Query 003301
Match_columns 832
No_of_seqs 1094 out of 5912
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 20:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-78 6.2E-83 726.9 35.9 572 4-587 84-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.9E-72 1.3E-76 672.0 35.6 555 1-569 54-715 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-64 3.9E-69 602.1 43.1 568 2-575 9-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-64 1.4E-68 597.4 45.3 543 1-553 29-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 7.6E-62 2.6E-66 570.1 35.9 533 2-553 17-565 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-60 9.9E-65 575.0 39.2 526 2-553 9-565 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-59 8.2E-64 548.8 35.7 528 2-553 16-563 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3.8E-59 1.3E-63 547.2 35.7 514 1-529 37-565 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-57 1.3E-61 547.6 42.2 527 24-576 7-565 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 9.9E-58 3.4E-62 535.1 33.8 509 1-529 36-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 4.2E-54 1.4E-58 500.8 31.7 508 25-554 11-537 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 2.9E-53 9.8E-58 493.8 32.1 506 3-530 13-537 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-52 1.2E-56 482.1 32.2 490 3-553 11-515 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1E-52 3.5E-57 486.6 25.7 466 96-576 27-515 (549)
15 4eco_A Uncharacterized protein 100.0 1.2E-52 4E-57 491.6 21.3 461 21-525 81-601 (636)
16 4eco_A Uncharacterized protein 100.0 1.2E-51 3.9E-56 483.2 22.2 440 95-551 81-603 (636)
17 4g8a_A TOLL-like receptor 4; l 100.0 4.5E-50 1.5E-54 473.3 33.3 528 5-553 39-585 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-51 7.7E-56 471.8 20.4 456 48-553 3-486 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 3.8E-50 1.3E-54 477.0 31.3 472 21-549 323-865 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 6.4E-50 2.2E-54 459.7 25.5 457 24-528 3-485 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 1.4E-49 4.7E-54 472.3 26.9 429 2-450 328-862 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-48 1.1E-52 457.6 35.2 546 12-576 19-585 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-48 7.6E-53 450.6 23.5 460 73-553 34-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.8E-47 2.7E-51 437.7 25.3 458 48-529 34-515 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 2.4E-44 8.4E-49 402.7 25.4 426 14-553 4-434 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 3.3E-44 1.1E-48 405.1 25.6 376 119-554 30-414 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 6E-43 2.1E-47 394.8 28.0 382 75-504 15-412 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 1.5E-42 5.1E-47 388.2 27.2 408 1-487 15-440 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 3.3E-40 1.1E-44 369.5 28.7 362 36-483 33-394 (457)
30 3bz5_A Internalin-J, INLJ; leu 100.0 6.6E-40 2.2E-44 367.1 26.9 359 86-553 34-392 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 4.6E-40 1.6E-44 373.3 25.8 348 194-576 14-361 (477)
32 1o6v_A Internalin A; bacterial 100.0 3.1E-39 1.1E-43 364.8 29.9 358 78-501 32-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 8.6E-39 3E-43 361.1 31.8 347 42-453 43-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 1.3E-37 4.4E-42 353.2 27.2 320 98-476 14-333 (477)
35 4fih_A Serine/threonine-protei 100.0 5.4E-38 1.8E-42 332.2 14.4 168 659-832 74-242 (346)
36 3o6n_A APL1; leucine-rich repe 100.0 3.9E-37 1.3E-41 339.5 21.7 335 190-575 44-378 (390)
37 4aw0_A HPDK1, 3-phosphoinositi 100.0 5.3E-38 1.8E-42 327.1 13.1 170 659-832 32-206 (311)
38 3oja_B Anopheles plasmodium-re 100.0 8E-37 2.7E-41 355.6 21.7 336 190-576 50-385 (597)
39 4b9d_A Serine/threonine-protei 100.0 1E-37 3.5E-42 330.6 12.1 171 658-832 23-197 (350)
40 4fie_A Serine/threonine-protei 100.0 4.8E-37 1.6E-41 333.0 14.9 169 658-832 150-319 (423)
41 3o6n_A APL1; leucine-rich repe 100.0 7.9E-36 2.7E-40 329.0 24.1 336 165-552 43-378 (390)
42 1ogq_A PGIP-2, polygalacturona 100.0 1E-36 3.5E-41 324.7 16.1 256 320-577 51-310 (313)
43 4asz_A BDNF/NT-3 growth factor 100.0 3.4E-37 1.2E-41 322.4 11.6 171 659-832 13-202 (299)
44 4fmz_A Internalin; leucine ric 100.0 2.5E-35 8.5E-40 319.8 25.3 308 186-548 39-346 (347)
45 3hyh_A Carbon catabolite-derep 100.0 1.2E-36 4.1E-41 312.7 13.6 168 658-832 12-183 (275)
46 3omv_A RAF proto-oncogene seri 100.0 1.3E-36 4.3E-41 317.9 13.3 170 657-832 34-206 (307)
47 4aoj_A High affinity nerve gro 100.0 1.5E-36 5E-41 322.1 12.9 171 659-832 41-232 (329)
48 3fpq_A Serine/threonine-protei 100.0 4.4E-36 1.5E-40 311.4 15.8 164 662-832 29-202 (290)
49 4fmz_A Internalin; leucine ric 100.0 9.9E-35 3.4E-39 315.1 26.3 308 162-524 39-346 (347)
50 4g3f_A NF-kappa-beta-inducing 100.0 1.3E-36 4.3E-41 320.8 10.7 166 658-832 57-228 (336)
51 3ubd_A Ribosomal protein S6 ki 100.0 6E-37 2.1E-41 319.4 7.7 169 659-832 24-198 (304)
52 4g31_A Eukaryotic translation 100.0 7.8E-36 2.7E-40 312.7 13.3 172 658-832 4-202 (299)
53 4gt4_A Tyrosine-protein kinase 100.0 5.4E-36 1.8E-40 314.7 11.4 171 659-832 26-219 (308)
54 3oja_B Anopheles plasmodium-re 100.0 1.1E-34 3.6E-39 337.7 23.2 310 94-477 50-359 (597)
55 1ogq_A PGIP-2, polygalacturona 100.0 3E-35 1E-39 313.3 16.3 252 294-549 50-306 (313)
56 3hmm_A TGF-beta receptor type- 100.0 5.3E-35 1.8E-39 308.2 13.5 170 659-832 3-184 (303)
57 2ft3_A Biglycan; proteoglycan, 100.0 2E-33 6.9E-38 302.5 26.1 294 192-546 34-331 (332)
58 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-33 1.3E-37 300.4 25.1 177 367-548 123-307 (332)
59 1xku_A Decorin; proteoglycan, 100.0 6.9E-33 2.4E-37 298.1 25.5 295 192-546 32-330 (330)
60 1xku_A Decorin; proteoglycan, 100.0 1.2E-32 4.1E-37 296.3 26.7 289 119-449 31-329 (330)
61 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-37 5.5E-42 351.0 -12.7 358 120-500 4-411 (461)
62 4ase_A Vascular endothelial gr 100.0 1.7E-34 5.7E-39 308.8 11.3 181 649-832 54-259 (353)
63 3v5w_A G-protein coupled recep 100.0 2.2E-33 7.4E-38 317.7 14.7 168 658-832 188-362 (689)
64 4b99_A Mitogen-activated prote 100.0 1.8E-33 6.3E-38 306.2 12.8 169 659-832 54-234 (398)
65 1z7x_W Ribonuclease inhibitor; 100.0 5.5E-36 1.9E-40 338.5 -7.6 389 20-431 2-443 (461)
66 4f9c_A Cell division cycle 7-r 100.0 4.2E-33 1.4E-37 300.3 14.0 168 656-832 18-218 (361)
67 3uto_A Twitchin; kinase, muscl 100.0 2.3E-32 7.9E-37 312.7 14.3 170 658-832 156-328 (573)
68 2z80_A TOLL-like receptor 2, v 100.0 1.6E-31 5.4E-36 290.3 12.2 258 295-553 53-319 (353)
69 4aw2_A Serine/threonine-protei 100.0 7.7E-32 2.6E-36 298.5 9.8 180 650-832 65-248 (437)
70 2z66_A Variable lymphocyte rec 100.0 8.2E-31 2.8E-35 278.7 17.4 230 321-551 30-264 (306)
71 2z66_A Variable lymphocyte rec 100.0 2.2E-30 7.5E-35 275.4 19.5 278 244-553 10-292 (306)
72 3zyi_A Leucine-rich repeat-con 100.0 3.2E-30 1.1E-34 289.8 21.8 252 296-553 56-308 (452)
73 3zyj_A Leucine-rich repeat-con 100.0 4.1E-30 1.4E-34 287.9 22.4 252 296-553 45-297 (440)
74 2z80_A TOLL-like receptor 2, v 100.0 1.6E-30 5.3E-35 282.5 17.5 274 25-310 35-317 (353)
75 1ozn_A Reticulon 4 receptor; N 100.0 4.2E-30 1.4E-34 270.3 19.3 252 297-553 14-266 (285)
76 3ogk_B Coronatine-insensitive 100.0 6.9E-33 2.4E-37 323.5 -3.2 444 85-545 63-548 (592)
77 1ozn_A Reticulon 4 receptor; N 100.0 2.4E-30 8.1E-35 272.1 15.7 252 321-575 13-265 (285)
78 2vd5_A DMPK protein; serine/th 100.0 1.3E-30 4.5E-35 286.6 11.5 180 650-832 52-235 (412)
79 3ogk_B Coronatine-insensitive 100.0 4.2E-32 1.4E-36 316.8 -0.8 408 38-453 66-527 (592)
80 4fcg_A Uncharacterized protein 100.0 2.2E-29 7.4E-34 269.6 19.0 224 320-548 82-314 (328)
81 3v8s_A RHO-associated protein 100.0 2.1E-30 7.3E-35 284.7 11.1 176 652-832 62-241 (410)
82 3s95_A LIMK-1, LIM domain kina 100.0 1.2E-29 4.1E-34 270.4 16.1 171 658-831 9-193 (310)
83 1wwl_A Monocyte differentiatio 100.0 6.4E-31 2.2E-35 280.0 5.8 246 293-549 42-310 (312)
84 3zgw_A Maternal embryonic leuc 100.0 5.1E-30 1.7E-34 275.9 12.7 172 657-832 8-181 (347)
85 3fxz_A Serine/threonine-protei 100.0 1.7E-29 5.7E-34 267.1 16.4 168 658-831 19-187 (297)
86 3fe3_A MAP/microtubule affinit 100.0 1E-29 3.4E-34 272.1 14.7 169 658-832 14-185 (328)
87 1o6l_A RAC-beta serine/threoni 100.0 1.4E-29 4.8E-34 271.7 15.4 170 658-832 4-177 (337)
88 3txo_A PKC-L, NPKC-ETA, protei 100.0 1.3E-29 4.3E-34 273.9 13.3 171 657-832 21-196 (353)
89 4fcg_A Uncharacterized protein 100.0 8.2E-29 2.8E-33 265.2 19.3 225 294-524 81-314 (328)
90 3uim_A Brassinosteroid insensi 100.0 1.5E-29 5E-34 271.8 13.4 183 646-831 17-206 (326)
91 4fr4_A YANK1, serine/threonine 100.0 3.2E-29 1.1E-33 272.9 15.9 169 658-832 14-186 (384)
92 3zyi_A Leucine-rich repeat-con 100.0 1.5E-28 5.2E-33 276.1 21.6 251 267-528 56-307 (452)
93 2qkw_B Protein kinase; three-h 100.0 9.4E-30 3.2E-34 272.6 10.9 182 647-831 27-212 (321)
94 3zyj_A Leucine-rich repeat-con 100.0 2.2E-28 7.4E-33 273.8 22.1 250 267-527 45-295 (440)
95 4eqm_A Protein kinase; transfe 100.0 2.5E-29 8.6E-34 265.4 13.5 170 658-831 10-183 (294)
96 2c30_A Serine/threonine-protei 100.0 6E-29 2E-33 265.9 16.4 179 647-831 23-212 (321)
97 1wwl_A Monocyte differentiatio 100.0 2.3E-30 7.7E-35 275.8 4.7 252 40-308 38-310 (312)
98 4dc2_A Protein kinase C IOTA t 100.0 2.2E-29 7.5E-34 275.1 12.6 170 658-832 51-225 (396)
99 1fot_A TPK1 delta, CAMP-depend 100.0 5.4E-29 1.9E-33 265.1 15.3 167 658-832 5-175 (318)
100 1xjd_A Protein kinase C, theta 100.0 3.4E-29 1.1E-33 269.4 13.3 172 656-832 14-190 (345)
101 4hcu_A Tyrosine-protein kinase 100.0 2.7E-29 9.1E-34 261.8 12.1 170 658-831 9-178 (269)
102 3o53_A Protein LRIM1, AGAP0063 100.0 3.1E-30 1E-34 275.4 4.4 268 242-553 11-281 (317)
103 3a8x_A Protein kinase C IOTA t 100.0 5.7E-29 1.9E-33 268.2 14.1 170 658-832 8-182 (345)
104 2yab_A Death-associated protei 100.0 8.8E-29 3E-33 267.9 15.5 169 658-832 11-190 (361)
105 1tki_A Titin; serine kinase, m 100.0 7.7E-29 2.6E-33 264.8 14.9 168 658-831 4-174 (321)
106 2i0e_A Protein kinase C-beta I 100.0 5.9E-29 2E-33 268.4 13.3 171 657-832 18-193 (353)
107 3sxs_A Cytoplasmic tyrosine-pr 100.0 6E-29 2.1E-33 259.0 12.7 170 658-831 7-176 (268)
108 3o53_A Protein LRIM1, AGAP0063 100.0 7.5E-30 2.6E-34 272.4 5.9 266 220-529 13-281 (317)
109 3niz_A Rhodanese family protei 100.0 7.7E-29 2.6E-33 263.8 13.5 169 658-831 20-190 (311)
110 1rdq_E PKA C-alpha, CAMP-depen 100.0 8.9E-29 3.1E-33 267.1 14.0 167 658-832 40-210 (350)
111 3h4j_B AMPK kdaid, SNF1-like p 100.0 1.3E-28 4.4E-33 263.9 14.3 168 658-832 8-179 (336)
112 3kul_A Ephrin type-A receptor 100.0 1.2E-28 4E-33 264.1 14.0 172 658-832 48-226 (325)
113 1kob_A Twitchin; kinase, intra 100.0 1.8E-28 6.1E-33 268.0 15.5 170 658-832 50-222 (387)
114 3g06_A SSPH2 (leucine-rich rep 100.0 3.2E-27 1.1E-31 271.8 26.6 270 191-536 40-309 (622)
115 3g06_A SSPH2 (leucine-rich rep 100.0 9.7E-28 3.3E-32 276.1 22.3 269 21-343 40-308 (622)
116 3o0g_A Cell division protein k 100.0 2E-28 6.7E-33 258.5 15.2 168 659-831 2-172 (292)
117 3qd2_B Eukaryotic translation 100.0 1.8E-28 6.1E-33 264.0 15.0 172 657-831 4-247 (332)
118 2psq_A Fibroblast growth facto 100.0 1.3E-28 4.3E-33 268.6 13.8 171 658-831 80-276 (370)
119 3gen_A Tyrosine-protein kinase 100.0 8.1E-29 2.8E-33 260.2 11.2 171 657-831 22-192 (283)
120 3soa_A Calcium/calmodulin-depe 100.0 2.1E-28 7.3E-33 272.0 15.0 171 657-832 9-185 (444)
121 3tki_A Serine/threonine-protei 100.0 9.2E-29 3.2E-33 264.6 11.4 171 658-832 6-179 (323)
122 3p86_A Serine/threonine-protei 100.0 6.3E-29 2.2E-33 264.1 10.0 174 653-831 31-210 (309)
123 3a62_A Ribosomal protein S6 ki 100.0 1.1E-28 3.7E-33 264.7 11.8 169 658-831 16-192 (327)
124 1ob3_A PFPK5, cell division co 100.0 1.1E-28 3.9E-33 259.7 11.5 168 659-831 2-171 (288)
125 2zv2_A Calcium/calmodulin-depe 100.0 2.4E-28 8.1E-33 258.7 13.9 169 658-832 12-209 (298)
126 2r5t_A Serine/threonine-protei 100.0 1.2E-28 4E-33 268.0 11.6 170 658-832 37-211 (373)
127 2bdw_A Hypothetical protein K1 100.0 2.7E-28 9.2E-33 265.0 14.3 170 657-832 27-202 (362)
128 3e7e_A HBUB1, BUB1A, mitotic c 100.0 1.7E-28 5.9E-33 267.7 12.8 170 657-832 63-257 (365)
129 3soc_A Activin receptor type-2 100.0 1.9E-28 6.6E-33 262.3 12.9 167 658-831 23-204 (322)
130 2y0a_A Death-associated protei 100.0 3.4E-28 1.2E-32 260.6 14.8 168 658-831 10-188 (326)
131 3c0i_A Peripheral plasma membr 100.0 1.6E-28 5.6E-33 265.9 12.2 171 658-832 23-205 (351)
132 2qol_A Ephrin receptor; recept 100.0 1.8E-28 6.2E-33 267.5 12.2 171 658-831 44-221 (373)
133 2y94_A 5'-AMP-activated protei 100.0 3.8E-28 1.3E-32 271.6 15.0 169 658-832 15-187 (476)
134 2acx_A G protein-coupled recep 100.0 3.3E-28 1.1E-32 275.6 14.3 170 658-832 183-357 (576)
135 3ugc_A Tyrosine-protein kinase 99.9 1.2E-28 4E-33 260.7 9.4 171 658-831 9-188 (295)
136 3p1a_A MYT1 kinase, membrane-a 99.9 1.6E-28 5.3E-33 261.6 10.0 169 658-832 56-228 (311)
137 2z62_A TOLL-like receptor 4, v 99.9 1.8E-27 6.3E-32 248.8 17.9 210 344-554 29-243 (276)
138 2pmi_A Negative RE, cyclin-dep 99.9 4.4E-28 1.5E-32 258.9 13.4 170 657-831 3-179 (317)
139 3c4z_A Rhodopsin kinase; Ser/T 99.9 5.7E-28 1.9E-32 273.1 15.0 171 658-832 184-361 (543)
140 2x4f_A Myosin light chain kina 99.9 4.3E-28 1.5E-32 264.3 13.2 164 663-831 93-259 (373)
141 3cbl_A C-FES, proto-oncogene t 99.9 1.5E-28 5.3E-33 268.9 9.7 172 657-831 112-286 (377)
142 3uc3_A Serine/threonine-protei 99.9 3.8E-28 1.3E-32 263.9 12.5 168 658-832 19-189 (361)
143 3rp9_A Mitogen-activated prote 99.9 3.3E-28 1.1E-32 273.8 12.5 169 658-831 52-254 (458)
144 3oja_A Leucine-rich immune mol 99.9 1.3E-28 4.3E-33 278.1 8.9 234 295-543 35-270 (487)
145 2nru_A Interleukin-1 receptor- 99.9 1.3E-27 4.6E-32 254.1 16.3 182 646-831 12-206 (307)
146 3t9t_A Tyrosine-protein kinase 99.9 3.3E-28 1.1E-32 253.2 11.4 170 658-831 7-176 (267)
147 3f3z_A Calcium/calmodulin-depe 99.9 8.6E-28 2.9E-32 251.6 14.2 168 658-831 8-179 (277)
148 4ejn_A RAC-alpha serine/threon 99.9 2.2E-28 7.6E-33 274.0 10.1 170 658-832 147-321 (446)
149 2vuw_A Serine/threonine-protei 99.9 5.6E-29 1.9E-33 268.3 4.8 164 658-832 19-249 (336)
150 3cok_A Serine/threonine-protei 99.9 1.5E-27 5E-32 249.9 15.5 171 658-832 10-184 (278)
151 4euu_A Serine/threonine-protei 99.9 7.2E-28 2.5E-32 257.6 13.4 169 658-831 8-186 (319)
152 2izr_A Casein kinase I isoform 99.9 5.2E-28 1.8E-32 260.0 12.0 168 658-831 8-188 (330)
153 1mp8_A Focal adhesion kinase 1 99.9 3.8E-28 1.3E-32 254.8 10.6 170 658-831 14-188 (281)
154 3kn6_A Ribosomal protein S6 ki 99.9 1.5E-27 5.2E-32 255.3 15.3 161 664-832 16-181 (325)
155 3n9x_A Phosphotransferase; mal 99.9 6.6E-28 2.3E-32 268.7 12.8 169 658-831 25-222 (432)
156 1vzo_A Ribosomal protein S6 ki 99.9 2.5E-28 8.7E-33 264.8 9.1 170 658-831 53-231 (355)
157 3ork_A Serine/threonine protei 99.9 2.1E-28 7.3E-33 260.7 8.3 170 658-831 11-190 (311)
158 4fvq_A Tyrosine-protein kinase 99.9 3.9E-28 1.3E-32 255.9 10.3 166 658-831 7-188 (289)
159 3vhe_A Vascular endothelial gr 99.9 3E-28 1E-32 265.4 9.4 182 647-831 10-266 (359)
160 1qcf_A Haematopoetic cell kina 99.9 2.1E-28 7.3E-33 274.5 8.2 174 654-832 183-357 (454)
161 3tt0_A Basic fibroblast growth 99.9 1.1E-27 3.7E-32 262.7 13.1 171 658-831 68-264 (382)
162 3dls_A PAS domain-containing s 99.9 6.5E-28 2.2E-32 259.3 11.0 169 657-831 22-200 (335)
163 3gni_B Strad alpha; kinase fol 99.9 2.1E-27 7.2E-32 261.5 15.3 172 658-832 24-207 (389)
164 2p1m_B Transport inhibitor res 99.9 4.3E-30 1.5E-34 300.0 -6.6 435 85-549 56-545 (594)
165 4e5w_A Tyrosine-protein kinase 99.9 1.2E-27 4.2E-32 253.8 12.8 171 658-831 20-200 (302)
166 2w4o_A Calcium/calmodulin-depe 99.9 9E-28 3.1E-32 259.7 11.9 166 658-831 52-221 (349)
167 1luf_A Muscle-specific tyrosin 99.9 7.7E-28 2.6E-32 260.4 11.3 172 657-831 45-247 (343)
168 1opk_A P150, C-ABL, proto-onco 99.9 7.6E-28 2.6E-32 272.6 11.5 171 658-832 219-391 (495)
169 1u5q_A Serine/threonine protei 99.9 1.1E-27 3.8E-32 258.6 12.2 164 659-831 54-221 (348)
170 3pfq_A PKC-B, PKC-beta, protei 99.9 1.8E-27 6.3E-32 278.4 14.5 171 657-832 339-514 (674)
171 3i6u_A CDS1, serine/threonine- 99.9 2.6E-27 9E-32 262.5 14.9 170 656-832 132-313 (419)
172 2h34_A Serine/threonine-protei 99.9 2.4E-27 8.2E-32 252.2 13.9 172 657-832 32-207 (309)
173 3kfa_A Tyrosine-protein kinase 99.9 4.4E-28 1.5E-32 255.4 7.9 172 656-831 10-183 (288)
174 1qpc_A LCK kinase; alpha beta 99.9 6.1E-28 2.1E-32 253.0 9.0 170 657-831 11-181 (279)
175 3oz6_A Mitogen-activated prote 99.9 1.9E-27 6.7E-32 261.5 13.4 170 657-832 7-202 (388)
176 3lb7_A RAF proto-oncogene seri 99.9 1.8E-27 6.3E-32 252.6 12.6 168 658-831 35-205 (307)
177 3q4u_A Activin receptor type-1 99.9 2.2E-27 7.4E-32 251.8 13.1 168 658-831 7-188 (301)
178 4agu_A Cyclin-dependent kinase 99.9 2.2E-27 7.4E-32 253.0 13.2 169 658-831 2-173 (311)
179 3lxl_A Tyrosine-protein kinase 99.9 1.6E-27 5.6E-32 255.8 12.2 171 658-831 22-201 (327)
180 2z62_A TOLL-like receptor 4, v 99.9 1.7E-26 5.7E-31 241.5 19.5 225 299-528 12-241 (276)
181 2a2a_A Death-associated protei 99.9 2.6E-27 9E-32 253.5 13.7 168 658-831 11-189 (321)
182 2ac3_A MAP kinase-interacting 99.9 2.6E-27 8.7E-32 253.1 13.6 170 658-831 11-192 (316)
183 2qr7_A Ribosomal protein S6 ki 99.9 2.2E-27 7.7E-32 255.4 13.0 167 657-832 20-192 (342)
184 3fdn_A Serine/threonine-protei 99.9 2.3E-27 7.8E-32 248.6 12.8 167 658-831 8-178 (279)
185 3l9p_A Anaplastic lymphoma kin 99.9 6.7E-28 2.3E-32 262.6 8.8 171 658-831 70-257 (367)
186 2eue_A Carbon catabolite derep 99.9 2.4E-27 8.2E-32 247.9 12.7 167 658-831 12-182 (275)
187 2y7j_A Phosphorylase B kinase 99.9 3.8E-27 1.3E-31 256.4 14.6 173 653-831 88-270 (365)
188 2rku_A Serine/threonine-protei 99.9 4.4E-27 1.5E-31 248.4 14.6 169 658-831 14-186 (294)
189 3is5_A Calcium-dependent prote 99.9 2.2E-27 7.5E-32 249.4 12.2 169 658-831 21-197 (285)
190 3oja_A Leucine-rich immune mol 99.9 8E-28 2.7E-32 271.6 9.3 235 46-302 35-270 (487)
191 2owb_A Serine/threonine-protei 99.9 4.1E-27 1.4E-31 253.5 14.4 169 658-831 40-212 (335)
192 3mtl_A Cell division protein k 99.9 8.6E-28 2.9E-32 257.4 9.0 168 659-831 2-171 (324)
193 3kk8_A Calcium/calmodulin depe 99.9 5.1E-27 1.7E-31 246.6 14.6 168 658-831 5-178 (284)
194 3hko_A Calcium/calmodulin-depe 99.9 1.1E-27 3.8E-32 259.3 9.8 176 653-831 20-245 (345)
195 2o6q_A Variable lymphocyte rec 99.9 4E-26 1.4E-30 237.6 21.1 207 344-553 17-223 (270)
196 2ivs_A Proto-oncogene tyrosine 99.9 2.7E-27 9.2E-32 252.7 12.5 171 658-831 22-223 (314)
197 2p1m_B Transport inhibitor res 99.9 4.1E-30 1.4E-34 300.2 -10.2 441 47-523 45-543 (594)
198 4f0f_A Serine/threonine-protei 99.9 6.9E-27 2.3E-31 246.0 15.4 166 658-832 18-198 (287)
199 4eut_A Serine/threonine-protei 99.9 2.1E-27 7.3E-32 261.7 12.0 169 658-831 8-186 (396)
200 1ua2_A CAK, cell division prot 99.9 1.3E-27 4.6E-32 258.5 10.2 171 656-831 7-183 (346)
201 3ttj_A Mitogen-activated prote 99.9 2.2E-27 7.4E-32 266.1 12.2 166 658-832 61-235 (464)
202 3mwu_A Calmodulin-domain prote 99.9 3.8E-27 1.3E-31 267.1 14.3 170 657-832 20-195 (486)
203 3llt_A Serine/threonine kinase 99.9 2.5E-27 8.6E-32 258.1 12.4 178 646-832 22-231 (360)
204 3dbq_A Dual specificity protei 99.9 2.1E-27 7.1E-32 256.7 11.5 169 658-832 8-181 (343)
205 1csn_A Casein kinase-1; phosph 99.9 5.9E-27 2E-31 248.0 14.6 168 658-831 9-189 (298)
206 3mdy_A Bone morphogenetic prot 99.9 5.5E-27 1.9E-31 253.0 14.6 168 656-832 34-218 (337)
207 2yex_A Serine/threonine-protei 99.9 5.7E-27 2E-31 245.1 14.3 172 657-832 5-179 (276)
208 1rjb_A FL cytokine receptor; k 99.9 2.7E-27 9.1E-32 256.2 12.1 172 657-831 43-245 (344)
209 2buj_A Serine/threonine-protei 99.9 5.4E-27 1.9E-31 250.7 14.2 172 658-832 28-215 (317)
210 1x8b_A WEE1HU, WEE1-like prote 99.9 5E-27 1.7E-31 247.2 13.5 167 657-831 9-201 (289)
211 3g33_A Cell division protein k 99.9 6.4E-27 2.2E-31 249.0 14.4 170 657-832 7-191 (308)
212 2pvf_A Fibroblast growth facto 99.9 4.4E-27 1.5E-31 253.2 13.4 171 658-831 34-230 (334)
213 1fmk_A C-SRC, P60-SRC, tyrosin 99.9 1.3E-27 4.5E-32 267.7 9.6 170 657-831 182-352 (452)
214 2zmd_A Dual specificity protei 99.9 3.7E-27 1.3E-31 258.7 12.9 168 659-832 56-228 (390)
215 1nxk_A MAP kinase-activated pr 99.9 5.7E-27 1.9E-31 258.0 14.3 165 658-832 60-235 (400)
216 3lij_A Calcium/calmodulin depe 99.9 4.1E-27 1.4E-31 267.1 13.5 169 658-832 36-210 (494)
217 1k9a_A Carboxyl-terminal SRC k 99.9 4.4E-27 1.5E-31 263.3 13.4 165 657-831 191-357 (450)
218 2h6d_A 5'-AMP-activated protei 99.9 7.1E-27 2.4E-31 244.4 14.1 169 658-832 10-182 (276)
219 3pg1_A Mitogen-activated prote 99.9 3.9E-27 1.3E-31 256.8 12.6 177 649-831 12-204 (362)
220 2jam_A Calcium/calmodulin-depe 99.9 6.9E-27 2.4E-31 248.2 14.2 168 658-832 8-179 (304)
221 3q5i_A Protein kinase; CDPK, m 99.9 7.1E-27 2.4E-31 265.9 15.0 170 657-832 34-220 (504)
222 1zy4_A Serine/threonine-protei 99.9 4.1E-27 1.4E-31 249.8 12.1 171 657-831 4-201 (303)
223 3cc6_A Protein tyrosine kinase 99.9 2.9E-27 1E-31 248.0 10.8 170 658-831 11-185 (281)
224 2w1i_A JAK2; chromosomal rearr 99.9 5.4E-27 1.8E-31 251.6 13.0 171 658-831 40-219 (326)
225 3mi9_A Cell division protein k 99.9 4.6E-27 1.6E-31 255.0 12.5 170 658-831 16-199 (351)
226 3qup_A Tyrosine-protein kinase 99.9 2.9E-27 1E-31 253.4 10.8 172 657-831 21-210 (323)
227 1t46_A HOMO sapiens V-KIT hard 99.9 3.7E-27 1.3E-31 251.5 11.4 171 658-831 22-218 (313)
228 3nyv_A Calmodulin-domain prote 99.9 4E-27 1.4E-31 267.0 12.3 169 658-832 25-200 (484)
229 2j7t_A Serine/threonine-protei 99.9 1.7E-27 5.7E-32 252.8 8.6 171 657-831 17-188 (302)
230 2vgo_A Serine/threonine-protei 99.9 8E-27 2.7E-31 245.1 13.8 167 658-831 13-183 (284)
231 3gbz_A Kinase, CMGC CDK; ssgci 99.9 2.5E-27 8.4E-32 254.5 9.9 170 656-831 31-208 (329)
232 3kmu_A ILK, integrin-linked ki 99.9 7.1E-27 2.4E-31 243.7 13.0 165 658-832 9-180 (271)
233 1p4o_A Insulin-like growth fac 99.9 1.5E-27 5.2E-32 255.5 8.1 178 651-831 17-211 (322)
234 1cm8_A Phosphorylated MAP kina 99.9 5.1E-27 1.7E-31 255.6 12.3 164 658-831 24-196 (367)
235 3op5_A Serine/threonine-protei 99.9 3E-27 1E-31 257.6 10.5 171 658-832 34-233 (364)
236 2pml_X PFPK7, Ser/Thr protein 99.9 6.2E-27 2.1E-31 253.8 12.8 168 658-832 30-222 (348)
237 3f66_A Hepatocyte growth facto 99.9 6E-27 2E-31 248.0 12.4 171 658-831 24-203 (298)
238 3poz_A Epidermal growth factor 99.9 3E-27 1E-31 253.6 10.2 170 658-831 14-190 (327)
239 1u59_A Tyrosine-protein kinase 99.9 7.3E-27 2.5E-31 245.8 12.9 170 658-831 8-184 (287)
240 3bhy_A Death-associated protei 99.9 8.8E-27 3E-31 244.7 13.3 168 658-831 4-182 (283)
241 3og7_A AKAP9-BRAF fusion prote 99.9 3.8E-27 1.3E-31 248.2 10.5 168 658-831 23-193 (289)
242 2xir_A Vascular endothelial gr 99.9 2.9E-27 1E-31 252.6 9.7 181 648-831 16-221 (316)
243 3g2f_A Bone morphogenetic prot 99.9 6.5E-27 2.2E-31 252.3 12.4 166 658-832 12-200 (336)
244 3lxp_A Non-receptor tyrosine-p 99.9 1.6E-26 5.3E-31 247.0 15.0 166 661-831 33-208 (318)
245 3a7i_A MST3 kinase, serine/thr 99.9 1.5E-26 5.1E-31 245.5 14.8 168 658-831 21-190 (303)
246 1mqb_A Ephrin type-A receptor 99.9 7.5E-27 2.6E-31 251.1 12.6 171 658-831 43-221 (333)
247 4aaa_A Cyclin-dependent kinase 99.9 6.2E-27 2.1E-31 251.7 11.9 169 658-831 24-195 (331)
248 1t4h_A Serine/threonine-protei 99.9 2.3E-26 8E-31 242.3 16.1 167 659-832 26-202 (290)
249 1phk_A Phosphorylase kinase; g 99.9 1.3E-26 4.6E-31 245.3 14.2 169 657-831 15-194 (298)
250 2clq_A Mitogen-activated prote 99.9 2E-26 7E-31 243.5 15.4 169 659-831 22-194 (295)
251 3eqc_A Dual specificity mitoge 99.9 4.9E-27 1.7E-31 255.7 10.9 167 658-831 32-201 (360)
252 3dtc_A Mitogen-activated prote 99.9 5.8E-27 2E-31 244.4 11.0 165 658-831 6-185 (271)
253 3com_A Serine/threonine-protei 99.9 1.2E-26 4E-31 247.7 13.5 169 657-831 27-196 (314)
254 2i1m_A Macrophage colony-stimu 99.9 2.6E-27 8.9E-32 255.0 8.4 174 655-831 42-237 (333)
255 3gxj_A TGF-beta receptor type- 99.9 1.4E-27 4.6E-32 253.6 5.8 169 658-832 2-184 (303)
256 2h8h_A Proto-oncogene tyrosine 99.9 3E-27 1E-31 270.2 8.9 171 656-831 264-435 (535)
257 2wqm_A Serine/threonine-protei 99.9 1E-26 3.6E-31 247.6 12.6 171 657-831 30-207 (310)
258 3c1x_A Hepatocyte growth facto 99.9 4.7E-27 1.6E-31 255.9 10.0 170 659-831 89-267 (373)
259 3kex_A Receptor tyrosine-prote 99.9 3.9E-27 1.3E-31 252.5 9.0 170 658-831 12-188 (325)
260 2a19_B Interferon-induced, dou 99.9 1.1E-26 3.9E-31 243.9 11.5 166 657-831 9-192 (284)
261 3eb0_A Putative uncharacterize 99.9 1.9E-26 6.6E-31 253.0 13.7 166 656-831 4-212 (383)
262 3pls_A Macrophage-stimulating 99.9 1.6E-26 5.4E-31 244.7 12.5 170 659-831 21-199 (298)
263 3byv_A Rhoptry kinase; malaria 99.9 3.1E-27 1.1E-31 258.7 7.3 166 658-832 72-274 (377)
264 2x7f_A TRAF2 and NCK-interacti 99.9 5.6E-27 1.9E-31 251.6 8.7 177 650-831 15-200 (326)
265 2ycf_A Serine/threonine-protei 99.9 1.2E-26 4E-31 248.6 11.1 167 658-831 9-187 (322)
266 3lzb_A Epidermal growth factor 99.9 1.3E-26 4.6E-31 248.3 11.5 170 658-831 14-190 (327)
267 3ll6_A Cyclin G-associated kin 99.9 2.8E-26 9.5E-31 247.4 13.9 171 658-832 27-222 (337)
268 2eva_A TAK1 kinase - TAB1 chim 99.9 1.2E-26 4.2E-31 246.4 10.9 165 658-831 7-174 (307)
269 3qyz_A Mitogen-activated prote 99.9 2.4E-26 8.2E-31 250.5 13.3 168 658-831 26-202 (364)
270 1fvr_A Tyrosine-protein kinase 99.9 1.9E-26 6.6E-31 247.4 12.3 169 658-831 24-212 (327)
271 2vwi_A Serine/threonine-protei 99.9 5.7E-27 2E-31 248.7 8.0 172 657-831 13-197 (303)
272 4azs_A Methyltransferase WBDD; 99.9 7.3E-27 2.5E-31 267.2 9.2 159 666-832 241-411 (569)
273 2ozo_A Tyrosine-protein kinase 99.9 1.6E-26 5.4E-31 268.0 11.8 170 659-832 335-511 (613)
274 1p9a_G Platelet glycoprotein I 99.9 1.7E-25 5.7E-30 234.8 18.5 206 339-551 6-211 (290)
275 3fme_A Dual specificity mitoge 99.9 1.8E-26 6.1E-31 243.3 11.1 168 658-831 6-180 (290)
276 3rfs_A Internalin B, repeat mo 99.9 6.1E-26 2.1E-30 236.4 15.0 180 365-553 61-240 (272)
277 3an0_A Dual specificity mitoge 99.9 1.9E-26 6.5E-31 249.0 11.5 169 657-831 49-224 (340)
278 2o6q_A Variable lymphocyte rec 99.9 4.6E-25 1.6E-29 229.6 21.5 185 344-528 38-222 (270)
279 2r3i_A Cell division protein k 99.9 2.4E-26 8.2E-31 243.5 12.0 169 658-831 2-174 (299)
280 1b6c_B TGF-B superfamily recep 99.9 6E-26 2.1E-30 245.3 15.1 171 655-831 38-222 (342)
281 1xbb_A Tyrosine-protein kinase 99.9 1.5E-26 5E-31 244.0 10.0 170 657-831 14-191 (291)
282 2xrw_A Mitogen-activated prote 99.9 2.9E-26 9.9E-31 250.3 12.7 165 658-831 24-197 (371)
283 3lm5_A Serine/threonine-protei 99.9 2.5E-26 8.5E-31 246.4 11.9 174 653-831 22-204 (327)
284 2w5a_A Serine/threonine-protei 99.9 1E-26 3.6E-31 243.6 8.5 170 658-831 5-187 (279)
285 2v62_A Serine/threonine-protei 99.9 1E-26 3.5E-31 251.5 8.6 169 658-831 36-231 (345)
286 3nsz_A CK II alpha, casein kin 99.9 4.8E-26 1.7E-30 244.8 13.9 162 658-831 35-201 (330)
287 2fst_X Mitogen-activated prote 99.9 1.2E-26 3.9E-31 252.4 9.0 164 658-831 28-200 (367)
288 3brb_A Proto-oncogene tyrosine 99.9 3.6E-26 1.2E-30 243.8 12.7 174 655-831 30-220 (313)
289 2wtk_C Serine/threonine-protei 99.9 6.6E-26 2.2E-30 240.8 14.5 171 657-831 3-182 (305)
290 2j0j_A Focal adhesion kinase 1 99.9 2.5E-26 8.6E-31 267.9 12.0 171 657-831 388-563 (656)
291 4hgt_A Casein kinase I isoform 99.9 4.5E-26 1.5E-30 240.9 12.6 169 657-831 7-186 (296)
292 3rgf_A Cyclin-dependent kinase 99.9 2.2E-26 7.4E-31 254.6 10.2 168 659-832 20-207 (405)
293 3rfs_A Internalin B, repeat mo 99.9 1.9E-25 6.4E-30 232.7 16.5 227 295-535 20-246 (272)
294 2i6l_A Mitogen-activated prote 99.9 5.4E-26 1.8E-30 243.3 12.6 168 658-831 10-195 (320)
295 2yfx_A Tyrosine-protein kinase 99.9 3E-26 1E-30 246.0 10.6 171 658-831 29-216 (327)
296 1byg_A CSK, protein (C-termina 99.9 1.6E-26 5.6E-31 241.9 8.0 164 658-831 20-185 (278)
297 3kvw_A DYRK2, dual specificity 99.9 7.6E-26 2.6E-30 251.4 13.7 166 658-832 96-271 (429)
298 1u46_A ACK-1, activated CDC42 99.9 2.6E-26 9E-31 242.1 9.4 170 658-831 17-195 (291)
299 4e7w_A Glycogen synthase kinas 99.9 3.8E-26 1.3E-30 251.2 11.0 164 658-831 39-212 (394)
300 3uzp_A CKI-delta, CKID, casein 99.9 7.9E-26 2.7E-30 239.1 13.0 168 658-831 8-186 (296)
301 2jii_A Serine/threonine-protei 99.9 1.6E-26 5.3E-31 250.8 7.7 165 658-831 41-239 (352)
302 2b9h_A MAP kinase FUS3, mitoge 99.9 7.3E-26 2.5E-30 245.8 12.9 168 658-831 10-193 (353)
303 3q60_A ROP5B; pseudokinase, tr 99.9 2.5E-26 8.6E-31 251.0 8.9 167 658-832 61-263 (371)
304 1j1b_A Glycogen synthase kinas 99.9 6.8E-26 2.3E-30 251.3 12.3 163 659-831 54-227 (420)
305 2wei_A Calmodulin-domain prote 99.9 8.5E-26 2.9E-30 237.6 12.4 169 657-831 20-194 (287)
306 4fl3_A Tyrosine-protein kinase 99.9 5.5E-26 1.9E-30 264.0 11.8 163 665-832 375-544 (635)
307 3sv0_A Casein kinase I-like; t 99.9 1.4E-25 4.9E-30 251.2 14.1 168 658-831 6-184 (483)
308 2pzi_A Probable serine/threoni 99.9 6.3E-26 2.2E-30 267.4 11.2 163 658-832 79-249 (681)
309 4exu_A Mitogen-activated prote 99.9 1E-25 3.5E-30 246.0 11.8 163 658-831 41-212 (371)
310 3p23_A Serine/threonine-protei 99.9 5.9E-26 2E-30 252.0 9.8 168 658-832 23-198 (432)
311 2iwi_A Serine/threonine-protei 99.9 2.6E-26 8.9E-31 244.7 6.6 172 653-831 25-209 (312)
312 1wak_A Serine/threonine-protei 99.9 9.9E-26 3.4E-30 249.1 11.1 166 658-832 36-265 (397)
313 3aln_A Dual specificity mitoge 99.9 3.3E-25 1.1E-29 237.9 14.8 169 658-832 21-197 (327)
314 1blx_A Cyclin-dependent kinase 99.9 1.3E-25 4.3E-30 241.1 11.5 169 657-831 9-190 (326)
315 1p9a_G Platelet glycoprotein I 99.9 2.3E-24 7.8E-29 226.2 20.5 205 290-526 6-210 (290)
316 2y4i_B KSR2, HKSR2, kinase sup 99.9 1.5E-26 5.2E-31 247.4 3.8 173 653-831 27-205 (319)
317 3e3p_A Protein kinase, putativ 99.9 2.9E-25 9.8E-30 241.8 13.7 175 652-831 16-202 (360)
318 1z57_A Dual specificity protei 99.9 2.7E-25 9.1E-30 239.9 12.7 165 658-831 13-205 (339)
