 793 TLQDLTIWKCPI 804 (832)
Q Consensus 793 ~L~~L~l~~c~~ 804 (832)
+|++|++++||.
T Consensus 469 ~L~~L~l~~N~~ 480 (520)
T 2z7x_B 469 SLQKIWLHTNPW 480 (520)
T ss_dssp TCCEEECCSSCB
T ss_pred cccEEECcCCCC
Confidence 999999998874
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=6.5e-22 Score=232.52 Aligned_cols=137 Identities=16% Similarity=0.184 Sum_probs=88.8
Q ss_pred HHhhcccccEEEecCccccccC---------CCcEEecCCCcccccc-ccCCCCceeEEEeCCcCccccc-ccccCCCcc
Q 003300 440 LFSKLACLRALVIRQSLVIRLS---------SSPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERLP-KTLCELYNL 508 (832)
Q Consensus 440 ~f~~~~~Lr~L~~~~~~~~~~~---------~r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L 508 (832)
.|.++++|++|.+.++.+.... +++|++++|.++.+|. .|+++++|++|++++|.+..+| ..|+++++|
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 4667777777777776543221 3777777777777776 4777777888888777777665 457777778
Q ss_pred cEEeccCccCccccCcccccccCCceeecCCccCcccccCCC--CCCCCCccCCceeeCCccCCCCccCccc
Q 003300 509 QKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGI--SKLTSLRTLDKFVVGGGIDGSNTCRLES 578 (832)
Q Consensus 509 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l--~~L~~L~~L~~~~~~~~~~~~~~~~l~~ 578 (832)
++|++++|......|..++++++|++|++++|......|..+ ..+++|+.|+ +.+|.+.+..+..+..
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~--L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE--LSSNQIKEFSPGCFHA 193 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE--CTTCCCCCBCTTGGGG
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE--CCCCcccccChhhhhh
Confidence 888877776555556667777777777777775443333322 2456777776 5555554433333333
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=3.5e-21 Score=223.14 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=83.0
Q ss_pred CCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCC-CCCCcc-ccceecccc-----------------c
Q 003300 645 LQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLELRNL-----------------K 705 (832)
Q Consensus 645 l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~lp-L~~l~l~~l-----------------~ 705 (832)
+..+++|+.|++++|....+|.++..+++|++|++++|......| .++.++ |+.+++.++ +
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 455677788888877777777777777788888887775332211 233333 443333322 1
Q ss_pred cceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCC
Q 003300 706 SVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALP 785 (832)
Q Consensus 706 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 785 (832)
.|++.+|.+.+.. ..+..+..+++|+.|+++++. +.. ..+..+..+++|+.|++++|......|
T Consensus 354 ~L~l~~n~l~~~~----------~~~~~~~~l~~L~~L~l~~n~-l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 354 ELDLSHDDIETSD----------CCNLQLRNLSHLQSLNLSYNE-PLS-----LKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp EEECCSSCCCEEE----------ESTTTTTTCTTCCEEECCSCS-CEE-----ECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred EEECCCCcccccc----------CcchhcccCCCCCEEECCCCc-CCc-----CCHHHhcCCccCCeEECCCCcCCCccc
Confidence 2222222222110 001234566777777666542 222 233456678888888888887444444
Q ss_pred CC-CCCCCCcCeEEEcCChh
Q 003300 786 DY-LLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 786 ~~-~~~l~~L~~L~l~~c~~ 804 (832)
.. +..+++|++|++++|..
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCC
T ss_pred chhhhCcccCCEEECCCCcc
Confidence 43 66788899999888854
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=5e-22 Score=230.00 Aligned_cols=316 Identities=13% Similarity=0.117 Sum_probs=222.0
Q ss_pred HHhhcccccEEEecCccccc--------------------------cC--CCcEEecCCCcc-ccccccCCCCceeEEEe
Q 003300 440 LFSKLACLRALVIRQSLVIR--------------------------LS--SSPFRLHSNLIR-EIPKNVGKLIHLRYLNL 490 (832)
Q Consensus 440 ~f~~~~~Lr~L~~~~~~~~~--------------------------~~--~r~L~L~~n~l~-~lp~~l~~l~~L~~L~L 490 (832)
.|.++++|++|.+.++.+.. .. +++|++++|.+. .+|..++++++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 36788999999988876544 11 378888888754 57888888888888888
Q ss_pred CCcC-cc--cccccccCC------CcccEEeccCccCccccCc--ccccccCCceeecCCccCcccccCCCCCCCCCccC
Q 003300 491 SELG-IE--RLPKTLCEL------YNLQKLDIRRCRNLKELPA--GIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTL 559 (832)
Q Consensus 491 s~~~-i~--~lp~~~~~l------~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L 559 (832)
++|. ++ .+|..++++ ++|++|++++|... .+|. .++++++|++|++++|.....+| .++++++|+.|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 8887 77 478877776 88888888887744 7887 78888888888888886655788 78888888888
Q ss_pred CceeeCCccCCCCccCccccccCCc-CCceeecCCCCCCChhhhhhhcccC--CCCCCceEEEEecCCCCchHHHhhhhh
Q 003300 560 DKFVVGGGIDGSNTCRLESLKNLQL-LRECGIEGLGNVSHLDEAERLQLYN--QQNLLRLRLEFGRVVDGEDEARRRKKE 636 (832)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~l~~L~~-L~~l~i~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~ 636 (832)
+ +.+|.+. ..+. .+..+.+ |+.+++.+..-. .++ ..+.. +++|+.|++++|.+....+.
T Consensus 359 ~--L~~N~l~-~lp~---~l~~l~~~L~~L~Ls~N~l~-~lp----~~~~~~~l~~L~~L~Ls~N~l~~~~p~------- 420 (636)
T 4eco_A 359 N--LAYNQIT-EIPA---NFCGFTEQVENLSFAHNKLK-YIP----NIFDAKSVSVMSAIDFSYNEIGSVDGK------- 420 (636)
T ss_dssp E--CCSSEEE-ECCT---TSEEECTTCCEEECCSSCCS-SCC----SCCCTTCSSCEEEEECCSSCTTTTTTC-------
T ss_pred E--CCCCccc-cccH---hhhhhcccCcEEEccCCcCc-ccc----hhhhhcccCccCEEECcCCcCCCcchh-------
Confidence 7 6666644 1222 3444555 666666553311 111 12333 34788888888876543221
Q ss_pred chHHHhhcCC-------CCCCccEEEEEeeCCCCCCchhc-cccCCcEEEEeccCCCCcCCCCCCcc-cc--ceeccccc
Q 003300 637 KDEQLLKTLQ-------PPLSVEKLGIILYGGNIFPKWLT-SLTNLRNLYLRSCVKCEHLPPLGKLP-LE--KLELRNLK 705 (832)
Q Consensus 637 ~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~p~~l~-~l~~L~~L~L~~~~~~~~l~~l~~lp-L~--~l~l~~l~ 705 (832)
.+. ...+|+.|++++|....+|..+. .+++|++|+|++|... .+|.-. +. .. .-.+.+++
T Consensus 421 -------~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 421 -------NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNS-LKDENENFKNTYLLT 491 (636)
T ss_dssp -------SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSS-SEETTEECTTGGGCC
T ss_pred -------hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHH-hccccccccccCCcc
Confidence 233 45689999999999888887755 5899999999999633 444211 11 00 01123677
Q ss_pred cceeeCccccCCCCCCCCCCCCCCCCCCcc--CCcccceeeccccccccccccccccccccCCCCccceeeec------c
Q 003300 706 SVKRVGNEFLGTEESSEDGPSSSSSSPSVI--AFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVR------S 777 (832)
Q Consensus 706 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~------~ 777 (832)
.|++.+|.+...+ ..+. .+++|+.|+++++ .++.+ +..+..+++|+.|+++ +
T Consensus 492 ~L~Ls~N~l~~lp-------------~~~~~~~l~~L~~L~Ls~N-~l~~i------p~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 492 SIDLRFNKLTKLS-------------DDFRATTLPYLVGIDLSYN-SFSKF------PTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp EEECCSSCCCBCC-------------GGGSTTTCTTCCEEECCSS-CCSSC------CCGGGGCSSCCEEECCSCBCTTC
T ss_pred EEECcCCcCCccC-------------hhhhhccCCCcCEEECCCC-CCCCc------ChhhhcCCCCCEEECCCCccccc
Confidence 7788888776432 2344 8899999998886 34432 3456689999999995 5
Q ss_pred cccccCCCCCCCCCCCcCeEEEcCChh
Q 003300 778 CNKLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 778 c~~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
|.....+|..+..+++|++|++++|..
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC
Confidence 666778999999999999999999976
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.9e-21 Score=208.60 Aligned_cols=277 Identities=20% Similarity=0.253 Sum_probs=212.5
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
.++|++++|.+..+|. +..+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+..+++|++|++++|.
T Consensus 46 L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNEDN 121 (347)
T ss_dssp CSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTSC
T ss_pred ccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCCc
Confidence 4899999999999875 8899999999999999999887 9999999999999986 55565 59999999999999995
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
. ..+|. +..+++|+.|+ +.++.. ...+..+..+++|+.+.+.+.... ... .+..+++|+.|++++|
T Consensus 122 i-~~~~~-~~~l~~L~~L~--l~~n~~----~~~~~~~~~l~~L~~L~l~~~~~~-~~~-----~~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 122 I-SDISP-LANLTKMYSLN--LGANHN----LSDLSPLSNMTGLNYLTVTESKVK-DVT-----PIANLTDLYSLSLNYN 187 (347)
T ss_dssp C-CCCGG-GTTCTTCCEEE--CTTCTT----CCCCGGGTTCTTCCEEECCSSCCC-CCG-----GGGGCTTCSEEECTTS
T ss_pred c-cCchh-hccCCceeEEE--CCCCCC----cccccchhhCCCCcEEEecCCCcC-Cch-----hhccCCCCCEEEccCC
Confidence 4 44554 88999999998 555542 223444677777888888765422 211 2678899999999998
Q ss_pred cCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCcc-cccee
Q 003300 622 RVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLE 700 (832)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lp-L~~l~ 700 (832)
.+.... .+..+++|+.|+++++....++. +..+++|++|++++|. +..++.+..++ ++.++
T Consensus 188 ~l~~~~----------------~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~ 249 (347)
T 4fmz_A 188 QIEDIS----------------PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLE 249 (347)
T ss_dssp CCCCCG----------------GGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEE
T ss_pred cccccc----------------cccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEE
Confidence 765432 14567899999999998877665 7889999999999995 44444455555 55554
Q ss_pred ccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeeccccc
Q 003300 701 LRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNK 780 (832)
Q Consensus 701 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 780 (832)
+. +|.+... +.+..+++|+.|+++++ .+..+ ..+..+++|+.|++++|..
T Consensus 250 l~--------~n~l~~~--------------~~~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 250 IG--------TNQISDI--------------NAVKDLTKLKMLNVGSN-QISDI-------SVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp CC--------SSCCCCC--------------GGGTTCTTCCEEECCSS-CCCCC-------GGGGGCTTCSEEECCSSCC
T ss_pred CC--------CCccCCC--------------hhHhcCCCcCEEEccCC-ccCCC-------hhhcCCCCCCEEECcCCcC
Confidence 44 4444432 22578999999999887 45443 2356899999999999985
Q ss_pred ccCCCCCCCCCCCcCeEEEcCChh
Q 003300 781 LKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 781 l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
....|..+..+++|++|++++|+.
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSSC
T ss_pred CCcChhHhhccccCCEEEccCCcc
Confidence 444555677799999999999974
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1e-21 Score=219.15 Aligned_cols=331 Identities=15% Similarity=0.124 Sum_probs=180.2
Q ss_pred ccccEEEecCcccccc----C-----CCcEEecCCCcc-cc-ccccCCCCceeEEEeCCcCcccc-cccccCCCcccEEe
Q 003300 445 ACLRALVIRQSLVIRL----S-----SSPFRLHSNLIR-EI-PKNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLD 512 (832)
Q Consensus 445 ~~Lr~L~~~~~~~~~~----~-----~r~L~L~~n~l~-~l-p~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~ 512 (832)
++|++|.+.++.+... + +++|++++|.+. .+ +..|.++++|++|+|++|.++.+ |..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 3556666665543221 0 256666666554 33 34455666666666666665543 55566666666666
Q ss_pred ccCccCccccCcc--cccccCCceeecCCccCcccccCC-CCCCCCCccCCceeeCCccCCCCccCccccccCCcCCcee
Q 003300 513 IRRCRNLKELPAG--IGKLKNMRSLLNGETYSLKYMPVG-ISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECG 589 (832)
Q Consensus 513 L~~~~~~~~lp~~--l~~l~~L~~L~l~~~~~~~~~p~~-l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~ 589 (832)
+++|......|.. +..+++|++|++++|......|.. +.++++|+.|+ +.+|.+.+..+..+..+.. .+|..++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~l~~l~~-~~L~~L~ 186 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD--LTFNKVKSICEEDLLNFQG-KHFTLLR 186 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE--CTTCCBSCCCTTTSGGGTT-CEEEEEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe--CCCCcccccChhhhhcccc-ccccccc
Confidence 6665544333333 556666666666666444433443 55566666665 4455444333333333211 1222333
Q ss_pred ecCCCC--CCC--hhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhh--hchH--H--------------Hhh----
Q 003300 590 IEGLGN--VSH--LDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKK--EKDE--Q--------------LLK---- 643 (832)
Q Consensus 590 i~~~~~--~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~--~--------------~~~---- 643 (832)
+..... +.. ........+..+++|+.|++++|.+....+....... .... . .+.
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 322110 000 0001111233456788888888765422111000000 0000 0 000
Q ss_pred -cC--CCCCCccEEEEEeeCCCCC-CchhccccCCcEEEEeccCCCCcCC-CCCCccccceeccccccceeeCccccCCC
Q 003300 644 -TL--QPPLSVEKLGIILYGGNIF-PKWLTSLTNLRNLYLRSCVKCEHLP-PLGKLPLEKLELRNLKSVKRVGNEFLGTE 718 (832)
Q Consensus 644 -~l--~~~~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~lpL~~l~l~~l~~L~~~~~~~~~~~ 718 (832)
.+ ...++|+.|++++|....+ |.++..+++|++|+|++|......| .++.++ +++.|++.+|.+.+..
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-------HLLKLNLSQNFLGSID 339 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-------TCCEEECCSSCCCEEC
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-------cCCEEECCCCccCCcC
Confidence 00 0125788888888877554 6678888999999999886433222 344444 4444444555554331
Q ss_pred CCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCC-CCCCCCcCeE
Q 003300 719 ESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDY-LLQTTTLQDL 797 (832)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L 797 (832)
+..+..+++|+.|+++++ .+.. ..+..+..+++|+.|++++|. ++.+|.. +..+++|++|
T Consensus 340 ------------~~~~~~l~~L~~L~Ls~N-~l~~-----~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 340 ------------SRMFENLDKLEVLDLSYN-HIRA-----LGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp ------------GGGGTTCTTCCEEECCSS-CCCE-----ECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred ------------hhHhcCcccCCEEECCCC-cccc-----cChhhccccccccEEECCCCc-cccCCHhHhccCCcccEE
Confidence 123567899999988886 3332 234567789999999999987 7777764 5679999999
Q ss_pred EEcCChh
Q 003300 798 TIWKCPI 804 (832)
Q Consensus 798 ~l~~c~~ 804 (832)
++++|+.
T Consensus 401 ~l~~N~l 407 (455)
T 3v47_A 401 WLHTNPW 407 (455)
T ss_dssp ECCSSCB
T ss_pred EccCCCc
Confidence 9999864
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=5.2e-21 Score=219.11 Aligned_cols=143 Identities=19% Similarity=0.163 Sum_probs=84.8
Q ss_pred CCCCCccEEEEEeeCCCC-CCchhccccCCcEEEEeccCCCCcCC----CCCCccccceeccccccceeeCccccC-CCC
Q 003300 646 QPPLSVEKLGIILYGGNI-FPKWLTSLTNLRNLYLRSCVKCEHLP----PLGKLPLEKLELRNLKSVKRVGNEFLG-TEE 719 (832)
Q Consensus 646 ~~~~~L~~L~l~~~~~~~-~p~~l~~l~~L~~L~L~~~~~~~~l~----~l~~lpL~~l~l~~l~~L~~~~~~~~~-~~~ 719 (832)
..+++|+.|++++|.... .|.++..+++|++|+|++|. ++.++ .++.++ +++.|++.+|.+.+ .+.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~-------~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMS-------SLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCT-------TCCEEECTTSCCBSCCSS
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCC-------CCCEEECCCCcCCCccCh
Confidence 456789999999888765 57788889999999999885 33332 133333 33334444444443 111
Q ss_pred CCCCCC--------CCCCC-CCCccCC-cccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCC-C
Q 003300 720 SSEDGP--------SSSSS-SPSVIAF-PKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDY-L 788 (832)
Q Consensus 720 ~~~~~~--------~~~~~-~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~ 788 (832)
...... ..... ......+ ++|+.|+++++ .++.+ +..+..+++|+.|++++|. ++.+|.. +
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~i------p~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 493 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSI------PKDVTHLQALQELNVASNQ-LKSVPDGVF 493 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCC------CTTTTSSCCCSEEECCSSC-CCCCCTTST
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCccc------ChhhcCCCCCCEEECCCCC-CCCCCHHHH
Confidence 000000 00000 0001122 46777766665 34432 2334478888999998876 7788876 7
Q ss_pred CCCCCcCeEEEcCChh
Q 003300 789 LQTTTLQDLTIWKCPI 804 (832)
Q Consensus 789 ~~l~~L~~L~l~~c~~ 804 (832)
..+++|+.|++++||-
T Consensus 494 ~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTCTTCCCEECCSCCB
T ss_pred hcCCCCCEEEecCCCc
Confidence 7788899999888864
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=1.8e-20 Score=224.61 Aligned_cols=80 Identities=24% Similarity=0.262 Sum_probs=42.2
Q ss_pred CcEEecCCCcccc-ccccCCCCceeEEEeCCcCccc-cccc--ccCCCcccEEeccCccCccccC-cccccccCCceeec
Q 003300 463 SPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIER-LPKT--LCELYNLQKLDIRRCRNLKELP-AGIGKLKNMRSLLN 537 (832)
Q Consensus 463 r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~-lp~~--~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l 537 (832)
++|+|++|.+..+ |..|+++++|++|+|++|.+.. +|.. |.++++|++|++++|......| ..|+++++|++|++
T Consensus 76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 5555555555544 4555555555555555555552 3333 5555555555555554333222 34555555555555
Q ss_pred CCccC
Q 003300 538 GETYS 542 (832)
Q Consensus 538 ~~~~~ 542 (832)
++|..
T Consensus 156 s~N~i 160 (844)
T 3j0a_A 156 SSNQI 160 (844)
T ss_dssp ESSCC
T ss_pred CCCcC
Confidence 55543
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.8e-21 Score=203.37 Aligned_cols=228 Identities=24% Similarity=0.324 Sum_probs=169.5
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
+.|++++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..++++++|++|++++|..
T Consensus 84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETT
T ss_pred eEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCC
Confidence 5678888999999999999999999999999999999999999999999999987 448899999999999999999877
Q ss_pred cccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEec
Q 003300 543 LKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGR 622 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 622 (832)
.+.+|..+.. +. +. ..+.++++|+.|++++|.
T Consensus 163 ~~~~p~~~~~------~~-----------------------------~~-------------~~~~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 163 LTELPEPLAS------TD-----------------------------AS-------------GEHQGLVNLQSLRLEWTG 194 (328)
T ss_dssp CCCCCSCSEE------EC------------------------------C-------------CCEEESTTCCEEEEEEEC
T ss_pred ccccChhHhh------cc-----------------------------ch-------------hhhccCCCCCEEECcCCC
Confidence 7666654322 00 00 013445667777777776
Q ss_pred CCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccceecc
Q 003300 623 VVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLELR 702 (832)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~ 702 (832)
+...+ ..+..+++|+.|++++|....+|..+..+++|++|+|++|...+.+|
T Consensus 195 l~~lp---------------~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p------------- 246 (328)
T 4fcg_A 195 IRSLP---------------ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP------------- 246 (328)
T ss_dssp CCCCC---------------GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC-------------
T ss_pred cCcch---------------HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH-------------
Confidence 54221 12334456666666666666666666667777777777665332221
Q ss_pred ccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeeccccccc
Q 003300 703 NLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLK 782 (832)
Q Consensus 703 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 782 (832)
..+..+++|+.|++++|..+..+ +..+..+++|+.|+|++|+.++
T Consensus 247 -----------------------------~~~~~l~~L~~L~L~~n~~~~~~------p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 247 -----------------------------PIFGGRAPLKRLILKDCSNLLTL------PLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp -----------------------------CCTTCCCCCCEEECTTCTTCCBC------CTTGGGCTTCCEEECTTCTTCC
T ss_pred -----------------------------HHhcCCCCCCEEECCCCCchhhc------chhhhcCCCCCEEeCCCCCchh
Confidence 12457889999988887655444 3356789999999999999999
Q ss_pred CCCCCCCCCCCcCeEEEcCC
Q 003300 783 ALPDYLLQTTTLQDLTIWKC 802 (832)
Q Consensus 783 ~lp~~~~~l~~L~~L~l~~c 802 (832)
.+|..+..+++|+.+++..+
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGG
T ss_pred hccHHHhhccCceEEeCCHH
Confidence 99999999999999998754
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=225.83 Aligned_cols=134 Identities=22% Similarity=0.229 Sum_probs=94.1
Q ss_pred cccccEEEecCccccccC---------CCcEEecCCC-cccc-ccccCCCCceeEEEeCCcCcccc-cccccCCCcccEE
Q 003300 444 LACLRALVIRQSLVIRLS---------SSPFRLHSNL-IREI-PKNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKL 511 (832)
Q Consensus 444 ~~~Lr~L~~~~~~~~~~~---------~r~L~L~~n~-l~~l-p~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L 511 (832)
.++|++|.+++|.+.... +++|+|++|. +..+ |..|+++++|++|+|++|.+..+ |..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 356788888877643221 4788888883 4455 66788888888888888888755 7778888888888
Q ss_pred eccCccCccccCcc--cccccCCceeecCCccCccccc-CCCCCCCCCccCCceeeCCccCCCCccCcccc
Q 003300 512 DIRRCRNLKELPAG--IGKLKNMRSLLNGETYSLKYMP-VGISKLTSLRTLDKFVVGGGIDGSNTCRLESL 579 (832)
Q Consensus 512 ~L~~~~~~~~lp~~--l~~l~~L~~L~l~~~~~~~~~p-~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l 579 (832)
+|++|.....+|.. +.++++|++|++++|......| ..++++++|++|+ +.+|.+....+..+..+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~--Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID--FSSNQIFLVCEHELEPL 171 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE--EESSCCCCCCSGGGHHH
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE--CCCCcCCeeCHHHcccc
Confidence 88888765555654 7788888888888886554433 3578888888887 66776655444444433
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=3e-21 Score=210.46 Aligned_cols=280 Identities=18% Similarity=0.192 Sum_probs=212.6
Q ss_pred CCcEEecCCCccccccc-cCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCcccccccCCceeecCC
Q 003300 462 SSPFRLHSNLIREIPKN-VGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 539 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 539 (832)
.++|++++|.++.+|.. +..+++|++|++++|.++.+|. .|.++++|++|++++|......|..++.+++|++|++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 48999999999999987 5789999999999999997764 899999999999999986665567789999999999999
Q ss_pred ccCcccccCC-CCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEE
Q 003300 540 TYSLKYMPVG-ISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRL 618 (832)
Q Consensus 540 ~~~~~~~p~~-l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 618 (832)
|.. +.+|.. +.++++|++|+ +.+|.+....+.. +..+++|+.+++.+..- .. ..+..+++|+.|++
T Consensus 127 n~l-~~l~~~~~~~l~~L~~L~--L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l-~~------~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 127 NDL-SSLPRGIFHNTPKLTTLS--MSNNNLERIEDDT---FQATTSLQNLQLSSNRL-TH------VDLSLIPSLFHANV 193 (390)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEE--CCSSCCCBCCTTT---TSSCTTCCEEECCSSCC-SB------CCGGGCTTCSEEEC
T ss_pred Ccc-CcCCHHHhcCCCCCcEEE--CCCCccCccChhh---ccCCCCCCEEECCCCcC-Cc------cccccccccceeec
Confidence 954 566766 58999999999 7777765444333 44556666777665321 11 13566789999999
Q ss_pred EEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCcc-cc
Q 003300 619 EFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LE 697 (832)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lp-L~ 697 (832)
++|.+. .+..+.+|+.|+++++....+|.. .+++|+.|++++|. +...+.++.+| |+
T Consensus 194 ~~n~l~-------------------~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~-l~~~~~l~~l~~L~ 251 (390)
T 3o6n_A 194 SYNLLS-------------------TLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNN-LTDTAWLLNYPGLV 251 (390)
T ss_dssp CSSCCS-------------------EEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSC-CCCCGGGGGCTTCS
T ss_pred cccccc-------------------ccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCC-CcccHHHcCCCCcc
Confidence 888653 234567899999999988776653 35899999999995 34445555555 55
Q ss_pred ceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecc
Q 003300 698 KLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRS 777 (832)
Q Consensus 698 ~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 777 (832)
.++++ +|.+.+.. +..+..+++|+.|+++++ .++.+. .....+|+|+.|++++
T Consensus 252 ~L~Ls--------~n~l~~~~------------~~~~~~l~~L~~L~L~~n-~l~~~~------~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 252 EVDLS--------YNELEKIM------------YHPFVKMQRLERLYISNN-RLVALN------LYGQPIPTLKVLDLSH 304 (390)
T ss_dssp EEECC--------SSCCCEEE------------SGGGTTCSSCCEEECCSS-CCCEEE------CSSSCCTTCCEEECCS
T ss_pred EEECC--------CCcCCCcC------------hhHccccccCCEEECCCC-cCcccC------cccCCCCCCCEEECCC
Confidence 55544 45444331 123568899999999886 454432 2345789999999999
Q ss_pred cccccCCCCCCCCCCCcCeEEEcCChh
Q 003300 778 CNKLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 778 c~~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
|. +..+|..+..+++|++|++++|+.
T Consensus 305 n~-l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 305 NH-LLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp SC-CCCCGGGHHHHTTCSEEECCSSCC
T ss_pred Cc-ceecCccccccCcCCEEECCCCcc
Confidence 86 888988877889999999999974
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=212.10 Aligned_cols=292 Identities=16% Similarity=0.130 Sum_probs=219.8
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
+.++.+++.++.+|..+. .+|++|+|++|.++.+ |..|.++++|++|+|++|......|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 567888899999998774 6899999999999977 5689999999999999998666668889999999999999995
Q ss_pred CcccccC-CCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEE
Q 003300 542 SLKYMPV-GISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEF 620 (832)
Q Consensus 542 ~~~~~p~-~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 620 (832)
. ..+|. .+.++++|+.|+ +.+|.+....+.. +..+.+|+.+++.+.. +.......+..+++|+.|+++.
T Consensus 92 l-~~~~~~~~~~l~~L~~L~--Ls~n~i~~~~~~~---~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 92 L-KLIPLGVFTGLSNLTKLD--ISENKIVILLDYM---FQDLYNLKSLEVGDND----LVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp C-CSCCTTSSTTCTTCCEEE--CTTSCCCEECTTT---TTTCTTCCEEEECCTT----CCEECTTSSTTCTTCCEEEEES
T ss_pred C-CccCcccccCCCCCCEEE--CCCCccccCChhH---ccccccCCEEECCCCc----cceeChhhccCCCCCCEEECCC
Confidence 5 45554 578999999999 7777765443333 4455666677776532 2222234577889999999999
Q ss_pred ecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCc-hhccccCCcEEEEeccCCCCcCCCCCCccccce
Q 003300 621 GRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPK-WLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKL 699 (832)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l 699 (832)
|.+...+.. .+..+++|+.|++.++....++. .+..+++|++|++++|.....++.- ..
T Consensus 162 n~l~~~~~~--------------~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------~~ 221 (477)
T 2id5_A 162 CNLTSIPTE--------------ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN------CL 221 (477)
T ss_dssp CCCSSCCHH--------------HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT------TT
T ss_pred CcCcccChh--------------HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc------cc
Confidence 987654432 34567899999999998876644 5778999999999999766654431 11
Q ss_pred eccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccc
Q 003300 700 ELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCN 779 (832)
Q Consensus 700 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (832)
...+++.|++.+|.+..... ..+..+++|+.|+++++. +... .+..+..+++|+.|+|++|.
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~------------~~~~~l~~L~~L~Ls~n~-l~~~-----~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPY------------LAVRHLVYLRFLNLSYNP-ISTI-----EGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCH------------HHHTTCTTCCEEECCSSC-CCEE-----CTTSCTTCTTCCEEECCSSC
T ss_pred cCccccEEECcCCcccccCH------------HHhcCccccCeeECCCCc-CCcc-----ChhhccccccCCEEECCCCc
Confidence 22356667777777664321 135688999999988763 4332 33457789999999999988
Q ss_pred cccCCCCCCCCCCCcCeEEEcCChh
Q 003300 780 KLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 780 ~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
.....|..+..+++|+.|++++|..
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCC
T ss_pred cceECHHHhcCcccCCEEECCCCcC
Confidence 4444567788899999999999943
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=2.4e-20 Score=213.56 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=76.6
Q ss_pred CccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCC-CCCCcc-ccceeccccccceeeCccccCCCC--------
Q 003300 650 SVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLELRNLKSVKRVGNEFLGTEE-------- 719 (832)
Q Consensus 650 ~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~lp-L~~l~l~~l~~L~~~~~~~~~~~~-------- 719 (832)
+|+.|+++++....++ ....+++|++|++++|...+.+| .++.++ |+.+++ .+|.+.+...
T Consensus 332 ~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L--------~~N~l~~~~~~~~~~~~l 402 (562)
T 3a79_B 332 NIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL--------QRNGLKNFFKVALMTKNM 402 (562)
T ss_dssp CCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC--------CSSCCCBTTHHHHTTTTC
T ss_pred cceEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEEC--------CCCCcCCcccchhhhcCC
Confidence 3555555555443221 11567899999999996554333 345555 555554 4444443211
Q ss_pred --CC---CCCCCCCC-CC-CCccCCcccceeeccccccccccccccccccccCCC-CccceeeecccccccCCCCCCCCC
Q 003300 720 --SS---EDGPSSSS-SS-PSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIM-PRLSSLEVRSCNKLKALPDYLLQT 791 (832)
Q Consensus 720 --~~---~~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~l 791 (832)
.. ........ .+ ..+..+++|+.|+++++. ++. .. ...+ ++|+.|++++|. ++.+|..+..+
T Consensus 403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~-----~~---~~~l~~~L~~L~L~~N~-l~~ip~~~~~l 472 (562)
T 3a79_B 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTG-----SV---FRCLPPKVKVLDLHNNR-IMSIPKDVTHL 472 (562)
T ss_dssp TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCG-----GG---GSSCCTTCSEEECCSSC-CCCCCTTTTSS
T ss_pred CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCc-----ch---hhhhcCcCCEEECCCCc-CcccChhhcCC
Confidence 00 00000011 11 124455666666665542 221 11 1233 699999999985 88999988889
Q ss_pred CCcCeEEEcCChh
Q 003300 792 TTLQDLTIWKCPI 804 (832)
Q Consensus 792 ~~L~~L~l~~c~~ 804 (832)
++|++|++++|..
T Consensus 473 ~~L~~L~L~~N~l 485 (562)
T 3a79_B 473 QALQELNVASNQL 485 (562)
T ss_dssp CCCSEEECCSSCC
T ss_pred CCCCEEECCCCCC
Confidence 9999999999864
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=217.53 Aligned_cols=334 Identities=16% Similarity=0.139 Sum_probs=162.6
Q ss_pred HHhhcccccEEEecCcccccc----C-----CCcEEecCCCccccc-cccCCCCceeEEEeCCcCcccccc-cccCCCcc
Q 003300 440 LFSKLACLRALVIRQSLVIRL----S-----SSPFRLHSNLIREIP-KNVGKLIHLRYLNLSELGIERLPK-TLCELYNL 508 (832)
Q Consensus 440 ~f~~~~~Lr~L~~~~~~~~~~----~-----~r~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L 508 (832)
.|.++++|++|.+.++.+... + +++|++++|.++.+| ..|+.+++|++|++++|.++.+|. .++++++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 345566666666665542111 1 356666666665554 455666666666666666665544 45666666
Q ss_pred cEEeccCccCcc-ccCcccccccCCceeecCCccCcccccCCCCCCCCC----ccCCceeeCCccCCCCccCccccccCC
Q 003300 509 QKLDIRRCRNLK-ELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSL----RTLDKFVVGGGIDGSNTCRLESLKNLQ 583 (832)
Q Consensus 509 ~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L----~~L~~~~~~~~~~~~~~~~l~~l~~L~ 583 (832)
++|++++|.... .+|..|+++++|++|++++|......|..++.+++| +.|+ +.+|.+....+..+..+
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~--l~~n~l~~~~~~~~~~~---- 200 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD--LSLNPMNFIQPGAFKEI---- 200 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE--CTTCCCCEECTTTTTTC----
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc--cCCCCceecCHHHhccC----
Confidence 666666655333 345666666666666666664443334444444444 3333 33333222111111110
Q ss_pred cCCceeecCCC---------------------------CCC---------------------------ChhhhhhhcccC
Q 003300 584 LLRECGIEGLG---------------------------NVS---------------------------HLDEAERLQLYN 609 (832)
Q Consensus 584 ~L~~l~i~~~~---------------------------~~~---------------------------~~~~~~~~~l~~ 609 (832)
.|+.+.+.+.. ... .........+..
T Consensus 201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence 11112111100 000 000001122344
Q ss_pred CCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCC
Q 003300 610 QQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP 689 (832)
Q Consensus 610 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~ 689 (832)
+++|+.|+++.|.+...+ ..+... +|+.|++.+|....+|. ..+++|+.|++++|......+
T Consensus 281 l~~L~~L~l~~~~l~~l~---------------~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVK---------------DFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp GTTCSEEEEESCEECSCC---------------BCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCC
T ss_pred cCcccEEEecCccchhhh---------------hhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccccccc
Confidence 566777777666543221 123334 67777777776666655 355666666666665433332
Q ss_pred CCCCcc-ccceeccc------------------cccceeeCccccCCCCC-------CC---CCCCCCCC--CCCccCCc
Q 003300 690 PLGKLP-LEKLELRN------------------LKSVKRVGNEFLGTEES-------SE---DGPSSSSS--SPSVIAFP 738 (832)
Q Consensus 690 ~l~~lp-L~~l~l~~------------------l~~L~~~~~~~~~~~~~-------~~---~~~~~~~~--~~~~~~~~ 738 (832)
. ..+| |+.+++.+ ++.|++.+|.+.+.... .. ........ ...+..++
T Consensus 343 ~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 343 E-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp C-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred c-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 2 3333 44444332 22233333332221100 00 00000000 11244566
Q ss_pred ccceeeccccccccccccccccccccCCCCccceeeecccccc-cCCCCCCCCCCCcCeEEEcCChh
Q 003300 739 KLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKL-KALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 739 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
+|++|+++++. +. ...+..+..+++|+.|++++|... ..+|..+..+++|++|++++|..
T Consensus 422 ~L~~L~l~~n~-l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 422 NLIYLDISHTH-TR-----VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp TCCEEECTTSC-CE-----ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCEEeCcCCc-cc-----ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 66666665542 11 112345667888888888888744 35787788888888888888853
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=2.1e-20 Score=208.65 Aligned_cols=300 Identities=20% Similarity=0.215 Sum_probs=218.0
Q ss_pred hcccccEEEecCcccccc-----C--CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccC
Q 003300 443 KLACLRALVIRQSLVIRL-----S--SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRR 515 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~~~~-----~--~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~ 515 (832)
.++++++|.+.++.+... + +++|++++|.++.+|. ++++++|++|++++|.+..++. +.++++|++|++++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 467899999988764221 1 4999999999999987 9999999999999999998877 99999999999999
Q ss_pred ccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCC
Q 003300 516 CRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGN 595 (832)
Q Consensus 516 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~ 595 (832)
|. +..+|. +..+++|++|++++|.. ..+| .+.++++|+.|+ .. +.+. .+..+..+++|+.+++.+..
T Consensus 122 n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~--l~-~~~~-----~~~~~~~l~~L~~L~l~~n~- 188 (466)
T 1o6v_A 122 NQ-ITDIDP-LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLS--FG-NQVT-----DLKPLANLTTLERLDISSNK- 188 (466)
T ss_dssp SC-CCCCGG-GTTCTTCSEEEEEEEEE-CCCG-GGTTCTTCSEEE--EE-ESCC-----CCGGGTTCTTCCEEECCSSC-
T ss_pred CC-CCCChH-HcCCCCCCEEECCCCcc-CCCh-hhccCCcccEee--cC-Cccc-----CchhhccCCCCCEEECcCCc-
Confidence 86 555665 89999999999999954 4455 488999999998 33 2222 22346677778888887654
Q ss_pred CCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCc
Q 003300 596 VSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLR 675 (832)
Q Consensus 596 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~ 675 (832)
+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|....++ .+..+++|+
T Consensus 189 l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~----------------~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~ 246 (466)
T 1o6v_A 189 VSDI-----SVLAKLTNLESLIATNNQISDITP----------------LGILTNLDELSLNGNQLKDIG-TLASLTNLT 246 (466)
T ss_dssp CCCC-----GGGGGCTTCSEEECCSSCCCCCGG----------------GGGCTTCCEEECCSSCCCCCG-GGGGCTTCS
T ss_pred CCCC-----hhhccCCCCCEEEecCCccccccc----------------ccccCCCCEEECCCCCcccch-hhhcCCCCC
Confidence 2222 236788999999999988654321 334689999999999887764 578899999
Q ss_pred EEEEeccCCCCcCCCCCCcc-ccceecccc--------------ccceeeCccccCCCCCCCCCCCCCCCCCCccCCccc
Q 003300 676 NLYLRSCVKCEHLPPLGKLP-LEKLELRNL--------------KSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKL 740 (832)
Q Consensus 676 ~L~L~~~~~~~~l~~l~~lp-L~~l~l~~l--------------~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 740 (832)
.|++++|. +..+++++.++ |+.+++.++ +.|++.+|.+.+. +.+..+++|
T Consensus 247 ~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--------------~~~~~l~~L 311 (466)
T 1o6v_A 247 DLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--------------SPISNLKNL 311 (466)
T ss_dssp EEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC--------------GGGGGCTTC
T ss_pred EEECCCCc-cccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCc--------------hhhcCCCCC
Confidence 99999995 34444466666 666655442 2233333333221 225667778
Q ss_pred ceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChh
Q 003300 741 KSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 741 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
+.|+++++ .+.... .+..+++|+.|++++|. +..++ .+..+++|+.|++++|+.
T Consensus 312 ~~L~L~~n-~l~~~~-------~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 312 TYLTLYFN-NISDIS-------PVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp SEEECCSS-CCSCCG-------GGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCC
T ss_pred CEEECcCC-cCCCch-------hhccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCcc
Confidence 88877765 233221 14578889999998876 66664 566788999999998864
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=2.3e-20 Score=206.51 Aligned_cols=274 Identities=18% Similarity=0.131 Sum_probs=198.2
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
+++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++.+++|++|++++|.
T Consensus 44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSSC
T ss_pred CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCCc
Confidence 589999999999997 7999999999999999999986 8999999999999987 44555 8899999999999995
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
. +.+| ++++++|+.|+ +.+|.+.+. .+..+++|+.+++.....+... .+..+++|+.|++++|
T Consensus 118 l-~~l~--~~~l~~L~~L~--l~~N~l~~l------~l~~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 118 L-TKLD--VSQNPLLTYLN--CARNTLTEI------DVSHNTQLTELDCHLNKKITKL------DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp C-SCCC--CTTCTTCCEEE--CTTSCCSCC------CCTTCTTCCEEECTTCSCCCCC------CCTTCTTCCEEECCSS
T ss_pred C-Ceec--CCCCCcCCEEE--CCCCcccee------ccccCCcCCEEECCCCCccccc------ccccCCcCCEEECCCC
Confidence 4 4455 88999999998 777776542 2556677777777765433332 3677899999999999
Q ss_pred cCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccceec
Q 003300 622 RVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLEL 701 (832)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l 701 (832)
.+... .+..+++|+.|++++|....++ +..+++|+.|++++|.. ..+| ++.++
T Consensus 181 ~l~~l-----------------~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l-~~ip-~~~l~------ 233 (457)
T 3bz5_A 181 KITEL-----------------DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKL-TEID-VTPLT------ 233 (457)
T ss_dssp CCCCC-----------------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCC-SCCC-CTTCT------
T ss_pred cccee-----------------ccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcc-cccC-ccccC------
Confidence 87542 1556789999999999987764 77899999999999963 3355 55444
Q ss_pred cccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeecccccccccccccc---ccccccCCCCccceeeeccc
Q 003300 702 RNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRI---TRKENISIMPRLSSLEVRSC 778 (832)
Q Consensus 702 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~---~~~~~~~~l~~L~~L~l~~c 778 (832)
+++.|++.+|.+.+.. ...+++|+.|++++. +|+...... ...-....+++|+.|++++|
T Consensus 234 -~L~~L~l~~N~l~~~~---------------~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 234 -QLTYFDCSVNPLTELD---------------VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN 296 (457)
T ss_dssp -TCSEEECCSSCCSCCC---------------CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTC
T ss_pred -CCCEEEeeCCcCCCcC---------------HHHCCCCCEEeccCC-CCCEEECCCCccCCcccccccccCCEEECCCC
Confidence 4444555566666542 235555555544331 222222110 01112357899999999999
Q ss_pred ccccCCCCC--------CCCCCCcCeEEEcCC
Q 003300 779 NKLKALPDY--------LLQTTTLQDLTIWKC 802 (832)
Q Consensus 779 ~~l~~lp~~--------~~~l~~L~~L~l~~c 802 (832)
+.++.+|.. +..+++|++|++++|
T Consensus 297 ~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred cccceeccCCCcceEechhhcccCCEEECCCC
Confidence 987777642 233455666665555
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=5.5e-21 Score=220.01 Aligned_cols=281 Identities=18% Similarity=0.184 Sum_probs=213.2
Q ss_pred CCcEEecCCCccccccc-cCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCcccccccCCceeecCC
Q 003300 462 SSPFRLHSNLIREIPKN-VGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 539 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 539 (832)
.++|++++|.+..+|.. +..+++|++|+|++|.++.+|. .|+.+++|++|+|++|......|..|+++++|++|++++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 48999999999999876 5789999999999999997754 899999999999999986665666789999999999999
Q ss_pred ccCcccccCC-CCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEE
Q 003300 540 TYSLKYMPVG-ISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRL 618 (832)
Q Consensus 540 ~~~~~~~p~~-l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 618 (832)
|.. ..+|.. ++++++|+.|+ +.+|.+.+..+..+ ..+++|+.+++.+..- .. ..+..+++|+.|++
T Consensus 133 n~l-~~l~~~~~~~l~~L~~L~--Ls~N~l~~~~~~~~---~~l~~L~~L~L~~N~l-~~------~~~~~l~~L~~L~l 199 (597)
T 3oja_B 133 NDL-SSLPRGIFHNTPKLTTLS--MSNNNLERIEDDTF---QATTSLQNLQLSSNRL-TH------VDLSLIPSLFHANV 199 (597)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEE--CCSSCCCBCCTTTT---TTCTTCCEEECTTSCC-SB------CCGGGCTTCSEEEC
T ss_pred CCC-CCCCHHHhccCCCCCEEE--eeCCcCCCCChhhh---hcCCcCcEEECcCCCC-CC------cChhhhhhhhhhhc
Confidence 954 456655 68999999999 77777665444444 4555666777765421 11 13566789999999
Q ss_pred EEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccc
Q 003300 619 EFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEK 698 (832)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~ 698 (832)
++|.+. .+..+.+|+.|++++|....+|..+ .++|+.|+|++|.. ...+.++.+|
T Consensus 200 ~~n~l~-------------------~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l-~~~~~l~~l~--- 254 (597)
T 3oja_B 200 SYNLLS-------------------TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNL-TDTAWLLNYP--- 254 (597)
T ss_dssp CSSCCS-------------------EEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCC-CCCGGGGGCT---
T ss_pred ccCccc-------------------cccCCchhheeeccCCccccccccc--CCCCCEEECCCCCC-CCChhhccCC---
Confidence 988653 3445678999999999887766543 37899999999953 3345555555
Q ss_pred eeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeeccc
Q 003300 699 LELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSC 778 (832)
Q Consensus 699 l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c 778 (832)
++..|++.+|.+.+.. +..+..+++|+.|+++++ .+..++ ..+..+|+|+.|+|++|
T Consensus 255 ----~L~~L~Ls~N~l~~~~------------~~~~~~l~~L~~L~Ls~N-~l~~l~------~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 255 ----GLVEVDLSYNELEKIM------------YHPFVKMQRLERLYISNN-RLVALN------LYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp ----TCSEEECCSSCCCEEE------------SGGGTTCSSCCEEECTTS-CCCEEE------CSSSCCTTCCEEECCSS
T ss_pred ----CCCEEECCCCccCCCC------------HHHhcCccCCCEEECCCC-CCCCCC------cccccCCCCcEEECCCC
Confidence 3444444555554432 233678999999999886 454432 23457999999999998
Q ss_pred ccccCCCCCCCCCCCcCeEEEcCChh
Q 003300 779 NKLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 779 ~~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
. +..+|..+..+++|+.|++++|+.
T Consensus 312 ~-l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 312 H-LLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp C-CCCCGGGHHHHTTCSEEECCSSCC
T ss_pred C-CCccCcccccCCCCCEEECCCCCC
Confidence 7 778998888899999999999975
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=211.86 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=78.2
Q ss_pred CCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCC-CCCCcc-ccceeccccccceeeCccccCCC--------
Q 003300 649 LSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLELRNLKSVKRVGNEFLGTE-------- 718 (832)
Q Consensus 649 ~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~lp-L~~l~l~~l~~L~~~~~~~~~~~-------- 718 (832)
.+|+.|+++++....++ ....+++|++|++++|...+.+| .++.++ |+.+++.+ |.+.+..
T Consensus 302 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~--------N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM--------NQLKELSKIAEMTTQ 372 (520)
T ss_dssp CCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS--------SCCCBHHHHHHHHTT
T ss_pred CceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC--------CccCccccchHHHhh
Confidence 35666666666654432 12578999999999997555333 345555 55555554 4443210
Q ss_pred --CCC---CCCCCCCC-CCC-CccCCcccceeeccccccccccccccccccccCCC-CccceeeecccccccCCCCCCCC
Q 003300 719 --ESS---EDGPSSSS-SSP-SVIAFPKLKSLIIGAMEELEEWNYRITRKENISIM-PRLSSLEVRSCNKLKALPDYLLQ 790 (832)
Q Consensus 719 --~~~---~~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~ 790 (832)
... ........ .+. .+..+++|+.|+++++. +.. ..+. .+ ++|+.|++++|. ++.+|..+..
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~-----~~~~---~l~~~L~~L~Ls~N~-l~~ip~~~~~ 442 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTD-----TIFR---CLPPRIKVLDLHSNK-IKSIPKQVVK 442 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCG-----GGGG---SCCTTCCEEECCSSC-CCCCCGGGGG
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCc-----chhh---hhcccCCEEECCCCc-ccccchhhhc
Confidence 000 00000111 111 23445566666555542 211 1111 22 689999998886 7789987778
Q ss_pred CCCcCeEEEcCChh
Q 003300 791 TTTLQDLTIWKCPI 804 (832)
Q Consensus 791 l~~L~~L~l~~c~~ 804 (832)
+++|++|++++|..
T Consensus 443 l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 443 LEALQELNVASNQL 456 (520)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcC
Confidence 99999999999853
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=1.6e-20 Score=209.47 Aligned_cols=307 Identities=15% Similarity=0.113 Sum_probs=205.7
Q ss_pred HHHhhcccccEEEecCcccc----c-cC-----CCcEEecCCCcccc-ccccCCCCceeEEEeCCcCccc-cccc--ccC
Q 003300 439 KLFSKLACLRALVIRQSLVI----R-LS-----SSPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIER-LPKT--LCE 504 (832)
Q Consensus 439 ~~f~~~~~Lr~L~~~~~~~~----~-~~-----~r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~-lp~~--~~~ 504 (832)
..|.++++|++|.+.++.+. . .+ +++|++++|.++.+ |..++++++|++|++++|.++. +|.. |.+
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 45778999999999987642 1 11 49999999999886 7889999999999999999984 4554 899
Q ss_pred CCcccEEeccCccCccccCcc-cccccCCceeecCCccCcccccCCCCCC--CCCccCCceeeCCccCCCCccCcc----
Q 003300 505 LYNLQKLDIRRCRNLKELPAG-IGKLKNMRSLLNGETYSLKYMPVGISKL--TSLRTLDKFVVGGGIDGSNTCRLE---- 577 (832)
Q Consensus 505 l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~l~~L--~~L~~L~~~~~~~~~~~~~~~~l~---- 577 (832)
+++|++|++++|......|.. +.++++|++|++++|......|..+..+ .+|+.|+ +.++.+.......+.
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~--l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR--LSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE--CTTCBCTTCSTTCTTHHHH
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc--cccCcccccchhhcccccc
Confidence 999999999999866666765 8899999999999997766666666655 4555555 444443322211110
Q ss_pred -ccccCCcCCceeecCCCCCCChh---------------------------------hhhhhccc--CCCCCCceEEEEe
Q 003300 578 -SLKNLQLLRECGIEGLGNVSHLD---------------------------------EAERLQLY--NQQNLLRLRLEFG 621 (832)
Q Consensus 578 -~l~~L~~L~~l~i~~~~~~~~~~---------------------------------~~~~~~l~--~~~~L~~L~l~~~ 621 (832)
.+..+++|+.+++.+..-..... ......+. ..++|+.|+++.|
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence 11222334444444321100000 00000111 2357888888888
Q ss_pred cCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCC-CchhccccCCcEEEEeccCCCCcCCCCCCcccccee
Q 003300 622 RVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIF-PKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLE 700 (832)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~ 700 (832)
.+.... ...+..+++|+.|++++|....+ |..+..+++|++|+|++|.. ..+++ -.+-.
T Consensus 286 ~l~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-----~~~~~ 345 (455)
T 3v47_A 286 KIFALL--------------KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDS-----RMFEN 345 (455)
T ss_dssp CCCEEC--------------TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECG-----GGGTT
T ss_pred cccccc--------------hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCcCh-----hHhcC
Confidence 764322 22466788999999999988766 56788999999999999963 32211 11223
Q ss_pred ccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeeccccc
Q 003300 701 LRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNK 780 (832)
Q Consensus 701 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 780 (832)
+..++.|++.+|.+.+..+ ..+..+++|++|+++++ .++... +..+..+++|+.|++++|+.
T Consensus 346 l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~-----~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGD------------QSFLGLPNLKELALDTN-QLKSVP-----DGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CTTCCEEECCSSCCCEECT------------TTTTTCTTCCEEECCSS-CCSCCC-----TTTTTTCTTCCEEECCSSCB
T ss_pred cccCCEEECCCCcccccCh------------hhccccccccEEECCCC-ccccCC-----HhHhccCCcccEEEccCCCc
Confidence 4455556666666654422 23678999999999885 454432 34467899999999999995
Q ss_pred ccCCC
Q 003300 781 LKALP 785 (832)
Q Consensus 781 l~~lp 785 (832)
-...|
T Consensus 408 ~~~~~ 412 (455)
T 3v47_A 408 DCSCP 412 (455)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 55554
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=5.6e-20 Score=195.49 Aligned_cols=69 Identities=4% Similarity=-0.097 Sum_probs=33.4
Q ss_pred ccCCcccceeeccccccccccccccccc-cccCCCCccceeeecccccc--cCCCCCCCCCCCcCeEEEcCCh
Q 003300 734 VIAFPKLKSLIIGAMEELEEWNYRITRK-ENISIMPRLSSLEVRSCNKL--KALPDYLLQTTTLQDLTIWKCP 803 (832)
Q Consensus 734 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~c~ 803 (832)
+..+++|+.|+++++ .++......... .....+++|+.|++++|+.. ...|..+..+++|+.|++++|.
T Consensus 260 l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 445666666666653 333332211000 00112566777777777633 2334455667777777777764
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=214.93 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=97.2
Q ss_pred HHHhhcccccEEEecCcccccc----C-----CCcEEecCCCcccccc-ccCCCCceeEEEeCCcCccc--ccccccCCC
Q 003300 439 KLFSKLACLRALVIRQSLVIRL----S-----SSPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIER--LPKTLCELY 506 (832)
Q Consensus 439 ~~f~~~~~Lr~L~~~~~~~~~~----~-----~r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~--lp~~~~~l~ 506 (832)
..|.++++||+|.+.++.+... + +++|++++|.++.++. .++++++|++|++++|.++. +|..|++++
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 149 (570)
T 2z63_A 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (570)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred ccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccC
Confidence 4577899999999999864322 1 4999999999999876 69999999999999999985 799999999
Q ss_pred cccEEeccCccCccccCcccccccCC----ceeecCCccCcccccCCCCCCCCCccCC
Q 003300 507 NLQKLDIRRCRNLKELPAGIGKLKNM----RSLLNGETYSLKYMPVGISKLTSLRTLD 560 (832)
Q Consensus 507 ~L~~L~L~~~~~~~~lp~~l~~l~~L----~~L~l~~~~~~~~~p~~l~~L~~L~~L~ 560 (832)
+|++|++++|......|..++.+++| ++|++++|......|..+..+ +|+.|+
T Consensus 150 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~ 206 (570)
T 2z63_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206 (570)
T ss_dssp TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEE
T ss_pred CCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEe
Confidence 99999999988666666778888888 889999986555444444433 566654
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=6e-20 Score=210.11 Aligned_cols=181 Identities=18% Similarity=0.102 Sum_probs=132.9
Q ss_pred CCcEEecCCCcccc-ccccCCCCceeEEEeCCcCccccc-ccccCCCcccEEeccCccCccccCcccccccCCceeecCC
Q 003300 462 SSPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 539 (832)
Q Consensus 462 ~r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 539 (832)
.++|++++|.++.+ |..++++++|++|++++|.++.++ ..|.++++|++|++++|......|..|+++++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 48999999999887 567999999999999999999765 6799999999999999885554455599999999999999
Q ss_pred ccCcc-cccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEE
Q 003300 540 TYSLK-YMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRL 618 (832)
Q Consensus 540 ~~~~~-~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 618 (832)
|.... ..|..++++++|++|+ +.+|...+..+ ...+..+++|+.+++.+.. +.......+..+++|+.|++
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~--L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~----l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLR--IGNVETFSEIR--RIDFAGLTSLNELEIKALS----LRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEE--EEESSSCCEEC--TTTTTTCCEEEEEEEEETT----CCEECTTTTTTCSEEEEEEE
T ss_pred CcccccchhhhhhccCCccEEE--CCCCccccccC--HhhhhcccccCeeeccCCc----ccccChhhhhccccCceEec
Confidence 96554 3567899999999999 66665221111 1234556666677666532 11222335777889999999
Q ss_pred EEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCC
Q 003300 619 EFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIF 664 (832)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 664 (832)
+.|.....+. .. +..+++|+.|++++|....+
T Consensus 180 ~~n~~~~~~~-----------~~---~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 180 HLSESAFLLE-----------IF---ADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ECSBSTTHHH-----------HH---HHSTTTBSEEEEESCBCTTC
T ss_pred ccCcccccch-----------hh---HhhcccccEEEccCCccccc
Confidence 9887542211 11 12368899999999987654
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.8e-19 Score=211.70 Aligned_cols=122 Identities=22% Similarity=0.212 Sum_probs=92.6
Q ss_pred HHHHhhcccccEEEecCcccccc----C-----CCcEEecCCCccccc-cccCCCCceeEEEeCCcCcccc-cccccCCC
Q 003300 438 RKLFSKLACLRALVIRQSLVIRL----S-----SSPFRLHSNLIREIP-KNVGKLIHLRYLNLSELGIERL-PKTLCELY 506 (832)
Q Consensus 438 ~~~f~~~~~Lr~L~~~~~~~~~~----~-----~r~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~ 506 (832)
...|.++++|++|.+.++.+... + +++|++++|.++.+| ..++++++|++|++++|.+..+ |..+.+++
T Consensus 66 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 145 (680)
T 1ziw_A 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145 (680)
T ss_dssp TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT
T ss_pred HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccc
Confidence 35688899999999998764221 1 489999999998886 5789999999999999998854 56788999
Q ss_pred cccEEeccCccCccccCcccc--cccCCceeecCCccCcccccCCCCCCCCCccC
Q 003300 507 NLQKLDIRRCRNLKELPAGIG--KLKNMRSLLNGETYSLKYMPVGISKLTSLRTL 559 (832)
Q Consensus 507 ~L~~L~L~~~~~~~~lp~~l~--~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L 559 (832)
+|++|++++|......|..+. .+++|++|++++|......|..+..+++|+.|
T Consensus 146 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred cCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 999999999875444444443 56889999999986655555555555544443
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.5e-19 Score=192.08 Aligned_cols=290 Identities=14% Similarity=0.085 Sum_probs=143.5
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
++++++++.++.+|..+. ++|++|++++|.++.+|. .|.++++|++|++++|......|..|..+++|++|++++|.
T Consensus 34 ~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp TEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred eEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 556666666666665553 466666666666665544 46666666666666665444446666666666666666663
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
++.+|..+. ++|++|+ +.+|.+....... +..+++|+.+++....... .......+..+++|+.|++++|
T Consensus 112 -l~~l~~~~~--~~L~~L~--l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 112 -LKELPEKMP--KTLQELR--VHENEITKVRKSV---FNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp -CSBCCSSCC--TTCCEEE--CCSSCCCBBCHHH---HTTCTTCCEEECCSSCCCG--GGBCTTGGGGCTTCCEEECCSS
T ss_pred -CCccChhhc--ccccEEE--CCCCcccccCHhH---hcCCccccEEECCCCcCCc--cCcChhhccCCCCcCEEECCCC
Confidence 334555443 4566665 4444433222111 2333344444443321100 0111223556667777777766
Q ss_pred cCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCC-CchhccccCCcEEEEeccCCCCcCC-CCCCccccce
Q 003300 622 RVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIF-PKWLTSLTNLRNLYLRSCVKCEHLP-PLGKLPLEKL 699 (832)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~lpL~~l 699 (832)
.+...+.. .+++|+.|++++|....+ |..+..+++|++|+|++|......+ .++.
T Consensus 182 ~l~~l~~~-----------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 238 (330)
T 1xku_A 182 NITTIPQG-----------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------ 238 (330)
T ss_dssp CCCSCCSS-----------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------
T ss_pred ccccCCcc-----------------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC------
Confidence 65432211 125677777777665544 4566677777777777774222111 1222
Q ss_pred eccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccc-cccccCCCCccceeeeccc
Q 003300 700 ELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRIT-RKENISIMPRLSSLEVRSC 778 (832)
Q Consensus 700 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~-~~~~~~~l~~L~~L~l~~c 778 (832)
+.+++.|++.+|.+... +..+..+++|++|+++++ .++....... .......+++|+.|++++|
T Consensus 239 -l~~L~~L~L~~N~l~~l-------------p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 239 -TPHLRELHLNNNKLVKV-------------PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp -STTCCEEECCSSCCSSC-------------CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred -CCCCCEEECCCCcCccC-------------ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecC
Confidence 22333333344443321 122345666666666554 2333221100 0001112456666666666
Q ss_pred cccc--CCCCCCCCCCCcCeEEEcCC
Q 003300 779 NKLK--ALPDYLLQTTTLQDLTIWKC 802 (832)
Q Consensus 779 ~~l~--~lp~~~~~l~~L~~L~l~~c 802 (832)
+... ..|..+..+++|+.+++++|
T Consensus 304 ~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccCccccccccceeEEEeccc
Confidence 6221 22334555666666666665
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.1e-20 Score=197.04 Aligned_cols=276 Identities=17% Similarity=0.161 Sum_probs=151.0
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
.+.+.+++.++.+|..+. ++|++|++++|.++.+|. .|.++++|++|++++|......|..|.++++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 456777778888877665 478888888888877665 67788888888888876554445667788888888888874
Q ss_pred CcccccCC-CCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEE
Q 003300 542 SLKYMPVG-ISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEF 620 (832)
Q Consensus 542 ~~~~~p~~-l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 620 (832)
.. .+|.. ++++++|++|+ +.+|.+..... ...+..+++|+.+++.+...+. ......+..+++|+.|++++
T Consensus 112 l~-~~~~~~~~~l~~L~~L~--L~~n~l~~l~~--~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 112 LS-NLSSSWFKPLSSLTFLN--LLGNPYKTLGE--TSLFSHLTKLQILRVGNMDTFT---KIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp CS-SCCHHHHTTCTTCSEEE--CTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCC---EECTTTTTTCCEEEEEEEEE
T ss_pred CC-cCCHhHhCCCccCCEEE--CCCCCCcccCc--hhhhccCCCCcEEECCCCcccc---ccCHHHccCCCCCCEEECCC
Confidence 43 44443 67777777777 55554332111 0112222233333333211110 01111233444555555555
Q ss_pred ecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhc-cccCCcEEEEeccCCCCcCCCCCCccccce
Q 003300 621 GRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLT-SLTNLRNLYLRSCVKCEHLPPLGKLPLEKL 699 (832)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~-~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l 699 (832)
|.+.... ...+..+++|+.|++++|....+|..+. .+++|+.|++++
T Consensus 184 n~l~~~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~------------------ 231 (353)
T 2z80_A 184 SDLQSYE--------------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD------------------ 231 (353)
T ss_dssp TTCCEEC--------------TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES------------------
T ss_pred CCcCccC--------------HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC------------------
Confidence 5432111 1123333444444444444433333221 244444444444
Q ss_pred eccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccc
Q 003300 700 ELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCN 779 (832)
Q Consensus 700 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (832)
|.+.+.... ........+.++.++++++ .+...... ..+..+..+++|+.|++++|.
T Consensus 232 ------------n~l~~~~~~---------~l~~~~~~~~l~~l~L~~~-~l~~~~l~-~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 232 ------------TDLDTFHFS---------ELSTGETNSLIKKFTFRNV-KITDESLF-QVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp ------------CBCTTCCCC---------------CCCCCCEEEEESC-BCCHHHHH-HHHHHHHTCTTCCEEECCSSC
T ss_pred ------------Ccccccccc---------ccccccccchhhccccccc-cccCcchh-hhHHHHhcccCCCEEECCCCC
Confidence 444332110 0001123455666655554 23322211 123345678999999999987
Q ss_pred cccCCCCCC-CCCCCcCeEEEcCChh
Q 003300 780 KLKALPDYL-LQTTTLQDLTIWKCPI 804 (832)
Q Consensus 780 ~l~~lp~~~-~~l~~L~~L~l~~c~~ 804 (832)
++.+|..+ ..+++|++|++++|+.
T Consensus 289 -l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 289 -LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 78999875 6899999999999964
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=8e-19 Score=186.47 Aligned_cols=289 Identities=16% Similarity=0.186 Sum_probs=197.3
Q ss_pred cccEEEecCcccccc------CCCcEEecCCCcccccc-ccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCcc
Q 003300 446 CLRALVIRQSLVIRL------SSSPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCR 517 (832)
Q Consensus 446 ~Lr~L~~~~~~~~~~------~~r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~ 517 (832)
+++.+.+.++.+... ..++|++++|.++.++. .++++++|++|++++|.++.+ |..|.++++|++|++++|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 678888877653221 14899999999999876 689999999999999999976 8889999999999999987
Q ss_pred CccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCC
Q 003300 518 NLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVS 597 (832)
Q Consensus 518 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~ 597 (832)
+..+|..+. ++|++|++++|......+..+.++++|+.|+ +.+|.+.. .......+..+++|+.+.+.+..- .
T Consensus 112 -l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l-~ 184 (330)
T 1xku_A 112 -LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE--LGTNPLKS-SGIENGAFQGMKKLSYIRIADTNI-T 184 (330)
T ss_dssp -CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE--CCSSCCCG-GGBCTTGGGGCTTCCEEECCSSCC-C
T ss_pred -CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE--CCCCcCCc-cCcChhhccCCCCcCEEECCCCcc-c
Confidence 667887665 7999999999966555555688999999998 66665432 112223456666777777765331 1
Q ss_pred ChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCC-chhccccCCcE
Q 003300 598 HLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFP-KWLTSLTNLRN 676 (832)
Q Consensus 598 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~l~~l~~L~~ 676 (832)
.+. . ...++|+.|++++|.+....+ ..+..+++|+.|++++|....++ .++..+++|++
T Consensus 185 ~l~---~---~~~~~L~~L~l~~n~l~~~~~--------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 185 TIP---Q---GLPPSLTELHLDGNKITKVDA--------------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp SCC---S---SCCTTCSEEECTTSCCCEECT--------------GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred cCC---c---cccccCCEEECCCCcCCccCH--------------HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 111 0 112789999999887653322 24567789999999999887665 47889999999
Q ss_pred EEEeccCCCCcCCC-CCCccccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccc
Q 003300 677 LYLRSCVKCEHLPP-LGKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWN 755 (832)
Q Consensus 677 L~L~~~~~~~~l~~-l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 755 (832)
|+|++|.. ..+|. +..+ .+++.|++.+|.+.+....... .......++.|+.|++++.+ +..+.
T Consensus 245 L~L~~N~l-~~lp~~l~~l-------~~L~~L~l~~N~i~~~~~~~f~------~~~~~~~~~~l~~l~l~~N~-~~~~~ 309 (330)
T 1xku_A 245 LHLNNNKL-VKVPGGLADH-------KYIQVVYLHNNNISAIGSNDFC------PPGYNTKKASYSGVSLFSNP-VQYWE 309 (330)
T ss_dssp EECCSSCC-SSCCTTTTTC-------SSCCEEECCSSCCCCCCTTSSS------CSSCCTTSCCCSEEECCSSS-SCGGG
T ss_pred EECCCCcC-ccCChhhccC-------CCcCEEECCCCcCCccChhhcC------CcccccccccccceEeecCc-ccccc
Confidence 99999953 34432 3333 4455555566666554321100 00011245788899887753 33332
Q ss_pred cccccccccCCCCccceeeecccc
Q 003300 756 YRITRKENISIMPRLSSLEVRSCN 779 (832)
Q Consensus 756 ~~~~~~~~~~~l~~L~~L~l~~c~ 779 (832)
. .+..+..+++|+.+++++|.
T Consensus 310 i---~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 I---QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp S---CGGGGTTCCCGGGEEC----
T ss_pred c---CccccccccceeEEEecccC
Confidence 2 44567789999999998874
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2.4e-20 Score=196.03 Aligned_cols=245 Identities=16% Similarity=0.099 Sum_probs=158.9
Q ss_pred CcEEecCCCcc---ccccccCCCCceeEEEeCC-cCcc-cccccccCCCcccEEeccCccCccccCcccccccCCceeec
Q 003300 463 SPFRLHSNLIR---EIPKNVGKLIHLRYLNLSE-LGIE-RLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLN 537 (832)
Q Consensus 463 r~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls~-~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l 537 (832)
+.|++++|.+. .+|..++++++|++|++++ |.+. .+|..|+++++|++|++++|...+.+|..|.++++|++|++
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 45677788877 5888899999999999985 7777 78888999999999999998876788888999999999999
Q ss_pred CCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCC-CCCce
Q 003300 538 GETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQ-NLLRL 616 (832)
Q Consensus 538 ~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~-~L~~L 616 (832)
++|.....+|..+.++++|++|+ +.+|.+.+..+.. +..+. +|+.|
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~--L~~N~l~~~~p~~-------------------------------l~~l~~~L~~L 179 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGIT--FDGNRISGAIPDS-------------------------------YGSFSKLFTSM 179 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEE--CCSSCCEEECCGG-------------------------------GGCCCTTCCEE
T ss_pred CCCccCCcCChHHhcCCCCCeEE--CcCCcccCcCCHH-------------------------------HhhhhhcCcEE
Confidence 99876667888888888888888 5565533211111 22222 45555
Q ss_pred EEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCC-CCCchhccccCCcEEEEeccCCCCcCCCCCCcc
Q 003300 617 RLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGN-IFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP 695 (832)
Q Consensus 617 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lp 695 (832)
++++|.+....+. .+.... |+.|++++|... ..|..+..+++|+.|+|++|.....+|
T Consensus 180 ~L~~N~l~~~~~~--------------~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------ 238 (313)
T 1ogq_A 180 TISRNRLTGKIPP--------------TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG------ 238 (313)
T ss_dssp ECCSSEEEEECCG--------------GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG------
T ss_pred ECcCCeeeccCCh--------------HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC------
Confidence 5555543211000 111111 555555554432 235555666666666666664211111
Q ss_pred ccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeee
Q 003300 696 LEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEV 775 (832)
Q Consensus 696 L~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 775 (832)
.+..+++|++|+++++. +. ...+..+..+++|+.|++
T Consensus 239 -------------------------------------~~~~l~~L~~L~Ls~N~-l~-----~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 239 -------------------------------------KVGLSKNLNGLDLRNNR-IY-----GTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp -------------------------------------GCCCCTTCCEEECCSSC-CE-----ECCCGGGGGCTTCCEEEC
T ss_pred -------------------------------------cccccCCCCEEECcCCc-cc-----CcCChHHhcCcCCCEEEC
Confidence 12356677777666542 22 123345667788888888
Q ss_pred cccccccCCCCCCCCCCCcCeEEEcCChhh
Q 003300 776 RSCNKLKALPDYLLQTTTLQDLTIWKCPIL 805 (832)
Q Consensus 776 ~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L 805 (832)
++|+....+|.. ..+++|+.|++++|+.+
T Consensus 276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 276 SFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred cCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 887755567765 56778888888888754
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=9.7e-19 Score=185.89 Aligned_cols=287 Identities=17% Similarity=0.164 Sum_probs=192.0
Q ss_pred cccEEEecCcccccc------CCCcEEecCCCccccc-cccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCcc
Q 003300 446 CLRALVIRQSLVIRL------SSSPFRLHSNLIREIP-KNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCR 517 (832)
Q Consensus 446 ~Lr~L~~~~~~~~~~------~~r~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~ 517 (832)
+++.+.+.++.+... -.++|++++|.++.++ ..++++++|++|++++|.++.+ |..|.++++|++|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 578888877654222 1489999999998875 4789999999999999999966 7789999999999999986
Q ss_pred CccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCC--CCccCccccccCCcCCceeecCCCC
Q 003300 518 NLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDG--SNTCRLESLKNLQLLRECGIEGLGN 595 (832)
Q Consensus 518 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~--~~~~~l~~l~~L~~L~~l~i~~~~~ 595 (832)
+..+|..+. ++|++|++++|......+..+.++++|+.|+ +.+|.+.. ..+..+.. + +|+.+++.+..-
T Consensus 114 -l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~~~---l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 114 -LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE--MGGNPLENSGFEPGAFDG---L-KLNYLRISEAKL 184 (332)
T ss_dssp -CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE--CCSCCCBGGGSCTTSSCS---C-CCSCCBCCSSBC
T ss_pred -CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE--CCCCccccCCCCcccccC---C-ccCEEECcCCCC
Confidence 557887665 8999999999965543334588899999998 66666532 22333333 3 455555554321
Q ss_pred CCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCc-hhccccCC
Q 003300 596 VSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPK-WLTSLTNL 674 (832)
Q Consensus 596 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~l~~l~~L 674 (832)
..+. . .-.++|+.|++++|.+..... ..+..+++|+.|++++|....++. ++..+++|
T Consensus 185 -~~l~---~---~~~~~L~~L~l~~n~i~~~~~--------------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 185 -TGIP---K---DLPETLNELHLDHNKIQAIEL--------------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp -SSCC---S---SSCSSCSCCBCCSSCCCCCCT--------------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred -CccC---c---cccCCCCEEECCCCcCCccCH--------------HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 1111 0 112689999999988765432 256677899999999998877754 78899999
Q ss_pred cEEEEeccCCCCcCCCCCCccccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeecccccccccc
Q 003300 675 RNLYLRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEW 754 (832)
Q Consensus 675 ~~L~L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 754 (832)
++|+|++|. +..+|. ....+.+++.|++.+|.+......... .......+++|+.|++.+++ +..+
T Consensus 244 ~~L~L~~N~-l~~lp~------~l~~l~~L~~L~l~~N~l~~~~~~~~~------~~~~~~~~~~l~~L~l~~N~-~~~~ 309 (332)
T 2ft3_A 244 RELHLDNNK-LSRVPA------GLPDLKLLQVVYLHTNNITKVGVNDFC------PVGFGVKRAYYNGISLFNNP-VPYW 309 (332)
T ss_dssp CEEECCSSC-CCBCCT------TGGGCTTCCEEECCSSCCCBCCTTSSS------CSSCCSSSCCBSEEECCSSS-SCGG
T ss_pred CEEECCCCc-CeecCh------hhhcCccCCEEECCCCCCCccChhHcc------ccccccccccccceEeecCc-cccc
Confidence 999999995 334432 222344555566666666554321100 00001236789999888764 3322
Q ss_pred ccccccccccCCCCccceeeecccc
Q 003300 755 NYRITRKENISIMPRLSSLEVRSCN 779 (832)
Q Consensus 755 ~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (832)
. ..+..+..+++|+.|++++|.
T Consensus 310 ~---~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 E---VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp G---SCGGGGTTBCCSTTEEC----
T ss_pred c---cCcccccccchhhhhhccccc
Confidence 2 244567789999999999886
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.5e-18 Score=191.63 Aligned_cols=285 Identities=20% Similarity=0.203 Sum_probs=154.1
Q ss_pred ccccEEEecCcccccc-----CCCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCc
Q 003300 445 ACLRALVIRQSLVIRL-----SSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNL 519 (832)
Q Consensus 445 ~~Lr~L~~~~~~~~~~-----~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~ 519 (832)
++|+.|.+.++.+... -+++|++++|.++.+|... ++|++|++++|.++.+| .|+++++|++|++++|. +
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l 165 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-L 165 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-C
T ss_pred CCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-C
Confidence 4567777666654321 1367777777766655321 56777777777777776 47777777777777765 4
Q ss_pred cccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCCh
Q 003300 520 KELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHL 599 (832)
Q Consensus 520 ~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~ 599 (832)
..+|..+ .+|++|++++|.. ..+| .++++++|+.|+ +.+|.+.+. +.. ..+|+.+++.+..- ..+
T Consensus 166 ~~lp~~~---~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~--l~~N~l~~l-~~~------~~~L~~L~l~~n~l-~~l 230 (454)
T 1jl5_A 166 KKLPDLP---PSLEFIAAGNNQL-EELP-ELQNLPFLTAIY--ADNNSLKKL-PDL------PLSLESIVAGNNIL-EEL 230 (454)
T ss_dssp SCCCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEE--CCSSCCSSC-CCC------CTTCCEEECCSSCC-SSC
T ss_pred cccCCCc---ccccEEECcCCcC-CcCc-cccCCCCCCEEE--CCCCcCCcC-CCC------cCcccEEECcCCcC-Ccc
Confidence 4455533 4677777777743 3355 467777777776 555554321 111 12445555544321 111
Q ss_pred hhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEE
Q 003300 600 DEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYL 679 (832)
Q Consensus 600 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L 679 (832)
+ .+..+++|+.|++++|.+...+. .+.+|+.|++++|....+|.. +++|++|++
T Consensus 231 p-----~~~~l~~L~~L~l~~N~l~~l~~------------------~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~l 284 (454)
T 1jl5_A 231 P-----ELQNLPFLTTIYADNNLLKTLPD------------------LPPSLEALNVRDNYLTDLPEL---PQSLTFLDV 284 (454)
T ss_dssp C-----CCTTCTTCCEEECCSSCCSSCCS------------------CCTTCCEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred c-----ccCCCCCCCEEECCCCcCCcccc------------------cccccCEEECCCCcccccCcc---cCcCCEEEC
Confidence 1 25566777777777766543211 135677777777766666553 356677777
Q ss_pred eccCCCCcCCCCCCcc-ccceecc------------ccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeecc
Q 003300 680 RSCVKCEHLPPLGKLP-LEKLELR------------NLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIG 746 (832)
Q Consensus 680 ~~~~~~~~l~~l~~lp-L~~l~l~------------~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 746 (832)
++|.. ..+|.+ .+ ++.+++. .++.|++.+|.+.+.+ ..+++|+.|+++
T Consensus 285 s~N~l-~~l~~~--~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp----------------~~~~~L~~L~L~ 345 (454)
T 1jl5_A 285 SENIF-SGLSEL--PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----------------ALPPRLERLIAS 345 (454)
T ss_dssp CSSCC-SEESCC--CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCC----------------CCCTTCCEEECC
T ss_pred cCCcc-CcccCc--CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccc----------------ccCCcCCEEECC
Confidence 76642 222211 01 3333322 3444555555555432 136788888887
Q ss_pred ccccccccccccccccccCCCCccceeeeccccccc--CCCCCCCCC-------------CCcCeEEEcCChh
Q 003300 747 AMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLK--ALPDYLLQT-------------TTLQDLTIWKCPI 804 (832)
Q Consensus 747 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l-------------~~L~~L~l~~c~~ 804 (832)
++ .++.++ . .+++|+.|++++|+... .+|..+..+ ++|+.|++++|+.
T Consensus 346 ~N-~l~~lp------~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 346 FN-HLAEVP------E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp SS-CCSCCC------C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred CC-cccccc------c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 75 344322 1 46889999998887444 466666655 7889999998865
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1.3e-19 Score=190.57 Aligned_cols=234 Identities=17% Similarity=0.205 Sum_probs=181.9
Q ss_pred ccccEEEecCccccc--cC---------CCcEEecC-CCcc-ccccccCCCCceeEEEeCCcCcc-cccccccCCCcccE
Q 003300 445 ACLRALVIRQSLVIR--LS---------SSPFRLHS-NLIR-EIPKNVGKLIHLRYLNLSELGIE-RLPKTLCELYNLQK 510 (832)
Q Consensus 445 ~~Lr~L~~~~~~~~~--~~---------~r~L~L~~-n~l~-~lp~~l~~l~~L~~L~Ls~~~i~-~lp~~~~~l~~L~~ 510 (832)
.+++.|.+.++.+.. .. +++|++++ |.+. .+|..++++++|++|++++|.++ .+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467788887765432 11 48889984 7776 68999999999999999999998 88999999999999
Q ss_pred EeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCC-CCccCCceeeCCccCCCCccCccccccCCcCCcee
Q 003300 511 LDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLT-SLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECG 589 (832)
Q Consensus 511 L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~-~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~ 589 (832)
|++++|...+.+|..+..+++|++|++++|.....+|..+..++ +|+.|+ +.+|.+.+..+..+..+ . |+.++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~--L~~N~l~~~~~~~~~~l---~-L~~L~ 203 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT--ISRNRLTGKIPPTFANL---N-LAFVD 203 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE--CCSSEEEEECCGGGGGC---C-CSEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE--CcCCeeeccCChHHhCC---c-ccEEE
Confidence 99999987778999999999999999999977768898899998 999998 77777654444444444 3 66666
Q ss_pred ecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCC-CCCchh
Q 003300 590 IEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGN-IFPKWL 668 (832)
Q Consensus 590 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~l 668 (832)
+.+.. +.......+..+++|+.|++++|.+... ...+..+++|+.|++++|... .+|.++
T Consensus 204 Ls~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 204 LSRNM----LEGDASVLFGSDKNTQKIHLAKNSLAFD---------------LGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp CCSSE----EEECCGGGCCTTSCCSEEECCSSEECCB---------------GGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred CcCCc----ccCcCCHHHhcCCCCCEEECCCCceeee---------------cCcccccCCCCEEECcCCcccCcCChHH
Confidence 66532 2222334577889999999999986532 123566789999999999986 789999
Q ss_pred ccccCCcEEEEeccCCCCcCCCCCCcc-ccceeccc
Q 003300 669 TSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLELRN 703 (832)
Q Consensus 669 ~~l~~L~~L~L~~~~~~~~l~~l~~lp-L~~l~l~~ 703 (832)
..+++|++|+|++|...+.+|..+.++ ++.+++.+
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcC
Confidence 999999999999997666777766665 55555444
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=2.5e-18 Score=195.73 Aligned_cols=255 Identities=18% Similarity=0.215 Sum_probs=143.2
Q ss_pred cEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCc
Q 003300 464 PFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSL 543 (832)
Q Consensus 464 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 543 (832)
+|++++|.++.+|..+. ++|++|++++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++|++++|. +
T Consensus 44 ~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l 113 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSNP-L 113 (622)
T ss_dssp EEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSCC-C
T ss_pred EEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCCc-C
Confidence 34445555555555443 455555555555555554 34555555555544 334444 34555555555552 2
Q ss_pred ccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecC
Q 003300 544 KYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRV 623 (832)
Q Consensus 544 ~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 623 (832)
..+|. .+++|+.|+ +.+|.+.... . .+++|+.+++++.. +..+. ....+|+.|++++|.+
T Consensus 114 ~~l~~---~l~~L~~L~--L~~N~l~~lp-~------~l~~L~~L~Ls~N~-l~~l~-------~~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 114 THLPA---LPSGLCKLW--IFGNQLTSLP-V------LPPGLQELSVSDNQ-LASLP-------ALPSELCKLWAYNNQL 173 (622)
T ss_dssp CCCCC---CCTTCCEEE--CCSSCCSCCC-C------CCTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSCC
T ss_pred CCCCC---CCCCcCEEE--CCCCCCCcCC-C------CCCCCCEEECcCCc-CCCcC-------CccCCCCEEECCCCCC
Confidence 33333 334445444 3344332211 1 01333333333321 11110 1234667777776665
Q ss_pred CCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccceeccc
Q 003300 624 VDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLELRN 703 (832)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~~ 703 (832)
...+ ..+++|+.|++++|....+|.. +++|+.|++++|. +..+|.. +.+
T Consensus 174 ~~l~------------------~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~~~---------~~~ 222 (622)
T 3g06_A 174 TSLP------------------MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPAL---------PSG 222 (622)
T ss_dssp SCCC------------------CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCCC---------CTT
T ss_pred CCCc------------------ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCc-ccccCCC---------CCC
Confidence 4321 2346788888888877776653 4678888888874 3333321 144
Q ss_pred cccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccC
Q 003300 704 LKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKA 783 (832)
Q Consensus 704 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 783 (832)
+..|++.+|.+.+.+ ..+++|+.|+++++ .++.++. .+++|+.|++++|. ++.
T Consensus 223 L~~L~Ls~N~L~~lp----------------~~l~~L~~L~Ls~N-~L~~lp~---------~~~~L~~L~Ls~N~-L~~ 275 (622)
T 3g06_A 223 LKELIVSGNRLTSLP----------------VLPSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRNQ-LTR 275 (622)
T ss_dssp CCEEECCSSCCSCCC----------------CCCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSC-CCS
T ss_pred CCEEEccCCccCcCC----------------CCCCcCcEEECCCC-CCCcCCc---------ccccCcEEeCCCCC-CCc
Confidence 555566666665432 35688999988875 4544322 57889999998876 778
Q ss_pred CCCCCCCCCCcCeEEEcCChhhH
Q 003300 784 LPDYLLQTTTLQDLTIWKCPILE 806 (832)
Q Consensus 784 lp~~~~~l~~L~~L~l~~c~~L~ 806 (832)
+|..+..+++|+.|++++|+.-.
T Consensus 276 lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCHHHhhccccCEEEecCCCCCC
Confidence 99888889999999999997543
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=1.2e-18 Score=184.16 Aligned_cols=214 Identities=21% Similarity=0.292 Sum_probs=165.5
Q ss_pred CCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCC
Q 003300 481 KLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLD 560 (832)
Q Consensus 481 ~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~ 560 (832)
...++++|+|++|.++.+|..++++++|++|++++|... .+|..++++++|++|++++|... .+|..++++++|+.|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 357899999999999999999999999999999998754 89999999999999999999554 7788888888888887
Q ss_pred ceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHH
Q 003300 561 KFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQ 640 (832)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 640 (832)
+.+|...+. ++. .+.. ..
T Consensus 157 --L~~n~~~~~------------------------~p~-------~~~~-----------~~------------------ 174 (328)
T 4fcg_A 157 --IRACPELTE------------------------LPE-------PLAS-----------TD------------------ 174 (328)
T ss_dssp --EEEETTCCC------------------------CCS-------CSEE-----------EC------------------
T ss_pred --CCCCCCccc------------------------cCh-------hHhh-----------cc------------------
Confidence 444331110 000 0000 00
Q ss_pred HhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccceeccccccceeeCccccCCCCC
Q 003300 641 LLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLGTEES 720 (832)
Q Consensus 641 ~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~ 720 (832)
....+..+++|+.|++++|....+|.++..+++|++|+|++|... .+|
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-------~l~------------------------- 222 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-------ALG------------------------- 222 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-------CCC-------------------------
T ss_pred chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-------cCc-------------------------
Confidence 011234568899999999998889999999999999999998521 111
Q ss_pred CCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEc
Q 003300 721 SEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIW 800 (832)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 800 (832)
+.+..+++|+.|++++|...... +..+..+++|+.|++++|+.+..+|..+..+++|++|+++
T Consensus 223 -----------~~l~~l~~L~~L~Ls~n~~~~~~------p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 223 -----------PAIHHLPKLEELDLRGCTALRNY------PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp -----------GGGGGCTTCCEEECTTCTTCCBC------CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred -----------hhhccCCCCCEEECcCCcchhhh------HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 11357889999988887544432 3467789999999999999999999999999999999999
Q ss_pred CChhhHH
Q 003300 801 KCPILEN 807 (832)
Q Consensus 801 ~c~~L~~ 807 (832)
+|+.+..
T Consensus 286 ~n~~~~~ 292 (328)
T 4fcg_A 286 GCVNLSR 292 (328)
T ss_dssp TCTTCCC
T ss_pred CCCchhh
Confidence 9987654
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=1.8e-18 Score=201.70 Aligned_cols=122 Identities=25% Similarity=0.214 Sum_probs=74.4
Q ss_pred cccEEEecCcccccc----C-----CCcEEecCCCcccccc-ccCCCCceeEEEeCCcCcccccc-cccCCCcccEEecc
Q 003300 446 CLRALVIRQSLVIRL----S-----SSPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIR 514 (832)
Q Consensus 446 ~Lr~L~~~~~~~~~~----~-----~r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~ 514 (832)
.++.|.+++|.+... + +++|+|++|.++.+|+ .|.+|++|++|+|++|.|+.+|. .|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 566777766653221 1 3677777777776654 46667777777777777776654 46677777777777
Q ss_pred CccCccccCcccccccCCceeecCCccCcc-cccCCCCCCCCCccCCceeeCCccC
Q 003300 515 RCRNLKELPAGIGKLKNMRSLLNGETYSLK-YMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 515 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~-~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
+|......+..|+++++|++|++++|.... ..|..++++++|++|+ +.+|.+.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~--L~~N~l~ 186 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD--LSSNKIQ 186 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE--CCSSCCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc--ccCcccc
Confidence 765333223346677777777777764432 2445566667777666 4455443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=3.6e-17 Score=181.64 Aligned_cols=243 Identities=19% Similarity=0.215 Sum_probs=138.1
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
+.++.+++.++.+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++|......|..|.++++|++|++++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 345666677777776654 5777788888777755 5567777788888887776555555667777788888887775
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
.....+..+.++++|++|+ +.+|.+...... .+..+++|+.|+++.|
T Consensus 135 l~~~~~~~~~~l~~L~~L~--L~~N~l~~~~~~-------------------------------~~~~l~~L~~L~l~~~ 181 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELW--LRNNPIESIPSY-------------------------------AFNRVPSLMRLDLGEL 181 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEE--CCSCCCCEECTT-------------------------------TTTTCTTCCEEECCCC
T ss_pred CCccChhhhcccCCCCEEE--CCCCCcceeCHh-------------------------------HHhcCCcccEEeCCCC
Confidence 4433333467777777776 445443211111 1223334444444332
Q ss_pred cCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccceec
Q 003300 622 RVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLEL 701 (832)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l 701 (832)
......+ ...+..+++|+.|++++|....+| .+..+++|+.|+|++|.
T Consensus 182 ~~l~~i~-------------~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~------------------ 229 (452)
T 3zyi_A 182 KKLEYIS-------------EGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH------------------ 229 (452)
T ss_dssp TTCCEEC-------------TTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSC------------------
T ss_pred CCccccC-------------hhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCc------------------
Confidence 1100000 001222233333333333333333 23344555555555553
Q ss_pred cccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccc
Q 003300 702 RNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKL 781 (832)
Q Consensus 702 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 781 (832)
+.+.. +..+..+++|+.|+++++ .+.. ..+..+..+++|+.|+|++|. +
T Consensus 230 ------------l~~~~------------~~~~~~l~~L~~L~L~~n-~l~~-----~~~~~~~~l~~L~~L~L~~N~-l 278 (452)
T 3zyi_A 230 ------------FPEIR------------PGSFHGLSSLKKLWVMNS-QVSL-----IERNAFDGLASLVELNLAHNN-L 278 (452)
T ss_dssp ------------CSEEC------------GGGGTTCTTCCEEECTTS-CCCE-----ECTTTTTTCTTCCEEECCSSC-C
T ss_pred ------------CcccC------------cccccCccCCCEEEeCCC-cCce-----ECHHHhcCCCCCCEEECCCCc-C
Confidence 22211 112457788888877764 2332 233456778899999998876 6
Q ss_pred cCCCCC-CCCCCCcCeEEEcCCh
Q 003300 782 KALPDY-LLQTTTLQDLTIWKCP 803 (832)
Q Consensus 782 ~~lp~~-~~~l~~L~~L~l~~c~ 803 (832)
..+|.. +..+++|+.|++++||
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccChHHhccccCCCEEEccCCC
Confidence 777654 5668889999998887
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=4.5e-18 Score=187.92 Aligned_cols=180 Identities=20% Similarity=0.165 Sum_probs=91.5
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcc-cccccccCCCcc-------------cEEeccCccCccccCcccc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIE-RLPKTLCELYNL-------------QKLDIRRCRNLKELPAGIG 527 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~-~lp~~~~~l~~L-------------~~L~L~~~~~~~~lp~~l~ 527 (832)
+++|++++|.+..+|++++++++|++|++++|.+. .+|..++++.+| ++|++++|. +..+|..
T Consensus 13 L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~-- 89 (454)
T 1jl5_A 13 LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL-- 89 (454)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC--
T ss_pred chhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC--
Confidence 46677777777778877888888888888887776 677777777765 777777765 5555552
Q ss_pred cccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcc
Q 003300 528 KLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQL 607 (832)
Q Consensus 528 ~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l 607 (832)
.++|++|++++|... .+|.. +++|+.|+ +.+|.+.+ +..+. ++|+.+++.+.. +..+ . .+
T Consensus 90 -~~~L~~L~l~~n~l~-~lp~~---~~~L~~L~--l~~n~l~~-----l~~~~--~~L~~L~L~~n~-l~~l---p--~~ 149 (454)
T 1jl5_A 90 -PPHLESLVASCNSLT-ELPEL---PQSLKSLL--VDNNNLKA-----LSDLP--PLLEYLGVSNNQ-LEKL---P--EL 149 (454)
T ss_dssp -CTTCSEEECCSSCCS-SCCCC---CTTCCEEE--CCSSCCSC-----CCSCC--TTCCEEECCSSC-CSSC---C--CC
T ss_pred -cCCCCEEEccCCcCC-ccccc---cCCCcEEE--CCCCccCc-----ccCCC--CCCCEEECcCCC-CCCC---c--cc
Confidence 357777777777443 35543 35666666 44554332 11111 345555555432 1111 1 25
Q ss_pred cCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccC
Q 003300 608 YNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 608 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~ 683 (832)
..+++|+.|++++|.+...+. .+.+|+.|++++|....+| .+..+++|++|++++|.
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~------------------~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPD------------------LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCC------------------CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCcCcccCC------------------CcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence 666777777777766543211 1236666666666665555 35566666666666663
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=8.8e-18 Score=176.35 Aligned_cols=245 Identities=16% Similarity=0.110 Sum_probs=145.2
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCccccccc-ccCCCcccEEeccCccCcc--ccCcccccccCCceeecCC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDIRRCRNLK--ELPAGIGKLKNMRSLLNGE 539 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~l~~ 539 (832)
+.++.+++.++.+|..+. ++|++|++++|.++.+|.. |.++++|++|++++|.... ..|..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 456777777888887654 5788888888888877765 5788888888888876332 2255566778888888888
Q ss_pred ccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEE
Q 003300 540 TYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLE 619 (832)
Q Consensus 540 ~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 619 (832)
|. +..+|..+..+++|++|+ +.+|.+..... .. .+..+++|+.|+++
T Consensus 88 n~-i~~l~~~~~~l~~L~~L~--l~~n~l~~~~~--~~----------------------------~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 88 NG-VITMSSNFLGLEQLEHLD--FQHSNLKQMSE--FS----------------------------VFLSLRNLIYLDIS 134 (306)
T ss_dssp CS-EEEEEEEEETCTTCCEEE--CTTSEEESSTT--TT----------------------------TTTTCTTCCEEECT
T ss_pred Cc-cccChhhcCCCCCCCEEE--CCCCccccccc--ch----------------------------hhhhccCCCEEECC
Confidence 74 445666677777777777 44444321110 01 12233344444444
Q ss_pred EecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCC--CCchhccccCCcEEEEeccCCCCcCCCCCCcccc
Q 003300 620 FGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNI--FPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLE 697 (832)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~ 697 (832)
+|.+.... ...+..+++|+.|++++|.... +|..+..+++|++|+|++|..
T Consensus 135 ~n~l~~~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l------------- 187 (306)
T 2z66_A 135 HTHTRVAF--------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL------------- 187 (306)
T ss_dssp TSCCEECS--------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-------------
T ss_pred CCcCCccc--------------hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc-------------
Confidence 44322110 0122333444444444444332 455566666777777766631
Q ss_pred ceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecc
Q 003300 698 KLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRS 777 (832)
Q Consensus 698 ~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 777 (832)
.+.. +..+..+++|+.|+++++ .+... .+..+..+++|+.|++++
T Consensus 188 -----------------~~~~------------~~~~~~l~~L~~L~L~~N-~l~~~-----~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 188 -----------------EQLS------------PTAFNSLSSLQVLNMSHN-NFFSL-----DTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp -----------------CEEC------------TTTTTTCTTCCEEECTTS-CCSBC-----CSGGGTTCTTCCEEECTT
T ss_pred -----------------CCcC------------HHHhcCCCCCCEEECCCC-ccCcc-----ChhhccCcccCCEeECCC
Confidence 1110 011346677777777664 23322 222356788888899988
Q ss_pred cccccCCCCCCCCC-CCcCeEEEcCChh
Q 003300 778 CNKLKALPDYLLQT-TTLQDLTIWKCPI 804 (832)
Q Consensus 778 c~~l~~lp~~~~~l-~~L~~L~l~~c~~ 804 (832)
|......|..+..+ ++|+.|++++|+.
T Consensus 233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 233 NHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 87555566666666 4889999988864
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=5.5e-17 Score=179.45 Aligned_cols=244 Identities=18% Similarity=0.180 Sum_probs=134.0
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCccccc-ccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
+.++.+++.++.+|..+. .++++|+|++|.|+.++ ..|.++++|++|+|++|......+..|.++++|++|++++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 345566666777776664 56777777777777554 567777777777777766444444567777777777777774
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
.....+..+..+++|+.|+ +.+|.+...... .+..+++|+.|+++.|
T Consensus 124 l~~~~~~~~~~l~~L~~L~--L~~N~i~~~~~~-------------------------------~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELW--LRNNPIESIPSY-------------------------------AFNRIPSLRRLDLGEL 170 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEE--CCSCCCCEECTT-------------------------------TTTTCTTCCEEECCCC
T ss_pred CCeeCHhHhhccccCceee--CCCCcccccCHH-------------------------------HhhhCcccCEeCCCCC
Confidence 4333233466777777776 444443211111 1223334444444332
Q ss_pred cCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccceec
Q 003300 622 RVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLEL 701 (832)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l 701 (832)
....... ...+..+++|+.|++++|....+|. +..+++|+.|+|++|.
T Consensus 171 ~~l~~i~-------------~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~------------------ 218 (440)
T 3zyj_A 171 KRLSYIS-------------EGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNH------------------ 218 (440)
T ss_dssp TTCCEEC-------------TTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSC------------------
T ss_pred CCcceeC-------------cchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCc------------------
Confidence 2100000 0012222333333333333333332 3444555555555553
Q ss_pred cccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccc
Q 003300 702 RNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKL 781 (832)
Q Consensus 702 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 781 (832)
+.+.. +..+..+++|+.|+++++ .++.. .+..+..+++|+.|+|++|. +
T Consensus 219 ------------l~~~~------------~~~~~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L~~N~-l 267 (440)
T 3zyj_A 219 ------------LSAIR------------PGSFQGLMHLQKLWMIQS-QIQVI-----ERNAFDNLQSLVEINLAHNN-L 267 (440)
T ss_dssp ------------CCEEC------------TTTTTTCTTCCEEECTTC-CCCEE-----CTTSSTTCTTCCEEECTTSC-C
T ss_pred ------------cCccC------------hhhhccCccCCEEECCCC-ceeEE-----ChhhhcCCCCCCEEECCCCC-C
Confidence 22211 112456778888877664 23322 33456678888888888876 6
Q ss_pred cCCCCC-CCCCCCcCeEEEcCChh
Q 003300 782 KALPDY-LLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 782 ~~lp~~-~~~l~~L~~L~l~~c~~ 804 (832)
+.+|.. +..+++|+.|++++||-
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccChhHhccccCCCEEEcCCCCc
Confidence 666654 45688888888888873
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=1.5e-16 Score=185.55 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=90.0
Q ss_pred CcEEecCCCcccccc-ccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccC-cccccccCCceeecCC
Q 003300 463 SPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELP-AGIGKLKNMRSLLNGE 539 (832)
Q Consensus 463 r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~ 539 (832)
++|+|++|.|+.+|. .|.++++|++|+|++|.|+.+|+ .|.+|++|++|+|++|. +..+| ..|.++++|++|++++
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTT
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCC
Confidence 899999999999974 69999999999999999998865 68999999999999987 55565 4689999999999999
Q ss_pred ccCcccccCCCCCCCCCccCCceeeCCccCC
Q 003300 540 TYSLKYMPVGISKLTSLRTLDKFVVGGGIDG 570 (832)
Q Consensus 540 ~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~ 570 (832)
|......+..|+++++|++|+ +.+|.+..
T Consensus 134 N~l~~l~~~~~~~L~~L~~L~--Ls~N~l~~ 162 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKELN--VAHNLIQS 162 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEEE--CCSSCCCC
T ss_pred CcCCCCChhhhhcCcccCeec--cccCcccc
Confidence 965544444699999999999 77776543
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=178.19 Aligned_cols=250 Identities=18% Similarity=0.152 Sum_probs=169.6
Q ss_pred CCcEEecCCCcccccc-ccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccCcc-cccccCCceeecC
Q 003300 462 SSPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELPAG-IGKLKNMRSLLNG 538 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~l~ 538 (832)
.++|++++|.++.+|. .+.++++|++|++++|.++.+ |..|.++++|++|++++|. +..+|.. +.++++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECC
Confidence 4889999999999876 789999999999999999976 4569999999999999987 5556655 8899999999999
Q ss_pred CccCcccccC--CCCCCCCCccCCceeeCCc-cCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCc
Q 003300 539 ETYSLKYMPV--GISKLTSLRTLDKFVVGGG-IDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLR 615 (832)
Q Consensus 539 ~~~~~~~~p~--~l~~L~~L~~L~~~~~~~~-~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~ 615 (832)
+|.. +.+|. .+.++++|+.|+ +.+|. +....+. .+..+++|+.+++.+.. +.......+..+++|+.
T Consensus 133 ~n~l-~~l~~~~~~~~l~~L~~L~--l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~----l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 133 GNPY-KTLGETSLFSHLTKLQILR--VGNMDTFTKIQRK---DFAGLTFLEELEIDASD----LQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp TCCC-SSSCSSCSCTTCTTCCEEE--EEESSSCCEECTT---TTTTCCEEEEEEEEETT----CCEECTTTTTTCSEEEE
T ss_pred CCCC-cccCchhhhccCCCCcEEE--CCCCccccccCHH---HccCCCCCCEEECCCCC----cCccCHHHHhccccCCe
Confidence 9954 45665 688999999998 66653 3222222 34455566666666532 11222345778899999
Q ss_pred eEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCc-hh---ccccCCcEEEEeccCCCCcCCCC
Q 003300 616 LRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPK-WL---TSLTNLRNLYLRSCVKCEHLPPL 691 (832)
Q Consensus 616 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~l---~~l~~L~~L~L~~~~~~~~l~~l 691 (832)
|++++|.+...+.. .+..+++|+.|++++|....++. .+ ...+.++.++|+++..
T Consensus 203 L~l~~n~l~~~~~~--------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l------- 261 (353)
T 2z80_A 203 LILHMKQHILLLEI--------------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI------- 261 (353)
T ss_dssp EEEECSCSTTHHHH--------------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC-------
T ss_pred ecCCCCccccchhh--------------hhhhcccccEEECCCCccccccccccccccccchhhccccccccc-------
Confidence 99999986432211 11235799999999998766532 11 1345566666665531
Q ss_pred CCccccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccc
Q 003300 692 GKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLS 771 (832)
Q Consensus 692 ~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 771 (832)
.++.+... +..+..+++|+.|+++++ .++.++ ...+..+++|+
T Consensus 262 ------------------~~~~l~~l-------------~~~l~~l~~L~~L~Ls~N-~l~~i~-----~~~~~~l~~L~ 304 (353)
T 2z80_A 262 ------------------TDESLFQV-------------MKLLNQISGLLELEFSRN-QLKSVP-----DGIFDRLTSLQ 304 (353)
T ss_dssp ------------------CHHHHHHH-------------HHHHHTCTTCCEEECCSS-CCCCCC-----TTTTTTCTTCC
T ss_pred ------------------cCcchhhh-------------HHHHhcccCCCEEECCCC-CCCccC-----HHHHhcCCCCC
Confidence 11111100 011356778888888775 344322 12246788889
Q ss_pred eeeeccccc
Q 003300 772 SLEVRSCNK 780 (832)
Q Consensus 772 ~L~l~~c~~ 780 (832)
.|++++|+.
T Consensus 305 ~L~L~~N~~ 313 (353)
T 2z80_A 305 KIWLHTNPW 313 (353)
T ss_dssp EEECCSSCB
T ss_pred EEEeeCCCc
Confidence 999988873
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=2.3e-16 Score=179.58 Aligned_cols=255 Identities=18% Similarity=0.120 Sum_probs=182.9
Q ss_pred ccccEEEecCcccccc------CCCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccC
Q 003300 445 ACLRALVIRQSLVIRL------SSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRN 518 (832)
Q Consensus 445 ~~Lr~L~~~~~~~~~~------~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~ 518 (832)
.++++|.+.++.+... .+++|++++|.++.+|. .+++|++|+|++|.|+.+|. .+++|++|++++|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~- 112 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP- 112 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-
Confidence 4688999988774322 14899999999999987 57899999999999999987 67899999999986
Q ss_pred ccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCC
Q 003300 519 LKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSH 598 (832)
Q Consensus 519 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~ 598 (832)
+..+|. .+++|++|++++|. ++.+|.. +++|++|+ +.+|.+... +. .+.+|..+.+.+.. +..
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~--Ls~N~l~~l-~~------~~~~L~~L~L~~N~-l~~ 175 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELS--VSDNQLASL-PA------LPSELCKLWAYNNQ-LTS 175 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEE--CCSSCCSCC-CC------CCTTCCEEECCSSC-CSC
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEE--CcCCcCCCc-CC------ccCCCCEEECCCCC-CCC
Confidence 666776 57899999999994 5567764 47888888 667765432 11 12344555554422 111
Q ss_pred hhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEE
Q 003300 599 LDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLY 678 (832)
Q Consensus 599 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~ 678 (832)
++ ..+++|+.|++++|.+...+ ..+++|+.|.+++|....+|.. +++|+.|+
T Consensus 176 l~-------~~~~~L~~L~Ls~N~l~~l~------------------~~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~ 227 (622)
T 3g06_A 176 LP-------MLPSGLQELSVSDNQLASLP------------------TLPSELYKLWAYNNRLTSLPAL---PSGLKELI 227 (622)
T ss_dssp CC-------CCCTTCCEEECCSSCCSCCC------------------CCCTTCCEEECCSSCCSSCCCC---CTTCCEEE
T ss_pred Cc-------ccCCCCcEEECCCCCCCCCC------------------CccchhhEEECcCCcccccCCC---CCCCCEEE
Confidence 11 34588999999999865432 1247899999999998888853 58899999
Q ss_pred EeccCCCCcCCCCCCccccceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeecccccccccccccc
Q 003300 679 LRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRI 758 (832)
Q Consensus 679 L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 758 (832)
|++|. +..+| .. +.++..|++++|.+...+ ..+++|+.|+++++ .++.+
T Consensus 228 Ls~N~-L~~lp--~~-------l~~L~~L~Ls~N~L~~lp----------------~~~~~L~~L~Ls~N-~L~~l---- 276 (622)
T 3g06_A 228 VSGNR-LTSLP--VL-------PSELKELMVSGNRLTSLP----------------MLPSGLLSLSVYRN-QLTRL---- 276 (622)
T ss_dssp CCSSC-CSCCC--CC-------CTTCCEEECCSSCCSCCC----------------CCCTTCCEEECCSS-CCCSC----
T ss_pred ccCCc-cCcCC--CC-------CCcCcEEECCCCCCCcCC----------------cccccCcEEeCCCC-CCCcC----
Confidence 99994 44444 22 245556666677666432 16789999999886 45533
Q ss_pred ccccccCCCCccceeeecccccccCC
Q 003300 759 TRKENISIMPRLSSLEVRSCNKLKAL 784 (832)
Q Consensus 759 ~~~~~~~~l~~L~~L~l~~c~~l~~l 784 (832)
+..+..+++|+.|+|++|+.....
T Consensus 277 --p~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 277 --PESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp --CGGGGGSCTTCEEECCSCCCCHHH
T ss_pred --CHHHhhccccCEEEecCCCCCCcC
Confidence 345778999999999999854333
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=5.7e-17 Score=168.19 Aligned_cols=199 Identities=20% Similarity=0.193 Sum_probs=140.2
Q ss_pred CCcEEecCCCccccc-cccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCcccc-CcccccccCCceeecC
Q 003300 462 SSPFRLHSNLIREIP-KNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKEL-PAGIGKLKNMRSLLNG 538 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~l~ 538 (832)
.++|++++|.++.++ ..+.++++|++|++++|.++.+ |..|.++++|++|++++|..+..+ |..+..+++|++|+++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence 378888888888876 4578888899999988888866 677888888999999888645544 6678888889999988
Q ss_pred CccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEE
Q 003300 539 ETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRL 618 (832)
Q Consensus 539 ~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 618 (832)
+|......|..+.++++|++|+ +.+|.+....... +..+++|+.+++.+.. +.......+..+++|+.|++
T Consensus 114 ~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 114 RCGLQELGPGLFRGLAALQYLY--LQDNALQALPDDT---FRDLGNLTHLFLHGNR----ISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTT---TTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEEC
T ss_pred CCcCCEECHhHhhCCcCCCEEE--CCCCcccccCHhH---hccCCCccEEECCCCc----ccccCHHHhcCccccCEEEC
Confidence 8866655566788888888888 6666654433322 3444556666665432 11222234666778888888
Q ss_pred EEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCc-hhccccCCcEEEEeccC
Q 003300 619 EFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPK-WLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~L~~~~ 683 (832)
++|.+.... ...+..+++|+.|++++|....+|. .+..+++|+.|+|++|.
T Consensus 185 ~~n~l~~~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 185 HQNRVAHVH--------------PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSSCCCEEC--------------TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCcccccC--------------HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 877754321 1245566788888888887777664 46678888888888875
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=7.8e-19 Score=196.18 Aligned_cols=342 Identities=18% Similarity=0.101 Sum_probs=205.4
Q ss_pred HHHHhhcccccEEEecCccccc-------------cCCCcEEecCCCcccc-cccc-CCCC----ceeEEEeCCcCcc--
Q 003300 438 RKLFSKLACLRALVIRQSLVIR-------------LSSSPFRLHSNLIREI-PKNV-GKLI----HLRYLNLSELGIE-- 496 (832)
Q Consensus 438 ~~~f~~~~~Lr~L~~~~~~~~~-------------~~~r~L~L~~n~l~~l-p~~l-~~l~----~L~~L~Ls~~~i~-- 496 (832)
...|..+++|++|.+.++.+.. .-+++|++++|.++.. +..+ ..+. +|++|++++|.++
T Consensus 21 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 4457788899999988876421 1248899999887652 2222 2344 6999999999887
Q ss_pred ---cccccccCCCcccEEeccCccCccccCccc-----ccccCCceeecCCccCccc----ccCCCCCCCCCccCCceee
Q 003300 497 ---RLPKTLCELYNLQKLDIRRCRNLKELPAGI-----GKLKNMRSLLNGETYSLKY----MPVGISKLTSLRTLDKFVV 564 (832)
Q Consensus 497 ---~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l-----~~l~~L~~L~l~~~~~~~~----~p~~l~~L~~L~~L~~~~~ 564 (832)
.+|..+.++++|++|++++|......+..+ ...++|++|++++|..... ++..+..+++|++|+ +.