319 3cek_A Dual specificity protei 99.9 1.7E-25 5.9E-30 238.5 11.0 169 657-831 26-199 (313)
320 3coi_A Mitogen-activated prote 99.9 1.8E-25 6.2E-30 242.6 11.0 163 658-831 23-194 (353)
321 4glp_A Monocyte differentiatio 99.9 3.9E-25 1.3E-29 235.1 13.2 203 341-549 89-308 (310)
322 3fhr_A MAP kinase-activated pr 99.9 5.2E-25 1.8E-29 236.9 14.2 165 658-832 27-201 (336)
323 3a99_A Proto-oncogene serine/t 99.9 1.1E-25 3.6E-30 240.7 8.7 169 656-831 40-219 (320)
324 2rio_A Serine/threonine-protei 99.9 2.6E-25 8.7E-30 247.8 10.8 166 659-831 15-203 (434)
325 3qa8_A MGC80376 protein; kinas 99.9 2E-25 6.9E-30 255.0 9.8 170 658-832 13-195 (676)
326 2dyl_A Dual specificity mitoge 99.9 4.8E-25 1.6E-29 235.6 10.9 168 658-831 24-195 (318)
327 3m19_A Variable lymphocyte rec 99.9 5.9E-24 2E-28 218.5 18.1 180 344-550 15-194 (251)
328 2vx3_A Dual specificity tyrosi 99.9 1.4E-24 4.9E-29 238.0 13.9 169 657-832 52-230 (382)
329 3goz_A Leucine-rich repeat-con 99.9 5.3E-26 1.8E-30 247.3 2.5 228 223-451 4-265 (362)
330 2eu9_A Dual specificity protei 99.9 1.1E-24 3.6E-29 236.8 12.5 166 658-832 18-211 (355)
331 2xwt_C Thyrotropin receptor; s 99.9 3E-24 1E-28 219.1 14.5 196 344-545 32-236 (239)
332 3en9_A Glycoprotease, O-sialog 99.9 3.5E-25 1.2E-29 251.9 7.0 156 662-832 339-508 (540)
333 3goz_A Leucine-rich repeat-con 99.9 5.5E-26 1.9E-30 247.3 0.3 258 269-531 2-304 (362)
334 3m19_A Variable lymphocyte rec 99.9 1.4E-23 4.7E-28 215.8 18.2 180 320-526 15-194 (251)
335 1q8y_A SR protein kinase; tran 99.9 8.8E-25 3E-29 239.2 9.8 166 658-832 18-207 (373)
336 2xwt_C Thyrotropin receptor; s 99.9 6.9E-24 2.4E-28 216.4 15.2 197 320-522 32-237 (239)
337 4glp_A Monocyte differentiatio 99.9 3.7E-24 1.3E-28 227.6 12.4 201 320-525 92-308 (310)
338 2ca6_A RAN GTPase-activating p 99.9 2.9E-26 9.9E-31 252.0 -5.6 250 258-526 25-318 (386)
339 2ca6_A RAN GTPase-activating p 99.9 6.6E-26 2.2E-30 249.2 -4.0 246 286-552 24-320 (386)
340 1h6u_A Internalin H; cell adhe 99.9 2.3E-23 7.7E-28 220.9 14.4 193 341-549 39-231 (308)
341 2ast_B S-phase kinase-associat 99.9 9.7E-25 3.3E-29 235.2 3.4 250 296-553 49-311 (336)
342 3uqc_A Probable conserved tran 99.9 2.4E-23 8.1E-28 218.2 13.4 144 659-808 31-178 (286)
343 1h6u_A Internalin H; cell adhe 99.9 6E-23 2.1E-27 217.6 16.0 213 265-525 19-231 (308)
344 4ay9_X Follicle-stimulating ho 99.9 5.1E-23 1.8E-27 222.6 15.5 202 49-281 13-218 (350)
345 4ay9_X Follicle-stimulating ho 99.9 1.1E-22 3.8E-27 220.0 16.8 243 297-548 12-259 (350)
346 3m2w_A MAP kinase-activated pr 99.9 1E-22 3.4E-27 215.4 15.7 148 658-813 16-174 (299)
347 2ast_B S-phase kinase-associat 99.9 6.2E-24 2.1E-28 228.9 5.6 252 73-340 50-314 (336)
348 3dzo_A Rhoptry kinase domain; 99.9 1.5E-23 5.1E-28 231.9 7.3 166 658-832 77-279 (413)
349 1zar_A RIO2 kinase; serine kin 99.9 8.5E-23 2.9E-27 212.7 10.1 141 653-809 84-242 (282)
350 2o6s_A Variable lymphocyte rec 99.9 1.3E-21 4.6E-26 194.8 17.2 132 344-475 29-160 (208)
351 2o6s_A Variable lymphocyte rec 99.9 7.8E-22 2.7E-26 196.5 14.8 178 346-533 10-187 (208)
352 3cvr_A Invasion plasmid antige 99.9 1.5E-21 5E-26 221.8 17.0 189 295-536 60-255 (571)
353 3cvr_A Invasion plasmid antige 99.9 2.6E-21 9E-26 219.7 15.3 182 344-553 60-248 (571)
354 2xot_A Amphoterin-induced prot 99.9 1.4E-21 4.9E-26 212.1 12.5 180 370-552 21-206 (361)
355 2v70_A SLIT-2, SLIT homolog 2 99.9 7.7E-22 2.6E-26 197.9 9.0 136 417-552 34-170 (220)
356 2v9t_B SLIT homolog 2 protein 99.8 6.9E-21 2.3E-25 191.0 13.7 137 416-552 33-169 (220)
357 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-20 6.5E-25 187.8 13.3 156 370-528 14-170 (220)
358 3e6j_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 187.2 15.0 156 369-552 21-176 (229)
359 1h6t_A Internalin B; cell adhe 99.8 2E-20 6.9E-25 196.3 12.6 171 341-525 44-214 (291)
360 2v9t_B SLIT homolog 2 protein 99.8 3.7E-20 1.3E-24 185.6 13.8 154 370-526 14-167 (220)
361 3e6j_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 181.8 15.9 157 344-528 20-176 (229)
362 1h6t_A Internalin B; cell adhe 99.8 7.8E-20 2.7E-24 191.8 13.0 151 339-501 64-214 (291)
363 1m9s_A Internalin B; cell inva 99.8 9.6E-20 3.3E-24 209.4 14.2 175 340-528 40-214 (605)
364 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.7E-24 197.2 13.4 156 345-500 41-202 (361)
365 1m9s_A Internalin B; cell inva 99.8 2.2E-19 7.6E-24 206.4 16.3 171 263-453 41-211 (605)
366 1xeu_A Internalin C; cellular 99.8 4.6E-20 1.6E-24 190.4 6.6 171 341-526 17-187 (263)
367 1dce_A Protein (RAB geranylger 99.8 3.9E-21 1.3E-25 219.7 -3.3 204 18-248 346-567 (567)
368 1dce_A Protein (RAB geranylger 99.8 8.1E-22 2.8E-26 225.3 -9.6 200 320-542 350-567 (567)
369 1w8a_A SLIT protein; signaling 99.8 1.3E-18 4.4E-23 170.4 13.8 156 394-553 11-167 (192)
370 1xeu_A Internalin C; cellular 99.8 2.7E-19 9.1E-24 184.6 8.5 169 320-503 20-188 (263)
371 4b8c_D Glucose-repressible alc 99.8 1.5E-19 5E-24 213.3 7.4 228 294-553 173-409 (727)
372 3sb4_A Hypothetical leucine ri 99.8 3.3E-19 1.1E-23 190.9 9.3 222 216-469 100-327 (329)
373 1w8a_A SLIT protein; signaling 99.8 2.5E-19 8.5E-24 175.5 7.4 155 418-575 11-166 (192)
374 4ezg_A Putative uncharacterize 99.8 6.8E-19 2.3E-23 173.4 10.5 151 366-524 43-194 (197)
375 1zth_A RIO1 serine protein kin 99.8 5.2E-19 1.8E-23 181.9 9.7 141 660-812 48-222 (258)
376 4ezg_A Putative uncharacterize 99.8 7.6E-19 2.6E-23 173.0 9.5 155 387-549 40-195 (197)
377 4b8c_D Glucose-repressible alc 99.8 2.6E-19 9E-24 211.2 6.7 190 325-525 207-405 (727)
378 3sb4_A Hypothetical leucine ri 99.7 3.1E-19 1E-23 191.2 3.4 102 414-517 225-327 (329)
379 2wfh_A SLIT homolog 2 protein 99.7 1.1E-17 3.7E-22 163.8 8.2 112 440-552 32-143 (193)
380 4gyi_A RIO2 kinase; protein ki 99.7 1.2E-17 4.2E-22 177.5 5.9 143 657-811 93-267 (397)
381 2ell_A Acidic leucine-rich nuc 99.7 3.6E-17 1.2E-21 156.5 8.5 42 482-523 115-159 (168)
382 4fdw_A Leucine rich hypothetic 99.7 6.2E-16 2.1E-20 168.9 19.3 258 230-524 125-383 (401)
383 2ell_A Acidic leucine-rich nuc 99.7 8.1E-17 2.8E-21 154.1 9.9 133 343-500 24-160 (168)
384 2o6r_A Variable lymphocyte rec 99.7 1.3E-16 4.6E-21 154.0 11.4 131 393-526 9-139 (177)
385 4fdw_A Leucine rich hypothetic 99.7 1.6E-15 5.5E-20 165.6 21.2 263 167-450 113-381 (401)
386 4fs7_A Uncharacterized protein 99.7 4.5E-15 1.6E-19 162.9 23.4 334 107-515 59-392 (394)
387 2je0_A Acidic leucine-rich nuc 99.7 7.4E-17 2.5E-21 150.9 7.6 108 391-500 17-126 (149)
388 2je0_A Acidic leucine-rich nuc 99.7 8.6E-17 2.9E-21 150.5 7.4 129 414-544 16-149 (149)
389 2o6r_A Variable lymphocyte rec 99.7 4.9E-16 1.7E-20 150.0 12.9 134 417-553 9-142 (177)
390 2wfh_A SLIT homolog 2 protein 99.7 4.8E-16 1.6E-20 152.0 12.3 110 416-526 32-141 (193)
391 4fs7_A Uncharacterized protein 99.6 9E-15 3.1E-19 160.5 22.5 336 130-540 58-393 (394)
392 1a9n_A U2A', U2A'; complex (nu 99.6 6.2E-16 2.1E-20 149.1 6.4 123 1-132 1-126 (176)
393 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-15 4.2E-20 146.9 7.5 105 440-548 43-153 (176)
394 1ds9_A Outer arm dynein; leuci 99.6 1.6E-17 5.4E-22 163.7 -6.2 161 363-548 14-185 (198)
395 1ds9_A Outer arm dynein; leuci 99.6 2.2E-17 7.6E-22 162.6 -6.6 162 339-525 14-186 (198)
396 3g39_A Variable lymphocyte rec 99.6 7.4E-15 2.5E-19 140.4 9.7 108 442-552 12-119 (170)
397 2r9u_A Variable lymphocyte rec 99.5 2.2E-14 7.5E-19 137.5 9.8 107 443-552 16-122 (174)
398 4gt6_A Cell surface protein; l 99.5 1.5E-12 5.1E-17 142.8 23.8 88 112-201 56-147 (394)
399 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 132.1 12.7 108 418-528 12-119 (170)
400 2r9u_A Variable lymphocyte rec 99.4 2.2E-13 7.5E-18 130.5 10.6 41 460-500 78-118 (174)
401 4gt6_A Cell surface protein; l 99.4 9.5E-12 3.3E-16 136.3 23.6 114 85-201 53-170 (394)
402 3un9_A NLR family member X1; l 99.3 6.1E-15 2.1E-19 159.5 -8.6 73 460-532 180-260 (372)
403 3tm0_A Aminoglycoside 3'-phosp 99.3 2.6E-12 8.8E-17 132.5 11.1 147 655-808 10-213 (263)
404 2ifg_A High affinity nerve gro 99.3 5.4E-13 1.8E-17 143.8 5.9 132 419-553 12-146 (347)
405 2ifg_A High affinity nerve gro 99.3 2E-12 6.8E-17 139.3 9.7 107 443-552 12-120 (347)
406 3un9_A NLR family member X1; l 99.3 1.6E-14 5.4E-19 156.2 -6.8 112 143-254 155-283 (372)
407 4h09_A Hypothetical leucine ri 99.2 1.2E-09 4E-14 119.1 22.5 59 138-199 41-99 (379)
408 1nd4_A Aminoglycoside 3'-phosp 99.2 2.5E-11 8.4E-16 125.0 8.0 139 659-809 20-215 (264)
409 4h09_A Hypothetical leucine ri 99.2 3.8E-09 1.3E-13 115.0 24.8 123 360-486 233-355 (379)
410 3dxp_A Putative acyl-COA dehyd 99.0 5.8E-10 2E-14 120.4 10.2 142 663-808 42-248 (359)
411 2ra8_A Uncharacterized protein 98.9 2.7E-10 9.3E-15 121.8 3.6 158 385-546 166-341 (362)
412 2ra8_A Uncharacterized protein 98.9 6.4E-10 2.2E-14 118.9 4.2 140 407-549 164-321 (362)
413 3r70_A Aminoglycoside phosphot 98.7 8.1E-08 2.8E-12 101.6 11.8 137 660-809 38-238 (320)
414 3rw6_A Nuclear RNA export fact 98.6 1.1E-08 3.7E-13 103.6 1.3 105 435-541 137-257 (267)
415 3sg8_A APH(2'')-ID; antibiotic 98.6 1.1E-07 3.8E-12 99.8 9.1 137 664-809 25-224 (304)
416 3tdw_A Gentamicin resistance p 98.5 7.8E-07 2.7E-11 93.2 12.3 137 664-809 24-225 (306)
417 4gkh_A Aminoglycoside 3'-phosp 98.4 1.9E-06 6.4E-11 88.7 13.8 137 665-809 30-224 (272)
418 3rw6_A Nuclear RNA export fact 98.4 1E-07 3.5E-12 96.4 3.5 104 17-125 137-257 (267)
419 3d1u_A Putative fructosamine-3 98.4 1.1E-06 3.7E-11 91.0 11.2 76 663-742 19-97 (288)
420 1io0_A Tropomodulin; LRR prote 98.4 3E-08 1E-12 95.5 -0.6 120 409-548 30-164 (185)
421 1io0_A Tropomodulin; LRR prote 98.4 3E-08 1E-12 95.5 -0.9 94 336-429 29-137 (185)
422 3ovc_A Hygromycin-B 4-O-kinase 98.3 1.1E-06 3.8E-11 94.3 9.4 142 662-809 44-244 (362)
423 3ats_A Putative uncharacterize 98.2 1.2E-06 4.2E-11 94.1 6.9 80 664-743 25-121 (357)
424 2olc_A MTR kinase, methylthior 98.0 1.8E-05 6.2E-10 86.3 10.9 75 664-740 35-120 (397)
425 2q83_A YTAA protein; 2635576, 98.0 3.2E-05 1.1E-09 82.4 11.5 139 665-808 38-252 (346)
426 3e4g_A ATP synthase subunit S, 97.8 5.9E-06 2E-10 77.3 2.6 83 344-426 62-150 (176)
427 3e4g_A ATP synthase subunit S, 97.8 6.4E-06 2.2E-10 77.0 2.7 84 119-202 61-150 (176)
428 3jr1_A Putative fructosamine-3 97.7 0.00029 9.8E-09 73.3 12.8 136 664-804 41-232 (312)
429 2pyw_A Uncharacterized protein 97.6 0.00021 7.4E-09 78.2 10.7 73 664-739 39-122 (420)
430 3f7w_A Putative fructosamine-3 97.5 0.00039 1.3E-08 71.8 11.8 78 660-741 16-96 (288)
431 2ppq_A HSK, HK, homoserine kin 97.5 0.00021 7.2E-09 75.2 8.6 157 649-808 7-217 (322)
432 3csv_A Aminoglycoside phosphot 97.3 0.0013 4.4E-08 69.5 11.9 140 665-809 24-218 (333)
433 3dxq_A Choline/ethanolamine ki 97.3 0.00067 2.3E-08 70.6 9.4 138 663-809 22-203 (301)
434 1zyl_A Hypothetical protein YI 97.2 0.0014 4.8E-08 69.0 11.7 140 665-808 32-223 (328)
435 3rfe_A Platelet glycoprotein I 97.2 0.00034 1.2E-08 62.3 5.8 60 491-552 12-72 (130)
436 1nw1_A Choline kinase (49.2 KD 97.1 0.00078 2.7E-08 73.7 7.9 72 664-741 78-158 (429)
437 3feg_A Choline/ethanolamine ki 97.1 0.0013 4.5E-08 70.2 9.4 139 665-808 56-254 (379)
438 1pgv_A TMD-1, tropomodulin TMD 97.1 7.2E-05 2.5E-09 71.3 -0.4 17 238-254 38-55 (197)
439 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00015 5.1E-09 69.1 1.3 87 339-425 37-136 (197)
440 2qg7_A Ethanolamine kinase PV0 96.8 0.0027 9.2E-08 69.7 9.5 74 664-742 113-188 (458)
441 3c5i_A Choline kinase; choline 96.8 0.0016 5.4E-08 69.9 7.0 72 665-741 39-120 (369)
442 3i1a_A Spectinomycin phosphotr 96.6 0.013 4.3E-07 61.9 12.5 33 777-809 205-237 (339)
443 3rfe_A Platelet glycoprotein I 96.5 0.0042 1.4E-07 55.1 6.6 37 242-278 32-68 (130)
444 3f2s_A CK, chetk-alpha, cholin 96.4 0.0066 2.3E-07 65.1 8.7 140 665-808 58-280 (401)
445 3mes_A Choline kinase; malaria 95.8 0.011 3.9E-07 63.9 6.8 138 665-808 76-291 (424)
446 3g15_A CK, chetk-alpha, cholin 93.4 0.16 5.5E-06 54.7 8.4 30 779-808 245-280 (401)
447 3cxl_A N-chimerin; SH2, RHO-GA 74.3 0.49 1.7E-05 51.8 -0.9 61 662-725 145-214 (463)
448 4ano_A ESSB; membrane protein, 73.5 9.8 0.00033 36.3 8.0 86 713-810 48-135 (219)
449 4ann_A ESSB; membrane protein, 71.4 7.4 0.00025 37.0 6.6 88 713-811 43-131 (215)
450 2x6h_A GH13170P, VPS34, phosph 52.2 1.6E+02 0.0054 33.4 13.9 45 756-807 529-575 (696)
451 2lz0_A Uncharacterized protein 49.2 27 0.00091 28.6 5.4 44 404-448 9-52 (100)
452 3ls8_A Phosphatidylinositol 3- 47.2 2.1E+02 0.0073 31.8 13.7 46 755-807 454-501 (614)
453 2lz0_A Uncharacterized protein 45.0 23 0.0008 28.9 4.4 46 228-274 7-52 (100)
454 2jwa_A Receptor tyrosine-prote 42.5 5.3 0.00018 27.0 0.0 6 622-627 34-39 (44)
455 3eps_A Isocitrate dehydrogenas 39.9 1.6E+02 0.0056 31.8 10.8 149 651-809 298-482 (578)
456 1cja_A Protein (actin-fragmin 32.9 58 0.002 33.1 5.9 140 661-809 71-238 (342)
457 2yle_A Protein spire homolog 1 31.6 59 0.002 31.0 5.3 61 740-802 33-93 (229)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-78 Score=726.90 Aligned_cols=572 Identities=33% Similarity=0.530 Sum_probs=429.3
Q ss_pred CCCCcceeccCccccCccccCeEeccCCccccCCCc--cccccccCcEEEccCCcCCCCCCCcc-cCccccccccccccc
Q 003301 4 LSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQ--ELGNLAELELVSLTNNFLSGTIPSTI-FNLSSLSTGMDFSNN 80 (832)
Q Consensus 4 l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~l~~~L~ls~n 80 (832)
++.|.+. .+|+.++++++|++|||++|+++|.+|. .++.+++|++|+|++|.+.+.+|..+ +.+++| ++||+++|
T Consensus 84 ~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L-~~L~Ls~n 161 (768)
T 3rgz_A 84 LSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL-EVLDLSAN 161 (768)
T ss_dssp CTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC-SEEECCSS
T ss_pred CcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC-CEEECCCC
Confidence 3334433 2446777777777777777777776776 67777777777777777776666655 666666 77777777
Q ss_pred ccccCCChhh--hhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccc
Q 003301 81 SLTGSLPDDM--CRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGE 158 (832)
Q Consensus 81 ~l~~~lp~~~--~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~ 158 (832)
++++..|..+ +.++++|++|++++|++++..|. ..+++|++|+|++|++++.+|. ++++++|++|+|++|++++.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 7775555442 34566666666666666654432 5566666666666666655554 66666666666666666666
Q ss_pred cCccccCccccceecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCccc
Q 003301 159 IPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIF 238 (832)
Q Consensus 159 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 238 (832)
+|..|+++++|++|++++|++.+.+|.. .+++|++|++++|.+++.+|..+ ...+++|++|+|++|++++..|..|.
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL-SGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCS-CTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHH-HhhcCcCCEEECcCCcCCCccchHHh
Confidence 6666666666666666666666544443 55556666666666555555543 12235555555555555555555555
Q ss_pred CCCCccEEEcCCCcCcccCCcc-ccCccccceeecccccCCC-CCCcc-------------------cccccccc--CCC
Q 003301 239 NASKLSVLELGENSFSGFIPNT-LGNLRKLEWLRLSYNFLTS-STSEL-------------------SFLSSWAN--CKN 295 (832)
Q Consensus 239 ~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~l~~-~~~~~-------------------~~~~~~~~--l~~ 295 (832)
.+++|++|++++|.+++.+|.. +..+++|++|++++|.++. ++..+ .++..+.. +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 5555555555555555444433 5555555555555555542 12111 12222333 667
Q ss_pred CcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEcc
Q 003301 296 LKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLV 375 (832)
Q Consensus 296 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 375 (832)
|++|++++|.+++.+|..+..+. +|++|++++|++++.+|..+..+++|++|++++|++.+.+|..|..+++|++|+|+
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred ccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 88888888888878888888776 88999999999988888889999999999999999988888889999999999999
Q ss_pred CCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCC
Q 003301 376 NNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSL 455 (832)
Q Consensus 376 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 455 (832)
+|++++.+|..+..+++|++|++++|++++.+|.+|+.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 99999889999999999999999999999999999999999999999999999889999999999999999999988777
Q ss_pred cccc----------------------------------------------------------------------cccccc
Q 003301 456 PEDI----------------------------------------------------------------------GNLKVV 465 (832)
Q Consensus 456 ~~~~----------------------------------------------------------------------~~l~~L 465 (832)
|..+ +.+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 6543 345778
Q ss_pred ceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCC
Q 003301 466 VIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFN 545 (832)
Q Consensus 466 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N 545 (832)
+.|||++|+++|.+|..|+++++|+.|+|++|+++|.+|..|+.+++|++|||++|+++|.+|..+..+++|++|||++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcCCCcccCCCCCCCCcccCCCccCCCCC
Q 003301 546 KLEGEIPRGGPFANFSNRSFMGNDLLCGLAQVQVPVCKSGNS 587 (832)
Q Consensus 546 ~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~~~p~c~~~~~ 587 (832)
+++|.||.++++.++...+|.||+++||.|+. .|.++..
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~---~C~~~~~ 753 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP---RCDPSNA 753 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEESTTSC---CCCSCC-
T ss_pred cccccCCCchhhccCCHHHhcCCchhcCCCCc---CCCCCcc
Confidence 99999999999999999999999999998864 7866443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-72 Score=672.03 Aligned_cols=555 Identities=31% Similarity=0.456 Sum_probs=480.8
Q ss_pred CccCCCCcceec---cCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCC--cccCcccccccc
Q 003301 1 MLSLSFNDLSGA---IPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPS--TIFNLSSLSTGM 75 (832)
Q Consensus 1 ~ldl~~n~~~~~---~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~l~~~L 75 (832)
.|||+++.++|. +|+++++++.|+.++++.+.+. .+|+.|+.+++|++|+|++|.+.|.+|. .++++++| ++|
T Consensus 54 ~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L-~~L 131 (768)
T 3rgz_A 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL-KFL 131 (768)
T ss_dssp EEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC-CEE
T ss_pred EEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC-CEE
Confidence 379999999998 9999999999999999999987 6788999999999999999999999998 99999999 999
Q ss_pred cccccccccCCChhhhhcCCCceEEEccCCcccccCCCC---ccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecc
Q 003301 76 DFSNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNN---IWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGF 152 (832)
Q Consensus 76 ~ls~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~---l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~ 152 (832)
|+++|.+.+.+|..++.++++|++|++++|++++..|.. +.++++|++|++++|++++..| +..+++|++|+|++
T Consensus 132 ~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 209 (768)
T 3rgz_A 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS 209 (768)
T ss_dssp ECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCS
T ss_pred ECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcC
Confidence 999999999999887669999999999999999888877 8899999999999999997655 48899999999999
Q ss_pred cccccccCccccCccccceecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccc
Q 003301 153 NNLTGEIPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGI 232 (832)
Q Consensus 153 N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~ 232 (832)
|++++.+|. ++++++|++|++++|++++.+|.++.++++|++|++++|.+.+.+|.. .+++|++|+|++|++++.
T Consensus 210 n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ 284 (768)
T 3rgz_A 210 NNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGE 284 (768)
T ss_dssp SCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEES
T ss_pred CcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCc
Confidence 999987777 999999999999999999999999999999999999999999877753 789999999999999988
Q ss_pred cCCcccCC-CCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccc-cccCCCCcEEeccCCCCCCCC
Q 003301 233 IPSFIFNA-SKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSS-WANCKNLKLLDLSNNPINGVL 310 (832)
Q Consensus 233 ~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~ 310 (832)
+|..+... ++|++|+|++|.+++..|..|.++++|++|++++|.+++ .++.. +..+++|++|++++|++.+.+
T Consensus 285 ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-----~ip~~~l~~l~~L~~L~Ls~n~l~~~~ 359 (768)
T 3rgz_A 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-----ELPMDTLLKMRGLKVLDLSFNEFSGEL 359 (768)
T ss_dssp CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE-----ECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC-----cCCHHHHhcCCCCCEEeCcCCccCccc
Confidence 88888775 999999999999999999999999999999999999973 22322 677788888888888877777
Q ss_pred CCccccccc--------------------------ccceEEeecCcccccccccccCcCcccEEEeecCccccccccccc
Q 003301 311 PSSIGNLSL--------------------------SLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFG 364 (832)
Q Consensus 311 ~~~~~~~~~--------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 364 (832)
|..+..+.. +|++|++++|++++.+|..+.++++|++|++++|++++..|..|.
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 766654432 466666666777777777888888888888888888888888888
Q ss_pred CCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCccccee
Q 003301 365 KLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSL 444 (832)
Q Consensus 365 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 444 (832)
.+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.+|..+++|++|
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred eecCCcccCCCccccccccccceecccCcccCCccCCcc-----------------------------------------
Q 003301 445 NFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAI----------------------------------------- 483 (832)
Q Consensus 445 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------------------------- 483 (832)
++++|++++.+|..++.+++|+.|||++|+++|.+|..+
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 888888888888888888888888888888887666543
Q ss_pred -----------------------------ccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhh
Q 003301 484 -----------------------------GGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKL 534 (832)
Q Consensus 484 -----------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 534 (832)
+++++|+.|+|++|+++|.+|..|+.+++|+.|||++|+++|.+|..++.+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 335678889999999999999999999999999999999999999999999
Q ss_pred ccCCeeeCCCCcccccCCCC-CCCCCcCCCcccCCC
Q 003301 535 LYLKDLNLSFNKLEGEIPRG-GPFANFSNRSFMGND 569 (832)
Q Consensus 535 ~~L~~l~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~ 569 (832)
++|++|||++|+++|.+|.. ..+..+......+|.
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 99999999999999999873 344444444555554
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-64 Score=602.15 Aligned_cols=568 Identities=23% Similarity=0.257 Sum_probs=379.7
Q ss_pred ccCCCCcceeccCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccc
Q 003301 2 LSLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNS 81 (832)
Q Consensus 2 ldl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~ 81 (832)
+|.+++.++ .+|..+. +.+++|+|++|++++..|..|.++++|++|+|++|.+++..|..++.+++| ++|++++|.
T Consensus 9 ~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML-KVLNLQHNE 84 (680)
T ss_dssp EECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTC-CEEECCSSC
T ss_pred eECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCc-CEEECCCCc
Confidence 466777777 6676654 677777777777775555567777777777777777776666667777777 777777777
Q ss_pred cccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCc
Q 003301 82 LTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPY 161 (832)
Q Consensus 82 l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~ 161 (832)
++ .+|...+.++++|++|++++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|++++|++++..+.
T Consensus 85 l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 LS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred cC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 77 66666555777777777777777765566777777777777777777776677777777777777777777755555
Q ss_pred ccc--CccccceecccccccccccCcccccC---------------------------CcccEEEecCCCCCCCCCcccc
Q 003301 162 EMG--NLRNLEILGLQLNKLVGFVPTSIFNL---------------------------SAMKTLALPSNALSGSLPSSID 212 (832)
Q Consensus 162 ~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~p~~~~ 212 (832)
.+. .+++|++|++++|++++..|..|..+ ++|++|++++|.+.+..|..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 443 44677777777777777666655544 4566667777777666565542
Q ss_pred ccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccc----c
Q 003301 213 LVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFL----S 288 (832)
Q Consensus 213 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----~ 288 (832)
-...++|++|+|++|+++++.+..|..+++|++|++++|.+++..|..|.++++|++|++++|..........++ .
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 112234888888888887777777777888888888888887777777777777777777766543210000111 1
Q ss_pred ccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccc--cccccccCc--CcccEEEeecCccccccccccc
Q 003301 289 SWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRG--TIPKEIGNL--INLRELGLWGNELIGSIPITFG 364 (832)
Q Consensus 289 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~ 364 (832)
.|..+++|++|++++|.+.+..+..+..+. +|++|++++|.++. ..+..|..+ ++|+.|++++|++++..|.+|.
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 466777778888887777776666666665 77777777766432 222233332 4677777777777766666777
Q ss_pred CCCCCceEEccCCccCCCCc-hhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCC--CCCCcccccCccc
Q 003301 365 KLQNLQGLDLVNNKLEGPIP-NGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELN--SVIPSTFWNLKDI 441 (832)
Q Consensus 365 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L 441 (832)
.+++|++|+|++|++++.+| ..+..+++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..|.++++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 77777777777777765444 56666777777777777776666666777777777777777665 4456667777777
Q ss_pred ceeeecCCcccCCCccccccccccceecccCcccCCccC--------CccccccccceeecccccccccCCccccCCCCC
Q 003301 442 LSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIP--------TAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSL 513 (832)
Q Consensus 442 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 513 (832)
+.|++++|++++..+..|..+++|++|+|++|++++..+ ..|.++++|+.|+|++|+++...+..|+++++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 777777777776666666777777777777777664321 235666777777777777764444456777777
Q ss_pred CeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCCC-C-CCCCcCCCcccCCCCCCCCc
Q 003301 514 ESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPRG-G-PFANFSNRSFMGNDLLCGLA 575 (832)
Q Consensus 514 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~-~~~~~~~~~~~~n~~~c~~~ 575 (832)
+.|||++|++++..+..|..+++|+.|+|++|++++..|.. . .+.++....+.|||+.|.++
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 77777777777665556666777777777777776655431 1 23444455566777777654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.1e-64 Score=597.37 Aligned_cols=543 Identities=21% Similarity=0.222 Sum_probs=483.0
Q ss_pred CccCCCCcceeccCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCC-cccCcccccccccccc
Q 003301 1 MLSLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPS-TIFNLSSLSTGMDFSN 79 (832)
Q Consensus 1 ~ldl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~l~~~L~ls~ 79 (832)
.|||++|.+++..+..|+++++|++|+|++|++++..|+.|+++++|++|+|++|.++ .+|+ .++.+++| ++|++++
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L-~~L~L~~ 106 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNL-TELHLMS 106 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTC-SEEECCS
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCC-CEEECCC
Confidence 3799999999877778999999999999999999888999999999999999999999 5665 69999999 9999999
Q ss_pred cccccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCc--CCCcCceEEeccccccc
Q 003301 80 NSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLG--NLTSLKTLYLGFNNLTG 157 (832)
Q Consensus 80 n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~--~l~~L~~L~Ls~N~i~~ 157 (832)
|+++ .+|...+.++++|++|++++|++++..|..+..+++|++|++++|++++..+..+. .+++|++|++++|++++
T Consensus 107 n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 107 NSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp SCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 9998 67765556999999999999999988899999999999999999999977666554 56899999999999998
Q ss_pred ccCccccCc---------------------------cccceecccccccccccCcccccCCc--ccEEEecCCCCCCCCC
Q 003301 158 EIPYEMGNL---------------------------RNLEILGLQLNKLVGFVPTSIFNLSA--MKTLALPSNALSGSLP 208 (832)
Q Consensus 158 ~~p~~~~~l---------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~p 208 (832)
..|..|..+ ++|+.|++++|++.+..|.+|.+++. |++|++++|.+.+..|
T Consensus 186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc
Confidence 888777654 45778888899999888999998865 9999999999997766
Q ss_pred ccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcc---------cCCccccCccccceeecccccCCC
Q 003301 209 SSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSG---------FIPNTLGNLRKLEWLRLSYNFLTS 279 (832)
Q Consensus 209 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~---------~~~~~~~~l~~L~~L~L~~N~l~~ 279 (832)
..+ ..+++|++|++++|++++..|..|.++++|++|++++|...+ +....|..+++|++|++++|.++.
T Consensus 266 ~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 266 DSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTT--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred ccc--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 654 789999999999999999999999999999999999886543 222378899999999999999998
Q ss_pred CCCccccccccccCCCCcEEeccCCCCCCC--CCCcccccc-cccceEEeecCcccccccccccCcCcccEEEeecCccc
Q 003301 280 STSELSFLSSWANCKNLKLLDLSNNPINGV--LPSSIGNLS-LSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELI 356 (832)
Q Consensus 280 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 356 (832)
++. ..|..+++|++|++++|.+... .+..+..+. .+|+.|++++|++++..|..|..+++|++|++++|.+.
T Consensus 344 ~~~-----~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 344 IKS-----NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCT-----TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CCh-----hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 544 3588999999999999986432 222333322 37999999999999999999999999999999999998
Q ss_pred cccc-ccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCC--CCCcccCCCCCCCCeEeCCCCcCCCCCCc
Q 003301 357 GSIP-ITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLS--GPIPPCIGDLTSLRLLSLASNELNSVIPS 433 (832)
Q Consensus 357 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 433 (832)
+.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.+. +..|..|..+++|+.|++++|+++++.+.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 7665 78999999999999999999888999999999999999999997 57899999999999999999999999999
Q ss_pred ccccCcccceeeecCCcccCCCc--------cccccccccceecccCcccCCccCCccccccccceeecccccccccCCc
Q 003301 434 TFWNLKDILSLNFSSNFLNGSLP--------EDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPK 505 (832)
Q Consensus 434 ~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 505 (832)
.|.++++|++|++++|++++..+ ..|..+++|+.|+|++|+++...+..|.++++|+.|+|++|++++..+.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence 99999999999999999986422 2478999999999999999966666899999999999999999987778
Q ss_pred cccCCCCCCeeccCCCcccccCchhhh-hhccCCeeeCCCCcccccCCC
Q 003301 506 SIGGLVSLESLDLSNNSLSGNIPTSME-KLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 506 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~l~~N~l~~~~p~ 553 (832)
.|..+++|+.|+|++|++++..|..+. .+++|+.+++++|+|.|.|+.
T Consensus 579 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 899999999999999999999888888 899999999999999999985
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.6e-62 Score=570.06 Aligned_cols=533 Identities=21% Similarity=0.198 Sum_probs=443.9
Q ss_pred ccCCCCcceeccCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccc
Q 003301 2 LSLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNS 81 (832)
Q Consensus 2 ldl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~ 81 (832)
+|.++..++ .+|..+.. .+++|+|++|++++..|..|.++++|++|+|++|.+.+..|..++.+++| ++|++++|.
T Consensus 17 ~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~Ls~n~ 92 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL-DTLVLTANP 92 (606)
T ss_dssp EECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTC-CEEECTTCC
T ss_pred EECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCcccc-CeeeCCCCc
Confidence 456677777 77777754 67888888888887777788888888888888888887777788888888 888888888
Q ss_pred cccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCc
Q 003301 82 LTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPY 161 (832)
Q Consensus 82 l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~ 161 (832)
+++..|..+ ..+++|++|++++|++++..|..++.+++|++|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus 93 l~~~~~~~~-~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETAL-SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTTT-SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ccccChhhh-cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 885445544 4788888888888888866677788888888888888888865444455588888888888888877777
Q ss_pred cccCccccc--eecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCc-----cccccC
Q 003301 162 EMGNLRNLE--ILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNN-----FSGIIP 234 (832)
Q Consensus 162 ~~~~l~~L~--~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~-----i~~~~~ 234 (832)
.|+.+++|+ .|++++|++.+..|..|. ..+|++|++++|.. ++..+ ..+.++....+..+. ...+.+
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~~~--~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LLVIF--KGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HHHHH--HHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---HHHHh--hhccccchhheechhhccccccccCh
Confidence 788888888 788888888876666554 46788888888762 22211 223333322222221 122333
Q ss_pred CcccCCC--CccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCC
Q 003301 235 SFIFNAS--KLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPS 312 (832)
Q Consensus 235 ~~~~~l~--~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 312 (832)
..|.++. +|++|++++|.++++.+..|..+++|++|++++|.++.++ ..+..+++|++|++++|++.+..|.
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp------~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP------SGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC------SSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC------hhhcccccCCEEECccCCcCcCchh
Confidence 4444443 7999999999999998888999999999999999998754 3468899999999999999988888
Q ss_pred cccccccccceEEeecCcccccccc-cccCcCcccEEEeecCcccccc--cccccCCCCCceEEccCCccCCCCchhhcC
Q 003301 313 SIGNLSLSLSRIFISNCSIRGTIPK-EIGNLINLRELGLWGNELIGSI--PITFGKLQNLQGLDLVNNKLEGPIPNGLCQ 389 (832)
Q Consensus 313 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 389 (832)
.+..+. +|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|++++..|..+..
T Consensus 320 ~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 320 SASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp CGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 888887 999999999999866654 5999999999999999999876 788999999999999999999888999999
Q ss_pred CCCCcEEEecCCcCCCCCccc-CCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCC---Ccccccccccc
Q 003301 390 LARLSVLYMDGNKLSGPIPPC-IGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGS---LPEDIGNLKVV 465 (832)
Q Consensus 390 l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L 465 (832)
+++|++|++++|++++..|.. |..+++|+.|++++|.+++..|..|..+++|++|++++|++++. .+..+..+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 999999999999999876654 89999999999999999999999999999999999999999863 33678999999
Q ss_pred ceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCC
Q 003301 466 VIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFN 545 (832)
Q Consensus 466 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N 545 (832)
+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++| .|+|++|++++.+|..+..+++|+.|++++|
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cccccCCC
Q 003301 546 KLEGEIPR 553 (832)
Q Consensus 546 ~l~~~~p~ 553 (832)
+++|.|+.
T Consensus 558 ~~~c~c~~ 565 (606)
T 3t6q_A 558 PLDCTCSN 565 (606)
T ss_dssp CEECSGGG
T ss_pred CccccCCc
Confidence 99998875
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-60 Score=575.00 Aligned_cols=526 Identities=21% Similarity=0.228 Sum_probs=456.5
Q ss_pred ccCCCCcceeccCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCC-CCcccCccccccccccccc
Q 003301 2 LSLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTI-PSTIFNLSSLSTGMDFSNN 80 (832)
Q Consensus 2 ldl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~l~~~L~ls~n 80 (832)
.|.++++++ .+|. -.+++++|||++|++++..|..|..+++|++|+|++|...+.+ |..+.++++| ++|+|++|
T Consensus 9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L-~~L~Ls~N 83 (844)
T 3j0a_A 9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL-RILDLGSS 83 (844)
T ss_dssp EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTC-CEEECTTC
T ss_pred EEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCC-CEEECCCC
Confidence 467889999 7787 5689999999999999888999999999999999999777677 6789999999 99999999
Q ss_pred ccccCCChhhhhcCCCceEEEccCCcccccCCCC--ccCCCCccEEECcCCcccccCC-CCCcCCCcCceEEeccccccc
Q 003301 81 SLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNN--IWQCKELIVISLAYNQFTERIP-RGLGNLTSLKTLYLGFNNLTG 157 (832)
Q Consensus 81 ~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~--l~~l~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~Ls~N~i~~ 157 (832)
.+++..|..+. .+++|++|+|++|++++.+|.. +..+++|++|+|++|++++..+ ..|+++++|++|+|++|.+++
T Consensus 84 ~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99955566554 9999999999999999866665 8999999999999999987655 579999999999999999998
Q ss_pred ccCccccCc--cccceecccccccccccCcccccCCc------ccEEEecCCCCCCCCCcccc-ccCCCCccEEEcc---
Q 003301 158 EIPYEMGNL--RNLEILGLQLNKLVGFVPTSIFNLSA------MKTLALPSNALSGSLPSSID-LVRLPNLEIISLA--- 225 (832)
Q Consensus 158 ~~p~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~------L~~L~L~~n~l~~~~p~~~~-~~~l~~L~~L~Ls--- 225 (832)
..+..+..+ ++|+.|++++|.+.+..|..+..+++ |++|++++|.+.+..|..+. .....+++.|.++
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 889999888 89999999999999888887777665 99999999999887776652 1234678888877
Q ss_pred ------CCccccccCCcccCC--CCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCc
Q 003301 226 ------GNNFSGIIPSFIFNA--SKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLK 297 (832)
Q Consensus 226 ------~n~i~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~ 297 (832)
.+.+....+..|.++ ++|++|++++|.+.+..+..|..+++|++|+|++|.++.++ +..|..+++|+
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~ 317 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-----DEAFYGLDNLQ 317 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-----TTTTTTCSSCC
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-----hHHhcCCCCCC
Confidence 344555556666665 78999999999999999999999999999999999998743 34588999999
Q ss_pred EEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCC
Q 003301 298 LLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNN 377 (832)
Q Consensus 298 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 377 (832)
+|+|++|++.+..|..+..+. +|++|++++|.+++..+..|..+++|++|+|++|.+++. ..+++|+.|++++|
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGN 391 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESC
T ss_pred EEECCCCCCCccCHHHhcCCC-CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCC
Confidence 999999999988888998887 999999999999988888999999999999999999853 33789999999999
Q ss_pred ccCCCCchhhcCCCCCcEEEecCCcCCCCC-cccCCCCCCCCeEeCCCCcCCCCCCc-ccccCcccceeeecCCccc---
Q 003301 378 KLEGPIPNGLCQLARLSVLYMDGNKLSGPI-PPCIGDLTSLRLLSLASNELNSVIPS-TFWNLKDILSLNFSSNFLN--- 452 (832)
Q Consensus 378 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~--- 452 (832)
+++ .+|.. ..+++.|++++|++++.. +..+..+++|+.|+|++|++++..+. .+..+++|+.|++++|.++
T Consensus 392 ~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 467 (844)
T 3j0a_A 392 KLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467 (844)
T ss_dssp CCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSC
T ss_pred Ccc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccc
Confidence 998 45543 467999999999998643 23467899999999999999986554 4677899999999999997
Q ss_pred --CCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchh
Q 003301 453 --GSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTS 530 (832)
Q Consensus 453 --~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 530 (832)
+..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..+. ++|+.|||++|+|++.+|..
T Consensus 468 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred ccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 44556789999999999999999999999999999999999999999987777776 89999999999999999987
Q ss_pred hhhhccCCeeeCCCCcccccCCC
Q 003301 531 MEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 531 ~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
+. +|+.+++++|++.|.|+-
T Consensus 546 ~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 546 FV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp CS---SCCEEEEEEECCCCSSSC
T ss_pred hC---CcCEEEecCCCccccccc
Confidence 64 789999999999999875
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-59 Score=548.84 Aligned_cols=528 Identities=20% Similarity=0.191 Sum_probs=441.8
Q ss_pred ccCCCCcceeccCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccc
Q 003301 2 LSLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNS 81 (832)
Q Consensus 2 ldl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~ 81 (832)
+|.+++.++ .+|..+. +++++|+|++|++++..|..|.++++|++|+|++|.+++..|..++.+++| ++|++++|.
T Consensus 16 ~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L-~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL-SNLILTGNP 91 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC-CEEECTTCC
T ss_pred eEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhc-CEeECCCCc
Confidence 467788888 7777665 788888888888887777788888888888888888886667778888888 888888888
Q ss_pred cccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccc-cCCCCCcCCCcCceEEecccccccccC
Q 003301 82 LTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTE-RIPRGLGNLTSLKTLYLGFNNLTGEIP 160 (832)
Q Consensus 82 l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~Ls~N~i~~~~p 160 (832)
+++..|..+ .++++|++|++++|++++..+..++.+++|++|++++|++++ .+|..|+++++|++|+|++|++++..|
T Consensus 92 l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSF-SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCTTSS-TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred ccccChhhc-CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 884445544 488888888888888886666778888888888888888875 468888888888888888888887777
Q ss_pred ccccCccccc----eecccccccccccCcccccCCcccEEEecCCCCCC-CCCccccccCCCCccEEEccCCcccc----
Q 003301 161 YEMGNLRNLE----ILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSG-SLPSSIDLVRLPNLEIISLAGNNFSG---- 231 (832)
Q Consensus 161 ~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~~~l~~L~~L~Ls~n~i~~---- 231 (832)
..|+.+++|+ +|++++|+++++.+..+... +|++|++++|.+.+ ..|.. +..+++|+.+++..+.+..
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTC--LQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHH--HHTTTTCEEEEEEEECCTTSCCC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHH--hccccccccccccccccccCCcc
Confidence 7788777765 68888888887666655544 88888888888763 33333 4677888888776554432
Q ss_pred --ccCCcccCCC--CccEEEc-CCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCC
Q 003301 232 --IIPSFIFNAS--KLSVLEL-GENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPI 306 (832)
Q Consensus 232 --~~~~~~~~l~--~L~~L~L-~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 306 (832)
..+..+.++. .++.+++ ..|.+.+..|. +..+++|+.|++++|.+..++ .+..+++|++|++++|.+
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-------~l~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-------DVPKHFKWQSLSIIRCQL 319 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-------CCCTTCCCSEEEEESCCC
T ss_pred cccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-------hccccccCCEEEcccccC
Confidence 2222222222 4667777 78888888887 999999999999999998754 468899999999999999
Q ss_pred CCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccc--cccccCCCCCceEEccCCccCCCCc
Q 003301 307 NGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSI--PITFGKLQNLQGLDLVNNKLEGPIP 384 (832)
Q Consensus 307 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~ 384 (832)
+.+|. + .+. +|++|++++|...+.. .+..+++|++|++++|++++.. +..+..+++|++|++++|.+++ +|
T Consensus 320 -~~lp~-~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~ 392 (606)
T 3vq2_A 320 -KQFPT-L-DLP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392 (606)
T ss_dssp -SSCCC-C-CCS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC
T ss_pred -ccccc-C-CCC-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch
Confidence 57774 4 555 9999999999665443 6789999999999999998763 7889999999999999999984 67
Q ss_pred hhhcCCCCCcEEEecCCcCCCCCc-ccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccC-CCccccccc
Q 003301 385 NGLCQLARLSVLYMDGNKLSGPIP-PCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNG-SLPEDIGNL 462 (832)
Q Consensus 385 ~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l 462 (832)
..+..+++|++|++++|++.+..| ..|..+++|+.|++++|.+++..|..|.++++|++|++++|++++ .+|..++.+
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 889999999999999999998877 689999999999999999999999999999999999999999997 478899999
Q ss_pred cccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhc-cCCeee
Q 003301 463 KVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLL-YLKDLN 541 (832)
Q Consensus 463 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~l~ 541 (832)
++|+.|+|++|++++..|..|.++++|+.|+|++|++++.+|..|+.+++|+.|||++|+++ .+|..+..++ +|+.|+
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEE
Confidence 99999999999999999999999999999999999999989999999999999999999999 5777799887 599999
Q ss_pred CCCCcccccCCC
Q 003301 542 LSFNKLEGEIPR 553 (832)
Q Consensus 542 l~~N~l~~~~p~ 553 (832)
+++|++.|.++.
T Consensus 552 l~~N~~~c~c~~ 563 (606)
T 3vq2_A 552 LTNNSVACICEH 563 (606)
T ss_dssp CCSCCCCCSSTT
T ss_pred ccCCCcccCCcc
Confidence 999999999886
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.8e-59 Score=547.18 Aligned_cols=514 Identities=21% Similarity=0.189 Sum_probs=452.4
Q ss_pred CccCCCCcceeccCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCccccccccccccc
Q 003301 1 MLSLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNN 80 (832)
Q Consensus 1 ~ldl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n 80 (832)
+|||++|.|++..|..|+++++|++|+|++|++++..|+.|..+++|++|+|++|.+++..|..++.+++| ++|++++|
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n 115 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL-KHLFFIQT 115 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC-CEEECTTS
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccc-cEeecccc
Confidence 48999999998889999999999999999999998889999999999999999999998889999999999 99999999
Q ss_pred ccccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCc--eEEecccccccc
Q 003301 81 SLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLK--TLYLGFNNLTGE 158 (832)
Q Consensus 81 ~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~--~L~Ls~N~i~~~ 158 (832)
.++ .++...+.++++|++|++++|++++..+..+..+++|++|++++|++++..|..|+.+++|+ .|++++|++++.
T Consensus 116 ~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 116 GIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp CCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred Ccc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 999 55444456999999999999999975545566699999999999999988888899999999 899999999977
Q ss_pred cCccccCccccceecccccccccccCcccccCCcccEEEecCCCCCCC----CCccccccCCC--CccEEEccCCccccc
Q 003301 159 IPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGS----LPSSIDLVRLP--NLEIISLAGNNFSGI 232 (832)
Q Consensus 159 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~~~l~--~L~~L~Ls~n~i~~~ 232 (832)
.|..|.. .+|+.|++++|.. .+..+.++.+++...+.-+.+.+. ++.. .+..+. +|++|++++|.++++
T Consensus 195 ~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~-~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 195 EPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA-VFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG-GGGGGGGSEEEEEECTTCCCSSC
T ss_pred ChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChh-HhchhhcCceeEEEeecCccCcc
Confidence 7766654 6899999999972 445566666665555544433211 1111 122222 799999999999999
Q ss_pred cCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCC
Q 003301 233 IPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPS 312 (832)
Q Consensus 233 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 312 (832)
.+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.++.++ +..+..+++|++|++++|.+.+.+|.
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC-----QISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG-----GGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc-----hhhhhccCcCCEEECCCCCcccccch
Confidence 9999999999999999999999 56778999999999999999998743 34688999999999999999877665
Q ss_pred c-ccccccccceEEeecCcccccc--cccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCch-hhc
Q 003301 313 S-IGNLSLSLSRIFISNCSIRGTI--PKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPN-GLC 388 (832)
Q Consensus 313 ~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~ 388 (832)
. +..+. +|++|++++|.+++.. +..+..+++|++|++++|++.+..|..|..+++|++|++++|++++..|. .+.
T Consensus 344 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 344 GCLENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp STTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 4 66665 9999999999999776 78899999999999999999999999999999999999999999977665 489
Q ss_pred CCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCC---CCcccccCcccceeeecCCcccCCCcccccccccc
Q 003301 389 QLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSV---IPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVV 465 (832)
Q Consensus 389 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 465 (832)
.+++|++|++++|.+++..|..|..+++|+.|++++|++++. .+..|..+++|++|++++|++++..|..|+.+++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 999999999999999999999999999999999999999873 34679999999999999999999889999999999
Q ss_pred ceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCch
Q 003301 466 VIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPT 529 (832)
Q Consensus 466 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 529 (832)
+.|+|++|++++..|..|.+++.| .|+|++|++++.+|..++.+++|+.|++++|++++..+.
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999999 999999999999999999999999999999999987663
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-57 Score=547.64 Aligned_cols=527 Identities=22% Similarity=0.251 Sum_probs=460.5
Q ss_pred CeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEEEcc
Q 003301 24 KKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMS 103 (832)
Q Consensus 24 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~ 103 (832)
+..|.++++++ .+|. -.++|++|+|++|.+++..|..+..+++| ++|||++|...+.++...+.++++|++|+|+
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L-~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQL-QLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSC-SEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccC-eEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 46788999998 7887 55799999999999998888999999999 9999999977778877767799999999999
Q ss_pred CCcccccCCCCccCCCCccEEECcCCcccccCCCC--CcCCCcCceEEecccccccccC-ccccCccccceecccccccc
Q 003301 104 NNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRG--LGNLTSLKTLYLGFNNLTGEIP-YEMGNLRNLEILGLQLNKLV 180 (832)
Q Consensus 104 ~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~--~~~l~~L~~L~Ls~N~i~~~~p-~~~~~l~~L~~L~L~~N~l~ 180 (832)
+|++++..|+.|.++++|++|+|++|.+++.+|.. |+++++|++|+|++|.+++..+ ..|+++++|++|+|++|.++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 99999888999999999999999999999866665 9999999999999999987655 57999999999999999999
Q ss_pred cccCcccccC--CcccEEEecCCCCCCCCCccccccCCC------CccEEEccCCccccccCCcccCC---CCccEEEcC
Q 003301 181 GFVPTSIFNL--SAMKTLALPSNALSGSLPSSIDLVRLP------NLEIISLAGNNFSGIIPSFIFNA---SKLSVLELG 249 (832)
Q Consensus 181 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~~~l~------~L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~ 249 (832)
+..+..+..+ ++|+.|++++|.+.+..|..+ ..++ .|++|++++|.+++..+..+... ++++.|.++
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW--GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC--CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred eeCHHHcccccCCccceEECCCCccccccccch--hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 9999999888 899999999999998777654 3444 49999999999998888777643 678889887
Q ss_pred C---------CcCcccCCccccCc--cccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccc
Q 003301 250 E---------NSFSGFIPNTLGNL--RKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLS 318 (832)
Q Consensus 250 ~---------N~i~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 318 (832)
. +.+.+..+..|.++ ++|+.|++++|.+..+. +..|..+++|+.|+|++|++.+..|..+..+.
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 314 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-----SRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC-----SCCSSSCCCCCEEEEESCCCCEECTTTTTTCS
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccC-----hhhhhcCCCCCEEECCCCcCCCCChHHhcCCC
Confidence 3 44454555666665 78999999999998743 34588999999999999999988888898887
Q ss_pred cccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEe
Q 003301 319 LSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYM 398 (832)
Q Consensus 319 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 398 (832)
+|++|++++|.+++..|..|..+++|+.|++++|++.+..+..|..+++|++|+|++|.+++. + .+++|+.|++
T Consensus 315 -~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l 388 (844)
T 3j0a_A 315 -NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFL 388 (844)
T ss_dssp -SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEE
T ss_pred -CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhcc
Confidence 999999999999999999999999999999999999988888999999999999999999843 3 3789999999
Q ss_pred cCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCc-ccccCcccceeeecCCcccCCCcc-ccccccccceecccCcccC
Q 003301 399 DGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPS-TFWNLKDILSLNFSSNFLNGSLPE-DIGNLKVVVIIDLSRNNLS 476 (832)
Q Consensus 399 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~ 476 (832)
++|+++ .+|.. ..+++.|++++|++++.... .+.++++|++|+|++|++++..+. .+..+++|+.|+|++|.++
T Consensus 389 ~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 389 SGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp ESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred CCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence 999998 55544 46799999999999886433 356899999999999999975544 4667899999999999997
Q ss_pred -----CccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccC
Q 003301 477 -----GDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEI 551 (832)
Q Consensus 477 -----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 551 (832)
+..+..|.++++|+.|+|++|++++.+|..|..+++|+.|+|++|+|++..|..+. ++|+.|+|++|++++.+
T Consensus 465 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN 542 (844)
T ss_dssp SSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred cccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC
Confidence 45567899999999999999999999999999999999999999999988887776 89999999999999998
Q ss_pred CCCCCCCCcCCCcccCCCCCCCCcc
Q 003301 552 PRGGPFANFSNRSFMGNDLLCGLAQ 576 (832)
Q Consensus 552 p~~~~~~~~~~~~~~~n~~~c~~~~ 576 (832)
|.. +..+....+.||++.|.++.
T Consensus 543 ~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 543 PDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp SCC--CSSCCEEEEEEECCCCSSSC
T ss_pred hhH--hCCcCEEEecCCCccccccc
Confidence 863 55666677899999998764
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.9e-58 Score=535.13 Aligned_cols=509 Identities=21% Similarity=0.184 Sum_probs=448.3
Q ss_pred CccCCCCcceeccCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCccccccccccccc
Q 003301 1 MLSLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNN 80 (832)
Q Consensus 1 ~ldl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n 80 (832)
.|||++|.+++..+..|+++++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..++.+++| ++|++++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-~~L~L~~n 114 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL-ENLVAVET 114 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC-CEEECTTS
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC-CEEEccCC
Confidence 37999999998888899999999999999999998888899999999999999999997779999999999 99999999
Q ss_pred ccccCCChhhhhcCCCceEEEccCCcccc-cCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCc----eEEeccccc
Q 003301 81 SLTGSLPDDMCRRLPLIKGLYMSNNKLTG-PIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLK----TLYLGFNNL 155 (832)
Q Consensus 81 ~l~~~lp~~~~~~l~~L~~L~l~~N~l~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~----~L~Ls~N~i 155 (832)
.++ .+|...+.++++|++|++++|++++ .+|..++++++|++|++++|++++..|..|+.+++|+ +|++++|.+
T Consensus 115 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 115 KLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp CCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC
T ss_pred ccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc
Confidence 999 5664445699999999999999986 5799999999999999999999998899999888776 899999999
Q ss_pred ccccCccccCccccceecccccccc-cccCcccccCCcccEEEecCCCCCCC-----CCccccccCC--CCccEEEc-cC
Q 003301 156 TGEIPYEMGNLRNLEILGLQLNKLV-GFVPTSIFNLSAMKTLALPSNALSGS-----LPSSIDLVRL--PNLEIISL-AG 226 (832)
Q Consensus 156 ~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~-----~p~~~~~~~l--~~L~~L~L-s~ 226 (832)
++..+..+... +|+.|++++|.+. +..|..+.++++|+.+++..+.+.+. ++... +..+ -.++.+++ ..
T Consensus 194 ~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~-~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 194 DFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI-MEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG-GTTGGGSEEEEEEECCC
T ss_pred ceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHH-hhhhhhccHhheecccc
Confidence 96666556554 8999999999987 46778899999999999876655421 11100 1111 25677777 78
Q ss_pred CccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCC
Q 003301 227 NNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPI 306 (832)
Q Consensus 227 n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 306 (832)
|.+.+..|. +..+++|++|++++|.+... | .+..+++|++|++++|.+..++ .+ .+++|++|++++|+.
T Consensus 272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l~~lp-------~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 272 NDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQLKQFP-------TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp TTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCCSSCC-------CC-CCSSCCEEEEESCSS
T ss_pred ccccccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccCcccc-------cC-CCCccceeeccCCcC
Confidence 888888887 89999999999999999854 4 8899999999999999996543 35 889999999999976
Q ss_pred CCCCCCcccccccccceEEeecCccccc--ccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCc
Q 003301 307 NGVLPSSIGNLSLSLSRIFISNCSIRGT--IPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIP 384 (832)
Q Consensus 307 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 384 (832)
.+.. .+..+. +|++|++++|.+++. .|..+..+++|++|++++|.+.+ .|..|..+++|++|++++|++++..|
T Consensus 341 ~~~~--~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 341 SISF--KKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp CEEC--CCCCCT-TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred ccch--hhccCC-CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC
Confidence 5443 455555 999999999999976 48889999999999999999986 56889999999999999999998877
Q ss_pred -hhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCC-CCCcccccCcccceeeecCCcccCCCccccccc
Q 003301 385 -NGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNS-VIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNL 462 (832)
Q Consensus 385 -~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 462 (832)
..+..+++|++|++++|++++..|..|.++++|+.|++++|.+++ ..|..|..+++|++|++++|++++..|..|+.+
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 689999999999999999999999999999999999999999998 589999999999999999999999999999999
Q ss_pred cccceecccCcccCCccCCccccccccceeecccccccccCCccccCCC-CCCeeccCCCcccccCch
Q 003301 463 KVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLV-SLESLDLSNNSLSGNIPT 529 (832)
Q Consensus 463 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~ 529 (832)
++|+.|+|++|++++..|..|.++++|+.|+|++|+++ .+|..+..++ +|+.|++++|++.+..+.
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999999999999999999999999999999999 6777799997 699999999999976654
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-54 Score=500.80 Aligned_cols=508 Identities=21% Similarity=0.237 Sum_probs=336.1
Q ss_pred eEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEEEccC
Q 003301 25 KLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMSN 104 (832)
Q Consensus 25 ~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~ 104 (832)
..+.++.+++ .+|..+. +++++|+|++|.+++..+..+..+++| ++||+++|+++ .++...+.++++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPEL-QVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSC-CEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCc-eEEECCCCcCC-ccCcccccCchhCCEEeCcC
Confidence 3444444444 4444332 245555555555543333444445554 55555555554 33333333455555555555
Q ss_pred CcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEeccccccc-ccCccccCccccceeccccccccccc
Q 003301 105 NKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTG-EIPYEMGNLRNLEILGLQLNKLVGFV 183 (832)
Q Consensus 105 N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~~L~~L~L~~N~l~~~~ 183 (832)
|++++..|..|..+++|++|++++|++++..+..|+++++|++|++++|.+++ .+|..|+++++|++|++++|++++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 55554444455555555555555555554333345555555555555555543 23555555555555555555555544
Q ss_pred CcccccCCcc----cEEEecCCCCCCCCCccccccCCCCccEEEccCCccc-cccCCcccCCCCccEEEcCCC------c
Q 003301 184 PTSIFNLSAM----KTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFS-GIIPSFIFNASKLSVLELGEN------S 252 (832)
Q Consensus 184 ~~~~~~l~~L----~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N------~ 252 (832)
+..+..+++| ++|++++|.+.+..|..+ . ..+|++|++++|... ...+..+..+++++.+.+..+ .
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~--~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--K-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTT--T-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHh--c-cCcceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 4445555444 455555555554333332 1 124555555554322 122333344444444433321 1
Q ss_pred CcccCCccccCccc--cceeecccc-cCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecC
Q 003301 253 FSGFIPNTLGNLRK--LEWLRLSYN-FLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNC 329 (832)
Q Consensus 253 i~~~~~~~~~~l~~--L~~L~L~~N-~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n 329 (832)
+.......+..+++ ++.+++++| .+.. ..+..+..+++|+.|++++|.+. .+|..+... +|++|++++|
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n 314 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLD-----DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNC 314 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEES-----CSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESC
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhh-----hchhhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccC
Confidence 22222333333333 455556555 4433 23345677778888888888776 466666555 7888888888
Q ss_pred cccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCC--chhhcCCCCCcEEEecCCcCCCCC
Q 003301 330 SIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPI--PNGLCQLARLSVLYMDGNKLSGPI 407 (832)
Q Consensus 330 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~ 407 (832)
.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|.+.+..
T Consensus 315 ~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 315 KFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp BCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred ccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence 877 4444 4678889999999988765554 67888999999999988554 678888999999999999988554
Q ss_pred cccCCCCCCCCeEeCCCCcCCCCCC-cccccCcccceeeecCCcccCCCccccccccccceecccCcccC-CccCCcccc
Q 003301 408 PPCIGDLTSLRLLSLASNELNSVIP-STFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLS-GDIPTAIGG 485 (832)
Q Consensus 408 p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~ 485 (832)
+ .+..+++|+.|++++|.+.+..+ ..|..+++|++|++++|++.+..|..+..+++|+.|+|++|+++ +.+|..|.+
T Consensus 390 ~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 390 S-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp E-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred c-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 4 48899999999999999988766 57889999999999999999888999999999999999999997 578999999
Q ss_pred ccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCCC
Q 003301 486 LMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPRG 554 (832)
Q Consensus 486 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 554 (832)
+++|++|+|++|++++..|..|+.+++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.||..
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999999988999999999999999999999998888999999999999999999999974
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-53 Score=493.79 Aligned_cols=506 Identities=21% Similarity=0.199 Sum_probs=434.4
Q ss_pred cCCCCcceeccCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCccccccccccccccc
Q 003301 3 SLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSL 82 (832)
Q Consensus 3 dl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l 82 (832)
|-++.+++ .+|..+. +.+++|+|++|++++..|..|..+++|++|+|++|++++..|..++.+++| ++|++++|.+
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L-~~L~L~~n~l 88 (570)
T 2z63_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL-STLILTGNPI 88 (570)
T ss_dssp ECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTC-CEEECTTCCC
T ss_pred EeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhC-CEEeCcCCcC
Confidence 55677777 7887664 579999999999997778899999999999999999996667788999999 9999999999
Q ss_pred ccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccc-cCCCCCcCCCcCceEEecccccccccCc
Q 003301 83 TGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTE-RIPRGLGNLTSLKTLYLGFNNLTGEIPY 161 (832)
Q Consensus 83 ~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~Ls~N~i~~~~p~ 161 (832)
+ .+|...+.++++|++|++++|++++..+..++.+++|++|++++|.+++ .+|..|+++++|++|++++|++++..|.
T Consensus 89 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 89 Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp C-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred C-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 9 5666556699999999999999996666679999999999999999987 3699999999999999999999988888
Q ss_pred cccCcccc----ceecccccccccccCcccccCCcccEEEecCCCCCC-CCCccccccCCCCccEEEccCCcc------c
Q 003301 162 EMGNLRNL----EILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSG-SLPSSIDLVRLPNLEIISLAGNNF------S 230 (832)
Q Consensus 162 ~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~~~l~~L~~L~Ls~n~i------~ 230 (832)
.++.+++| +.|++++|.+.+..+..|..+ +|+.|++++|.... .+|. .+..+++++.+.+....+ .
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~--~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT--CIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHH--HHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhh--hhcCccccceeeeccccccCchhhh
Confidence 89999999 899999999999888888766 89999999986542 1222 235667777666654322 2
Q ss_pred cccCCcccCCC--CccEEEcCCC-cCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCC
Q 003301 231 GIIPSFIFNAS--KLSVLELGEN-SFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPIN 307 (832)
Q Consensus 231 ~~~~~~~~~l~--~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 307 (832)
.+....+..+. .++.+++++| .+.+..+..+..+++|++|++++|.++.++. .+..+ +|++|++++|.+.
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~------~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD------FSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB------CCSCC-CCSEEEEESCBCS
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh------hhccC-CccEEeeccCccc
Confidence 33334444443 3577888888 7888889999999999999999999987443 45677 9999999999998
Q ss_pred CCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccc--cccccCCCCCceEEccCCccCCCCch
Q 003301 308 GVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSI--PITFGKLQNLQGLDLVNNKLEGPIPN 385 (832)
Q Consensus 308 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~ 385 (832)
.+|.. .+. +|+.|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|++++. +.
T Consensus 318 -~l~~~--~l~-~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~ 390 (570)
T 2z63_A 318 -QFPTL--KLK-SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SS 390 (570)
T ss_dssp -SCCBC--BCS-SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EE
T ss_pred -ccCcc--ccc-ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cc
Confidence 55542 333 899999999999876665 78899999999999998764 77899999999999999999965 44
Q ss_pred hhcCCCCCcEEEecCCcCCCCCc-ccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCccc-CCCcccccccc
Q 003301 386 GLCQLARLSVLYMDGNKLSGPIP-PCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLN-GSLPEDIGNLK 463 (832)
Q Consensus 386 ~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 463 (832)
.+..+++|++|++++|.+.+..| ..|..+++|++|++++|.+.+..|..|.++++|++|++++|+++ +.+|..++.++
T Consensus 391 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 49999999999999999997766 57899999999999999999999999999999999999999998 57899999999
Q ss_pred ccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchh
Q 003301 464 VVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTS 530 (832)
Q Consensus 464 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 530 (832)
+|+.|+|++|++++..|..|.++++|++|+|++|++++.+|..|+.+++|+.|++++|++++..|..
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 9999999999999988999999999999999999999988889999999999999999999988753
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-52 Score=482.13 Aligned_cols=490 Identities=21% Similarity=0.221 Sum_probs=306.0
Q ss_pred cCCCCcceeccCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCccccccccccccccc
Q 003301 3 SLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSL 82 (832)
Q Consensus 3 dl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l 82 (832)
|.++|.++ .+|+.+. +.|++|+|++|++++..|..|..+++|++|++++|++++..|+.++.+++| ++||+++|.+
T Consensus 11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~Ls~n~l 86 (549)
T 2z81_A 11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL-EHLDLSDNHL 86 (549)
T ss_dssp ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECTTSCC
T ss_pred ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccC-CEEECCCCcc
Confidence 66778888 7777665 678888888888887777788888888888888888886666777888887 8888888888
Q ss_pred ccCCChhhhhcCCCceEEEccCCcccc-cCCCCccCCCCccEEECcCCc-ccccCCCCCcCCCcCceEEecccccccccC
Q 003301 83 TGSLPDDMCRRLPLIKGLYMSNNKLTG-PIPNNIWQCKELIVISLAYNQ-FTERIPRGLGNLTSLKTLYLGFNNLTGEIP 160 (832)
Q Consensus 83 ~~~lp~~~~~~l~~L~~L~l~~N~l~~-~~p~~l~~l~~L~~L~Ls~n~-i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p 160 (832)
+ .+|...+..+++|++|++++|++++ ..|..++.+++|++|++++|+ +....+..|.++++|++|++++|++++..|
T Consensus 87 ~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp C-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred C-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 7 5666555578888888888888875 245677778888888888877 443334577778888888888888877777
Q ss_pred ccccCccccceecccccccccccCcccccCCcccEEEecCCCCCCCC--CccccccCCCCccEEEccCCccccccCCccc
Q 003301 161 YEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSL--PSSIDLVRLPNLEIISLAGNNFSGIIPSFIF 238 (832)
Q Consensus 161 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 238 (832)
..++++++|++|+++.|.+....+..+..+++|++|++++|.+.+.. |..+ ...+++|+.|++++|.+++..+..+
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l- 243 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV-DEVSSPMKKLAFRGSVLTDESFNEL- 243 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS-CCCCCCCCEEEEESCEEEHHHHHHH-
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccch-hhhhhcccceeccccccchhHHHHH-
Confidence 77777778888888777776433333345777777777777776431 1111 1234455555555555543322211
Q ss_pred CCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCcc-ccccccccCCCCcEEeccCCCCCCCCC----Cc
Q 003301 239 NASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSEL-SFLSSWANCKNLKLLDLSNNPINGVLP----SS 313 (832)
Q Consensus 239 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~ 313 (832)
+..+..+++|+.|++++|.+.++.... .....+..+++|+.|++.++.+..... ..