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~--L~ 178 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT--VS 178 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE--CC
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE--Cc
Confidence 457888889999999999887443323222 2356799999998865432 344566678888888 55
Q ss_pred CCccCCCCccCcc-ccc-cCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHh
Q 003300 565 GGGIDGSNTCRLE-SLK-NLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLL 642 (832)
Q Consensus 565 ~~~~~~~~~~~l~-~l~-~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 642 (832)
+|.+.......+. .+. .+.+|+.+++.+..-...........+..+++|+.|++++|.+... ....+.
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~----------~~~~l~ 248 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV----------GMAELC 248 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH----------HHHHHH
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH----------HHHHHH
Confidence 6654321111111 111 2446777777765322221112233466788999999998875311 111122
Q ss_pred hc-CCCCCCccEEEEEeeCCCC-----CCchhccccCCcEEEEeccCCCCcCC-CCCCccccceeccccccceeeCcccc
Q 003300 643 KT-LQPPLSVEKLGIILYGGNI-----FPKWLTSLTNLRNLYLRSCVKCEHLP-PLGKLPLEKLELRNLKSVKRVGNEFL 715 (832)
Q Consensus 643 ~~-l~~~~~L~~L~l~~~~~~~-----~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~lpL~~l~l~~l~~L~~~~~~~~ 715 (832)
.. ....++|+.|++++|.... ++..+..+++|++|+|++|......+ .+... -.-....++.|++.+|.+.
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET--LLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH--HTSTTCCCCEEECTTSCCB
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH--hccCCccceeeEcCCCCCc
Confidence 22 2357899999999987765 56667778999999999985211000 00000 0000124444555555544
Q ss_pred CCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccC-CCCccceeeeccccccc-----CCCCCCC
Q 003300 716 GTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENIS-IMPRLSSLEVRSCNKLK-----ALPDYLL 789 (832)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~-----~lp~~~~ 789 (832)
+.... ..+..+..+++|++|+++++ .+......... ..+. ..++|+.|++++|. ++ .+|..+.
T Consensus 327 ~~~~~--------~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~-~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 327 AACCS--------HFSSVLAQNRFLLELQISNN-RLEDAGVRELC-QGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLL 395 (461)
T ss_dssp GGGHH--------HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH-HHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHH
T ss_pred hHHHH--------HHHHHHhhCCCccEEEccCC-ccccccHHHHH-HHHcCCCCceEEEECCCCC-CChhhHHHHHHHHH
Confidence 32100 00111345689999988886 44433211000 1111 26799999999987 55 5777676
Q ss_pred CCCCcCeEEEcCChh
Q 003300 790 QTTTLQDLTIWKCPI 804 (832)
Q Consensus 790 ~l~~L~~L~l~~c~~ 804 (832)
.+++|++|++++|+.
T Consensus 396 ~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 396 ANHSLRELDLSNNCL 410 (461)
T ss_dssp HCCCCCEEECCSSSC
T ss_pred hCCCccEEECCCCCC
Confidence 789999999999965
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=1.5e-17 Score=174.90 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=41.9
Q ss_pred CCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCChh
Q 003300 736 AFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCPI 804 (832)
Q Consensus 736 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 804 (832)
.+++|+.|+++++ .++.++ ..+. ++|+.|++++|. ++.+|. +..+++|++|++++|+.
T Consensus 251 ~l~~L~~L~Ls~N-~l~~ip------~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 251 WPSQLNSLNLSFT-GLKQVP------KGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCTTCCEEECTTS-CCSSCC------SSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCTT
T ss_pred hcCCCCEEECCCC-ccChhh------hhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCCC
Confidence 4677888877765 344322 2222 789999998876 777777 77789999999999874
No 63
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=1.6e-16 Score=136.55 Aligned_cols=80 Identities=21% Similarity=0.440 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHhhcchhhHHHHHHH
Q 003300 9 LLEQLISVAADEVKQQVRLVTGVRQEVKKLTSNLQAIRAVLEDAEKR--QMQHDKAVTFWLDQLKDASYDMEDVLEEWTT 86 (832)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~~wl~~lr~~~~d~ed~ld~~~~ 86 (832)
+|+.+++++.+++.+|+.++.||++++++|+++|++|++||.+|+.+ +.. +++++.|+++||+++||+||+||+|.+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~-d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQL-DSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999987 445 899999999999999999999999999
Q ss_pred HHH
Q 003300 87 ARL 89 (832)
Q Consensus 87 ~~~ 89 (832)
+..
T Consensus 81 ~~~ 83 (115)
T 3qfl_A 81 QVD 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 874
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=3.3e-17 Score=172.16 Aligned_cols=245 Identities=20% Similarity=0.218 Sum_probs=171.5
Q ss_pred hcccccEEEecCccccccC------CCcEEecCCCccc--cccccC-------CCCceeEEEeCCcCcc-cccccc--cC
Q 003300 443 KLACLRALVIRQSLVIRLS------SSPFRLHSNLIRE--IPKNVG-------KLIHLRYLNLSELGIE-RLPKTL--CE 504 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~~~~~------~r~L~L~~n~l~~--lp~~l~-------~l~~L~~L~Ls~~~i~-~lp~~~--~~ 504 (832)
..++|+.|.+.++.+ ..+ .++|++++|.+.. +|..+. ++++|++|++++|.++ .+|..+ ..
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred cCCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 455666666666655 221 3678888888754 565555 7889999999999988 678776 88
Q ss_pred CCcccEEeccCccCccccCcccccc-----cCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCcccc
Q 003300 505 LYNLQKLDIRRCRNLKELPAGIGKL-----KNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESL 579 (832)
Q Consensus 505 l~~L~~L~L~~~~~~~~lp~~l~~l-----~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l 579 (832)
+++|++|++++|.... +|..++.+ ++|++|++++|......|..++++++|++|+ +.+|.+.+.. ..+..+
T Consensus 120 l~~L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~-~~~~~~ 195 (312)
T 1wwl_A 120 GPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD--LSDNPELGER-GLISAL 195 (312)
T ss_dssp SCCCSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE--CCSCTTCHHH-HHHHHS
T ss_pred CCCccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE--CCCCCcCcch-HHHHHH
Confidence 9999999999987444 48777777 8999999999976665557888999999998 6666543210 011122
Q ss_pred --ccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEE
Q 003300 580 --KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGII 657 (832)
Q Consensus 580 --~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 657 (832)
..+++|+.+++.+.. +..........+..+++|+.|++++|.+....+ ...+..+++|+.|+++
T Consensus 196 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAG-------------APSCDWPSQLNSLNLS 261 (312)
T ss_dssp CTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-------------CSCCCCCTTCCEEECT
T ss_pred HhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-------------hhhhhhcCCCCEEECC
Confidence 556677777777643 333334444556678999999999998764321 1234456899999999
Q ss_pred eeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccceeccccccceeeCccccC
Q 003300 658 LYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLG 716 (832)
Q Consensus 658 ~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~ 716 (832)
+|....+|.++. ++|++|+|++|. ++.+|.+..++ +++.|++.+|.+.+
T Consensus 262 ~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~-------~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 262 FTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPSPDELP-------QVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCCSSCCSSCC--SEEEEEECCSSC-CCSCCCTTTSC-------EEEEEECTTCTTTC
T ss_pred CCccChhhhhcc--CCceEEECCCCC-CCCChhHhhCC-------CCCEEeccCCCCCC
Confidence 999999998876 899999999995 44445555544 44445555666543
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=3.4e-16 Score=162.27 Aligned_cols=195 Identities=16% Similarity=0.133 Sum_probs=126.0
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCccccc-ccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
++++.+++.++.+|..+ .++|++|++++|.++.+| ..|.++++|++|++++|......|..|..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 57888999999999765 579999999999999876 568999999999999988665558889999999999999996
Q ss_pred Ccccc-cCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEE
Q 003300 542 SLKYM-PVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEF 620 (832)
Q Consensus 542 ~~~~~-p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 620 (832)
.++.+ |..+..+++|++|+ +.++.+....+.. +..+++|+.+++.+..- .......+..+++|+.|++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLH--LDRCGLQELGPGL---FRGLAALQYLYLQDNAL----QALPDDTFRDLGNLTHLFLHG 162 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEE--CTTSCCCCCCTTT---TTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCS
T ss_pred CccccCHHHhcCCcCCCEEE--CCCCcCCEECHhH---hhCCcCCCEEECCCCcc----cccCHhHhccCCCccEEECCC
Confidence 34544 67789999999998 6666654322222 33344444444443211 111112344555566666555
Q ss_pred ecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCC-CchhccccCCcEEEEecc
Q 003300 621 GRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIF-PKWLTSLTNLRNLYLRSC 682 (832)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~L~~~ 682 (832)
|.+...+. ..+..+++|+.|++++|....+ |.++..+++|+.|+|++|
T Consensus 163 n~l~~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 163 NRISSVPE--------------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp SCCCEECT--------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcccccCH--------------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 54432111 1233344555555555544333 444445555555555555
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=170.72 Aligned_cols=195 Identities=21% Similarity=0.212 Sum_probs=110.8
Q ss_pred CcEEecCCCccccc-cccCCCCceeEEEeCCcCccccc-ccccCCCcccEEeccCccCccccC-cccccccCCceeecCC
Q 003300 463 SPFRLHSNLIREIP-KNVGKLIHLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCRNLKELP-AGIGKLKNMRSLLNGE 539 (832)
Q Consensus 463 r~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~ 539 (832)
++|+|++|.++.++ ..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|. +..+| ..|..+++|++|++++
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 145 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRN 145 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCS
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCC
Confidence 66677777766654 45666777777777777766554 456667777777777765 33343 3466677777777777
Q ss_pred ccCcccccCCCCCCCCCccCCceeeCCc-cCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEE
Q 003300 540 TYSLKYMPVGISKLTSLRTLDKFVVGGG-IDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRL 618 (832)
Q Consensus 540 ~~~~~~~p~~l~~L~~L~~L~~~~~~~~-~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 618 (832)
|......+..+.++++|+.|+ +.++. +..... ..+..+.+|+.+++.+.. +..+. .+..+++|+.|++
T Consensus 146 N~i~~~~~~~~~~l~~L~~L~--l~~~~~l~~i~~---~~~~~l~~L~~L~L~~n~-l~~~~-----~~~~l~~L~~L~L 214 (440)
T 3zyj_A 146 NPIESIPSYAFNRIPSLRRLD--LGELKRLSYISE---GAFEGLSNLRYLNLAMCN-LREIP-----NLTPLIKLDELDL 214 (440)
T ss_dssp CCCCEECTTTTTTCTTCCEEE--CCCCTTCCEECT---TTTTTCSSCCEEECTTSC-CSSCC-----CCTTCSSCCEEEC
T ss_pred CcccccCHHHhhhCcccCEeC--CCCCCCcceeCc---chhhcccccCeecCCCCc-Ccccc-----ccCCCcccCEEEC
Confidence 654433334566667777666 33322 111111 123344455555554432 11111 2455667777777
Q ss_pred EEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCC-CchhccccCCcEEEEeccC
Q 003300 619 EFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIF-PKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~L~~~~ 683 (832)
++|.+....+ ..+..+++|+.|++++|....+ |..+..+++|+.|+|++|.
T Consensus 215 s~N~l~~~~~--------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 215 SGNHLSAIRP--------------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp TTSCCCEECT--------------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred CCCccCccCh--------------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 7666543221 2445566777777777666554 3445567777777777774
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=7.7e-16 Score=170.89 Aligned_cols=196 Identities=16% Similarity=0.115 Sum_probs=104.2
Q ss_pred CcEEecCCCcccc-ccccCCCCceeEEEeCCcCccccc-ccccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
++|+|++|.++.+ |..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|......+..|..+++|++|++++|
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 5666666666654 345666666666666666666443 45666666666666666533222233566666666666666
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCc-cCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEE
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGG-IDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLE 619 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~-~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 619 (832)
......+..+.++++|+.|+ +.++. +..... ..+..+.+|+.+++.+..- ..+ ..+..+++|+.|+++
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~--l~~~~~l~~i~~---~~~~~l~~L~~L~L~~n~l-~~~-----~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLD--LGELKKLEYISE---GAFEGLFNLKYLNLGMCNI-KDM-----PNLTPLVGLEELEMS 226 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEE--CCCCTTCCEECT---TTTTTCTTCCEEECTTSCC-SSC-----CCCTTCTTCCEEECT
T ss_pred CcceeCHhHHhcCCcccEEe--CCCCCCccccCh---hhccCCCCCCEEECCCCcc-ccc-----ccccccccccEEECc
Confidence 44333333466666666666 33321 111111 1233344444554444221 111 124455666666666
Q ss_pred EecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCC-CchhccccCCcEEEEeccC
Q 003300 620 FGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIF-PKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~L~~~~ 683 (832)
+|.+....+ ..+..+++|+.|++++|....+ |..+..+++|+.|+|++|.
T Consensus 227 ~N~l~~~~~--------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 227 GNHFPEIRP--------------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TSCCSEECG--------------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcCcccCc--------------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 665543221 1344556666666666665444 4445566666666666663
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=7.7e-17 Score=169.78 Aligned_cols=259 Identities=14% Similarity=0.119 Sum_probs=150.1
Q ss_pred cEEecCCCccccccc-cCCCCceeEEEeCCcCccccc-ccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 464 PFRLHSNLIREIPKN-VGKLIHLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 464 ~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
.++++.+.+...+.. +..+++|++|+|++|.++.++ ..|.++++|++|++++|..... +. +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE-ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh-hhhcCCCCEEECcCCc
Confidence 345666666654443 456778999999999998765 6789999999999999875443 33 8899999999999984
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
++.+| .+++|+.|+ +.+|.+.... ...+++|+.|++++|
T Consensus 92 -l~~l~----~~~~L~~L~--l~~n~l~~~~----------------------------------~~~~~~L~~L~l~~N 130 (317)
T 3o53_A 92 -VQELL----VGPSIETLH--AANNNISRVS----------------------------------CSRGQGKKNIYLANN 130 (317)
T ss_dssp -EEEEE----ECTTCCEEE--CCSSCCSEEE----------------------------------ECCCSSCEEEECCSS
T ss_pred -ccccc----CCCCcCEEE--CCCCccCCcC----------------------------------ccccCCCCEEECCCC
Confidence 33443 236777776 4444422100 112356777777777
Q ss_pred cCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCC-Cchh-ccccCCcEEEEeccCCCCcCCCCCCccccce
Q 003300 622 RVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIF-PKWL-TSLTNLRNLYLRSCVKCEHLPPLGKLPLEKL 699 (832)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~l-~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l 699 (832)
.+....+ ..+..+++|+.|++++|....+ |..+ ..+++|++|+|++|. +..++....
T Consensus 131 ~l~~~~~--------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~------ 189 (317)
T 3o53_A 131 KITMLRD--------------LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV------ 189 (317)
T ss_dssp CCCSGGG--------------BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCC------
T ss_pred CCCCccc--------------hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccccc------
Confidence 6543221 1334456777777777766554 3333 356777777777774 222222222
Q ss_pred eccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccc
Q 003300 700 ELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCN 779 (832)
Q Consensus 700 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (832)
+.+++.|++.+|.+.+.. +.+..+++|+.|+++++ .++.+ +..+..+++|+.|++++|+
T Consensus 190 -l~~L~~L~Ls~N~l~~l~-------------~~~~~l~~L~~L~L~~N-~l~~l------~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 190 -FAKLKTLDLSSNKLAFMG-------------PEFQSAAGVTWISLRNN-KLVLI------EKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -CTTCCEEECCSSCCCEEC-------------GGGGGGTTCSEEECTTS-CCCEE------CTTCCCCTTCCEEECTTCC
T ss_pred -cccCCEEECCCCcCCcch-------------hhhcccCcccEEECcCC-cccch------hhHhhcCCCCCEEEccCCC
Confidence 233333444444443321 12345566666666554 33322 2234455666666666665
Q ss_pred cc-cCCCCCCCCCCCcCeEEEcCChhhHH
Q 003300 780 KL-KALPDYLLQTTTLQDLTIWKCPILEN 807 (832)
Q Consensus 780 ~l-~~lp~~~~~l~~L~~L~l~~c~~L~~ 807 (832)
.. ..+|..+..++.|+.|++++|+.++.
T Consensus 249 ~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ccCcCHHHHHhccccceEEECCCchhccC
Confidence 33 23444444556666666665555544
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=2e-16 Score=165.92 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=85.2
Q ss_pred CCcEEecCCCccccccc-cCCCCceeEEEeCCcCcccc---cccccCCCcccEEeccCccCccccCcccccccCCceeec
Q 003300 462 SSPFRLHSNLIREIPKN-VGKLIHLRYLNLSELGIERL---PKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLN 537 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~~~i~~l---p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l 537 (832)
.++|++++|.++.+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++|. +..+|..+..+++|++|++
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEEC
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEEC
Confidence 48899999999999876 68999999999999998755 6778889999999999986 5678888999999999999
Q ss_pred CCccCccccc-CCCCCCCCCccCCceeeCCcc
Q 003300 538 GETYSLKYMP-VGISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 538 ~~~~~~~~~p-~~l~~L~~L~~L~~~~~~~~~ 568 (832)
++|......+ ..+.++++|+.|+ +.+|.+
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~--l~~n~l 138 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLD--ISHTHT 138 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEE--CTTSCC
T ss_pred CCCcccccccchhhhhccCCCEEE--CCCCcC
Confidence 9985443322 4688889999988 555554
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=3.6e-16 Score=174.42 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=63.8
Q ss_pred ccccccccCCC----CceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccc
Q 003300 472 IREIPKNVGKL----IHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYM 546 (832)
Q Consensus 472 l~~lp~~l~~l----~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~ 546 (832)
...+|..+..+ ++|++|+|++|.++.+ |..|.++++|++|+|++|......| +..+++|++|++++|. ++.+
T Consensus 19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l 95 (487)
T 3oja_A 19 DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQEL 95 (487)
T ss_dssp TTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEE
T ss_pred hhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCC
Confidence 33455555444 4899999999999966 4689999999999999988554444 8899999999999984 3444
Q ss_pred cCCCCCCCCCccCCceeeCCc
Q 003300 547 PVGISKLTSLRTLDKFVVGGG 567 (832)
Q Consensus 547 p~~l~~L~~L~~L~~~~~~~~ 567 (832)
|. .++|+.|+ +.+|.
T Consensus 96 ~~----~~~L~~L~--L~~N~ 110 (487)
T 3oja_A 96 LV----GPSIETLH--AANNN 110 (487)
T ss_dssp EE----CTTCCEEE--CCSSC
T ss_pred CC----CCCcCEEE--CcCCc
Confidence 43 26777776 44444
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=2.2e-15 Score=155.93 Aligned_cols=192 Identities=18% Similarity=0.110 Sum_probs=112.7
Q ss_pred hcccccEEEecCccccccC------CCcEEecCCCcccc-ccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccC
Q 003300 443 KLACLRALVIRQSLVIRLS------SSPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRR 515 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~~~~~------~r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~ 515 (832)
++++++.+.+.++.+...+ .++|++++|.++.+ |..+..+++|++|+|++|.|+.+|.. ..+++|++|++++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS
T ss_pred ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC
Confidence 4455666666554432211 25666666666554 34456666666666666666655543 5566666666666
Q ss_pred ccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCC
Q 003300 516 CRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGN 595 (832)
Q Consensus 516 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~ 595 (832)
|. +..+|..+..+++|++|++++|......|..+.++++|+.|+ +.+|.+...
T Consensus 87 N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~--L~~N~l~~~------------------------ 139 (290)
T 1p9a_G 87 NQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY--LKGNELKTL------------------------ 139 (290)
T ss_dssp SC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE--CTTSCCCCC------------------------
T ss_pred Cc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE--CCCCCCCcc------------------------
Confidence 54 445565566666666666666644333334455666666665 434432211
Q ss_pred CCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCc
Q 003300 596 VSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLR 675 (832)
Q Consensus 596 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~ 675 (832)
....+..+++|+.|++++|.+...+.. .+..+++|+.|++++|....+|..+..+++|+
T Consensus 140 -------~~~~~~~l~~L~~L~L~~N~l~~l~~~--------------~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 140 -------PPGLLTPTPKLEKLSLANNNLTELPAG--------------LLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198 (290)
T ss_dssp -------CTTTTTTCTTCCEEECTTSCCSCCCTT--------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCS
T ss_pred -------ChhhcccccCCCEEECCCCcCCccCHH--------------HhcCcCCCCEEECCCCcCCccChhhcccccCC
Confidence 111244556677777777765543322 34456778888888888878888888788888
Q ss_pred EEEEeccC
Q 003300 676 NLYLRSCV 683 (832)
Q Consensus 676 ~L~L~~~~ 683 (832)
.|+|++|+
T Consensus 199 ~l~L~~Np 206 (290)
T 1p9a_G 199 FAFLHGNP 206 (290)
T ss_dssp EEECCSCC
T ss_pred eEEeCCCC
Confidence 88888885
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=3.7e-15 Score=152.97 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=66.1
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCc-ccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~~ 540 (832)
+.++++++.++.+|..+. .+|++|++++|.++.+|. .|.++++|++|++++|. +..+|. .|..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC
Confidence 567777777777776554 567777777777776654 57777777777777765 334443 3466777777777777
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCcc
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~~ 568 (832)
......+..+.++++|+.|+ +.+|.+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~--l~~n~l 121 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELR--LDRNQL 121 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEE--CCSSCC
T ss_pred cCCcCCHhHcccccCCCEEE--CCCCcc
Confidence 54433334456777777776 445543
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=1.6e-16 Score=167.42 Aligned_cols=243 Identities=14% Similarity=0.095 Sum_probs=146.6
Q ss_pred CCcEEecCCCccccc-cccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 462 SSPFRLHSNLIREIP-KNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
+++|++++|.++.++ ..++++++|++|+|++|.++.+++ +..+++|++|++++|. +..+| .+++|++|++++|
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n 109 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANN 109 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCSS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEECCCC
Confidence 366777888887765 578888888888888888886665 8888888888888876 44443 3478888888888
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcc-cCCCCCCceEEE
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQL-YNQQNLLRLRLE 619 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~ 619 (832)
......+. .+++|+.|+ +.+|.+....+..+ ..+++|+.+++++.. +.......+ ..+++|+.|+++
T Consensus 110 ~l~~~~~~---~~~~L~~L~--l~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~----l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 110 NISRVSCS---RGQGKKNIY--LANNKITMLRDLDE---GCRSRVQYLDLKLNE----IDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCSEEEEC---CCSSCEEEE--CCSSCCCSGGGBCT---GGGSSEEEEECTTSC----CCEEEGGGGGGGTTTCCEEECT
T ss_pred ccCCcCcc---ccCCCCEEE--CCCCCCCCccchhh---hccCCCCEEECCCCC----CCcccHHHHhhccCcCCEEECC
Confidence 55443332 356788887 66666544333233 333444455554422 111111122 345677777777
Q ss_pred EecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccce
Q 003300 620 FGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKL 699 (832)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l 699 (832)
+|.+... .....+++|+.|++++|....+|..+..+++|+.|+|++|.. ..+|
T Consensus 178 ~N~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l-~~l~---------- 230 (317)
T 3o53_A 178 YNFIYDV----------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIE---------- 230 (317)
T ss_dssp TSCCCEE----------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC-CEEC----------
T ss_pred CCcCccc----------------ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc-cchh----------
Confidence 7665321 122235667777777776666666666667777777776641 1111
Q ss_pred eccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccc
Q 003300 700 ELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCN 779 (832)
Q Consensus 700 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (832)
..+..+++|+.|++++++ +.. ...+..+..+++|+.|++.+|+
T Consensus 231 --------------------------------~~~~~l~~L~~L~l~~N~-~~~----~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 231 --------------------------------KALRFSQNLEHFDLRGNG-FHC----GTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp --------------------------------TTCCCCTTCCEEECTTCC-CBH----HHHHHHHHTCHHHHHHHHHHHH
T ss_pred --------------------------------hHhhcCCCCCEEEccCCC-ccC----cCHHHHHhccccceEEECCCch
Confidence 113456777777776642 220 0112334567788888888777
Q ss_pred cccCCCC
Q 003300 780 KLKALPD 786 (832)
Q Consensus 780 ~l~~lp~ 786 (832)
.++..+.
T Consensus 274 ~l~~~~~ 280 (317)
T 3o53_A 274 KLTGQNE 280 (317)
T ss_dssp HHHSSSS
T ss_pred hccCCch
Confidence 6665443
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=4.9e-18 Score=189.70 Aligned_cols=331 Identities=18% Similarity=0.132 Sum_probs=190.4
Q ss_pred ccccEEEecCccccc--------c--CCCcEEecCCCcc-----ccccccCCCCceeEEEeCCcCccc-cccc-ccCCC-
Q 003300 445 ACLRALVIRQSLVIR--------L--SSSPFRLHSNLIR-----EIPKNVGKLIHLRYLNLSELGIER-LPKT-LCELY- 506 (832)
Q Consensus 445 ~~Lr~L~~~~~~~~~--------~--~~r~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~~~i~~-lp~~-~~~l~- 506 (832)
++|+.|.+.++.+.. . -+++|++++|.++ .++..+..+++|++|++++|.+.. .+.. +..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 567888887765311 1 1488888888877 457777888889999999888763 2222 23344
Q ss_pred ---cccEEeccCccCcc----ccCcccccccCCceeecCCccCcccccC----C-CCCCCCCccCCceeeCCccCCCCcc
Q 003300 507 ---NLQKLDIRRCRNLK----ELPAGIGKLKNMRSLLNGETYSLKYMPV----G-ISKLTSLRTLDKFVVGGGIDGSNTC 574 (832)
Q Consensus 507 ---~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~~~~p~----~-l~~L~~L~~L~~~~~~~~~~~~~~~ 574 (832)
+|++|++++|.... .+|..+..+++|++|++++|......+. . ....++|++|+ +.++.+......
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~--L~~n~l~~~~~~ 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ--LEYCSLSAASCE 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE--CTTSCCBGGGHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE--CCCCCCCHHHHH
Confidence 68899998887542 4577788888899999988864332221 1 23356788887 556654332211
Q ss_pred C-ccccccCCcCCceeecCCCCCCChhhhhhhcc-----cCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCC
Q 003300 575 R-LESLKNLQLLRECGIEGLGNVSHLDEAERLQL-----YNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPP 648 (832)
Q Consensus 575 ~-l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 648 (832)
. ...+..+++|+.+++.+.. +.......+ ...++|+.|++++|.+.... ...+...+..+
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----------~~~l~~~l~~~ 226 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNND----INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN----------CRDLCGIVASK 226 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSB----CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH----------HHHHHHHHHHC
T ss_pred HHHHHHhhCCCCCEEECcCCC----cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH----------HHHHHHHHHhC
Confidence 1 1224445667777766533 111111111 13558888888887664321 11223334456
Q ss_pred CCccEEEEEeeCCCCC------CchhccccCCcEEEEeccCCCCcCCCCCCccccceeccccccceeeCccccCCCCCCC
Q 003300 649 LSVEKLGIILYGGNIF------PKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLGTEESSE 722 (832)
Q Consensus 649 ~~L~~L~l~~~~~~~~------p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~~~~~~~ 722 (832)
++|+.|++++|..... +.....+++|++|++++|.. +... ...++-..-.+.+++.|++.+|.+.......
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~- 303 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKG-CGDLCRVLRAKESLKELSLAGNELGDEGARL- 303 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHH-HHHHHHHHHHCTTCCEEECTTCCCHHHHHHH-
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CHHH-HHHHHHHHhhCCCcceEECCCCCCchHHHHH-
Confidence 7888888887764321 11222577888888888841 1100 0012211223566777888777664321000
Q ss_pred CCCCCCCCCCC-ccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCC-C----CCCC-CCCCcC
Q 003300 723 DGPSSSSSSPS-VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKAL-P----DYLL-QTTTLQ 795 (832)
Q Consensus 723 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p----~~~~-~l~~L~ 795 (832)
.... ....++|++|++++|. +...... ..+..+..+++|+.|++++|. +... + ..+. ..++|+
T Consensus 304 -------l~~~l~~~~~~L~~L~L~~n~-l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~ 373 (461)
T 1z7x_W 304 -------LCETLLEPGCQLESLWVKSCS-FTAACCS-HFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLR 373 (461)
T ss_dssp -------HHHHHTSTTCCCCEEECTTSC-CBGGGHH-HHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCC
T ss_pred -------HHHHhccCCccceeeEcCCCC-CchHHHH-HHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceE
Confidence 0000 0123689999888873 4332110 012234567899999999986 4432 1 1122 267999
Q ss_pred eEEEcCChh
Q 003300 796 DLTIWKCPI 804 (832)
Q Consensus 796 ~L~l~~c~~ 804 (832)
+|++++|..
T Consensus 374 ~L~L~~n~i 382 (461)
T 1z7x_W 374 VLWLADCDV 382 (461)
T ss_dssp EEECTTSCC
T ss_pred EEECCCCCC
Confidence 999999964
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=2.2e-15 Score=155.36 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=55.3
Q ss_pred CcEEecCCCcccccc-ccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
++|++++|.++.++. .+.++++|++|++++|.++.++. .|.++++|++|++++|......|..+.++++|++|++++|
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 566666666665544 45566666666666666654443 4556666666666665543333445566666666666665
Q ss_pred cCcccccCCCCCCCCCccCC
Q 003300 541 YSLKYMPVGISKLTSLRTLD 560 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~ 560 (832)
......+..++++++|++|+
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 111 NLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CCCCSTTCCCTTCTTCCEEE
T ss_pred CccccCchhcccCCCCCEEE
Confidence 44333333455566666655
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=5.3e-15 Score=152.50 Aligned_cols=149 Identities=20% Similarity=0.188 Sum_probs=71.2
Q ss_pred EecCCCccccccccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcc
Q 003300 466 RLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLK 544 (832)
Q Consensus 466 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 544 (832)
+..+..+..+|..+. ++|++|++++|.++.++. .|.++++|++|++++|......+..+..+++|++|++++|....
T Consensus 13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 13 QCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 334444555555443 356666666666655443 45556666666666654333333345556666666666654443
Q ss_pred cccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCC
Q 003300 545 YMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVV 624 (832)
Q Consensus 545 ~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 624 (832)
..|..+.++++|+.|+ +.+|.+....... +..+++|+.+++.+..-.. . .....+..+++|+.|++++|.+.
T Consensus 91 ~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~-~--~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 91 LALGAFSGLSSLQKLV--AVETNLASLENFP---IGHLKTLKELNVAHNLIQS-F--KLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp ECTTTTTTCTTCCEEE--CTTSCCCCSTTCC---CTTCTTCCEEECCSSCCCC-C--CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cChhhhcCCccccEEE--CCCCCccccCchh---cccCCCCCEEECcCCccce-e--cCchhhccCCCCCEEECCCCCCC
Confidence 3334455566666655 4444433222212 2333344444444321100 0 00113445556666666655544
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=3.7e-15 Score=150.02 Aligned_cols=97 Identities=19% Similarity=0.314 Sum_probs=65.5
Q ss_pred EecCCCccccccccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCc-ccccccCCceeecCC-ccC
Q 003300 466 RLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNGE-TYS 542 (832)
Q Consensus 466 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~-~~~ 542 (832)
++..+.++.+|. +. .+|++|++++|.++.+|. .|.++++|++|++++|..+..+|. .|..+++|++|++++ |..
T Consensus 17 ~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 17 RVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp EEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred eeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 333444777776 43 378888888888887765 677888888888888754555553 677888888888887 533
Q ss_pred ccccc-CCCCCCCCCccCCceeeCCcc
Q 003300 543 LKYMP-VGISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 543 ~~~~p-~~l~~L~~L~~L~~~~~~~~~ 568 (832)
+.+| ..+.++++|+.|+ +.+|.+
T Consensus 94 -~~i~~~~f~~l~~L~~L~--l~~n~l 117 (239)
T 2xwt_C 94 -TYIDPDALKELPLLKFLG--IFNTGL 117 (239)
T ss_dssp -CEECTTSEECCTTCCEEE--EEEECC
T ss_pred -eEcCHHHhCCCCCCCEEe--CCCCCC
Confidence 3444 4567777777777 555543
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=8.5e-15 Score=156.39 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=80.8
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCc-ccccccCCceee-cCC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLL-NGE 539 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~-l~~ 539 (832)
++++.++++++++|..+ ..++++|+|++|.|+.+|. .|.++++|++|+|++|...+.+|. .|.++++|+++. ++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56778888999999877 3689999999999999986 589999999999999887777764 578888888654 444
Q ss_pred ccCcccccCCCCCCCCCccCCceeeCCccCC
Q 003300 540 TYSLKYMPVGISKLTSLRTLDKFVVGGGIDG 570 (832)
Q Consensus 540 ~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~ 570 (832)
|......|..+.++++|+.|+ +.+|.+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~--l~~n~l~~ 118 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLL--ISNTGIKH 118 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEE--EEEECCSS
T ss_pred CcccccCchhhhhcccccccc--cccccccc
Confidence 544444456688999999998 66666543
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.56 E-value=4.1e-16 Score=180.01 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=68.4
Q ss_pred HhhcccccEEEecCcccccc-------------CCCcEEecCCCcc-----ccccccCCCCceeEEEeCCcCcccccccc
Q 003300 441 FSKLACLRALVIRQSLVIRL-------------SSSPFRLHSNLIR-----EIPKNVGKLIHLRYLNLSELGIERLPKTL 502 (832)
Q Consensus 441 f~~~~~Lr~L~~~~~~~~~~-------------~~r~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~ 502 (832)
...+++|+.|.+.++.+... .+++|++++|.++ .++..+.++++|++|++++|.+..+|..+
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~ 239 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence 34667777777776653111 1367777777664 24444556677777777777776666667
Q ss_pred cCCCcccEEeccCccCc---cccCcccccccCCceeecCCccCcccccCCCCCCCCCccCC
Q 003300 503 CELYNLQKLDIRRCRNL---KELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLD 560 (832)
Q Consensus 503 ~~l~~L~~L~L~~~~~~---~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~ 560 (832)
.++++|++|+++++... ...+..+..+++|+.|+++++ ....+|..+..+++|++|+
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEE
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEe
Confidence 77777777777643222 122334455556666665554 2334444455555666665
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=3e-14 Score=147.41 Aligned_cols=201 Identities=20% Similarity=0.209 Sum_probs=125.5
Q ss_pred cCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCcc
Q 003300 479 VGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRT 558 (832)
Q Consensus 479 l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~ 558 (832)
++++++|++++++++.++.+|..+. .+|++|++++|......|..|..+++|++|++++|.. +.+|.. +.+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCE
Confidence 4567777888888887777777664 5777888887775555556677778888888877743 334332 55666666
Q ss_pred CCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhch
Q 003300 559 LDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKD 638 (832)
Q Consensus 559 L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 638 (832)
|+ +.+|.+.. + +. .+..+++|+.|++++|
T Consensus 82 L~--Ls~N~l~~--------l-----------------~~-------~~~~l~~L~~L~l~~N----------------- 110 (290)
T 1p9a_G 82 LD--LSHNQLQS--------L-----------------PL-------LGQTLPALTVLDVSFN----------------- 110 (290)
T ss_dssp EE--CCSSCCSS--------C-----------------CC-------CTTTCTTCCEEECCSS-----------------
T ss_pred EE--CCCCcCCc--------C-----------------ch-------hhccCCCCCEEECCCC-----------------
Confidence 65 33333210 0 00 1122333444444333
Q ss_pred HHHhhcCCCCCCccEEEEEeeCCCCCC-chhccccCCcEEEEeccCCCCcCCCCCCccccceeccccccceeeCccccCC
Q 003300 639 EQLLKTLQPPLSVEKLGIILYGGNIFP-KWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLGT 717 (832)
Q Consensus 639 ~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~~ 717 (832)
....+| ..+..+++|++|+|++|.. ..+|.
T Consensus 111 ---------------------~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~--------------------------- 141 (290)
T 1p9a_G 111 ---------------------RLTSLPLGALRGLGELQELYLKGNEL-KTLPP--------------------------- 141 (290)
T ss_dssp ---------------------CCCCCCSSTTTTCTTCCEEECTTSCC-CCCCT---------------------------
T ss_pred ---------------------cCcccCHHHHcCCCCCCEEECCCCCC-CccCh---------------------------
Confidence 333343 4567788888998888842 11111
Q ss_pred CCCCCCCCCCCCCCCCccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeE
Q 003300 718 EESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDL 797 (832)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 797 (832)
..+..+++|+.|+++++ .++.+ .+..+..+++|+.|++++|. ++.+|..+..+++|+.|
T Consensus 142 --------------~~~~~l~~L~~L~L~~N-~l~~l-----~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 142 --------------GLLTPTPKLEKLSLANN-NLTEL-----PAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp --------------TTTTTCTTCCEEECTTS-CCSCC-----CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEE
T ss_pred --------------hhcccccCCCEEECCCC-cCCcc-----CHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeE
Confidence 01346677788877664 34432 22345678899999998877 88899888888899999
Q ss_pred EEcCChh
Q 003300 798 TIWKCPI 804 (832)
Q Consensus 798 ~l~~c~~ 804 (832)
++++||-
T Consensus 201 ~L~~Np~ 207 (290)
T 1p9a_G 201 FLHGNPW 207 (290)
T ss_dssp ECCSCCB
T ss_pred EeCCCCc
Confidence 9998874
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=1.6e-14 Score=151.07 Aligned_cols=185 Identities=21% Similarity=0.184 Sum_probs=116.0
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
++|++++|.++.+| .+..+++|++|++++|.++.++. +.++++|++|++++|. +..+| .+..+++|++|++++|..
T Consensus 44 ~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 44 TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCC
T ss_pred CEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCC
Confidence 45566777777776 57778888888888888887777 8888888888888876 45555 477888888888888854
Q ss_pred cccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEec
Q 003300 543 LKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGR 622 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 622 (832)
..+|. +..+++|+.|+ +.+|.+... ..+..+++|+.+++.+.. +..+. .+..+++|+.|++++|.
T Consensus 120 -~~~~~-l~~l~~L~~L~--l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 120 -TDVTP-LAGLSNLQVLY--LDLNQITNI-----SPLAGLTNLQYLSIGNAQ-VSDLT-----PLANLSKLTTLKADDNK 184 (308)
T ss_dssp -CCCGG-GTTCTTCCEEE--CCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSSC
T ss_pred -CCchh-hcCCCCCCEEE--CCCCccCcC-----ccccCCCCccEEEccCCc-CCCCh-----hhcCCCCCCEEECCCCc
Confidence 44443 77788888887 555554321 124455555555555432 11111 14556666666666665
Q ss_pred CCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccC
Q 003300 623 VVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~ 683 (832)
+...+ .+..+++|+.|++++|....++. +..+++|+.|+|++|.
T Consensus 185 l~~~~----------------~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 185 ISDIS----------------PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCCCG----------------GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred cCcCh----------------hhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 54321 12344566666666666555542 5566666666666664
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=7.6e-16 Score=171.82 Aligned_cols=188 Identities=15% Similarity=0.103 Sum_probs=124.4
Q ss_pred CCcEEecCCCccccc-cccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 462 SSPFRLHSNLIREIP-KNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
+++|+|++|.++.++ ..|+.+++|++|+|++|.++.+++ +..+++|++|+|++|. +..+| ..++|++|++++|
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~~N 109 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANN 109 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCSS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEEECcCC
Confidence 489999999999875 689999999999999999997665 9999999999999987 54444 3489999999999
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhccc-CCCCCCceEEE
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLY-NQQNLLRLRLE 619 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~ 619 (832)
......+. .+++|+.|+ +.+|.+.+..+..+. .+++|+.+++++.. +.......+. .+++|+.|+++
T Consensus 110 ~l~~~~~~---~l~~L~~L~--L~~N~l~~~~~~~~~---~l~~L~~L~Ls~N~----l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 110 NISRVSCS---RGQGKKNIY--LANNKITMLRDLDEG---CRSRVQYLDLKLNE----IDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CCCCEEEC---CCSSCEEEE--CCSSCCCSGGGBCGG---GGSSEEEEECTTSC----CCEEEGGGGGGGTTTCCEEECT
T ss_pred cCCCCCcc---ccCCCCEEE--CCCCCCCCCCchhhc---CCCCCCEEECCCCC----CCCcChHHHhhhCCcccEEecC
Confidence 66554433 467888888 677776544333333 33444455554422 1111112222 45666777766
Q ss_pred EecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccC
Q 003300 620 FGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~ 683 (832)
+|.+... .....+++|+.|++++|....+|..+..+++|+.|+|++|.
T Consensus 178 ~N~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 178 YNFIYDV----------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp TSCCCEE----------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred CCccccc----------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 6654321 12223556666666666665555555566666666666653
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=3.3e-16 Score=166.81 Aligned_cols=78 Identities=19% Similarity=0.159 Sum_probs=39.3
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCccc--ccccccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIER--LPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
++|++++|.+...+..+..+++|++|++++|.+.. +|..+..+++|++|++++|......|..++.+++|++|++++|
T Consensus 73 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred eEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 44555555555444444455555555555555441 4444555555555555555433344444445555555555554
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=3.5e-14 Score=145.81 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=113.3
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
+.|++++|.++.++ .++.+++|++|++++|.++.++ .+.++++|++|++++|......|..+..+++|++|++++|..
T Consensus 44 ~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 44 DQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp CEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC
Confidence 55666777776664 4777888888888888877764 577888888888888764444444567788888888888855
Q ss_pred cccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEec
Q 003300 543 LKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGR 622 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 622 (832)
....|..++++++|+.|+ +.+|.+..... ..+..+++|+.|++++|.
T Consensus 122 ~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~-------------------------------~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLN--LAHNQLQSLPK-------------------------------GVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp CCCCTTTTTTCTTCCEEE--CCSSCCCCCCT-------------------------------TTTTTCTTCCEEECCSSC
T ss_pred CccCHHHhccCCCCCEEE--CCCCccCccCH-------------------------------HHhccCccCCEEECCCCC
Confidence 444444467777888777 55554322111 113344556666666665
Q ss_pred CCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCc-hhccccCCcEEEEeccCC
Q 003300 623 VVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPK-WLTSLTNLRNLYLRSCVK 684 (832)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~L~~~~~ 684 (832)
+...+.. .+..+++|+.|++++|....+|. .+..+++|+.|+|++|..
T Consensus 169 l~~~~~~--------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 169 LQSLPEG--------------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCCCCTT--------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCccCHH--------------HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 5432221 24456677777777777666654 467889999999999863
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=8.4e-14 Score=142.80 Aligned_cols=192 Identities=18% Similarity=0.154 Sum_probs=143.1
Q ss_pred cccEEEecCcccccc---C---CCcEEecCCCcccccc-ccCCCCceeEEEeCCcCccccccc-ccCCCcccEEeccCcc
Q 003300 446 CLRALVIRQSLVIRL---S---SSPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDIRRCR 517 (832)
Q Consensus 446 ~Lr~L~~~~~~~~~~---~---~r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L~~~~ 517 (832)
..+++.+.++.+... + .+.|++++|.++.+|. .+.++++|++|++++|.++.+|.. |.++++|++|++++|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 467787777664322 1 4899999999999875 689999999999999999988766 5889999999999987
Q ss_pred CccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCC
Q 003300 518 NLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVS 597 (832)
Q Consensus 518 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~ 597 (832)
.....+..+..+++|++|++++|......|..+..+++|+.|+ +.+|.+......
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--Ls~n~l~~~~~~----------------------- 151 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS--LGYNELQSLPKG----------------------- 151 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTT-----------------------
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE--CCCCcCCccCHh-----------------------
Confidence 5444445678999999999999966555555688999999998 556553321111
Q ss_pred ChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCch-hccccCCcE
Q 003300 598 HLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKW-LTSLTNLRN 676 (832)
Q Consensus 598 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-l~~l~~L~~ 676 (832)
.+..+++|+.|++++|.+...+.. .+..+++|+.|++++|....+|.. +..+++|+.
T Consensus 152 --------~~~~l~~L~~L~L~~n~l~~~~~~--------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 152 --------VFDKLTSLKELRLYNNQLKRVPEG--------------AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp --------TTTTCTTCCEEECCSSCCSCCCTT--------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred --------HccCCcccceeEecCCcCcEeChh--------------HhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 233456666677766665443221 345567888888888888777664 678999999
Q ss_pred EEEeccCC
Q 003300 677 LYLRSCVK 684 (832)
Q Consensus 677 L~L~~~~~ 684 (832)
|+|++|+.
T Consensus 210 L~l~~N~~ 217 (270)
T 2o6q_A 210 LQLQENPW 217 (270)
T ss_dssp EECCSSCB
T ss_pred EEecCCCe
Confidence 99999963
No 86
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.50 E-value=2.7e-13 Score=145.13 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=132.1
Q ss_pred cCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc------cH
Q 003300 178 DEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF------EG 251 (832)
Q Consensus 178 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~ 251 (832)
.+..|+||+++++++.+++... +++.|+|++|+|||||++++++. . . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 3457999999999999988641 58999999999999999999863 2 2 7788765432 45
Q ss_pred HHHHHHHHHHhCC-----------------CCC-CCCcHHHHHHHHHHHHcC-CceEEEEeCCCCCCc-------ccchh
Q 003300 252 IRVAKAIIEGLGV-----------------SAS-GLSEFESLMKQIQEYIMG-KKFFLVLDDVWDGDY-------KKWDP 305 (832)
Q Consensus 252 ~~~~~~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~-------~~~~~ 305 (832)
..++..+...+.. ... ...+.+.+.+.+.+..+. ++.+||+||++..+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666655432 000 123456666666666543 489999999966321 11222
Q ss_pred hhhhhcCCCCCcEEEEEeCCHHHHHHh-----------CC-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHH
Q 003300 306 FFSCLKNGHHESKILITTRDRSVALQL-----------GS-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGR 373 (832)
Q Consensus 306 l~~~l~~~~~gs~iivTtr~~~~~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 373 (832)
+...+. ...+.++|+|++.......+ +. ...+.+.+|+.+|+.+++.......+. ....+.+.
T Consensus 155 L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~----~~~~~~~~ 229 (350)
T 2qen_A 155 FAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL----DVPENEIE 229 (350)
T ss_dssp HHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHH
T ss_pred HHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHH
Confidence 322222 22477899999876542221 11 237999999999999999875422111 11245678
Q ss_pred HHHHHcCCChhHHHHHHHHhc
Q 003300 374 KIAHKCKGLPLAAKVIGNLLR 394 (832)
Q Consensus 374 ~i~~~~~g~Plai~~~~~~l~ 394 (832)
++++.++|+|+++..++..+.
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYL 250 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHh
Confidence 999999999999999887653
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=1.3e-14 Score=146.06 Aligned_cols=191 Identities=17% Similarity=0.184 Sum_probs=127.9
Q ss_pred CCcEEecCCCcccccc-ccCCCCceeEEEeCCcC-cccccc-cccCCCcccEEeccCccCccccC-cccccccCCceeec
Q 003300 462 SSPFRLHSNLIREIPK-NVGKLIHLRYLNLSELG-IERLPK-TLCELYNLQKLDIRRCRNLKELP-AGIGKLKNMRSLLN 537 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~-i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l 537 (832)
.++|++++|.++.+|. .+.++++|++|++++|. ++.+|. .|.++++|++|++++|+.+..+| ..|..+++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 4889999999999887 68899999999999997 988875 78999999999999833355555 57889999999999
Q ss_pred CCccCcccccCCCCCCCCCc---cCCceeeCC-ccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCC
Q 003300 538 GETYSLKYMPVGISKLTSLR---TLDKFVVGG-GIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNL 613 (832)
Q Consensus 538 ~~~~~~~~~p~~l~~L~~L~---~L~~~~~~~-~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L 613 (832)
++|.. +.+|. +..+++|+ .|+ +.+| .+...... .+..+++|
T Consensus 113 ~~n~l-~~lp~-~~~l~~L~~L~~L~--l~~N~~l~~i~~~-------------------------------~~~~l~~L 157 (239)
T 2xwt_C 113 FNTGL-KMFPD-LTKVYSTDIFFILE--ITDNPYMTSIPVN-------------------------------AFQGLCNE 157 (239)
T ss_dssp EEECC-CSCCC-CTTCCBCCSEEEEE--EESCTTCCEECTT-------------------------------TTTTTBSS
T ss_pred CCCCC-ccccc-cccccccccccEEE--CCCCcchhhcCcc-------------------------------cccchhcc
Confidence 99954 45776 78888887 776 5555 43221111 23344555
Q ss_pred C-ceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeC-CCCCC-chhccc-cCCcEEEEeccCCCCcCC
Q 003300 614 L-RLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYG-GNIFP-KWLTSL-TNLRNLYLRSCVKCEHLP 689 (832)
Q Consensus 614 ~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p-~~l~~l-~~L~~L~L~~~~~~~~l~ 689 (832)
+ .|++++|.+...+.. .+.. .+|+.|++++|. ...+| ..+..+ ++|+.|++++|. +..+|
T Consensus 158 ~~~L~l~~n~l~~i~~~--------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~ 221 (239)
T 2xwt_C 158 TLTLKLYNNGFTSVQGY--------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALP 221 (239)
T ss_dssp EEEEECCSCCCCEECTT--------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCC
T ss_pred eeEEEcCCCCCcccCHh--------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCC
Confidence 5 555555554321111 1222 467777777763 55553 345667 778888887774 33444
Q ss_pred CCCCcc-ccceecccc
Q 003300 690 PLGKLP-LEKLELRNL 704 (832)
Q Consensus 690 ~l~~lp-L~~l~l~~l 704 (832)
.. .++ ++.|.+.+.
T Consensus 222 ~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 222 SK-GLEHLKELIARNT 236 (239)
T ss_dssp CT-TCTTCSEEECTTC
T ss_pred hh-HhccCceeeccCc
Confidence 32 344 555555443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=8.8e-14 Score=140.95 Aligned_cols=172 Identities=15% Similarity=0.124 Sum_probs=118.5
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCccccc-ccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
++++++++.++.+|..+. .+|++|+|++|.+..++ ..|.++++|++|++++|......|..|..+++|++|++++|.
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 567888888888888775 58899999999988664 468889999999999987665556668889999999999886
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
.....+..+..+++|+.|+ +.+|.+..... ..+..+++|+.|++++|
T Consensus 95 l~~~~~~~~~~l~~L~~L~--L~~N~l~~~~~-------------------------------~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLY--LGGNQLKSLPS-------------------------------GVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEE--CCSSCCCCCCT-------------------------------TTTTTCTTCCEEECCSS
T ss_pred ccccChhHhcccCCCCEEE--cCCCcCCCcCh-------------------------------hHhccCCcccEEECcCC
Confidence 5544445577888888887 55555322111 11334456666666666
Q ss_pred cCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCc-hhccccCCcEEEEeccC
Q 003300 622 RVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPK-WLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~L~~~~ 683 (832)
.+...+.. .+..+++|+.|++++|....+|. .+..+++|+.|+|++|.
T Consensus 142 ~l~~~~~~--------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 142 QLQSIPAG--------------AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCCCTT--------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCccCHH--------------HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 55433221 24445666777777666665544 56677788888888775
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=3.1e-14 Score=146.15 Aligned_cols=193 Identities=18% Similarity=0.128 Sum_probs=137.6
Q ss_pred hhcccccEEEecCcccccc-----C--CCcEEecCCCccccccccCCCCceeEEEeCCcCccccccc-ccCCCcccEEec
Q 003300 442 SKLACLRALVIRQSLVIRL-----S--SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDI 513 (832)
Q Consensus 442 ~~~~~Lr~L~~~~~~~~~~-----~--~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L 513 (832)
..+++|+.|.+.++.+... + +++|++++|.++.++ .++++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 4678899999988764221 1 489999999999875 789999999999999999977654 789999999999
Q ss_pred cCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCC
Q 003300 514 RRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGL 593 (832)
Q Consensus 514 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~ 593 (832)
++|......|..+..+++|++|++++|......|..++++++|+.|+ +.+|.+......
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~------------------- 175 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD--LSYNQLQSLPEG------------------- 175 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTT-------------------
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE--CCCCCcCccCHH-------------------
Confidence 99985555555689999999999999965544444578999999998 666654321111
Q ss_pred CCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccC
Q 003300 594 GNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTN 673 (832)
Q Consensus 594 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~ 673 (832)
.+..+++|+.|+++.|.+...++. .+..+++|+.|++++|.. .+.+++
T Consensus 176 ------------~~~~l~~L~~L~L~~N~l~~~~~~--------------~~~~l~~L~~L~l~~N~~------~~~~~~ 223 (272)
T 3rfs_A 176 ------------VFDKLTQLKDLRLYQNQLKSVPDG--------------VFDRLTSLQYIWLHDNPW------DCTCPG 223 (272)
T ss_dssp ------------TTTTCTTCCEEECCSSCCSCCCTT--------------TTTTCTTCCEEECCSSCB------CCCTTT
T ss_pred ------------HhcCCccCCEEECCCCcCCccCHH--------------HHhCCcCCCEEEccCCCc------cccCcH
Confidence 133445566666666655433221 344566777777776643 235667
Q ss_pred CcEEEEeccCCCCcC
Q 003300 674 LRNLYLRSCVKCEHL 688 (832)
Q Consensus 674 L~~L~L~~~~~~~~l 688 (832)
|+.|+++.|.....+
T Consensus 224 l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 224 IRYLSEWINKHSGVV 238 (272)
T ss_dssp THHHHHHHHHTGGGB
T ss_pred HHHHHHHHHhCCCcc
Confidence 888888777644433
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=6e-15 Score=170.27 Aligned_cols=148 Identities=12% Similarity=0.022 Sum_probs=76.7
Q ss_pred CCcEEecCCCccc-----cccccCCCCceeEEEeCCcCcc-----cccccccCCCcccEEeccCccCccccCcccccccC
Q 003300 462 SSPFRLHSNLIRE-----IPKNVGKLIHLRYLNLSELGIE-----RLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKN 531 (832)
Q Consensus 462 ~r~L~L~~n~l~~-----lp~~l~~l~~L~~L~Ls~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 531 (832)
+++|+|++|.++. ++..+..+++|++|++++|.++ .++..+.++++|++|++++|. ...+|..+..+++
T Consensus 166 L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAAN 244 (592)
T ss_dssp CSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTT
T ss_pred CCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhH
Confidence 3666666665432 2222345666667777666654 344445566677777777655 3345566666777
Q ss_pred CceeecCCccCc---ccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhccc
Q 003300 532 MRSLLNGETYSL---KYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLY 608 (832)
Q Consensus 532 L~~L~l~~~~~~---~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~ 608 (832)
|++|+++.+... ...+..+..+++|+.|+ ..... ....+ ..+..+++|+.+++.++. +.. ......+.
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~--l~~~~-~~~l~---~~~~~~~~L~~L~Ls~~~-l~~--~~~~~~~~ 315 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG--LSYMG-PNEMP---ILFPFAAQIRKLDLLYAL-LET--EDHCTLIQ 315 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE--ETTCC-TTTGG---GGGGGGGGCCEEEETTCC-CCH--HHHHHHHT
T ss_pred HHhhcccccccccchHHHHHHhhccccccccC--ccccc-hhHHH---HHHhhcCCCcEEecCCCc-CCH--HHHHHHHH
Confidence 777776643222 12233455666666665 22221 01111 123344556666666543 211 11112345
Q ss_pred CCCCCCceEEE
Q 003300 609 NQQNLLRLRLE 619 (832)
Q Consensus 609 ~~~~L~~L~l~ 619 (832)
.+++|+.|+++
T Consensus 316 ~~~~L~~L~L~ 326 (592)
T 3ogk_B 316 KCPNLEVLETR 326 (592)
T ss_dssp TCTTCCEEEEE
T ss_pred hCcCCCEEecc
Confidence 66777777776
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=1.3e-13 Score=144.17 Aligned_cols=195 Identities=21% Similarity=0.211 Sum_probs=148.6
Q ss_pred cCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCcc
Q 003300 479 VGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRT 558 (832)
Q Consensus 479 l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~ 558 (832)
+..+.+|++|++++|.++.+| .+..+++|++|++++|. +..++. +..+++|++|++++|. +..+| .+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCE
Confidence 456889999999999999987 58999999999999987 556666 9999999999999995 44555 6889999999
Q ss_pred CCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhch
Q 003300 559 LDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKD 638 (832)
Q Consensus 559 L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 638 (832)
|+ +.+|.+.. +..+..+++|+.+++.+..- .... .+..+++|+.|++++|.+....
T Consensus 112 L~--l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l-~~~~-----~l~~l~~L~~L~l~~n~l~~~~----------- 167 (308)
T 1h6u_A 112 LD--LTSTQITD-----VTPLAGLSNLQVLYLDLNQI-TNIS-----PLAGLTNLQYLSIGNAQVSDLT----------- 167 (308)
T ss_dssp EE--CTTSCCCC-----CGGGTTCTTCCEEECCSSCC-CCCG-----GGGGCTTCCEEECCSSCCCCCG-----------
T ss_pred EE--CCCCCCCC-----chhhcCCCCCCEEECCCCcc-CcCc-----cccCCCCccEEEccCCcCCCCh-----------
Confidence 98 67776543 23467777788888776432 2221 2778899999999999875421
Q ss_pred HHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCCCCCCccccceeccccccceeeCccccC
Q 003300 639 EQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLELRNLKSVKRVGNEFLG 716 (832)
Q Consensus 639 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~lpL~~l~l~~l~~L~~~~~~~~~ 716 (832)
.+..+++|+.|++++|....++. +..+++|++|+|++|. +..++++..++ +++.|++.+|.+.+
T Consensus 168 -----~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~l~~l~-------~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 168 -----PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ-ISDVSPLANTS-------NLFIVTLTNQTITN 231 (308)
T ss_dssp -----GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CCBCGGGTTCT-------TCCEEEEEEEEEEC
T ss_pred -----hhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc-cCccccccCCC-------CCCEEEccCCeeec
Confidence 25677899999999999888775 7899999999999995 44444455555 34444455555544
No 92
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.47 E-value=7.1e-13 Score=145.31 Aligned_cols=210 Identities=15% Similarity=0.057 Sum_probs=136.5
Q ss_pred CCceecchhhHHHHHHHH-hccCCCCCCCeEEEEE--EecCCCcHHHHHHHHHcChhhh---ccCC-eeEEEEeCCCccH
Q 003300 179 EGEVCGRVDEKNELLSKL-LCESGEQQQGLYVISL--VGLGGIGKTTLAQLAYNNDEVK---RNFE-KVIWVCVSDTFEG 251 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~~ 251 (832)
+..|+||+++++++..++ .....+.....+.+.| +|++|+||||||+++++..... ..|. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 5321100013456666 9999999999999999842221 0122 4678887777788
Q ss_pred HHHHHHHHHHhCCCCCC-CCcHHHHHHHHHHHHc--CCceEEEEeCCCCCC------cccchhhhhhhcCC---C--CCc
Q 003300 252 IRVAKAIIEGLGVSASG-LSEFESLMKQIQEYIM--GKKFFLVLDDVWDGD------YKKWDPFFSCLKNG---H--HES 317 (832)
Q Consensus 252 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 317 (832)
..++..++.+++...+. ..+...+...+.+.+. +++++||+||+|... .+.+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998765332 2345566667776665 779999999997632 12233333333221 2 344
Q ss_pred EEEEEeCCHHHHHHh--------CC-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcC------CC
Q 003300 318 KILITTRDRSVALQL--------GS-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCK------GL 382 (832)
Q Consensus 318 ~iivTtr~~~~~~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~ 382 (832)
.||+||+...+...+ .. ...+.+.+++.++++++|...+..... ...-..+....|++.++ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCCc
Confidence 588888765533211 11 223999999999999999876432111 11123567788999999 99
Q ss_pred hhHHHHHH
Q 003300 383 PLAAKVIG 390 (832)
Q Consensus 383 Plai~~~~ 390 (832)
|..+..+.
T Consensus 259 p~~~~~l~ 266 (412)
T 1w5s_A 259 ARRAIVAL 266 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 97655544
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=5.8e-14 Score=147.21 Aligned_cols=203 Identities=16% Similarity=0.112 Sum_probs=117.0
Q ss_pred CCcEEecCCCccc-ccccc--CCCCceeEEEeCCcCccc-cc----ccccCCCcccEEeccCccCccccCcccccccCCc
Q 003300 462 SSPFRLHSNLIRE-IPKNV--GKLIHLRYLNLSELGIER-LP----KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMR 533 (832)
Q Consensus 462 ~r~L~L~~n~l~~-lp~~l--~~l~~L~~L~Ls~~~i~~-lp----~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 533 (832)
+++|++++|.+.. .|..+ +.+++|++|+|++|.+.. .| ..+..+++|++|++++|......|..++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4566666666653 44444 666677777777776663 11 2334566777777776665444445666677777
Q ss_pred eeecCCccCccc--cc--CCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccC
Q 003300 534 SLLNGETYSLKY--MP--VGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYN 609 (832)
Q Consensus 534 ~L~l~~~~~~~~--~p--~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 609 (832)
+|++++|..... ++ ..++++++|++|+ +.+|.+ ..+.......+..
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~--Ls~N~l----------------------------~~l~~~~~~l~~~ 222 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLA--LRNTGM----------------------------ETPTGVCAALAAA 222 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCB--CCSSCC----------------------------CCHHHHHHHHHHH
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEE--CCCCCC----------------------------CchHHHHHHHHhc
Confidence 777776643321 21 1234566666665 334332 1122222222456
Q ss_pred CCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCCCcCC
Q 003300 610 QQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP 689 (832)
Q Consensus 610 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~ 689 (832)
+++|+.|++++|.+....+. .+..+..+++|+.|++++|....+|..+. ++|+.|+|++|. +..+|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~-----------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~ 288 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNP-----------SAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAP 288 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCS-----------CCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCC
T ss_pred CCCCCEEECCCCCCCccchh-----------hHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCc
Confidence 67788888888776543111 01223334688888888888888887764 789999999885 33444
Q ss_pred CCCCccccceeccccccceeeCcccc
Q 003300 690 PLGKLPLEKLELRNLKSVKRVGNEFL 715 (832)
Q Consensus 690 ~l~~lpL~~l~l~~l~~L~~~~~~~~ 715 (832)
.+..+ .+++.|++.+|.++
T Consensus 289 ~~~~l-------~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 289 QPDEL-------PEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTSC-------CCCSCEECSSTTTS
T ss_pred hhhhC-------CCccEEECcCCCCC
Confidence 44443 34445555556554
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=1e-12 Score=140.92 Aligned_cols=203 Identities=12% Similarity=0.169 Sum_probs=127.7
Q ss_pred cCCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC-----ccHH
Q 003300 178 DEGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-----FEGI 252 (832)
Q Consensus 178 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 252 (832)
.+..|+||+++++++.+ +.. +++.|+|++|+|||+|++++++. ... ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 34579999999999999 632 48999999999999999999873 222 3688887642 2334
Q ss_pred HHHHHHHHHhC--------------C------CC---------CCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc---
Q 003300 253 RVAKAIIEGLG--------------V------SA---------SGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY--- 300 (832)
Q Consensus 253 ~~~~~i~~~l~--------------~------~~---------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--- 300 (832)
..+..+...+. . +. ......+.+.+.+.+.-+ ++.+||+||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 44444433221 0 00 012344555555544322 489999999965321
Q ss_pred ccchhhhhhhcCCCCCcEEEEEeCCHHHHHHh-----------CC-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccch
Q 003300 301 KKWDPFFSCLKNGHHESKILITTRDRSVALQL-----------GS-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKL 368 (832)
Q Consensus 301 ~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 368 (832)
..+..+...+.....+.++|+|++.......+ +. ...+.+.+|+.+++.+++......... .....
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~ 232 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKDY 232 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCCH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCcH
Confidence 23333333332222467899999987542221 11 257899999999999999875421111 11111
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHH
Q 003300 369 EPMGRKIAHKCKGLPLAAKVIGNLLRSKSTVKEW 402 (832)
Q Consensus 369 ~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w 402 (832)
..|++.++|+|+++..++..+....+...|
T Consensus 233 ----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~ 262 (357)
T 2fna_A 233 ----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFA 262 (357)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHH
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHccccchHHH
Confidence 789999999999999998876543334334
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=1.1e-12 Score=139.90 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=63.4
Q ss_pred ccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCc-ccccccCCceeecCCccCcccccCC-CCCC
Q 003300 476 PKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNGETYSLKYMPVG-ISKL 553 (832)
Q Consensus 476 p~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~-l~~L 553 (832)
|..++.|.. ++++.++++++++|..+. .++++|+|++|. +..+|. .|.++++|++|++++|.+.+.+|.+ |.++
T Consensus 3 p~~~C~C~~-~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 3 HHRICHCSN-RVFLCQESKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp CCSSSEEET-TEEEEESTTCCSCCTTCC--TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CCCccEeeC-CEEEecCCCCCccCcCcC--CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 334444433 678889999999998773 689999999987 667775 5899999999999999877777654 6788
Q ss_pred CCCccCC
Q 003300 554 TSLRTLD 560 (832)
Q Consensus 554 ~~L~~L~ 560 (832)
++|+++.
T Consensus 79 ~~l~~~l 85 (350)
T 4ay9_X 79 PKLHEIR 85 (350)
T ss_dssp TTCCEEE
T ss_pred hhhhhhh
Confidence 8877654
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=145.04 Aligned_cols=193 Identities=16% Similarity=0.088 Sum_probs=136.5
Q ss_pred hcccccEEEecCccccc---------cC--CCcEEecCCCcccc-c----cccCCCCceeEEEeCCcCccccc-ccccCC
Q 003300 443 KLACLRALVIRQSLVIR---------LS--SSPFRLHSNLIREI-P----KNVGKLIHLRYLNLSELGIERLP-KTLCEL 505 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~~~---------~~--~r~L~L~~n~l~~l-p----~~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l 505 (832)
.+++|+.|.+.++.+.. .. +++|++++|.++.. + ..+..+++|++|+|++|.+..+| ..|.++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45679999999876421 11 48999999998862 2 34567999999999999998665 678999
Q ss_pred CcccEEeccCccCccc--cC--cccccccCCceeecCCccCcccccCC----CCCCCCCccCCceeeCCccCCCCccCcc
Q 003300 506 YNLQKLDIRRCRNLKE--LP--AGIGKLKNMRSLLNGETYSLKYMPVG----ISKLTSLRTLDKFVVGGGIDGSNTCRLE 577 (832)
Q Consensus 506 ~~L~~L~L~~~~~~~~--lp--~~l~~l~~L~~L~l~~~~~~~~~p~~----l~~L~~L~~L~~~~~~~~~~~~~~~~l~ 577 (832)
++|++|++++|...+. ++ ..++.+++|++|++++|.. +.+|.. ++.+++|++|+ +.+|.+....+..+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~--Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLD--LSHNSLRATVNPSAP 245 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEE--CTTSCCCCCCCSCCS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEE--CCCCCCCccchhhHH
Confidence 9999999999975542 32 3347899999999999954 444432 46778999998 667765443233232
Q ss_pred ccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEE
Q 003300 578 SLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGII 657 (832)
Q Consensus 578 ~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 657 (832)
.+.. +++|+.|++++|.+...+. .+ +++|+.|+++
T Consensus 246 ~~~~----------------------------~~~L~~L~Ls~N~l~~lp~---------------~~--~~~L~~L~Ls 280 (310)
T 4glp_A 246 RCMW----------------------------SSALNSLNLSFAGLEQVPK---------------GL--PAKLRVLDLS 280 (310)
T ss_dssp SCCC----------------------------CTTCCCEECCSSCCCSCCS---------------CC--CSCCSCEECC
T ss_pred hccC----------------------------cCcCCEEECCCCCCCchhh---------------hh--cCCCCEEECC
Confidence 2222 2466666666666543221 11 2678888888
Q ss_pred eeCCCCCCchhccccCCcEEEEeccCC
Q 003300 658 LYGGNIFPKWLTSLTNLRNLYLRSCVK 684 (832)
Q Consensus 658 ~~~~~~~p~~l~~l~~L~~L~L~~~~~ 684 (832)
+|....+|. +..+++|+.|+|++|..
T Consensus 281 ~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 281 SNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CCcCCCCch-hhhCCCccEEECcCCCC
Confidence 888777765 57889999999999963
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=1.2e-14 Score=156.12 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=62.9
Q ss_pred EEecCCCccc-cccccCCCCceeEEEeCCcCccccc-----ccccCCC-cccEEeccCccCccccCcccccc-----cCC
Q 003300 465 FRLHSNLIRE-IPKNVGKLIHLRYLNLSELGIERLP-----KTLCELY-NLQKLDIRRCRNLKELPAGIGKL-----KNM 532 (832)
Q Consensus 465 L~L~~n~l~~-lp~~l~~l~~L~~L~Ls~~~i~~lp-----~~~~~l~-~L~~L~L~~~~~~~~lp~~l~~l-----~~L 532 (832)
+++++|.++. +|..+....+|++|+|++|.++..+ ..+.+++ +|++|++++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4567777664 3444444555888888888777554 4566777 78888888876544444455554 778
Q ss_pred ceeecCCccCcccccCC----CCCC-CCCccCCceeeCCcc
Q 003300 533 RSLLNGETYSLKYMPVG----ISKL-TSLRTLDKFVVGGGI 568 (832)
Q Consensus 533 ~~L~l~~~~~~~~~p~~----l~~L-~~L~~L~~~~~~~~~ 568 (832)
++|++++|......+.. +..+ ++|+.|+ +.+|.+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~--Ls~N~l 121 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD--LGWNDF 121 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE--CCSSCG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEE--CcCCcC
Confidence 88888877544333322 3333 6677776 555554
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=2.6e-14 Score=152.10 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=86.1
Q ss_pred HHHhhc--ccccEEEecCcccccc--------CCCcEEecCCCccc--cccccCCCCceeEEEeCCcCcc-cccccccCC
Q 003300 439 KLFSKL--ACLRALVIRQSLVIRL--------SSSPFRLHSNLIRE--IPKNVGKLIHLRYLNLSELGIE-RLPKTLCEL 505 (832)
Q Consensus 439 ~~f~~~--~~Lr~L~~~~~~~~~~--------~~r~L~L~~n~l~~--lp~~l~~l~~L~~L~Ls~~~i~-~lp~~~~~l 505 (832)
..+..+ .+++.|.+.++.+... -+++|++++|.++. +|..+..+++|++|++++|.++ ..|..+..+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 345555 7788888877664322 14788888888764 6777888888888888888877 567778888
Q ss_pred CcccEEeccCccCcc--ccCcccccccCCceeecCCc-cCccc-ccCCCCCCC-CCccCC
Q 003300 506 YNLQKLDIRRCRNLK--ELPAGIGKLKNMRSLLNGET-YSLKY-MPVGISKLT-SLRTLD 560 (832)
Q Consensus 506 ~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~l~~~-~~~~~-~p~~l~~L~-~L~~L~ 560 (832)
++|++|++++|..+. .+|..+..+++|++|++++| ..... ++..+..++ +|++|+
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 888888888884444 36666778888888888888 43322 344456666 777776
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=9.8e-15 Score=158.47 Aligned_cols=233 Identities=15% Similarity=0.118 Sum_probs=116.4
Q ss_pred HHHhhcccccEEEecCccccc-----------cC--CCcEEecCCCccc----cccc-------cCCCCceeEEEeCCcC
Q 003300 439 KLFSKLACLRALVIRQSLVIR-----------LS--SSPFRLHSNLIRE----IPKN-------VGKLIHLRYLNLSELG 494 (832)
Q Consensus 439 ~~f~~~~~Lr~L~~~~~~~~~-----------~~--~r~L~L~~n~l~~----lp~~-------l~~l~~L~~L~Ls~~~ 494 (832)
..+..+++|+.|.+.++.+.. .. +++|+|++|.+.. +|.. +..+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 345667778888777765311 11 3677777664432 2333 3566777777777776
Q ss_pred ccc-----ccccccCCCcccEEeccCccCccc----cCcccccc---------cCCceeecCCccCc-cccc---CCCCC
Q 003300 495 IER-----LPKTLCELYNLQKLDIRRCRNLKE----LPAGIGKL---------KNMRSLLNGETYSL-KYMP---VGISK 552 (832)
Q Consensus 495 i~~-----lp~~~~~l~~L~~L~L~~~~~~~~----lp~~l~~l---------~~L~~L~l~~~~~~-~~~p---~~l~~ 552 (832)
+.. +|..+.++++|++|+|++|..... ++..+..+ ++|++|++++|... ..+| ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 664 566666777777777777664322 22223333 67777777776543 2233 23445
Q ss_pred CCCCccCCceeeCCccCCCCc-cCcc-ccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHH
Q 003300 553 LTSLRTLDKFVVGGGIDGSNT-CRLE-SLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEA 630 (832)
Q Consensus 553 L~~L~~L~~~~~~~~~~~~~~-~~l~-~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 630 (832)
+++|++|+ +.+|.+..... ..+. .+..+++|+.+++.+..-...-.......+..+++|+.|++++|.+...
T Consensus 186 ~~~L~~L~--L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~---- 259 (386)
T 2ca6_A 186 HRLLHTVK--MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR---- 259 (386)
T ss_dssp CTTCCEEE--CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH----
T ss_pred CCCcCEEE--CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh----
Confidence 66666666 44444321000 0111 3344455555555543210000011122345556666666666554211
Q ss_pred HhhhhhchHHHhhcC--CCCCCccEEEEEeeCCCC-----CCchh-ccccCCcEEEEeccC
Q 003300 631 RRRKKEKDEQLLKTL--QPPLSVEKLGIILYGGNI-----FPKWL-TSLTNLRNLYLRSCV 683 (832)
Q Consensus 631 ~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~-----~p~~l-~~l~~L~~L~L~~~~ 683 (832)
....+...+ ...++|+.|++++|.... +|..+ .++++|++|+|++|.
T Consensus 260 ------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 260 ------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 011122222 225566666666665544 45444 345666666666664
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=2.1e-14 Score=155.93 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=44.2
Q ss_pred CcEEecCCCccc-----cccccCCCCceeEEEeCCcCcc----cccccc-------cCCCcccEEeccCccCcc----cc
Q 003300 463 SPFRLHSNLIRE-----IPKNVGKLIHLRYLNLSELGIE----RLPKTL-------CELYNLQKLDIRRCRNLK----EL 522 (832)
Q Consensus 463 r~L~L~~n~l~~-----lp~~l~~l~~L~~L~Ls~~~i~----~lp~~~-------~~l~~L~~L~L~~~~~~~----~l 522 (832)
++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.... .+
T Consensus 35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 114 (386)
T 2ca6_A 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114 (386)
T ss_dssp CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence 566666666543 3334556666666666665433 223332 456666666666655433 24
Q ss_pred CcccccccCCceeecCCccC
Q 003300 523 PAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 523 p~~l~~l~~L~~L~l~~~~~ 542 (832)
|..+..+++|++|++++|..
T Consensus 115 ~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 115 IDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCC
T ss_pred HHHHHhCCCCCEEECcCCCC
Confidence 55556666666666666643
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=1.3e-12 Score=132.23 Aligned_cols=152 Identities=15% Similarity=0.081 Sum_probs=116.0
Q ss_pred CceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCce
Q 003300 483 IHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKF 562 (832)
Q Consensus 483 ~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~ 562 (832)
...++++++++.++.+|..+. .+|++|++++|......|..|.++++|++|++++|......|..+.++++|+.|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-- 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG-- 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE--
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE--
Confidence 457899999999999998776 6999999999986666667799999999999999976665566688999999998
Q ss_pred eeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCCCCchHHHhhhhhchHHHh
Q 003300 563 VVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLL 642 (832)
Q Consensus 563 ~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 642 (832)
+.+|.+..... ..+..+++|+.|++++|.+...+..
T Consensus 90 L~~n~l~~~~~-------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~------------- 125 (251)
T 3m19_A 90 LANNQLASLPL-------------------------------GVFDHLTQLDKLYLGGNQLKSLPSG------------- 125 (251)
T ss_dssp CTTSCCCCCCT-------------------------------TTTTTCTTCCEEECCSSCCCCCCTT-------------
T ss_pred CCCCcccccCh-------------------------------hHhcccCCCCEEEcCCCcCCCcChh-------------
Confidence 55555321110 1244567788888888876544322
Q ss_pred hcCCCCCCccEEEEEeeCCCCCCc-hhccccCCcEEEEeccC
Q 003300 643 KTLQPPLSVEKLGIILYGGNIFPK-WLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 643 ~~l~~~~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~L~~~~ 683 (832)
.+..+++|+.|++++|....+|. .+..+++|++|+|++|.
T Consensus 126 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 126 -VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp -TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 34567888888888888877766 57788888888888885
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=4.6e-14 Score=151.51 Aligned_cols=185 Identities=11% Similarity=0.031 Sum_probs=107.5
Q ss_pred EEEeCCcCcc-cccccccCCCcccEEeccCccCccccC----ccccccc-CCceeecCCccCcccccCCCCCC-----CC
Q 003300 487 YLNLSELGIE-RLPKTLCELYNLQKLDIRRCRNLKELP----AGIGKLK-NMRSLLNGETYSLKYMPVGISKL-----TS 555 (832)
Q Consensus 487 ~L~Ls~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp----~~l~~l~-~L~~L~l~~~~~~~~~p~~l~~L-----~~ 555 (832)
++++++|.++ .+|..+....+|++|++++|......+ ..+..++ +|++|++++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 5789999998 456656666679999999988444333 5677888 99999999996655444445443 88
Q ss_pred CccCCceeeCCccCCCCccCccc-cccC-CcCCceeecCCCCCCChhhhhhhcccC-CCCCCceEEEEecCCCCchHHHh
Q 003300 556 LRTLDKFVVGGGIDGSNTCRLES-LKNL-QLLRECGIEGLGNVSHLDEAERLQLYN-QQNLLRLRLEFGRVVDGEDEARR 632 (832)
Q Consensus 556 L~~L~~~~~~~~~~~~~~~~l~~-l~~L-~~L~~l~i~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~ 632 (832)
|++|+ +.+|.+.......+.. +..+ ++|+.+++++..-...........+.. .++|+.|++++|.+....
T Consensus 82 L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~----- 154 (362)
T 3goz_A 82 VTSLN--LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS----- 154 (362)
T ss_dssp CCEEE--CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-----
T ss_pred ccEEE--CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-----
Confidence 99998 6777654433322222 3333 456666666543111111111122333 357777777777654221
Q ss_pred hhhhchHHHhhcCCCC-CCccEEEEEeeCCCCCC-c----hhccc-cCCcEEEEeccC
Q 003300 633 RKKEKDEQLLKTLQPP-LSVEKLGIILYGGNIFP-K----WLTSL-TNLRNLYLRSCV 683 (832)
Q Consensus 633 ~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~p-~----~l~~l-~~L~~L~L~~~~ 683 (832)
...+...+... ++|+.|++++|.....+ . .+..+ ++|++|+|++|.
T Consensus 155 -----~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 155 -----SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp -----HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred -----HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 11222222223 36777777777654332 2 22234 477777777774
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=1.2e-12 Score=146.94 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=94.3
Q ss_pred EEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcc
Q 003300 465 FRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLK 544 (832)
Q Consensus 465 L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 544 (832)
|++++|.++.+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|. +..+|. +.+ +|++|++++|.. +
T Consensus 64 L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~l-~ 133 (571)
T 3cvr_A 64 LQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNNQL-T 133 (571)
T ss_dssp EECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSSCC-S
T ss_pred EEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCCcC-C
Confidence 3444555555554442 45555555555555555 234555555555554 233444 333 555555555532 2
Q ss_pred cccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecCC
Q 003300 545 YMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRVV 624 (832)
Q Consensus 545 ~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 624 (832)
.+|. .+++|+.|+ +.+|.+.... . .+++|+.+++.+.. +..++. +. ++|+.|++++|.++
T Consensus 134 ~lp~---~l~~L~~L~--Ls~N~l~~lp-~------~l~~L~~L~Ls~N~-L~~lp~-----l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 134 MLPE---LPALLEYIN--ADNNQLTMLP-E------LPTSLEVLSVRNNQ-LTFLPE-----LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCCC---CCTTCCEEE--CCSSCCSCCC-C------CCTTCCEEECCSSC-CSCCCC-----CC--TTCCEEECCSSCCS
T ss_pred CCCC---cCccccEEe--CCCCccCcCC-C------cCCCcCEEECCCCC-CCCcch-----hh--CCCCEEECcCCCCC
Confidence 2444 345555555 4444433211 1 22334444444321 111111 11 67788888887765
Q ss_pred CCchHHHhhhhhchHHHhhc-CCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCCC
Q 003300 625 DGEDEARRRKKEKDEQLLKT-LQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKC 685 (832)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~~ 685 (832)
..+. +... ....+.|+.|++++|....+|.++..+++|+.|+|++|...
T Consensus 194 ~lp~------------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 194 SLPA------------VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SCCC------------CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred chhh------------HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 3321 0000 11223349999999999999999999999999999999743
No 104
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.35 E-value=4.2e-14 Score=163.23 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=40.8
Q ss_pred Ccccceeecccccccccccccccccccc-CCCCccceeeecccccccC-CCCCCCCCCCcCeEEEcCChhh
Q 003300 737 FPKLKSLIIGAMEELEEWNYRITRKENI-SIMPRLSSLEVRSCNKLKA-LPDYLLQTTTLQDLTIWKCPIL 805 (832)
Q Consensus 737 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~L 805 (832)
+++|+.|++++|. +..... ..+ ..+++|+.|+|++|+.-.. ++.....+++|+.|++++|+.-
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~-----~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGM-----HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHH-----HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCC-CcHHHH-----HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6778888777663 322111 111 3589999999999985211 1223345789999999999873
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=1.2e-12 Score=127.08 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=94.4
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
+.|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..+..+++|++|++++|..
T Consensus 47 ~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 47 TYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp CEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred cEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 44566677777777 6777888888888888766654 577788888888888776555677778888888888888866
Q ss_pred cccccCCCCCCCCCccCCceeeCCc-cCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 543 LKYMPVGISKLTSLRTLDKFVVGGG-IDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~~~~~~~~-~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
....|..++++++|++|+ +.+|. +.. +..+..+++|+.+++.+.. +..+. .+..+++|+.|++++|
T Consensus 125 ~~~~~~~l~~l~~L~~L~--L~~n~~i~~-----~~~l~~l~~L~~L~l~~n~-i~~~~-----~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSID--LSYNGAITD-----IMPLKTLPELKSLNIQFDG-VHDYR-----GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp BGGGHHHHTTCSSCCEEE--CCSCTBCCC-----CGGGGGCSSCCEEECTTBC-CCCCT-----TGGGCSSCCEEEECBC
T ss_pred CcHhHHHHhhCCCCCEEE--ccCCCCccc-----cHhhcCCCCCCEEECCCCC-CcChH-----HhccCCCCCEEEeeCc
Confidence 555666677778888877 55554 221 2234455555555555432 11111 3455667777777666
Q ss_pred cC
Q 003300 622 RV 623 (832)
Q Consensus 622 ~~ 623 (832)
.+
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 54
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.35 E-value=2.9e-14 Score=164.54 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=41.3
Q ss_pred cCCcccceeeccccccccccccccccccccC-CCCccceeeecccccccCCCCCC-CCCCCcCeEEEcCChh
Q 003300 735 IAFPKLKSLIIGAMEELEEWNYRITRKENIS-IMPRLSSLEVRSCNKLKALPDYL-LQTTTLQDLTIWKCPI 804 (832)
Q Consensus 735 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~ 804 (832)
..+++|+.|++++ .+..... ..+. .+++|+.|++++|......+..+ ..+++|++|++++|+.
T Consensus 429 ~~~~~L~~L~L~~--~l~~~~~-----~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 429 EHCKDLRRLSLSG--LLTDKVF-----EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHCTTCCEEECCS--SCCHHHH-----HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred hhCCCccEEeecC--cccHHHH-----HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 4678889998865 3333221 1222 38899999999987322211122 3489999999999986
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.32 E-value=5.7e-12 Score=130.35 Aligned_cols=163 Identities=21% Similarity=0.188 Sum_probs=107.3
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
+.|++++|.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|. +..+|. +..+++|++|++++|..
T Consensus 49 ~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 49 DQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTTSCC
T ss_pred cEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCCCcC
Confidence 55566777777775 37778888888888888887766 7888888888888876 444544 77788888888888743
Q ss_pred cccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEec
Q 003300 543 LKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGR 622 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 622 (832)
..+ ..+..+++|+.|+ +.+|.+.. +. .+..+++|+.|++++|.
T Consensus 125 -~~~-~~l~~l~~L~~L~--l~~n~l~~-----~~----------------------------~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 125 -SDI-NGLVHLPQLESLY--LGNNKITD-----IT----------------------------VLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp -CCC-GGGGGCTTCCEEE--CCSSCCCC-----CG----------------------------GGGGCTTCSEEECCSSC
T ss_pred -CCC-hhhcCCCCCCEEE--ccCCcCCc-----ch----------------------------hhccCCCCCEEEccCCc
Confidence 333 3466677777776 44444321 11 23344556666666655
Q ss_pred CCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccC
Q 003300 623 VVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~ 683 (832)
+.... .+..+++|+.|++++|....+|. +..+++|+.|++++|.
T Consensus 168 l~~~~----------------~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 168 ISDIV----------------PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCCG----------------GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred cccch----------------hhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 43221 13455677777777777666653 6778888888888885
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.32 E-value=7.7e-12 Score=129.39 Aligned_cols=163 Identities=23% Similarity=0.289 Sum_probs=119.0
Q ss_pred hhcccccEEEecCcccccc-------CCCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEecc
Q 003300 442 SKLACLRALVIRQSLVIRL-------SSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIR 514 (832)
Q Consensus 442 ~~~~~Lr~L~~~~~~~~~~-------~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~ 514 (832)
..+++|+.|.+.++.+... -+++|++++|.++.++. ++++++|++|++++|.++.+|. +..+++|++|+++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 4678899999988764322 14899999999999887 9999999999999999998876 9999999999999
Q ss_pred CccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCC
Q 003300 515 RCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLG 594 (832)
Q Consensus 515 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~ 594 (832)
+|. +..++ .+..+++|++|++++|... .+ ..+..+++|+.|+ +.+|.+.... .+..+++|+.+++.+..
T Consensus 121 ~n~-i~~~~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~--L~~N~l~~~~-----~l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 121 HNG-ISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLS--LEDNQISDIV-----PLAGLTKLQNLYLSKNH 189 (291)
T ss_dssp TSC-CCCCG-GGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEE--CCSSCCCCCG-----GGTTCTTCCEEECCSSC
T ss_pred CCc-CCCCh-hhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEE--ccCCccccch-----hhcCCCccCEEECCCCc
Confidence 987 45554 5889999999999999544 44 4688899999998 6676654321 14455555555555431
Q ss_pred CCCChhhhhhhcccCCCCCCceEEEEecC
Q 003300 595 NVSHLDEAERLQLYNQQNLLRLRLEFGRV 623 (832)
Q Consensus 595 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 623 (832)
+..+ ..+..+++|+.|++++|.+
T Consensus 190 -i~~l-----~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 -ISDL-----RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -CCBC-----GGGTTCTTCSEEEEEEEEE
T ss_pred -CCCC-----hhhccCCCCCEEECcCCcc
Confidence 1111 1244555666666665553
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=3.6e-12 Score=136.50 Aligned_cols=175 Identities=18% Similarity=0.100 Sum_probs=109.0
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCccccccc-cc-CCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKT-LC-ELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~-~~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
++++++++.++.+|..+. ..+++|+|++|.|+.++.. +. ++.+|++|+|++|......|..|..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 677888888888887664 3578888888888877654 44 7888888888887744444456888888888888888
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEE
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEF 620 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 620 (832)
......+..|.++++|+.|+ +.+|.+....+. .+..+++|+.|++++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~--L~~N~i~~~~~~-------------------------------~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLL--LYNNHIVVVDRN-------------------------------AFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEE--CCSSCCCEECTT-------------------------------TTTTCTTCCEEECCS
T ss_pred cCCcCCHHHhCCCcCCCEEE--CCCCcccEECHH-------------------------------HhCCcccCCEEECCC
Confidence 65444444577888888887 555553321111 233345555555555
Q ss_pred ecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCc-hhccccC--CcEEEEeccC
Q 003300 621 GRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPK-WLTSLTN--LRNLYLRSCV 683 (832)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~l~~l~~--L~~L~L~~~~ 683 (832)
|.+...+.. .+..+..+++|+.|++++|....+|. .+..+++ |+.|+|++|.
T Consensus 146 N~l~~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 146 NQISRFPVE-----------LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCCCSCCGG-----------GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CcCCeeCHH-----------HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 554433221 11112345666677777666666653 3455555 3677777775
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=5.2e-11 Score=129.00 Aligned_cols=225 Identities=13% Similarity=0.059 Sum_probs=143.6
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc----c--CCeeEEEEeCCCc-cHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR----N--FEKVIWVCVSDTF-EGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~--f~~~~wv~~~~~~-~~~ 252 (832)
..++||+++++++..++..... ....+.+.|+|++|+|||++|+.+++...... . ...++|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988865321 12456899999999999999999998422111 1 3457888877766 788
Q ss_pred HHHHHHHHHhC-CCCC-CCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhh-hhhhcCCCCCcEEEEEeCCHHH-
Q 003300 253 RVAKAIIEGLG-VSAS-GLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPF-FSCLKNGHHESKILITTRDRSV- 328 (832)
Q Consensus 253 ~~~~~i~~~l~-~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtr~~~~- 328 (832)
.++..++.++. .... ...........+.+.++.++.+||+||++......+... ...+.....+..||+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 88888888873 2211 123345667778888877666999999965322221222 3333322267789999986521
Q ss_pred ---HHHh--CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcC---CChh-HHHHHHHHh--c---
Q 003300 329 ---ALQL--GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCK---GLPL-AAKVIGNLL--R--- 394 (832)
Q Consensus 329 ---~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l--~--- 394 (832)
...+ .....+.+++++.++..+++...+...-. ...-..+....+++.++ |.|. |+..+-.+. .
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI--KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSC--TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcc--cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 1111 11238999999999999999987542110 01112345667778887 8887 444333322 2
Q ss_pred CCCCHHHHHHHHhh
Q 003300 395 SKSTVKEWQRILES 408 (832)
Q Consensus 395 ~~~~~~~w~~~~~~ 408 (832)
..-+.+++..+++.
T Consensus 256 ~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 256 GIIRKEHVDKAIVD 269 (384)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHH
Confidence 12357777776654
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=3e-12 Score=125.47 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=74.5
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCccccccc-ccCCCcccEEeccCccCccccC-cccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDIRRCRNLKELP-AGIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~~ 540 (832)
+.++.+++.++.+|..+ ..+|++|++++|.++.+|.. |.++++|++|++++|... .+| ..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC
Confidence 56777888888888766 45899999999998877654 678899999999987744 444 44678899999999988
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCc
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGG 567 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~ 567 (832)
......+..+.++++|+.|+ +.+|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~--L~~N~ 111 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELA--LNTNQ 111 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEE--CCSSC
T ss_pred cCCccCHhHhcCccCCCEEE--cCCCc
Confidence 55433333467788888887 44554
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=4.2e-12 Score=144.34 Aligned_cols=165 Identities=21% Similarity=0.165 Sum_probs=104.7
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
++.|++++|.+..+| .++.|++|++|+|++|.+..+|. +..+++|++|+|++|. +..+| .+..+++|++|++++|.
T Consensus 45 L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp CCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTSC
T ss_pred CCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCCC
Confidence 366677777776665 46677777777777777776665 6777777777777765 44444 46677777777777764
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
.. .+| .+..|++|+.|+ +.+|.+.. + ..+..+++|+.|+++.|
T Consensus 121 l~-~l~-~l~~l~~L~~L~--Ls~N~l~~-----l----------------------------~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 121 IS-DIN-GLVHLPQLESLY--LGNNKITD-----I----------------------------TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CC-CCG-GGGGCTTCSEEE--CCSSCCCC-----C----------------------------GGGGSCTTCSEEECCSS
T ss_pred CC-CCc-cccCCCccCEEE--CCCCccCC-----c----------------------------hhhcccCCCCEEECcCC
Confidence 33 332 355666666666 44443221 0 12445566777777766
Q ss_pred cCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCchhccccCCcEEEEeccCC
Q 003300 622 RVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVK 684 (832)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~L~~~~~ 684 (832)
.+.... .+..+++|+.|+|++|....+| .+..+++|+.|+|++|..
T Consensus 164 ~l~~~~----------------~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 164 QISDIV----------------PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCCCCG----------------GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred cCCCch----------------hhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 654321 1445677778888777776654 477788888888888853
No 113
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.27 E-value=1.7e-10 Score=125.23 Aligned_cols=206 Identities=15% Similarity=0.085 Sum_probs=139.6
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc-CCeeEEEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i 258 (832)
..++||+.+++++..++.....+.....+.+.|+|.+|+||||+|+.+++. .... -..++|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999887631101123348999999999999999999973 3222 1357788888888888899999
Q ss_pred HHHhCCCCCC-CCcHHHHHHHHHHHHc--CCceEEEEeCCCCCCcccchhhhhhhcCC-C---CCcEEEEEeCCHHHHHH
Q 003300 259 IEGLGVSASG-LSEFESLMKQIQEYIM--GKKFFLVLDDVWDGDYKKWDPFFSCLKNG-H---HESKILITTRDRSVALQ 331 (832)
Q Consensus 259 ~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~---~gs~iivTtr~~~~~~~ 331 (832)
+..++..... ......+...+...+. +++.+||+|+++..+......+...+... . .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9988764332 2345566666666664 66889999999765444455555444321 1 46678888887644332
Q ss_pred hC-------CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHc---------CCChhHHHHH
Q 003300 332 LG-------SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKC---------KGLPLAAKVI 389 (832)
Q Consensus 332 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~ 389 (832)
+. ....+.+.+++.++..+++...+..... ...-..+....+++.+ +|.|..+..+
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 21 1236999999999999999887642111 1122356778888988 7887554433
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=8e-12 Score=123.35 Aligned_cols=103 Identities=18% Similarity=0.239 Sum_probs=73.0
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
+.++++++.++.+|..+. .+|+.|++++|.|+.+|. .|..+++|++|+|++|......|..|..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567777777877777664 577888888888776654 57778888888888877555557777788888888888874
Q ss_pred CcccccCC-CCCCCCCccCCceeeCCccCC
Q 003300 542 SLKYMPVG-ISKLTSLRTLDKFVVGGGIDG 570 (832)
Q Consensus 542 ~~~~~p~~-l~~L~~L~~L~~~~~~~~~~~ 570 (832)
.. .+|.. +.++++|+.|+ +.+|.+..
T Consensus 92 l~-~l~~~~f~~l~~L~~L~--L~~N~l~~ 118 (220)
T 2v9t_B 92 IT-ELPKSLFEGLFSLQLLL--LNANKINC 118 (220)
T ss_dssp CC-CCCTTTTTTCTTCCEEE--CCSSCCCC
T ss_pred CC-ccCHhHccCCCCCCEEE--CCCCCCCE
Confidence 43 44443 57777777777 55665443
No 115
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.27 E-value=1.6e-10 Score=125.23 Aligned_cols=225 Identities=16% Similarity=0.038 Sum_probs=141.4
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc---c-CCeeEEEEeCCCccHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR---N-FEKVIWVCVSDTFEGIRV 254 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~~ 254 (832)
+..++||+.+++++..++...-. ....+.+.|+|++|+||||+|+.+++...... . -...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36799999999999998865311 12456899999999999999999997421110 0 234778888888888899
Q ss_pred HHHHHHHhCCCCCC-CCcHHHHHHHHHHHHc--CCceEEEEeCCCCCCcc--cchhhhhhhcC--C---CCCcEEEEEeC
Q 003300 255 AKAIIEGLGVSASG-LSEFESLMKQIQEYIM--GKKFFLVLDDVWDGDYK--KWDPFFSCLKN--G---HHESKILITTR 324 (832)
Q Consensus 255 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~~~l~~~l~~--~---~~gs~iivTtr 324 (832)
+..++.+++...+. ......+...+...+. +++.+||+|+++..... ..+.+...+.. . ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999999765332 2345666677777773 56889999999653221 12223332221 1 34567888887
Q ss_pred CHHHH----HH-hCC--cCeeeCCCCChHHHHHHHHHHhhcc-CCCCCccchHHHHHHHHHHcC---CChh-HHHHHHHH
Q 003300 325 DRSVA----LQ-LGS--IDIIPVKELGEGECCLLFKQIAFLR-RSFEDREKLEPMGRKIAHKCK---GLPL-AAKVIGNL 392 (832)
Q Consensus 325 ~~~~~----~~-~~~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~ 392 (832)
..... .. ... ...+.+.+++.++...++...+... ...... .+....+++.++ |.|. ++.++..+
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 65221 11 111 1479999999999999999875421 111112 234567777777 9994 33333322
Q ss_pred hc-----C--CCCHHHHHHHHhh
Q 003300 393 LR-----S--KSTVKEWQRILES 408 (832)
Q Consensus 393 l~-----~--~~~~~~w~~~~~~ 408 (832)
.. + .-+.+++..+++.
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAE 275 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHH
Confidence 21 1 1256777766654
No 116
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.26 E-value=1.5e-10 Score=116.79 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=120.9
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++||+..++.+..++.... ..+.+.|+|.+|+||||+|+.+++. ....+... ...+...... ..+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~-~~~~~~~~~~----~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGIT-ATPCGVCDNC----REIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSC-SSCCSCSHHH----HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCC-CCCCcccHHH----HHHh
Confidence 469999999999999997642 2347899999999999999999873 22211100 0000000000 0000
Q ss_pred HHh-----CCCCCCCCcHHHHHHHHHHH-----HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHH
Q 003300 260 EGL-----GVSASGLSEFESLMKQIQEY-----IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVA 329 (832)
Q Consensus 260 ~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~ 329 (832)
... ..........+.. ..+.+. ..+++.+||+||++..+...++.+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 0000000111111 112221 13567899999997766566777777776666678889988764321
Q ss_pred -H-HhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHh
Q 003300 330 -L-QLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLL 393 (832)
Q Consensus 330 -~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 393 (832)
. .......+.+.+++.++..+++...+..... .-..+....|++.++|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1233468999999999999999987754322 1224567899999999999988776543
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=1.2e-11 Score=119.93 Aligned_cols=142 Identities=14% Similarity=0.176 Sum_probs=113.7
Q ss_pred hhcccccEEEecCcccccc-----C--CCcEEecCCCccccccccCCCCceeEEEeCCcCccc-ccccccCCCcccEEec
Q 003300 442 SKLACLRALVIRQSLVIRL-----S--SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIER-LPKTLCELYNLQKLDI 513 (832)
Q Consensus 442 ~~~~~Lr~L~~~~~~~~~~-----~--~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~-lp~~~~~l~~L~~L~L 513 (832)
..+++|+.|.+.++.+... + +++|++++|.++.++ .+..+++|++|++++|.++. .|..++.+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4677899999988765321 1 489999999887765 78899999999999999984 7888999999999999
Q ss_pred cCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecC
Q 003300 514 RRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEG 592 (832)
Q Consensus 514 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~ 592 (832)
++|......|..+..+++|++|++++|..++.+| .+..+++|+.|+ +.+|.+.. +..+..+++|+.+++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~--l~~n~i~~-----~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN--IQFDGVHD-----YRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE--CTTBCCCC-----CTTGGGCSSCCEEEECB
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE--CCCCCCcC-----hHHhccCCCCCEEEeeC
Confidence 9998776778889999999999999996466676 588899999998 66666543 23566667777777765
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=1.6e-11 Score=121.28 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=65.0
Q ss_pred cEEecCCCccccccccCCCCceeEEEeCCcCccccc--ccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 464 PFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLP--KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 464 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
.+++++|.++.+|..+.. .+++|+|++|.|+.++ ..|.++++|++|++++|......|..|..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 444444555444444322 2345555555544442 124445555555555444222222344445555555555543
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
.....|..+.++++|+.|+ +.+|.+....+..+. .+.+|+.+++.+.. +.......+..+++|+.|++++|
T Consensus 93 l~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLM--LRSNRITCVGNDSFI---GLSSVRLLSLYDNQ----ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEE--CTTSCCCCBCTTSST---TCTTCSEEECTTSC----CCCBCTTTTTTCTTCCEEECCSC
T ss_pred cCccCHhHhcCCcCCCEEE--CCCCcCCeECHhHcC---CCccCCEEECCCCc----CCEECHHHhcCCCCCCEEEecCc
Confidence 3332223344445555444 444443332222222 22233333333211 11111123556677788888777
Q ss_pred cCC
Q 003300 622 RVV 624 (832)
Q Consensus 622 ~~~ 624 (832)
.+.
T Consensus 164 ~l~ 166 (220)
T 2v70_A 164 PFN 166 (220)
T ss_dssp CEE
T ss_pred CCc
Confidence 654
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=4.2e-12 Score=129.13 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=60.3
Q ss_pred cEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCc
Q 003300 464 PFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSL 543 (832)
Q Consensus 464 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 543 (832)
.++++++.++.++ .+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++|..
T Consensus 23 ~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~l- 97 (263)
T 1xeu_A 23 KQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRL- 97 (263)
T ss_dssp HHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSCC-
T ss_pred HHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCcc-
Confidence 3455666666665 5666777777777777777776 56777777777777765 444554 77777777777777743
Q ss_pred ccccCCCCCCCCCccCCceeeCCc
Q 003300 544 KYMPVGISKLTSLRTLDKFVVGGG 567 (832)
Q Consensus 544 ~~~p~~l~~L~~L~~L~~~~~~~~ 567 (832)
+.+|. +.. ++|+.|+ +.+|.
T Consensus 98 ~~l~~-~~~-~~L~~L~--L~~N~ 117 (263)
T 1xeu_A 98 KNLNG-IPS-ACLSRLF--LDNNE 117 (263)
T ss_dssp SCCTT-CCC-SSCCEEE--CCSSC
T ss_pred CCcCc-ccc-CcccEEE--ccCCc
Confidence 33443 222 6666665 44444
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=1.3e-11 Score=132.21 Aligned_cols=173 Identities=13% Similarity=0.057 Sum_probs=125.3
Q ss_pred cEEEecCcccccc---C---CCcEEecCCCccccccc-cC-CCCceeEEEeCCcCccccc-ccccCCCcccEEeccCccC
Q 003300 448 RALVIRQSLVIRL---S---SSPFRLHSNLIREIPKN-VG-KLIHLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCRN 518 (832)
Q Consensus 448 r~L~~~~~~~~~~---~---~r~L~L~~n~l~~lp~~-l~-~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~~ 518 (832)
+++.+.++.+... + .++|+|++|.++.++.. +. .+++|++|+|++|.|+.++ ..|.++++|++|+|++|..
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 4666666553222 1 48999999999998765 44 8999999999999999876 4699999999999999885
Q ss_pred ccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCC
Q 003300 519 LKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSH 598 (832)
Q Consensus 519 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~ 598 (832)
....+..|..+++|++|++++|.+....|..+.++++|+.|+ +.+|.+.......+..+..+.+|+.+++.+.. +..
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~--L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 177 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY--LSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKK 177 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE--CCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE--CCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCc
Confidence 444445689999999999999977766678899999999998 77888766544445444567777777777532 111
Q ss_pred hhhhhhhcccCCCC--CCceEEEEecCCCC
Q 003300 599 LDEAERLQLYNQQN--LLRLRLEFGRVVDG 626 (832)
Q Consensus 599 ~~~~~~~~l~~~~~--L~~L~l~~~~~~~~ 626 (832)
+....+..++. ++.|++++|.+...
T Consensus 178 ---l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 178 ---LPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp ---CCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ---cCHHHhhhccHhhcceEEecCCCccCC
Confidence 22223444444 47788888876543
No 121
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=5e-11 Score=129.30 Aligned_cols=203 Identities=16% Similarity=0.113 Sum_probs=132.4
Q ss_pred CCceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC---CeeEEEEeCCCccHHHHH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFEGIRVA 255 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~ 255 (832)
+..|+||+.+++++.+++..... ....+.+.|+|++|+||||||+.+++. ....+ ..++|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999998875311 124568999999999999999999983 33332 357788877666777888
Q ss_pred HHHHHHhCCCCCC-CCcHHHHHHHHHHHHc--CCceEEEEeCCCCCC----cccchhhhhhhcC-CCCCcEEEEEeCCHH
Q 003300 256 KAIIEGLGVSASG-LSEFESLMKQIQEYIM--GKKFFLVLDDVWDGD----YKKWDPFFSCLKN-GHHESKILITTRDRS 327 (832)
Q Consensus 256 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~ 327 (832)
..++.+++..... ..+.......+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8888887654322 2345555666666664 458999999995521 2223333333322 233556788888654
Q ss_pred HHHHhCC-------cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcC---CChhHHH
Q 003300 328 VALQLGS-------IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCK---GLPLAAK 387 (832)
Q Consensus 328 ~~~~~~~-------~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plai~ 387 (832)
....+.. ...+.+++++.++..+++...+..... ...-..+....+++.++ |.|..+.
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 3222111 147999999999999999986532111 11223456677777777 9998433
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=1.1e-11 Score=140.83 Aligned_cols=165 Identities=23% Similarity=0.278 Sum_probs=127.0
Q ss_pred HhhcccccEEEecCcccccc-----C--CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEec
Q 003300 441 FSKLACLRALVIRQSLVIRL-----S--SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDI 513 (832)
Q Consensus 441 f~~~~~Lr~L~~~~~~~~~~-----~--~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L 513 (832)
+..+++|+.|.+.++.+... + ++.|+|++|.+..++. ++.+++|++|+|++|.+..+| .+..+++|++|+|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 34678899999888764322 1 4899999999999887 999999999999999999887 6999999999999
Q ss_pred cCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCC
Q 003300 514 RRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGL 593 (832)
Q Consensus 514 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~ 593 (832)
++|. +..+| .+..|++|+.|++++|... .+ ..+..+++|+.|+ +.+|.+....+ +..+.+|+.|++.+.
T Consensus 117 s~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~--Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 117 EHNG-ISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLS--LEDNQISDIVP-----LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTSC-CCCCG-GGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEE--CCSSCCCCCGG-----GTTCTTCCEEECCSS
T ss_pred cCCC-CCCCc-cccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEE--CcCCcCCCchh-----hccCCCCCEEECcCC
Confidence 9987 44554 5899999999999999554 44 4688999999998 67777554222 556666777777654
Q ss_pred CCCCChhhhhhhcccCCCCCCceEEEEecCC
Q 003300 594 GNVSHLDEAERLQLYNQQNLLRLRLEFGRVV 624 (832)
Q Consensus 594 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 624 (832)
. +..+ ..+..+++|+.|++++|.+.
T Consensus 186 ~-i~~l-----~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 186 H-ISDL-----RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp C-CCBC-----GGGTTCTTCSEEECCSEEEE
T ss_pred C-CCCC-----hHHccCCCCCEEEccCCcCc
Confidence 2 2222 23667788888888887754
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=3.5e-11 Score=118.72 Aligned_cols=105 Identities=24% Similarity=0.290 Sum_probs=89.9
Q ss_pred CCcEEecCCCcccccc-ccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccCc-ccccccCCceeecC
Q 003300 462 SSPFRLHSNLIREIPK-NVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNG 538 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~ 538 (832)
.+.|++++|.++.++. .|..+++|++|+|++|.|+.+ |..|.++++|++|+|++|. +..+|. .|..+++|++|+++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECC
Confidence 4899999999999876 688999999999999999976 7889999999999999987 455665 46889999999999
Q ss_pred CccCcccccCCCCCCCCCccCCceeeCCccC
Q 003300 539 ETYSLKYMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 539 ~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
+|.+....|..+..+++|+.|+ +.+|.+.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~ 141 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLS--LYDNKLQ 141 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEE--CCSSCCS
T ss_pred CCCCCEeCHHHcCCCCCCCEEE--CCCCcCC
Confidence 9977666677899999999998 6677644
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=121.73 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=109.5
Q ss_pred cEEEecCcccccc------CCCcEEecCCCcccccc--ccCCCCceeEEEeCCcCcccccc-cccCCCcccEEeccCccC
Q 003300 448 RALVIRQSLVIRL------SSSPFRLHSNLIREIPK--NVGKLIHLRYLNLSELGIERLPK-TLCELYNLQKLDIRRCRN 518 (832)
Q Consensus 448 r~L~~~~~~~~~~------~~r~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~~~i~~lp~-~~~~l~~L~~L~L~~~~~ 518 (832)
+++.+.++.+... ..++|++++|.++.++. .+..+++|++|+|++|.|+.++. .|.++++|++|+|++|..