T Consensus 244 -------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 244 -------------------LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp -------------------HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred -------------------HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence 112233444555555555444322100 001124556677777777776542110 00
Q ss_pred ccccccccceEEeecCcccccccccc-cCcCcccEEEeecCccccccc---ccccCCCCCceEEccCCccCCCCc--hhh
Q 003301 314 IGNLSLSLSRIFISNCSIRGTIPKEI-GNLINLRELGLWGNELIGSIP---ITFGKLQNLQGLDLVNNKLEGPIP--NGL 387 (832)
Q Consensus 314 ~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~ 387 (832)
+.....+|+.|++++|.++ .+|..+ ..+++|++|++++|++.+..| ..++.+++|++|+|++|++++..+ ..+
T Consensus 305 ~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp HHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred hhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence 0111124555555555554 333333 345566666666666555432 224555556666666665553221 235
Q ss_pred cCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccce
Q 003301 388 CQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVI 467 (832)
Q Consensus 388 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 467 (832)
..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+ .++|++
T Consensus 384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-------------------------l~~~~--~~~L~~ 435 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-------------------------VKTCI--PQTLEV 435 (549)
T ss_dssp GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-------------------------CCTTS--CTTCSE
T ss_pred hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-------------------------ccchh--cCCceE
Confidence 55555555555555555 344455555555555555555443 22222 135667
Q ss_pred ecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcc
Q 003301 468 IDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKL 547 (832)
Q Consensus 468 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l 547 (832)
|+|++|++++.+ .++++|++|+|++|+|+ .+|. .+.+++|++|||++|++++.+|..+..+++|+.|++++|++
T Consensus 436 L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 436 LDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred EECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 777777776532 46777888888888887 5665 46678888888888888888888888888888888888888
Q ss_pred cccCCC
Q 003301 548 EGEIPR 553 (832)
Q Consensus 548 ~~~~p~ 553 (832)
.|.||.
T Consensus 510 ~~~~~~ 515 (549)
T 2z81_A 510 DCSCPR 515 (549)
T ss_dssp CCCHHH
T ss_pred cCCCcc
Confidence 888874
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-52 Score=486.62 Aligned_cols=466 Identities=19% Similarity=0.221 Sum_probs=281.7
Q ss_pred CceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceeccc
Q 003301 96 LIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQ 175 (832)
Q Consensus 96 ~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~ 175 (832)
+|++|++++|++++..|..|..+++|++|+|++|++++..|+.|+++++|++|+|++|++++..|..|+++++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 33444444444443333344444444444444444443333444444444444444444443333334444444444444
Q ss_pred ccccccc-cCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCc
Q 003301 176 LNKLVGF-VPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFS 254 (832)
Q Consensus 176 ~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~ 254 (832)
+|++++. .|..+.++++|++|++++|.+.+.+|.. .+..+++|++|++++|++++..|..+..+++|++|++++|.+.
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 4444331 2233444444444444444422222211 1233444444444444444444444444444444444444443
Q ss_pred ccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcc----cccccccceEEeecCc
Q 003301 255 GFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSI----GNLSLSLSRIFISNCS 330 (832)
Q Consensus 255 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~~~~~L~~L~l~~n~ 330 (832)
...+..+..+++|++|++++|++++.+... ......+++|+.|++++|.+.+..+..+ ..+. +|+.+++++|.
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~-~L~~l~l~~~~ 262 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSP--LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL-ELSEVEFDDCT 262 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCC--CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT-TCCEEEEESCE
T ss_pred ccchhhHhhcccccEEEccCCccccccccc--cchhhhhhcccceeccccccchhHHHHHHHHhhhhc-ccccccccccc
Confidence 222222233444444444444444321100 0011233444444444444433222111 1111 44555555554
Q ss_pred cccc------ccccccCcCcccEEEeecCcccccc-----cccccCCCCCceEEccCCccCCCCchhh-cCCCCCcEEEe
Q 003301 331 IRGT------IPKEIGNLINLRELGLWGNELIGSI-----PITFGKLQNLQGLDLVNNKLEGPIPNGL-CQLARLSVLYM 398 (832)
Q Consensus 331 l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L 398 (832)
+.+. ....+..+++|+.|++.++.+.... +..+...++|+.|++++|+++ .+|..+ ..+++|++|++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEEC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEc
Confidence 4432 1234566778888998888765321 222344578999999999998 677666 57999999999
Q ss_pred cCCcCCCCCc---ccCCCCCCCCeEeCCCCcCCCCCC--cccccCcccceeeecCCcccCCCccccccccccceecccCc
Q 003301 399 DGNKLSGPIP---PCIGDLTSLRLLSLASNELNSVIP--STFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRN 473 (832)
Q Consensus 399 ~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 473 (832)
++|++++.+| ..++.+++|+.|++++|++++..+ ..+..+++|++|++++|+++ .+|..++.+++|++|++++|
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTS
T ss_pred cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCC
Confidence 9999987664 347889999999999999988654 56899999999999999999 57888999999999999999
Q ss_pred ccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCC
Q 003301 474 NLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 474 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
++++ +|..+. ++|+.|+|++|++++.+ ..+++|++|+|++|+|+ .+|. ...+++|++|+|++|++++.+|.
T Consensus 421 ~l~~-l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 421 GIRV-VKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp CCSC-CCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred Cccc-ccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHH
Confidence 9984 444442 58999999999999743 57899999999999999 5676 46799999999999999998876
Q ss_pred -CCCCCCcCCCcccCCCCCCCCcc
Q 003301 554 -GGPFANFSNRSFMGNDLLCGLAQ 576 (832)
Q Consensus 554 -~~~~~~~~~~~~~~n~~~c~~~~ 576 (832)
...+..+....+.+|++.|.++.
T Consensus 492 ~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GGGGCTTCCEEECCSSCBCCCHHH
T ss_pred HHhcCcccCEEEecCCCccCCCcc
Confidence 35566777778899999998873
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-52 Score=491.61 Aligned_cols=461 Identities=21% Similarity=0.259 Sum_probs=253.0
Q ss_pred cccCeEeccCCccccCCCccccccccCcEEEccCCcC------CC------CCCCcccCcccccccccccccccccCCCh
Q 003301 21 TMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFL------SG------TIPSTIFNLSSLSTGMDFSNNSLTGSLPD 88 (832)
Q Consensus 21 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l------~~------~~p~~l~~l~~l~~~L~ls~n~l~~~lp~ 88 (832)
.+++.|+|++|.++|.+|++|+.+++|++|+|++|.+ .| .+|... +..+ + +++++|.+.+.+|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l-~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKM-R-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHH-H-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHH-H-hhHHHhhhccCchh
Confidence 3677888888888888888888888888888888866 22 344333 4444 5 77788877776666
Q ss_pred hhhhcCCCceEEEccCCcccccCCCCccCCCCccEEEC--cCCcccccCCCCCcCCCcCceEEecccccccc--------
Q 003301 89 DMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISL--AYNQFTERIPRGLGNLTSLKTLYLGFNNLTGE-------- 158 (832)
Q Consensus 89 ~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~L--s~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~-------- 158 (832)
.+...+..+..+++....+.. .....++.+.+ .+|++++ +|+.|+++++|++|+|++|++++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred hHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 554333334444444322221 00111222222 2455555 555555555555555555555543
Q ss_pred ---------cCcccc--CccccceecccccccccccCcccccCCcccEEEecCCC-CCC-CCCcccc----ccCCCCccE
Q 003301 159 ---------IPYEMG--NLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNA-LSG-SLPSSID----LVRLPNLEI 221 (832)
Q Consensus 159 ---------~p~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~----~~~l~~L~~ 221 (832)
+|..++ ++++|++|+|++|++.+.+|..|.++++|++|++++|+ +++ .+|..+. +..+++|++
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 555555 66666666666666655566666666666666666665 554 4554331 112356666
Q ss_pred EEccCCccccccCC--cccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCC-CcE
Q 003301 222 ISLAGNNFSGIIPS--FIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKN-LKL 298 (832)
Q Consensus 222 L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~-L~~ 298 (832)
|++++|+++ .+|. .|..+++|++|++++|++++.+| .|..+++|++|++++|.++.+ +..+..+++ |++
T Consensus 310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~l------p~~l~~l~~~L~~ 381 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI------PANFCGFTEQVEN 381 (636)
T ss_dssp EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEEC------CTTSEEECTTCCE
T ss_pred EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccc------cHhhhhhcccCcE
Confidence 666666666 4455 56667777777777777776666 666777777777777776642 334566666 777
Q ss_pred EeccCCCCCCCCCCcccccc-cccceEEeecCccccccccccc-------CcCcccEEEeecCcccccccccccCCCCCc
Q 003301 299 LDLSNNPINGVLPSSIGNLS-LSLSRIFISNCSIRGTIPKEIG-------NLINLRELGLWGNELIGSIPITFGKLQNLQ 370 (832)
Q Consensus 299 L~L~~N~l~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 370 (832)
|++++|+++ .+|..+.... .+|++|++++|.+++..|..+. .+++|++|+|++|++++..+..+..+++|+
T Consensus 382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 777777766 4454443321 1344444444444444444444 444555555555555533333344455555
Q ss_pred eEEccCCccCCCCchh-hcCC-------CCCcEEEecCCcCCCCCcccCC--CCCCCCeEeCCCCcCCCCCCcccccCcc
Q 003301 371 GLDLVNNKLEGPIPNG-LCQL-------ARLSVLYMDGNKLSGPIPPCIG--DLTSLRLLSLASNELNSVIPSTFWNLKD 440 (832)
Q Consensus 371 ~L~Ls~N~l~~~~~~~-~~~l-------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 440 (832)
+|+|++|+++ .+|.. +... ++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++
T Consensus 461 ~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 461 SINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp EEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred EEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence 5555555555 33322 2111 14444444444444 3333333 44444444444444444 3444444444
Q ss_pred cceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCC
Q 003301 441 ILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSN 520 (832)
Q Consensus 441 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 520 (832)
|+.|+|++|+ ++++|++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|||++
T Consensus 538 L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~ 596 (636)
T 4eco_A 538 LKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKD 596 (636)
T ss_dssp CCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCS
T ss_pred CCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcC
Confidence 4444444443 2355666666666666666666666666666 35555544 5666666666
Q ss_pred Ccccc
Q 003301 521 NSLSG 525 (832)
Q Consensus 521 N~l~~ 525 (832)
|++..
T Consensus 597 N~l~~ 601 (636)
T 4eco_A 597 NPNIS 601 (636)
T ss_dssp CTTCE
T ss_pred CCCcc
Confidence 65543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-51 Score=483.21 Aligned_cols=440 Identities=18% Similarity=0.253 Sum_probs=369.6
Q ss_pred CCceEEEccCCcccccCCCCccCCCCccEEECcCCccc------c------cCCCCCcCCCcCceEEecccccccccCcc
Q 003301 95 PLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFT------E------RIPRGLGNLTSLKTLYLGFNNLTGEIPYE 162 (832)
Q Consensus 95 ~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~------~------~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~ 162 (832)
.+++.|+|++|.++|.+|..++++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 35777777777777777777777777777777777652 1 122222 44566 777777777666665
Q ss_pred ccCc-c------------------ccceeccc--ccccccccCcccccCCcccEEEecCCCCCCC---------------
Q 003301 163 MGNL-R------------------NLEILGLQ--LNKLVGFVPTSIFNLSAMKTLALPSNALSGS--------------- 206 (832)
Q Consensus 163 ~~~l-~------------------~L~~L~L~--~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------- 206 (832)
+..+ . .++.+.+. .|++++ +|.+++++++|++|+|++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 5521 1 23333332 689998 899999999999999999999975
Q ss_pred --CCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCc-Ccc-cCCccccCc------cccceeeccccc
Q 003301 207 --LPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENS-FSG-FIPNTLGNL------RKLEWLRLSYNF 276 (832)
Q Consensus 207 --~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-i~~-~~~~~~~~l------~~L~~L~L~~N~ 276 (832)
+|..+.+..+++|++|+|++|++.+.+|..|.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|+
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 8887754589999999999999999999999999999999999998 998 788888877 999999999999
Q ss_pred CCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCc-ccEEEeecCcc
Q 003301 277 LTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLIN-LRELGLWGNEL 355 (832)
Q Consensus 277 l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l 355 (832)
++.++.. ..+..+++|++|++++|++.|.+| .+..+. +|++|++++|+++ .+|..+..+++ |++|++++|++
T Consensus 317 l~~ip~~----~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 317 LKTFPVE----TSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CSSCCCH----HHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred CCccCch----hhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 9864430 057899999999999999998888 888777 9999999999999 78888999999 99999999999
Q ss_pred cccccccccCCC--CCceEEccCCccCCCCchhhc-------CCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCc
Q 003301 356 IGSIPITFGKLQ--NLQGLDLVNNKLEGPIPNGLC-------QLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNE 426 (832)
Q Consensus 356 ~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 426 (832)
+ .+|..+..++ +|++|++++|++++.+|..+. .+++|++|++++|++++..+..+..+++|+.|+|++|+
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 9 6788887755 899999999999999998888 78899999999999996555557779999999999999
Q ss_pred CCCCCCcccccCc-------ccceeeecCCcccCCCccccc--cccccceecccCcccCCccCCccccccccceeec---
Q 003301 427 LNSVIPSTFWNLK-------DILSLNFSSNFLNGSLPEDIG--NLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSL--- 494 (832)
Q Consensus 427 l~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--- 494 (832)
++.+.+..+.... +|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|
T Consensus 469 l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred CCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 9966655665443 9999999999999 6788887 99999999999999997 8999999999999999
Q ss_pred ---ccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccC
Q 003301 495 ---RDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEI 551 (832)
Q Consensus 495 ---s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 551 (832)
++|++.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++.+.-
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 56888999999999999999999999999 57888766 79999999999988643
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.5e-50 Score=473.30 Aligned_cols=528 Identities=20% Similarity=0.177 Sum_probs=383.7
Q ss_pred CCCcceeccCccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCccccccccccccccccc
Q 003301 5 SFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTG 84 (832)
Q Consensus 5 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~ 84 (832)
++.+++ .+|+.+- +.+++||||+|+|++..|.+|..+++|++|+|++|++++..|..+..+++| ++|+|++|+|+
T Consensus 39 ~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L-~~L~Ls~N~l~- 113 (635)
T 4g8a_A 39 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL-STLILTGNPIQ- 113 (635)
T ss_dssp TTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC-CEEECTTCCCC-
T ss_pred CCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCC-CEEEccCCcCC-
Confidence 344555 5666552 466777777777775555677777777777777777774444556777777 77777777777
Q ss_pred CCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCccccc-CCCCCcCCCcCceEEecccccccccCccc
Q 003301 85 SLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTER-IPRGLGNLTSLKTLYLGFNNLTGEIPYEM 163 (832)
Q Consensus 85 ~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~ 163 (832)
.+|...|.++++|++|+|++|++++..+..|+++++|++|+|++|++++. .|..++.+++|++|+|++|+|++..|..|
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 67776666777777777777777765556677777777777777777643 46667777777777777777776666677
Q ss_pred cCccccc----eecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCc------ccccc
Q 003301 164 GNLRNLE----ILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNN------FSGII 233 (832)
Q Consensus 164 ~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~------i~~~~ 233 (832)
..+++++ .++++.|.+..+.+..+ ....++.+++.+|.....++.. .+..+..++...+..+. +....
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~-~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKT-CIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHH-HHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccch-hhcCCccccccccccccccccccccccc
Confidence 6665544 46677777775444433 3445667777777654222221 13455566655554332 22333
Q ss_pred CCcccCCCCccEEEcCCCcCcc---cCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCC
Q 003301 234 PSFIFNASKLSVLELGENSFSG---FIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVL 310 (832)
Q Consensus 234 ~~~~~~l~~L~~L~L~~N~i~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 310 (832)
...+.....+...++..+.... ..+..+..+.+++.+++.+|.+..+. .+....+|+.|++++|.+.+..
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-------DFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-------GGGSCCCCSEEEEESCEESSCC
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-------ccccchhhhhhhcccccccCcC
Confidence 4444555556665555443322 23445666778888888888776532 3456678888999988887554
Q ss_pred CCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccc--cccccccCCCCCceEEccCCccCCCCchhhc
Q 003301 311 PSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIG--SIPITFGKLQNLQGLDLVNNKLEGPIPNGLC 388 (832)
Q Consensus 311 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 388 (832)
+..+ ..|+.+++..|.+... .....+++|+.|++++|.+.. ..+..+..+.+|+.|+++.|.+. ..+..+.
T Consensus 345 ~~~l----~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~ 417 (635)
T 4g8a_A 345 TLKL----KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFL 417 (635)
T ss_dssp CCBC----TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCT
T ss_pred cccc----hhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccccc
Confidence 4322 2688888888887643 334578889999999998753 34556677888999999999887 4566778
Q ss_pred CCCCCcEEEecCCcCCCCCc-ccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcc-cCCCccccccccccc
Q 003301 389 QLARLSVLYMDGNKLSGPIP-PCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFL-NGSLPEDIGNLKVVV 466 (832)
Q Consensus 389 ~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~ 466 (832)
.+++|+.+++++|......+ ..|..+++++.++++.|.+.+..+..+..++.|+.|++++|++ .+..|..|..+++|+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 88899999998887765544 4678889999999999999988888899999999999999874 445778889999999
Q ss_pred eecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhh-ccCCeeeCCCC
Q 003301 467 IIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKL-LYLKDLNLSFN 545 (832)
Q Consensus 467 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~l~l~~N 545 (832)
+|||++|++++..|.+|.++++|++|+|++|+|++..|..|+.+++|++|||++|+|++..|..+..+ ++|++|+|++|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99999999998888999999999999999999998888889999999999999999999999888887 68999999999
Q ss_pred cccccCCC
Q 003301 546 KLEGEIPR 553 (832)
Q Consensus 546 ~l~~~~p~ 553 (832)
+|.|.|.-
T Consensus 578 p~~C~C~~ 585 (635)
T 4g8a_A 578 DFACTCEH 585 (635)
T ss_dssp CBCCSGGG
T ss_pred CCcccCCc
Confidence 99988763
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-51 Score=471.81 Aligned_cols=456 Identities=21% Similarity=0.236 Sum_probs=318.1
Q ss_pred cEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECc
Q 003301 48 ELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLA 127 (832)
Q Consensus 48 ~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls 127 (832)
++|++++|+++ .+|..+. +++ ++||+++|.++ .++...+.++++|++|++++|++++..|+.|..+++|++|+|+
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L-~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKT-TILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTC-SEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccc-cEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 46777777777 5666555 455 66777777776 4554444467777777777777776656666677777777777
Q ss_pred CCcccccCCCCCcCCCcCceEEeccccccc-ccCccccCccccceecccccccccccCcccccCCcc--cEEEecCCCC-
Q 003301 128 YNQFTERIPRGLGNLTSLKTLYLGFNNLTG-EIPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAM--KTLALPSNAL- 203 (832)
Q Consensus 128 ~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~n~l- 203 (832)
+|+|++ +|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|++++ ..+..+++| ++|++++|.+
T Consensus 78 ~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 777663 4444 56667777777776664 345666666666666666666654 334555555 6666666665
Q ss_pred -CCCCCccccccCCCCccEEEccCCccccccCCcccCCC-CccEEEcCCCcCcccCC-ccccCccccceeeccccc----
Q 003301 204 -SGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNAS-KLSVLELGENSFSGFIP-NTLGNLRKLEWLRLSYNF---- 276 (832)
Q Consensus 204 -~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~---- 276 (832)
.+..|. .+..+. +...+++++|.+.+..+ ..+..+++|+.|++++|.
T Consensus 152 ~~~~~~~--------------------------~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 152 GEKEDPE--------------------------GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp TSSCCTT--------------------------TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred ccccccc--------------------------cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc
Confidence 444443 333332 23344555555544332 345556666666666664
Q ss_pred ---CCCCCCccccccccccCCCCcEEeccCCCCCCCCCCccccc--ccccceEEeecCcccccccccc-----cCcCccc
Q 003301 277 ---LTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNL--SLSLSRIFISNCSIRGTIPKEI-----GNLINLR 346 (832)
Q Consensus 277 ---l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~ 346 (832)
+.+ .++.+..+++|+.|++++|.+.+..+..+... ..+|++|++++|++++.+|..+ ..+++|+
T Consensus 206 ~~~~~~------~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~ 279 (520)
T 2z7x_B 206 CSYFLS------ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279 (520)
T ss_dssp THHHHH------HHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEE
T ss_pred cceeec------chhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeE
Confidence 221 12245666677777776666553322111110 1267778888888877777777 8888899
Q ss_pred EEEeecCccccccc-ccccCC---CCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeC
Q 003301 347 ELGLWGNELIGSIP-ITFGKL---QNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSL 422 (832)
Q Consensus 347 ~L~L~~N~l~~~~~-~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 422 (832)
.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++.+|..++.+++|+.|++
T Consensus 280 ~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 280 IHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp EEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred eccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 999999888 334 444444 67899999999887432 1257788999999999999888888999999999999
Q ss_pred CCCcCCC--CCCcccccCcccceeeecCCcccCCCcc-ccccccccceecccCcccCCccCCccccccccceeecccccc
Q 003301 423 ASNELNS--VIPSTFWNLKDILSLNFSSNFLNGSLPE-DIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGL 499 (832)
Q Consensus 423 ~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 499 (832)
++|++++ ..|..|..+++|++|++++|++++.+|. .+..+++|+.|++++|++++..|..+. ++|+.|+|++|++
T Consensus 356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI 433 (520)
T ss_dssp CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC
T ss_pred cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc
Confidence 9999987 4557788899999999999999874554 488889999999999999887777665 7899999999999
Q ss_pred cccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCC
Q 003301 500 QGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 500 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
+ .+|..+..+++|+.|+|++|++++..+..+..+++|++|++++|+++|.|+.
T Consensus 434 ~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 434 K-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred c-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 8 7888888999999999999999954434488899999999999999998874
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.8e-50 Score=477.05 Aligned_cols=472 Identities=21% Similarity=0.211 Sum_probs=298.4
Q ss_pred cccCeEeccCCccccCCCccccccccCcEEEc-cCCcCCCCCCCcccCc----ccc-ccc---------ccc-ccccccc
Q 003301 21 TMLKKLGLGYNKLRGEIPQELGNLAELELVSL-TNNFLSGTIPSTIFNL----SSL-STG---------MDF-SNNSLTG 84 (832)
Q Consensus 21 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l-~~n~l~~~~p~~l~~l----~~l-~~~---------L~l-s~n~l~~ 84 (832)
.++..|+|++|.+.|.+|+.|+.|++|++|+| ++|.+.|..|-..... +.. +.. ++. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56888899999998888888999999999999 8888877644321111 000 000 000 0000000
Q ss_pred CCChhhh----------hcCCCceEEEccC--CcccccCCCCccCCCCccEEECcCCcccc-----------------cC
Q 003301 85 SLPDDMC----------RRLPLIKGLYMSN--NKLTGPIPNNIWQCKELIVISLAYNQFTE-----------------RI 135 (832)
Q Consensus 85 ~lp~~~~----------~~l~~L~~L~l~~--N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~-----------------~~ 135 (832)
.++..+. .....++.+.+.. |++++ +|..|+++++|++|+|++|++++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0000000 1222334444443 78886 78888888888888888888886 36
Q ss_pred CCCCc--CCCcCceEEecccccccccCccccCccccceecccccc-ccc-ccCcccccCC-------cccEEEecCCCCC
Q 003301 136 PRGLG--NLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLNK-LVG-FVPTSIFNLS-------AMKTLALPSNALS 204 (832)
Q Consensus 136 p~~~~--~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~ 204 (832)
|+.++ ++++|++|+|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..+.+++ +|++|+|++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 77666 77777777777777776777777777777777777776 665 5665555444 5666666666655
Q ss_pred CCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccc-cceeecccccCCCCCCc
Q 003301 205 GSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRK-LEWLRLSYNFLTSSTSE 283 (832)
Q Consensus 205 ~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~ 283 (832)
.+|..-.+..+++|++|+|++|+++ .+| .|..+++|++|+|++|+++ .+|..+..+++ |++|+|++|.++.++.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~- 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN- 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS-
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch-
Confidence 4554111245555555555555555 333 4555555555555555555 44444555555 5555555555543322
Q ss_pred cccccccccC--CCCcEEeccCCCCCCCCCCcccccccccceEEeecCccccccccccc--CcCcccEEEeecCcccccc
Q 003301 284 LSFLSSWANC--KNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIG--NLINLRELGLWGNELIGSI 359 (832)
Q Consensus 284 ~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~ 359 (832)
.+..+ ++|+.|++++|++.+.+|... ..+. .+++|+.|+|++|++....
T Consensus 637 -----~~~~~~~~~L~~L~Ls~N~l~g~ip~l~----------------------~~l~~~~~~~L~~L~Ls~N~L~~lp 689 (876)
T 4ecn_A 637 -----IFNAKSVYVMGSVDFSYNKIGSEGRNIS----------------------CSMDDYKGINASTVTLSYNEIQKFP 689 (876)
T ss_dssp -----CCCTTCSSCEEEEECCSSCTTTTSSSCS----------------------SCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred -----hhhccccCCCCEEECcCCcCCCccccch----------------------hhhccccCCCcCEEEccCCcCCccC
Confidence 12222 224555555554443332211 1111 2346777777777777444
Q ss_pred cccccCCCCCceEEccCCccCCCCchhhcCC--------CCCcEEEecCCcCCCCCcccCC--CCCCCCeEeCCCCcCCC
Q 003301 360 PITFGKLQNLQGLDLVNNKLEGPIPNGLCQL--------ARLSVLYMDGNKLSGPIPPCIG--DLTSLRLLSLASNELNS 429 (832)
Q Consensus 360 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~ 429 (832)
+..+..+++|+.|+|++|+|+ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc
Confidence 444556777777777777777 455443332 26777777777777 5666665 77777777777777776
Q ss_pred CCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccC
Q 003301 430 VIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGG 509 (832)
Q Consensus 430 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 509 (832)
+|..+..+++|+.|+|++|+ ++++|++.+.+|..|.++++|+.|+|++|++ +.+|..+.
T Consensus 768 -lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~- 826 (876)
T 4ecn_A 768 -FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT- 826 (876)
T ss_dssp -CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred -cchhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-
Confidence 56666677777777777775 5677899999999999999999999999999 58888876
Q ss_pred CCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccc
Q 003301 510 LVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEG 549 (832)
Q Consensus 510 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 549 (832)
++|+.|||++|++....+..+.....+..+.|.+|++..
T Consensus 827 -~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 827 -PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp -SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred -CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 699999999999998888888887788888888887764
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.4e-50 Score=459.73 Aligned_cols=457 Identities=22% Similarity=0.266 Sum_probs=342.2
Q ss_pred CeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEEEcc
Q 003301 24 KKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMS 103 (832)
Q Consensus 24 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~ 103 (832)
++||+++|+++ .+|..+. ++|++|+|++|.+++..|..+..+++| ++|++++|++++..|..+ .++++|++|+|+
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKL-RILIISHNRIQYLDISVF-KFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTC-CEEECCSSCCCEEEGGGG-TTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccc-cEEecCCCccCCcChHHh-hcccCCCEEecC
Confidence 58999999999 7888776 899999999999996666789999999 999999999995445554 599999999999
Q ss_pred CCcccccCCCCccCCCCccEEECcCCcccc-cCCCCCcCCCcCceEEecccccccccCccccCcccc--ceeccccccc-
Q 003301 104 NNKLTGPIPNNIWQCKELIVISLAYNQFTE-RIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNL--EILGLQLNKL- 179 (832)
Q Consensus 104 ~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L--~~L~L~~N~l- 179 (832)
+|+++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|++++ ..+..+++| ++|++++|++
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 99999 56766 89999999999999987 478999999999999999999985 467788888 9999999999
Q ss_pred -ccccCcccccCC-cccEEEecCCCCCCCCCccccccCCCCccEEEccCCc-------cccccCCcccCCCCccEEEcCC
Q 003301 180 -VGFVPTSIFNLS-AMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNN-------FSGIIPSFIFNASKLSVLELGE 250 (832)
Q Consensus 180 -~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~L~~ 250 (832)
.+..|..+..+. +...+++++|.+.+.++... +..+++|+.|++++|. +.+.++ .+..+++|++|++++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS-VKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCC-CTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhh-hhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 778888887766 34467788888876665433 4566777777777765 444444 455556666666665
Q ss_pred CcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcc-----cccccccceEE
Q 003301 251 NSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSI-----GNLSLSLSRIF 325 (832)
Q Consensus 251 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~~~~~L~~L~ 325 (832)
|.+++..+..+. .. ..+++|++|++++|++.+.+|..+ ..+. +|+.++
T Consensus 230 ~~l~~~~~~~~~-------------------------~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~-~L~~l~ 282 (520)
T 2z7x_B 230 IETTWNSFIRIL-------------------------QL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK-ALSIHQ 282 (520)
T ss_dssp EEEEHHHHHHHH-------------------------HH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC-EEEEEE
T ss_pred cccCHHHHHHHH-------------------------HH-hhhCcccEEEeecccccCccccchhhcccccCc-eeEecc
Confidence 555432211111 00 012344555555555444444444 3333 555555
Q ss_pred eecCccccccc-ccccCc---CcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCC
Q 003301 326 ISNCSIRGTIP-KEIGNL---INLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGN 401 (832)
Q Consensus 326 l~~n~l~~~~~-~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 401 (832)
+++|.+ .+| ..+..+ ++|+.|++++|.+.+.. .+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 283 l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 283 VVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358 (520)
T ss_dssp EEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS
T ss_pred ccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC
Confidence 555555 233 333333 45777777777765322 1256777888888888887777777777888888888888
Q ss_pred cCCC--CCcccCCCCCCCCeEeCCCCcCCC-CCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCc
Q 003301 402 KLSG--PIPPCIGDLTSLRLLSLASNELNS-VIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGD 478 (832)
Q Consensus 402 ~l~~--~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 478 (832)
++++ .+|..++.+++|++|++++|.+++ +.+..|..+++|++|++++|++++..|..+. ++|+.|+|++|+++ .
T Consensus 359 ~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ 435 (520)
T 2z7x_B 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-S 435 (520)
T ss_dssp CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-C
T ss_pred ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-c
Confidence 8875 445667888888888888888887 4444577888888888888888877776664 78999999999998 7
Q ss_pred cCCccccccccceeecccccccccCCcc-ccCCCCCCeeccCCCcccccCc
Q 003301 479 IPTAIGGLMNLQDLSLRDNGLQGSIPKS-IGGLVSLESLDLSNNSLSGNIP 528 (832)
Q Consensus 479 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p 528 (832)
+|..+.++++|+.|+|++|++++ +|.. |..+++|+.|+|++|++++..+
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 88888899999999999999995 5554 9999999999999999998665
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-49 Score=472.26 Aligned_cols=429 Identities=19% Similarity=0.238 Sum_probs=329.1
Q ss_pred ccCCCCcceeccCccccCccccCeEec-cCCccccCCCcccc--------------------------------------
Q 003301 2 LSLSFNDLSGAIPKEIGNLTMLKKLGL-GYNKLRGEIPQELG-------------------------------------- 42 (832)
Q Consensus 2 ldl~~n~~~~~~~~~~~~l~~L~~L~l-s~n~l~~~~p~~~~-------------------------------------- 42 (832)
|||++|.++|.+|+++++|++|++|+| ++|.++|..|-...
T Consensus 328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 799999999999999999999999999 89988776432211
Q ss_pred -------------ccccCcEEEcc--CCcCCCCCCCcccCccccccccccccccccc-----------------CCChhh
Q 003301 43 -------------NLAELELVSLT--NNFLSGTIPSTIFNLSSLSTGMDFSNNSLTG-----------------SLPDDM 90 (832)
Q Consensus 43 -------------~l~~L~~L~l~--~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~-----------------~lp~~~ 90 (832)
....++.+.+. +|.+++ +|+.++++++| ++|+|++|.++| .+|..+
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L-~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKL-QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTC-CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred hhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCC-CEEECcCCcCCCCcccccccccccccccccCChhh
Confidence 11123333333 378886 89889999998 999999999997 388876
Q ss_pred -hhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCc-ccc-cCCCCCcCCC-------cCceEEecccccccccC
Q 003301 91 -CRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQ-FTE-RIPRGLGNLT-------SLKTLYLGFNNLTGEIP 160 (832)
Q Consensus 91 -~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~-~~p~~~~~l~-------~L~~L~Ls~N~i~~~~p 160 (832)
|.++++|++|+|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..++.++ +|++|+|++|+++ .+|
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 5589999999999999998999999999999999999998 887 6787666555 9999999999999 788
Q ss_pred c--cccCccccceecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCC-ccEEEccCCccccccCCcc
Q 003301 161 Y--EMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPN-LEIISLAGNNFSGIIPSFI 237 (832)
Q Consensus 161 ~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~ 237 (832)
. .|+++++|+.|+|++|+++ .+| .|.++++|++|+|++|.+. .+|..+ ..+++ |++|+|++|+++ .+|..+
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTS--CEECTTCCEEECCSSCCC-SCCSCC
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHH--hhccccCCEEECcCCCCC-cCchhh
Confidence 8 8999999999999999998 567 8999999999999999998 777654 67888 999999999998 567777
Q ss_pred cCCCC--ccEEEcCCCcCcccCCccc---c--CccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCC
Q 003301 238 FNASK--LSVLELGENSFSGFIPNTL---G--NLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVL 310 (832)
Q Consensus 238 ~~l~~--L~~L~L~~N~i~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 310 (832)
..++. |+.|+|++|++++.+|... . .+++|++|+|++|.++.++..+ +..+++|+.|+|++|++. .+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~-----~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL-----FATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH-----HHTTCCCSEEECCSCCCS-CC
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH-----HccCCCCCEEECCCCcCC-cc
Confidence 76654 9999999999988766433 2 3458999999999998755432 457899999999999998 56
Q ss_pred CCccccccc-------ccceEEeecCccccccccccc--CcCcccEEEeecCcccccccccccCCCCCceEEccCC----
Q 003301 311 PSSIGNLSL-------SLSRIFISNCSIRGTIPKEIG--NLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNN---- 377 (832)
Q Consensus 311 ~~~~~~~~~-------~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N---- 377 (832)
|..+..... +|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 665544332 7999999999999 6788886 99999999999999997 6888899999999999874
Q ss_pred --ccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCc
Q 003301 378 --KLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNF 450 (832)
Q Consensus 378 --~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 450 (832)
++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++..+.+..|.....+..+.|++|+
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred cccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 44445555555555555555555555 34444433 345555555555544444444433333334444443
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.1e-48 Score=457.60 Aligned_cols=546 Identities=20% Similarity=0.215 Sum_probs=426.5
Q ss_pred ccCccccCccc---cCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccccccCCCh
Q 003301 12 AIPKEIGNLTM---LKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPD 88 (832)
Q Consensus 12 ~~~~~~~~l~~---L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~ 88 (832)
.+|++...... -...+-++.+++ .+|+.+. +++++|||++|+|++..|..+..+++| ++|||++|+|+ .+|+
T Consensus 19 ~~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L-~~L~Ls~N~i~-~i~~ 93 (635)
T 4g8a_A 19 SIPESWEPCVEVVPNITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPEL-QVLDLSRCEIQ-TIED 93 (635)
T ss_dssp ------CCSEEEETTTEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTC-CEEECTTCCCC-EECT
T ss_pred CCCCCCCCccccCCCCEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCC-CEEECCCCcCC-CcCh
Confidence 35555443321 245677777787 7887653 478899999999985445678888888 88999999988 6777
Q ss_pred hhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEeccccccc-ccCccccCcc
Q 003301 89 DMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTG-EIPYEMGNLR 167 (832)
Q Consensus 89 ~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~ 167 (832)
+.|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|+++++|++|+|++|.+++ ..|..++.++
T Consensus 94 ~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 94 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred hHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence 777788999999999999986666778889999999999999987777778889999999999998875 3577788889
Q ss_pred ccceecccccccccccCcccccCCccc----EEEecCCCCCCCCCccccccCCCCccEEEccCCccc-cccCCcccCCCC
Q 003301 168 NLEILGLQLNKLVGFVPTSIFNLSAMK----TLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFS-GIIPSFIFNASK 242 (832)
Q Consensus 168 ~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~ 242 (832)
+|++|++++|++++..+..|..+.+++ .++++.|.+....+..+ ....++.+++++|... ...+..+..+..
T Consensus 174 ~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~---~~~~~~~l~l~~n~~~~~~~~~~~~~l~~ 250 (635)
T 4g8a_A 174 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLHKLTLRNNFDSLNVMKTCIQGLAG 250 (635)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT---TTCEEEEEEEESCCSSHHHHHHHHHTTTT
T ss_pred hhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc---cchhhhhhhhhcccccccccchhhcCCcc
Confidence 999999999998888787777665544 67888888874444332 4456778888888665 234455667777
Q ss_pred ccEEEcCCC------cCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccc
Q 003301 243 LSVLELGEN------SFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGN 316 (832)
Q Consensus 243 L~~L~L~~N------~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 316 (832)
++...+..+ .+.......+..+..+....+..+....... .....+..+.+++.+++.+|.+....+ +..