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 4677776654222 13899999999998843 47899999999999999997765 799999999999999886
Q ss_pred ccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecC
Q 003300 519 LKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEG 592 (832)
Q Consensus 519 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~ 592 (832)
....|..|..+++|++|++++|.+....|..+..+++|+.|+ +.+|.+....+..+. .+.+|+.+++.+
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~~~~~~~~~---~l~~L~~L~L~~ 162 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS--LYDNQITTVAPGAFD---TLHSLSTLNLLA 162 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE--CTTSCCCCBCTTTTT---TCTTCCEEECCS
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE--CCCCcCCEECHHHhc---CCCCCCEEEecC
Confidence 555556689999999999999977766678899999999999 778877665454444 445555666654
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=3.6e-11 Score=119.50 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=66.3
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccC-cccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELP-AGIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~~ 540 (832)
..++.+++.++.+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++|.. ..+| ..|..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC
Confidence 456777777777776554 6777777777777755 55677777777777777663 4444 34567777777777777
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCcc
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~~ 568 (832)
......+..+..+++|+.|+ +.+|.+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~--Ls~N~l 124 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELF--MCCNKL 124 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEE--CCSSCC
T ss_pred cCCccChhHhCcchhhCeEe--ccCCcc
Confidence 44433333356777777776 555543
No 126
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.19 E-value=7.5e-10 Score=109.75 Aligned_cols=185 Identities=14% Similarity=-0.035 Sum_probs=118.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCC-eeEEEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 258 (832)
.+++|+++.++++.+++.... .+.+.|+|.+|+|||++|+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 469999999999999997542 23489999999999999999987321 11222 23444444333322222111
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHH-H-HhCCcC
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVA-L-QLGSID 336 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~-~-~~~~~~ 336 (832)
........ .-.+++.+||+||++.......+.+...+.....+.++|+||+..... . ......
T Consensus 90 ~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11111000 012578899999997765555666666666556678889988865321 1 123344
Q ss_pred eeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHH
Q 003300 337 IIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIG 390 (832)
Q Consensus 337 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 390 (832)
.+.+.+++.++...++.+.+..... .-..+....+++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999987653322 1224567789999999998655443
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=5.3e-11 Score=114.60 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=80.1
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
+++++++|.++.+|..+. .+|++|++++|.|+.+|..|.++++|++|++++|......|..|..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 567888888888887664 578888888888888888888888888888888875555556688888888888888866
Q ss_pred cccccCCCCCCCCCccCCceeeCCccC
Q 003300 543 LKYMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
....|..|..+++|+.|+ +.+|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~--L~~N~l~ 115 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLS--LHGNDIS 115 (193)
T ss_dssp CBCCTTTTTTCTTCCEEE--CCSSCCC
T ss_pred CEeCHHHhCCCCCCCEEE--CCCCCCC
Confidence 555555688888888887 5566543
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=4.3e-11 Score=115.30 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=80.4
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCccccccc--ccCCCcccEEeccCccCccccCcccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKT--LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~--~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 540 (832)
+++++++|.++.+|..+.. +|++|++++|.|+.++.. |.++++|++|++++|......|..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888888877654 888888888888877653 788888888888888766666778888888888888888
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCccC
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
.+....|..+.++++|+.|+ +.+|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~--L~~N~l~ 115 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLN--LYDNQIS 115 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEE--CCSSCCC
T ss_pred cCCccCHHHhcCCCCCCEEE--CCCCcCC
Confidence 66655555688888888887 6666543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=9.3e-12 Score=114.68 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=82.7
Q ss_pred CCcEEecCCCcc--ccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCC
Q 003300 462 SSPFRLHSNLIR--EIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 539 (832)
Q Consensus 462 ~r~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 539 (832)
.+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.....+|..+..+++|++|++++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 367788888887 7888888889999999999988877 6788889999999998876555777777788999999998
Q ss_pred ccCccc-ccCCCCCCCCCccCCceeeCCccCC
Q 003300 540 TYSLKY-MPVGISKLTSLRTLDKFVVGGGIDG 570 (832)
Q Consensus 540 ~~~~~~-~p~~l~~L~~L~~L~~~~~~~~~~~ 570 (832)
|..... .|..++.+++|+.|+ +.+|.+..
T Consensus 98 N~i~~~~~~~~~~~l~~L~~L~--l~~N~l~~ 127 (149)
T 2je0_A 98 NKIKDLSTIEPLKKLENLKSLD--LFNCEVTN 127 (149)
T ss_dssp SCCCSHHHHGGGGGCTTCCEEE--CTTCGGGG
T ss_pred CcCCChHHHHHHhhCCCCCEEe--CcCCcccc
Confidence 854332 236678888888887 66666443
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=7e-11 Score=117.43 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=86.5
Q ss_pred CCcEEecCCCcccc-ccccCCCCceeEEEeCCcCccccccc-ccCCCcccEEeccCccCccccCcccccccCCceeecCC
Q 003300 462 SSPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 539 (832)
Q Consensus 462 ~r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 539 (832)
+++|+|++|.++.+ |..+..+++|++|+|++|.|+.+|.. |..+++|++|+|++|......+..|..+++|++|++++
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 121 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC
Confidence 48899999999887 66788999999999999999988754 68999999999999874443344578899999999999
Q ss_pred ccCcccccCCCCCCCCCccCCceeeCCccC
Q 003300 540 TYSLKYMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 540 ~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
|. +..+|..+.++++|+.|+ +.+|.+.
T Consensus 122 N~-l~~lp~~~~~l~~L~~L~--L~~N~l~ 148 (229)
T 3e6j_A 122 NK-LTELPRGIERLTHLTHLA--LDQNQLK 148 (229)
T ss_dssp SC-CCSCCTTGGGCTTCSEEE--CCSSCCC
T ss_pred Cc-ccccCcccccCCCCCEEE--CCCCcCC
Confidence 95 457888888999999998 6666644
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=1.6e-11 Score=115.77 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=78.2
Q ss_pred CCcEEecCCCcc--ccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCC
Q 003300 462 SSPFRLHSNLIR--EIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 539 (832)
Q Consensus 462 ~r~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 539 (832)
.++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|++++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 367788888887 7888888888888888888888877 6788888888888888875555777677788888888888
Q ss_pred ccCccccc--CCCCCCCCCccCCceeeCCcc
Q 003300 540 TYSLKYMP--VGISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 540 ~~~~~~~p--~~l~~L~~L~~L~~~~~~~~~ 568 (832)
|.. +.+| ..+..+++|+.|+ +.+|.+
T Consensus 105 N~l-~~~~~~~~l~~l~~L~~L~--l~~N~l 132 (168)
T 2ell_A 105 NKL-KDISTLEPLKKLECLKSLD--LFNCEV 132 (168)
T ss_dssp SSC-CSSGGGGGGSSCSCCCEEE--CCSSGG
T ss_pred Ccc-CcchhHHHHhcCCCCCEEE--eeCCcC
Confidence 843 4444 5677777787777 555543
No 132
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=1.2e-10 Score=118.24 Aligned_cols=143 Identities=20% Similarity=0.233 Sum_probs=100.1
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
+++|++++|.++.+| .++.+++|++|++++|.++.+|. +.++++|++|++++|. +..+|. +.. ++|++|++++|.
T Consensus 43 L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 43 VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSRLFLDNNE 117 (263)
T ss_dssp CSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCEEECCSSC
T ss_pred CcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-CcccEEEccCCc
Confidence 367788888888887 68888999999999999988877 8899999999999976 555665 333 889999999885
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEe
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFG 621 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 621 (832)
. +.++ .+.++++|+.|+ +.+|.+.. +..+..+++|+.+++.+..- ... ..+..+++|+.|++++|
T Consensus 118 l-~~~~-~l~~l~~L~~L~--Ls~N~i~~-----~~~l~~l~~L~~L~L~~N~i-~~~-----~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 118 L-RDTD-SLIHLKNLEILS--IRNNKLKS-----IVMLGFLSKLEVLDLHGNEI-TNT-----GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp C-SBSG-GGTTCTTCCEEE--CTTSCCCB-----CGGGGGCTTCCEEECTTSCC-CBC-----TTSTTCCCCCEEEEEEE
T ss_pred c-CCCh-hhcCcccccEEE--CCCCcCCC-----ChHHccCCCCCEEECCCCcC-cch-----HHhccCCCCCEEeCCCC
Confidence 4 4444 588888888888 66666543 22445555566666554321 111 23555666777777766
Q ss_pred cCC
Q 003300 622 RVV 624 (832)
Q Consensus 622 ~~~ 624 (832)
.+.
T Consensus 183 ~~~ 185 (263)
T 1xeu_A 183 KCV 185 (263)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=8.5e-11 Score=113.24 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=100.8
Q ss_pred cEEEecCcccccc------CCCcEEecCCCccccccc--cCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccC
Q 003300 448 RALVIRQSLVIRL------SSSPFRLHSNLIREIPKN--VGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRN 518 (832)
Q Consensus 448 r~L~~~~~~~~~~------~~r~L~L~~n~l~~lp~~--l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~ 518 (832)
+++.+.++.+... ..++|++++|.++.++.. ++.+++|++|+|++|.|+.+ |..|.++++|++|+|++|..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 5677776654221 248999999999998864 89999999999999999976 77899999999999999986
Q ss_pred ccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCceeeCCccC
Q 003300 519 LKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 519 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
....|..|..+++|++|++++|......|..+..+++|+.|+ +.+|.+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~ 139 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN--LASNPFN 139 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE--CTTCCBC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE--eCCCCcc
Confidence 666666799999999999999987777788899999999998 6677643
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.15 E-value=7.3e-11 Score=132.51 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=61.5
Q ss_pred CceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCCce
Q 003300 483 IHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKF 562 (832)
Q Consensus 483 ~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~ 562 (832)
.+|++|++++|.++.+|..+. ++|++|++++|. +..+| ..+++|++|++++|.+ +.+|. +.+ +|+.|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~-- 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLD-- 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEE--
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEE--
Confidence 389999999999999998774 799999999987 55788 4589999999999955 44787 665 888888
Q ss_pred eeCCccC
Q 003300 563 VVGGGID 569 (832)
Q Consensus 563 ~~~~~~~ 569 (832)
+.+|.+.
T Consensus 127 Ls~N~l~ 133 (571)
T 3cvr_A 127 VDNNQLT 133 (571)
T ss_dssp CCSSCCS
T ss_pred CCCCcCC
Confidence 6666654
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.5e-10 Score=111.38 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=96.3
Q ss_pred cEEEecCcccccc------CCCcEEecCCCccccccccCCCCceeEEEeCCcCccccc-ccccCCCcccEEeccCccCcc
Q 003300 448 RALVIRQSLVIRL------SSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCRNLK 520 (832)
Q Consensus 448 r~L~~~~~~~~~~------~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~ 520 (832)
+++.+.++.+... -.++|++++|.++.+|..+.++++|++|+|++|.|+.++ ..|.++++|++|+|++|....
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 4556666553221 148999999999999999999999999999999999776 469999999999999998665
Q ss_pred ccCcccccccCCceeecCCccCcccccC-CCCCCCCCccCCceeeCCcc
Q 003300 521 ELPAGIGKLKNMRSLLNGETYSLKYMPV-GISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 521 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~l~~L~~L~~L~~~~~~~~~ 568 (832)
..|..|..+++|++|++++|.+. .+|. .+..+++|+.|+ +.+|.+
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~--L~~N~~ 138 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLA--IGANPL 138 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEE--CCSSCE
T ss_pred eCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEE--eCCCCe
Confidence 55667999999999999999655 4554 588899999998 666653
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=4e-11 Score=135.49 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=91.9
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
+++|+|++|.++.+|. ++.+++|++|+|++|.|+.+|..|+++++|++|+|++|. +..+| .++.+++|++|++++|.
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCC
Confidence 5889999999999987 999999999999999999999999999999999999987 55588 79999999999999996
Q ss_pred Ccccc-cCCCCCCCCCccCCceeeCCccCC
Q 003300 542 SLKYM-PVGISKLTSLRTLDKFVVGGGIDG 570 (832)
Q Consensus 542 ~~~~~-p~~l~~L~~L~~L~~~~~~~~~~~ 570 (832)
+.... |..++++++|+.|+ +.+|.+.+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~--L~~N~l~~ 547 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLN--LQGNSLCQ 547 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEE--CTTSGGGG
T ss_pred CCCCCCcHHHhcCCCCCEEE--ecCCcCCC
Confidence 65544 88899999999998 77777544
No 137
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=3e-10 Score=111.18 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=93.8
Q ss_pred CCcEEecCCCccccccc-cCCCCceeEEEeCCcCccccccc-ccCCCcccEEeccCccCccccCcccccccCCceeecCC
Q 003300 462 SSPFRLHSNLIREIPKN-VGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 539 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 539 (832)
.++|++++|.++.++.. +..+++|++|++++|.++.+|.. |..+++|++|++++|......+..+..+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 48899999999988765 67899999999999999988764 68899999999999875443344578999999999999
Q ss_pred ccCcccccCCCCCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecC
Q 003300 540 TYSLKYMPVGISKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEG 592 (832)
Q Consensus 540 ~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~ 592 (832)
|......+..+.++++|+.|+ +.+|.+....... +..+.+|+.+++.+
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~--l~~N~l~~~~~~~---~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLR--LYQNQLKSVPDGV---FDRLTSLQYIWLHD 157 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEE--CCSSCCSCCCTTT---TTTCTTCCEEECCS
T ss_pred CcCcccCHhHhccCCcCCEEE--CCCCccceeCHHH---hccCCCccEEEecC
Confidence 965544444478899999998 6677655433322 33444555555554
No 138
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=1.6e-10 Score=108.83 Aligned_cols=119 Identities=24% Similarity=0.201 Sum_probs=99.1
Q ss_pred cccccEEEecCcccc--ccC--------CCcEEecCCCccccccccCCCCceeEEEeCCcCccc-ccccccCCCcccEEe
Q 003300 444 LACLRALVIRQSLVI--RLS--------SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIER-LPKTLCELYNLQKLD 512 (832)
Q Consensus 444 ~~~Lr~L~~~~~~~~--~~~--------~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~-lp~~~~~l~~L~~L~ 512 (832)
.++|+.|.+.++.+. ... +++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 477999999887754 111 48999999999988 889999999999999999997 788788899999999
Q ss_pred ccCccCccccC--cccccccCCceeecCCccCcccccC----CCCCCCCCccCCceeeCCc
Q 003300 513 IRRCRNLKELP--AGIGKLKNMRSLLNGETYSLKYMPV----GISKLTSLRTLDKFVVGGG 567 (832)
Q Consensus 513 L~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~----~l~~L~~L~~L~~~~~~~~ 567 (832)
+++|. +..+| ..+..+++|++|++++|.. ..+|. .+..+++|+.|+ ..++.
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~--l~~n~ 158 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLD--GYDRE 158 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEET--TEETT
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEec--CCCCC
Confidence 99987 55555 6789999999999999954 45555 688999999999 55554
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=7.9e-11 Score=111.77 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=48.6
Q ss_pred CcEEecCCCccccccccCCCC-ceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCccc-ccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVGKLI-HLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGI-GKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~-~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~l~~~ 540 (832)
++|++++|.++.+|. +..+. +|++|++++|.++.+ ..+..+++|++|++++|. +..+|..+ ..+++|++|++++|
T Consensus 22 ~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 22 RELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp EEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC
T ss_pred eEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC
Confidence 444555555555432 33333 555555555555554 345555555555555554 23333332 55555555555555
Q ss_pred cCcccccC--CCCCCCCCccCCceeeCCcc
Q 003300 541 YSLKYMPV--GISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 541 ~~~~~~p~--~l~~L~~L~~L~~~~~~~~~ 568 (832)
.. +.+|. .+..+++|+.|+ +.+|.+
T Consensus 99 ~i-~~~~~~~~l~~l~~L~~L~--l~~N~i 125 (176)
T 1a9n_A 99 SL-VELGDLDPLASLKSLTYLC--ILRNPV 125 (176)
T ss_dssp CC-CCGGGGGGGGGCTTCCEEE--CCSSGG
T ss_pred cC-CcchhhHhhhcCCCCCEEE--ecCCCC
Confidence 32 33443 444555555555 444443
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=5.3e-11 Score=138.92 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=50.2
Q ss_pred HHhhcccccEEEecCcccccc--------CCCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEE
Q 003300 440 LFSKLACLRALVIRQSLVIRL--------SSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKL 511 (832)
Q Consensus 440 ~f~~~~~Lr~L~~~~~~~~~~--------~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L 511 (832)
.|..+.+|+.|.+.+|.+... .+++|+|++|.++.+|..|++|++|++|+|++|.|+.+|..|++|.+|++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 344555566655554432111 024555555555555555555555555555555555555555555555555
Q ss_pred eccCccCccccCcccccccCCceeecCCccCccccc
Q 003300 512 DIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMP 547 (832)
Q Consensus 512 ~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p 547 (832)
+|++|. +..+|..|+.|++|++|++++|.....+|
T Consensus 299 ~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 299 YFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp ECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred ECCCCC-CCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 555543 33444445555555555555554333333
No 141
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=2.8e-09 Score=112.29 Aligned_cols=187 Identities=14% Similarity=0.095 Sum_probs=118.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC-CeeEEEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 258 (832)
.+++|++..++.+..++... ..+.+.++|++|+|||++|+.+++... ...+ ...++++.+....... .+.+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 46999999999999998754 223389999999999999999997321 1111 1244444443222221 1111
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHH-HH-HhCCc
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSV-AL-QLGSI 335 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~-~~-~~~~~ 335 (832)
+..+.... ..+ .+++.++|+||++.-....++.+...+.....++++|+||+...- .. .....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 11111000 001 345889999999776555566666666655567888888876432 11 12334
Q ss_pred CeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh-HHHHHHHH
Q 003300 336 DIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL-AAKVIGNL 392 (832)
Q Consensus 336 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~ 392 (832)
..+.+.+++.++...++...+...+. .-..+....+++.++|.|. |+..+...
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDV----KYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 58999999999999999987643322 1224567889999999995 44544433
No 142
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=1.3e-10 Score=107.02 Aligned_cols=115 Identities=23% Similarity=0.213 Sum_probs=96.1
Q ss_pred hcccccEEEecCcccc--ccC--------CCcEEecCCCccccccccCCCCceeEEEeCCcCccc-ccccccCCCcccEE
Q 003300 443 KLACLRALVIRQSLVI--RLS--------SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIER-LPKTLCELYNLQKL 511 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~~--~~~--------~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~-lp~~~~~l~~L~~L 511 (832)
..++|+.|.+.++.+. ... +++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999987754 111 38999999999998 789999999999999999997 88888889999999
Q ss_pred eccCccCccccC--cccccccCCceeecCCccCcccccC----CCCCCCCCccCC
Q 003300 512 DIRRCRNLKELP--AGIGKLKNMRSLLNGETYSLKYMPV----GISKLTSLRTLD 560 (832)
Q Consensus 512 ~L~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~----~l~~L~~L~~L~ 560 (832)
++++|. +..+| ..+..+++|++|++++|.. ...|. .+..+++|+.|+
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEET
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCccccc
Confidence 999987 44443 7799999999999999954 44554 578888999887
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=5.6e-10 Score=105.00 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=84.1
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccCc-ccccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~~ 540 (832)
+++++++|.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++|... .+|. .|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCC
Confidence 678999999999998774 8899999999999977 667999999999999998744 5554 5689999999999999
Q ss_pred cCcccccCCCCCCCCCccCCceeeCCccC
Q 003300 541 YSLKYMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 541 ~~~~~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
......+..+.++++|+.|+ +.+|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~--L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIW--LLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEE--CCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEE--eCCCCCC
Confidence 65443344588999999998 6677643
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=8.9e-10 Score=103.95 Aligned_cols=101 Identities=23% Similarity=0.329 Sum_probs=84.2
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccc-cccccCCCcccEEeccCccCccccCcc-cccccCCceeecCCc
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERL-PKTLCELYNLQKLDIRRCRNLKELPAG-IGKLKNMRSLLNGET 540 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~l~~~ 540 (832)
+.+++++|.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++|. +..+|.. |..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 678999999999998875 8999999999999977 6678999999999999987 5556654 689999999999999
Q ss_pred cCcccccCC-CCCCCCCccCCceeeCCccC
Q 003300 541 YSLKYMPVG-ISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 541 ~~~~~~p~~-l~~L~~L~~L~~~~~~~~~~ 569 (832)
.+. .+|.. +..+++|+.|+ +.+|.+.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~--L~~N~~~ 118 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIY--LYNNPWD 118 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEE--CCSSCBC
T ss_pred ccc-eeCHHHhccccCCCEEE--eCCCCcc
Confidence 554 55554 88999999998 6677643
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=2.4e-10 Score=108.44 Aligned_cols=115 Identities=23% Similarity=0.190 Sum_probs=62.7
Q ss_pred hcccccEEEecCcccccc--------CCCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccc-cCCCcccEEec
Q 003300 443 KLACLRALVIRQSLVIRL--------SSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTL-CELYNLQKLDI 513 (832)
Q Consensus 443 ~~~~Lr~L~~~~~~~~~~--------~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~-~~l~~L~~L~L 513 (832)
++.+|+.|.+.++.+... -+++|++++|.++.+ ..++.+++|++|++++|.|+.+|..+ ..+++|++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 345566666655542111 135666666666655 45556666666666666666555443 55666666666
Q ss_pred cCccCccccCc--ccccccCCceeecCCccCcccccCC----CCCCCCCccCC
Q 003300 514 RRCRNLKELPA--GIGKLKNMRSLLNGETYSLKYMPVG----ISKLTSLRTLD 560 (832)
Q Consensus 514 ~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~----l~~L~~L~~L~ 560 (832)
++|. +..+|. .+..+++|++|++++|.. ..+|.. +..+++|+.|+
T Consensus 96 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 96 TNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEET
T ss_pred CCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeC
Confidence 6654 344554 455666666666666633 334432 44555555555
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.96 E-value=2.8e-09 Score=101.11 Aligned_cols=95 Identities=21% Similarity=0.211 Sum_probs=40.2
Q ss_pred cEEecCCCccccccccCCCCceeEEEeCCcCccccccc-ccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 464 PFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 464 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
.++++++.++.+|..+. .+|++|++++|.++.+|.. |.++++|++|++++|......+..+..+++|++|++++|..
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 34444444444443332 3445555555544444332 34444555555554432221122234444555555554433
Q ss_pred cccccCCCCCCCCCccCC
Q 003300 543 LKYMPVGISKLTSLRTLD 560 (832)
Q Consensus 543 ~~~~p~~l~~L~~L~~L~ 560 (832)
....+..+.++++|+.|+
T Consensus 89 ~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CCCCTTTTTTCTTCCEEE
T ss_pred cccCHHHhhCCcccCEEE
Confidence 222222234444444444
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.95 E-value=1.5e-10 Score=135.21 Aligned_cols=107 Identities=25% Similarity=0.324 Sum_probs=86.5
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCcc
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETY 541 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 541 (832)
+++|+|++|.+..+|..++++++|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|+.|++|++|+|++|.
T Consensus 226 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp CCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC
T ss_pred CcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC
Confidence 47888888888888888888888888888888888888888888888888888877 44778888888888888888884
Q ss_pred CcccccCCCCCCCCCccCCceeeCCccCCCC
Q 003300 542 SLKYMPVGISKLTSLRTLDKFVVGGGIDGSN 572 (832)
Q Consensus 542 ~~~~~p~~l~~L~~L~~L~~~~~~~~~~~~~ 572 (832)
++.+|..|++|++|+.|+ +.+|.+.+..
T Consensus 305 -l~~lp~~~~~l~~L~~L~--L~~N~l~~~~ 332 (727)
T 4b8c_D 305 -VTTLPWEFGNLCNLQFLG--VEGNPLEKQF 332 (727)
T ss_dssp -CCCCCSSTTSCTTCCCEE--CTTSCCCSHH
T ss_pred -CCccChhhhcCCCccEEe--CCCCccCCCC
Confidence 457788888888888888 6677655433
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.93 E-value=2.9e-09 Score=101.02 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=90.4
Q ss_pred cEEEecCcccccc------CCCcEEecCCCccccccc-cCCCCceeEEEeCCcCccccccc-ccCCCcccEEeccCccCc
Q 003300 448 RALVIRQSLVIRL------SSSPFRLHSNLIREIPKN-VGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDIRRCRNL 519 (832)
Q Consensus 448 r~L~~~~~~~~~~------~~r~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L~~~~~~ 519 (832)
+.+.+.++.+... .+++|++++|.++.+|.. ++.+++|++|++++|.++.+|.. |.++++|++|++++|...
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 4566665553221 248999999999988764 68899999999999999988765 689999999999998755
Q ss_pred cccCcccccccCCceeecCCccCcccccCC-CCCCCCCccCCceeeCCcc
Q 003300 520 KELPAGIGKLKNMRSLLNGETYSLKYMPVG-ISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 520 ~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~-l~~L~~L~~L~~~~~~~~~ 568 (832)
...+..+..+++|++|++++|... .+|.. +..+++|+.|+ +.+|.+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~--l~~N~~ 136 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIW--LHTNPW 136 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEE--CCSSCB
T ss_pred ccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEE--ecCCCe
Confidence 444445788999999999999554 55554 57888999888 666654
No 149
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.93 E-value=1.5e-09 Score=122.52 Aligned_cols=114 Identities=18% Similarity=0.116 Sum_probs=94.4
Q ss_pred ccccEEEecCccccccC-------CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCcc
Q 003300 445 ACLRALVIRQSLVIRLS-------SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCR 517 (832)
Q Consensus 445 ~~Lr~L~~~~~~~~~~~-------~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~ 517 (832)
..|+.|.+.+|.+...+ +++|+|++|.++.+|..++++++|++|+|++|.|+.+| .++++++|++|+|++|.
T Consensus 441 ~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 36899999988753321 48999999999999999999999999999999999998 89999999999999988
Q ss_pred Ccccc-CcccccccCCceeecCCccCcccccCCCC----CCCCCccCC
Q 003300 518 NLKEL-PAGIGKLKNMRSLLNGETYSLKYMPVGIS----KLTSLRTLD 560 (832)
Q Consensus 518 ~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~l~----~L~~L~~L~ 560 (832)
..... |..++.+++|+.|++++|.. ...|+.+. .+++|+.|+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccC
Confidence 55544 89999999999999999954 44554433 256666653
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=2.1e-09 Score=113.29 Aligned_cols=57 Identities=11% Similarity=0.009 Sum_probs=40.8
Q ss_pred ccCCcccc-eeeccccccccccccccccccccCCCCccceeeecccccccCCCC-CCCCCCCcCeEE
Q 003300 734 VIAFPKLK-SLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLT 798 (832)
Q Consensus 734 ~~~~~~L~-~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 798 (832)
+.++++|+ .+.+.+ +++.+ ....+..+++|+.|++.++. ++.++. .+.++++|+.|+
T Consensus 269 F~~~~~L~~~l~l~~--~l~~I-----~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA--SVTAI-----EFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTCCEEEEECT--TCCEE-----CTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred hhCChhccEEEEEcc--cceEE-----chhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 56777888 887765 44433 33567788899999987755 777776 566788888876
No 151
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=3.1e-08 Score=104.32 Aligned_cols=183 Identities=14% Similarity=0.031 Sum_probs=116.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC-CeeEEEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 258 (832)
.+++|+++.++.+..++... ..+.+.++|++|+|||++|+.+++... ...+ ...+.+..+....... .+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINV-IREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHT-THHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHH-HHHH
Confidence 46999999999999988764 233489999999999999999997321 1111 1234444333211111 1111
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHH---HHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHH-HHH-hC
Q 003300 259 IEGLGVSASGLSEFESLMKQIQE---YIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSV-ALQ-LG 333 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~---~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~-~~~-~~ 333 (832)
+. .... ...+++.++|+||++.-....+..+...+.....+.++|+||..... ... ..
T Consensus 97 ~~-----------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 97 VK-----------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp HH-----------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HH-----------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 11 1100 11256789999999776555666677666655667889988876431 111 12
Q ss_pred CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHH
Q 003300 334 SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGN 391 (832)
Q Consensus 334 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 391 (832)
....+.+.+++.++...++...+...+. .-..+....|++.++|.|..+..+..
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2347899999999999999887653322 12346678899999999986554443
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.77 E-value=2e-10 Score=111.38 Aligned_cols=100 Identities=24% Similarity=0.280 Sum_probs=66.1
Q ss_pred CcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccC
Q 003300 463 SPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 463 r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 542 (832)
++|++++|.++.+| .++++++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|..
T Consensus 51 ~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 51 KHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp SEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEEC
T ss_pred CEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCcC
Confidence 45566666666666 6677777777777777777777766667777777777765 44455 466777777777777743
Q ss_pred ccccc--CCCCCCCCCccCCceeeCCcc
Q 003300 543 LKYMP--VGISKLTSLRTLDKFVVGGGI 568 (832)
Q Consensus 543 ~~~~p--~~l~~L~~L~~L~~~~~~~~~ 568 (832)
. .+| ..+..+++|+.|+ +.+|.+
T Consensus 128 ~-~~~~~~~l~~l~~L~~L~--l~~N~l 152 (198)
T 1ds9_A 128 T-NWGEIDKLAALDKLEDLL--LAGNPL 152 (198)
T ss_dssp C-CHHHHHHHTTTTTCSEEE--ECSCHH
T ss_pred C-chhHHHHHhcCCCCCEEE--ecCCcc
Confidence 3 323 2466677777776 555553
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.75 E-value=2.2e-08 Score=94.02 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=78.4
Q ss_pred ccEEEecCcccccc------CCCcEEecCCCcccc-ccccCCCCceeEEEeCCcCccccccc-ccCCCcccEEeccCccC
Q 003300 447 LRALVIRQSLVIRL------SSSPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDIRRCRN 518 (832)
Q Consensus 447 Lr~L~~~~~~~~~~------~~r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L~~~~~ 518 (832)
.+.+.+.++.+... .+++|+|++|.++.+ |..|..+++|++|+|++|.|+.+|.. |.++++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~- 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ- 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-
Confidence 45677777664322 148999999999998 56789999999999999999988775 6899999999999987
Q ss_pred ccccCc-ccccccCCceeecCCccC
Q 003300 519 LKELPA-GIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 519 ~~~lp~-~l~~l~~L~~L~l~~~~~ 542 (832)
+..+|. .|..+++|++|++++|..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 445554 589999999999999954
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=6.8e-11 Score=114.67 Aligned_cols=144 Identities=22% Similarity=0.200 Sum_probs=103.5
Q ss_pred CccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCCC
Q 003300 471 LIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGI 550 (832)
Q Consensus 471 ~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l 550 (832)
.++.+|..++.+++|++|++++|.++.+| .+.++++|++|++++|. +..+|..+..+++|++|++++|.. +.+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l-~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI-ASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEEC-CCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcC-CcCC-cc
Confidence 57777888999999999999999999888 88999999999999986 557888788889999999999854 4456 57
Q ss_pred CCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCC------hhhhhhhcccCCCCCCceEEEEecCC
Q 003300 551 SKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSH------LDEAERLQLYNQQNLLRLRLEFGRVV 624 (832)
Q Consensus 551 ~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~------~~~~~~~~l~~~~~L~~L~l~~~~~~ 624 (832)
..+++|+.|+ +.+|.+... ..+..+..+++|+.+++.+..-... ........+..+++|+.|+ .+.+.
T Consensus 112 ~~l~~L~~L~--l~~N~i~~~--~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 112 EKLVNLRVLY--MSNNKITNW--GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHSSEEE--ESEEECCCH--HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccCCCCCEEE--CCCCcCCch--hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7888999988 666664421 1123456677777777775321000 0222233467788898876 55444
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=2.5e-08 Score=93.88 Aligned_cols=94 Identities=18% Similarity=0.300 Sum_probs=77.6
Q ss_pred cEEEecCcccccc------CCCcEEecCCCcccc-ccccCCCCceeEEEeCCcCccccccc-ccCCCcccEEeccCccCc
Q 003300 448 RALVIRQSLVIRL------SSSPFRLHSNLIREI-PKNVGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDIRRCRNL 519 (832)
Q Consensus 448 r~L~~~~~~~~~~------~~r~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L~~~~~~ 519 (832)
+.+.+.++.+... .+++|+|++|.++.+ |..|+++++|++|+|++|.|+.+|.. |.++++|++|+|++|. +
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-L 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-c
Confidence 4566666654222 248999999999998 56789999999999999999999876 5899999999999987 5
Q ss_pred cccCc-ccccccCCceeecCCccC
Q 003300 520 KELPA-GIGKLKNMRSLLNGETYS 542 (832)
Q Consensus 520 ~~lp~-~l~~l~~L~~L~l~~~~~ 542 (832)
..+|. .|..+++|++|++++|..
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ceeCHHHhccccCCCEEEeCCCCc
Confidence 56665 489999999999999943
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.71 E-value=2.5e-08 Score=106.11 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=84.2
Q ss_pred CcEEecCC-CccccccccCCCCceeEEEeCC-cCccccc-ccccCCCcccEEeccCccCccccCcccccccCCceeecCC
Q 003300 463 SPFRLHSN-LIREIPKNVGKLIHLRYLNLSE-LGIERLP-KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 539 (832)
Q Consensus 463 r~L~L~~n-~l~~lp~~l~~l~~L~~L~Ls~-~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 539 (832)
..++++++ .++.+|. +..+.+|++|+|++ |.|+.+| ..|.+|.+|++|+|++|......|..|.+|++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45688888 8999999 99999999999996 9999887 5699999999999999986666667789999999999999
Q ss_pred ccCcccccCCCCCCCCCccCCceeeCCccC
Q 003300 540 TYSLKYMPVGISKLTSLRTLDKFVVGGGID 569 (832)
Q Consensus 540 ~~~~~~~p~~l~~L~~L~~L~~~~~~~~~~ 569 (832)
|.. ..+|..+....+|+.|+ +.+|.+.
T Consensus 90 N~l-~~~~~~~~~~~~L~~l~--l~~N~~~ 116 (347)
T 2ifg_A 90 NAL-ESLSWKTVQGLSLQELV--LSGNPLH 116 (347)
T ss_dssp SCC-SCCCSTTTCSCCCCEEE--CCSSCCC
T ss_pred Ccc-ceeCHHHcccCCceEEE--eeCCCcc
Confidence 955 55665543333488888 6666643
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.70 E-value=2.7e-07 Score=99.13 Aligned_cols=195 Identities=15% Similarity=0.144 Sum_probs=116.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|++..++.+...+.... ....+.|+|..|+||||+|+.+++.......+. ...+..... ...+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~~~----~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVCDN----CREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSSHH----HHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCcccHH----HHHHh
Confidence 459999999999999987542 234788999999999999999987321111110 000000000 00111
Q ss_pred HH-------hCCC-CCCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHH-H
Q 003300 260 EG-------LGVS-ASGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSV-A 329 (832)
Q Consensus 260 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~-~ 329 (832)
.. +... .....+...+...+... ..+++.++|+||++.-+...+..+...+.....+..+|++|....- .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000 01112233222222111 1356789999999766555666677777665566778877764421 1
Q ss_pred -HHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHH
Q 003300 330 -LQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIG 390 (832)
Q Consensus 330 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 390 (832)
........+.+.+++.++...++.+.+...+. .-..+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11233568999999999999999877643221 1224567789999999998776554
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3.2e-07 Score=93.89 Aligned_cols=172 Identities=9% Similarity=-0.023 Sum_probs=107.6
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc---cC--CeeEEEEeCCCccHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR---NF--EKVIWVCVSDTFEGIRVA 255 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~f--~~~~wv~~~~~~~~~~~~ 255 (832)
.+.||+++++++...|...-. .+..+.+.|+|.+|+|||++|+.++++..... .. -..+.|++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 388999999999988875422 23567889999999999999999998532111 11 136677777778888999
Q ss_pred HHHHHHhCCCCCC-CCcHHHHHHHHHHHH---cCCceEEEEeCCCCCCcccchhhhhhhcC-CCCCcE--EEEEeCCHH-
Q 003300 256 KAIIEGLGVSASG-LSEFESLMKQIQEYI---MGKKFFLVLDDVWDGDYKKWDPFFSCLKN-GHHESK--ILITTRDRS- 327 (832)
Q Consensus 256 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~--iivTtr~~~- 327 (832)
..|++++...... ....+.+ ..+...+ +++++++++|+++.-. .-+.+...+.+ ....++ ||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L-~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEAL-NFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHH-HHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHhcCCCCCchHHHHHH-HHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 9999999654322 2223333 3333332 4678999999996543 22334444332 112233 334443321
Q ss_pred ----HH----HHhCCcCeeeCCCCChHHHHHHHHHHhhc
Q 003300 328 ----VA----LQLGSIDIIPVKELGEGECCLLFKQIAFL 358 (832)
Q Consensus 328 ----~~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 358 (832)
+. ..++ ...+.+.+.+.++-.+++.+++..
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 11 1221 257999999999999999987643
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.60 E-value=3.3e-07 Score=96.01 Aligned_cols=181 Identities=13% Similarity=0.024 Sum_probs=113.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCC-eeEEEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 258 (832)
.+++|++..++.+..++... ..+.+.++|.+|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 45999999999999888653 233489999999999999999987311 11111 233344433111
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHH--H-cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH-HHH-HhC
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEY--I-MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS-VAL-QLG 333 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~-~~~ 333 (832)
..........+... + .+++-++|+|+++.-.......+...+.....+.++|+||.... +.. ...
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 01111111111111 1 25678999999976554455566666655556778888887643 111 123
Q ss_pred CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 334 SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 334 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
....+.+.+++.++...++...+...+. .-..+....+++.++|.+..+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCC----CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3458999999999999999887653322 123456778899999998765443
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.56 E-value=3.4e-07 Score=87.87 Aligned_cols=151 Identities=16% Similarity=0.086 Sum_probs=83.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh---c--cCCeeEEEEeCCCccHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK---R--NFEKVIWVCVSDTFEGIRV 254 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~--~f~~~~wv~~~~~~~~~~~ 254 (832)
..++||+++++++.+.+... ..+.+.|+|.+|+|||++|+.+++..... . .....++++++. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 46999999999999998653 34567899999999999999998742110 0 112344443321 1
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHH--cCCceEEEEeCCCCCC-------ccc-chhhhhhhcCCCCCcEEEEEeC
Q 003300 255 AKAIIEGLGVSASGLSEFESLMKQIQEYI--MGKKFFLVLDDVWDGD-------YKK-WDPFFSCLKNGHHESKILITTR 324 (832)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~-~~~l~~~l~~~~~gs~iivTtr 324 (832)
. .. .............+.+.+ .+++.+||+||++... ... ...+...+. . .+..+|.||.
T Consensus 90 ~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~-~~~~~i~~~~ 159 (195)
T 1jbk_A 90 V-------AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-R-GELHCVGATT 159 (195)
T ss_dssp H-------TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-T-TSCCEEEEEC
T ss_pred h-------cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-c-CCeEEEEeCC
Confidence 0 00 000011111122222222 3567899999996532 112 222333332 2 2455777776
Q ss_pred CHHHHH-------HhCCcCeeeCCCCChHHHHHHH
Q 003300 325 DRSVAL-------QLGSIDIIPVKELGEGECCLLF 352 (832)
Q Consensus 325 ~~~~~~-------~~~~~~~~~l~~L~~~~~~~lf 352 (832)
...... .......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 654321 1122336888898888876543
No 161
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=2.5e-07 Score=97.39 Aligned_cols=261 Identities=9% Similarity=0.042 Sum_probs=135.0
Q ss_pred CCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccC--------CCcccEEeccCccCccccC-cccccccCC
Q 003300 462 SSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCE--------LYNLQKLDIRRCRNLKELP-AGIGKLKNM 532 (832)
Q Consensus 462 ~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~--------l~~L~~L~L~~~~~~~~lp-~~l~~l~~L 532 (832)
+++|||++|.+......-+.++.++++.+..+.|. +..|.+ +.+|+.|+|.+ . +..++ ..|..|++|
T Consensus 51 L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 51 LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNL 126 (329)
T ss_dssp CCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTC
T ss_pred CeEEecCcceeEEecCccccccccccccccccccC--HHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCccc
Confidence 46677777776622211222333455555555322 133556 88888888887 4 44454 457888888
Q ss_pred ceeecCCccCcccccCCCCCCCCCccCCceeeCC--ccCCCCccCccccccCCcCC-ceeecCCCCCCChhhhhhhcccC
Q 003300 533 RSLLNGETYSLKYMPVGISKLTSLRTLDKFVVGG--GIDGSNTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYN 609 (832)
Q Consensus 533 ~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~~~~~--~~~~~~~~~l~~l~~L~~L~-~l~i~~~~~~~~~~~~~~~~l~~ 609 (832)
+.|++..|......+..|..+.++..+....... .........+..+. .|+ .+.+... ..+.......-..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~---~L~~~i~~~~~---~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE---PLETTIQVGAM---GKLEDEIMKAGLQ 200 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC---CCEEEEEECTT---CCHHHHHHHTTCC
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc---ccceeEEecCC---CcHHHHHhhcccC
Confidence 8888888755554455577766666554111000 00000111122222 222 1222221 1222222222223
Q ss_pred CCCCCceEEEEecCCCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCCCCch-hccccCCcEEEEeccCCCCcC
Q 003300 610 QQNLLRLRLEFGRVVDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNIFPKW-LTSLTNLRNLYLRSCVKCEHL 688 (832)
Q Consensus 610 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~L~~~~~~~~l 688 (832)
..++..+.+..+-.. . ....+. ..+.+|+.|++.++....+|.. |..+++|+.|+|.+| +..+
T Consensus 201 ~~~~~~l~~~~~l~~----~-------~~~~l~---~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I 264 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN----A-------DFKLIR---DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTI 264 (329)
T ss_dssp GGGCSEEEEEECCCH----H-------HHHHHH---HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEE
T ss_pred ccccceEEEeeeecH----H-------HHHHHH---HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--ccee
Confidence 456666666654210 0 001111 1257899999998887777664 668999999999886 4433
Q ss_pred CC--CCCcc-cc-ceeccccccceeeCccccCCCCCCCCCCCCCCCCCCccCCcccceeecccccccccccccccccccc
Q 003300 689 PP--LGKLP-LE-KLELRNLKSVKRVGNEFLGTEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENI 764 (832)
Q Consensus 689 ~~--l~~lp-L~-~l~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 764 (832)
+. +..++ |+ .+.+.+ .+..... ..+.++++|+.|++.+. +++.+ ....+
T Consensus 265 ~~~aF~~~~~L~~~l~l~~---------~l~~I~~------------~aF~~c~~L~~l~l~~n-~i~~I-----~~~aF 317 (329)
T 3sb4_A 265 GQRVFSNCGRLAGTLELPA---------SVTAIEF------------GAFMGCDNLRYVLATGD-KITTL-----GDELF 317 (329)
T ss_dssp CTTTTTTCTTCCEEEEECT---------TCCEECT------------TTTTTCTTEEEEEECSS-CCCEE-----CTTTT
T ss_pred hHHHhhCChhccEEEEEcc---------cceEEch------------hhhhCCccCCEEEeCCC-ccCcc-----chhhh
Confidence 32 23333 44 444433 2221111 23678899999977442 33333 33567
Q ss_pred CCCCccceeee
Q 003300 765 SIMPRLSSLEV 775 (832)
Q Consensus 765 ~~l~~L~~L~l 775 (832)
..+++|+.|..
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 77888888753
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.51 E-value=5.3e-07 Score=90.11 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=102.5
Q ss_pred Cceecch---hhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 180 GEVCGRV---DEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 180 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
.+|+|++ ..++.+..+.... ..+.+.|+|.+|+||||+|+.+++. .......+.|++++.-...
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 4577633 4455565555432 3467889999999999999999973 3333345677776442110
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCccc--chhhhhhhcCC-CCC-cEEEEEeCCH------
Q 003300 257 AIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKK--WDPFFSCLKNG-HHE-SKILITTRDR------ 326 (832)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtr~~------ 326 (832)
+... + +.+ .++-+||+||++...... .+.+...+... ..+ .++|+||+..
T Consensus 95 -~~~~-----------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -STAL-----------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -CGGG-----------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -HHHH-----------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 0 011 346789999996643322 23343333221 112 2578877632
Q ss_pred ---HHHHHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 327 ---SVALQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 327 ---~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
.+...+.....+.+.+++.++..+++...+..... .-..+....+++.++|.+-.+..+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHH
Confidence 22222222267999999999999999987643221 223566788999999998766544
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.51 E-value=3.9e-06 Score=90.27 Aligned_cols=74 Identities=9% Similarity=0.162 Sum_probs=47.5
Q ss_pred ccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCC-CCCCC-CCcCeEEEcCChhhHHhhcc
Q 003300 734 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQT-TTLQDLTIWKCPILENRYRE 811 (832)
Q Consensus 734 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l-~~L~~L~l~~c~~L~~~~~~ 811 (832)
+.++++|+.+.|.+ +++.+ ....+..+ +|+.|.+.+|. +..++. .+..+ .+++.|++..+. .+.++
T Consensus 319 F~~c~~L~~l~lp~--~l~~I-----~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~- 386 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA--NVTQI-----NFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAES--VEKYK- 386 (401)
T ss_dssp TTTCCSCCEEEECT--TCCEE-----CTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGG--HHHHH-
T ss_pred hcCCCCccEEEECc--cccEE-----cHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHH--HHHhh-
Confidence 56778888887754 34333 23456777 99999998876 555554 34455 478999998754 23332
Q ss_pred CCCCCcccc
Q 003300 812 GKGEDWHKI 820 (832)
Q Consensus 812 ~~g~~~~~i 820 (832)
....|...
T Consensus 387 -~a~~W~~f 394 (401)
T 4fdw_A 387 -NANGWRDF 394 (401)
T ss_dssp -HSTTGGGG
T ss_pred -hccchhhh
Confidence 23557654
No 164
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.50 E-value=5.5e-07 Score=94.57 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=109.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+|+|++..++++..++..... .......+.|+|.+|+|||++|+.+++. ... ..++++.+......++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHHH---
Confidence 5699999999998888763210 0013356889999999999999999873 222 234454433222221111
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC------------------CCcEEEE
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH------------------HESKILI 321 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 321 (832)
.+... ..+..+|++|++..........+...+.... .+.++|.
T Consensus 83 ------------------~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 83 ------------------ILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ------------------HHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ------------------HHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 11110 1356688999996544333444443332210 2356777
Q ss_pred EeCCHH-HHHHh-CC-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHHh
Q 003300 322 TTRDRS-VALQL-GS-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNLL 393 (832)
Q Consensus 322 Ttr~~~-~~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 393 (832)
||.... +...+ .. ...+.+.+++.++...++.+.+..... .-..+....+++.+.|.|..+..+...+
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 776432 11111 11 257899999999999999887653322 2235667889999999998877665544
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=3.6e-06 Score=89.42 Aligned_cols=194 Identities=12% Similarity=0.045 Sum_probs=113.7
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCC-eeEEEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 258 (832)
.+++|+++.++.+..++.... ...+.++|.+|+||||+|+.+++.......+. .++.++.+.......+ ++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 469999999999999986542 22389999999999999999997421111121 2334444432222222 111
Q ss_pred HHHhCC-CCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH-HHHH-hCCc
Q 003300 259 IEGLGV-SASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS-VALQ-LGSI 335 (832)
Q Consensus 259 ~~~l~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~-~~~~ 335 (832)
+..... ........ .....-.+++-+|++|++..-.......+...+.......++|++|.... +... ....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 111110 00000000 00001123556999999966554445556666655555677888776442 1111 1113
Q ss_pred CeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 336 DIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 336 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
..+.+.+++.++....+...+..... .-..+....|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV----KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 47899999999999999887643221 123567789999999999864443
No 166
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.32 E-value=4.3e-06 Score=90.96 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=107.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccC--CeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
...+.|+|.+|+||||||+.+++. ....+ ..+++++.. .+...+...+... . ...+...++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~----~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----K----LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----C----HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----c----HHHHHHHhc
Confidence 567999999999999999999983 43333 235555443 2333444433221 1 122333444
Q ss_pred CCceEEEEeCCCCCCc--ccchhhhhhhcC-CCCCcEEEEEeCCH---------HHHHHhCCcCeeeCCCCChHHHHHHH
Q 003300 285 GKKFFLVLDDVWDGDY--KKWDPFFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELGEGECCLLF 352 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~~~~~~~~~~~~~l~~L~~~~~~~lf 352 (832)
.+.-+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+++++.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3677999999965432 122334443322 23467788888762 33333433467899999999999999
Q ss_pred HHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHHHH------hcCC-CCHHHHHHHHhh
Q 003300 353 KQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIGNL------LRSK-STVKEWQRILES 408 (832)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~------l~~~-~~~~~w~~~~~~ 408 (832)
.+.+..... ..+ .+....|++.+.|.+-.+.-+-.. ..++ -+.+.++.+++.
T Consensus 273 ~~~~~~~~~-~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHTC-CCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 887643222 111 244678889999988654332211 1122 256677776654
No 167
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.32 E-value=1e-05 Score=87.75 Aligned_cols=178 Identities=18% Similarity=0.170 Sum_probs=104.8
Q ss_pred CceecchhhH---HHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 180 GEVCGRVDEK---NELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 180 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
.+++|.+..+ ..+...+... ....+.++|.+|+||||+|+.+++. ....| ..++... ..... .+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~~-~~~~~-ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAVT-SGVKE-IR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETTT-CCHHH-HH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEecc-CCHHH-HH
Confidence 4689998887 6777777653 4467999999999999999999973 32222 1222211 11111 11
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHH-HHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEE-EeCCHH--H-HHH
Q 003300 257 AIIEGLGVSASGLSEFESLMKQIQ-EYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILI-TTRDRS--V-ALQ 331 (832)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--~-~~~ 331 (832)
. ...... ....+++.+|++|+++.-.....+.+...+..+ ...+|. ||.+.. + ...
T Consensus 93 ~-----------------~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 E-----------------AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp H-----------------HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred H-----------------HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 1 111111 112467889999999776555666666666542 233444 444432 1 122
Q ss_pred hCCcCeeeCCCCChHHHHHHHHHHhhccCCC---CCccchHHHHHHHHHHcCCChhHHHHH
Q 003300 332 LGSIDIIPVKELGEGECCLLFKQIAFLRRSF---EDREKLEPMGRKIAHKCKGLPLAAKVI 389 (832)
Q Consensus 332 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~Plai~~~ 389 (832)
......+.+.+++.++...++.+........ ....-..+....+++.++|.+-.+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2345688999999999999999876532111 112234567788888999987654433
No 168
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.27 E-value=2.9e-05 Score=78.44 Aligned_cols=188 Identities=13% Similarity=0.043 Sum_probs=100.5
Q ss_pred CceecchhhHHHHHHHHhc---cCCC---CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLC---ESGE---QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~---~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.+..++++.+++.. .... .....+.+.|+|.+|+|||++|+.+++. ... ..+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~---~~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQV---PFLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTC---CEEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEechHHHHh---
Confidence 4689998887777665432 1100 0123456889999999999999999973 322 234444433111
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCC------------Ccccc---hhhhhhhcC--CCCC
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDG------------DYKKW---DPFFSCLKN--GHHE 316 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~~~~---~~l~~~l~~--~~~g 316 (832)
.........+...+.......+.+|++|+++.- ..... ..+...+.. ...+
T Consensus 78 ------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 ------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000111122222233333456789999999653 11111 222222222 1234
Q ss_pred cEEEEEeCCHHHHH-H-hC--C-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh-HHHHHH
Q 003300 317 SKILITTRDRSVAL-Q-LG--S-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL-AAKVIG 390 (832)
Q Consensus 317 s~iivTtr~~~~~~-~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 390 (832)
..||.||....... . .. . ...+.+...+.++..+++...+..... ..........+++.+.|.+- .|..+.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 56677776543211 1 11 1 357889999999999999887653322 11222234778888888754 444443
No 169
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.27 E-value=1.6e-05 Score=85.00 Aligned_cols=217 Identities=15% Similarity=0.099 Sum_probs=114.6
Q ss_pred CceecchhhHHHH---HHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe----CCCccHH
Q 003300 180 GEVCGRVDEKNEL---LSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV----SDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~~ 252 (832)
.+|+|++..++.+ ...+.... ...+.+.|+|.+|+|||++|+.+++. ..... ..+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccchh
Confidence 4699999887764 44444332 12368899999999999999999973 32211 1222221 1222333
Q ss_pred HHHHHHHHHh-CC--------------------CC-------CC--CCcHHHHHHHHHHHH-----cCC----ceEEEEe
Q 003300 253 RVAKAIIEGL-GV--------------------SA-------SG--LSEFESLMKQIQEYI-----MGK----KFFLVLD 293 (832)
Q Consensus 253 ~~~~~i~~~l-~~--------------------~~-------~~--~~~~~~~~~~l~~~l-----~~k----~~LlVlD 293 (832)
..+...+... +. .. .. ......+...+.... .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 3343333321 10 00 00 000122222222211 133 3599999
Q ss_pred CCCCCCcccchhhhhhhcCCCCCcEEEEEeCC-------------HHH-HHHhCCcCeeeCCCCChHHHHHHHHHHhhcc
Q 003300 294 DVWDGDYKKWDPFFSCLKNGHHESKILITTRD-------------RSV-ALQLGSIDIIPVKELGEGECCLLFKQIAFLR 359 (832)
Q Consensus 294 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-------------~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 359 (832)
+++.-..+....+...+...... .++++|.. ..+ .........+.+.+++.++...++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99765545555555555443333 34444431 001 1112333458999999999999999876543
Q ss_pred CCCCCccchHHHHHHHHHHcC-CChhHHHHHH-HHh-----cCC--CCHHHHHHHHhh
Q 003300 360 RSFEDREKLEPMGRKIAHKCK-GLPLAAKVIG-NLL-----RSK--STVKEWQRILES 408 (832)
Q Consensus 360 ~~~~~~~~~~~~~~~i~~~~~-g~Plai~~~~-~~l-----~~~--~~~~~w~~~~~~ 408 (832)
.. .-..+....+++.+. |.|-.+..+. .+. ... -+.++.+.+++.
T Consensus 276 ~~----~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 276 DV----EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TC----CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CC----CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 22 223556778888887 7776544332 211 122 145666666553
No 170
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=4.5e-06 Score=88.74 Aligned_cols=193 Identities=10% Similarity=0.029 Sum_probs=107.4
Q ss_pred CceecchhhHHHHHHHH-hccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCe-------------------
Q 003300 180 GEVCGRVDEKNELLSKL-LCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK------------------- 239 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~------------------- 239 (832)
.+++|.+..++.+..++ ... ....+.|+|..|+||||+|+.++.. ....-..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~------~~~~~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~~~~~~~~~~~ 85 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR------DLPHLLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQFVTASNRKLEL 85 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT------CCCCEEEECSTTSSHHHHHHTHHHH--HSCTTCCC------------------
T ss_pred HHhcCCHHHHHHHHHHHhhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceeeccccccccee
Confidence 46899999988888877 332 2222899999999999999988762 1000000
Q ss_pred -------eEEEEeCCCc-cHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhc
Q 003300 240 -------VIWVCVSDTF-EGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLK 311 (832)
Q Consensus 240 -------~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 311 (832)
.+.+..+... ......++++..+.....-... . .+. -+.+++-++|+|++..-+......+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 86 NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ----D-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eeecccceEEecHhhcCCcchHHHHHHHHHHHHhcccccc----c-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 1111111100 0000122222222111000000 0 000 023466799999997655555555666665
Q ss_pred CCCCCcEEEEEeCCHH-HHH-HhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccch-HHHHHHHHHHcCCChhHHHH
Q 003300 312 NGHHESKILITTRDRS-VAL-QLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKL-EPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 312 ~~~~gs~iivTtr~~~-~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plai~~ 388 (832)
....+..+|++|.+.. +.. .......+.+.+++.++....+.+.+...+. .-. .+....|++.++|.+-.+..
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI----QLETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----EECCSHHHHHHHHHHTTCHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHHcCCCHHHHHH
Confidence 5455678888887532 211 1233468999999999999999887643322 111 34567889999998865544
Q ss_pred HH
Q 003300 389 IG 390 (832)
Q Consensus 389 ~~ 390 (832)
+.
T Consensus 236 ~l 237 (354)
T 1sxj_E 236 ML 237 (354)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.25 E-value=1.2e-05 Score=82.55 Aligned_cols=204 Identities=18% Similarity=0.124 Sum_probs=110.3
Q ss_pred CCceecchhhHHHHHHHHhccCCC-------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESGE-------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEG 251 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 251 (832)
-.+++|.+..++++.+.+...... .....+.+.|+|.+|+|||++|+.+++. .... .+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH-
Confidence 356999999999998877542000 0013456899999999999999999973 2222 23333221110
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHH-HHHHHHcCCceEEEEeCCCCC-----------Ccccchhhhhh---hc--CCC
Q 003300 252 IRVAKAIIEGLGVSASGLSEFESLMK-QIQEYIMGKKFFLVLDDVWDG-----------DYKKWDPFFSC---LK--NGH 314 (832)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~---l~--~~~ 314 (832)
. .......... .+......++.+|++|+++.. +......+... +. ...
T Consensus 90 -------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 -------------K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0 1111122222 222333456789999999442 10111122222 22 123
Q ss_pred CCcEEEEEeCCHHHHH-H-hC--C-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCC-ChhHHHH
Q 003300 315 HESKILITTRDRSVAL-Q-LG--S-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKG-LPLAAKV 388 (832)
Q Consensus 315 ~gs~iivTtr~~~~~~-~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~ 388 (832)
.+..||.||....... . .. . ...+.+.+.+.++..+++......... ..... ...++..+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 4566777887542211 1 11 1 347899999999999999887643321 11122 3567777877 4544443
Q ss_pred HHH-----H-hcCC--CCHHHHHHHHhh
Q 003300 389 IGN-----L-LRSK--STVKEWQRILES 408 (832)
Q Consensus 389 ~~~-----~-l~~~--~~~~~w~~~~~~ 408 (832)
+.. . .+.. -+.++...+++.
T Consensus 230 l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 230 ICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 322 1 1222 246666666654
No 172
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.24 E-value=2.6e-05 Score=81.75 Aligned_cols=169 Identities=11% Similarity=0.057 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhc--------------------cCCeeEEEEe
Q 003300 186 VDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKR--------------------NFEKVIWVCV 245 (832)
Q Consensus 186 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~ 245 (832)
++..+.+...+.... -...+.++|..|+|||++|+.+++...-.. +++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 445666666665432 345788999999999999999887311100 111 223322
Q ss_pred CCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEE
Q 003300 246 SDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKIL 320 (832)
Q Consensus 246 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 320 (832)
.. .......+++.+ +.+.+ .+++-++|+|+++.-+......+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222222 22222 2567789999997655555566777776655677778
Q ss_pred EEeCCHH-HHH-HhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHH
Q 003300 321 ITTRDRS-VAL-QLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 321 vTtr~~~-~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 388 (832)
++|.+.. +.. .......+.+.+++.++...++.+.. .-..+.+..+++.++|.|..+..
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 7777653 222 22445689999999999999888764 11245567899999999976544
No 173
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.24 E-value=1.1e-05 Score=86.64 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=32.0
Q ss_pred ceeEEEeCCcCccccc-ccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCcccccCCCCCCCCCccCC
Q 003300 484 HLRYLNLSELGIERLP-KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLD 560 (832)
Q Consensus 484 ~L~~L~Ls~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~ 560 (832)
+|+.+.+.+ .++.++ ..|.+|.+|+.+++.+|. +..+|.....+.+|+.+.+..+ ....-...|.++++|+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 355555543 344332 334555555555555433 3334333222445555555433 2222222344555555444
No 174
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.23 E-value=1.4e-05 Score=84.25 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=107.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|++..++++..++..... .......+.|+|.+|+|||++|+.+++ ..... .+.++.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~~~-------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISY--EMSAN---IKTTAAPMIEKS-------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC---EEEEEGGGCCSH--------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEecchhccch--------
Confidence 4699999999999988875311 012345689999999999999999986 22222 233333221111
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC------------------CCcEEEE
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH------------------HESKILI 321 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 321 (832)
......+.. ..+..+|++|+++.........+...+.... ++..+|.
T Consensus 95 -------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 95 -------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp -------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred -------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 111111111 2356788999996654444444544443321 1245666
Q ss_pred EeCCHHH-HHH-hCC-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHHHHH
Q 003300 322 TTRDRSV-ALQ-LGS-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKVIG 390 (832)
Q Consensus 322 Ttr~~~~-~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 390 (832)
+|..... ... ... ...+.+.+++.++...++.+.+..... .-..+....+++.+.|.|-.+..+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 6665321 111 122 357999999999999999887643321 2235667788899999996554433
No 175
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.19 E-value=3.2e-05 Score=80.89 Aligned_cols=177 Identities=17% Similarity=0.110 Sum_probs=98.1
Q ss_pred cee-cchh--hHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 181 EVC-GRVD--EKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 181 ~~v-Gr~~--~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
+|+ |... ....+..+...+. .....+.|+|.+|+||||||+.+++. ....-..++++++. .+...
T Consensus 12 ~fv~g~~~~~a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~ 79 (324)
T 1l8q_A 12 NFIVGEGNRLAYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQA 79 (324)
T ss_dssp SCCCCTTTHHHHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHH
Confidence 455 5332 3344555554332 13457899999999999999999974 22111235555533 22333
Q ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc--ccchhhhhhhcC-CCCCcEEEEEeCCH--------
Q 003300 258 IIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY--KKWDPFFSCLKN-GHHESKILITTRDR-------- 326 (832)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~-------- 326 (832)
+...+... ..+ .+..... +.-+|++||+..... ...+.+...+.. ...+..||+||...
T Consensus 80 ~~~~~~~~-----~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKG-----TIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHT-----CHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcC-----cHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 33332110 111 1222222 367999999965332 112233333322 12355788887632
Q ss_pred -HHHHHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhH
Q 003300 327 -SVALQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 327 -~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
.+...+.....+.+.+ +.++...++...+..... .-..+....|++.+ |..-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~----~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL----ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHhC-CCHHH
Confidence 2333333335789999 999999999987753322 12245677888888 76643
No 176
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.19 E-value=1.9e-06 Score=91.37 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=69.6
Q ss_pred eEEEeCCc-CcccccccccCCCcccEEeccC-ccCccccC-cccccccCCceeecCCccCcccccCCCCCCCCCccCCce
Q 003300 486 RYLNLSEL-GIERLPKTLCELYNLQKLDIRR-CRNLKELP-AGIGKLKNMRSLLNGETYSLKYMPVGISKLTSLRTLDKF 562 (832)
Q Consensus 486 ~~L~Ls~~-~i~~lp~~~~~l~~L~~L~L~~-~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~l~~L~~L~~L~~~ 562 (832)
..++++++ .++.+|. +..+.+|++|+|++ |. +..+| ..|..|++|++|+|++|.+....|..|.+|++|+.|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~-- 86 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN-- 86 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE--
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe--
Confidence 35688988 8999999 99999999999997 66 55555 6799999999999999976666666789999999999
Q ss_pred eeCCccCCCCc
Q 003300 563 VVGGGIDGSNT 573 (832)
Q Consensus 563 ~~~~~~~~~~~ 573 (832)
+.+|.+.....
T Consensus 87 l~~N~l~~~~~ 97 (347)
T 2ifg_A 87 LSFNALESLSW 97 (347)
T ss_dssp CCSSCCSCCCS
T ss_pred CCCCccceeCH
Confidence 77887655333
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=4.1e-06 Score=93.44 Aligned_cols=197 Identities=15% Similarity=0.136 Sum_probs=110.1
Q ss_pred CceecchhhHHHHHHHHhccCC-----------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC
Q 003300 180 GEVCGRVDEKNELLSKLLCESG-----------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 248 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 248 (832)
.+++|++..++++..++..... ...+..+.+.|+|++|+|||++|+.+++. . .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 4699999999999999975210 00113468999999999999999999973 2 12 2445555544
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCccc---chhhhhhhcCCCCCcEEEEEeCC
Q 003300 249 FEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKK---WDPFFSCLKNGHHESKILITTRD 325 (832)
Q Consensus 249 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~iivTtr~ 325 (832)
.... .....+........-..-...... .....+++.+||+|+++.-.... +..+...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 4433 222222221111000000000000 00113567899999996543222 23444444332 3346666554
Q ss_pred HH---HHHHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC-hhHHHHHH
Q 003300 326 RS---VALQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL-PLAAKVIG 390 (832)
Q Consensus 326 ~~---~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 390 (832)
.. +.........+.+.+++.++..+++...+...... .. .+....|++.++|. +-++..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 32 22112234579999999999999988876543321 11 23467889999995 44555543
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.16 E-value=4.1e-05 Score=77.76 Aligned_cols=196 Identities=17% Similarity=0.170 Sum_probs=102.7
Q ss_pred CceecchhhHHHHHH-------HHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLS-------KLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
..++|....++++.. .+.... ....+.+.|+|.+|+|||++|+.+++. .. +. .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHH----
Confidence 357788777666655 332211 235678999999999999999999973 22 22 222332221
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCC------Ccc----cchhhhhhhcC---CCCCcEE
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDG------DYK----KWDPFFSCLKN---GHHESKI 319 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~----~~~~l~~~l~~---~~~gs~i 319 (832)
+... ........+...+......+..+|++|+++.- ... ....+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 00000112222333334467889999998431 111 11223232222 2233456
Q ss_pred EEEeCCHHHHHHh---CC-cCeeeCCCCCh-HHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCC------ChhHHHH
Q 003300 320 LITTRDRSVALQL---GS-IDIIPVKELGE-GECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKG------LPLAAKV 388 (832)
Q Consensus 320 ivTtr~~~~~~~~---~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g------~Plai~~ 388 (832)
|.||......... +. ...+.+.+++. ++...++.+.. . -..+....+++.+.| ..-++..
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-----~~~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-----FKDKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-----SCHHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-----CCHHHHHHHHHHhcCCCccccHHHHHHH
Confidence 7788777554431 22 45789999988 66666665531 1 124556788888888 3444444
Q ss_pred HHHHhcCCCCHHHHHHHHh
Q 003300 389 IGNLLRSKSTVKEWQRILE 407 (832)
Q Consensus 389 ~~~~l~~~~~~~~w~~~~~ 407 (832)
+-.+.. ......|..++.
T Consensus 242 l~~a~~-~~~~~~~~~~~~ 259 (272)
T 1d2n_A 242 IEMSLQ-MDPEYRVRKFLA 259 (272)
T ss_dssp HHHHTT-SCGGGHHHHHHH
T ss_pred HHHHhh-hchHHHHHHHHH
Confidence 443332 223345555443
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.16 E-value=1.1e-05 Score=84.55 Aligned_cols=169 Identities=14% Similarity=0.052 Sum_probs=102.6
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|.+..++.+..++.... ...++.+.|.+|+|||++|+.+++. .. ..++.++.+... ..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~~-~~------- 87 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDCK-ID------- 87 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTCC-HH-------
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccccC-HH-------
Confidence 569999999999999997532 3457788899999999999999873 22 234455543321 11
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHH-----cCCceEEEEeCCCCCC-cccchhhhhhhcCCCCCcEEEEEeCCHH-----H
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYI-----MGKKFFLVLDDVWDGD-YKKWDPFFSCLKNGHHESKILITTRDRS-----V 328 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~-----~ 328 (832)
.+.+.+..+. .+++-+|++||++.-. .+..+.+...+.....+.++|+||.... +
T Consensus 88 --------------~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 88 --------------FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp --------------HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTH
T ss_pred --------------HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHH
Confidence 1111222221 2367899999996544 3344455555544345677888887643 1
Q ss_pred HHHhCCcCeeeCCCCChHHHHHH-------HHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 329 ALQLGSIDIIPVKELGEGECCLL-------FKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 329 ~~~~~~~~~~~l~~L~~~~~~~l-------f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
... ...+.+++++.++-.++ +...+..... ... ..+....+++.++|.+-.+
T Consensus 154 ~sR---~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~--~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 154 QSR---CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIA--DMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHH---SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBS--CHHHHHHHHHHTCSCTTHH
T ss_pred Hhh---CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCC--cHHHHHHHHHhCCCCHHHH
Confidence 122 34799999998874333 2222222111 111 1266778889898876543
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.14 E-value=2e-05 Score=81.88 Aligned_cols=162 Identities=12% Similarity=0.019 Sum_probs=90.3
Q ss_pred ceecchhhHHHHHHHHhccC---------CCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccH
Q 003300 181 EVCGRVDEKNELLSKLLCES---------GEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEG 251 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 251 (832)
+++|.+..++.+.+++.... -........+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888887776654210 000124557899999999999999988874222211111122322210
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCC---------CcccchhhhhhhcCCCCCcEEEEE
Q 003300 252 IRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDG---------DYKKWDPFFSCLKNGHHESKILIT 322 (832)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivT 322 (832)
.+.... ...........+... +.-+|++|+++.- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 111100 011112222222222 3459999999632 223334555555555556778888
Q ss_pred eCCHHHHHH--hC------CcCeeeCCCCChHHHHHHHHHHhhc
Q 003300 323 TRDRSVALQ--LG------SIDIIPVKELGEGECCLLFKQIAFL 358 (832)
Q Consensus 323 tr~~~~~~~--~~------~~~~~~l~~L~~~~~~~lf~~~~~~ 358 (832)
|........ .. ....+.+.+++.++-..++...+..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 865432111 11 1267899999999999999887654
No 181
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.09 E-value=4.3e-06 Score=79.53 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=38.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
..++||+.+++++.+.+... ..+.+.|+|.+|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999998653 3456789999999999999999873
No 182
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.09 E-value=3.7e-06 Score=76.17 Aligned_cols=115 Identities=16% Similarity=0.045 Sum_probs=69.7
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIE 260 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 260 (832)
+++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++.... .... .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 578999999999988765332 2234789999999999999999974211 1122 23 655432221
Q ss_pred HhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH
Q 003300 261 GLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR 326 (832)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 326 (832)
.... ..+.. .+.-.|++|+++.-.......+...+.......+||.||...
T Consensus 66 ---------~~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ---------PQLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ---------SCHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ---------hhhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 1111 11111 133578999997765555556666665545566788887653
No 183
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.01 E-value=5.2e-05 Score=81.72 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=41.2
Q ss_pred ccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCC-CCCCCCCcCeEEEcCC
Q 003300 734 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLTIWKC 802 (832)
Q Consensus 734 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 802 (832)
+..+.+|+.+.|.+ +++.+ +...+..+++|+.+.+..+ ++.++. .+.+|++|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~--~v~~I-----~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPY--LVEEI-----GKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEE-----CTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCC--cccEE-----hHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 45677888886643 23332 2345677889999998653 666665 4677899999998754
No 184
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.00 E-value=2e-07 Score=99.27 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=46.3
Q ss_pred CcEEecCCCccc-----cccccC-CCCceeEEEeCCcCccc--ccccccCCCcccEEeccCccCccccCccc-----ccc
Q 003300 463 SPFRLHSNLIRE-----IPKNVG-KLIHLRYLNLSELGIER--LPKTLCELYNLQKLDIRRCRNLKELPAGI-----GKL 529 (832)
Q Consensus 463 r~L~L~~n~l~~-----lp~~l~-~l~~L~~L~Ls~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~l-----~~l 529 (832)
+.|+|++|.++. +...+. ...+|++|+|++|.++. +......+.+|++|+|++|.....-...+ ...
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 556667777654 222333 33688888888888762 22223345678888888876432222222 235
Q ss_pred cCCceeecCCcc
Q 003300 530 KNMRSLLNGETY 541 (832)
Q Consensus 530 ~~L~~L~l~~~~ 541 (832)
++|++|++++|.
T Consensus 155 ~~L~~L~Ls~n~ 166 (372)
T 3un9_A 155 CQITTLRLSNNP 166 (372)
T ss_dssp CCCCEEECCSSC
T ss_pred CccceeeCCCCC
Confidence 667777777774
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.00 E-value=0.00024 Score=73.97 Aligned_cols=184 Identities=16% Similarity=0.052 Sum_probs=104.4
Q ss_pred CceecchhhHHHHHHHHhccC------CCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCES------GEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.+..++++.+.+.... .......+.+.++|.+|+|||+||+++++. .... .+.++.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------H
Confidence 468999999999988773110 001123467899999999999999999973 3222 2333321 1
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCCcc-----------cchhhhhhhc---CCCCCcE
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGDYK-----------KWDPFFSCLK---NGHHESK 318 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~ 318 (832)
+. .. .....+.....+... -..++.+|++|+++.-... ....+...+. ....+..
T Consensus 87 l~----~~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 LV----SK------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp HH----TT------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred Hh----hc------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 11 00 011122223333322 2356789999999542110 0222333332 2334556
Q ss_pred EEEEeCCHHH-----HHHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC-hhHHHHHH
Q 003300 319 ILITTRDRSV-----ALQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL-PLAAKVIG 390 (832)
Q Consensus 319 iivTtr~~~~-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 390 (832)
||.||..... .. .-...+.+...+.++-.+++...+..... .........+++.+.|+ +-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6667765322 22 12356788889999999999987743221 11244567888888884 54555444
No 186
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.99 E-value=2.7e-07 Score=98.35 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=81.5
Q ss_pred cccccEEEecCccccc--------------cCCCcEEecCCCcccc--ccccCCCCceeEEEeCCcCcccc-----cccc
Q 003300 444 LACLRALVIRQSLVIR--------------LSSSPFRLHSNLIREI--PKNVGKLIHLRYLNLSELGIERL-----PKTL 502 (832)
Q Consensus 444 ~~~Lr~L~~~~~~~~~--------------~~~r~L~L~~n~l~~l--p~~l~~l~~L~~L~Ls~~~i~~l-----p~~~ 502 (832)
+++|+.|.+.++.+.. ..+++|+|++|.++.. ..-...+.+|++|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999998876321 1247899999998642 22223466899999999998732 2223
Q ss_pred -cCCCcccEEeccCccCcc----ccCcccccccCCceeecCCccCccc----ccCCCCCCCCCccCCceeeCCc
Q 003300 503 -CELYNLQKLDIRRCRNLK----ELPAGIGKLKNMRSLLNGETYSLKY----MPVGISKLTSLRTLDKFVVGGG 567 (832)
Q Consensus 503 -~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~l~~L~~L~~L~~~~~~~~ 567 (832)
...++|++|+|++|.... .++..+..+++|++|++++|.+... ++..+...++|++|+ +.+|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~--Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN--VAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE--CCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE--CCCCC
Confidence 356889999999997432 3455567889999999999964321 233445556677666 44444
No 187
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.98 E-value=0.0002 Score=75.43 Aligned_cols=185 Identities=14% Similarity=0.006 Sum_probs=102.4
Q ss_pred CceecchhhHHHHHHHHhcc----C--CCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCE----S--GEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.+..++.+.+.+... . .......+-|.++|.+|+|||+||+++++. .... .+.++.+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------H
Confidence 46899999999998877321 0 000123356889999999999999999973 3222 2233222 1
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcc-----------cchhhhhhhcC---CCCCcEE
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYK-----------KWDPFFSCLKN---GHHESKI 319 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~i 319 (832)
+. ... . ......+...+...-..++.+|++|+++..... ....+...+.. ...+..|
T Consensus 120 l~----~~~----~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV----SKW----M-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh----hhh----c-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 110 0 111122222222223457889999999643211 01223332221 2345556
Q ss_pred EEEeCCHH-----HHHHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC-hhHHHHHH
Q 003300 320 LITTRDRS-----VALQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL-PLAAKVIG 390 (832)
Q Consensus 320 ivTtr~~~-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 390 (832)
|.||.... +.. .....+.+...+.++-.+++......... .-.......|++.+.|+ +-.|..+.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~----~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS----VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66776542 222 23457889999999999999887643211 11244567889999984 54455544
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=5.1e-05 Score=79.84 Aligned_cols=175 Identities=11% Similarity=0.073 Sum_probs=105.6
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCC-eeEEEEeCCCccHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEGIRVAKAI 258 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 258 (832)
.+++|.+..++.+...+... ....+.++|..|+||||+|+.++.... ...+. .+..++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 35789888888888888653 233389999999999999999987311 11111 122222222111
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHHHH------cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH-HHH-
Q 003300 259 IEGLGVSASGLSEFESLMKQIQEYI------MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS-VAL- 330 (832)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~- 330 (832)
.+.+.+.+.... .+.+-++|+|+++.-.....+.+...+.......++|++|.... +..
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 122222222222 13467899999966544445556655555455667777776542 111
Q ss_pred HhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHH
Q 003300 331 QLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAA 386 (832)
Q Consensus 331 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 386 (832)
.......+.+.+++.++....+.+.+..... .-..+..+.+++.++|.+--+
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~----~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKL----KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTC----CBCHHHHHHHHHHHTTCHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 1233457899999999998888876632221 122456778899999987643
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.95 E-value=0.00013 Score=77.18 Aligned_cols=187 Identities=10% Similarity=0.013 Sum_probs=104.6
Q ss_pred CceecchhhHHHHHHHHhcc----CC--CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCE----SG--EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.+..++++.+.+... .. ......+.+.|+|.+|+|||++|+.+++. ... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc---
Confidence 46899999999998877531 00 00123567899999999999999999873 222 234444432111
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCCCc-----------ccchhhhhhhcC----CCCCc
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDGDY-----------KKWDPFFSCLKN----GHHES 317 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~----~~~gs 317 (832)
. ...........+.. .-..++.+|++|+++.-.. .....+...+.. ...+.
T Consensus 156 -----------~--~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------K--WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------S--STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------c--ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 01111222222222 2235678999999843110 012233333322 12344
Q ss_pred EEEEEeCCHH-HHHH-h-CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCC-ChhHHHHHHH
Q 003300 318 KILITTRDRS-VALQ-L-GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKG-LPLAAKVIGN 391 (832)
Q Consensus 318 ~iivTtr~~~-~~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 391 (832)
.||.||.... +... . .....+.+...+.++..+++...+..... .-..+....|++.+.| .+-.|..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC----CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC----CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666776432 1111 1 12346788999999999998877643221 1124567789999998 4556665543
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.91 E-value=0.00099 Score=69.08 Aligned_cols=187 Identities=15% Similarity=0.057 Sum_probs=102.9
Q ss_pred CceecchhhHHHHHHHHhcc---CC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCE---SG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.++.++.+.+.+..+ .. +.....+.+.++|++|+|||+||+++++. ... ...+.++.+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~--~~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANN--STFFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTS--CEEEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCC--CcEEEEEhHHHHh---
Confidence 46889998888887766321 00 00123467889999999999999999973 211 1223333332110
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc-------cc----chhhhhhhcC---CCCCcEE
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY-------KK----WDPFFSCLKN---GHHESKI 319 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~----~~~l~~~l~~---~~~gs~i 319 (832)
.. .......+...+...-..++.+|++|+++.... .. ...+...+.. ...+..|
T Consensus 85 -----------~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 -----------KW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp -----------SS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred -----------hh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 00 011122222222222346788999999954210 00 1122222222 2334556
Q ss_pred EEEeCCHH-----HHHHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC-hhHHHHHHH
Q 003300 320 LITTRDRS-----VALQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL-PLAAKVIGN 391 (832)
Q Consensus 320 ivTtr~~~-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 391 (832)
|.||.... +.. .....+.+...+.++...++......... .-.......|++.+.|+ +-.|..+..
T Consensus 153 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN----SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCB----CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66665432 222 22357888999999999999887632211 11245667899999987 544555543
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.90 E-value=0.00063 Score=69.94 Aligned_cols=184 Identities=15% Similarity=0.084 Sum_probs=101.7
Q ss_pred CceecchhhHHHHHHHHhccCC------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.+..++.+.+.+..... ......+.+.|+|.+|+|||++|+.+++. ... ..+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~---~~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSA---TFLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTC---EEEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEeeHHHHhh---
Confidence 4699999999999887743110 00113457899999999999999999973 222 223344332110
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHH-HHHHcCCceEEEEeCCCCCCcc-----------cchhhhhhhc---CC--CCC
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQI-QEYIMGKKFFLVLDDVWDGDYK-----------KWDPFFSCLK---NG--HHE 316 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~--~~g 316 (832)
. ...+.......+ ......++.+|++|++..-... ....+...+. .. +.+
T Consensus 93 -----------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 0 011122222222 2233456789999999542110 0011222221 11 133
Q ss_pred cEEEEEeCCHH-----HHHHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh-HHHHHH
Q 003300 317 SKILITTRDRS-----VALQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL-AAKVIG 390 (832)
Q Consensus 317 s~iivTtr~~~-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 390 (832)
..||.||.... +... ....+.+...+.++...++...+..... .-..+....+++.+.|++- ++..+.
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55666776532 2222 2346778888888888888876643221 1124566788999999875 554443
No 192
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.89 E-value=3.1e-05 Score=74.71 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=66.3
Q ss_pred ceecch----hhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 181 EVCGRV----DEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 181 ~~vGr~----~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
+|++.. ..++.+.+++..... ....+.+.|+|.+|+|||+||+.+++. .......++|+++. .+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFR 95 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHH
Confidence 455543 344555666654321 112267899999999999999999983 33334456676543 3444
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchh--hhh-hhcCC-CCCcEEEEEeCCH
Q 003300 257 AIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDP--FFS-CLKNG-HHESKILITTRDR 326 (832)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~~ 326 (832)
.+....... ........+ .. .-+||+||++......|.. +.. .+... ..+.++|+||...
T Consensus 96 ~~~~~~~~~-----~~~~~~~~~----~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 96 ELKHSLQDQ-----TMNEKLDYI----KK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHC---C-----CCHHHHHHH----HH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhccc-----hHHHHHHHh----cC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 443332211 112222222 22 2389999996644344432 222 22211 2455788888753
No 193
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.88 E-value=2.2e-05 Score=74.07 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCC
Q 003300 186 VDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVS 265 (832)
Q Consensus 186 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 265 (832)
++.++.+.+++..-.. .....+.|+|..|+||||||+.+++.......+ .+++++ ..++...+.......
T Consensus 20 ~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCc
Confidence 3444555555543221 234689999999999999999999842212222 234443 334444443333221
Q ss_pred CCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccch--hhhhhhcC-CCCCcEEEEEeCC
Q 003300 266 ASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWD--PFFSCLKN-GHHESKILITTRD 325 (832)
Q Consensus 266 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~ 325 (832)
... ...+ .+. +.-+||+||++....+.|. .+...+.. ...|..||+||..
T Consensus 90 ~~~-----~~~~----~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 90 KDT-----KFLK----TVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CCS-----HHHH----HHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hHH-----HHHH----Hhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 1111 122 4568999999743333343 23333322 1246778998874
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.88 E-value=1.8e-06 Score=91.02 Aligned_cols=170 Identities=16% Similarity=0.087 Sum_probs=80.9
Q ss_pred ccccCCCCceeEEEeCCcCcc----------cccccccCCCcccEEeccCccCccccCcccccccCCceeecCCccCccc
Q 003300 476 PKNVGKLIHLRYLNLSELGIE----------RLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETYSLKY 545 (832)
Q Consensus 476 p~~l~~l~~L~~L~Ls~~~i~----------~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 545 (832)
.+++..+++|+.|.+...... .++..+..+++|+.|+|++|... .+|. + .+++|++|++..|.....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence 344555667777776543221 23344456677777777765322 2333 3 266777777765532211
Q ss_pred ccCCC--CCCCCCccCCceeeCCccCCCCccCccccccCCcCCceeecCCCCCCChhhhhhhcccCCCCCCceEEEEecC
Q 003300 546 MPVGI--SKLTSLRTLDKFVVGGGIDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLEFGRV 623 (832)
Q Consensus 546 ~p~~l--~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 623 (832)
....+ ..+++|+.|++....+...+ ...+..+..+ .....+++|+.|.+.+|.+
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~--~~~~~~l~~~----------------------l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGF--DGDMNVFRPL----------------------FSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTC--CSCGGGTGGG----------------------SCTTTCTTCCEEEEESCTT
T ss_pred HHHHHHHccCCCCcEEEEecccccccc--chhHHHHHHH----------------------HhcCCCCCcCEEeCCCCCC
Confidence 11111 24566666663222111100 0001111000 0012356777777776654
Q ss_pred CCCchHHHhhhhhchHHHhhcCCCCCCccEEEEEeeCCCC-----CCchhccccCCcEEEEeccC
Q 003300 624 VDGEDEARRRKKEKDEQLLKTLQPPLSVEKLGIILYGGNI-----FPKWLTSLTNLRNLYLRSCV 683 (832)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~l~~l~~L~~L~L~~~~ 683 (832)
... ....+.....+++|+.|+++.|.... ++..+..+++|+.|+|++|.
T Consensus 265 ~~~-----------~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 265 QNV-----------VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHH-----------HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred chH-----------HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 210 01111112335677777776655432 23334467788888888774
No 195
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.83 E-value=4.5e-05 Score=90.57 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=82.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc-------CCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN-------FEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------f~~~~wv~~~~~~~~~ 252 (832)
..++||++++++++..|... ....+.++|.+|+|||++|+.+++. .... -..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l~~-- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSLLA-- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC-------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHhhc--
Confidence 45899999999999999653 2345789999999999999999973 2110 11344444322110
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc--CCceEEEEeCCCCCC--------cccchhhhhhhcCCCCCcEEEEE
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIM--GKKFFLVLDDVWDGD--------YKKWDPFFSCLKNGHHESKILIT 322 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivT 322 (832)
+ .....+.+.....+...+. +++.+|++|+++.-. .+....+...+.. .+..+|.+
T Consensus 240 ----------g--~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~a 305 (854)
T 1qvr_A 240 ----------G--AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEE
T ss_pred ----------c--CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEe
Confidence 0 0011122222333333332 367899999995532 1111223333322 23446666
Q ss_pred eCCHHHHH-----Hh-CCcCeeeCCCCChHHHHHHHHHH
Q 003300 323 TRDRSVAL-----QL-GSIDIIPVKELGEGECCLLFKQI 355 (832)
Q Consensus 323 tr~~~~~~-----~~-~~~~~~~l~~L~~~~~~~lf~~~ 355 (832)
|....... .+ .....+.+.+++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 65443311 11 12346899999999999888754
No 196
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.82 E-value=9e-05 Score=81.33 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=80.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC------C-eeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF------E-KVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~-~~~wv~~~~~~~~~ 252 (832)
..++||+.++++++..|.... ..-+.++|.+|+|||++|+.++.. +...+ . .++.++++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~----- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT----- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCCc-----
Confidence 359999999999999997532 234679999999999999999873 32111 1 122222220
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHHH-
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVALQ- 331 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~- 331 (832)
...+ ........ .+...-..++.+|++|.- .+....+...+.. ...++|.+|........
T Consensus 247 --------~~~g--~~e~~~~~---~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 --------KYRG--EFEDRLKK---VMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred --------cccc--hHHHHHHH---HHHHHHhcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 0000 00111222 222223356788899921 1222223333322 23566666665442111
Q ss_pred ------hCCcCeeeCCCCChHHHHHHHHHHhh
Q 003300 332 ------LGSIDIIPVKELGEGECCLLFKQIAF 357 (832)
Q Consensus 332 ------~~~~~~~~l~~L~~~~~~~lf~~~~~ 357 (832)
......+.+.+.+.++...++.....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 11234799999999999999987653
No 197
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.80 E-value=2.2e-05 Score=70.75 Aligned_cols=111 Identities=10% Similarity=0.016 Sum_probs=63.4
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|++..++++.+.+..... ...-|.|+|..|+|||++|+.+++... ..+.++++. -.....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~--~~~~~~---- 67 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE--YLIDMP---- 67 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT--HHHHCH----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh--CChHhh----
Confidence 3589999999988888764322 223478999999999999999987421 223332221 111110
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCC-CCCcEEEEEeCC
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNG-HHESKILITTRD 325 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 325 (832)
..+... .+.-.|++|++.....+....+...+... ..+.+||.||..
T Consensus 68 -----------------~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 -----------------MELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -----------------HHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -----------------hhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 111111 22347899999765544444555555432 345678888763
No 198
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.78 E-value=0.00051 Score=73.54 Aligned_cols=187 Identities=14% Similarity=0.046 Sum_probs=100.4
Q ss_pred CceecchhhHHHHHHHHhccCC------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.+..++.+.+++..... ......+.+.|+|.+|+|||++|+.+++. ... ..+.++++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc--
Confidence 4699999999999888732110 00113467899999999999999999862 221 2333333321110
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc-----------ccchhhhhhhcC----CCCCcE
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY-----------KKWDPFFSCLKN----GHHESK 318 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~----~~~gs~ 318 (832)
. .......+...+...-...+.+|+||+++.-.. .....+...+.. ......
T Consensus 188 ------------~-~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 ------------Y-VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred ------------c-cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 000111112222222234567999999953200 001122222211 122345
Q ss_pred EEEEeCCHHHH-HH-hCC-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh-HHHHHH
Q 003300 319 ILITTRDRSVA-LQ-LGS-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL-AAKVIG 390 (832)
Q Consensus 319 iivTtr~~~~~-~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 390 (832)
||.||...... .. ... ...+.+...+.++...++...+..... .-..+....+++.+.|+.- +|..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666643211 11 122 246889999999999999887643222 1224566789999988644 555543
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=0.00013 Score=74.86 Aligned_cols=149 Identities=14% Similarity=0.025 Sum_probs=93.3
Q ss_pred cchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChh-hhccCCeeEEEEeCC-CccHHHHHHHHHHH
Q 003300 184 GRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIWVCVSD-TFEGIRVAKAIIEG 261 (832)
Q Consensus 184 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 261 (832)
|-++.++.+...+... ......++|+.|+||||+|+.+++... ....+....++..++ ...+++ .+++++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3455667777777543 357889999999999999999986211 111122345554432 222222 2333333
Q ss_pred hCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH-HHHHHhCCcCeeeC
Q 003300 262 LGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR-SVALQLGSIDIIPV 340 (832)
Q Consensus 262 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~~~~~~~~~l 340 (832)
..... ..+++-++|+|+++.-+....+.+...+....+.+.+|++|.+. .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32211 02456789999997766566677777777666778888877554 333333334 8999
Q ss_pred CCCChHHHHHHHHHHh
Q 003300 341 KELGEGECCLLFKQIA 356 (832)
Q Consensus 341 ~~L~~~~~~~lf~~~~ 356 (832)
.++++++....+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988765
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.75 E-value=0.0004 Score=71.40 Aligned_cols=181 Identities=17% Similarity=0.105 Sum_probs=99.3
Q ss_pred CceecchhhHHHHHHHHhccCC-------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG-------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.+++|.+..++++.+++...-. ......+.+.|+|.+|+|||+||+++++. .... .+.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~---~i~v~------~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN---FISIK------GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE---EEEEC------HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC---EEEEE------hH
Confidence 4689999888888877653200 00123457899999999999999999973 2222 22222 12
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCC--------------cccchhhhhhhcC--CCCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGD--------------YKKWDPFFSCLKN--GHHE 316 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~g 316 (832)
++.... .+.. ... +...+.......+.+|++|+++.-. ......+...+.. ...+
T Consensus 84 ~l~~~~---~g~~---~~~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMW---FGES---EAN---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHH---HTTC---TTH---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhh---cCch---HHH---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222221 1111 111 2223333334567899999995310 0012233333332 2335
Q ss_pred cEEEEEeCCHHHHH-H-hC---CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhH
Q 003300 317 SKILITTRDRSVAL-Q-LG---SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA 385 (832)
Q Consensus 317 s~iivTtr~~~~~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 385 (832)
..||.||....... . .. -...+.+...+.++-.+++......... ...... ..++..+.|.|=+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 66777777653221 1 11 2347899999999988988876643221 112222 3566677777643
No 201
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.73 E-value=7.5e-06 Score=86.33 Aligned_cols=91 Identities=15% Similarity=0.041 Sum_probs=55.7
Q ss_pred hhcccccEEEecCccccccCCCcEEecCCCccccccccCCCCceeEEEeCCcCcccccccccCCCcccEEeccCccCccc
Q 003300 442 SKLACLRALVIRQSLVIRLSSSPFRLHSNLIREIPKNVGKLIHLRYLNLSELGIERLPKTLCELYNLQKLDIRRCRNLKE 521 (832)
Q Consensus 442 ~~~~~Lr~L~~~~~~~~~~~~r~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~ 521 (832)
..+++||+|.+.+... ...+++.+....++..+..+++|+.|+|++|.-..+|. +. +++|++|++..|.....
T Consensus 136 ~~l~~L~~L~l~~~~~-----e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDF-----EEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HHHTTCSEEEECCCCT-----TTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred hhcchhhheeecCcch-----hhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChH
Confidence 3677888887754221 00111111122355556778899999998884224554 43 78999999988764332
Q ss_pred cCcccc--cccCCceeecCC
Q 003300 522 LPAGIG--KLKNMRSLLNGE 539 (832)
Q Consensus 522 lp~~l~--~l~~L~~L~l~~ 539 (832)
....+. .+++|++|+|+.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHHHccCCCCcEEEEec
Confidence 222333 689999998863
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.67 E-value=0.00062 Score=74.07 Aligned_cols=188 Identities=15% Similarity=0.078 Sum_probs=100.9
Q ss_pred CceecchhhHHHHHHHHhcc----CC--CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCE----SG--EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.+..++.+.+.+..+ .- ......+.+.++|++|+|||+||+++++. . ...-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence 46899999998888876321 00 00123467899999999999999999973 2 111233332211
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc-------ccc----hhhhhhhcC---CCCCcEE
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY-------KKW----DPFFSCLKN---GHHESKI 319 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~----~~l~~~l~~---~~~gs~i 319 (832)
+.... .+. .......+. ...-..++.+|++|+++.... ... ..+...+.. ...+..|
T Consensus 204 l~~~~---~g~---~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LVSKW---LGE---SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HHhhh---cch---HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11000 011 111222222 222235678999999964311 011 112222221 1345667
Q ss_pred EEEeCCHHHHH--Hh-CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC-hhHHHHHH
Q 003300 320 LITTRDRSVAL--QL-GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL-PLAAKVIG 390 (832)
Q Consensus 320 ivTtr~~~~~~--~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 390 (832)
|.||....... .. .....+.+...+.++...++......... .........|++.+.|+ +-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77776542211 11 22346788888888888888887643211 11245567889999985 44555444
No 203
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.67 E-value=0.00015 Score=74.53 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=83.6
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++... +.. ...+.++++.-.. .++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~-~~~v~v~~~~~~~--~l~~--- 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSA-RSD-RPLVTLNCAALNE--SLLE--- 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSS-CSS-SCCCEEECSSCCH--HHHH---
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCc-ccC-CCeEEEeCCCCCh--HHHH---
Confidence 3589999999999888766432 234578999999999999999987311 111 1234455554322 1221
Q ss_pred HHhCCCCCCCCcH--HHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCC-----------CCCcEEEEEeCCH
Q 003300 260 EGLGVSASGLSEF--ESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNG-----------HHESKILITTRDR 326 (832)
Q Consensus 260 ~~l~~~~~~~~~~--~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~ 326 (832)
..+.....+.... ......+.. ...-.|+||++..-.......+...+... ....+||.||...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred HHhcCccccccCchhhhhcCHHHh---cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 1222111110000 000001111 12347899999765544444455544432 1346788888753
Q ss_pred H------------HHHHhCCcCeeeCCCCC--hHHHHHHHHH
Q 003300 327 S------------VALQLGSIDIIPVKELG--EGECCLLFKQ 354 (832)
Q Consensus 327 ~------------~~~~~~~~~~~~l~~L~--~~~~~~lf~~ 354 (832)
- +...+. ...+.+.+|. .++...++..
T Consensus 148 l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHH
Confidence 1 111111 3357788887 4555444443
No 204
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.67 E-value=0.00012 Score=73.93 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=81.0
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
..++|.+..+.++.+.+..... ....+.|+|..|+|||++|+.+++... ..-...+.++++.-. ...+...+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~~-~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGSC-HHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCCC-hhHHHHHhc
Confidence 3589999999888877764322 224578999999999999999997421 111234556655432 111111111
Q ss_pred HHhCCCCCCCCc-HHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCC-----------CCCcEEEEEeCCH-
Q 003300 260 EGLGVSASGLSE-FESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNG-----------HHESKILITTRDR- 326 (832)
Q Consensus 260 ~~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~- 326 (832)
+........ .......+. ....-+|++|++..-.......+...+... ....+||.||...
T Consensus 79 ---g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~ 152 (265)
T 2bjv_A 79 ---GHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADL 152 (265)
T ss_dssp ---CCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCH
T ss_pred ---CCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCH
Confidence 111000000 000000011 123458999999765544444455444321 1346788888753
Q ss_pred -H----------HHHHhCCcCeeeCCCCCh--HHHHHHHH
Q 003300 327 -S----------VALQLGSIDIIPVKELGE--GECCLLFK 353 (832)
Q Consensus 327 -~----------~~~~~~~~~~~~l~~L~~--~~~~~lf~ 353 (832)
. +...+. ...+.+.+|.+ ++-..++.
T Consensus 153 ~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~ 191 (265)
T 2bjv_A 153 PAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAE 191 (265)
T ss_dssp HHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHH
Confidence 1 111222 23678888876 55544433
No 205
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=0.00026 Score=73.44 Aligned_cols=166 Identities=15% Similarity=0.240 Sum_probs=91.5
Q ss_pred ceecchhhHHHHHHHHhccCC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
.++|.+..++.+...+..... ........+.++|.+|+|||++|+.++.. ....-...+.++++.-.... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 478999998888887765311 01123468999999999999999999973 22222235566654332211 1111
Q ss_pred HHHHhCCCCC--CCCcHHHHHHHHHHHHc-CCceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEe
Q 003300 258 IIEGLGVSAS--GLSEFESLMKQIQEYIM-GKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITT 323 (832)
Q Consensus 258 i~~~l~~~~~--~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 323 (832)
+ ++.... ...... .+...+. ...-++++|++...+......+...+.... +...||.||
T Consensus 95 l---~g~~~~~~~~~~~~----~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGG----QLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp H---HCCCTTSTTTTTCC----HHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred h---cCCCCccccccccc----hHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 1 222111 100001 1222222 344699999997665555555655553321 233477777
Q ss_pred CCH---------------HH--------HHH-----hCC-cCeeeCCCCChHHHHHHHHHHh
Q 003300 324 RDR---------------SV--------ALQ-----LGS-IDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 324 r~~---------------~~--------~~~-----~~~-~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
... .+ ... ... ...+.+.+++.++...++....
T Consensus 168 n~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 168 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp STTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHT
T ss_pred ccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 751 10 111 122 2467788888888877777643
No 206
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.65 E-value=0.00032 Score=75.43 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=41.6
Q ss_pred ccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCC-CCCCCCCcCeEEEcCC
Q 003300 734 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLTIWKC 802 (832)
Q Consensus 734 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 802 (832)
+..+.+|+.+.+.+ +++.+ ....+..+++|+.++|.+ .++.++. .+.+|++|+.+.+..+
T Consensus 293 F~~~~~L~~i~l~~--~i~~I-----~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFI-----GEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEE-----CTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccc--cccee-----chhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc
Confidence 45677888887654 33332 335577789999999954 3777765 4667999999988654
No 207
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=6.8e-06 Score=75.74 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=53.4
Q ss_pred ccCCcccceeeccccccccccccccccccccCCC----CccceeeecccccccCCC-CCCCCCCCcCeEEEcCChhhHH
Q 003300 734 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIM----PRLSSLEVRSCNKLKALP-DYLLQTTTLQDLTIWKCPILEN 807 (832)
Q Consensus 734 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l----~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~L~~ 807 (832)
+..+++|+.|+|++|..+++.... .+..+ ++|++|+|++|+.++.-- ..+..+++|+.|+|++|+.+++
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~-----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLE-----RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHH-----HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHH-----HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 357899999999999988887652 22233 589999999999887611 1244689999999999998775
No 208
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=1.3e-05 Score=79.96 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=56.8
Q ss_pred EEecCCCcccccccc----CCCCceeEEEeCCcCcccc---cccccCCCcccEEeccCccCccccCccccccc--CCcee
Q 003300 465 FRLHSNLIREIPKNV----GKLIHLRYLNLSELGIERL---PKTLCELYNLQKLDIRRCRNLKELPAGIGKLK--NMRSL 535 (832)
Q Consensus 465 L~L~~n~l~~lp~~l----~~l~~L~~L~Ls~~~i~~l---p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~--~L~~L 535 (832)
++++.|....++..+ .++++|++|+|++|.|+.+ |..+..+++|++|+|++|... .+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceE
Confidence 344555443333221 3567788888888877654 355667788888888877633 33 2244444 78888
Q ss_pred ecCCccCcccccC-------CCCCCCCCccCC
Q 003300 536 LNGETYSLKYMPV-------GISKLTSLRTLD 560 (832)
Q Consensus 536 ~l~~~~~~~~~p~-------~l~~L~~L~~L~ 560 (832)
++++|.....+|. .+..+++|+.|+
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 8888765544442 245566777766
No 209
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.60 E-value=0.00085 Score=69.38 Aligned_cols=153 Identities=13% Similarity=0.136 Sum_probs=83.8
Q ss_pred CceecchhhHHHHHHHHhcc--CCC------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCcc-
Q 003300 180 GEVCGRVDEKNELLSKLLCE--SGE------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE- 250 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~- 250 (832)
..++|.+..++.+...+... ... .......+.++|.+|+|||++|+.+++. ... ..+.++++.-.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 45899999999988877541 000 0012356889999999999999999973 222 234454433211
Q ss_pred ------HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCccc------------chhhhhhhcC
Q 003300 251 ------GIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKK------------WDPFFSCLKN 312 (832)
Q Consensus 251 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------------~~~l~~~l~~ 312 (832)
....+..+...... .+.. .+.+.+|++|+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11122222221100 0000 1235799999996643332 3334443332
Q ss_pred C----------CCCcEEEEEeC----C-----HHHHHHhCCcCeeeCCCCChHHHHHHHHH
Q 003300 313 G----------HHESKILITTR----D-----RSVALQLGSIDIIPVKELGEGECCLLFKQ 354 (832)
Q Consensus 313 ~----------~~gs~iivTtr----~-----~~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 354 (832)
. ..+..+|.|+. . +.+...+ ...+.+.+++.++...++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 1 12445666642 1 1222222 24699999999998888874
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.59 E-value=0.00048 Score=75.41 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=102.2
Q ss_pred CceecchhhHHHHHHHHhccCCC-------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGE-------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.+++|.+..++++.+++...-.. .....+-+.|+|.+|+|||++|+++++. ... ..+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~---~fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGA---FFFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSS---EEEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCC---CEEEEEchH-----
Confidence 35899999999998877542000 0123456899999999999999999872 222 233333211
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc-----------ccchhhhhhhcC--CCCCcEE
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY-----------KKWDPFFSCLKN--GHHESKI 319 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~i 319 (832)
+...+ ...........+.....+++.+|+||+++.-.. .....+...+.. ...+..|
T Consensus 274 -----l~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -----IMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -----HHTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -----hhhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11110 011122223334444456778999999832110 111223333332 2334566
Q ss_pred EEEeCCHHH-HHHh----CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC-hhHHHHH
Q 003300 320 LITTRDRSV-ALQL----GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL-PLAAKVI 389 (832)
Q Consensus 320 ivTtr~~~~-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 389 (832)
|.||..... ...+ .-...+.+...+.++-.+++...+..... ..... ..++++.+.|+ +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 667765532 1111 12346899999999999999887643211 11122 25677777775 5444444
No 211
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0016 Score=68.22 Aligned_cols=204 Identities=15% Similarity=0.071 Sum_probs=110.0
Q ss_pred CceecchhhHHHHHHHHhcc----CC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCE----SG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|-++.+++|.+.+.-+ +- ......+-|.++|++|.|||.||+++++. .... .+.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHHhhc--
Confidence 45788888887777655421 10 01224567899999999999999999983 3322 33444332111
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHH-HHHcCCceEEEEeCCCCCCc--------cc------chhhhhhhcC--CCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQ-EYIMGKKFFLVLDDVWDGDY--------KK------WDPFFSCLKN--GHH 315 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~--------~~------~~~l~~~l~~--~~~ 315 (832)
....+.+..+..+. ..-+..+++|++|+++.--. .. ...+...+.. ...
T Consensus 221 --------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 --------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp --------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred --------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 01111222222222 22246789999999954210 00 1122222322 234
Q ss_pred CcEEEEEeCCHHHH-----HHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhH-HHHH
Q 003300 316 ESKILITTRDRSVA-----LQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLA-AKVI 389 (832)
Q Consensus 316 gs~iivTtr~~~~~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-i~~~ 389 (832)
+..||.||...+.. ..-.-...+.+...+.++-.++|..+.-.... ....+ ..++++.+.|+-=| |..+
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~SGADi~~l 361 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCSGADVKGV 361 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCCHHHHHHH
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCCHHHHHHH
Confidence 45567777654321 11123568999999999889999877633221 12223 35778888876422 3222
Q ss_pred H-----HHhcCCC---CHHHHHHHHhhh
Q 003300 390 G-----NLLRSKS---TVKEWQRILESE 409 (832)
Q Consensus 390 ~-----~~l~~~~---~~~~w~~~~~~~ 409 (832)
. ..++.+. +.++++.+++..
T Consensus 362 ~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 362 CTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 2 1233332 467777776643
No 212
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.54 E-value=0.00065 Score=74.31 Aligned_cols=95 Identities=14% Similarity=0.039 Sum_probs=59.6
Q ss_pred EEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEe---------CC----H-HH-HHHhCCcCeeeCCCCChHHHHHHHH
Q 003300 289 FLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT---------RD----R-SV-ALQLGSIDIIPVKELGEGECCLLFK 353 (832)
Q Consensus 289 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt---------r~----~-~~-~~~~~~~~~~~l~~L~~~~~~~lf~ 353 (832)
++++|+++.-+.+.+..+...+...... -+|+.| .+ . .+ .........+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999776666667777666554434 344344 11 1 11 1122334568999999999999998
Q ss_pred HHhhccCCCCCccchHHHHHHHHHHc-CCChhHHHH
Q 003300 354 QIAFLRRSFEDREKLEPMGRKIAHKC-KGLPLAAKV 388 (832)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~~ 388 (832)
..+..... .-..+....|++.+ .|.|.....
T Consensus 377 ~~~~~~~~----~~~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 377 IRAQTEGI----NISEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHTC----CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhCC----CCCHHHHHHHHHHccCCCHHHHHH
Confidence 87643221 12345667788888 788865443
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.52 E-value=7.7e-05 Score=67.52 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=49.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKK 287 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 287 (832)
..++|+|..|+|||||++.++...... . ..+++++...-... .+..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g-~~~~~~~~~~~~~~------------------------------~~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-G-KNAAYIDAASMPLT------------------------------DAAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-T-CCEEEEETTTSCCC------------------------------GGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-C-CcEEEEcHHHhhHH------------------------------HHHhCC
Confidence 478999999999999999999742221 1 12666654432211 012345
Q ss_pred eEEEEeCCCCCCcccchhhhhhhcC-CCCCc-EEEEEeCC
Q 003300 288 FFLVLDDVWDGDYKKWDPFFSCLKN-GHHES-KILITTRD 325 (832)
Q Consensus 288 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~iivTtr~ 325 (832)
-+||+||+.......-+.+...+.. ...|. +||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 6889999955332222223333322 11233 48888874
No 214
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.50 E-value=2.8e-05 Score=71.64 Aligned_cols=42 Identities=10% Similarity=0.023 Sum_probs=33.5
Q ss_pred CcccceeeccccccccccccccccccccCCCCccceeeecccccccC
Q 003300 737 FPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKA 783 (832)
Q Consensus 737 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 783 (832)
.++|++|+|++|.++++-.. ..+..+++|+.|+|++|+.++.
T Consensus 113 ~~~L~~L~Ls~C~~ITD~Gl-----~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 113 QKSMLEMEIISCGNVTDKGI-----IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHCCEEEEESCTTCCHHHH-----HHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCEEEcCCCCcCCHHHH-----HHHhcCCCCCEEECCCCCCCCc
Confidence 35799999999988887655 2345689999999999997765
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0028 Score=67.49 Aligned_cols=177 Identities=19% Similarity=0.152 Sum_probs=91.6
Q ss_pred CceecchhhHHHHHHHHhccCC-------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG-------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|-++.+++|.+.+.-.-. -+....+-+.++|++|.|||+||+++++. ...+ .+.|+.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCE---EEEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---eEEEecchhhc--
Confidence 4688888888887765542110 01234567899999999999999999983 3322 33444332111
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHH-HHHcCCceEEEEeCCCCC---------Cc-cc----chhhhhhhcC--CCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQ-EYIMGKKFFLVLDDVWDG---------DY-KK----WDPFFSCLKN--GHH 315 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~---------~~-~~----~~~l~~~l~~--~~~ 315 (832)
......+..+..+. ..-...+++|++|+++.. .. .. ...+...+.. ...
T Consensus 245 --------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 --------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp --------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred --------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 01111122222222 223467899999998420 00 01 1223332222 234
Q ss_pred CcEEEEEeCCHHHHH-H-h--CC-cCeeeCCCCCh-HHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC
Q 003300 316 ESKILITTRDRSVAL-Q-L--GS-IDIIPVKELGE-GECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL 382 (832)
Q Consensus 316 gs~iivTtr~~~~~~-~-~--~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 382 (832)
+..||.||...+... . . +. ...+.+..++. ++-..+|..+.-.. ......++ ..+++.+.|+
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~-~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM-SLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS-CBCTTCCH----HHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC-CCCcccCH----HHHHHHCCCC
Confidence 556777886543211 1 1 12 34677865644 44455665554322 11122233 5677778775
No 216
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.47 E-value=0.00047 Score=80.84 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=80.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc------CCe-eEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEK-VIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~-~~wv~~~~~~~~~ 252 (832)
..++||+.+++++...|.... ..-+.++|.+|+|||++|+.+++. .... ... .+.++.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~~~~g~----- 246 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT----- 246 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEEecccc-----
Confidence 359999999999999997642 234789999999999999999873 2111 011 12222100
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHHHHh
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVALQL 332 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~ 332 (832)
.. ......... ..+...-..++.+|++|.. .+....+...+. ....++|.||.........