T Consensus 251 l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~ 326 (635)
T 4g8a_A 251 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD--GIIDLFNCLTNVSSFSLVSVTIERVKD--FSY 326 (635)
T ss_dssp CEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE--ECTTTTGGGTTCSEEEEESCEEEECGG--GGS
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhhccccc--chhhhhhhhcccccccccccccccccc--ccc
Confidence 776665433 2333445556667777777777665543222 123446778899999999998764432 222
Q ss_pred cccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCC--CCchhhcCCCCCc
Q 003301 317 LSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEG--PIPNGLCQLARLS 394 (832)
Q Consensus 317 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~ 394 (832)
.. .++.|++.+|.+.+..+. .+..|+.+++++|.+... ..+..+++|+.|++++|.+.. ..+..+..+.+|+
T Consensus 327 ~~-~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 400 (635)
T 4g8a_A 327 NF-GWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK 400 (635)
T ss_dssp CC-CCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCC
T ss_pred ch-hhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhh
Confidence 33 799999999999865543 456789999999987643 345678999999999999853 4567788889999
Q ss_pred EEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCC-CcccccCcccceeeecCCcccCCCccccccccccceecccCc
Q 003301 395 VLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVI-PSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRN 473 (832)
Q Consensus 395 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 473 (832)
+++++.|.+. ..+..+..+++|+.+++++|...... +..|..+.+++.++++.|.+.+..+..+..++.|+.|+|++|
T Consensus 401 ~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N 479 (635)
T 4g8a_A 401 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479 (635)
T ss_dssp EEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred hhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence 9999999987 45667889999999999998876654 456899999999999999999999999999999999999999
Q ss_pred cc-CCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCC
Q 003301 474 NL-SGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 474 ~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
++ .+..|..|..+++|++|+|++|+|++.+|..|+++++|++|+|++|+|++..|..|..+++|++|+|++|++++.+|
T Consensus 480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 85 44688999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CC-CCC-CCcCCCcccCCCCCCCCcc
Q 003301 553 RG-GPF-ANFSNRSFMGNDLLCGLAQ 576 (832)
Q Consensus 553 ~~-~~~-~~~~~~~~~~n~~~c~~~~ 576 (832)
.. ..+ .++......+||+.|.|..
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred HHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 74 223 3455567899999998764
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-48 Score=450.63 Aligned_cols=460 Identities=21% Similarity=0.223 Sum_probs=302.2
Q ss_pred ccccccccccccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecc
Q 003301 73 TGMDFSNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGF 152 (832)
Q Consensus 73 ~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~ 152 (832)
+++|+++|+++ .+|..+. ++|++|++++|++++..|..|..+++|++|+|++|+|++..|+.|.++++|++|+|++
T Consensus 34 ~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 34444444444 3444332 4455555555555544444555555555555555555554455555555555555555
Q ss_pred cccccccCccccCccccceecccccccccc-cCcccccCCcccEEEecCCCCCCCCCccccccCCCCc--cEEEccCCcc
Q 003301 153 NNLTGEIPYEMGNLRNLEILGLQLNKLVGF-VPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNL--EIISLAGNNF 229 (832)
Q Consensus 153 N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L--~~L~Ls~n~i 229 (832)
|+|+ .+|.. .+++|++|++++|++++. .|..|.++++|++|++++|.+.+. ++..+++| ++|++++|++
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccc
Confidence 5555 34433 455555555555555542 234555555555555555555421 12233333 6666666665
Q ss_pred --ccccCCcccCCC-CccEEEcCCCcCcccCCc-cccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCC
Q 003301 230 --SGIIPSFIFNAS-KLSVLELGENSFSGFIPN-TLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNP 305 (832)
Q Consensus 230 --~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 305 (832)
++..|..+..+. ....+++++|.+.+..++ .+..+++|+.|++++|..... .-...+..+..+++|+.|+++++.
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-RLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-HHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-hHHHHHHHHhccCcceEEEecCCc
Confidence 555555555443 122456666766654433 355677777777777642100 000123346667777777777776
Q ss_pred CCCCCCCcccc--cccccceEEeecCcccccccccc-----cCcCcccEEEeecCccccccc-ccccC---CCCCceEEc
Q 003301 306 INGVLPSSIGN--LSLSLSRIFISNCSIRGTIPKEI-----GNLINLRELGLWGNELIGSIP-ITFGK---LQNLQGLDL 374 (832)
Q Consensus 306 l~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~---l~~L~~L~L 374 (832)
+.+.....+.. ...+|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..+|++|++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 65321111100 01278888888888887788776 7777788888887776 233 23322 257899999
Q ss_pred cCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCC--CcccccCcccceeeecCCccc
Q 003301 375 VNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVI--PSTFWNLKDILSLNFSSNFLN 452 (832)
Q Consensus 375 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~ 452 (832)
++|.+.... ....+++|++|++++|++++.+|..++++++|+.|++++|+++++. |..|.++++|++|++++|+++
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 999886432 1257788999999999999888889999999999999999998754 467889999999999999999
Q ss_pred CCCc-cccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchh-
Q 003301 453 GSLP-EDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTS- 530 (832)
Q Consensus 453 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~- 530 (832)
+.+| ..+..+++|+.|+|++|++++..|..+. ++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++ +|..
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~ 492 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGV 492 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTS
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHH
Confidence 8444 4588899999999999999887777665 68999999999998 688777799999999999999995 5554
Q ss_pred hhhhccCCeeeCCCCcccccCCC
Q 003301 531 MEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 531 ~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
+..+++|+.|++++|+|+|.||.
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHHH
T ss_pred HhcCCCCCEEEecCCCcCCCcch
Confidence 88999999999999999998875
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.8e-47 Score=437.65 Aligned_cols=458 Identities=21% Similarity=0.269 Sum_probs=319.1
Q ss_pred cEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECc
Q 003301 48 ELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLA 127 (832)
Q Consensus 48 ~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls 127 (832)
+++++++|+++ .+|..+. +++ ++||+++|.++ .+|...+.++++|++|+|++|++++..|+.|..+++|++|+|+
T Consensus 34 ~~l~ls~~~L~-~ip~~~~--~~L-~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKDLP--PRT-KALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECTTSCCC-SCCTTSC--TTC-CEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcCCCCCc-cCCCCCC--CCc-CEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 56666666666 4665443 444 66666666666 4444444466667777777777666666666666777777777
Q ss_pred CCcccccCCCCCcCCCcCceEEecccccccc-cCccccCccccceecccccccccccCcccccCCcc--cEEEecCCCC-
Q 003301 128 YNQFTERIPRGLGNLTSLKTLYLGFNNLTGE-IPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAM--KTLALPSNAL- 203 (832)
Q Consensus 128 ~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~n~l- 203 (832)
+|+|+ .+|.. .+++|++|+|++|++++. +|..|+++++|++|++++|++++. .+..+++| ++|++++|.+
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 77766 34444 566677777777776642 345666677777777777766542 34444444 7777777766
Q ss_pred -CCCCCccccccCCCCccEEEccCCccccccCC-cccCCCCccEEEcCCCc-----CcccCCccccCccccceeeccccc
Q 003301 204 -SGSLPSSIDLVRLPNLEIISLAGNNFSGIIPS-FIFNASKLSVLELGENS-----FSGFIPNTLGNLRKLEWLRLSYNF 276 (832)
Q Consensus 204 -~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~-----i~~~~~~~~~~l~~L~~L~L~~N~ 276 (832)
++..|..+.-.....+ .+++++|.+.+..+. .+..+++|+.|++++|. +.+ ....+..+++|+.|+++++.
T Consensus 183 ~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 183 IKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEE
T ss_pred ccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCc
Confidence 5555554421111122 456666666654333 34556777777777774 221 12345667777777777776
Q ss_pred CCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcc-----cccccccceEEeecCccccccc-ccccCc---CcccE
Q 003301 277 LTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSI-----GNLSLSLSRIFISNCSIRGTIP-KEIGNL---INLRE 347 (832)
Q Consensus 277 l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~ 347 (832)
+...... .++. ....++|++|++++|.+.+.+|..+ ..+. .|+.++++.+.+ .+| ..+..+ .+|++
T Consensus 261 l~~~~~~-~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~-~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 261 TTWKCSV-KLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALK-SLMIEHVKNQVF--LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp ECHHHHH-HHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC-EEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred CcHHHHH-HHHH-hhhcccccEEEEeccEeeccccchhhhcccccch-heehhhccccee--ecChhhhhhhhccCcceE
Confidence 6541111 0111 1223588888888888887777776 3333 455555566665 233 223222 57999
Q ss_pred EEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCC--cccCCCCCCCCeEeCCCC
Q 003301 348 LGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPI--PPCIGDLTSLRLLSLASN 425 (832)
Q Consensus 348 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N 425 (832)
|++++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++.. |..|..+++|+.|++++|
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 999999876432 1268899999999999999888999999999999999999999643 567999999999999999
Q ss_pred cCCC-CCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCC
Q 003301 426 ELNS-VIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIP 504 (832)
Q Consensus 426 ~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 504 (832)
++++ +.+..|..+++|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+.++++|+.|+|++|++++ +|
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~ 489 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VP 489 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CC
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CC
Confidence 9998 5556689999999999999999887776655 78999999999999 677777799999999999999995 55
Q ss_pred cc-ccCCCCCCeeccCCCcccccCch
Q 003301 505 KS-IGGLVSLESLDLSNNSLSGNIPT 529 (832)
Q Consensus 505 ~~-~~~l~~L~~L~Ls~N~l~~~~p~ 529 (832)
.. |+.+++|+.|+|++|++++..|.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred HHHHhcCCCCCEEEecCCCcCCCcch
Confidence 55 99999999999999999987664
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.4e-44 Score=402.66 Aligned_cols=426 Identities=24% Similarity=0.265 Sum_probs=226.3
Q ss_pred CccccCccccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhc
Q 003301 14 PKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRR 93 (832)
Q Consensus 14 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~ 93 (832)
.|.--+.++|++|++++|++ |.+|+.++++++|++|++++|.+.|.+|+.++++.++ +.++++++..
T Consensus 4 ~p~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L-~~l~l~~c~~----------- 70 (454)
T 1jl5_A 4 NPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM-AVSRLRDCLD----------- 70 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHH-HHHHHHHHHH-----------
T ss_pred cccccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhc-chhhhhhhhc-----------
Confidence 34444568999999999999 6999999999999999999999999999999999888 7777766532
Q ss_pred CCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceec
Q 003301 94 LPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILG 173 (832)
Q Consensus 94 l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~ 173 (832)
.++++|++++|++++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++ +|... ++|++|+
T Consensus 71 -~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~~---~~L~~L~ 137 (454)
T 1jl5_A 71 -RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDLP---PLLEYLG 137 (454)
T ss_dssp -HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSCC---TTCCEEE
T ss_pred -cCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCCC---CCCCEEE
Confidence 457888888888884 4542 3678888888888886 6653 3778888888888874 33221 6788888
Q ss_pred ccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcC
Q 003301 174 LQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSF 253 (832)
Q Consensus 174 L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i 253 (832)
+++|++++ +| +|.++++|++|++++|++++ +|... ++|++|++++|+++++ | .+.++++|++|++++|++
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~-----~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP-----PSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC-----TTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCC
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc-----ccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcC
Confidence 88888886 55 58888888888888888874 55432 4788888888888764 4 477788888888888887
Q ss_pred cccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccc
Q 003301 254 SGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRG 333 (832)
Q Consensus 254 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 333 (832)
+++ |... ++|++|++++|.++.++ .+..+++|++|++++|++++ +|..+ .+|++|++++|++++
T Consensus 208 ~~l-~~~~---~~L~~L~l~~n~l~~lp-------~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 208 KKL-PDLP---LSLESIVAGNNILEELP-------ELQNLPFLTTIYADNNLLKT-LPDLP----PSLEALNVRDNYLTD 271 (454)
T ss_dssp SSC-CCCC---TTCCEEECCSSCCSSCC-------CCTTCTTCCEEECCSSCCSS-CCSCC----TTCCEEECCSSCCSC
T ss_pred CcC-CCCc---CcccEEECcCCcCCccc-------ccCCCCCCCEEECCCCcCCc-ccccc----cccCEEECCCCcccc
Confidence 753 3322 47788888888777533 25677777888887777764 33211 245555555555553
Q ss_pred cccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCC
Q 003301 334 TIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGD 413 (832)
Q Consensus 334 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 413 (832)
+|.. +++|++|++++|++++. |. . .++|++|++++|++++ ++ .
T Consensus 272 -l~~~---~~~L~~L~ls~N~l~~l-~~---------------------~------~~~L~~L~l~~N~l~~-i~----~ 314 (454)
T 1jl5_A 272 -LPEL---PQSLTFLDVSENIFSGL-SE---------------------L------PPNLYYLNASSNEIRS-LC----D 314 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSEE-SC---------------------C------CTTCCEEECCSSCCSE-EC----C
T ss_pred -cCcc---cCcCCEEECcCCccCcc-cC---------------------c------CCcCCEEECcCCcCCc-cc----C
Confidence 2221 23455555555554431 11 0 1344455555555442 11 1
Q ss_pred C-CCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCC--ccCCccccccccc
Q 003301 414 L-TSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSG--DIPTAIGGLMNLQ 490 (832)
Q Consensus 414 l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~ 490 (832)
+ ++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++|++++|++++ .+|.++..
T Consensus 315 ~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~----- 381 (454)
T 1jl5_A 315 LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED----- 381 (454)
T ss_dssp CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-----
T ss_pred CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh-----
Confidence 1 355555555555554 2222 3556666666666663 444 35667777777777776 55665543
Q ss_pred eeecccccccccCCccccCCCCCCeeccCCCcccc--cCchhhhhhccCCeeeCCCCcccccCCC
Q 003301 491 DLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSG--NIPTSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 491 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
|+.|.+.|.+|.. +++|+.||+++|++++ .+|.+ ++.|.+++|.+.+.+|.
T Consensus 382 ---L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 382 ---LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ---EECCC---------------------------------------------------------
T ss_pred ---hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 2346667777763 4788889999999887 66654 45667888888887765
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-44 Score=405.12 Aligned_cols=376 Identities=22% Similarity=0.241 Sum_probs=212.1
Q ss_pred CCccEEECcCCcccccCCCCCcCCCcCceEEeccccccccc-CccccCccccceecccccccccccCcccccCCcccEEE
Q 003301 119 KELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEI-PYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLA 197 (832)
Q Consensus 119 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 197 (832)
++|++|+|++|++++..|..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..|.+|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34444444444444444444444444555555544443222 33444455555555555555444444455555555555
Q ss_pred ecCCCCCCCCCccccccCCCCccEEEccCCccccccCCc-ccCCCCccEEEcCCCcCcccCCccccCc--cccceeeccc
Q 003301 198 LPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSF-IFNASKLSVLELGENSFSGFIPNTLGNL--RKLEWLRLSY 274 (832)
Q Consensus 198 L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l--~~L~~L~L~~ 274 (832)
|++|.+++.+|....+..+++|++|+|++|++++..|.. |.++++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 555555433332212344455555555555555444443 4556666666666666665555555443 3445555555
Q ss_pred ccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCc
Q 003301 275 NFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNE 354 (832)
Q Consensus 275 N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 354 (832)
|.+..++.. .+.. .....+..+++|++|++++|+
T Consensus 190 n~l~~~~~~-----------------------------~~~~-----------------~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 190 ITLQDMNEY-----------------------------WLGW-----------------EKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp CBCTTCSTT-----------------------------CTTH-----------------HHHCCTTTTCEEEEEECTTSC
T ss_pred Ccccccchh-----------------------------hccc-----------------cccccccccceeeeEecCCCc
Confidence 544442221 1100 001112233444444444444
Q ss_pred ccccccccccCC---CCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCC--CCCCCeEeCCCCcCCC
Q 003301 355 LIGSIPITFGKL---QNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGD--LTSLRLLSLASNELNS 429 (832)
Q Consensus 355 l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~--l~~L~~L~L~~N~l~~ 429 (832)
+.+..|..+... ++|+.|++++|.+.+.. +..+.+.+..+..+.. .++|+.|++++|.+++
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccc
Confidence 444444433322 45555555555443221 1111222222222222 2466667777777666
Q ss_pred CCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccC
Q 003301 430 VIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGG 509 (832)
Q Consensus 430 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 509 (832)
..|..|..+++|++|++++|++++..|..|+.+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|+.
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 66666777777777777777777666677777777777777777777777777888888888888888888777888888
Q ss_pred CCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCCC
Q 003301 510 LVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPRG 554 (832)
Q Consensus 510 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 554 (832)
+++|++|+|++|++++..+..+..+++|+.|++++|+++|.+|..
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 888888888888888776677788888888888888888888864
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6e-43 Score=394.77 Aligned_cols=382 Identities=20% Similarity=0.215 Sum_probs=207.1
Q ss_pred ccccccccccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccC-CCCCcCCCcCceEEeccc
Q 003301 75 MDFSNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERI-PRGLGNLTSLKTLYLGFN 153 (832)
Q Consensus 75 L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~-p~~~~~l~~L~~L~Ls~N 153 (832)
++.++++++ .+|. + .++|++|+|++|++++..|..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|
T Consensus 15 ~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 15 AICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 444444444 4444 1 144555555555555544555555555555555555554222 344555555555555555
Q ss_pred ccccccCccccCccccceecccccccccccCcc--cccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCcccc
Q 003301 154 NLTGEIPYEMGNLRNLEILGLQLNKLVGFVPTS--IFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSG 231 (832)
Q Consensus 154 ~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~ 231 (832)
++++..|..|+++++|++|++++|++++..+.. |.++++|++|+|++|.+.+..|..+ +..+++|++|++++|++++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-FLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-GGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-cCCCCcccEEeCCCCcccc
Confidence 555555555555555555555555555433322 5555666666666666554444432 3455666666666666665
Q ss_pred ccCCcccCC--CCccEEEcCCCcCcccCCcccc--------CccccceeecccccCCCCCCcccccccccc---CCCCcE
Q 003301 232 IIPSFIFNA--SKLSVLELGENSFSGFIPNTLG--------NLRKLEWLRLSYNFLTSSTSELSFLSSWAN---CKNLKL 298 (832)
Q Consensus 232 ~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~---l~~L~~ 298 (832)
..+..+..+ .+|+.|++++|.+.+..+..+. .+++|++|++++|.++. ..+..+.. .++|+.
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-----SMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-----HHHHHHHHHTTTCCEEE
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-----cchhhhhccccccceee
Confidence 555555544 5666666666666655443322 33455555555555543 12222222 245555
Q ss_pred EeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCc
Q 003301 299 LDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNK 378 (832)
Q Consensus 299 L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 378 (832)
|++++|.+.+... ..+.+.+..+..+..+ ..++|++|++++|+
T Consensus 244 L~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 244 LILSNSYNMGSSF---------------GHTNFKDPDNFTFKGL----------------------EASGVKTCDLSKSK 286 (455)
T ss_dssp EECTTCTTTSCCT---------------TCCSSCCCCTTTTGGG----------------------TTSCCCEEECCSSC
T ss_pred Eeecccccccccc---------------chhhhccCcccccccc----------------------cccCceEEEecCcc
Confidence 5555555432110 0011111111111111 12345555555555
Q ss_pred cCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccc
Q 003301 379 LEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPED 458 (832)
Q Consensus 379 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 458 (832)
+++..|..+..+++|++|++++|++++..|..|.++++|+.|+|++|.+++..|..|.++++|++|+|++|++++..|..
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 55555555555555555555555555555555556666666666666666555666666666666666666666666666
Q ss_pred cccccccceecccCcccCCccCCccccccccceeecccccccccCC
Q 003301 459 IGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIP 504 (832)
Q Consensus 459 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 504 (832)
|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6677777777777777776556666777777777777777776555
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-42 Score=388.20 Aligned_cols=408 Identities=25% Similarity=0.306 Sum_probs=250.2
Q ss_pred CccCCCCcceeccCccccCccccCeEeccCCccccCCCccccccccC-------------cEEEccCCcCCCCCCCcccC
Q 003301 1 MLSLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLAEL-------------ELVSLTNNFLSGTIPSTIFN 67 (832)
Q Consensus 1 ~ldl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L-------------~~L~l~~n~l~~~~p~~l~~ 67 (832)
+|++++|.+ |.+|++++++++|++|++++|+++|.+|+.++.+++| ++|++++|+++ .+|..
T Consensus 15 ~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~~--- 89 (454)
T 1jl5_A 15 EPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL--- 89 (454)
T ss_dssp --------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCSC---
T ss_pred hhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCCC---
Confidence 478999999 7999999999999999999999999999999999876 88999999988 56652
Q ss_pred cccccccccccccccccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCce
Q 003301 68 LSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKT 147 (832)
Q Consensus 68 l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~ 147 (832)
.+++ ++||+++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +| .|+++++|++
T Consensus 90 ~~~L-~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 90 PPHL-ESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp CTTC-SEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred cCCC-CEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence 2455 888999999884 7753 4788899999998884 4432 2688899999998885 66 5888899999
Q ss_pred EEecccccccccCccccCccccceecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCC
Q 003301 148 LYLGFNNLTGEIPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGN 227 (832)
Q Consensus 148 L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n 227 (832)
|++++|++++ +|..+ ++|++|++++|++++ +| .+.++++|++|++++|.+++ +|.. .++|++|++++|
T Consensus 158 L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-----~~~L~~L~l~~n 225 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-----PLSLESIVAGNN 225 (454)
T ss_dssp EECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-----CTTCCEEECCSS
T ss_pred EECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-----cCcccEEECcCC
Confidence 9999998884 66544 478888899888887 45 58888888888988888874 5542 258888888888
Q ss_pred ccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCC
Q 003301 228 NFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPIN 307 (832)
Q Consensus 228 ~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 307 (832)
+++. +|. +..+++|++|++++|+++++ |.. +++|++|++++|++++++.. .++|++|++++|+++
T Consensus 226 ~l~~-lp~-~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~N~l~~l~~~---------~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 226 ILEE-LPE-LQNLPFLTTIYADNNLLKTL-PDL---PPSLEALNVRDNYLTDLPEL---------PQSLTFLDVSENIFS 290 (454)
T ss_dssp CCSS-CCC-CTTCTTCCEEECCSSCCSSC-CSC---CTTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCS
T ss_pred cCCc-ccc-cCCCCCCCEEECCCCcCCcc-ccc---ccccCEEECCCCcccccCcc---------cCcCCEEECcCCccC
Confidence 8884 443 77888888888888888863 332 37888888888888775432 267888888888887
Q ss_pred CCCCCcccccccccceEEeecCcccccccccccCc-CcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchh
Q 003301 308 GVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNL-INLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNG 386 (832)
Q Consensus 308 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 386 (832)
+. | ..+.+|++|++++|++++. + .+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|.
T Consensus 291 ~l-~----~~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~- 354 (454)
T 1jl5_A 291 GL-S----ELPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE- 354 (454)
T ss_dssp EE-S----CCCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-
T ss_pred cc-c----CcCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-
Confidence 52 1 1123778888888887752 2 22 477888888888775 4433 467788888888877 3555
Q ss_pred hcCCCCCcEEEecCCcCCC--CCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccC--CCccccccc
Q 003301 387 LCQLARLSVLYMDGNKLSG--PIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNG--SLPEDIGNL 462 (832)
Q Consensus 387 ~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l 462 (832)
.+++|++|++++|++++ .+|.++.. ++.|.+.+.+|.. +++|++|++++|++++ .+|.
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~----- 416 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE----- 416 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchh-----
Confidence 35778888888888876 55555432 2345555555542 4789999999999987 4554
Q ss_pred cccceecccCcccCCccCCcccccc
Q 003301 463 KVVVIIDLSRNNLSGDIPTAIGGLM 487 (832)
Q Consensus 463 ~~L~~L~Ls~N~l~~~~~~~~~~l~ 487 (832)
.++.|.+++|.+.+..+.+.....
T Consensus 417 -sl~~L~~~~~~~~~~~~~~~~~~~ 440 (454)
T 1jl5_A 417 -SVEDLRMNSERVVDPYEFAHETTD 440 (454)
T ss_dssp -------------------------
T ss_pred -hHhheeCcCcccCCccccCHHHhh
Confidence 355667889998877766655443
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.3e-40 Score=369.54 Aligned_cols=362 Identities=19% Similarity=0.208 Sum_probs=210.3
Q ss_pred CCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEEEccCCcccccCCCCc
Q 003301 36 EIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNI 115 (832)
Q Consensus 36 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l 115 (832)
..+..++.+++|++|++++|.+++ +| .++.+++| ++|++++|+++ .+| +..+++|++|++++|++++. | +
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L-~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGL-TKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTC-SEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCC-CEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee-e--c
Confidence 344455555555555555555552 33 35555555 55555555555 233 23556666666666666642 2 5
Q ss_pred cCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceecccccccccccCcccccCCcccE
Q 003301 116 WQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKT 195 (832)
Q Consensus 116 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 195 (832)
+.+++|++|++++|++++ +| ++.+++|++|++++|++++. + ++++++|++|++++|+..+.+ .+..+++|++
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 566666666666666654 23 56666666666666666642 2 556666666666666433333 3556666666
Q ss_pred EEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccc
Q 003301 196 LALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYN 275 (832)
Q Consensus 196 L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 275 (832)
|++++|.+++ +| +..+++|++|++++|+++++ .+..+++|++|++++|+++++ | +..+++|++|++++|
T Consensus 175 L~ls~n~l~~-l~----l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 175 LDCSFNKITE-LD----VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp EECCSSCCCC-CC----CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSS
T ss_pred EECCCCccce-ec----cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCC
Confidence 6666666653 22 34566666666666666654 255666777777777777653 3 566677777777777
Q ss_pred cCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcc
Q 003301 276 FLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNEL 355 (832)
Q Consensus 276 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 355 (832)
++++++ +..+++|+.|++++|. |+.+++++|.+.+.+| ++.+++|+.|++++|..
T Consensus 244 ~l~~~~--------~~~l~~L~~L~l~~n~---------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 244 PLTELD--------VSTLSKLTTLHCIQTD---------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp CCSCCC--------CTTCTTCCEEECTTCC---------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred cCCCcC--------HHHCCCCCEEeccCCC---------------CCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence 776532 2445667777766553 3345566666555554 45566677777777766
Q ss_pred cccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCccc
Q 003301 356 IGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTF 435 (832)
Q Consensus 356 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 435 (832)
.+.+|. ...+|+.|++++| ++|++|++++|++++. + ++++++|+.|++++|++++
T Consensus 299 l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~------ 353 (457)
T 3bz5_A 299 LYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD------ 353 (457)
T ss_dssp CCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB------
T ss_pred cceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC------
Confidence 555553 3344555555544 4566677777776653 2 6666666666666666654
Q ss_pred ccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCcc
Q 003301 436 WNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAI 483 (832)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 483 (832)
++.|..|++++|++.|. +.+..|..+++++|+++|.+|..+
T Consensus 354 --l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 --FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp --CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred --ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 23455556666666543 234455555666666666555543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.6e-40 Score=367.10 Aligned_cols=359 Identities=19% Similarity=0.175 Sum_probs=239.2
Q ss_pred CChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccccC
Q 003301 86 LPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGN 165 (832)
Q Consensus 86 lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~ 165 (832)
.+..+. .+++|++|++++|++++ +| .+..+++|++|+|++|++++. | ++.+++|++|++++|++++. | +++
T Consensus 34 ~~~~~~-~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 34 DTISEE-QLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp SEEEHH-HHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred cccChh-HcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 333443 67888888888888885 35 577888888888888888753 3 77788888888888888753 3 777
Q ss_pred ccccceecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccE
Q 003301 166 LRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSV 245 (832)
Q Consensus 166 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 245 (832)
+++|++|++++|+++++ + +.++++|++|++++|.+++ + ++..+++|++|++++|+..+.. .+..+++|++
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l----~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I----DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C----CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e----ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 78888888888887763 3 6777777777777777764 2 2456677777777777433333 3556666666
Q ss_pred EEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEE
Q 003301 246 LELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIF 325 (832)
Q Consensus 246 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 325 (832)
|++++|+++++ | +..+++|++|++++|.++.+ .+..+++|++|++++|++++
T Consensus 175 L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~--------~l~~l~~L~~L~Ls~N~l~~----------------- 226 (457)
T 3bz5_A 175 LDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL--------DLNQNIQLTFLDCSSNKLTE----------------- 226 (457)
T ss_dssp EECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSC-----------------
T ss_pred EECCCCcccee-c--cccCCCCCEEECcCCcCCee--------ccccCCCCCEEECcCCcccc-----------------
Confidence 66666666653 2 55666666666666666552 13455555555555555543
Q ss_pred eecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCC
Q 003301 326 ISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSG 405 (832)
Q Consensus 326 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 405 (832)
+| +..+++|+.|++++|++++.. +..+++|+.|++++|+ |+.|++++|.+.+
T Consensus 227 ---------ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 227 ---------ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLI 278 (457)
T ss_dssp ---------CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCC
T ss_pred ---------cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCC
Confidence 22 445566666666666666543 3345556666665543 3445666666665
Q ss_pred CCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCcccc
Q 003301 406 PIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGG 485 (832)
Q Consensus 406 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 485 (832)
.+| ++.+++|+.|++++|...+.+|. ...+|+.|++++| ++|+.|++++|++++. + +++
T Consensus 279 ~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~ 337 (457)
T 3bz5_A 279 YFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSH 337 (457)
T ss_dssp EEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTT
T ss_pred ccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--ccc
Confidence 555 45667777777777776665553 2344555555544 5677888888888863 2 778
Q ss_pred ccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCC
Q 003301 486 LMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 486 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
+++|+.|++++|+|++ ++.|+.|++++|.++|. ..+..|+.+++++|+++|.+|.
T Consensus 338 l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 338 NTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 8888888888888875 24677778888888876 3566778888888888888886
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-40 Score=373.29 Aligned_cols=348 Identities=22% Similarity=0.217 Sum_probs=244.2
Q ss_pred cEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecc
Q 003301 194 KTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLS 273 (832)
Q Consensus 194 ~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 273 (832)
+.++.+++.++ .+|..+ .+++++|+|++|+++++.+..|.++++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 45666666665 556544 2567778888888877777778888888888888888887777778888888888888
Q ss_pred cccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecC
Q 003301 274 YNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGN 353 (832)
Q Consensus 274 ~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 353 (832)
+|.++.++.. .|..+++|++|+|++|++.+. .|..|..+++|++|++++|
T Consensus 89 ~n~l~~~~~~-----~~~~l~~L~~L~Ls~n~i~~~-------------------------~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 89 SNRLKLIPLG-----VFTGLSNLTKLDISENKIVIL-------------------------LDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp SSCCCSCCTT-----SSTTCTTCCEEECTTSCCCEE-------------------------CTTTTTTCTTCCEEEECCT
T ss_pred CCcCCccCcc-----cccCCCCCCEEECCCCccccC-------------------------ChhHccccccCCEEECCCC
Confidence 8877765443 256677777777777766543 4445556666677777777
Q ss_pred cccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCc
Q 003301 354 ELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPS 433 (832)
Q Consensus 354 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 433 (832)
.+.+..+..|.++++|++|+|++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 66666666677777777777777777665555667777777777777777766666677777777777777766665555
Q ss_pred ccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCC
Q 003301 434 TFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSL 513 (832)
Q Consensus 434 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 513 (832)
.+....+|++|++++|++++..+..+..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..|..+++|
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 55555577777777777776555667777777777777777777777777777788888888888877777777788888
Q ss_pred CeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCCCCCCCCcCCCcccCCCCCCCCcc
Q 003301 514 ESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPRGGPFANFSNRSFMGNDLLCGLAQ 576 (832)
Q Consensus 514 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~ 576 (832)
+.|+|++|++++..+..|..+++|+.|+|++|+|.|.++....+.......+.++...|..|.
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 888888888877766677777788888888888877765421112222344566666676543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.1e-39 Score=364.78 Aligned_cols=358 Identities=27% Similarity=0.399 Sum_probs=194.0
Q ss_pred cccccccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEeccccccc
Q 003301 78 SNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTG 157 (832)
Q Consensus 78 s~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~ 157 (832)
..+.+.+.++.. .+++++.|++++|.++ .+| .+..+++|++|+|++|.+++..| +.++++|++|++++|++++
T Consensus 32 ~~~~~~~~i~~~---~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 104 (466)
T 1o6v_A 32 GKTNVTDTVSQT---DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104 (466)
T ss_dssp TCSSTTSEECHH---HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred cccccccccChh---HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc
Confidence 334444444432 3456777788877777 344 36777777777777777775433 7777777777777777774
Q ss_pred ccCccccCccccceecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcc
Q 003301 158 EIPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFI 237 (832)
Q Consensus 158 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 237 (832)
..+ ++++++|++|++++|++++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+..+ +
T Consensus 105 ~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~---~~~~l~~L~~L~l~-~~~~~~~~--~ 173 (466)
T 1o6v_A 105 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS---ALSGLTSLQQLSFG-NQVTDLKP--L 173 (466)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG---GGTTCTTCSEEEEE-ESCCCCGG--G
T ss_pred Chh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch---hhccCCcccEeecC-CcccCchh--h
Confidence 433 7777777777777777765432 6666677777776666653 22 13455555555554 33332222 4
Q ss_pred cCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCccccc
Q 003301 238 FNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNL 317 (832)
Q Consensus 238 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 317 (832)
..+++|++|++++|.+++. ..+..+++|++|++++|.++..+. +..+++|+.|++++|++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l----------- 233 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-------LGILTNLDELSLNGNQL----------- 233 (466)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCC-----------
T ss_pred ccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-------ccccCCCCEEECCCCCc-----------
Confidence 4455555555555554432 123444444444444444433111 23334444444444433
Q ss_pred ccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEE
Q 003301 318 SLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLY 397 (832)
Q Consensus 318 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 397 (832)
++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|+
T Consensus 234 --------------~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 234 --------------KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp --------------CCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred --------------ccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 321 234455556666666665554433 5555556666666665554322 55555555555
Q ss_pred ecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCC
Q 003301 398 MDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSG 477 (832)
Q Consensus 398 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 477 (832)
+++|++++..+ +..+++|+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 55555554322 4555555555555555555443 44555555555555555542 244555555555555555554
Q ss_pred ccCCccccccccceeecccccccc
Q 003301 478 DIPTAIGGLMNLQDLSLRDNGLQG 501 (832)
Q Consensus 478 ~~~~~~~~l~~L~~L~Ls~N~l~~ 501 (832)
..| +..+++|+.|++++|++++
T Consensus 368 ~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CGG--GTTCTTCCEEECCCEEEEC
T ss_pred cch--hhcCCCCCEEeccCCcccC
Confidence 443 4555555555555555553
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.6e-39 Score=361.11 Aligned_cols=347 Identities=29% Similarity=0.420 Sum_probs=190.2
Q ss_pred cccccCcEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCc
Q 003301 42 GNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKEL 121 (832)
Q Consensus 42 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L 121 (832)
..+.+++.|++++|.+. .+|. +..+++| ++||+++|.++ .+|. +..+++|++|++++|++++..+ +..+++|
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~~l~~L-~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 114 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VEYLNNL-TQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 114 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GGGCTTC-CEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hHhccccEEecCCCCCc-cCcc-hhhhcCC-CEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCC
Confidence 34566777777777666 4553 5556665 66666666666 3443 3356666666666666663332 5566666
Q ss_pred cEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceecccccccccccCcccccCCcccEEEecCC
Q 003301 122 IVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSN 201 (832)
Q Consensus 122 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n 201 (832)
++|++++|++++..+ +..+++|++|++++|.+++ ++ .++++++|++|+++ |.+.+.. .+.++++|++|++++|
T Consensus 115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 666666666654322 5556666666666666553 22 35555556666554 3333321 2555555555555555
Q ss_pred CCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCC
Q 003301 202 ALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSST 281 (832)
Q Consensus 202 ~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 281 (832)
.+. ++. .+..+++|++|++++|.+++..| +..+++|++|++++|.++.+
T Consensus 188 ~l~--------------------------~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 188 KVS--------------------------DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp CCC--------------------------CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred cCC--------------------------CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-
Confidence 554 321 23444555555555555544333 44455555555555555442
Q ss_pred CccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccc
Q 003301 282 SELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPI 361 (832)
Q Consensus 282 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 361 (832)
+.+..+++|+.|++++|.+.+..+ +..+. +|++|++++|.+++..+ +..+++|++|++++|++.+..+
T Consensus 237 ------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 304 (466)
T 1o6v_A 237 ------GTLASLTNLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP- 304 (466)
T ss_dssp ------GGGGGCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-
T ss_pred ------hhhhcCCCCCEEECCCCccccchh--hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-
Confidence 124455555555555555543322 22222 44444444444443322 5556666666666666665433
Q ss_pred cccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCccc
Q 003301 362 TFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDI 441 (832)
Q Consensus 362 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 441 (832)
+..+++|+.|+|++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|
T Consensus 305 -~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred -hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 5566666666666666665443 55566666666666666643 346666666666666666666555 5666666
Q ss_pred ceeeecCCcccC
Q 003301 442 LSLNFSSNFLNG 453 (832)
Q Consensus 442 ~~L~Ls~N~l~~ 453 (832)
+.|++++|.+++
T Consensus 378 ~~L~l~~n~~~~ 389 (466)
T 1o6v_A 378 TQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCCEEEEC
T ss_pred CEEeccCCcccC
Confidence 666666666664
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=353.16 Aligned_cols=320 Identities=22% Similarity=0.235 Sum_probs=169.8
Q ss_pred eEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceeccccc
Q 003301 98 KGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLN 177 (832)
Q Consensus 98 ~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N 177 (832)
+.++.++++++ .+|..+. +++++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666666666 4555442 45666666666666555556666666666666666666555555666666666666666
Q ss_pred ccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccC
Q 003301 178 KLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFI 257 (832)
Q Consensus 178 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 257 (832)
+++++.+..|.++++|++|+|++|.+. ++.+..|..+++|++|++++|.+++..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~--------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 144 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIV--------------------------ILLDYMFQDLYNLKSLEVGDNDLVYIS 144 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCC--------------------------EECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred cCCccCcccccCCCCCCEEECCCCccc--------------------------cCChhHccccccCCEEECCCCccceeC
Confidence 555544444555555555555555544 444444455555555555555555555
Q ss_pred CccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccc
Q 003301 258 PNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPK 337 (832)
Q Consensus 258 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 337 (832)
+..|.++++|++|++++|.++.++.. .|..+++|+.|++++|.+.+. .+.