T Consensus 247 --------~~--~G~~e~~l~---~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 247 --------KY--RGEFEDRLK---KVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYI 307 (758)
T ss_dssp ----------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHH
T ss_pred --------cc--cchHHHHHH---HHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHh
Confidence 00 000111222 2233333467789999922 122222333332 2345677777654421111
Q ss_pred -------CCcCeeeCCCCChHHHHHHHHHHh
Q 003300 333 -------GSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 333 -------~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
.....+.+++.+.++..+++....
T Consensus 308 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 123579999999999999998654
No 217
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0029 Score=67.47 Aligned_cols=178 Identities=14% Similarity=0.107 Sum_probs=98.6
Q ss_pred CceecchhhHHHHHHHHhcc----CC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCE----SG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|-++.+++|.+.+.-+ .- ......+-|.++|++|.|||.||+++++. .... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc--
Confidence 46788888877776655421 10 01234578999999999999999999983 3322 33444332111
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCCC------ccc--------chhhhhhhcC--CCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDGD------YKK--------WDPFFSCLKN--GHH 315 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~------~~~--------~~~l~~~l~~--~~~ 315 (832)
......+.....+.. .-...+++|++|+++..- ... +..+...+.. ...
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 011112222222222 224678999999995421 000 1123333322 234
Q ss_pred CcEEEEEeCCHHHHHH-h-C---CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 316 ESKILITTRDRSVALQ-L-G---SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 316 gs~iivTtr~~~~~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
+..||.||........ + . -...+.+...+.++-.++|..+...... ....++ ..+++.+.|+-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 5567778876543321 1 1 1347888888888888888876643221 112223 56778888764
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.43 E-value=0.00095 Score=78.41 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=87.5
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhh----ccCCeeEE-EEeCCCccHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIW-VCVSDTFEGIRV 254 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~w-v~~~~~~~~~~~ 254 (832)
..++||+.+++++++.|... ...-+.++|.+|+|||++|+.++...... ......+| ++.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 45899999999999999754 33456899999999999999998731110 01122232 111110
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHc-CCceEEEEeCCCCCC--------cccchh-hhhhhcCCCCCcEEEEEeC
Q 003300 255 AKAIIEGLGVSASGLSEFESLMKQIQEYIM-GKKFFLVLDDVWDGD--------YKKWDP-FFSCLKNGHHESKILITTR 324 (832)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~~~~~~-l~~~l~~~~~gs~iivTtr 324 (832)
+. ........+.....+.+.+. .++.+|++|+++.-. ...... +...+ ...+.++|.+|.
T Consensus 254 -------~~-~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l--~~~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LA-GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTT 323 (758)
T ss_dssp --------C-CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS--SSCCCEEEEEEC
T ss_pred -------hc-cccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH--hCCCeEEEEEeC
Confidence 00 01112233333444444443 457899999995431 111111 22222 123456777776
Q ss_pred CHHHHHHh-------CCcCeeeCCCCChHHHHHHHHHHh
Q 003300 325 DRSVALQL-------GSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 325 ~~~~~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
........ .....+.+.+.+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 54432111 112368999999999988887654
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.42 E-value=0.00019 Score=84.28 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=90.8
Q ss_pred CceecchhhHHHHHHHHhccCCC---CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGE---QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAK 256 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 256 (832)
..++|.+..++.+...+.....+ .......+.++|.+|+|||++|+.+++. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 45899999998888877653211 1123447999999999999999999973 22222345566654321100
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCC-----------CCCcEEEEEeCC
Q 003300 257 AIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNG-----------HHESKILITTRD 325 (832)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 325 (832)
......+...+. +...-+|+||++...+.+....+...+..+ ....+||+||..
T Consensus 565 ------------~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ------------STSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------CCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------ccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000111111111 123458999999776666666666655432 134588888873
Q ss_pred -----HHH----HHHh-----CC-cCeeeCCCCChHHHHHHHHHHh
Q 003300 326 -----RSV----ALQL-----GS-IDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 326 -----~~~----~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
..+ ...+ .. ...+.+.+++.++-..++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 111 1111 22 2588999999999888777654
No 220
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.41 E-value=7.6e-05 Score=74.38 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=56.6
Q ss_pred CcEEecCCCcccc---ccccCCCCceeEEEeCCcCcccccccccCCC--cccEEeccCccCccccCc-------cccccc
Q 003300 463 SPFRLHSNLIREI---PKNVGKLIHLRYLNLSELGIERLPKTLCELY--NLQKLDIRRCRNLKELPA-------GIGKLK 530 (832)
Q Consensus 463 r~L~L~~n~l~~l---p~~l~~l~~L~~L~Ls~~~i~~lp~~~~~l~--~L~~L~L~~~~~~~~lp~-------~l~~l~ 530 (832)
+.|+|++|.++.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+|. .+..++
T Consensus 173 ~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P 251 (267)
T 3rw6_A 173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFP 251 (267)
T ss_dssp CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCT
T ss_pred CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCc
Confidence 4456777777764 45667899999999999999876 3345555 999999999987666652 367899
Q ss_pred CCceeec
Q 003300 531 NMRSLLN 537 (832)
Q Consensus 531 ~L~~L~l 537 (832)
+|+.||-
T Consensus 252 ~L~~LDg 258 (267)
T 3rw6_A 252 KLLRLDG 258 (267)
T ss_dssp TCCEESS
T ss_pred ccCeECC
Confidence 9999963
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.39 E-value=0.0025 Score=63.77 Aligned_cols=204 Identities=15% Similarity=0.067 Sum_probs=103.2
Q ss_pred CceecchhhHHHHHHHHh---ccCCC---CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLL---CESGE---QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.+..++++.+.+. ..... .....+-+.|+|.+|+||||+|+.+++. .... .+.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH---
Confidence 468999887776665432 21100 0012335889999999999999999973 2222 23333222110
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcc--------------cchhhhhhhcC--CCCCc
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYK--------------KWDPFFSCLKN--GHHES 317 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~gs 317 (832)
.. .......+...+.......+.++++|+++.-... ....+...+.. ...+.
T Consensus 84 -----------~~-~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -----------MF-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -----------SC-CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -----------Hh-hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 00 0111222333333334456779999998331100 11122222221 22345
Q ss_pred EEEEEeCCHHHH-HHh-C---CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCC-ChhHHHHHHH
Q 003300 318 KILITTRDRSVA-LQL-G---SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKG-LPLAAKVIGN 391 (832)
Q Consensus 318 ~iivTtr~~~~~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 391 (832)
.||.||...... ... . -...+.+...+.++-.+++........ ..+... ...++..+.| .+--|..+..
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHHHHHH
Confidence 677777654321 111 1 134678888888888888877653211 111111 2457778888 6654443321
Q ss_pred -----Hhc-CC--CCHHHHHHHHhh
Q 003300 392 -----LLR-SK--STVKEWQRILES 408 (832)
Q Consensus 392 -----~l~-~~--~~~~~w~~~~~~ 408 (832)
... .+ -+.++++.+++.
T Consensus 227 ~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 227 EAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHH
Confidence 111 11 256677666654
No 222
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0023 Score=68.03 Aligned_cols=178 Identities=15% Similarity=0.058 Sum_probs=96.4
Q ss_pred CceecchhhHHHHHHHHhc----cCC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLC----ESG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|-++.+++|.+.+.- ++- -.....+-|.++|++|.|||.||+++++. .... .+.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhhc--
Confidence 3578888888887765432 110 01235677889999999999999999983 3322 33443332110
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHH-HHHcCCceEEEEeCCCCCCc------cc--------chhhhhhhcC--CCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQ-EYIMGKKFFLVLDDVWDGDY------KK--------WDPFFSCLKN--GHH 315 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~------~~--------~~~l~~~l~~--~~~ 315 (832)
......+..+..+. ..-...+++|++|+++..-. .. ...+...+.. ...
T Consensus 282 --------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 --------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp --------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred --------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 01111222222222 22346789999999854210 00 1112222222 223
Q ss_pred CcEEEEEeCCHHHH-----HHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 316 ESKILITTRDRSVA-----LQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 316 gs~iivTtr~~~~~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
+..||.||...... ..-.-...+.+...+.++-.++|..+...... ....++ ..|++.+.|+-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCCC
Confidence 44566677644221 11123568889888988888999877643211 112223 56778888863
No 223
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.35 E-value=0.0025 Score=66.44 Aligned_cols=175 Identities=20% Similarity=0.192 Sum_probs=93.8
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
..++|.+..++.+...+..... .......+.++|.+|+||||||+.+++. ....|. .++..-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCH--------
Confidence 4588888777777766643200 0123457899999999999999999973 322211 1111100111
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC------------------CCcEEEE
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH------------------HESKILI 321 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 321 (832)
..+.. +...+ .++-++++|++..-.....+.+...+.... +...++-
T Consensus 91 -------------~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 91 -------------GDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -------------HHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -------------HHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 11111 11112 234577888885433222333332221110 0112222
Q ss_pred -EeCCHHHHHHh-CC-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChhHHH
Q 003300 322 -TTRDRSVALQL-GS-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPLAAK 387 (832)
Q Consensus 322 -Ttr~~~~~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 387 (832)
|++...+...+ .. ...+.+++.+.++-.+++.+.+..... .-..+.+..|++.+.|.|-.+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHH
Confidence 33332221111 11 235789999999999999987643221 2235678899999999997543
No 224
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=0.00011 Score=69.48 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=10.5
Q ss_pred HHHhhcccccEEEecCc
Q 003300 439 KLFSKLACLRALVIRQS 455 (832)
Q Consensus 439 ~~f~~~~~Lr~L~~~~~ 455 (832)
..+...+.|+.|.+.++
T Consensus 30 ~~l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNI 46 (185)
T ss_dssp HHHTTCTTCCEEECTTC
T ss_pred HHHhcCCCCCEEEecCC
Confidence 34556667777766655
No 225
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.20 E-value=4.8e-05 Score=72.03 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=35.7
Q ss_pred CcEEecCC-Cccc-----cccccCCCCceeEEEeCCcCccc-----ccccccCCCcccEEeccCccCccc----cCcccc
Q 003300 463 SPFRLHSN-LIRE-----IPKNVGKLIHLRYLNLSELGIER-----LPKTLCELYNLQKLDIRRCRNLKE----LPAGIG 527 (832)
Q Consensus 463 r~L~L~~n-~l~~-----lp~~l~~l~~L~~L~Ls~~~i~~-----lp~~~~~l~~L~~L~L~~~~~~~~----lp~~l~ 527 (832)
++|+|++| .+.. +...+...++|++|+|++|.|.. +...+...++|++|+|++|..... +...+.
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~ 118 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ 118 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence 55555555 4432 33444445555555555555441 233344445555555555543221 233344
Q ss_pred cccCCceeec
Q 003300 528 KLKNMRSLLN 537 (832)
Q Consensus 528 ~l~~L~~L~l 537 (832)
..++|++|++
T Consensus 119 ~n~~L~~L~L 128 (185)
T 1io0_A 119 SNTSLIELRI 128 (185)
T ss_dssp GCSSCCEEEC
T ss_pred hCCCceEEEe
Confidence 4455555555
No 226
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.18 E-value=0.004 Score=66.81 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=45.9
Q ss_pred ccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCC-CCCCCCCcCeEEEcCChhhH
Q 003300 734 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLTIWKCPILE 806 (832)
Q Consensus 734 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~L~ 806 (832)
+..+.+|+.+.|.+ +++.+ ....+..+.+|+.+.|.+ .++.++. .+.+|++|+.+++.++....
T Consensus 307 F~~c~~L~~i~lp~--~v~~I-----~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 307 FAGCISLKSIDIPE--GITQI-----LDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEE-----CTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred ecCCCCcCEEEeCC--cccEe-----hHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeeh
Confidence 56778888887754 33333 235677889999999954 3777765 46789999999999876543
No 227
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.16 E-value=0.0063 Score=65.99 Aligned_cols=179 Identities=14% Similarity=0.033 Sum_probs=96.4
Q ss_pred CceecchhhHHHHHHHHhccCCC------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGE------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.++.++++.+....-... .....+-+.|+|++|+|||+||+.++.. .... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH--
Confidence 46899988777666554321100 0012234889999999999999999973 2222 233443321110
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcc--------------cchhhhhhhcC--CCCCc
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYK--------------KWDPFFSCLKN--GHHES 317 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~gs 317 (832)
............+.......+.+|++|+++.-... ....+...+.. ...+.
T Consensus 89 -------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 -------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred -------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 00011122233344444567899999999542110 12223322221 12355
Q ss_pred EEEEEeCCHHHHHH--hC---CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 318 KILITTRDRSVALQ--LG---SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 318 ~iivTtr~~~~~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
.||.||...+.... .. -...+.+...+.++-.+++..+...... ..... ...+++.+.|+.
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 67777776643221 11 1337888888888888888776543211 11112 345788888876
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0017 Score=69.27 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=95.9
Q ss_pred CceecchhhHHHHHHHHhc----cCC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLC----ESG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|-++.+++|.+.+.. ++- ......+-|.++|++|.|||.||+++++. .... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhhh--
Confidence 4688988888888765432 110 01234678899999999999999999983 3322 33343322110
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCC-----Ccc-----c----chhhhhhhcC--CCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDG-----DYK-----K----WDPFFSCLKN--GHH 315 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-----~~~-----~----~~~l~~~l~~--~~~ 315 (832)
......+.....+.. .-...+++|++|+++.- +.. . ...+...+.. ...
T Consensus 254 --------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 254 --------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp --------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred --------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 011112222222222 22356899999998431 000 0 1123333322 223
Q ss_pred CcEEEEEeCCHHHHHH-h---C-CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC
Q 003300 316 ESKILITTRDRSVALQ-L---G-SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL 382 (832)
Q Consensus 316 gs~iivTtr~~~~~~~-~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 382 (832)
+..||.||........ + + -...+.+...+.++-.++|..+.-.... ...-++ .++++.+.|+
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 4456667775543221 1 1 1457888888888888888776543221 112223 5677888875
No 229
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.05 E-value=0.0015 Score=68.22 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=85.9
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
..++|+++.++.+...+.... -+.++|.+|+|||+||+.+++ ..... ...+.+.......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~--~~~~~---~~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAK--TMDLD---FHRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHH--HTTCC---EEEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHH--HhCCC---eEEEecCCCCChhhcCCcee
Confidence 458999999999888886532 488999999999999999987 23222 23344444433333221110
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCC---ceEEEEeCCCCCCcccchhhhhhhcCC-----------CCCcEEEEEeCC
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGK---KFFLVLDDVWDGDYKKWDPFFSCLKNG-----------HHESKILITTRD 325 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 325 (832)
. . ...+.. .++.. ..++++|+++.........+...+... .....||.|+..
T Consensus 94 ~--~-~~~~~~-----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 94 Y--N-QHKGNF-----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp E--E-TTTTEE-----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred e--c-CCCCce-----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 0 0 000000 00011 258999999765544444444443321 223455556552
Q ss_pred HH------H-HHHhCCcC-eeeCCCCChHHHHHHHHHHhh
Q 003300 326 RS------V-ALQLGSID-IIPVKELGEGECCLLFKQIAF 357 (832)
Q Consensus 326 ~~------~-~~~~~~~~-~~~l~~L~~~~~~~lf~~~~~ 357 (832)
.. + ........ .+.+.+.+.++-.+++.+...
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 1 11112223 588999999999999988764
No 230
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.01 E-value=0.00032 Score=70.89 Aligned_cols=180 Identities=14% Similarity=0.070 Sum_probs=90.9
Q ss_pred CceecchhhHHHHHHHHhccCCC------CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGE------QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
.+++|.+..++++.+.+..-... .....+-+.|+|.+|+|||++|+.+++. ....| +.+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF---FSMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCC---CCCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEechHHHHH---
Confidence 56999998888777765420000 0011233779999999999999999973 32222 1111111000
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc---------------ccchhhhhhhcCC---CC
Q 003300 254 VAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY---------------KKWDPFFSCLKNG---HH 315 (832)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~---~~ 315 (832)
..... ....... .+......++.+|++|+++.-.. .....+...+... ..
T Consensus 83 -------~~~~~--~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 -------MFVGL--GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -------SCSSS--CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -------hhcch--HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 00000 0011111 12222234668999999954211 1122233333221 12
Q ss_pred CcEEEEEeCCHHHHH-H-hC---CcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCChh
Q 003300 316 ESKILITTRDRSVAL-Q-LG---SIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLPL 384 (832)
Q Consensus 316 gs~iivTtr~~~~~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 384 (832)
...||.||....... . .. ....+.+...+.++-.+++......... ...... ..+++.+.|.|-
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL-ANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC-CSSCCT----TTTTSSSCSSCH
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC-CCccCH----HHHHHHcCCCCH
Confidence 245666776543211 1 11 1346888999999999998876532211 111112 346666777653
No 231
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0032 Score=66.28 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=106.6
Q ss_pred CceecchhhHHHHHHHHhcc----CC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCE----SG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|-++.+++|.+.+.-+ +- ......+-|.++|++|.|||.||+++++. .... .+.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~---fi~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSAT---FLRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCE---EEEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCC---EEEEEHHHhh---
Confidence 35778888777777655321 10 01234577999999999999999999983 3322 2333322211
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH-HcCCceEEEEeCCCCCCc------c----c----chhhhhhhcC--CCC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEY-IMGKKFFLVLDDVWDGDY------K----K----WDPFFSCLKN--GHH 315 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~------~----~----~~~l~~~l~~--~~~ 315 (832)
.....+.+..+..+... -+..+++|++|+++..-. . . ...+...+.. ...
T Consensus 254 -------------sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 -------------QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -------------CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -------------hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 00111222223333322 235689999999854110 0 0 1122222222 233
Q ss_pred CcEEEEEeCCHHHHHH-h-C--C-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh-hHHHHH
Q 003300 316 ESKILITTRDRSVALQ-L-G--S-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP-LAAKVI 389 (832)
Q Consensus 316 gs~iivTtr~~~~~~~-~-~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 389 (832)
+..||.||...+.... + . . ...+.+...+.++-.++|..+.-.... ....++ ..+++.+.|+- --|..+
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvdl----~~LA~~T~GfSGADI~~l 395 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVNL----ETLVTTKDDLSGADIQAM 395 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCCH----HHHHHHCCSCCHHHHHHH
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCCCHHHHHHH
Confidence 4556777765543322 1 1 1 346888888888888888877633221 122233 56777787763 222222
Q ss_pred H-----HHhcCCC---CHHHHHHHHhh
Q 003300 390 G-----NLLRSKS---TVKEWQRILES 408 (832)
Q Consensus 390 ~-----~~l~~~~---~~~~w~~~~~~ 408 (832)
. ..++... +.++++.+++.
T Consensus 396 ~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 396 CTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 1 1223322 46777776654
No 232
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.94 E-value=0.0013 Score=67.55 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCC
Q 003300 186 VDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVS 265 (832)
Q Consensus 186 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 265 (832)
...++.+.+++..... .....+.|+|..|+|||+||.++++.... ..-..++++++. ++...+.......
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~------~l~~~l~~~~~~~ 203 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP------SFAIDVKNAISNG 203 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH------HHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH------HHHHHHHHHhccc
Confidence 3344555566654321 12467889999999999999999984220 222345566543 3333333222111
Q ss_pred CCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccch--hhhh-hhcCC-CCCcEEEEEeCCH
Q 003300 266 ASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWD--PFFS-CLKNG-HHESKILITTRDR 326 (832)
Q Consensus 266 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~-~l~~~-~~gs~iivTtr~~ 326 (832)
.... +...+. +.-+||+||+.......|. .+.. .+... ..+..+|+||...
T Consensus 204 -----~~~~----~~~~~~-~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 204 -----SVKE----EIDAVK-NVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp -------CC----TTHHHH-TSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred -----hHHH----HHHHhc-CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 0000 111222 2348999999554333332 1322 22211 1234588888753
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.94 E-value=0.0055 Score=62.45 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999983
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.88 E-value=0.0069 Score=67.52 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=78.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.+++|-+...+.+.+.+.-..-.......++.++|.+|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 357888777776655443211001124568999999999999999999973 32222 2233333222111111110
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcc----cchhhhhhhcCCC---------------CCcEEE
Q 003300 260 EGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYK----KWDPFFSCLKNGH---------------HESKIL 320 (832)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ii 320 (832)
...+. ........+. ......-++++|+++..... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~-~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMK-KAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHH-TTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHH-HhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11110 0001111111 12223448889999654322 1233333332110 234566
Q ss_pred EEeCCH-----HHHHHhCCcCeeeCCCCChHHHHHHHHHHh
Q 003300 321 ITTRDR-----SVALQLGSIDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 321 vTtr~~-----~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
.||... .+...+ ..+.+.+++.++-..++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 676643 222233 468999999999888887754
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.86 E-value=0.0032 Score=73.95 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=91.1
Q ss_pred ceecchhhHHHHHHHHhccCC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
.++|.+..++.+...+..... ........+.++|.+|+|||++|+.+++. .. ...+.++++.-.....
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh----
Confidence 478999888888777654321 01123457999999999999999999973 22 2344555543221100
Q ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHHc-CCceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEeCC
Q 003300 258 IIEGLGVSASGLSEFESLMKQIQEYIM-GKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTRD 325 (832)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 325 (832)
...+-+..++ .........+...++ ....+|+||++...+.+.+..+...+..+. ....||.||..
T Consensus 530 -~~~l~g~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 530 -VSRLIGAPPG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp -CSSSCCCCSC-SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred -HhhhcCCCCC-CcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 0011111111 111011112222222 345789999997766665666666554321 23457778764
Q ss_pred HH----------------------HHHH-----hCC-cCeeeCCCCChHHHHHHHHHHh
Q 003300 326 RS----------------------VALQ-----LGS-IDIIPVKELGEGECCLLFKQIA 356 (832)
Q Consensus 326 ~~----------------------~~~~-----~~~-~~~~~l~~L~~~~~~~lf~~~~ 356 (832)
.. +... ... ...+.+.+++.++...++....
T Consensus 608 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp SCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 11 1001 112 2468899999988887777654
No 236
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.80 E-value=0.0059 Score=59.27 Aligned_cols=85 Identities=21% Similarity=0.201 Sum_probs=52.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCC-----------CC-CCCCcHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGV-----------SA-SGLSEFE 273 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~ 273 (832)
.-.++.|+|.+|+||||||..++. ..-..++|++.....+...+.. +....+. .. ....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345899999999999999999986 1224688888776555544433 3333222 11 1222334
Q ss_pred HHHHHHHHHHcCCceEEEEeCCC
Q 003300 274 SLMKQIQEYIMGKKFFLVLDDVW 296 (832)
Q Consensus 274 ~~~~~l~~~l~~k~~LlVlDdv~ 296 (832)
+..+.+....+.+.-+||+|.+-
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 44555555554457799999873
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.80 E-value=0.0036 Score=74.28 Aligned_cols=135 Identities=16% Similarity=0.279 Sum_probs=72.3
Q ss_pred ceecchhhHHHHHHHHhccCC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHH
Q 003300 181 EVCGRVDEKNELLSKLLCESG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKA 257 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 257 (832)
.++|.+..++.+...+..... ........+.|+|..|+|||++|+.+++. ....-...+.++++.-.... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-H---
Confidence 579999988888887764321 01123468899999999999999999873 21111234455544322110 0
Q ss_pred HHHHh-CCCCC--CCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCC-----------CCcEEEEEe
Q 003300 258 IIEGL-GVSAS--GLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITT 323 (832)
Q Consensus 258 i~~~l-~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 323 (832)
...+ +.+.. +......+...+.+ ...-+|+||++...+.+....+...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 0111 10000 00000111222221 234589999997766666666666665431 244478888
Q ss_pred CC
Q 003300 324 RD 325 (832)
Q Consensus 324 r~ 325 (832)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 75
No 238
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.80 E-value=0.0094 Score=63.83 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=33.2
Q ss_pred ccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCCCCCCCCCcCeEEEcCC
Q 003300 734 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKC 802 (832)
Q Consensus 734 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 802 (832)
+.++.+|+.+.|.. +++.+ ....+..+++|+.+.+.++...- ..+..+.+|+.+.+..+
T Consensus 330 F~~C~~L~~i~ip~--sv~~I-----~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 330 FAGCEQLERIAIPS--SVTKI-----PESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTCTTCCEEEECT--TCCBC-----CGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred hhCCCCCCEEEECc--ccCEE-----hHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 56788888887743 33333 33567788999999998765221 23445778888877643
No 239
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.79 E-value=0.0035 Score=72.18 Aligned_cols=179 Identities=11% Similarity=0.027 Sum_probs=96.4
Q ss_pred CceecchhhHHHHHHHHh----ccCCC---CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLL----CESGE---QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~----~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|-++.+++|.+++. .+.-. .....+-|.++|.+|.|||+||+++++. ...+ .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH-----
Confidence 357888888777776653 22110 1234578999999999999999999984 3222 34443221
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc------cc-----chhhhhhhcC--CCCCcEE
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY------KK-----WDPFFSCLKN--GHHESKI 319 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~-----~~~l~~~l~~--~~~gs~i 319 (832)
+ ... ........+...+....+..+.+|++|+++.--. .. ...+...+.. ...+.-|
T Consensus 274 -l----~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -I----MSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -H----HSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -h----hcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 100 0111122222333333456789999999854210 11 1122222221 1223345
Q ss_pred EEEeCCHHHHH-Hh----CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 320 LITTRDRSVAL-QL----GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 320 ivTtr~~~~~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
|.||...+... .+ .-...+++...+.++-.+++..+...... ....+ ...+++.+.|+-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 55666543221 11 11457889888888888888876532211 11222 357888888874
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.77 E-value=0.00079 Score=68.05 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=46.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe--CCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
.+++.|+|++|+|||+||.+++.. .-..++|++. ....+ .- ..+.+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~-------------~~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLS-------------GY---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSST-------------TC---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhh-------------hh---hcCHHHHHHHHHHHHh
Confidence 456789999999999999999863 1124567776 22211 00 1455666666777776
Q ss_pred CCceEEEEeCCC
Q 003300 285 GKKFFLVLDDVW 296 (832)
Q Consensus 285 ~k~~LlVlDdv~ 296 (832)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 666 99999993
No 241
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.76 E-value=0.0014 Score=63.15 Aligned_cols=113 Identities=13% Similarity=0.031 Sum_probs=63.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCC--CCcHHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASG--LSEFESLMKQIQEYI 283 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 283 (832)
.-.++.|+|..|+||||++..++.. ...+-..++.+....... ....+++.++..... ....+++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4578999999999999999888773 333333455554333221 222445555543221 123334444444444
Q ss_pred cCCce-EEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH
Q 003300 284 MGKKF-FLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR 326 (832)
Q Consensus 284 ~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 326 (832)
.+.++ +||+|.+..-+.+..+.+.. +.. .|..||+|.+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 44444 99999995543333333333 222 267899999853
No 242
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.72 E-value=0.011 Score=64.73 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=35.9
Q ss_pred ceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 181 EVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.++|+++.++.+...+.... -|.++|.+|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHH
Confidence 48999999998888776542 5889999999999999999973
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.51 E-value=0.015 Score=61.84 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+.++|.+|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999997
No 244
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.44 E-value=0.059 Score=56.28 Aligned_cols=157 Identities=9% Similarity=-0.016 Sum_probs=100.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YIM 284 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 284 (832)
-.++..++|..|.||++.+..+..... ...|+....+.+.... +.+++.+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNT---------------------DWNAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTC---------------------CHHHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCC---------------------CHHHHHHHhcCcCCc
Confidence 356889999999999999998887321 2344322222222222 23333333322 234
Q ss_pred CCceEEEEeCCCC-CCcccchhhhhhhcCCCCCcEEEEEeCC-------HHHHHHh-CCcCeeeCCCCChHHHHHHHHHH
Q 003300 285 GKKFFLVLDDVWD-GDYKKWDPFFSCLKNGHHESKILITTRD-------RSVALQL-GSIDIIPVKELGEGECCLLFKQI 355 (832)
Q Consensus 285 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~~~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 355 (832)
+++-++|+|+++. -+...++.+...+....+++.+|++|.. ..+...+ .....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6677889999866 4445677777777665667777776643 2344443 34568999999999998888877
Q ss_pred hhccCCCCCccchHHHHHHHHHHcCCChhHHHH
Q 003300 356 AFLRRSFEDREKLEPMGRKIAHKCKGLPLAAKV 388 (832)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 388 (832)
+...+. .-..+.+..+++.++|...++..
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHH
Confidence 643321 22356778899999998877654
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.41 E-value=0.01 Score=69.45 Aligned_cols=179 Identities=12% Similarity=0.027 Sum_probs=93.4
Q ss_pred CceecchhhHHHHHHHHhcc----CC---CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCE----SG---EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.+++|.+..++++.+++... .- -.......|.|+|.+|+||||||+.++.. .... .+.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~---~i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCE---EEEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCc---EEEEEchH-----
Confidence 46899999998888877531 00 00123457899999999999999999873 2222 23333211
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCceEEEEeCCCCCCc------c-----cchhhhhhhcCC--CCCcEE
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKKFFLVLDDVWDGDY------K-----KWDPFFSCLKNG--HHESKI 319 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~-----~~~~l~~~l~~~--~~gs~i 319 (832)
+.... .......+...+.......+.++++|++..... . ....+...+... .....+
T Consensus 274 ---------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 ---------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ---------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 10000 011112222233333345678999999843211 0 112233333221 234456
Q ss_pred EEEeCCHHHHH-HhC---C-cCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 320 LITTRDRSVAL-QLG---S-IDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 320 ivTtr~~~~~~-~~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
|.||....... .+. . ...+.+...+.++-.+++...+..... .....+ .+++..+.|.-
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l----~~la~~t~g~~ 407 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-CTTCCT----HHHHHSCSSCC
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-cccchh----HHHHHhhcCcc
Confidence 66666542211 111 1 245788888888888888876532211 111222 34556666653
No 246
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.37 E-value=0.012 Score=60.96 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=55.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
.-.++.|+|.+|+||||||.+++.. ....=..++|++.....+.. .+++++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999998874 22222357898877666654 4455554321 2345666666666
Q ss_pred HHHc-CCceEEEEeCC
Q 003300 281 EYIM-GKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv 295 (832)
...+ .+.-++|+|.+
T Consensus 133 ~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHTSCCSEEEEECT
T ss_pred HHhhhcCCCeEEehHh
Confidence 5554 45668899998
No 247
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.36 E-value=0.015 Score=56.96 Aligned_cols=115 Identities=18% Similarity=0.083 Sum_probs=61.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-------------------
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS------------------- 267 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 267 (832)
-.+++|+|.+|+|||||++.++.... ..-..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 35899999999999999999886322 2223567766543 3333333322 3332110
Q ss_pred ----CCCcHHHHHHHHHHHHc-CCce--EEEEeCCCCC---CcccchhhhhhhcC--CCCCcEEEEEeCCH
Q 003300 268 ----GLSEFESLMKQIQEYIM-GKKF--FLVLDDVWDG---DYKKWDPFFSCLKN--GHHESKILITTRDR 326 (832)
Q Consensus 268 ----~~~~~~~~~~~l~~~l~-~k~~--LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 326 (832)
...+..++...+.+.+. .+.- +||+|..... +......+...+.. ...|.-||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555555555443 2333 9999998421 22223333333322 12466788888764
No 248
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.26 E-value=0.04 Score=55.29 Aligned_cols=127 Identities=17% Similarity=0.106 Sum_probs=68.7
Q ss_pred EEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCce
Q 003300 210 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI-MGKKF 288 (832)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~ 288 (832)
+.++|.+|.||||||+.++.. ... ..+++....-.+ ......+..+..+.+.. ...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~----------------~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLN----------------MYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCS----------------STTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHh----------------hhhhHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999973 221 244444322110 00001111222232222 34578
Q ss_pred EEEEeCCCCCCc-------cc----chhhhhhhcCC--CCCcEEEEEeCCHHHHHH--h---CCcCeeeCCCCChHHHHH
Q 003300 289 FLVLDDVWDGDY-------KK----WDPFFSCLKNG--HHESKILITTRDRSVALQ--L---GSIDIIPVKELGEGECCL 350 (832)
Q Consensus 289 LlVlDdv~~~~~-------~~----~~~l~~~l~~~--~~gs~iivTtr~~~~~~~--~---~~~~~~~l~~L~~~~~~~ 350 (832)
++++|+++.... .. ...+...+..+ ....-++.+|..+.+... . .-...+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999954210 01 11222223221 223445667776644322 1 224578899999999899
Q ss_pred HHHHHhh
Q 003300 351 LFKQIAF 357 (832)
Q Consensus 351 lf~~~~~ 357 (832)
++.....
T Consensus 186 il~~~~~ 192 (274)
T 2x8a_A 186 ILKTITK 192 (274)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9987653
No 249
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.15 E-value=0.021 Score=57.46 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=53.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHH-HHHHHHH
Q 003300 209 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESL-MKQIQEY 282 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 282 (832)
++-|.|.+|+||||||.+++.....+..=..++||+....++.. .+++++.... ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999998887632221112468999988877753 2667776432 12355555 4333332
Q ss_pred --H-cCCceEEEEeCC
Q 003300 283 --I-MGKKFFLVLDDV 295 (832)
Q Consensus 283 --l-~~k~~LlVlDdv 295 (832)
+ .++.-+||+|-+
T Consensus 105 ~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 105 DAIERGEKVVVFIDSL 120 (333)
T ss_dssp HTCCTTCCEEEEEECS
T ss_pred HHhhccCceEEEEecc
Confidence 2 356779999988
No 250
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.03 E-value=0.038 Score=57.56 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=54.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhc----cCCeeEEEEeCCCccHHHHHHHHHHHhCCCC------------CCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEGIRVAKAIIEGLGVSA------------SGL 269 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 269 (832)
.-.++.|+|.+|+||||||.+++....... .-..++|++....++.+.+.. ++..++... ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 567999999999999999998876321111 224689999888777665543 344554321 111
Q ss_pred CcHHHHHHHHHHHHc---CCceEEEEeCC
Q 003300 270 SEFESLMKQIQEYIM---GKKFFLVLDDV 295 (832)
Q Consensus 270 ~~~~~~~~~l~~~l~---~k~~LlVlDdv 295 (832)
.+..++...+.+.++ .+.-+||+|.+
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 222233334444443 44557788877
No 251
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.96 E-value=0.011 Score=55.16 Aligned_cols=118 Identities=16% Similarity=0.046 Sum_probs=63.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC---CccHHHHHHHHHH---HhCCCC-CCCC-------cHH
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD---TFEGIRVAKAIIE---GLGVSA-SGLS-------EFE 273 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~---~l~~~~-~~~~-------~~~ 273 (832)
..|.|++-.|.||||.|-..+- +..++=..+.++.+.+ ......++..+.- ..+..- .... ..+
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566777777999999977765 3333333566665543 2333444433310 000000 0011 112
Q ss_pred HHHHHHHHHHcCCc-eEEEEeCCCC---CCcccchhhhhhhcCCCCCcEEEEEeCCHH
Q 003300 274 SLMKQIQEYIMGKK-FFLVLDDVWD---GDYKKWDPFFSCLKNGHHESKILITTRDRS 327 (832)
Q Consensus 274 ~~~~~l~~~l~~k~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 327 (832)
.......+.+.+.+ =|||||++-. -..-..+.+...+........||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 22333445555444 4999999821 122344556666665556778999999853
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.93 E-value=0.024 Score=58.63 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=54.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhcc----CCeeEEEEeCCCccHHHHHHHHHHHhCCCCC---------CCCcH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS---------GLSEF 272 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 272 (832)
.-.++.|+|.+|+||||||.+++........ -..++|++....++.+.+.. +++.++.... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 3458999999999999999888763211110 24689999888776665543 3455544210 11122
Q ss_pred H---HHHHHHHHHHc--CCceEEEEeCC
Q 003300 273 E---SLMKQIQEYIM--GKKFFLVLDDV 295 (832)
Q Consensus 273 ~---~~~~~l~~~l~--~k~~LlVlDdv 295 (832)
+ ++...+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23444444443 35567888877
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.89 E-value=0.018 Score=56.72 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=52.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhc----cCCeeEEEEeCCCccHHHHHHHHHHHhCCCC---------CCCCcH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEGIRVAKAIIEGLGVSA---------SGLSEF 272 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 272 (832)
.-.++.|+|.+|+|||||+..++....... .-..++|++....+....+. .+++.++... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 345899999999999999998886311111 13578898877655544332 3344444321 011122
Q ss_pred HH---HHHHHHHHHc-CCceEEEEeCCC
Q 003300 273 ES---LMKQIQEYIM-GKKFFLVLDDVW 296 (832)
Q Consensus 273 ~~---~~~~l~~~l~-~k~~LlVlDdv~ 296 (832)
++ ....+.+.+. .+.-+||+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 2333444443 467788999883
No 254
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.87 E-value=0.016 Score=59.93 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=40.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhc---------cC-----CeeEEEEeCCCccHHHHHHHHHHHhCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKR---------NF-----EKVIWVCVSDTFEGIRVAKAIIEGLGV 264 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 264 (832)
.-.++.|+|.+|+|||+||.+++....... .. ..++|++....++.+.+.. +++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 457899999999999999988875321111 11 4689999888777666553 3455544
No 255
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.85 E-value=0.035 Score=58.03 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=54.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHHH
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQE 281 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 281 (832)
..++.|.|.+|+||||||.+++.. ....-..++|++....++.. .++.++.... ...+.+++.+.+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 457889999999999999888763 22222468999988766643 2445554311 22356666666666
Q ss_pred HHc-CCceEEEEeCC
Q 003300 282 YIM-GKKFFLVLDDV 295 (832)
Q Consensus 282 ~l~-~k~~LlVlDdv 295 (832)
..+ .+.-+||+|.+
T Consensus 147 l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHTTTCCSEEEEECT
T ss_pred HHhcCCCCEEEEeCh
Confidence 654 34568999998
No 256
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.80 E-value=0.1 Score=55.23 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=15.5
Q ss_pred cCCCCccceeeecccccccCCCC-CCCCCCCcCeEEE
Q 003300 764 ISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLTI 799 (832)
Q Consensus 764 ~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l 799 (832)
+..+++|+.+.|.+ .++.++. .+.+|++|+.+.+
T Consensus 306 F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 306 FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 44445555555532 1444433 2344555555554
No 257
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.76 E-value=0.029 Score=56.58 Aligned_cols=178 Identities=14% Similarity=0.095 Sum_probs=88.7
Q ss_pred CCceecchhhHHHHHHHHhccCC-------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccH
Q 003300 179 EGEVCGRVDEKNELLSKLLCESG-------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEG 251 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 251 (832)
-.+++|.++.++++.+....-.. +..-. +-+.|+|..|+||||||+.++.. .. ...+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~-~gvll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-CEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH-----
Confidence 34688988776666544322110 00011 22899999999999999999973 22 223333321
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCCC--C--------cccc----hhhhhhhcCCC--
Q 003300 252 IRVAKAIIEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWDG--D--------YKKW----DPFFSCLKNGH-- 314 (832)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~--------~~~~----~~l~~~l~~~~-- 314 (832)
++. ... ..........+.+.. ...+.++++|++... . ...+ ..+...+..+.
T Consensus 108 -~~~----~~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 -DFV----EMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp -HHH----HST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred -HHH----HHH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 111 100 001111122222222 345689999998421 0 0111 12222222221
Q ss_pred CCcEEEEEeCCHHHHHH--h---CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 315 HESKILITTRDRSVALQ--L---GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 315 ~gs~iivTtr~~~~~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
....++.||..+..... . .-...+.+...+.++-.+++...+... ....... ...++..+.|+.
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccC----HHHHHHHcCCCC
Confidence 22334556665433211 1 224578899999988888888765321 1111111 345777888765
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.75 E-value=0.038 Score=57.48 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=54.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
.-+++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3468999999999999999988863 22222468999887766543 2445554321 1234566555555
Q ss_pred HHHc-CCceEEEEeCC
Q 003300 281 EYIM-GKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv 295 (832)
...+ .+.-+||+|.+
T Consensus 133 ~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSV 148 (349)
T ss_dssp HHHTTTCCSEEEEECG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 5543 34668999988
No 259
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.69 E-value=0.029 Score=61.15 Aligned_cols=176 Identities=15% Similarity=0.088 Sum_probs=90.7
Q ss_pred CCceecchhhHHHHHHHHh---ccCCC---CCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 179 EGEVCGRVDEKNELLSKLL---CESGE---QQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 179 ~~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
-.+++|.++.++++.+... ....- ...-.+-+.|+|.+|+|||+||+.++.. .. ...+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH--
Confidence 3568999877666655433 21100 0011223899999999999999999973 22 2234444332110
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc----CCceEEEEeCCCCCCc----------ccc----hhhhhhhcCC-
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYIM----GKKFFLVLDDVWDGDY----------KKW----DPFFSCLKNG- 313 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~~----------~~~----~~l~~~l~~~- 313 (832)
. .... ....+...++ ..+.++++|+++.-.. +.+ ..+...+...
T Consensus 103 ------------~--~~g~---~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------M--FVGV---GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------S--CTTH---HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------h--hhhh---HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 0 0001 1122222332 2357999999953211 111 2222222221
Q ss_pred -CCCcEEEEEeCCHHHHHH-h----CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 314 -HHESKILITTRDRSVALQ-L----GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 314 -~~gs~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
..+..|+.||..+..... + .-...+.+...+.++-.+++..++-.. ...+... ...++..+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 234456666666654221 1 113478899889988888887664221 1111112 346777788865
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.65 E-value=0.03 Score=56.83 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=47.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
..++++|+|.+|+||||++..++........ ..+..+.... .....+.+....+..+.+.....+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3468999999999999999988863221111 2455665432 2233333444444444432222333344333432 3
Q ss_pred CCceEEEEeCC
Q 003300 285 GKKFFLVLDDV 295 (832)
Q Consensus 285 ~k~~LlVlDdv 295 (832)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34457888943
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.63 E-value=0.032 Score=58.12 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=52.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
.-+++.|.|.+|+||||||.+++... ...-..++|++....++.. .+..++.... ...+.+++.+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34589999999999999998888632 2222468999987766643 2445554321 1223455555554
Q ss_pred HHHc-CCceEEEEeCC
Q 003300 281 EYIM-GKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv 295 (832)
...+ .+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 4432 44568899987
No 262
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.55 E-value=0.015 Score=50.79 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=37.2
Q ss_pred CcEEecCCCcc--ccccccCCCCceeEEEeCCcCccccccc-ccCCCcccEEeccCcc
Q 003300 463 SPFRLHSNLIR--EIPKNVGKLIHLRYLNLSELGIERLPKT-LCELYNLQKLDIRRCR 517 (832)
Q Consensus 463 r~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~~~i~~lp~~-~~~l~~L~~L~L~~~~ 517 (832)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. |..+.+|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 35677777777 7776543 3577888888888877654 5667777777777765
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.50 E-value=0.015 Score=55.52 Aligned_cols=42 Identities=31% Similarity=0.329 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 185 RVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 185 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
|++.++++.+.+.... .....+++|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5566777887776532 13568999999999999999999886
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.24 E-value=0.093 Score=53.29 Aligned_cols=88 Identities=19% Similarity=0.207 Sum_probs=49.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC-ccHHHHHHHHHHHhCCCC---CCCCcHHH-HHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEGIRVAKAIIEGLGVSA---SGLSEFES-LMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l~ 280 (832)
...+++|+|.+|+||||++..++.. ....-..+.++..... ....+.+...++..+.+. ....+... ....+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 5689999999999999999988863 3222234556554321 112222334455554421 11122222 233455
Q ss_pred HHHcCCceEEEEeCC
Q 003300 281 EYIMGKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~~k~~LlVlDdv 295 (832)
..+..+.-++|+|-.
T Consensus 181 ~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 181 HALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHTTCSEEEEEEC
T ss_pred HHHhcCCCEEEEECC
Confidence 555555568889976
No 265
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.20 E-value=0.069 Score=54.39 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=27.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCC-eeEEEEeC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVS 246 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~ 246 (832)
.-.+++|.|.+|+|||||++.++..... ... .++|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc
Confidence 3458999999999999999998874222 222 46676543
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.12 E-value=0.18 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 267
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.09 E-value=0.064 Score=55.09 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=36.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEG 261 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 261 (832)
.-.++.|.|.+|+||||+|..++.+...++ ..++|++.. .+.+++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 446899999999999999988886432222 568887655 4556666666544
No 268
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.95 E-value=0.14 Score=51.62 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=43.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhc-cCCeeEEEEeCCCccHHHHHHHHHHHh------CC-CCCCCCcHHHHH
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEKVIWVCVSDTFEGIRVAKAIIEGL------GV-SASGLSEFESLM 276 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 276 (832)
....+|+|+|..|+||||||+.+.......+ ....+..|+...-+-.......+.... .. ..+...+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999998886322211 123444445544332233333443221 11 123445566665
Q ss_pred HHHHHHHcC
Q 003300 277 KQIQEYIMG 285 (832)
Q Consensus 277 ~~l~~~l~~ 285 (832)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555554433
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.89 E-value=0.085 Score=54.95 Aligned_cols=89 Identities=22% Similarity=0.304 Sum_probs=52.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccC----CeeEEEEeCCCccHHHHHHHHHHHhCCCC-----------C-CC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF----EKVIWVCVSDTFEGIRVAKAIIEGLGVSA-----------S-GL 269 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----------~-~~ 269 (832)
.-.++.|+|..|+|||||++.++......... ..++|++....+..+.+ ..++...+... . ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 56799999999999999999888632111111 24589887665443332 33444433210 0 01
Q ss_pred CcHHHHHHHHHHHHc------CCceEEEEeCC
Q 003300 270 SEFESLMKQIQEYIM------GKKFFLVLDDV 295 (832)
Q Consensus 270 ~~~~~~~~~l~~~l~------~k~~LlVlDdv 295 (832)
....++...+...+. .+.-+||+|.+
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 122334444455553 46779999988
No 270
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.88 E-value=0.21 Score=50.45 Aligned_cols=87 Identities=26% Similarity=0.252 Sum_probs=49.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC-ccHHHHHHHHHHHhCCCC---CCCCcHHHHHHHHHHH
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEGIRVAKAIIEGLGVSA---SGLSEFESLMKQIQEY 282 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 282 (832)
..+++++|.+|+||||++..++.. ....-..+.++..... ....+.+....+..+.+- ....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999888863 2222234666665422 223333444455555431 1223444444334444
Q ss_pred Hc-CCceEEEEeCC
Q 003300 283 IM-GKKFFLVLDDV 295 (832)
Q Consensus 283 l~-~k~~LlVlDdv 295 (832)
++ +..=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 44 33337888876
No 271
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.87 E-value=0.21 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 272
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.80 E-value=0.22 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.-.+++|+|..|.|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999976
No 273
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.78 E-value=0.023 Score=54.51 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=28.3
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 188 EKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 188 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
-+++|.+.+... .....+++|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555432 13567999999999999999999886
No 274
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.78 E-value=0.0045 Score=58.06 Aligned_cols=22 Identities=23% Similarity=0.010 Sum_probs=18.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.++.|+|..|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966665
No 275
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.74 E-value=0.071 Score=54.44 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=53.5
Q ss_pred eecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhcc--CCeeEEEEeCCCccHHHHHHH--
Q 003300 182 VCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSDTFEGIRVAKA-- 257 (832)
Q Consensus 182 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~-- 257 (832)
++|....+..+...+..... .....+|+|.|..|+||||+++.+..- .... -..+..++...-+-....+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~l--l~~~~~~~~v~~i~~D~f~~~~~~l~~~~ 144 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKAL--LSRWPDHPNVEVITTDGFLYSNAKLEKQG 144 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHHH--HTTSTTCCCEEEEEGGGGBCCHHHHHHTT
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHHH--hcccCCCCeEEEEeecccccchhhhhhHH
Confidence 44555556666655554321 346789999999999999999988752 2211 123555554432211111111
Q ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHHcCC
Q 003300 258 IIEGLGVSASGLSEFESLMKQIQEYIMGK 286 (832)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (832)
+....+ .+...+.+.+.+.+.....++
T Consensus 145 ~~~~~g--~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 145 LMKRKG--FPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp CGGGTT--SGGGBCHHHHHHHHHHHHTTC
T ss_pred HHhhcc--CcccccHHHHHHHHHhhhccc
Confidence 111111 233456666666666665555
No 276
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.72 E-value=0.11 Score=55.17 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=38.7
Q ss_pred ccCCcccceeeccccccccccccccccccccCCCCccceeeecccccccCCCC-CCCCCCCcCeEEEcC
Q 003300 734 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLTIWK 801 (832)
Q Consensus 734 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 801 (832)
+..+.+|+.+.+.. ++..+ ....+..+++|+.+.+.++. ++.++. .+.+|++|+.+.|..
T Consensus 259 F~~~~~l~~i~l~~--~i~~i-----~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 259 LQNCTALKTLNFYA--KVKTV-----PYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTCTTCCEEEECC--CCSEE-----CTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred cceeehhccccccc--cceec-----cccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCc
Confidence 34566777776543 23222 22456678889999886644 677665 466788899888853
No 277
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.67 E-value=1.4 Score=47.66 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=34.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAII 259 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 259 (832)
.-.++.|.|.+|+||||||..++.+.... .=..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 34589999999999999999888743222 113578876543 4455555553
No 278
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.65 E-value=0.1 Score=53.61 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=36.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEG 261 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 261 (832)
.-.++.|.|.+|+||||+|..++.+... .=..++|++. +.+.+++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 3458999999999999999988874222 2235777654 45566676666544
No 279
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.62 E-value=0.16 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 280
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.59 E-value=0.1 Score=50.63 Aligned_cols=46 Identities=26% Similarity=0.292 Sum_probs=31.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhh---hc-cCCeeEEEEeCCCccH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEV---KR-NFEKVIWVCVSDTFEG 251 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~ 251 (832)
.-.+++|+|..|+|||||++.++..... .. .-..++|+........
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4579999999999999999998752111 11 1345888876554333
No 281
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.56 E-value=0.098 Score=55.32 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=51.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhh----hccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC---------CCCcH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEV----KRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS---------GLSEF 272 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 272 (832)
.-.++.|+|.+|+|||||+..++-.... ...-..++|++....+....+ +.+++.++.... ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 3468999999999999999976521111 112346889887766555443 335555554210 11122
Q ss_pred H---HHHHHHHHHH-cCCceEEEEeCC
Q 003300 273 E---SLMKQIQEYI-MGKKFFLVLDDV 295 (832)
Q Consensus 273 ~---~~~~~l~~~l-~~k~~LlVlDdv 295 (832)
+ .....+...+ ..+.-+||+|.+
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecch
Confidence 2 2223333333 245678889987
No 282
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.48 E-value=0.12 Score=55.10 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=50.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCcc-HHHHHHHHHHHhCC--------CCCCCCcHHH----
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-GIRVAKAIIEGLGV--------SASGLSEFES---- 274 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~--------~~~~~~~~~~---- 274 (832)
+.++|+|.+|+|||||++.+..+.... .-+.++++-+++..+ ..+++..+...-.. ...+..-...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 358899999999999999998742222 224566777776654 44555555432100 0111111111
Q ss_pred HHHHHHHHH---cCCceEEEEeCC
Q 003300 275 LMKQIQEYI---MGKKFFLVLDDV 295 (832)
Q Consensus 275 ~~~~l~~~l---~~k~~LlVlDdv 295 (832)
..-.+.+++ ++++.|+++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 011233443 588999999999
No 283
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.48 E-value=0.19 Score=53.35 Aligned_cols=86 Identities=23% Similarity=0.183 Sum_probs=46.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccH--HHHHHHHHHHhCCCC---CCCCcHHHHHHHHHH
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEG--IRVAKAIIEGLGVSA---SGLSEFESLMKQIQE 281 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 281 (832)
..+++|+|.+|+||||++..++.. ....-..+..+... .+.. .+.+.......+.+. ....+...+.....+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEeecc-ccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 468999999999999999888863 33222345555543 3332 222344445555431 112233333333333
Q ss_pred HHcCCce-EEEEeCC
Q 003300 282 YIMGKKF-FLVLDDV 295 (832)
Q Consensus 282 ~l~~k~~-LlVlDdv 295 (832)
.++.+.| ++|+|-.
T Consensus 175 ~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 175 KARLEARDLILVDTA 189 (425)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHHCCCCEEEEcCC
Confidence 3432333 6777865
No 284
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.47 E-value=0.03 Score=57.85 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=52.5
Q ss_pred HHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccC-C-eeEEEEeCCCcc-HHHHHHHHHHHhCCCCC
Q 003300 191 ELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNF-E-KVIWVCVSDTFE-GIRVAKAIIEGLGVSAS 267 (832)
Q Consensus 191 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~ 267 (832)
++++.+..-. .-..++|+|.+|+|||||++.+.+. +.... + .++++-+++... +.++.+.+-..+-....
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~ata 235 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTF 235 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECT
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCC
Confidence 4445554432 3458999999999999999998873 22222 2 245666676543 23332222000000112
Q ss_pred CCCcHHHHH-----HHHHHHH--cCCceEEEEeCC
Q 003300 268 GLSEFESLM-----KQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 268 ~~~~~~~~~-----~~l~~~l--~~k~~LlVlDdv 295 (832)
+.....+.. -.+.+++ +++.+||++||+
T Consensus 236 dep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 236 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 222222111 1233444 589999999998
No 285
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.42 E-value=0.26 Score=52.42 Aligned_cols=89 Identities=21% Similarity=0.128 Sum_probs=47.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHHHhCCCCC---CCCcHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIEGLGVSAS---GLSEFESLMKQIQE 281 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 281 (832)
..++|.++|.+|+||||++..++.. .+..=..+..++... .....+.+.......+.+.. ...+...+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~--l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF--YKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 4689999999999999999888863 222222455555432 22233344444555554321 12233322222223
Q ss_pred HHc-CCceEEEEeCCC
Q 003300 282 YIM-GKKFFLVLDDVW 296 (832)
Q Consensus 282 ~l~-~k~~LlVlDdv~ 296 (832)
.+. ...=++|+|-..
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 333 344466788764
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.40 E-value=0.02 Score=53.29 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 287
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.35 E-value=0.025 Score=53.27 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
...+++|+|+.|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999873
No 288
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.33 E-value=0.18 Score=49.97 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=63.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhh-cc--C-----------CeeE-EEEeCC--CccHH--------------HHHH
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVK-RN--F-----------EKVI-WVCVSD--TFEGI--------------RVAK 256 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--f-----------~~~~-wv~~~~--~~~~~--------------~~~~ 256 (832)
.+++|+|..|.|||||.+.++.-. .. +. + ..+. ++.-.. ..++. +...
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~ 109 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL 109 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHH
Confidence 479999999999999999998631 10 00 0 0122 221110 11221 1233
Q ss_pred HHHHHhCCC-CC------CCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCCCCCcEEEEEeCCHHH
Q 003300 257 AIIEGLGVS-AS------GLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTRDRSV 328 (832)
Q Consensus 257 ~i~~~l~~~-~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~ 328 (832)
++++.++.. .. .....+...-.+.+.+-.++-++++|+--.. +...-..+...+..... -||++|.+...
T Consensus 110 ~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~ 187 (263)
T 2pjz_A 110 EMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDM 187 (263)
T ss_dssp HHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGG
T ss_pred HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHH
Confidence 455555554 21 1122233333455666677889999987331 22222334444433222 58888988665
Q ss_pred HHH
Q 003300 329 ALQ 331 (832)
Q Consensus 329 ~~~ 331 (832)
+..
T Consensus 188 ~~~ 190 (263)
T 2pjz_A 188 LNL 190 (263)
T ss_dssp GGG
T ss_pred HHH
Confidence 443
No 289
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.18 E-value=0.24 Score=48.58 Aligned_cols=39 Identities=31% Similarity=0.262 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 247 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 247 (832)
-.++.|.|.+|+||||||.+++.. ....=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 358999999999999999877653 222224688877554
No 290
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.15 E-value=0.024 Score=52.51 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=18.6
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 003300 208 YVISLVGLGGIGKTTLAQLA 227 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v 227 (832)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 291
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.07 E-value=0.5 Score=51.43 Aligned_cols=55 Identities=27% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCCC---CCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe
Q 003300 189 KNELLSKLLCESGEQ---QQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 245 (832)
Q Consensus 189 ~~~l~~~L~~~~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 245 (832)
.+++.+.+....... ....++|+|+|.+|+||||++..++.. ....=..+..|+.
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~--l~~~G~kVllVd~ 137 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY--YQRKGWKTCLICA 137 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEE
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEec
Confidence 345555554322111 135789999999999999999888863 2222123555554
No 292
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.06 E-value=0.024 Score=53.94 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.++|.|+|+.|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.05 E-value=0.026 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.110 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.05 E-value=0.033 Score=53.02 Aligned_cols=24 Identities=42% Similarity=0.423 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|+|++|.||||+|+.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 295
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.04 E-value=0.034 Score=58.67 Aligned_cols=49 Identities=29% Similarity=0.279 Sum_probs=35.1
Q ss_pred ceecchhhHHHHHHHHhcc----C-----CCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 181 EVCGRVDEKNELLSKLLCE----S-----GEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 181 ~~vGr~~~~~~l~~~L~~~----~-----~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.++|.+..++.+...+... . .......+.+.++|.+|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3688888888888777310 0 00011345689999999999999999997
No 296
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.98 E-value=0.029 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999985
No 297
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.95 E-value=0.27 Score=52.65 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=28.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhcc-CCeeEEEEeC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVS 246 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~ 246 (832)
..++|.++|.+|+||||++..++.. .... =..+..|++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecC
Confidence 5689999999999999999888763 3322 2345556554
No 298
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.95 E-value=0.23 Score=50.30 Aligned_cols=87 Identities=21% Similarity=0.153 Sum_probs=47.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCcc-HHHHHHHHHHHhCCCCC---CCCcHHHHHH-HHHH
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-GIRVAKAIIEGLGVSAS---GLSEFESLMK-QIQE 281 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~~~-~l~~ 281 (832)
.++++|+|.+|+||||++..++.. ....-..+.++....... ....+....+..+.... ...+...+.. .+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999988863 222223455655432221 11223334454444311 1223333333 3333
Q ss_pred HHcCCceEEEEeCC
Q 003300 282 YIMGKKFFLVLDDV 295 (832)
Q Consensus 282 ~l~~k~~LlVlDdv 295 (832)
....+.=++|+|-.
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 33344557888976
No 299
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.87 E-value=0.051 Score=55.81 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=31.7
Q ss_pred ecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 183 CGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 183 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
|+.+.-.+++.+.+...-. .+....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3444556666666643221 23567799999999999999999987
No 300
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.78 E-value=0.29 Score=50.11 Aligned_cols=39 Identities=31% Similarity=0.275 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 246 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 246 (832)
..++++|+|.+|+||||++..++.. ....-..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~--l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY--YAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCC
Confidence 5689999999999999999888863 33222345665543
No 301
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.75 E-value=0.03 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999886
No 302
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.72 E-value=0.064 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999985
No 303
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.69 E-value=0.03 Score=52.49 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+.|.|+|+.|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 304
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.68 E-value=0.07 Score=54.54 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 247 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 247 (832)
++.+||+|.|-|||||||.|-.++. .....=..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 3679999999999999999976654 2222223577777663
No 305
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.67 E-value=0.3 Score=50.63 Aligned_cols=128 Identities=15% Similarity=0.144 Sum_probs=68.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhh-------c------------c-CCeeEEEEeC----CCccHH---------
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVK-------R------------N-FEKVIWVCVS----DTFEGI--------- 252 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------~------------~-f~~~~wv~~~----~~~~~~--------- 252 (832)
.-.+++|+|..|.|||||.+.+..-.+.. + . -..+.+|.-. ...++.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence 34589999999999999999997631100 0 0 0123333211 111111
Q ss_pred ---------HHHHHHHHHhCCCC-----CCC-CcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC--CC
Q 003300 253 ---------RVAKAIIEGLGVSA-----SGL-SEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN--GH 314 (832)
Q Consensus 253 ---------~~~~~i~~~l~~~~-----~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~ 314 (832)
+...++++.++... ... .-.+...-.|.+.|..++-+|++|.--.. +...-..+...+.. ..
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 12334455555431 111 22333344566778888889999987331 22222233333332 12
Q ss_pred CCcEEEEEeCCHHHHHHhC
Q 003300 315 HESKILITTRDRSVALQLG 333 (832)
Q Consensus 315 ~gs~iivTtr~~~~~~~~~ 333 (832)
.|.-||++|.+-..+..+.
T Consensus 213 ~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 213 LGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp SCCEEEEEESCHHHHHHHC
T ss_pred CCCEEEEEecCHHHHHHhC
Confidence 3667999999987776543
No 306
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.66 E-value=0.029 Score=51.81 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|+|+|+.|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999986
No 307
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.65 E-value=0.091 Score=45.74 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=42.0
Q ss_pred eEEEeCCcCcc--cccccccCCCcccEEeccCccCccccCc-ccccccCCceeecCCcc
Q 003300 486 RYLNLSELGIE--RLPKTLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNGETY 541 (832)
Q Consensus 486 ~~L~Ls~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~~~ 541 (832)
..++.++++++ .+|..+. .+|++|+|++|. +..+|. .|..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888999988 8887654 479999999987 555654 57889999999999884
No 308
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.64 E-value=0.4 Score=49.16 Aligned_cols=24 Identities=46% Similarity=0.562 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|..|+||||+++.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999886
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.55 E-value=0.043 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.50 E-value=0.048 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999886
No 311
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.49 E-value=0.041 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 312
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.45 E-value=0.044 Score=54.37 Aligned_cols=177 Identities=14% Similarity=0.104 Sum_probs=87.9
Q ss_pred CceecchhhHHHHHHHHhccCC-------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG-------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.+++|.++.+.++.+....-.. +..-. +-+.|+|.+|+||||||+.++.. .. ...+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~g~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-SEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH------
Confidence 4688887666655543321100 00011 22899999999999999999973 22 223333221
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-cCCceEEEEeCCCCCC----------ccc----chhhhhhhcCCC--C
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQEYI-MGKKFFLVLDDVWDGD----------YKK----WDPFFSCLKNGH--H 315 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~~~--~ 315 (832)
++. ... ..........+.+.. .....++++|+++... ... ...+...+..+. .
T Consensus 84 ~~~----~~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 84 DFV----EMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp HHH----HSC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred HHH----HHH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 111 100 011111222233333 2456899999983210 011 122322332221 2
Q ss_pred CcEEEEEeCCHHHHHH-h----CCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCCh
Q 003300 316 ESKILITTRDRSVALQ-L----GSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGLP 383 (832)
Q Consensus 316 gs~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 383 (832)
..-++.||..+..... . .-...+.+...+.++-.+++...+... ....... ...+++.+.|+-
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC-CCCcccC----HHHHHHHcCCCC
Confidence 2344556666544321 1 123478899889888888887665321 1111112 346777787764
No 313
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.36 E-value=0.041 Score=50.74 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=20.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|..|.|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997553
No 314
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.31 E-value=0.04 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|+.|+||||+++.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 315
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.29 E-value=0.05 Score=52.18 Aligned_cols=24 Identities=42% Similarity=0.443 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 316
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.29 E-value=0.067 Score=52.99 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=28.2
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 189 KNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.++++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 234567899999999999999999986
No 317
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.28 E-value=0.09 Score=49.18 Aligned_cols=25 Identities=40% Similarity=0.380 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
...+|.|.|++|+||||+++.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 318
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.27 E-value=0.39 Score=49.69 Aligned_cols=126 Identities=15% Similarity=0.171 Sum_probs=66.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhh-c--------------cCCeeEEEEeC----CCccH-----------------
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVK-R--------------NFEKVIWVCVS----DTFEG----------------- 251 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--------------~f~~~~wv~~~----~~~~~----------------- 251 (832)
.+++|+|..|.|||||.+.++.-.... + .-..+.+|.-. ...++
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE 121 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 589999999999999999998631100 0 00123333211 11111
Q ss_pred -HHHHHHHHHHhCCCCC------CCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCC--CCCcEEEE
Q 003300 252 -IRVAKAIIEGLGVSAS------GLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILI 321 (832)
Q Consensus 252 -~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iiv 321 (832)
.+-..++++.++.... .....++..-.|.+.|-.++-+|++|+--.. |...-..+...+..- ..|.-||+
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1223345555554311 1122333344566777778889999986321 212222233333221 12556999
Q ss_pred EeCCHHHHHHhC
Q 003300 322 TTRDRSVALQLG 333 (832)
Q Consensus 322 Ttr~~~~~~~~~ 333 (832)
+|.+...+..+.
T Consensus 202 vTHd~~~a~~~a 213 (355)
T 1z47_A 202 VTHDQEEALEVA 213 (355)
T ss_dssp ECSCHHHHHHHC
T ss_pred ECCCHHHHHHhC
Confidence 999987766544
No 319
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.25 E-value=0.034 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
|.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999998875
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.23 E-value=0.062 Score=51.32 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|+|..|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999999999886
No 321
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.23 E-value=0.049 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999974
No 322
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.21 E-value=0.46 Score=50.62 Aligned_cols=99 Identities=22% Similarity=0.230 Sum_probs=60.7
Q ss_pred HHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc-cHHHHHHHHHHHhCCC----
Q 003300 191 ELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EGIRVAKAIIEGLGVS---- 265 (832)
Q Consensus 191 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---- 265 (832)
+.++.|..-. .-..++|.|.+|+|||+|+.++.++. .+.+-+.++++-+++.. .+.++.+.+...-...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 4455554332 34579999999999999999988731 12234667888787765 4567777776542221
Q ss_pred ---------CCCCCcHHHH-----HHHHHHHH---cCCceEEEEeCC
Q 003300 266 ---------ASGLSEFESL-----MKQIQEYI---MGKKFFLVLDDV 295 (832)
Q Consensus 266 ---------~~~~~~~~~~-----~~~l~~~l---~~k~~LlVlDdv 295 (832)
..+.....+. .-.+.+++ +++.+||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1112211111 12234444 478999999998
No 323
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.19 E-value=0.053 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|+|..|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999986
No 324
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.17 E-value=0.036 Score=58.12 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=32.2
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 458999886665544443321 12388999999999999999987
No 325
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.15 E-value=0.037 Score=52.68 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|+|.|..|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 326
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.15 E-value=0.048 Score=52.19 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999863
No 327
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.14 E-value=0.041 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|.|+.|+||||+|+.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 328
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.11 E-value=0.048 Score=54.00 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+++.|.|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 329
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.06 E-value=0.037 Score=51.54 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.++|.|+|++|+||||+|+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 330
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.06 E-value=0.047 Score=51.32 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 331
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.04 E-value=0.15 Score=55.52 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.+.|.|.+|+|||+++.++...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999888873
No 332
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.03 E-value=0.087 Score=48.02 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999887
No 333
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.00 E-value=0.048 Score=56.75 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=59.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccH--HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEG--IRVAKAIIEGLGVSASGLSEFESLMKQIQEYIM 284 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (832)
..+++|+|..|.||||+.+.+... ........++ .+.+.... ... ...+.+.... .... .....+.+.|.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~~~~~-~~~v~q~~~~-~~~~---~~~~~La~aL~ 194 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFVHESK-KCLVNQREVH-RDTL---GFSEALRSALR 194 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSCCCCS-SSEEEEEEBT-TTBS---CHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhhhhcc-ccceeeeeec-cccC---CHHHHHHHHhh
Confidence 359999999999999999988762 2222222222 22221110 000 0000000000 0111 23347788888
Q ss_pred CCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHH
Q 003300 285 GKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVA 329 (832)
Q Consensus 285 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~ 329 (832)
..+=+|++|+.- +.+.++.+..... .|.-||+|+......
T Consensus 195 ~~PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 888899999994 3344544444322 355689999876554
No 334
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.00 E-value=0.051 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+++|+|..|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999886
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.99 E-value=0.059 Score=51.27 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|.|+.|+||||+|+.++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999885
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.99 E-value=0.14 Score=48.91 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 337
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.96 E-value=0.48 Score=49.17 Aligned_cols=127 Identities=18% Similarity=0.088 Sum_probs=67.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhh---------------ccCCeeEEEEeC----CCccHH---------------
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVK---------------RNFEKVIWVCVS----DTFEGI--------------- 252 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------~~f~~~~wv~~~----~~~~~~--------------- 252 (832)
-.+++|+|..|.|||||.+.++.-.... ..-..+.+|.-. ...++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE 108 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 3589999999999999999998631100 000123333211 111111
Q ss_pred ---HHHHHHHHHhCCCCCC------CCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCC--CCCcEEE
Q 003300 253 ---RVAKAIIEGLGVSASG------LSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKIL 320 (832)
Q Consensus 253 ---~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ii 320 (832)
+-..++++.++..... ....++..-.|.+.|-.++-++++|+--.. |...-..+...+..- ..|.-||
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 188 (362)
T 2it1_A 109 EIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188 (362)
T ss_dssp HHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 1233455556553211 122333344566777788889999986221 212222233333221 1255689
Q ss_pred EEeCCHHHHHHhC
Q 003300 321 ITTRDRSVALQLG 333 (832)
Q Consensus 321 vTtr~~~~~~~~~ 333 (832)
++|.+...+..+.
T Consensus 189 ~vTHd~~~a~~~a 201 (362)
T 2it1_A 189 YVTHDQAEALAMA 201 (362)
T ss_dssp EEESCHHHHHHHC
T ss_pred EECCCHHHHHHhC
Confidence 9999987665544
No 338
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.92 E-value=0.055 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 339
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.89 E-value=0.055 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
....|+|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999986
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.88 E-value=0.04 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
++++|+|..|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 341
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.88 E-value=0.042 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..++|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 342
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.88 E-value=0.053 Score=51.65 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|+|+|..|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999885
No 343
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.84 E-value=0.48 Score=54.56 Aligned_cols=177 Identities=14% Similarity=0.053 Sum_probs=77.4
Q ss_pred CceecchhhHHHHHHHHhccCC-------CCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHH
Q 003300 180 GEVCGRVDEKNELLSKLLCESG-------EQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 252 (832)
.++.|.++.++++.+.+.-+-. ......+-+.++|++|.|||.+|+++++. ... -++.++ ..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~-----~f~~v~----~~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----GP 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTC-----EEEECC----HH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCC-----ceEEec----cc
Confidence 4577888777777766543211 01223456789999999999999999984 221 222222 11
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHcCCceEEEEeCCCCCC----------ccc----chhhhhhhcCC--CC
Q 003300 253 RVAKAIIEGLGVSASGLSEFESLMKQIQE-YIMGKKFFLVLDDVWDGD----------YKK----WDPFFSCLKNG--HH 315 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~~--~~ 315 (832)
+ ++... -..... .+..+.+ .-+..+.+|++|+++.-- ... ...|...+... ..
T Consensus 546 ~----l~s~~-----vGese~-~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 546 E----LLTMW-----FGESEA-NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp H----HHTTT-----CSSCHH-HHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred h----hhccc-----cchHHH-HHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 1 11111 111222 3333333 334678999999985310 001 12233333321 22
Q ss_pred CcEEEEEeCCHHH-----HHHhCCcCeeeCCCCChHHHHHHHHHHhhccCCCCCccchHHHHHHHHHHcCCC
Q 003300 316 ESKILITTRDRSV-----ALQLGSIDIIPVKELGEGECCLLFKQIAFLRRSFEDREKLEPMGRKIAHKCKGL 382 (832)
Q Consensus 316 gs~iivTtr~~~~-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 382 (832)
+.-||-||..+.. ...-.-...+.+...+.++-.++|+.+.-.. ......+ ...+++.+.|+
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~-~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-PVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC---CCC-----------------
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC-CCCCCCC----HHHHHHhCCCC
Confidence 3233335543322 1111225577887777777677776654221 1111122 24566666664
No 344
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.78 E-value=0.55 Score=50.54 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=29.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCcc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 250 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 250 (832)
...+++|+|.+|+|||||++.++.. .. .....+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 5679999999999999999998863 22 223455554444443
No 345
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.77 E-value=0.063 Score=51.24 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 346
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.74 E-value=0.055 Score=51.49 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999986
No 347
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.72 E-value=0.061 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|+|.|..|+||||+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.69 E-value=0.062 Score=53.49 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 349
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.68 E-value=0.062 Score=53.21 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|.|..|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999886
No 350
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.68 E-value=0.054 Score=50.12 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|.|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 351
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.68 E-value=0.059 Score=51.44 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 352
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.65 E-value=0.1 Score=50.54 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999988863
No 353
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.64 E-value=0.06 Score=55.50 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=53.3
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCC-eeEEEEeCCCccH-HHHHHHHHHHhCCCCC
Q 003300 190 NELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEG-IRVAKAIIEGLGVSAS 267 (832)
Q Consensus 190 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~~i~~~l~~~~~ 267 (832)
-++++.+..-. .-..++|+|.+|+|||+|+.++++..... +=+ .++++-+++.... .++.+.+...+-....
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~ata 236 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDERPEEVTDIRESTNAIVIAAPF 236 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCT
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccCcchHHHHHHHhCCeEEEECC
Confidence 35666665432 34578999999999999999998742211 123 2456666654322 1111111101111122
Q ss_pred CCCcHHHH-----HHHHHHHH--cCCceEEEEeCC
Q 003300 268 GLSEFESL-----MKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 268 ~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 295 (832)
+.....+. .-.+.+++ +++.+||++||+
T Consensus 237 dep~~~r~~~a~~altiAEyfrd~G~dVLil~Dsl 271 (427)
T 3l0o_A 237 DMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSL 271 (427)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 22222211 11233444 589999999998
No 354
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.63 E-value=0.31 Score=52.18 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=57.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCc-cHHHHHHHHHHHhCCC--------------CCCCC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EGIRVAKAIIEGLGVS--------------ASGLS 270 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------------~~~~~ 270 (832)
.-..++|.|-+|+|||+|+.++.++. .+.+-+.++++-+++.. ...++.+.+...-... ..+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 34568999999999999999888731 12244678888888766 4567777776542221 11111
Q ss_pred c-----HHHHHHHHHHHHc---CCceEEEEeCC
Q 003300 271 E-----FESLMKQIQEYIM---GKKFFLVLDDV 295 (832)
Q Consensus 271 ~-----~~~~~~~l~~~l~---~k~~LlVlDdv 295 (832)
. .....-.+.++++ ++.+|+++||+
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1 1122233456664 58999999998
No 355
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.59 E-value=0.071 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...|+|.|+.|+||||+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 356
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.59 E-value=0.059 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|+|.|+.|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 357
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.55 E-value=0.1 Score=50.30 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 185 RVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 185 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.++..+++...+... ..++++|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455555554322 5689999999999999999888863
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.52 E-value=0.1 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
....|.|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
No 359
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.51 E-value=0.08 Score=49.73 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
....+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999886
No 360
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.50 E-value=0.073 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 567999999999999999999886
No 361
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.50 E-value=0.061 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|+|+|..|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 362
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.47 E-value=0.084 Score=47.74 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.-.+++|+|..|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999986
No 363
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.40 E-value=0.051 Score=50.79 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 364
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.37 E-value=0.052 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998875
No 365
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.37 E-value=0.2 Score=47.91 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|+|.|..|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 366
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.34 E-value=0.069 Score=50.13 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999885
No 367
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.33 E-value=0.24 Score=46.52 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 368
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.33 E-value=0.05 Score=50.16 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 369
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.33 E-value=0.66 Score=50.08 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=36.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEG 261 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 261 (832)
...++.|.|.+|+||||+|..++.+.... .=..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 34589999999999999999888742221 12357787654 4556666666543
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.29 E-value=0.077 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|.|..|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.26 E-value=0.23 Score=46.72 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|+|.|..|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 372
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.25 E-value=0.071 Score=48.86 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 373
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.23 E-value=0.073 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|+|.|..|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 374
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.21 E-value=0.073 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|.|.|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999986
No 375
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.16 E-value=0.077 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.-.+++|+|..|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999999886
No 376
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.13 E-value=0.092 Score=49.14 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=27.5
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 188 EKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 188 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
-+..+..++... .....+.|+|++|+||||+|..+++
T Consensus 44 f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 44 FLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHH
Confidence 355666666432 1344699999999999999998887
No 377
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.12 E-value=0.088 Score=51.85 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998876
No 378
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.12 E-value=0.075 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+++|+|+.|+||||+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 379
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.01 E-value=0.31 Score=61.45 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=55.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
..+.+.|+|++|+|||+||.++.... ..+=..++|+++...++... ++.++.... .....++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45789999999999999999988742 22224688888887776655 445553211 1223345555555
Q ss_pred HHHc-CCceEEEEeCCC
Q 003300 281 EYIM-GKKFFLVLDDVW 296 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv~ 296 (832)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 567799999983
No 380
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.91 E-value=0.1 Score=52.54 Aligned_cols=23 Identities=48% Similarity=0.837 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAY 228 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~ 228 (832)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999999987
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.90 E-value=0.094 Score=48.68 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999986
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.89 E-value=0.083 Score=52.25 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 383
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.88 E-value=0.72 Score=47.78 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=68.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhh------------hc--------cCCeeEEEEeCC----CccH-----------
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEV------------KR--------NFEKVIWVCVSD----TFEG----------- 251 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~------------~~--------~f~~~~wv~~~~----~~~~----------- 251 (832)
-.+++|+|..|.|||||.+.++.-... .. .-..+.+|.-.. ..++
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 110 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM 110 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999863110 00 001233332110 1111
Q ss_pred -------HHHHHHHHHHhCCCCC------CCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCC--CC
Q 003300 252 -------IRVAKAIIEGLGVSAS------GLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNG--HH 315 (832)
Q Consensus 252 -------~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~ 315 (832)
.+-..++++.++.... .....++..-.|.+.|-.++-++++|+--.. +...-..+...+..- ..
T Consensus 111 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 190 (353)
T 1oxx_K 111 KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190 (353)
T ss_dssp SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 1233455666655321 1122333344566777788889999986331 222222333333221 12
Q ss_pred CcEEEEEeCCHHHHHHhC
Q 003300 316 ESKILITTRDRSVALQLG 333 (832)
Q Consensus 316 gs~iivTtr~~~~~~~~~ 333 (832)
|.-||++|.+...+..+.
T Consensus 191 g~tvi~vTHd~~~~~~~a 208 (353)
T 1oxx_K 191 GVTLLVVSHDPADIFAIA 208 (353)
T ss_dssp CCEEEEEESCHHHHHHHC
T ss_pred CCEEEEEeCCHHHHHHhC
Confidence 556899999987765544
No 384
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.86 E-value=0.59 Score=51.48 Aligned_cols=53 Identities=17% Similarity=0.013 Sum_probs=36.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEG 261 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 261 (832)
.-.++.|.|.+|+||||+|.+++.+...+ +=..++|++... +.+++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 44688999999999999998888642221 123578876543 456676666543
No 385
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.74 E-value=0.071 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999886
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.74 E-value=0.12 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...++|.|.|.+|+||||.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999886
No 387
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.72 E-value=0.086 Score=50.72 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999886
No 388
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.70 E-value=0.087 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|.+|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999886
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.69 E-value=0.06 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=16.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 390
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.69 E-value=0.38 Score=45.27 Aligned_cols=49 Identities=27% Similarity=0.261 Sum_probs=31.2
Q ss_pred EEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHH
Q 003300 210 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIE 260 (832)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 260 (832)
|+|=|.-|+||||.++.++. ..+..-..+++..-.......+..+.++.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 67889999999999999987 34333334555544333344444555443
No 391
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.67 E-value=0.31 Score=50.92 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=27.6
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 189 KNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..++.+.+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555554332 3678999999999999999988875
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.62 E-value=0.2 Score=51.19 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999999886
No 393
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.53 E-value=0.087 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...|.|.|+.|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.42 E-value=0.11 Score=49.62 Aligned_cols=24 Identities=38% Similarity=0.310 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999986
No 395
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.41 E-value=0.064 Score=49.29 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988863
No 396
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.41 E-value=0.1 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|+|.|..|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 397
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.33 E-value=0.1 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...|.|.|+.|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 398
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.33 E-value=0.26 Score=50.78 Aligned_cols=105 Identities=16% Similarity=0.133 Sum_probs=54.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHcCCc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIMGKK 287 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 287 (832)
.+++|+|..|.|||||++.+..- . ..-...+.+.-......... + ..++.-..+. ......+.+.+..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~-~~~~g~i~i~~~~e~~~~~~-~---~~i~~~~ggg---~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--I-PKEERIISIEDTEEIVFKHH-K---NYTQLFFGGN---ITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--S-CTTSCEEEEESSCCCCCSSC-S---SEEEEECBTT---BCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-cCCCcEEEECCeeccccccc-h---hEEEEEeCCC---hhHHHHHHHHhhhCC
Confidence 47999999999999999999863 2 22244555542221110000 0 0000000011 122345666777788
Q ss_pred eEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH
Q 003300 288 FFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS 327 (832)
Q Consensus 288 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 327 (832)
=+|++|+.-. .+.++.+ ..+..+ +.-+|+||....
T Consensus 242 ~ilildE~~~--~e~~~~l-~~~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRS--SEAYDFY-NVLCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCS--THHHHHH-HHHHTT--CCCEEEEEECSS
T ss_pred CEEEEcCCCh--HHHHHHH-HHHhcC--CCEEEEEEcccH
Confidence 8999999843 2334333 333322 112677776544
No 399
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.15 Score=47.73 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988864
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.23 E-value=0.059 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999886
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.18 E-value=0.13 Score=49.63 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 402
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.17 E-value=0.21 Score=51.00 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=29.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCC
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 248 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 248 (832)
...++|+|+|-||+||||+|..++.. ....=..++-|++...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCC
Confidence 35688999999999999999887763 3222235777776543
No 403
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.16 E-value=0.96 Score=48.62 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=34.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEG 261 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 261 (832)
.-.++.|.|.+|+||||+|..++.+...+ =..++|++.. .+.+++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 44689999999999999998888743222 2357776544 3444555555443
No 404
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.16 E-value=0.13 Score=52.29 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 405
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.14 E-value=0.098 Score=48.98 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988864
No 406
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.13 E-value=0.26 Score=46.56 Aligned_cols=111 Identities=11% Similarity=0.019 Sum_probs=53.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC--CCCcHHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS--GLSEFESLMKQIQEYI 283 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 283 (832)
...+..++|.-|.||||.+...+.... ..-..++.+....+ .+.-...+.+.++.... ...+.+ .+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~--~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ--FAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 346888999999999999977776322 22223444432221 11112234444443211 111111 222223
Q ss_pred cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHH
Q 003300 284 MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRS 327 (832)
Q Consensus 284 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 327 (832)
.++-=+|++|.+..-+.+.++.+....+ .|-.||+|.++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 3333499999996654444544333222 3678999999643
No 407
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.07 E-value=0.11 Score=49.91 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.98 E-value=0.086 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|+|+|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 409
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.94 E-value=0.11 Score=50.73 Aligned_cols=125 Identities=21% Similarity=0.159 Sum_probs=64.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhh-c--------------cCCeeEEEEeC----CCccH----------------H
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVK-R--------------NFEKVIWVCVS----DTFEG----------------I 252 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--------------~f~~~~wv~~~----~~~~~----------------~ 252 (832)
.+++|+|..|.|||||.+.++.-.... + ....+.++.-. ...++ .
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 104 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence 689999999999999999998631100 0 00011222100 00111 1
Q ss_pred HHHHHHHHHhCCCCCC------CCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCC--CCCcEEEEEe
Q 003300 253 RVAKAIIEGLGVSASG------LSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITT 323 (832)
Q Consensus 253 ~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTt 323 (832)
+...++++.++..... ....+...-.+.+.+-.++-++++|+--.. +...-..+...+..- ..|.-||++|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt 184 (240)
T 2onk_A 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2234456666553211 122333334466677777889999986321 222222233333221 1245589999
Q ss_pred CCHHHHHHh
Q 003300 324 RDRSVALQL 332 (832)
Q Consensus 324 r~~~~~~~~ 332 (832)
.+...+..+
T Consensus 185 Hd~~~~~~~ 193 (240)
T 2onk_A 185 HDLIEAAML 193 (240)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 987665443
No 410
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.93 E-value=0.56 Score=59.28 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=58.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
.-.++.|+|.+|+||||||.+++... ...=..++|++.....+.. .++.++.... ...+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 44689999999999999999988743 2222468998887766643 1556665421 2345667666666
Q ss_pred HHHc-CCceEEEEeCCCC
Q 003300 281 EYIM-GKKFFLVLDDVWD 297 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv~~ 297 (832)
+..+ .+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 5443 4567999998843
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.92 E-value=0.097 Score=50.63 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...|.|.|+.|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 412
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.90 E-value=0.11 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
..++++|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998863
No 413
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.89 E-value=0.12 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+++|+|..|.|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.86 E-value=0.13 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 415
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.81 E-value=0.12 Score=49.64 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|+|.|..|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 416
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.80 E-value=0.12 Score=49.03 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 417
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.80 E-value=0.16 Score=54.26 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=34.9
Q ss_pred CceecchhhHHHHHHHHhcc-------CC-CCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 180 GEVCGRVDEKNELLSKLLCE-------SG-EQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..++|.++.++.+...+... .. ......+-+.++|++|+|||++|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35788888887776666321 00 0001345688999999999999999997
No 418
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.79 E-value=0.12 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 419
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.78 E-value=0.17 Score=57.15 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=36.1
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.+++|.+..++.+...+... ..+.|+|.+|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899998888888777643 36899999999999999999873
No 420
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.72 E-value=0.4 Score=50.75 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=52.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCC----eeEEEEeCCCc-cHHHHHHHHHHHhCC-------CCCCCCcHHHH
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFE----KVIWVCVSDTF-EGIRVAKAIIEGLGV-------SASGLSEFESL 275 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~ 275 (832)
..++|.|-+|+|||+|+.++++.... +.+ .++++-+++.. .+.++...+.+.-.. ...+.....+.
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 45789999999999999999874222 223 56777777654 455666665443111 11222222221
Q ss_pred -----HHHHHHHHc---CCceEEEEeCC
Q 003300 276 -----MKQIQEYIM---GKKFFLVLDDV 295 (832)
Q Consensus 276 -----~~~l~~~l~---~k~~LlVlDdv 295 (832)
.-.+.++++ ++.+|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 223455553 78999999998
No 421
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.71 E-value=0.13 Score=49.10 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|+|.|..|+||||+|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999986
No 422
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.71 E-value=0.15 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999997
No 423
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.63 E-value=0.13 Score=50.68 Aligned_cols=40 Identities=25% Similarity=0.186 Sum_probs=27.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 246 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 246 (832)
.-.+++|+|..|+|||||++.++..... ..-..++++...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 3468999999999999999988842111 122345665543
No 424
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.61 E-value=0.37 Score=53.80 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+++.|.|.+|.||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999988886
No 425
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.59 E-value=0.28 Score=48.92 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=27.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 247 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 247 (832)
++|+|.|-||+||||+|..++.. ....=..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCC
Confidence 57888999999999999888763 322223577777653
No 426
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.44 E-value=0.25 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|.|..|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998863
No 427
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.43 E-value=1.4 Score=49.38 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|+|||||.+.++.-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3458999999999999999998763
No 428
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.43 E-value=0.16 Score=50.57 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...++.+.|.||+||||++..++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 567888999999999999998885
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.43 E-value=0.12 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..|.|.|+.|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 430
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.40 E-value=0.3 Score=49.34 Aligned_cols=39 Identities=28% Similarity=0.317 Sum_probs=27.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 247 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 247 (832)
.++|+|.|-||+||||+|..++.. ....=..++-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 368888999999999999888763 222223567777654
No 431
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.38 E-value=0.11 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.+++|+|..|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999998863
No 432
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.37 E-value=0.15 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..+|+|.|++|+||||+|+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 433
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.29 E-value=0.24 Score=51.41 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999999887
No 434
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.27 E-value=0.15 Score=51.78 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 435
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.26 E-value=0.46 Score=45.27 Aligned_cols=105 Identities=16% Similarity=0.207 Sum_probs=54.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCC------C----CCCcHHHHHH
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSA------S----GLSEFESLMK 277 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~----~~~~~~~~~~ 277 (832)
-.|.+.|.||+||||+|..++.... ...++ +.++.+......... ..+..+.... . ...+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHHH--
Confidence 3477899999999999988776322 22333 445555443332211 1122222110 0 11233321
Q ss_pred HHHHHHcCCceEEEEeCCCCC------CcccchhhhhhhcCCCCCcEEEEEeCCH
Q 003300 278 QIQEYIMGKKFFLVLDDVWDG------DYKKWDPFFSCLKNGHHESKILITTRDR 326 (832)
Q Consensus 278 ~l~~~l~~k~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~ 326 (832)
+..+.=++|+|+.-.. ...-|..+...++ .|-.|+.|+.-+
T Consensus 81 -----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 -----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp -----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred -----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 2235669999987322 1124555555443 355688888744
No 436
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.23 E-value=0.12 Score=48.32 Aligned_cols=110 Identities=11% Similarity=0.061 Sum_probs=55.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC--CCCcHHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS--GLSEFESLMKQIQEYI 283 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 283 (832)
.-++..++|..|.||||.+...++.... ..+...+ +..... .+.-...+.+.++.... ...+.+ .+.+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~-~g~kV~v-~k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI-AKQKIQV-FKPEID--NRYSKEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEE-EEEC---------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEE-EEeccC--ccchHHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 3478999999999999999777764322 2233333 321111 11111123333332110 001111 233344
Q ss_pred cCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCH
Q 003300 284 MGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDR 326 (832)
Q Consensus 284 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 326 (832)
.++-=+|++|.+..-+.+.++.+....+ .|..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 4433489999985543344444433222 267899998854
No 437
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.21 E-value=0.36 Score=46.72 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
....|+|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 438
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.19 E-value=0.51 Score=50.64 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=53.0
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHHcChhhhccCC-eeEEEEeCCCcc-HHHHHHHHHHHhCC-------CCCCCCcHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLA-QLAYNNDEVKRNFE-KVIWVCVSDTFE-GIRVAKAIIEGLGV-------SASGLSEFESL 275 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~~ 275 (832)
.-..++|.|.+|+|||+|| ..+.+.. .-+ .++++-+++... +.++.+.+...-.. ...+.....+.
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 3456899999999999996 5777742 245 357777777654 45666666543211 12222222221
Q ss_pred -----HHHHHHHH--cCCceEEEEeCC
Q 003300 276 -----MKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 276 -----~~~l~~~l--~~k~~LlVlDdv 295 (832)
.-.+.+++ +++..||++||+
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 22344555 478999999998
No 439
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.14 E-value=0.1 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=16.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHH-c
Q 003300 207 LYVISLVGLGGIGKTTLAQLAY-N 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~-~ 229 (832)
..+++|+|..|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 440
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.12 E-value=0.15 Score=50.99 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999976
No 441
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.10 E-value=0.15 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.-.+++|+|..|.|||||.+.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999986
No 442
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.09 E-value=0.2 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 443
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.09 E-value=0.16 Score=51.00 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35899999999999999999986
No 444
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.07 E-value=0.21 Score=46.75 Aligned_cols=14 Identities=14% Similarity=0.055 Sum_probs=8.2
Q ss_pred HhhcccccEEEecC
Q 003300 441 FSKLACLRALVIRQ 454 (832)
Q Consensus 441 f~~~~~Lr~L~~~~ 454 (832)
..+-+.|+.|.+.+
T Consensus 37 l~~n~~L~~L~L~~ 50 (197)
T 1pgv_A 37 REDDTDLKEVNINN 50 (197)
T ss_dssp HTTCSSCCEEECTT
T ss_pred HhcCCCccEEECCC
Confidence 33455677776654
No 445
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.03 E-value=0.16 Score=48.70 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 446
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.00 E-value=0.28 Score=48.58 Aligned_cols=110 Identities=11% Similarity=0.131 Sum_probs=55.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCC-CccHHHHHHHHHH--HhCCCCCCCCcHHHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEGIRVAKAIIE--GLGVSASGLSEFESLMKQIQEY 282 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~ 282 (832)
.-.+++|+|..|+|||||++.+... ....+...+++.-.. .+-.... ..+.. .++.. ... ....+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~---~~~---l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGED---TKS---FADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT---BSC---HHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCCC---HHH---HHHHHHHH
Confidence 4568999999999999999998862 222223333332110 0000000 00000 01110 112 23455666
Q ss_pred HcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeCCHHHH
Q 003300 283 IMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTRDRSVA 329 (832)
Q Consensus 283 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~ 329 (832)
+..++=+|++|+.- +.+....+.... ..|.-|++||......
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 65567788899984 333333322222 2355688888876543
No 447
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.99 E-value=1.1 Score=50.10 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.-.+++|+|..|.|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999876
No 448
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.92 E-value=0.15 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
-.+++|+|..|.|||||++.++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 449
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.91 E-value=0.21 Score=46.90 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
..-.++|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467899999999999999998864
No 450
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.90 E-value=0.62 Score=58.03 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=57.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
.-+++.|.|.+|+||||||.+++... ...=..++|++.....+.. .++.++.... ...+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 44689999999999999999888743 2233479999887777653 2555655321 2235566666665
Q ss_pred HHHc-CCceEEEEeCCC
Q 003300 281 EYIM-GKKFFLVLDDVW 296 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv~ 296 (832)
...+ .+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHhcCCCEEEECCHH
Confidence 5443 456699999984
No 451
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.87 E-value=1.4 Score=42.59 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=45.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChh-hhccCC-eeEEEEeCCCccHHHHHHHHHHHhCCCCC---------------CC-
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDE-VKRNFE-KVIWVCVSDTFEGIRVAKAIIEGLGVSAS---------------GL- 269 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------------~~- 269 (832)
+.+.|.|..|.||||+...+.-+.. ...... ..+.+.........++...+...++.... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 3689999999999987655443211 111221 23333233333334455555554433210 11
Q ss_pred ----CcHHHHHHHHHHHHcCCceEEEEeCCCC
Q 003300 270 ----SEFESLMKQIQEYIMGKKFFLVLDDVWD 297 (832)
Q Consensus 270 ----~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 297 (832)
.+...+...+.+.+. +--+||+|+++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~-~~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIR-GISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCT-TCCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhc-CCcEEEEECCcc
Confidence 234555555554333 334789999965
No 452
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.87 E-value=0.52 Score=50.54 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=53.2
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHHcChhhhccCC-eeEEEEeCCCcc-HHHHHHHHHHHhCCC-------CCCCCcHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLA-QLAYNNDEVKRNFE-KVIWVCVSDTFE-GIRVAKAIIEGLGVS-------ASGLSEFESL 275 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~~ 275 (832)
.-..++|.|.+|+|||+|| ..+.+.. .-+ .++++-+++... +.++.+.+...-... ..+.....+.
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 3456899999999999996 5777632 345 357777777654 456666665532221 1222222221
Q ss_pred -----HHHHHHHH--cCCceEEEEeCC
Q 003300 276 -----MKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 276 -----~~~l~~~l--~~k~~LlVlDdv 295 (832)
.-.+.+++ +++..||++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 12344555 478999999998
No 453
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.84 E-value=0.16 Score=49.67 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 454
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.83 E-value=0.16 Score=49.01 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.|.|.|+.|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 455
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.80 E-value=0.16 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||.+.++.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3458999999999999999999863
No 456
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.80 E-value=0.15 Score=47.39 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 457
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.80 E-value=0.17 Score=49.79 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+++|+|..|.|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.79 E-value=0.32 Score=48.88 Aligned_cols=43 Identities=28% Similarity=0.160 Sum_probs=29.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhc--------cCCeeEEEEeCCCc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKR--------NFEKVIWVCVSDTF 249 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~~~~~ 249 (832)
-.++.|+|.+|+|||||+..++....... .-..++|++.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~ 80 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP 80 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH
Confidence 35899999999999999998886321110 01346777766544
No 459
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.79 E-value=0.16 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
-.+++|+|..|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 460
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.79 E-value=0.14 Score=49.00 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.+++|+|..|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999863
No 461
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.69 E-value=0.17 Score=47.27 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCCceeEEEeCCc-Ccc-----cccccccCCCcccEEeccCccCcc----ccCcccccccCCceeecCCccCccc----c
Q 003300 481 KLIHLRYLNLSEL-GIE-----RLPKTLCELYNLQKLDIRRCRNLK----ELPAGIGKLKNMRSLLNGETYSLKY----M 546 (832)
Q Consensus 481 ~l~~L~~L~Ls~~-~i~-----~lp~~~~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~~~----~ 546 (832)
+-+.|+.|+|++| .|. .+-+.+..-..|+.|+|++|.... .+...+..-+.|++|+|+.|.+... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3444555555553 433 123334444555555555554321 1222233444566666665543211 1
Q ss_pred cCCCCCCCCCccCC
Q 003300 547 PVGISKLTSLRTLD 560 (832)
Q Consensus 547 p~~l~~L~~L~~L~ 560 (832)
...+..-+.|++|+
T Consensus 119 a~aL~~N~tL~~L~ 132 (197)
T 1pgv_A 119 LRSTLVTQSIVEFK 132 (197)
T ss_dssp HHHTTTTCCCSEEE
T ss_pred HHHHhhCCceeEEE
Confidence 12233344466665
No 462
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.65 E-value=0.38 Score=45.53 Aligned_cols=44 Identities=25% Similarity=0.170 Sum_probs=30.6
Q ss_pred EEEEEE-ecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHH
Q 003300 208 YVISLV-GLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIR 253 (832)
Q Consensus 208 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 253 (832)
++|+|+ +-||+||||+|..++.. ....=..++.|+.....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCCHHH
Confidence 578887 67999999999888763 333323577888776555443
No 463
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.63 E-value=0.21 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
+-|.|+|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988764
No 464
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.62 E-value=1.2 Score=43.17 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=53.7
Q ss_pred EEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCC--------CCC-----CCcHHHHH
Q 003300 210 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVS--------ASG-----LSEFESLM 276 (832)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--------~~~-----~~~~~~~~ 276 (832)
+.|+|..|.|||.+|..+... . . ..++++. ....-..+....+.+ ++.. ... ..+.+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~--~-~~~liv~-P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L--S-TPTLIVV-PTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S--C-SCEEEEE-SSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c--C-CCEEEEe-CCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 778999999999999877752 1 1 2344443 221112223333322 3221 000 01233333
Q ss_pred HHHHHHHcCCceEEEEeCCCCCCcccchhhhhhhcCCCCCcEEEEEeC
Q 003300 277 KQIQEYIMGKKFFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTR 324 (832)
Q Consensus 277 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 324 (832)
.... .+.++--+||+|+++......+..+...++ ...++.+|..
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3332 334455699999997765555666555443 2345555654
No 465
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.61 E-value=0.17 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.177 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHc
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...|.|.|+.|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 466
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.60 E-value=0.17 Score=49.67 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.+++|+|..|.|||||.+.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999763
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.60 E-value=0.22 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.174 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999986
No 468
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.55 E-value=0.18 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 469
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.52 E-value=0.17 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 470
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.49 E-value=0.2 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
+.|.|.|..|+||||||.+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999873
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.48 E-value=0.23 Score=53.14 Aligned_cols=38 Identities=32% Similarity=0.274 Sum_probs=26.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEe
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 245 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 245 (832)
..++|+|+|.+|+||||++..++.....+ . ..++.|++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~-G-~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR-G-LKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH-H-CCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEec
Confidence 45799999999999999998888642222 1 23555554
No 472
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.45 E-value=0.61 Score=58.13 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=60.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHHHHHHHHHhCCCCC-----CCCcHHHHHHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 280 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (832)
.-++|-|+|+.|+||||||.++... .+..=...+|+++.+..+..- ++.++.... .....++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 3478999999999999999888863 344446789999888777653 777777532 2334466666666
Q ss_pred HHHc-CCceEEEEeCC
Q 003300 281 EYIM-GKKFFLVLDDV 295 (832)
Q Consensus 281 ~~l~-~k~~LlVlDdv 295 (832)
..++ +..-+||+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 6665 55668899988
No 473
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.34 E-value=0.46 Score=48.89 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=32.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCccHHHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEGIRV 254 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 254 (832)
..+++.+.|-||+||||+|..++. .....=..++-|+.....+....
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~--~la~~g~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH--HHHhCCCcEEEEECCCCCChhHH
Confidence 457888999999999999988776 23333345777777655544433
No 474
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.34 E-value=0.44 Score=49.31 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=31.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcChhhh--ccCCeeEEEEeCCCccHH
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNNDEVK--RNFEKVIWVCVSDTFEGI 252 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~ 252 (832)
..+++.+.|.||+||||+|..++.. .. ..=..++-|+.....+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~--la~~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQ--LALAQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHH--HHHHCTTSCEEEEECCSSCHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH--HHHhcCCCeEEEEECCCCCChH
Confidence 5678999999999999999888762 33 233457777776544443
No 475
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.33 E-value=0.19 Score=51.12 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHc
Q 003300 208 YVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999885
No 476
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.31 E-value=0.19 Score=49.42 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHcC
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.+++|+|..|.|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998863
No 477
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.27 E-value=0.19 Score=49.85 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||.+.++.-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999763
No 478
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.19 E-value=0.19 Score=50.13 Aligned_cols=25 Identities=44% Similarity=0.433 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.+++|+|..|.|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999863
No 479
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.12 E-value=0.1 Score=52.80 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999886
No 480
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.09 E-value=0.2 Score=49.44 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=65.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHcChhh-hcc---CCeeEEEEeCC----CccH----------------------HHHHHH
Q 003300 208 YVISLVGLGGIGKTTLAQLAYNNDEV-KRN---FEKVIWVCVSD----TFEG----------------------IRVAKA 257 (832)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~---f~~~~wv~~~~----~~~~----------------------~~~~~~ 257 (832)
.+++|+|..|.|||||.+.++.-... .+. ...+.|+.-.. ..++ .+....
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 58999999999999999999874211 010 11233432110 1111 122344
Q ss_pred HHHHhCCCCC------CCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcC--CCCCcEEEEEeCCHHH
Q 003300 258 IIEGLGVSAS------GLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKN--GHHESKILITTRDRSV 328 (832)
Q Consensus 258 i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~~ 328 (832)
+++.++.... .....+...-.+.+.+-.++-++++|+--.. |...-..+...+.. ...|.-||++|.+...
T Consensus 112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 5555554311 1112233333455666677789999987331 22222233333322 1225669999998776
Q ss_pred HHHh
Q 003300 329 ALQL 332 (832)
Q Consensus 329 ~~~~ 332 (832)
+..+
T Consensus 192 ~~~~ 195 (253)
T 2nq2_C 192 VVAI 195 (253)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6544
No 481
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.06 E-value=0.33 Score=51.79 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=53.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhcc--CCeeEEEEeCCCc-cHHHHHHHHHHHhCC-------CCCCCCcHHHH-
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSDTF-EGIRVAKAIIEGLGV-------SASGLSEFESL- 275 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~- 275 (832)
-..++|.|-+|+|||+|+.+++++....+. =+.++++-+++.. .+.++...+...-.. ...+.....+.
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 345788999999999999999875332111 1356777777654 456666666543211 11222221111
Q ss_pred ----HHHHHHHHc---CCceEEEEeCC
Q 003300 276 ----MKQIQEYIM---GKKFFLVLDDV 295 (832)
Q Consensus 276 ----~~~l~~~l~---~k~~LlVlDdv 295 (832)
.-.+.++++ ++..|+++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 222445554 79999999997
No 482
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.05 E-value=0.2 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999863
No 483
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.05 E-value=0.34 Score=47.55 Aligned_cols=37 Identities=22% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 189 KNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+..||.... .....+.++|++|.|||.+|.++++
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344666665531 2356799999999999999999986
No 484
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.03 E-value=0.31 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
No 485
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.01 E-value=0.26 Score=52.18 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 556999999999999999999987
No 486
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.99 E-value=0.2 Score=50.17 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
-.+++|+|..|.|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999863
No 487
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.98 E-value=2 Score=50.60 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=67.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhhccCC-----eeEEEEeCCC-------ccHH-----------HHHHHHHHHhC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-----KVIWVCVSDT-------FEGI-----------RVAKAIIEGLG 263 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-----~~~wv~~~~~-------~~~~-----------~~~~~i~~~l~ 263 (832)
-.+++|+|..|.|||||.+.++.- .+. .++ .+.+ +.+. .++. .-...+++.++
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 358999999999999999999831 111 011 1222 2221 1221 22344566666
Q ss_pred CCC-------CCCCcHHHHHHHHHHHHcCCceEEEEeCCCCC-CcccchhhhhhhcCCCCCcEEEEEeCCHHHHHHhC
Q 003300 264 VSA-------SGLSEFESLMKQIQEYIMGKKFFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTRDRSVALQLG 333 (832)
Q Consensus 264 ~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~ 333 (832)
... ......+...-.|.+.+-.++=+|+||.--.. +...-..+...+.. .|.-||++|.+......+.
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~a 612 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVC 612 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHC
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhC
Confidence 521 11222333344455666677889999986321 22233334444444 4667999999987766543
No 488
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.96 E-value=0.19 Score=47.42 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998874
No 489
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.96 E-value=0.19 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999886
No 490
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.95 E-value=0.8 Score=43.60 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
...|.|.|..|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999873
No 491
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.81 E-value=0.23 Score=50.93 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=22.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHcC
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
..++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999999863
No 492
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.78 E-value=0.22 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 205 QGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999885
No 493
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.71 E-value=0.57 Score=49.61 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=52.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHcChhhh--------ccCC-eeEEEEeCCCc-cHHHHHHHHHHHhCC-------CCCCC
Q 003300 207 LYVISLVGLGGIGKTTLAQLAYNNDEVK--------RNFE-KVIWVCVSDTF-EGIRVAKAIIEGLGV-------SASGL 269 (832)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~ 269 (832)
-..++|.|-+|+|||+|+.++++..... .+=+ .++++-+++.. .+.++...+.+.-.. ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3457899999999999999998743221 0111 56777777654 445666655442101 11222
Q ss_pred CcHHHH-----HHHHHHHHc---CCceEEEEeCC
Q 003300 270 SEFESL-----MKQIQEYIM---GKKFFLVLDDV 295 (832)
Q Consensus 270 ~~~~~~-----~~~l~~~l~---~k~~LlVlDdv 295 (832)
....+. .-.+.++++ ++..|+++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 222222 223455553 78999999998
No 494
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.71 E-value=0.34 Score=50.76 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=33.0
Q ss_pred CceecchhhHHHHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHc
Q 003300 180 GEVCGRVDEKNELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 180 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
..++|....+.++...+..... ....+.|.|.+|.||+++|+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHH
Confidence 3578887777776665543322 222367999999999999999986
No 495
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.68 E-value=0.73 Score=49.51 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=53.9
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHHcChhhh----ccCC-eeEEEEeCCCcc-HHHHHHHHHHHhCC-------CCCCCCc
Q 003300 206 GLYVISLVGLGGIGKTTLA-QLAYNNDEVK----RNFE-KVIWVCVSDTFE-GIRVAKAIIEGLGV-------SASGLSE 271 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~----~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~-------~~~~~~~ 271 (832)
.-..++|.|.+|+|||+|| ..+.+..... .+-+ .++++-+++... +.++.+.+...-.. ...+...
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 240 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA 240 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCH
Confidence 3456899999999999995 5777743210 1234 477777877654 45666666543211 1122222
Q ss_pred HHHH-----HHHHHHHH--cCCceEEEEeCC
Q 003300 272 FESL-----MKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 272 ~~~~-----~~~l~~~l--~~k~~LlVlDdv 295 (832)
..+. .-.+.+++ +++..||++||+
T Consensus 241 ~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 241 PLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 2221 12344555 478999999998
No 496
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.67 E-value=0.23 Score=44.80 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcC
Q 003300 209 VISLVGLGGIGKTTLAQLAYNN 230 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (832)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 497
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.63 E-value=0.23 Score=47.08 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 003300 209 VISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (832)
+|.|.|.+|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999886
No 498
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.59 E-value=1.1 Score=48.61 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=57.8
Q ss_pred HHHHHHhccCCCCCCCeEEEEEEecCCCcHHHHHHHHHcChhhhccCCeeEEEEeCCCcc-HHHHHHHHHH----HhC--
Q 003300 191 ELLSKLLCESGEQQQGLYVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-GIRVAKAIIE----GLG-- 263 (832)
Q Consensus 191 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~----~l~-- 263 (832)
++++.|..-. .-..++|.|..|+|||+|++++++. .+-+.++++-+++... +.+++..+-+ ..+
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~ 286 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKP 286 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEE
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHHHHhcccccccc
Confidence 3555555432 3457899999999999999998762 2335788888887654 4555555422 111
Q ss_pred --------CCCCCCCcHHHH-----HHHHHHHH--cCCceEEEEeCC
Q 003300 264 --------VSASGLSEFESL-----MKQIQEYI--MGKKFFLVLDDV 295 (832)
Q Consensus 264 --------~~~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 295 (832)
....+.....+. .-.+.+++ +++..||++|++
T Consensus 287 ~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~Dsl 333 (588)
T 3mfy_A 287 LMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADST 333 (588)
T ss_dssp GGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECT
T ss_pred cccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecch
Confidence 011122211111 11234444 489999999999
No 499
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.58 E-value=0.21 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHc
Q 003300 206 GLYVISLVGLGGIGKTTLAQLAYN 229 (832)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (832)
...+|.|+|++|+||||+|+.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999886
No 500
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.46 E-value=0.49 Score=49.76 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=29.7
Q ss_pred CCeEEEEEEe-cCCCcHHHHHHHHHcChhhhccCCeeEEEEeC
Q 003300 205 QGLYVISLVG-LGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 246 (832)
Q Consensus 205 ~~~~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 246 (832)
...++|+|+| -||+||||+|..++.. ....=..++.|++.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~--La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIA--HANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHH--HHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHH--HHhCCCCEEEEECC
Confidence 4678999885 9999999999888763 33233357888866
Done!