T Consensus 145 ~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~l~~L~~L~l~~n~i~~~-------------------------~~~ 194 (477)
T 2id5_A 145 HRAFSGLNSLEQLTLEKCNLTSIPTE-----ALSHLHGLIVLRLRHLNINAI-------------------------RDY 194 (477)
T ss_dssp TTSSTTCTTCCEEEEESCCCSSCCHH-----HHTTCTTCCEEEEESCCCCEE-------------------------CTT
T ss_pred hhhccCCCCCCEEECCCCcCcccChh-----HhcccCCCcEEeCCCCcCcEe-------------------------Chh
Confidence 55555555555555555555443221 244445555555554444322 222
Q ss_pred cccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCC
Q 003301 338 EIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSL 417 (832)
Q Consensus 338 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 417 (832)
.|..+++|++|++++|...+.++.......+|++|+|++|++++..+..+..+++|++|+|++|++++..+..|..+++|
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC
Confidence 33444444444444444444444333333455555555555553333445555555555555555554444555555555
Q ss_pred CeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccC
Q 003301 418 RLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLS 476 (832)
Q Consensus 418 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 476 (832)
+.|+|++|+++++.|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 55555555555555555555555555555555555544455555555666666666554
No 35
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=5.4e-38 Score=332.20 Aligned_cols=168 Identities=29% Similarity=0.374 Sum_probs=152.4
Q ss_pred cCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEecC
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEYM 737 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 737 (832)
+.|++.++||+|+||+||+|++. +|+.||||++........+.+.+|++++++++|||||+++++|.+++.+|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 56999999999999999999986 49999999998766666678899999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccccc
Q 003301 738 PNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMKQ 817 (832)
Q Consensus 738 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~~ 817 (832)
+||+|.+++.+. .+++..+..++.||+.||+||| ++|||||||||+|||++.+|.+||+|||+|+.+...... .
T Consensus 154 ~gg~L~~~l~~~--~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~-~ 227 (346)
T 4fih_A 154 EGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR-R 227 (346)
T ss_dssp TTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC-B
T ss_pred CCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCc-c
Confidence 999999999864 5899999999999999999999 999999999999999999999999999999987544332 3
Q ss_pred ccccccccccCCCCC
Q 003301 818 TLTLATIGYMAPGLF 832 (832)
Q Consensus 818 ~~~~gt~~y~APE~l 832 (832)
...+||+.|||||++
T Consensus 228 ~~~~GTp~YmAPEvl 242 (346)
T 4fih_A 228 KSLVGTPYWMAPELI 242 (346)
T ss_dssp CCCCSCGGGCCHHHH
T ss_pred cccccCcCcCCHHHH
Confidence 346899999999974
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-37 Score=339.48 Aligned_cols=335 Identities=21% Similarity=0.237 Sum_probs=221.0
Q ss_pred CCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccce
Q 003301 190 LSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEW 269 (832)
Q Consensus 190 l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 269 (832)
+++++.|++++|.+. .+|..+ +..+++|++|+|++|.++++.+..|..+++|++|+|++|.+++..|..|.++++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAAL-LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHH-HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhH-hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 455666666666655 334322 345556666666666665555555555666666666666665555555555555555
Q ss_pred eecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEE
Q 003301 270 LRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELG 349 (832)
Q Consensus 270 L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 349 (832)
|++++|.++.++... |..+++|++|++++|++. +..|..|..+++|++|+
T Consensus 122 L~L~~n~l~~l~~~~-----~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 122 LVLERNDLSSLPRGI-----FHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp EECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCC-------------------------BCCTTTTSSCTTCCEEE
T ss_pred EECCCCccCcCCHHH-----hcCCCCCcEEECCCCccC-------------------------ccChhhccCCCCCCEEE
Confidence 555555555433321 344555555555555554 44455566666677777
Q ss_pred eecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCC
Q 003301 350 LWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNS 429 (832)
Q Consensus 350 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 429 (832)
+++|++++. .+..+++|+.|++++|.+++ +...++|++|++++|.+... |.. ..++|+.|++++|.+++
T Consensus 172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTD 240 (390)
T ss_dssp CCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCC
T ss_pred CCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcc
Confidence 777766643 24455667777777776663 23335677777777777643 332 23677788888887776
Q ss_pred CCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccC
Q 003301 430 VIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGG 509 (832)
Q Consensus 430 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 509 (832)
. ..+..+++|++|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..++.
T Consensus 241 ~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 316 (390)
T 3o6n_A 241 T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316 (390)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred c--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccc
Confidence 4 467777888888888888887777788888888888888888874 5666777888888888888888 56777888
Q ss_pred CCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCCCCCCCCcCCCcccCCCCCCCCc
Q 003301 510 LVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPRGGPFANFSNRSFMGNDLLCGLA 575 (832)
Q Consensus 510 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 575 (832)
+++|+.|+|++|++++. | +..+++|+.|++++|+++|.+.. ..+..+....+.+++..|..+
T Consensus 317 l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred cCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 88888888888888854 3 56678889999999999886543 233445555677787778754
No 37
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=5.3e-38 Score=327.13 Aligned_cols=170 Identities=31% Similarity=0.490 Sum_probs=152.0
Q ss_pred cCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
++|++.+.||+|+||+||+|++. +++.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 57999999999999999999986 48999999997542 344578999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
|||+||+|.+++++.+ .+++..+..++.||+.||+||| ++||+||||||+|||++.++.+||+|||+|+.+.....
T Consensus 112 Ey~~gG~L~~~i~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~ 187 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187 (311)
T ss_dssp CCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred ecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence 9999999999998754 6999999999999999999999 99999999999999999999999999999998754332
Q ss_pred -cccccccccccccCCCCC
Q 003301 815 -MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 815 -~~~~~~~gt~~y~APE~l 832 (832)
......+||+.|||||++
T Consensus 188 ~~~~~~~~GTp~YmAPEvl 206 (311)
T 4aw0_A 188 QARANSFVGTAQYVSPELL 206 (311)
T ss_dssp CCCBCCCCSCGGGCCHHHH
T ss_pred cccccCcccCcccCCHHHH
Confidence 233446899999999974
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8e-37 Score=355.57 Aligned_cols=336 Identities=21% Similarity=0.229 Sum_probs=226.6
Q ss_pred CCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccce
Q 003301 190 LSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEW 269 (832)
Q Consensus 190 l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 269 (832)
+++++.+++++|.+. .+|..+ +..+++|++|+|++|.++++.+..|..+++|++|+|++|.+++..|..|+++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAAL-LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHH-HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHH-HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 345555555555554 233222 234555555555555555555555555555555555555555555555555555555
Q ss_pred eecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEE
Q 003301 270 LRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELG 349 (832)
Q Consensus 270 L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 349 (832)
|+|++|.++.++... |..+++ |++|++++|.+++..|..|..+++|++|+
T Consensus 128 L~L~~n~l~~l~~~~-----~~~l~~-------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 128 LVLERNDLSSLPRGI-----FHNTPK-------------------------LTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp EECCSSCCCCCCTTT-----TTTCTT-------------------------CCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred EEeeCCCCCCCCHHH-----hccCCC-------------------------CCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 555555554433221 344444 55555555555555556666677777777
Q ss_pred eecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCC
Q 003301 350 LWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNS 429 (832)
Q Consensus 350 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 429 (832)
+++|.+++.. +..+++|+.|++++|.+++ +....+|+.|++++|.+... +..+ .++|+.|+|++|.+++
T Consensus 178 L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 178 LSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD 246 (597)
T ss_dssp CTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC
T ss_pred CcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC
Confidence 7777776542 4456677777777777763 23445677888888877643 3222 2578888888888876
Q ss_pred CCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccC
Q 003301 430 VIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGG 509 (832)
Q Consensus 430 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 509 (832)
+..+..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..++.
T Consensus 247 --~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 322 (597)
T 3oja_B 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 322 (597)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred --ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCccccc
Confidence 3667888888888888888888888888888889999999998885 5777788899999999999998 67888888
Q ss_pred CCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCCCCCCCCcCCCcccCCCCCCCCcc
Q 003301 510 LVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPRGGPFANFSNRSFMGNDLLCGLAQ 576 (832)
Q Consensus 510 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~ 576 (832)
+++|+.|+|++|++++.. +..++.|+.|++++|+|+|.++. ..+..+....+.+++..|+.+.
T Consensus 323 l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~ 385 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDY 385 (597)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTTC
T ss_pred CCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcch
Confidence 999999999999998653 56678999999999999987654 3455666667888999998643
No 39
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1e-37 Score=330.61 Aligned_cols=171 Identities=27% Similarity=0.411 Sum_probs=145.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.++|++.+.||+|+||+||+|++. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 368999999999999999999986 48999999997553 344578999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 735 EYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+||+|.+++...+ ..+++..+..|+.||+.||+||| ++|||||||||+|||++.+|.+||+|||+|+......
T Consensus 103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred eCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCCc
Confidence 9999999999997543 35799999999999999999999 9999999999999999999999999999998764322
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
. .....+||+.|||||++
T Consensus 180 ~-~~~~~~GT~~YmAPE~l 197 (350)
T 4b9d_A 180 E-LARACIGTPYYLSPEIC 197 (350)
T ss_dssp H-HHHHHHSCCTTCCHHHH
T ss_pred c-cccccCCCccccCHHHH
Confidence 2 22346799999999974
No 40
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=333.01 Aligned_cols=169 Identities=28% Similarity=0.371 Sum_probs=152.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.+.|++.++||+|+||+||+|++. +|+.||||++........+.+.+|++++++++|||||+++++|.+++.+|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 357999999999999999999986 4899999999876666667889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcccc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMK 816 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~ 816 (832)
|+||+|.++++.. .+++..+..++.||+.||+||| ++|||||||||+|||++.+|.+||+|||+|+.+......
T Consensus 230 ~~gG~L~~~i~~~--~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~- 303 (423)
T 4fie_A 230 LEGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR- 303 (423)
T ss_dssp CTTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCC-
T ss_pred CCCCcHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCcc-
Confidence 9999999999765 4899999999999999999999 999999999999999999999999999999987554332
Q ss_pred cccccccccccCCCCC
Q 003301 817 QTLTLATIGYMAPGLF 832 (832)
Q Consensus 817 ~~~~~gt~~y~APE~l 832 (832)
....+||+.|||||++
T Consensus 304 ~~~~~GTp~YmAPEvl 319 (423)
T 4fie_A 304 RKSLVGTPYWMAPELI 319 (423)
T ss_dssp BCCCEECTTTCCHHHH
T ss_pred ccccccCcCcCCHHHH
Confidence 3346899999999974
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.9e-36 Score=329.04 Aligned_cols=336 Identities=19% Similarity=0.190 Sum_probs=260.5
Q ss_pred CccccceecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCcc
Q 003301 165 NLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLS 244 (832)
Q Consensus 165 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 244 (832)
.++++++|++++|.++.+.+..|.++++|++|++++|.+.+..+.. +..+++|++|+|++|+++++.|..|.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh--ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4688999999999999877677899999999999999998655544 47899999999999999999999999999999
Q ss_pred EEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceE
Q 003301 245 VLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRI 324 (832)
Q Consensus 245 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 324 (832)
+|++++|.++.+.+..|..+++|++|++++|.++.++. ..|..+++|++|++++|++++..
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~-------------- 181 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-----DTFQATTSLQNLQLSSNRLTHVD-------------- 181 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-----TTTSSCTTCCEEECCSSCCSBCC--------------
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-----hhccCCCCCCEEECCCCcCCccc--------------
Confidence 99999999998777778999999999999999987543 34788999999999999987431
Q ss_pred EeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCC
Q 003301 325 FISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLS 404 (832)
Q Consensus 325 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 404 (832)
+..+++|+.|++++|.+.+. ...++|++|++++|+++.. |.. ..++|+.|++++|.++
T Consensus 182 --------------~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 182 --------------LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLT 239 (390)
T ss_dssp --------------GGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCC
T ss_pred --------------cccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCc
Confidence 22334555566666655432 2234566777777766632 332 2356777777777776
Q ss_pred CCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccc
Q 003301 405 GPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIG 484 (832)
Q Consensus 405 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 484 (832)
+. ..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+.
T Consensus 240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 315 (390)
T 3o6n_A 240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315 (390)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence 43 467777888888888888887777888888888888888888875 5666778889999999999998 5677788
Q ss_pred cccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCC
Q 003301 485 GLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 485 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
.+++|+.|+|++|++++. | +..+++|+.|++++|++++..... -+..+....+..+...|..|
T Consensus 316 ~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~--~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA--LFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH--HTTTCCTTTBCCCCSCCCTT
T ss_pred ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHH--HHHHHHhhcccccCceeccc
Confidence 899999999999999854 3 778899999999999998743332 23444444555555555443
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-36 Score=324.71 Aligned_cols=256 Identities=34% Similarity=0.562 Sum_probs=220.3
Q ss_pred ccceEEeecCcccc--cccccccCcCcccEEEeec-CcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEE
Q 003301 320 SLSRIFISNCSIRG--TIPKEIGNLINLRELGLWG-NELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVL 396 (832)
Q Consensus 320 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 396 (832)
+++.|++++|.+++ .+|..|.++++|++|++++ |.+.+.+|..|..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 57777777777777 7777888888888888884 88888888888888888888888888887888888888888888
Q ss_pred EecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCc-ccceeeecCCcccCCCccccccccccceecccCccc
Q 003301 397 YMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLK-DILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNL 475 (832)
Q Consensus 397 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 475 (832)
++++|++++.+|..|..+++|++|++++|++++..|..|..++ +|++|++++|++++..|..+..++ |+.|+|++|++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 8888888888888888888888888888888878888888887 888888888888888888888887 99999999999
Q ss_pred CCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCCCC
Q 003301 476 SGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPRGG 555 (832)
Q Consensus 476 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~ 555 (832)
++..|..|.++++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|+|++|+++|.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 888888899999999999999999876665 8888999999999999999999999999999999999999999999887
Q ss_pred CCCCcCCCcccCCCCCCCCccc
Q 003301 556 PFANFSNRSFMGNDLLCGLAQV 577 (832)
Q Consensus 556 ~~~~~~~~~~~~n~~~c~~~~~ 577 (832)
.+..+....+.||+++||.|..
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTSS
T ss_pred cccccChHHhcCCCCccCCCCC
Confidence 7888888889999999997654
No 43
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=3.4e-37 Score=322.39 Aligned_cols=171 Identities=26% Similarity=0.484 Sum_probs=148.9
Q ss_pred cCCCCCCeeeccCCceEEEEEec------CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL------DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
++|.+.+.||+|+||+||+|++. ++..||||+++.......+.|.+|++++++++|||||+++|+|.+++..|+
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 57888999999999999999874 377899999987766667889999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCC------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEE
Q 003301 733 VLEYMPNGSLEDYLYSNN------------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHL 800 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl 800 (832)
|||||++|+|.++++..+ ..+++.++..|+.|++.||+||| +++||||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEEE
Confidence 999999999999997532 35899999999999999999999 999999999999999999999999
Q ss_pred eccccccccCCCcccc-cccccccccccCCCCC
Q 003301 801 SDFGIAKLLSGEESMK-QTLTLATIGYMAPGLF 832 (832)
Q Consensus 801 ~DFg~a~~~~~~~~~~-~~~~~gt~~y~APE~l 832 (832)
+|||+|+......... .....||++|||||++
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~ 202 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI 202 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHH
T ss_pred CCcccceecCCCCceeecCceecChhhcCHHHH
Confidence 9999998765443322 2235699999999963
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.5e-35 Score=319.81 Aligned_cols=308 Identities=24% Similarity=0.370 Sum_probs=213.5
Q ss_pred ccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCcc
Q 003301 186 SIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLR 265 (832)
Q Consensus 186 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 265 (832)
.+..+++|++|++++|.+. .+|. +..+++|++|++++|+++++.+ +..+++|++|++++|.+++. +.+..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~---~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG---IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred cchhcccccEEEEeCCccc-cchh---hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCC
Confidence 3557788888888888886 3442 4567788888888888776655 67777888888888877753 3577777
Q ss_pred ccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcc
Q 003301 266 KLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINL 345 (832)
Q Consensus 266 ~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 345 (832)
+|++|++++|.++.++. +..+++|+.|++++|...... ..+..+++|
T Consensus 111 ~L~~L~l~~n~i~~~~~-------~~~l~~L~~L~l~~n~~~~~~--------------------------~~~~~l~~L 157 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP-------LANLTKMYSLNLGANHNLSDL--------------------------SPLSNMTGL 157 (347)
T ss_dssp TCSEEECTTSCCCCCGG-------GTTCTTCCEEECTTCTTCCCC--------------------------GGGTTCTTC
T ss_pred cCCEEECcCCcccCchh-------hccCCceeEEECCCCCCcccc--------------------------cchhhCCCC
Confidence 77777777777765321 566777777777777543221 225566666
Q ss_pred cEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCC
Q 003301 346 RELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASN 425 (832)
Q Consensus 346 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 425 (832)
++|++++|.+.+..+ +..+++|++|++++|++++. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred cEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence 666666666664433 66666777777777776643 22 6666777777777777764433 666777777777777
Q ss_pred cCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCc
Q 003301 426 ELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPK 505 (832)
Q Consensus 426 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 505 (832)
.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..|.
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 7766544 66777777777777777653 4567777778888888877754 4577788888888888888877777
Q ss_pred cccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCccc
Q 003301 506 SIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLE 548 (832)
Q Consensus 506 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 548 (832)
.|+.+++|+.|+|++|++++..| +..+++|++|++++|+++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 78888888888888888887655 777888888888888775
No 45
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.2e-36 Score=312.73 Aligned_cols=168 Identities=24% Similarity=0.466 Sum_probs=135.9
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||+||+|.+. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+|
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv 91 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence 478999999999999999999875 58999999997543 23356789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||| +|+|.+++.+.+ .+++..+..++.|++.||+||| ++||+||||||+|||++.++.+||+|||+|+......
T Consensus 92 mEy~-~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~ 166 (275)
T 3hyh_A 92 IEYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN 166 (275)
T ss_dssp EECC-CEEHHHHHHHSC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC-------
T ss_pred EeCC-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC
Confidence 9999 789999998765 7999999999999999999999 9999999999999999999999999999998764432
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
.....+||+.|||||++
T Consensus 167 --~~~~~~GT~~Y~APE~~ 183 (275)
T 3hyh_A 167 --FLKTSCGSPNYAAPEVI 183 (275)
T ss_dssp ----------CTTSCHHHH
T ss_pred --ccCCeeECcccCChhhh
Confidence 22346799999999974
No 46
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=317.87 Aligned_cols=170 Identities=27% Similarity=0.489 Sum_probs=143.2
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
..+++++.++||+|+||+||+|++. ..||||+++... ....+.|.+|++++++++|||||+++|++.+ +..|+||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred cHHHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence 3467889999999999999999874 369999986433 3445789999999999999999999998865 5689999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
|||++|+|.+++...+..+++.++..|+.|||.||+||| +++||||||||+|||+++++.+||+|||+|+.......
T Consensus 111 Ey~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~ 187 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp ECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred EcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence 999999999999877668999999999999999999999 99999999999999999999999999999987643322
Q ss_pred -cccccccccccccCCCCC
Q 003301 815 -MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 815 -~~~~~~~gt~~y~APE~l 832 (832)
......+||+.|||||++
T Consensus 188 ~~~~~~~~GT~~ymAPE~l 206 (307)
T 3omv_A 188 SQQVEQPTGSVLWMAPEVI 206 (307)
T ss_dssp ------CCCCTTSCCHHHH
T ss_pred ceeecccccCCCccCHHHh
Confidence 223446799999999963
No 47
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=322.14 Aligned_cols=171 Identities=28% Similarity=0.456 Sum_probs=142.7
Q ss_pred cCCCCCCeeeccCCceEEEEEec------CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL------DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
++|.+.++||+|+||+||+|++. +++.||||+++.......+.|.+|++++++++|||||+++|+|.+++..|+
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 56778899999999999999874 378899999987766667889999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCC--------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcE
Q 003301 733 VLEYMPNGSLEDYLYSNN--------------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVA 798 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 798 (832)
|||||++|+|.++++... ..+++.++..|+.|||.||+||| +++||||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcE
Confidence 999999999999997532 34899999999999999999999 9999999999999999999999
Q ss_pred EEeccccccccCCCccc-ccccccccccccCCCCC
Q 003301 799 HLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 799 kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~l 832 (832)
||+|||+|+........ .....+||+.|||||++
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~ 232 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI 232 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHH
T ss_pred EEcccccceeccCCCcceecCcccccccccChhhh
Confidence 99999999876443322 23345799999999963
No 48
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=4.4e-36 Score=311.43 Aligned_cols=164 Identities=27% Similarity=0.424 Sum_probs=142.3
Q ss_pred CCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEec----CCeeEEEE
Q 003301 662 NASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTN----NDFKALVL 734 (832)
Q Consensus 662 ~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 734 (832)
++.++||+|+||+||+|.+.. ++.||+|++.... ....+.+.+|++++++++|||||+++++|.+ ++.+|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 667789999999999999864 8899999997543 3345789999999999999999999999865 34689999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeEeC-CCCcEEEeccccccccCC
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNP--VVHCDIKPSNVLLD-KDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~-~~~~~kl~DFg~a~~~~~ 811 (832)
|||+||+|.+++++.+ .+++..+..|+.||+.||+||| +++ ||||||||+|||++ .++.+||+|||+|+....
T Consensus 109 Ey~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~ 184 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA 184 (290)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred eCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence 9999999999998754 6999999999999999999999 888 99999999999997 479999999999986533
Q ss_pred CcccccccccccccccCCCCC
Q 003301 812 EESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 812 ~~~~~~~~~~gt~~y~APE~l 832 (832)
. .....+||+.|||||++
T Consensus 185 ~---~~~~~~GTp~YmAPE~~ 202 (290)
T 3fpq_A 185 S---FAKAVIGTPEFMAPEMY 202 (290)
T ss_dssp T---SBEESCSSCCCCCGGGG
T ss_pred C---ccCCcccCccccCHHHc
Confidence 2 22346799999999974
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.9e-35 Score=315.08 Aligned_cols=308 Identities=27% Similarity=0.394 Sum_probs=233.4
Q ss_pred cccCccccceecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCC
Q 003301 162 EMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNAS 241 (832)
Q Consensus 162 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 241 (832)
.+..+++|++|++++|.+..+ + .+..+++|++|++++|.+++ +|. +..+++|++|++++|.++.+ ..|..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~---~~~l~~L~~L~L~~n~i~~~--~~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP---LSNLVKLTNLYIGTNKITDI--SALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG---GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh---hhcCCcCCEEEccCCcccCc--hHHcCCC
Confidence 456789999999999999864 3 48999999999999999984 443 57899999999999999975 3589999
Q ss_pred CccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCccccccccc
Q 003301 242 KLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSL 321 (832)
Q Consensus 242 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 321 (832)
+|++|++++|.+++..+ +..+++|++|++++|..... +..+..+++|++|++++|.+.+..+
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~------~~~~~~l~~L~~L~l~~~~~~~~~~---------- 172 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD------LSPLSNMTGLNYLTVTESKVKDVTP---------- 172 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC------CGGGTTCTTCCEEECCSSCCCCCGG----------
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc------ccchhhCCCCcEEEecCCCcCCchh----------
Confidence 99999999999997644 88999999999999965542 2337888999999999998764321
Q ss_pred ceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCC
Q 003301 322 SRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGN 401 (832)
Q Consensus 322 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 401 (832)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 173 -----------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 173 -----------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp -----------------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred -----------------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence 4455566666666666654333 6666667777777776664333 666667777777777
Q ss_pred cCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCC
Q 003301 402 KLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPT 481 (832)
Q Consensus 402 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 481 (832)
++++..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|++++. +.+..+++|+.|++++|++++..|.
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 7764333 66777777777777777664 3566777777777777777753 3577788888888888888877778
Q ss_pred ccccccccceeecccccccccCCccccCCCCCCeeccCCCccc
Q 003301 482 AIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLS 524 (832)
Q Consensus 482 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 524 (832)
.|+++++|+.|++++|++++..| ++.+++|+.||+++|+++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888888888888886655 778888888888888875
No 50
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.3e-36 Score=320.82 Aligned_cols=166 Identities=24% Similarity=0.306 Sum_probs=143.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.+.|++.++||+|+||+||+|++. +|+.||||+++.+.. ..+|++++++++|||||++++++.+++..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 456888999999999999999986 489999999975432 24699999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-cEEEeccccccccCCCccc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM-VAHLSDFGIAKLLSGEESM 815 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~-~~kl~DFg~a~~~~~~~~~ 815 (832)
|+||+|.+++++.+ .+++..+..++.||+.||+||| +++||||||||+|||++.+| .+||+|||+|+........
T Consensus 132 ~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~ 207 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG 207 (336)
T ss_dssp CTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcc
Confidence 99999999998754 6999999999999999999999 99999999999999999988 6999999999977543321
Q ss_pred ----ccccccccccccCCCCC
Q 003301 816 ----KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 816 ----~~~~~~gt~~y~APE~l 832 (832)
.....+||+.|||||++
T Consensus 208 ~~~~~~~~~~GT~~YmAPE~~ 228 (336)
T 4g3f_A 208 KSLLTGDYIPGTETHMAPEVV 228 (336)
T ss_dssp ------CCCCCCGGGCCHHHH
T ss_pred cceecCCccccCccccCHHHH
Confidence 12235799999999974
No 51
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=6e-37 Score=319.41 Aligned_cols=169 Identities=28% Similarity=0.389 Sum_probs=141.3
Q ss_pred cCCCCCCeeeccCCceEEEEEec----CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL----DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
++|++.+.||+|+||+||+|++. .++.||||+++... ......+.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999874 36789999987543 2233568889999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
|||||+||+|.+++++.+ .+++..+..++.|++.||+||| ++||+||||||+|||++.+|.+||+|||+|+.....
T Consensus 104 vmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 179 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH 179 (304)
T ss_dssp EECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred EEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence 999999999999998754 6999999999999999999999 999999999999999999999999999999875443
Q ss_pred cccccccccccccccCCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~l 832 (832)
.. .....+||+.|||||++
T Consensus 180 ~~-~~~~~~GT~~YmAPE~~ 198 (304)
T 3ubd_A 180 EK-KAYSFCGTVEYMAPEVV 198 (304)
T ss_dssp -C-CCCSCCCCGGGCCHHHH
T ss_pred Cc-cccccccCcccCCHHHh
Confidence 32 23346799999999974
No 52
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=7.8e-36 Score=312.75 Aligned_cols=172 Identities=26% Similarity=0.435 Sum_probs=137.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCC-------
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNND------- 728 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------- 728 (832)
.++|++.+.||+|+||+||+|++. +|+.||||+++... +...+.+.+|++++++++|||||+++++|.+.+
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 356999999999999999999986 58999999997544 334567899999999999999999999987543
Q ss_pred -----eeEEEEecCCCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEe
Q 003301 729 -----FKALVLEYMPNGSLEDYLYSNNF--SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLS 801 (832)
Q Consensus 729 -----~~~lv~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 801 (832)
..|+|||||++|+|.+++..... ..++..+..++.|++.||+||| ++||+||||||+|||++.++.+||+
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEc
Confidence 37999999999999999986542 2456778899999999999999 9999999999999999999999999
Q ss_pred ccccccccCCCccc-----------ccccccccccccCCCCC
Q 003301 802 DFGIAKLLSGEESM-----------KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 802 DFg~a~~~~~~~~~-----------~~~~~~gt~~y~APE~l 832 (832)
|||+|+........ ..+..+||+.|||||++
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~ 202 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI 202 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHH
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHH
Confidence 99999876543221 12235799999999964
No 53
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=5.4e-36 Score=314.72 Aligned_cols=171 Identities=24% Similarity=0.407 Sum_probs=146.2
Q ss_pred cCCCCCCeeeccCCceEEEEEec------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKA 731 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 731 (832)
.++++.++||+|+||+||+|++. +++.||||+++... ....+.|.+|+.++++++|||||+++|+|.+++..|
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence 45677899999999999999873 36789999987543 234578999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC
Q 003301 732 LVLEYMPNGSLEDYLYSNN---------------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM 796 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~ 796 (832)
+|||||++|+|.+++.... ..+++..+.+|+.|||.||+||| +++||||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG
T ss_pred EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCC
Confidence 9999999999999996532 34899999999999999999999 99999999999999999999
Q ss_pred cEEEeccccccccCCCccc-ccccccccccccCCCCC
Q 003301 797 VAHLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 797 ~~kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~l 832 (832)
.+||+|||+|+........ .....+||++|||||++
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l 219 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAI 219 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHH
T ss_pred CEEECCcccceeccCCCceeEecccccCCcccCHHHH
Confidence 9999999999876443322 23345799999999963
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-34 Score=337.67 Aligned_cols=310 Identities=22% Similarity=0.251 Sum_probs=153.9
Q ss_pred CCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceec
Q 003301 94 LPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILG 173 (832)
Q Consensus 94 l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~ 173 (832)
+.+++.|++++|.++...+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 44555555555555533333344555555555555555554444555555555555555555544444445555555555
Q ss_pred ccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcC
Q 003301 174 LQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSF 253 (832)
Q Consensus 174 L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i 253 (832)
|++|.++++.+..|.++++|++|+|++|.+ +++.|..|..+++|++|+|++|.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l--------------------------~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNL--------------------------ERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC--------------------------CBCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcC--------------------------CCCChhhhhcCCcCcEEECcCCCC
Confidence 555555443333334444444444444444 334444444455555555555555
Q ss_pred cccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccc
Q 003301 254 SGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRG 333 (832)
Q Consensus 254 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 333 (832)
++.. +..+++|+.|++++|.++. +...++|+.|++++|.+....+. +
T Consensus 184 ~~~~---~~~l~~L~~L~l~~n~l~~----------l~~~~~L~~L~ls~n~l~~~~~~-~------------------- 230 (597)
T 3oja_B 184 THVD---LSLIPSLFHANVSYNLLST----------LAIPIAVEELDASHNSINVVRGP-V------------------- 230 (597)
T ss_dssp SBCC---GGGCTTCSEEECCSSCCSE----------EECCTTCSEEECCSSCCCEEECS-C-------------------
T ss_pred CCcC---hhhhhhhhhhhcccCcccc----------ccCCchhheeeccCCcccccccc-c-------------------
Confidence 4432 2334455555555555443 22234455555555555422111 1
Q ss_pred cccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCC
Q 003301 334 TIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGD 413 (832)
Q Consensus 334 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 413 (832)
.++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..
T Consensus 231 --------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 299 (597)
T 3oja_B 231 --------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP 299 (597)
T ss_dssp --------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC
T ss_pred --------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc
Confidence 1234444444444443 2344445555555555555554445555555555555555555553 3444455
Q ss_pred CCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCC
Q 003301 414 LTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSG 477 (832)
Q Consensus 414 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 477 (832)
+++|+.|+|++|.+++ +|..+..+++|++|+|++|.+++. | +..++.|+.|+|++|.+.+
T Consensus 300 l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 5555555555555553 344455555566666666665543 1 4555666666666666654
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3e-35 Score=313.31 Aligned_cols=252 Identities=32% Similarity=0.498 Sum_probs=230.1
Q ss_pred CCCcEEeccCCCCCC--CCCCcccccccccceEEeec-CcccccccccccCcCcccEEEeecCcccccccccccCCCCCc
Q 003301 294 KNLKLLDLSNNPING--VLPSSIGNLSLSLSRIFISN-CSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQ 370 (832)
Q Consensus 294 ~~L~~L~L~~N~l~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 370 (832)
.+++.|+|++|.+.+ .+|..+..+. +|++|++++ |.+.+.+|..|.++++|++|+|++|++++..|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467788888888877 7777787776 888888884 888888899999999999999999999988999999999999
Q ss_pred eEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCC-CCCeEeCCCCcCCCCCCcccccCcccceeeecCC
Q 003301 371 GLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLT-SLRLLSLASNELNSVIPSTFWNLKDILSLNFSSN 449 (832)
Q Consensus 371 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 449 (832)
+|+|++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++..|..|..+. |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999989999999999999999999999988999999998 999999999999999999999987 999999999
Q ss_pred cccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCch
Q 003301 450 FLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPT 529 (832)
Q Consensus 450 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 529 (832)
++++..|..|..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..|+.+++|+.|+|++|+++|.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999976665 88899999999999999999999999999999999999999999998
Q ss_pred hhhhhccCCeeeCCCCc-ccc
Q 003301 530 SMEKLLYLKDLNLSFNK-LEG 549 (832)
Q Consensus 530 ~~~~l~~L~~l~l~~N~-l~~ 549 (832)
. ..+++|+.+++++|+ ++|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEES
T ss_pred C-ccccccChHHhcCCCCccC
Confidence 7 889999999999999 554
No 56
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=5.3e-35 Score=308.18 Aligned_cols=170 Identities=27% Similarity=0.414 Sum_probs=137.7
Q ss_pred cCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCC----eeEEEE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNND----FKALVL 734 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ 734 (832)
++|.+.++||+|+||+||+|++ +|+.||||++...... .....+|+..+.+++|||||++++++.+++ ..|+||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchh-hHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 4678889999999999999998 7899999998754322 123344666667889999999999998654 579999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFG-----YSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-----~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
|||++|+|.++++.. .+++..+.+++.|++.||+|+|.. +..+||||||||+|||++.++.+||+|||+|+..
T Consensus 81 Ey~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp ECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred cCCCCCcHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccc
Confidence 999999999999875 489999999999999999999921 1239999999999999999999999999999876
Q ss_pred CCCccc---ccccccccccccCCCCC
Q 003301 810 SGEESM---KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 810 ~~~~~~---~~~~~~gt~~y~APE~l 832 (832)
...... .....+||+.|||||++
T Consensus 159 ~~~~~~~~~~~~~~~GT~~ymAPE~l 184 (303)
T 3hmm_A 159 DSATDTIDIAPNHRVGTKRYMAPEVL 184 (303)
T ss_dssp ETTTTEESCC-----CCGGGCCHHHH
T ss_pred cCCCCceeeecccccccccccCHHHh
Confidence 543322 12235799999999963
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2e-33 Score=302.47 Aligned_cols=294 Identities=23% Similarity=0.266 Sum_probs=164.1
Q ss_pred cccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceee
Q 003301 192 AMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLR 271 (832)
Q Consensus 192 ~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 271 (832)
+++.+++++|.+. .+|..+ .++|++|++++|+++++.+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 4666666666665 455433 24566666666666666566666666666666666666655555566666666666
Q ss_pred cccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEee
Q 003301 272 LSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLW 351 (832)
Q Consensus 272 L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 351 (832)
+++|.++.++... . + +|++|++++|++++..+..|..+++|++|+++
T Consensus 109 L~~n~l~~l~~~~------~--~-------------------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 109 ISKNHLVEIPPNL------P--S-------------------------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CCSSCCCSCCSSC------C--T-------------------------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCCcCCccCccc------c--c-------------------------cCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 6655555433221 0 3 44444444444444445556777777778887
Q ss_pred cCccc--ccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCC
Q 003301 352 GNELI--GSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNS 429 (832)
Q Consensus 352 ~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 429 (832)
+|.++ +..+..|..+ +|++|++++|++++ +|..+. ++|++|++++|++++..+..|..+++|+.|++++|++++
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 77775 3556667666 77777777777774 444333 456666666666665555555555666666665555555
Q ss_pred CCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccC
Q 003301 430 VIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGG 509 (832)
Q Consensus 430 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 509 (832)
..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+.. -..
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~------------------~~~ 292 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF------------------GVK 292 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC------------------CSS
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc------------------ccc
Confidence 55555555555555555555554 34444444455555555555544443333332200 000
Q ss_pred CCCCCeeccCCCccc--ccCchhhhhhccCCeeeCCCCc
Q 003301 510 LVSLESLDLSNNSLS--GNIPTSMEKLLYLKDLNLSFNK 546 (832)
Q Consensus 510 l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~l~l~~N~ 546 (832)
..+|+.|++++|++. +..|..+..++.|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 245566666666665 4555566666666666666653
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.7e-33 Score=300.40 Aligned_cols=177 Identities=19% Similarity=0.253 Sum_probs=125.7
Q ss_pred CCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCC--CCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCccccee
Q 003301 367 QNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLS--GPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSL 444 (832)
Q Consensus 367 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 444 (832)
++|++|++++|++++..+..|..+++|++|++++|.++ +..|..|..+ +|+.|++++|+++++. ..+. ++|++|
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~-~~~~--~~L~~L 198 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP-KDLP--ETLNEL 198 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC-SSSC--SSCSCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC-cccc--CCCCEE
Confidence 44555555555555444444555555555555555553 2455556666 6777777777776633 3222 567777
Q ss_pred eecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCccc
Q 003301 445 NFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLS 524 (832)
Q Consensus 445 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 524 (832)
++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..++.+++|+.|++++|+++
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 77777777777777888888888888888888777778888888888888888888 67778888888888888888888
Q ss_pred ccCchhhhh------hccCCeeeCCCCccc
Q 003301 525 GNIPTSMEK------LLYLKDLNLSFNKLE 548 (832)
Q Consensus 525 ~~~p~~~~~------l~~L~~l~l~~N~l~ 548 (832)
+..+..+.. ...|+.|++++|++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccChhHccccccccccccccceEeecCccc
Confidence 777766654 367899999999997
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.9e-33 Score=298.14 Aligned_cols=295 Identities=21% Similarity=0.249 Sum_probs=158.2
Q ss_pred cccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceee
Q 003301 192 AMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLR 271 (832)
Q Consensus 192 ~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 271 (832)
+++.++++++.+. .+|..+ .+++++|+|++|+++++.+..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 5666666666665 445433 24556666666666655555555555666666666655555555555555555555
Q ss_pred cccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEee
Q 003301 272 LSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLW 351 (832)
Q Consensus 272 L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 351 (832)
+++|.++.++. .+. .+|++|++++|.+++..+..|.++++|++|+++
T Consensus 107 Ls~n~l~~l~~------------------------------~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 107 LSKNQLKELPE------------------------------KMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CCSSCCSBCCS------------------------------SCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCCcCCccCh------------------------------hhc---ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 55555543322 211 144444444444444555556666777777777
Q ss_pred cCcccc--cccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCC
Q 003301 352 GNELIG--SIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNS 429 (832)
Q Consensus 352 ~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 429 (832)
+|.+.. ..+..|..+++|++|++++|+++. +|..+. ++|++|++++|++++..|..|..+++|+.|++++|.+++
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 776643 455566666666666666666663 443332 456666666666655555555555666666665555555
Q ss_pred CCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccC
Q 003301 430 VIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGG 509 (832)
Q Consensus 430 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 509 (832)
..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.... ....
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~ 291 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTK 291 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTT
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccc
Confidence 55555555555555555555554 3444444455555555555555444333333210 0001
Q ss_pred CCCCCeeccCCCcccc--cCchhhhhhccCCeeeCCCCc
Q 003301 510 LVSLESLDLSNNSLSG--NIPTSMEKLLYLKDLNLSFNK 546 (832)
Q Consensus 510 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~l~~N~ 546 (832)
...|+.|++++|++.. ..|..+..+..++.++|++|+
T Consensus 292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2455666666666542 445556666666666666663
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.2e-32 Score=296.27 Aligned_cols=289 Identities=24% Similarity=0.308 Sum_probs=182.3
Q ss_pred CCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceecccccccccccCcccccCCcccEEEe
Q 003301 119 KELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLAL 198 (832)
Q Consensus 119 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 198 (832)
.++++++++++.++ .+|..+. ++|++|+|++|++++..+..|+++++|++|++++|++++..|.+|.++++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36888888888887 4666554 57888888888888666667888888888888888888877888888888888888
Q ss_pred cCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcc--cCCccccCccccceeeccccc
Q 003301 199 PSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSG--FIPNTLGNLRKLEWLRLSYNF 276 (832)
Q Consensus 199 ~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~N~ 276 (832)
++|.++ .+|..+ .++|++|++++|+++++.+..|.++++|++|++++|.++. ..+..|
T Consensus 108 s~n~l~-~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------- 167 (330)
T 1xku_A 108 SKNQLK-ELPEKM----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF--------------- 167 (330)
T ss_dssp CSSCCS-BCCSSC----CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG---------------
T ss_pred CCCcCC-ccChhh----cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc---------------
Confidence 888876 455433 2556666666666665555555555566666666555542 333344
Q ss_pred CCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCccc
Q 003301 277 LTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELI 356 (832)
Q Consensus 277 l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 356 (832)
..+++|++|++++|.++. +|..+. .+|++|++++|++++..|..|..+++|++|++++|.++
T Consensus 168 --------------~~l~~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 168 --------------QGMKKLSYIRIADTNITT-IPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp --------------GGCTTCCEEECCSSCCCS-CCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred --------------cCCCCcCEEECCCCcccc-CCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 445555555555555542 222221 24555555555555555666667777777777777777
Q ss_pred ccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCC------CCCCeEeCCCCcCCC-
Q 003301 357 GSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDL------TSLRLLSLASNELNS- 429 (832)
Q Consensus 357 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l------~~L~~L~L~~N~l~~- 429 (832)
+..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|... +.|+.|++++|++..
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 666666777777777777777776 566666666677777777777765555555432 445555555555532
Q ss_pred -CCCcccccCcccceeeecCC
Q 003301 430 -VIPSTFWNLKDILSLNFSSN 449 (832)
Q Consensus 430 -~~~~~~~~l~~L~~L~Ls~N 449 (832)
+.|..|..+.+++.++|++|
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC---
T ss_pred ccCccccccccceeEEEeccc
Confidence 33344444444444444444
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.6e-37 Score=351.05 Aligned_cols=358 Identities=20% Similarity=0.203 Sum_probs=182.3
Q ss_pred CccEEECcCCcccccCCCC-CcCCCcCceEEeccccccc----ccCccccCccccceecccccccccccCcccc-cCCcc
Q 003301 120 ELIVISLAYNQFTERIPRG-LGNLTSLKTLYLGFNNLTG----EIPYEMGNLRNLEILGLQLNKLVGFVPTSIF-NLSAM 193 (832)
Q Consensus 120 ~L~~L~Ls~n~i~~~~p~~-~~~l~~L~~L~Ls~N~i~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L 193 (832)
+|++|+|++|+++...... +..+++|++|+|++|+++. .++..+..+++|++|+|++|++....+..+. .++.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~- 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT- 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS-
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh-
Confidence 4555555555554322221 4445555555555555542 1233444445555555555554432222221 1220
Q ss_pred cEEEecCCCCCCCCCccccccCCCCccEEEccCCcccc----ccCCcccCCCCccEEEcCCCcCcccCCcccc-----Cc
Q 003301 194 KTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSG----IIPSFIFNASKLSVLELGENSFSGFIPNTLG-----NL 264 (832)
Q Consensus 194 ~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-----~l 264 (832)
..++|++|+|++|+++. ..+..+..+++|++|++++|.+++..+..+. ..
T Consensus 83 ---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 83 ---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp ---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 00145555555555552 3355556666666666666666543333222 23
Q ss_pred cccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccc----cccccceEEeecCccccc----cc
Q 003301 265 RKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGN----LSLSLSRIFISNCSIRGT----IP 336 (832)
Q Consensus 265 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----~~~~L~~L~l~~n~l~~~----~~ 336 (832)
++|++|++++|.++..... .++..+..+++|++|++++|.+.+..+..+.. ...+|++|++++|.+++. ++
T Consensus 142 ~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCE-PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp CCCCEEECTTSCCBGGGHH-HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred CcceEEECCCCCCCHHHHH-HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 4566666666666542221 12344556667777777777665433222222 112566666666665542 35
Q ss_pred ccccCcCcccEEEeecCcccccc-----cccccCCCCCceEEccCCccCCC----CchhhcCCCCCcEEEecCCcCCCCC
Q 003301 337 KEIGNLINLRELGLWGNELIGSI-----PITFGKLQNLQGLDLVNNKLEGP----IPNGLCQLARLSVLYMDGNKLSGPI 407 (832)
Q Consensus 337 ~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~ 407 (832)
..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++++. ++..+..+++|++|++++|.+++..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 55666677777777777665432 22233466677777777766643 4555555666777777776665433
Q ss_pred cccCC-----CCCCCCeEeCCCCcCCCC----CCcccccCcccceeeecCCcccCCCcccccc-----ccccceecccCc
Q 003301 408 PPCIG-----DLTSLRLLSLASNELNSV----IPSTFWNLKDILSLNFSSNFLNGSLPEDIGN-----LKVVVIIDLSRN 473 (832)
Q Consensus 408 p~~~~-----~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N 473 (832)
+..+. ..++|+.|++++|.+++. .+..+..+++|++|++++|++++..+..+.. .+.|+.|+|++|
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 32222 224666666666666543 2333444455555555555555433332221 334555555555
Q ss_pred ccCC----ccCCccccccccceeeccccccc
Q 003301 474 NLSG----DIPTAIGGLMNLQDLSLRDNGLQ 500 (832)
Q Consensus 474 ~l~~----~~~~~~~~l~~L~~L~Ls~N~l~ 500 (832)
++++ .+|..+..+++|++|+|++|+++
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 5543 34444444555555555555544
No 62
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=1.7e-34 Score=308.76 Aligned_cols=181 Identities=22% Similarity=0.395 Sum_probs=152.8
Q ss_pred cchHHHHHHhcCCCCCCeeeccCCceEEEEEecC------CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCC-Cceeee
Q 003301 649 FSYKELLQATNQFNASNLIGTGGFGSVYKGSFLD------GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRH-RNLVKI 720 (832)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h-~niv~l 720 (832)
+..++++...++|++.+.||+|+||+||+|++.. ++.||||++.... ....+.+.+|++++++++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 4555666677899999999999999999998753 3679999987554 3345779999999999965 899999
Q ss_pred ceEEecC-CeeEEEEecCCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecC
Q 003301 721 ISSCTNN-DFKALVLEYMPNGSLEDYLYSNN---------------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCD 784 (832)
Q Consensus 721 ~~~~~~~-~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D 784 (832)
+|+|.+. +..|+|||||++|+|.++++..+ ..+++..+..++.|||.||+||| +++|||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCc
Confidence 9998764 57899999999999999997532 24789999999999999999999 99999999
Q ss_pred CCCCCeEeCCCCcEEEeccccccccCCCcc-cccccccccccccCCCCC
Q 003301 785 IKPSNVLLDKDMVAHLSDFGIAKLLSGEES-MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 785 lkp~NIl~~~~~~~kl~DFg~a~~~~~~~~-~~~~~~~gt~~y~APE~l 832 (832)
|||+|||+++++.+||+|||+|+....... ......+||+.|||||++
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l 259 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI 259 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHH
T ss_pred cCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHH
Confidence 999999999999999999999987654433 233446799999999964
No 63
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=2.2e-33 Score=317.69 Aligned_cols=168 Identities=27% Similarity=0.393 Sum_probs=145.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHH---HHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSF---DVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~---~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
.++|++.++||+|+||+||+|++.. |+.||||++.... ....... ..++++++.++|||||+++++|.+.+.+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 4789999999999999999999864 8999999997542 1122233 3346677888999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
|+|||||+||+|.+++.+.+ .+++..+..++.||+.||+||| ++|||||||||+|||++.+|.+||+|||+|+...
T Consensus 268 ylVmEy~~GGdL~~~l~~~~-~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~ 343 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFS 343 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred EEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeecC
Confidence 99999999999999998754 6999999999999999999999 9999999999999999999999999999998765
Q ss_pred CCcccccccccccccccCCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~l 832 (832)
... ....+||+.|||||++
T Consensus 344 ~~~---~~t~~GTp~YmAPEvl 362 (689)
T 3v5w_A 344 KKK---PHASVGTHGYMAPEVL 362 (689)
T ss_dssp SCC---CCSCCSCGGGCCHHHH
T ss_pred CCC---CCCccCCcCccCHHHH
Confidence 433 2346899999999974
No 64
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=306.17 Aligned_cols=169 Identities=27% Similarity=0.386 Sum_probs=144.6
Q ss_pred cCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEec------CCe
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTN------NDF 729 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~ 729 (832)
++|++.+.||+|+||+||+|.+. +|+.||||+++... ....+.+.+|++++++++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999986 59999999997543 2344678899999999999999999998764 357
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
+|+|||||+ |+|.+++...+ .+++..+..+++||+.||+||| ++|||||||||+|||++.++.+||+|||+|+.+
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~-~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~ 208 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQ-PLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGL 208 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC
T ss_pred EEEEEeCCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeeec
Confidence 899999995 78999997654 7999999999999999999999 999999999999999999999999999999876
Q ss_pred CCCc---ccccccccccccccCCCCC
Q 003301 810 SGEE---SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 810 ~~~~---~~~~~~~~gt~~y~APE~l 832 (832)
.... .......+||+.|||||++
T Consensus 209 ~~~~~~~~~~~~~~~GT~~Y~APEv~ 234 (398)
T 4b99_A 209 CTSPAEHQYFMTEYVATRWYRAPELM 234 (398)
T ss_dssp -------CCCCCSSCCCCTTCCHHHH
T ss_pred ccCccccccccccceeChHhcCHHHh
Confidence 4322 1223346899999999963
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=5.5e-36 Score=338.46 Aligned_cols=389 Identities=17% Similarity=0.132 Sum_probs=236.1
Q ss_pred ccccCeEeccCCccccCCCc-cccccccCcEEEccCCcCCC----CCCCcccCcccccccccccccccccCCChhhhhcC
Q 003301 20 LTMLKKLGLGYNKLRGEIPQ-ELGNLAELELVSLTNNFLSG----TIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRL 94 (832)
Q Consensus 20 l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l 94 (832)
.++|++|||++|+++..... .+..+++|++|++++|.++. .+|..+..++++ ++||+++|.+++..+..++..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL-AELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTC-CEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCc-CEEeCCCCcCChHHHHHHHHHH
Confidence 35788899999988733322 37788899999999998874 345556666777 7888888887755555565556
Q ss_pred C----CceEEEccCCcccc----cCCCCccCCCCccEEECcCCcccccCCCCC-----cCCCcCceEEecccccccc---
Q 003301 95 P----LIKGLYMSNNKLTG----PIPNNIWQCKELIVISLAYNQFTERIPRGL-----GNLTSLKTLYLGFNNLTGE--- 158 (832)
Q Consensus 95 ~----~L~~L~l~~N~l~~----~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~-----~~l~~L~~L~Ls~N~i~~~--- 158 (832)
+ +|++|++++|+++. .++..+..+++|++|+|++|.+++..+..+ ...++|++|+|++|++++.
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 5 58888888888773 446677777788888888887765433322 2245677777777777653
Q ss_pred -cCccccCccccceecccccccccccCcccc-----cCCcccEEEecCCCCCCC----CCccccccCCCCccEEEccCCc
Q 003301 159 -IPYEMGNLRNLEILGLQLNKLVGFVPTSIF-----NLSAMKTLALPSNALSGS----LPSSIDLVRLPNLEIISLAGNN 228 (832)
Q Consensus 159 -~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~ 228 (832)
++..+..+++|++|++++|++....+..+. ..++|++|++++|.+++. ++.. +..+++|++|++++|.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI--VASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH--HHHCTTCCEEECCSSB
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH--HHhCCCccEEeccCCc
Confidence 244555667777777777776644333332 244666666666665532 1221 1234455555555554
Q ss_pred cccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCC
Q 003301 229 FSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPING 308 (832)
Q Consensus 229 i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 308 (832)
++......+ .+..+..+++|++|++++|.++..... .++..+..+++|++|++++|.+.+
T Consensus 239 l~~~~~~~l-------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 239 LGDVGMAEL-------------------CPGLLHPSSRLRTLWIWECGITAKGCG-DLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp CHHHHHHHH-------------------HHHHTSTTCCCCEEECTTSCCCHHHHH-HHHHHHHHCTTCCEEECTTCCCHH
T ss_pred CChHHHHHH-------------------HHHHhcCCCCceEEECcCCCCCHHHHH-HHHHHHhhCCCcceEECCCCCCch
Confidence 443211000 011122344455555555544431110 123334445555555555555543
Q ss_pred CCCCccccc----ccccceEEeecCccccc----ccccccCcCcccEEEeecCcccccccccccC-----CCCCceEEcc
Q 003301 309 VLPSSIGNL----SLSLSRIFISNCSIRGT----IPKEIGNLINLRELGLWGNELIGSIPITFGK-----LQNLQGLDLV 375 (832)
Q Consensus 309 ~~~~~~~~~----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls 375 (832)
..+..+... ..+|++|++++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|++|+|+
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 222222221 12566666666666543 4566677788999999999887665554443 6789999999
Q ss_pred CCccCC----CCchhhcCCCCCcEEEecCCcCCCCCccc----C-CCCCCCCeEeCCCCcCCCCC
Q 003301 376 NNKLEG----PIPNGLCQLARLSVLYMDGNKLSGPIPPC----I-GDLTSLRLLSLASNELNSVI 431 (832)
Q Consensus 376 ~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~----~-~~l~~L~~L~L~~N~l~~~~ 431 (832)
+|++++ .+|..+..+++|++|++++|++++..... + ....+|+.|++.++.+....
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence 999885 67788888899999999999887532111 1 12456888888777765433
No 66
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=4.2e-33 Score=300.25 Aligned_cols=168 Identities=25% Similarity=0.358 Sum_probs=143.4
Q ss_pred HHhcCCCCCCeeeccCCceEEEEEec----CCcEEEEEEEeccchhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCee
Q 003301 656 QATNQFNASNLIGTGGFGSVYKGSFL----DGMEVAIKVFHLQLEGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 656 ~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~ 730 (832)
+..++|++.++||+|+||+||+|+++ .++.||+|++.... ...++.+|+++++.+ +|||||++++++.+++..
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~ 95 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV 95 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence 34578999999999999999999864 36789999986543 235678999999988 699999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CcEEEecccccccc
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKD-MVAHLSDFGIAKLL 809 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~-~~~kl~DFg~a~~~ 809 (832)
|+|||||++|+|.++++ .+++.++..++.|++.||+||| ++||+||||||+|||++.+ +.+||+|||+|+..
T Consensus 96 ~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~ 168 (361)
T 4f9c_A 96 VIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGT 168 (361)
T ss_dssp EEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCccc
Confidence 99999999999999984 4899999999999999999999 9999999999999999876 89999999999865
Q ss_pred CCCcc---------------------------cccccccccccccCCCCC
Q 003301 810 SGEES---------------------------MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 810 ~~~~~---------------------------~~~~~~~gt~~y~APE~l 832 (832)
..... ......+||+.|||||++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l 218 (361)
T 4f9c_A 169 HDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVL 218 (361)
T ss_dssp TTCSCGGGGGC--------------------------CCCCGGGCCHHHH
T ss_pred CCccccccccccccccccccccccccccccccccccccccCccccCHHHH
Confidence 43221 012235799999999963
No 67
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.97 E-value=2.3e-32 Score=312.66 Aligned_cols=170 Identities=23% Similarity=0.369 Sum_probs=153.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.++|++.+.||+|+||+||+|.++ +|+.||+|++........+.+.+|+++++.++|||||++++++.+++..|+||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 468999999999999999999886 4899999999877666667889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC--CcEEEeccccccccCCCcc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKD--MVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~--~~~kl~DFg~a~~~~~~~~ 814 (832)
|+||+|.+++......+++..+..+++||+.||+||| +++|+||||||+|||++.+ +.+||+|||+|+.+.....
T Consensus 236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~ 312 (573)
T 3uto_A 236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS 312 (573)
T ss_dssp CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSE
T ss_pred cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCc
Confidence 9999999999876667999999999999999999999 9999999999999999854 8999999999998755432
Q ss_pred cccccccccccccCCCCC
Q 003301 815 MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~l 832 (832)
....+||+.|||||++
T Consensus 313 --~~~~~GT~~y~APEv~ 328 (573)
T 3uto_A 313 --VKVTTGTAEFAAPEVA 328 (573)
T ss_dssp --EEEECSSGGGCCHHHH
T ss_pred --eeeeEECccccCHHHh
Confidence 3346799999999974
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=290.33 Aligned_cols=258 Identities=20% Similarity=0.204 Sum_probs=170.8
Q ss_pred CCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEc
Q 003301 295 NLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDL 374 (832)
Q Consensus 295 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 374 (832)
+|++|++++|.+++..+..+..+. +|++|++++|++++..|..|.++++|++|++++|++++..+..|..+++|++|+|
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 444444444444433333444433 4555555555555555556666677777777777776655555677777777777
Q ss_pred cCCccCCCCc-hhhcCCCCCcEEEecCC-cCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCccc
Q 003301 375 VNNKLEGPIP-NGLCQLARLSVLYMDGN-KLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLN 452 (832)
Q Consensus 375 s~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 452 (832)
++|++++..+ ..+..+++|++|++++| .+.+..+..|.++++|+.|++++|.+++..|..|..+++|++|++++|+++
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 7777764333 35666777777777777 355555666777777777777777777777777777777777777777776
Q ss_pred CCCccccccccccceecccCcccCCccCCccc---cccccceeecccccccc----cCCccccCCCCCCeeccCCCcccc
Q 003301 453 GSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIG---GLMNLQDLSLRDNGLQG----SIPKSIGGLVSLESLDLSNNSLSG 525 (832)
Q Consensus 453 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~ 525 (832)
...+..+..+++|+.|++++|++++..+..+. ....++.++|++|.+++ .+|..++.+++|+.|||++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 44333445577777777777777765544433 24556667777776665 467788889999999999999985
Q ss_pred cCchhhhhhccCCeeeCCCCcccccCCC
Q 003301 526 NIPTSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 526 ~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
..+..+..+++|++|+|++|+++|.+|.
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 4333468899999999999999998874
No 69
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.97 E-value=7.7e-32 Score=298.45 Aligned_cols=180 Identities=22% Similarity=0.337 Sum_probs=157.1
Q ss_pred chHHHHHHhcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEe
Q 003301 650 SYKELLQATNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCT 725 (832)
Q Consensus 650 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~ 725 (832)
.+.++....++|++.++||+|+||+||+|++.. ++.||+|++.... ....+.+.+|+.+++.++||||+++++++.
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 344555567899999999999999999999875 7889999997532 222345888999999999999999999999
Q ss_pred cCCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccc
Q 003301 726 NNDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGI 805 (832)
Q Consensus 726 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~ 805 (832)
+++..|+|||||++|+|.+++.+....+++..+..++.|++.||+||| +.||+||||||+|||++.++.+||+|||+
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGl 221 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGS 221 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred eCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhh
Confidence 999999999999999999999876567999999999999999999999 99999999999999999999999999999
Q ss_pred ccccCCCcccccccccccccccCCCCC
Q 003301 806 AKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 806 a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
|+.............+||+.|||||++
T Consensus 222 a~~~~~~~~~~~~~~~GT~~Y~APE~l 248 (437)
T 4aw2_A 222 CLKLMEDGTVQSSVAVGTPDYISPEIL 248 (437)
T ss_dssp CEECCTTSCEECCSCCSCGGGCCHHHH
T ss_pred hhhcccCCCcccccccCCcCeeChHHH
Confidence 987765544444456899999999963
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=8.2e-31 Score=278.75 Aligned_cols=230 Identities=22% Similarity=0.212 Sum_probs=111.8
Q ss_pred cceEEeecCcccccccccccCcCcccEEEeecCccccc--ccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEe
Q 003301 321 LSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGS--IPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYM 398 (832)
Q Consensus 321 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 398 (832)
+++|++++|+++...+..|.++++|++|++++|++... .+..+..+++|++|+|++|.++ .+|..+..+++|++|++
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEEC
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEEC
Confidence 33333333333332223344444444444444444321 1333344444555555555444 23444444445555555
Q ss_pred cCCcCCCCCc-ccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccC-CCccccccccccceecccCcccC
Q 003301 399 DGNKLSGPIP-PCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNG-SLPEDIGNLKVVVIIDLSRNNLS 476 (832)
Q Consensus 399 ~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~ 476 (832)
++|++++..+ ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++ ..|..+..+++|++|+|++|+++
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 5555443332 344455555555555555554444455555555555555555543 34445555555555555555555
Q ss_pred CccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhc-cCCeeeCCCCcccccC
Q 003301 477 GDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLL-YLKDLNLSFNKLEGEI 551 (832)
Q Consensus 477 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~l~l~~N~l~~~~ 551 (832)
+..|..|.++++|+.|+|++|++++..+..+..+++|+.|||++|++++..|..+..++ +|+.|+|++|+++|.+
T Consensus 189 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 44455555555555555555555544444455555555555555555555555555542 5555555555555544
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.2e-30 Score=275.44 Aligned_cols=278 Identities=21% Similarity=0.242 Sum_probs=214.9
Q ss_pred cEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccce
Q 003301 244 SVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSR 323 (832)
Q Consensus 244 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 323 (832)
+.++.+++.++.+ |..+. ++|++|++++|.++.++.. .|..+++|++|++++|++...
T Consensus 10 ~~l~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~i~~~-----~~~~l~~L~~L~L~~n~l~~~-------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHG-----VFDKLTQLTKLSLSSNGLSFK-------------- 67 (306)
T ss_dssp TEEECCSSCCSSC-CSCCC--TTCCEEECCSSCCCCCCTT-----TTTTCTTCSEEECCSSCCCEE--------------
T ss_pred CEEEcCCCCcccC-CCCCC--CCCCEEECCCCccCccCHh-----HhhccccCCEEECCCCccCcc--------------
Confidence 3455666665533 22221 4555566666555543332 144555555555555554311
Q ss_pred EEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCc-hhhcCCCCCcEEEecCCc
Q 003301 324 IFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIP-NGLCQLARLSVLYMDGNK 402 (832)
Q Consensus 324 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 402 (832)
+..+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.
T Consensus 68 ---------~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 68 ---------GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ---------EEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ---------cCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 1235566678889999999998884 56668889999999999999986554 578888999999999999
Q ss_pred CCCCCcccCCCCCCCCeEeCCCCcCCC-CCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCC
Q 003301 403 LSGPIPPCIGDLTSLRLLSLASNELNS-VIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPT 481 (832)
Q Consensus 403 l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 481 (832)
+.+..+..|..+++|++|++++|.+++ ..|..|..+++|++|++++|++++..|..+..+++|+.|+|++|++++..+.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 988888889999999999999999987 6788899999999999999999988888999999999999999999988787
Q ss_pred ccccccccceeecccccccccCCccccCCC-CCCeeccCCCcccccCch--hhhhhccCCeeeCCCCcccccCCC
Q 003301 482 AIGGLMNLQDLSLRDNGLQGSIPKSIGGLV-SLESLDLSNNSLSGNIPT--SMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 482 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
.|.++++|+.|+|++|++++..|..+..++ +|+.|+|++|++++..+. ....+...+.+.+..+.+.|..|.
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 899999999999999999999999999985 999999999999876432 233455666777788888888776
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=3.2e-30 Score=289.76 Aligned_cols=252 Identities=21% Similarity=0.237 Sum_probs=208.0
Q ss_pred CcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEcc
Q 003301 296 LKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLV 375 (832)
Q Consensus 296 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 375 (832)
...++.+++.++ .+|..+. .++++|+|++|++++..|..|.++++|++|+|++|++.+..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 445666666665 3454433 367777777777777778888888888888888888888888888888888888888
Q ss_pred CCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCC-CcCCCCCCcccccCcccceeeecCCcccCC
Q 003301 376 NNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLAS-NELNSVIPSTFWNLKDILSLNFSSNFLNGS 454 (832)
Q Consensus 376 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 454 (832)
+|++++..+..|..+++|++|+|++|++++..+..|.++++|+.|++++ |.+..+.+..|.++++|++|+|++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 8888876667788888888888888888877777888888999999988 556666666788889999999999988854
Q ss_pred CccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhh
Q 003301 455 LPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKL 534 (832)
Q Consensus 455 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 534 (832)
| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 57888899999999999998888899999999999999999998888889999999999999999998888888889
Q ss_pred ccCCeeeCCCCcccccCCC
Q 003301 535 LYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 535 ~~L~~l~l~~N~l~~~~p~ 553 (832)
++|+.|+|++|++.|.|.-
T Consensus 290 ~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCCEEECCSSCEECSTTT
T ss_pred cCCCEEEccCCCcCCCCCc
Confidence 9999999999999887753
No 73
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=287.85 Aligned_cols=252 Identities=23% Similarity=0.259 Sum_probs=211.7
Q ss_pred CcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEcc
Q 003301 296 LKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLV 375 (832)
Q Consensus 296 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 375 (832)
.+.++.+++.++ .+|..+. .+++.|+|++|++++..+..|.++++|++|+|++|++.+..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 445666666665 4454443 267777777777777777888888899999999999888888888899999999999
Q ss_pred CCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCC-CcCCCCCCcccccCcccceeeecCCcccCC
Q 003301 376 NNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLAS-NELNSVIPSTFWNLKDILSLNFSSNFLNGS 454 (832)
Q Consensus 376 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 454 (832)
+|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++ |.+..+.+..|.++++|++|++++|+++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 9999876667788889999999999999877777888999999999998 45666666688899999999999999984
Q ss_pred CccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhh
Q 003301 455 LPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKL 534 (832)
Q Consensus 455 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 534 (832)
+| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|||++|+|++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 48889999999999999998889999999999999999999998888999999999999999999998888888899
Q ss_pred ccCCeeeCCCCcccccCCC
Q 003301 535 LYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 535 ~~L~~l~l~~N~l~~~~p~ 553 (832)
++|+.|+|++|+|.|.|.-
T Consensus 279 ~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCCEEECCSSCEECSSTT
T ss_pred cCCCEEEcCCCCccCCCCc
Confidence 9999999999999987753
No 74
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=282.46 Aligned_cols=274 Identities=18% Similarity=0.186 Sum_probs=137.4
Q ss_pred eEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEEEccC
Q 003301 25 KLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMSN 104 (832)
Q Consensus 25 ~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~ 104 (832)
..++++++++ .+|..+. ++|++|++++|.+++..+..+..+++| ++|++++|+++ .++...+..+++|++|++++
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L-~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNL-QALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTC-CEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCC-CEEECCCCccC-ccCHhhcCCCCCCCEEECCC
Confidence 3444444444 4444333 244444444444442222244444444 44444444444 22222222444455555555
Q ss_pred CcccccCCCCccCCCCccEEECcCCcccccCC-CCCcCCCcCceEEeccc-ccccccCccccCccccceecccccccccc
Q 003301 105 NKLTGPIPNNIWQCKELIVISLAYNQFTERIP-RGLGNLTSLKTLYLGFN-NLTGEIPYEMGNLRNLEILGLQLNKLVGF 182 (832)
Q Consensus 105 N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~Ls~N-~i~~~~p~~~~~l~~L~~L~L~~N~l~~~ 182 (832)
|++++..+..+..+++|++|++++|++++..+ ..|..+++|++|++++| .++...+..|+++++|++|++++|++++.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 55443222224444455555555555443222 24444555555555554 23433344444555555555555555544
Q ss_pred cCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCccc---CCCCccEEEcCCCcCcc----
Q 003301 183 VPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIF---NASKLSVLELGENSFSG---- 255 (832)
Q Consensus 183 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---~l~~L~~L~L~~N~i~~---- 255 (832)
.|..+.++++|++|++++|.+. .+|..+ +..+++|++|++++|++++..+..+. ..+.++.++++++.+++
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~-~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIF-VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCST-THHHHH-HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred CHHHHhccccCCeecCCCCccc-cchhhh-hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 4444555555555555555543 222221 22344555555555555544333222 24556677777776665
Q ss_pred cCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCC
Q 003301 256 FIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVL 310 (832)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 310 (832)
.+|..+..+++|++|++++|+++.++... |..+++|++|++++|++.+..
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~-----~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGI-----FDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCBCCCH
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHH-----HhcCCCCCEEEeeCCCccCcC
Confidence 24566777788888888888887655432 567788888888888877543
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=4.2e-30 Score=270.25 Aligned_cols=252 Identities=23% Similarity=0.257 Sum_probs=175.8
Q ss_pred cEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccC
Q 003301 297 KLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVN 376 (832)
Q Consensus 297 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 376 (832)
+.++.+++.++ .+|..+ ..++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666665 334332 22566666666666666666777777788888888777777777777777788888887
Q ss_pred Cc-cCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCC
Q 003301 377 NK-LEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSL 455 (832)
Q Consensus 377 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 455 (832)
|+ ++...|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 76 66555677777777777777777777766777777777777777777777776667777777777777777777655
Q ss_pred ccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhc
Q 003301 456 PEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLL 535 (832)
Q Consensus 456 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 535 (832)
+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|+++...+.. .-..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 556777777777777777777666777777777777777777777655566777777777777777776544432 2233
Q ss_pred cCCeeeCCCCcccccCCC
Q 003301 536 YLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 536 ~L~~l~l~~N~l~~~~p~ 553 (832)
.++.+..+.|.+.|..|.
T Consensus 249 ~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HHHHCCSEECCCBEEESG
T ss_pred HHHhcccccCccccCCch
Confidence 455555666777776665
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=6.9e-33 Score=323.47 Aligned_cols=444 Identities=16% Similarity=0.076 Sum_probs=261.5
Q ss_pred CCChhhhhcCCCceEEEccCCccc---ccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCc
Q 003301 85 SLPDDMCRRLPLIKGLYMSNNKLT---GPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPY 161 (832)
Q Consensus 85 ~lp~~~~~~l~~L~~L~l~~N~l~---~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~ 161 (832)
..|..++.++++|++|+++++... +.+|..++... ...++..+..+++|++|+|++|.+++..+.
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~------------~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~ 130 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV------------TPWVTEISNNLRQLKSVHFRRMIVSDLDLD 130 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBC------------HHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccc------------hHHHHHHHhhCCCCCeEEeeccEecHHHHH
Confidence 455666667777888888775421 23333222100 000000111344555555555555443333
Q ss_pred cccCc--cccceeccccccc-cc-ccCcccccCCcccEEEecCCCCCCCCCccc--cccCCCCccEEEccCCcccc----
Q 003301 162 EMGNL--RNLEILGLQLNKL-VG-FVPTSIFNLSAMKTLALPSNALSGSLPSSI--DLVRLPNLEIISLAGNNFSG---- 231 (832)
Q Consensus 162 ~~~~l--~~L~~L~L~~N~l-~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~~~l~~L~~L~Ls~n~i~~---- 231 (832)
.+... .+|++|+|++|.- .. .++....++++|++|+|++|.+.+..+.++ ....+++|++|++++|.+++
T Consensus 131 ~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~ 210 (592)
T 3ogk_B 131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK 210 (592)
T ss_dssp HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH
T ss_pred HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH
Confidence 44332 2255555555441 10 011112345556666666555543311110 02345666666666666652
Q ss_pred ccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCC
Q 003301 232 IIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLP 311 (832)
Q Consensus 232 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 311 (832)
..+..+..+++|++|++++|.+.+ .+..+..+++|++|+++......... .....+..+++|+.|+++++.. +.+|
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~-~~l~ 286 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMP--EKYMNLVFPRKLCRLGLSYMGP-NEMP 286 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCT--TSSSCCCCCTTCCEEEETTCCT-TTGG
T ss_pred HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchH--HHHHHhhccccccccCccccch-hHHH
Confidence 233344556777777777777765 44666777777777776532221101 2233456677777777777533 2455
Q ss_pred CcccccccccceEEeecCccccccc-ccccCcCcccEEEeecCcccccccccccCCCCCceEEccC-----------Ccc
Q 003301 312 SSIGNLSLSLSRIFISNCSIRGTIP-KEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVN-----------NKL 379 (832)
Q Consensus 312 ~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-----------N~l 379 (832)
..+..+. +|++|++++|.+++... ..+..+++|++|+++++-..+.++..+..+++|++|+|++ |.+
T Consensus 287 ~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 287 ILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred HHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 5555544 78888888877664433 3467788888888884333333444456678888888883 566
Q ss_pred CCCCch-hhcCCCCCcEEEecCCcCCCCCcccCCC-CCCCCeEeCC----CCcCCCC-----CCcccccCcccceeeecC
Q 003301 380 EGPIPN-GLCQLARLSVLYMDGNKLSGPIPPCIGD-LTSLRLLSLA----SNELNSV-----IPSTFWNLKDILSLNFSS 448 (832)
Q Consensus 380 ~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~~~~l~~L~~L~Ls~ 448 (832)
++.... ....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. .+..+.++++|++|++++
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 543222 2345788888888888887666666655 7888888885 6677664 233366788888998875
Q ss_pred Cc--ccCCCcccccc-ccccceecccCcccCC-ccCCccccccccceeeccccccccc-CCccccCCCCCCeeccCCCcc
Q 003301 449 NF--LNGSLPEDIGN-LKVVVIIDLSRNNLSG-DIPTAIGGLMNLQDLSLRDNGLQGS-IPKSIGGLVSLESLDLSNNSL 523 (832)
Q Consensus 449 N~--l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l 523 (832)
|. +++..+..+.. +++|+.|+|++|++++ .++..+.++++|++|+|++|.+++. ++..+..+++|+.|+|++|++
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 33 55544444443 7889999999999876 3455567888999999999998754 344456788999999999998
Q ss_pred cccCchhhh-hhccCCeeeCCCC
Q 003301 524 SGNIPTSME-KLLYLKDLNLSFN 545 (832)
Q Consensus 524 ~~~~p~~~~-~l~~L~~l~l~~N 545 (832)
++.-...+. .++.+....+..+
T Consensus 526 t~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 526 SMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CTTCTTGGGGCCTTEEEEEECCC
T ss_pred CHHHHHHHHHhCCCcEEEEecCc
Confidence 865444333 4566655555544
No 77
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=2.4e-30 Score=272.14 Aligned_cols=252 Identities=23% Similarity=0.205 Sum_probs=223.1
Q ss_pred cceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecC
Q 003301 321 LSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDG 400 (832)
Q Consensus 321 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 400 (832)
-+.++.+++.++. +|..+ .++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 3678899999884 45443 46899999999999988888999999999999999999988899999999999999999
Q ss_pred Cc-CCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCcc
Q 003301 401 NK-LSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDI 479 (832)
Q Consensus 401 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 479 (832)
|+ +....|..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|+.+++|+.|+|++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 98 88777899999999999999999999999999999999999999999999887788999999999999999999777
Q ss_pred CCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCCCCCCCC
Q 003301 480 PTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPRGGPFAN 559 (832)
Q Consensus 480 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~ 559 (832)
+..|.++++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++....+.+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 77899999999999999999999999999999999999999999998888899999999999999999998876322233
Q ss_pred cCCCcccCCCCCCCCc
Q 003301 560 FSNRSFMGNDLLCGLA 575 (832)
Q Consensus 560 ~~~~~~~~n~~~c~~~ 575 (832)
+.......+...|..|
T Consensus 250 l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHCCSEECCCBEEES
T ss_pred HHhcccccCccccCCc
Confidence 3333344455556544
No 78
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.3e-30 Score=286.56 Aligned_cols=180 Identities=24% Similarity=0.378 Sum_probs=156.7
Q ss_pred chHHHHHHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEe
Q 003301 650 SYKELLQATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCT 725 (832)
Q Consensus 650 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~ 725 (832)
..++.....++|++.+.||+|+||+||+|++. +++.||||++.... ....+.+.+|++++..++||||+++++++.
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 34444556789999999999999999999986 58999999997532 223456888999999999999999999999
Q ss_pred cCCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccc
Q 003301 726 NNDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGI 805 (832)
Q Consensus 726 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~ 805 (832)
+.+..|+||||+++|+|.+++.+.+..+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+
T Consensus 132 ~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGl 208 (412)
T 2vd5_A 132 DENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGS 208 (412)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred eCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechh
Confidence 999999999999999999999876557999999999999999999999 99999999999999999999999999999
Q ss_pred ccccCCCcccccccccccccccCCCCC
Q 003301 806 AKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 806 a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
|+.............+||+.|+|||++
T Consensus 209 a~~~~~~~~~~~~~~~Gt~~Y~APE~l 235 (412)
T 2vd5_A 209 CLKLRADGTVRSLVAVGTPDYLSPEIL 235 (412)
T ss_dssp CEECCTTSCEECSSCCSCGGGCCHHHH
T ss_pred heeccCCCccccceeccccCcCCHHHH
Confidence 988765444333446799999999963
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.2e-32 Score=316.84 Aligned_cols=408 Identities=14% Similarity=0.093 Sum_probs=208.6
Q ss_pred CccccccccCcEEEccCCcC---CCCCCCccc------------CcccccccccccccccccCCChhhhhcCCC-ceEEE
Q 003301 38 PQELGNLAELELVSLTNNFL---SGTIPSTIF------------NLSSLSTGMDFSNNSLTGSLPDDMCRRLPL-IKGLY 101 (832)
Q Consensus 38 p~~~~~l~~L~~L~l~~n~l---~~~~p~~l~------------~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~-L~~L~ 101 (832)
+..+..+++|++|+++++.. .+.+|...+ .+++| ++|+|++|.+++..+..+...++. |++|+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L-~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL-KSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC-CEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC-CeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 33455566666666665432 123333333 44555 666666666554444444322333 66666
Q ss_pred ccCCc-ccc-cCCCCccCCCCccEEECcCCccccc----CCCCCcCCCcCceEEecccccc----cccCccccCccccce
Q 003301 102 MSNNK-LTG-PIPNNIWQCKELIVISLAYNQFTER----IPRGLGNLTSLKTLYLGFNNLT----GEIPYEMGNLRNLEI 171 (832)
Q Consensus 102 l~~N~-l~~-~~p~~l~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~N~i~----~~~p~~~~~l~~L~~ 171 (832)
+++|. ++. .++.....+++|++|+|++|.+++. ++..+..+++|++|++++|.++ +.++..+.++++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 66665 221 1112223566677777777766543 2223345566777777777765 233444556677777
Q ss_pred ecccccccccccCcccccCCcccEEEecCCCCC-CCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCC
Q 003301 172 LGLQLNKLVGFVPTSIFNLSAMKTLALPSNALS-GSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGE 250 (832)
Q Consensus 172 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 250 (832)
|++++|.+.+ ++..+.++++|++|+++..... ...+....+..+++|+.|+++++... ..|..+..+++|++|+|++
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETT
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCC
Confidence 7777777665 4566666777777777643221 00111122345566777776665332 4455556666777777777
Q ss_pred CcCcccCC-ccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccC-----------CCCCCCCCCcccccc
Q 003301 251 NSFSGFIP-NTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSN-----------NPINGVLPSSIGNLS 318 (832)
Q Consensus 251 N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~-----------N~l~~~~~~~~~~~~ 318 (832)
|.+++... ..+..+++|++|+++ +.+... .+...+..+++|++|++++ |.+++.....+....
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~----~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETR-NVIGDR----GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH----HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHhCcCCCEEecc-CccCHH----HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 77654332 234566777777776 333220 1222234566777777772 344322111111111
Q ss_pred cccceEEeecCcccccccccccC-cCcccEEEee----cCccccc-----ccccccCCCCCceEEccCCc--cCCCCchh
Q 003301 319 LSLSRIFISNCSIRGTIPKEIGN-LINLRELGLW----GNELIGS-----IPITFGKLQNLQGLDLVNNK--LEGPIPNG 386 (832)
Q Consensus 319 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~ 386 (832)
++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++..+.++++|++|+|++|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 25666666555555544444443 5566666664 3444432 22234445566666665322 44333333
Q ss_pred hcC-CCCCcEEEecCCcCCC-CCcccCCCCCCCCeEeCCCCcCCCCC-CcccccCcccceeeecCCcccC
Q 003301 387 LCQ-LARLSVLYMDGNKLSG-PIPPCIGDLTSLRLLSLASNELNSVI-PSTFWNLKDILSLNFSSNFLNG 453 (832)
Q Consensus 387 ~~~-l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~ 453 (832)
+.. +++|++|++++|++++ .++..+..+++|+.|++++|.+++.. +..+..+++|++|++++|++++
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 322 4556666666665553 22333455555666666666554321 2222345555555555555553
No 80
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.2e-29 Score=269.64 Aligned_cols=224 Identities=22% Similarity=0.298 Sum_probs=172.7
Q ss_pred ccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEec
Q 003301 320 SLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMD 399 (832)
Q Consensus 320 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 399 (832)
.++.|++++|.++ .+|..+..+++|++|+|++|.+. .+|..++.+++|++|+|++|+++ .+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 3444444444444 34455555666666666666666 55666666666666666666666 556666666666666666
Q ss_pred CCcCCCCCcccCC---------CCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecc
Q 003301 400 GNKLSGPIPPCIG---------DLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDL 470 (832)
Q Consensus 400 ~N~l~~~~p~~~~---------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 470 (832)
+|++.+.+|..+. ++++|++|++++|+++ .+|..|..+++|++|++++|++++ +|..++.+++|++|+|
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEEC
Confidence 6666666666554 4888888888888888 567778888888889999998885 5667888999999999
Q ss_pred cCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCccc
Q 003301 471 SRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLE 548 (832)
Q Consensus 471 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 548 (832)
++|++.+.+|..|+++++|+.|+|++|++.+.+|..++.+++|+.|+|++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999998899999999999999999999999899999999999999999999999999999999999999998877665
No 81
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.96 E-value=2.1e-30 Score=284.71 Aligned_cols=176 Identities=24% Similarity=0.372 Sum_probs=153.6
Q ss_pred HHHHHHhcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecC
Q 003301 652 KELLQATNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNN 727 (832)
Q Consensus 652 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 727 (832)
.++....++|++.++||+|+||+||+|++.. ++.||+|++.... ....+.+.+|+++++.++||||+++++++.++
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~ 141 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD 141 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence 3444556899999999999999999999864 8899999997532 22234678899999999999999999999999
Q ss_pred CeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccc
Q 003301 728 DFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAK 807 (832)
Q Consensus 728 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~ 807 (832)
+..|+||||++||+|.++++.. .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+
T Consensus 142 ~~~~lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~ 216 (410)
T 3v8s_A 142 RYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCM 216 (410)
T ss_dssp SEEEEEECCCTTEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred CEEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeE
Confidence 9999999999999999999865 4899999999999999999999 9999999999999999999999999999998
Q ss_pred ccCCCcccccccccccccccCCCCC
Q 003301 808 LLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 808 ~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
.............+||+.|+|||++
T Consensus 217 ~~~~~~~~~~~~~~gt~~Y~APE~l 241 (410)
T 3v8s_A 217 KMNKEGMVRCDTAVGTPDYISPEVL 241 (410)
T ss_dssp ECCTTSEEECCSCCSCGGGCCHHHH
T ss_pred eeccCCcccccCCcCCccccCHHHh
Confidence 7765544344456899999999963
No 82
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=270.35 Aligned_cols=171 Identities=25% Similarity=0.419 Sum_probs=151.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.++|++.+.||+|+||+||+|.+. +++.||+|++........+.+.+|++++++++||||+++++++.+++..|+||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 467899999999999999999986 4899999998766666678899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcccc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMK 816 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~ 816 (832)
+++++|.++++.....+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||.|+.........
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 165 (310)
T 3s95_A 89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQP 165 (310)
T ss_dssp CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC------
T ss_pred cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceecccccccc
Confidence 9999999999986668999999999999999999999 9999999999999999999999999999998764433211
Q ss_pred -------------cccccccccccCCCC
Q 003301 817 -------------QTLTLATIGYMAPGL 831 (832)
Q Consensus 817 -------------~~~~~gt~~y~APE~ 831 (832)
....+||+.|+|||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 193 (310)
T 3s95_A 166 EGLRSLKKPDRKKRYTVVGNPYWMAPEM 193 (310)
T ss_dssp --------------CCCCSCGGGCCHHH
T ss_pred cccccccccccccccccCCCcceeCHHH
Confidence 113569999999996
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=6.4e-31 Score=279.98 Aligned_cols=246 Identities=22% Similarity=0.223 Sum_probs=189.9
Q ss_pred CCCCcEEeccCCCCCCCCCCcccccccccceEEeecCccc-cccccccc-------CcCcccEEEeecCcccccccccc-
Q 003301 293 CKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIR-GTIPKEIG-------NLINLRELGLWGNELIGSIPITF- 363 (832)
Q Consensus 293 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~- 363 (832)
.++|+.|++++|.+ .+|..+.. .++.|++++|.++ ..+|..+. ++++|++|+|++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 33444444444444 33333332 2555555555552 33444444 68889999999999988888776
Q ss_pred -cCCCCCceEEccCCccCCCCchhhcCC-----CCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCC--CCccc
Q 003301 364 -GKLQNLQGLDLVNNKLEGPIPNGLCQL-----ARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSV--IPSTF 435 (832)
Q Consensus 364 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~ 435 (832)
..+++|++|+|++|++++. |..+..+ ++|++|++++|++++..|..|+.+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8889999999999999876 7777776 8899999999999988888899999999999999998764 23333
Q ss_pred --ccCcccceeeecCCcccCC---CccccccccccceecccCcccCCccC-CccccccccceeecccccccccCCccccC
Q 003301 436 --WNLKDILSLNFSSNFLNGS---LPEDIGNLKVVVIIDLSRNNLSGDIP-TAIGGLMNLQDLSLRDNGLQGSIPKSIGG 509 (832)
Q Consensus 436 --~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 509 (832)
..+++|++|++++|++++. ....+..+++|++|+|++|++++..| ..+..+++|++|+|++|+|+ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 7889999999999998832 22344677899999999999998775 56777899999999999998 7887776
Q ss_pred CCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccc
Q 003301 510 LVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEG 549 (832)
Q Consensus 510 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 549 (832)
++|+.|||++|+|++. |. +..+++|++|+|++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999976 66 8899999999999999986
No 84
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.96 E-value=5.1e-30 Score=275.87 Aligned_cols=172 Identities=29% Similarity=0.476 Sum_probs=143.6
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
..++|++.+.||+|+||+||+|.+. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 3578999999999999999999875 58999999987554 233467889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
||+++|+|.+++...+ .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||+|........
T Consensus 88 E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~ 163 (347)
T 3zgw_A 88 EYCPGGELFDYIISQD-RLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNKD 163 (347)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC------
T ss_pred eCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCCCC
Confidence 9999999999997654 6999999999999999999999 99999999999999999999999999999987654443
Q ss_pred cccccccccccccCCCCC
Q 003301 815 MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~l 832 (832)
......+||+.|+|||++
T Consensus 164 ~~~~~~~gt~~y~aPE~~ 181 (347)
T 3zgw_A 164 YHLQTCCGSLAYAAPELI 181 (347)
T ss_dssp --------CGGGCCHHHH
T ss_pred ccccccCCccCccCHHHH
Confidence 334456799999999963
No 85
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.96 E-value=1.7e-29 Score=267.11 Aligned_cols=168 Identities=33% Similarity=0.455 Sum_probs=151.5
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.++|++.+.||+|+||+||+|.+. +++.||||++........+.+.+|+.++++++||||+++++++..++..|+||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 478999999999999999999874 5899999999876666667889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcccc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMK 816 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~ 816 (832)
+++|+|.+++... .+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+|||+|.........
T Consensus 99 ~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~- 172 (297)
T 3fxz_A 99 LAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK- 172 (297)
T ss_dssp CTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC-
T ss_pred CCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccc-
Confidence 9999999999875 4899999999999999999999 999999999999999999999999999999876544332
Q ss_pred cccccccccccCCCC
Q 003301 817 QTLTLATIGYMAPGL 831 (832)
Q Consensus 817 ~~~~~gt~~y~APE~ 831 (832)
....+||+.|+|||+
T Consensus 173 ~~~~~gt~~y~aPE~ 187 (297)
T 3fxz_A 173 RSTMVGTPYWMAPEV 187 (297)
T ss_dssp BCCCCSCGGGCCHHH
T ss_pred cCCccCCcCccChhh
Confidence 334579999999996
No 86
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.96 E-value=1e-29 Score=272.07 Aligned_cols=169 Identities=28% Similarity=0.452 Sum_probs=150.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..|+||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 578999999999999999999984 69999999997653 334567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
||+++|+|.+++...+ .+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+|||+|+......
T Consensus 94 e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~- 168 (328)
T 3fe3_A 94 EYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG- 168 (328)
T ss_dssp CCCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC-
T ss_pred ECCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC-
Confidence 9999999999997654 6899999999999999999999 9999999999999999999999999999998765433
Q ss_pred cccccccccccccCCCCC
Q 003301 815 MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~l 832 (832)
.....+||+.|+|||++
T Consensus 169 -~~~~~~gt~~y~aPE~~ 185 (328)
T 3fe3_A 169 -KLDAFCGAPPYAAPELF 185 (328)
T ss_dssp -GGGTTSSSGGGCCHHHH
T ss_pred -ccccccCCcceeCcccc
Confidence 23346799999999963
No 87
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.96 E-value=1.4e-29 Score=271.68 Aligned_cols=170 Identities=29% Similarity=0.373 Sum_probs=149.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||+||+|++. +++.||+|+++... ....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 468999999999999999999886 48999999997642 33456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++|+|.+++.+.+ .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+......
T Consensus 84 ~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 159 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG 159 (337)
T ss_dssp EECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCC
Confidence 99999999999997654 6899999999999999999999 9999999999999999999999999999998643332
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
. .....+||+.|+|||++
T Consensus 160 ~-~~~~~~gt~~y~aPE~~ 177 (337)
T 1o6l_A 160 A-TMKTFCGTPEYLAPEVL 177 (337)
T ss_dssp C-CBCCCEECGGGCCGGGG
T ss_pred C-cccccccChhhCChhhh
Confidence 2 22345799999999974
No 88
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=273.90 Aligned_cols=171 Identities=24% Similarity=0.360 Sum_probs=145.1
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKA 731 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 731 (832)
..++|++.+.||+|+||+||+|++.. ++.||||+++... ....+.+.+|.++++.+ +||||+++++++.+.+..|
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 35789999999999999999998864 8999999997542 33456788899999988 7999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCC
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~ 811 (832)
+||||+++|+|.+++.+.+ .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+....
T Consensus 101 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~ 176 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKSR-RFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC 176 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence 9999999999999997654 6999999999999999999999 99999999999999999999999999999986433
Q ss_pred CcccccccccccccccCCCCC
Q 003301 812 EESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 812 ~~~~~~~~~~gt~~y~APE~l 832 (832)
... .....+||+.|+|||++
T Consensus 177 ~~~-~~~~~~gt~~y~aPE~~ 196 (353)
T 3txo_A 177 NGV-TTATFCGTPDYIAPEIL 196 (353)
T ss_dssp ----------CCGGGCCHHHH
T ss_pred CCc-cccccCCCcCeEChhhc
Confidence 322 23345799999999963
No 89
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=8.2e-29 Score=265.16 Aligned_cols=225 Identities=20% Similarity=0.271 Sum_probs=149.9
Q ss_pred CCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEE
Q 003301 294 KNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLD 373 (832)
Q Consensus 294 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 373 (832)
++++.|+|++|.+. .+|..+..+. +|++|++++|.++ .+|..+..+++|++|+|++|++. .+|..|..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 34444444444444 3344444433 4555555555544 44555555555555555555555 4455555555555555
Q ss_pred ccCCccCCCCchhhc---------CCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCccccee
Q 003301 374 LVNNKLEGPIPNGLC---------QLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSL 444 (832)
Q Consensus 374 Ls~N~l~~~~~~~~~---------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 444 (832)
|++|++.+.+|..+. .+++|++|++++|+++ .+|..++.+++|++|++++|++++ +|..|..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 555555555555443 3677777777777777 666677777777777777777775 34457777777777
Q ss_pred eecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCccc
Q 003301 445 NFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLS 524 (832)
Q Consensus 445 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 524 (832)
++++|++.+.+|..++.+++|+.|+|++|++.+.+|..+.++++|+.|+|++|++.+.+|..++.+++|+.+++..|.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77777777777777888888888888888887788888888888888888888888888888888888888888777655
No 90
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.96 E-value=1.5e-29 Score=271.76 Aligned_cols=183 Identities=36% Similarity=0.611 Sum_probs=160.6
Q ss_pred ccccchHHHHHHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccch-hhHHHHHHHHHHHhcCCCCceeeeceEE
Q 003301 646 RRRFSYKELLQATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLE-GALKSFDVECEVLKSVRHRNLVKIISSC 724 (832)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~ 724 (832)
...+++.++....++|++.+.||+|+||.||+|++.+++.||||++..... .....+.+|+++++.++||||+++++++
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 96 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 96 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence 456889999999999999999999999999999987899999999875432 2234788999999999999999999999
Q ss_pred ecCCeeEEEEecCCCCCHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHhcCCCC---CeEecCCCCCCeEeCCCCcE
Q 003301 725 TNNDFKALVLEYMPNGSLEDYLYSNN---FSFDILQRLSVIIDVALALEYLHFGYSN---PVVHCDIKPSNVLLDKDMVA 798 (832)
Q Consensus 725 ~~~~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~---~ivH~Dlkp~NIl~~~~~~~ 798 (832)
.+.+..++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +. ||+||||||+||+++.++.+
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~ivH~Dlkp~Nil~~~~~~~ 173 (326)
T 3uim_A 97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLH---DHCDPKIIHRDVKAANILLDEEFEA 173 (326)
T ss_dssp CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHH---HSSSSCEECCCCSGGGEEECTTCCE
T ss_pred ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCeEeCCCchhhEEECCCCCE
Confidence 99999999999999999999998643 24899999999999999999999 77 99999999999999999999
Q ss_pred EEeccccccccCCCcccccccccccccccCCCC
Q 003301 799 HLSDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 799 kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
||+|||+|+..............||+.|+|||+
T Consensus 174 kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~ 206 (326)
T 3uim_A 174 VVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEY 206 (326)
T ss_dssp EECCCSSCEECCSSSSCEECCCCSCGGGCCHHH
T ss_pred EeccCccccccCcccccccccccCCcCccCHHH
Confidence 999999998876554444445569999999996
No 91
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.96 E-value=3.2e-29 Score=272.89 Aligned_cols=169 Identities=29% Similarity=0.436 Sum_probs=150.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+.. ++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 4679999999999999999998864 8899999997543 23456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+......
T Consensus 94 ~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 169 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQNV-HFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET 169 (384)
T ss_dssp ECCCTTEEHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC
Confidence 99999999999998654 6999999999999999999999 9999999999999999999999999999998765432
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
.....+||+.|+|||++
T Consensus 170 --~~~~~~gt~~Y~aPE~~ 186 (384)
T 4fr4_A 170 --QITTMAGTKPYMAPEMF 186 (384)
T ss_dssp --CBCCCCSCGGGCCGGGT
T ss_pred --ceeccCCCccccCCeee
Confidence 23346799999999975
No 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.5e-28 Score=276.06 Aligned_cols=251 Identities=22% Similarity=0.209 Sum_probs=202.7
Q ss_pred cceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCccc
Q 003301 267 LEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLR 346 (832)
Q Consensus 267 L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 346 (832)
...++.+++.++.+|..+ .++++.|+|++|.+++..+..|..+. +|++|+|++|++++..+..|.++++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI--------PSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCC--------CTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CcEEEECCCCcCccCCCC--------CCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCC
Confidence 345555666666554432 14667777777777666666666665 777777777777777777888888888
Q ss_pred EEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecC-CcCCCCCcccCCCCCCCCeEeCCCC
Q 003301 347 ELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDG-NKLSGPIPPCIGDLTSLRLLSLASN 425 (832)
Q Consensus 347 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N 425 (832)
+|+|++|++++..+..|..+++|++|+|++|+++...+..|..+++|++|++++ |.+....+..|.++++|+.|+|++|
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 888888888877777888888888888888888876667888888888888888 4555444557888999999999999
Q ss_pred cCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCc
Q 003301 426 ELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPK 505 (832)
Q Consensus 426 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 505 (832)
++++. | .+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+.
T Consensus 207 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 207 NIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp CCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 99875 3 478889999999999999988899999999999999999999988899999999999999999999988888
Q ss_pred cccCCCCCCeeccCCCcccccCc
Q 003301 506 SIGGLVSLESLDLSNNSLSGNIP 528 (832)
Q Consensus 506 ~~~~l~~L~~L~Ls~N~l~~~~p 528 (832)
.|..+++|+.|+|++|++.....
T Consensus 285 ~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp SSTTCTTCCEEECCSSCEECSTT
T ss_pred HhccccCCCEEEccCCCcCCCCC
Confidence 89999999999999999876443
No 93
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.96 E-value=9.4e-30 Score=272.57 Aligned_cols=182 Identities=37% Similarity=0.617 Sum_probs=157.1
Q ss_pred cccchHHHHHHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEec
Q 003301 647 RRFSYKELLQATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTN 726 (832)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 726 (832)
.++.+.++....++|++.+.||+|+||.||+|++.+++.||||++........+.+.+|+++++.++||||+++++++.+
T Consensus 27 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 106 (321)
T 2qkw_B 27 YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE 106 (321)
T ss_dssp ---CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred eeecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence 34555566667899999999999999999999988899999999877666666889999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecc
Q 003301 727 NDFKALVLEYMPNGSLEDYLYSNN---FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDF 803 (832)
Q Consensus 727 ~~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DF 803 (832)
.+..|+||||+++|+|.+++.... ..+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+||
T Consensus 107 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Df 183 (321)
T 2qkw_B 107 RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDF 183 (321)
T ss_dssp TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCC
T ss_pred CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeec
Confidence 999999999999999999997543 24899999999999999999999 999999999999999999999999999
Q ss_pred ccccccCCCcc-cccccccccccccCCCC
Q 003301 804 GIAKLLSGEES-MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 804 g~a~~~~~~~~-~~~~~~~gt~~y~APE~ 831 (832)
|+++....... .......||+.|+|||+
T Consensus 184 g~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 212 (321)
T 2qkw_B 184 GISKKGTELDQTHLSTVVKGTLGYIDPEY 212 (321)
T ss_dssp TTCEECSSSSCCCCBCCCEEETTTCCHHH
T ss_pred ccccccccccccccccccCCCccccCHHH
Confidence 99987543222 12233469999999996
No 94
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=273.81 Aligned_cols=250 Identities=24% Similarity=0.235 Sum_probs=205.1
Q ss_pred cceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCccc
Q 003301 267 LEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLR 346 (832)
Q Consensus 267 L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 346 (832)
...++.+++.++.+|..+ .++++.|+|++|++.+..+..|..+. +|++|+|++|.+++..+..|.++++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI--------STNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCC--------CTTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCC--------CCCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCC
Confidence 445666666666655432 15667777777777766666666665 777777777777777778888888999
Q ss_pred EEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCC-cCCCCCcccCCCCCCCCeEeCCCC
Q 003301 347 ELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGN-KLSGPIPPCIGDLTSLRLLSLASN 425 (832)
Q Consensus 347 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N 425 (832)
+|+|++|++++..+..|..+++|++|+|++|+++...+..|..+++|++|++++| .+....+..|.++++|+.|++++|
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 9999999888777778888999999999999988777778888899999999884 455444557888999999999999
Q ss_pred cCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCc
Q 003301 426 ELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPK 505 (832)
Q Consensus 426 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 505 (832)
.++.+ | .+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|+|++..+.
T Consensus 196 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 196 NLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp CCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred cCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 99865 3 478889999999999999988889999999999999999999988899999999999999999999988888
Q ss_pred cccCCCCCCeeccCCCcccccC
Q 003301 506 SIGGLVSLESLDLSNNSLSGNI 527 (832)
Q Consensus 506 ~~~~l~~L~~L~Ls~N~l~~~~ 527 (832)
.|..+++|+.|+|++|++....
T Consensus 274 ~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTSSCTTCCEEECCSSCEECSS
T ss_pred HhccccCCCEEEcCCCCccCCC
Confidence 8999999999999999987543
No 95
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.96 E-value=2.5e-29 Score=265.42 Aligned_cols=170 Identities=28% Similarity=0.479 Sum_probs=144.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+++..|+|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 468999999999999999999875 58999999986432 33456889999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++++|.+++...+ .+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+|||+|+......
T Consensus 90 ~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 165 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS 165 (294)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred EeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence 99999999999998654 6899999999999999999999 9999999999999999999999999999998765444
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
........||+.|+|||+
T Consensus 166 ~~~~~~~~gt~~y~aPE~ 183 (294)
T 4eqm_A 166 LTQTNHVLGTVQYFSPEQ 183 (294)
T ss_dssp ---------CCSSCCHHH
T ss_pred ccccCccccCccccCHhH
Confidence 333444579999999996
No 96
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.96 E-value=6e-29 Score=265.91 Aligned_cols=179 Identities=26% Similarity=0.339 Sum_probs=156.1
Q ss_pred cccchHHHHHHhcC----------CCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCC
Q 003301 647 RRFSYKELLQATNQ----------FNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHR 715 (832)
Q Consensus 647 ~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ 715 (832)
..++++++..+.+. |+..+.||+|+||.||+|++. +|+.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 45677777666653 677789999999999999986 5999999999876666667889999999999999
Q ss_pred ceeeeceEEecCCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC
Q 003301 716 NLVKIISSCTNNDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKD 795 (832)
Q Consensus 716 niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~ 795 (832)
||+++++++...+..|+||||+++++|.+++... .+++..+..++.|++.|++||| +.||+||||||+||+++.+
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~ 177 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLD 177 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTT
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCC
Confidence 9999999999999999999999999999998754 5899999999999999999999 9999999999999999999
Q ss_pred CcEEEeccccccccCCCcccccccccccccccCCCC
Q 003301 796 MVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 796 ~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+.+||+|||+++........ .....||+.|+|||+
T Consensus 178 ~~~kl~Dfg~~~~~~~~~~~-~~~~~gt~~y~aPE~ 212 (321)
T 2c30_A 178 GRVKLSDFGFCAQISKDVPK-RKSLVGTPYWMAPEV 212 (321)
T ss_dssp CCEEECCCTTCEECCSSSCC-BCCCCSCGGGCCHHH
T ss_pred CcEEEeeeeeeeecccCccc-cccccCCccccCHhh
Confidence 99999999999876543322 234579999999996
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.3e-30 Score=275.76 Aligned_cols=252 Identities=19% Similarity=0.221 Sum_probs=198.2
Q ss_pred cccccccCcEEEccCCcCCCCCCCcccCcccccccccccccccc-cCCChhhh------hcCCCceEEEccCCcccccCC
Q 003301 40 ELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLT-GSLPDDMC------RRLPLIKGLYMSNNKLTGPIP 112 (832)
Q Consensus 40 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~-~~lp~~~~------~~l~~L~~L~l~~N~l~~~~p 112 (832)
.++..++|++|++++|.+ .+|..+... + +.|++++|.++ +.+|.... .++++|++|++++|++++.+|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L-~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--I-KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--H-HHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--H-hhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 456677888888888888 677766554 4 88888888884 45666553 157889999999999988888
Q ss_pred CCc--cCCCCccEEECcCCcccccCCCCCcCC-----CcCceEEecccccccccCccccCccccceecccccccccc--c
Q 003301 113 NNI--WQCKELIVISLAYNQFTERIPRGLGNL-----TSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLNKLVGF--V 183 (832)
Q Consensus 113 ~~l--~~l~~L~~L~Ls~n~i~~~~p~~~~~l-----~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~--~ 183 (832)
..+ ..+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..|+++++|++|++++|++.+. .
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 876 8888999999999999876 7777777 8899999999999877778888999999999999987654 2
Q ss_pred Cccc--ccCCcccEEEecCCCCCC--CCCccccccCCCCccEEEccCCccccccC-CcccCCCCccEEEcCCCcCcccCC
Q 003301 184 PTSI--FNLSAMKTLALPSNALSG--SLPSSIDLVRLPNLEIISLAGNNFSGIIP-SFIFNASKLSVLELGENSFSGFIP 258 (832)
Q Consensus 184 ~~~~--~~l~~L~~L~L~~n~l~~--~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~ 258 (832)
+..+ .++++|++|+|++|.+++ .++..+ +..+++|++|+|++|++++..| ..+..+++|++|+|++|+|+ .+|
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSAL-AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH-HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHH-HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 3334 788999999999998873 122222 3467899999999999988775 45667889999999999998 456
Q ss_pred ccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCC
Q 003301 259 NTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPING 308 (832)
Q Consensus 259 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 308 (832)
..+. ++|++|++++|+|++++ . +..+++|++|++++|++++
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~p------~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRNP------S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSCC------C-TTTSCEEEEEECTTCTTTC
T ss_pred hhcc--CCceEEECCCCCCCCCh------h-HhhCCCCCEEeccCCCCCC
Confidence 6555 88999999999998742 2 6788999999999999875
No 98
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.96 E-value=2.2e-29 Score=275.06 Aligned_cols=170 Identities=24% Similarity=0.333 Sum_probs=147.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 732 (832)
.++|++.++||+|+||+||+|++.. ++.||+|+++... ....+.+.+|..++.++ +||||+++++++.+++..|+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 4689999999999999999999864 7889999998653 22335678899999877 89999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+++|+|.+++.+.+ .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+.....
T Consensus 131 V~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~ 206 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 206 (396)
T ss_dssp EEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred EEEcCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeecccC
Confidence 999999999999998654 6999999999999999999999 999999999999999999999999999999864332
Q ss_pred cccccccccccccccCCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~l 832 (832)
.. .....+||+.|+|||++
T Consensus 207 ~~-~~~~~~gt~~Y~aPE~l 225 (396)
T 4dc2_A 207 GD-TTSTFCGTPNYIAPEIL 225 (396)
T ss_dssp TC-CBCCCCBCGGGCCHHHH
T ss_pred CC-ccccccCCcccCCchhh
Confidence 22 23346799999999963
No 99
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.96 E-value=5.4e-29 Score=265.14 Aligned_cols=167 Identities=28% Similarity=0.411 Sum_probs=148.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||+||+|+.. +|+.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 467999999999999999999886 58999999997543 23456788899999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++|+|.+++.... .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+.....
T Consensus 85 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~- 159 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV- 159 (318)
T ss_dssp ECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-
T ss_pred EeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCc-
Confidence 99999999999998754 6899999999999999999999 999999999999999999999999999999876432
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
....+||+.|+|||++
T Consensus 160 ---~~~~~gt~~y~aPE~~ 175 (318)
T 1fot_A 160 ---TYTLCGTPDYIAPEVV 175 (318)
T ss_dssp ---BCCCCSCTTTCCHHHH
T ss_pred ---cccccCCccccCHhHh
Confidence 2235799999999963
No 100
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.96 E-value=3.4e-29 Score=269.44 Aligned_cols=172 Identities=27% Similarity=0.423 Sum_probs=148.9
Q ss_pred HHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCee
Q 003301 656 QATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 656 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~ 730 (832)
...++|++.+.||+|+||.||+|++. +++.||||+++... ....+.+..|.++++.+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 35689999999999999999999986 48999999997643 23456778899999876 899999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
|+||||+++|+|.+++...+ .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+...
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 169 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM 169 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhcc
Confidence 99999999999999998654 6899999999999999999999 9999999999999999999999999999998653
Q ss_pred CCcccccccccccccccCCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~l 832 (832)
.... .....+||+.|+|||++
T Consensus 170 ~~~~-~~~~~~gt~~y~aPE~~ 190 (345)
T 1xjd_A 170 LGDA-KTNTFCGTPDYIAPEIL 190 (345)
T ss_dssp CTTC-CBCCCCSCGGGCCHHHH
T ss_pred cCCC-cccCCCCCcccCChhhh
Confidence 3222 23346799999999963
No 101
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.96 E-value=2.7e-29 Score=261.80 Aligned_cols=170 Identities=28% Similarity=0.456 Sum_probs=151.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEecC
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEYM 737 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 737 (832)
.++|++.+.||+|+||.||+|.+.+++.||+|++..... ..+.+.+|++++++++||||+++++++.+++..|+||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 467999999999999999999998899999999975543 3367899999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccccc
Q 003301 738 PNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMKQ 817 (832)
Q Consensus 738 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~~ 817 (832)
++++|.+++......+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.|+..........
T Consensus 88 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~ 164 (269)
T 4hcu_A 88 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS 164 (269)
T ss_dssp TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHST
T ss_pred CCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccccccc
Confidence 999999999877667999999999999999999999 99999999999999999999999999999987655443333
Q ss_pred ccccccccccCCCC
Q 003301 818 TLTLATIGYMAPGL 831 (832)
Q Consensus 818 ~~~~gt~~y~APE~ 831 (832)
....+|+.|+|||+
T Consensus 165 ~~~~~~~~y~aPE~ 178 (269)
T 4hcu_A 165 TGTKFPVKWASPEV 178 (269)
T ss_dssp TSTTCCGGGCCHHH
T ss_pred cCcccccccCCHHH
Confidence 44567889999996
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=3.1e-30 Score=275.40 Aligned_cols=268 Identities=22% Similarity=0.231 Sum_probs=203.0
Q ss_pred CccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCccccccccc
Q 003301 242 KLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSL 321 (832)
Q Consensus 242 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 321 (832)
+++.++++.+.+.......+..+++|++|+|++|.++.++ +..|..+++|++|+|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~-------------- 71 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS-----AADLAPFTKLELLNLSSNVLY-------------- 71 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCC-----HHHHTTCTTCCEEECTTSCCE--------------
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCC-----HHHhhCCCcCCEEECCCCcCC--------------
Confidence 3455666677666555555556666777777777766532 224566666666666666654
Q ss_pred ceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCC
Q 003301 322 SRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGN 401 (832)
Q Consensus 322 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 401 (832)
+..+ +..+++|++|++++|++++..+ .++|++|++++|++++..+.. +++|++|++++|
T Consensus 72 -----------~~~~--~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N 130 (317)
T 3o53_A 72 -----------ETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANN 130 (317)
T ss_dssp -----------EEEE--ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSS
T ss_pred -----------cchh--hhhcCCCCEEECcCCccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCC
Confidence 2222 6677788888888888775432 378888888888887654433 567888888888
Q ss_pred cCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccc-cCcccceeeecCCcccCCCccccccccccceecccCcccCCccC
Q 003301 402 KLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFW-NLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIP 480 (832)
Q Consensus 402 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 480 (832)
++++..+..|..+++|++|++++|.+++..+..+. .+++|++|++++|++++. + ....+++|++|+|++|++++ +|
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-EC
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-ch
Confidence 88877777888888888888888888887777764 688899999999988864 3 23458899999999999985 55
Q ss_pred CccccccccceeecccccccccCCccccCCCCCCeeccCCCccc-ccCchhhhhhccCCeeeCC-CCcccccCCC
Q 003301 481 TAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLS-GNIPTSMEKLLYLKDLNLS-FNKLEGEIPR 553 (832)
Q Consensus 481 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~l~-~N~l~~~~p~ 553 (832)
..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 56999999999999999999 57888999999999999999999 7888999999999999998 4567776654
No 103
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.96 E-value=5.7e-29 Score=268.22 Aligned_cols=170 Identities=24% Similarity=0.334 Sum_probs=148.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 732 (832)
.++|++.+.||+|+||.||+|++.. ++.||+|++.... ....+.+.+|+.+++++ +||||+++++++.+.+..|+
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 3679999999999999999999864 8899999998653 23446788899999987 89999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+++|+|.+++...+ .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+.....
T Consensus 88 v~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~ 163 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 163 (345)
T ss_dssp EECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCT
T ss_pred EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccCC
Confidence 999999999999997654 6899999999999999999999 999999999999999999999999999999864332
Q ss_pred cccccccccccccccCCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~l 832 (832)
.. .....+||+.|+|||++
T Consensus 164 ~~-~~~~~~gt~~y~aPE~~ 182 (345)
T 3a8x_A 164 GD-TTSTFCGTPNYIAPEIL 182 (345)
T ss_dssp TC-CBCCCCSCGGGCCHHHH
T ss_pred CC-cccccCCCccccCcccc
Confidence 22 23345799999999963
No 104
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.96 E-value=8.8e-29 Score=267.94 Aligned_cols=169 Identities=25% Similarity=0.398 Sum_probs=149.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchh------hHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEG------ALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
.++|++.+.||+|+||.||+|.+. +|+.||+|++...... ..+.+.+|+.++++++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 478999999999999999999986 4899999999765321 346789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC----cEEEeccccc
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM----VAHLSDFGIA 806 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~----~~kl~DFg~a 806 (832)
|+||||+++|+|.+++.... .+++..+..++.|++.|++||| +.||+||||||+||+++.++ .+||+|||+|
T Consensus 91 ~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a 166 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (361)
T ss_dssp EEEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence 99999999999999997654 6999999999999999999999 99999999999999998777 7999999999
Q ss_pred cccCCCcccccccccccccccCCCCC
Q 003301 807 KLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 807 ~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
+....... ....+||+.|+|||++
T Consensus 167 ~~~~~~~~--~~~~~gt~~y~aPE~~ 190 (361)
T 2yab_A 167 HEIEDGVE--FKNIFGTPEFVAPEIV 190 (361)
T ss_dssp EECCTTCC--CCCCCSCGGGCCHHHH
T ss_pred eEcCCCCc--cccCCCCccEECchHH
Confidence 87654332 2335799999999963
No 105
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.96 E-value=7.7e-29 Score=264.81 Aligned_cols=168 Identities=21% Similarity=0.353 Sum_probs=149.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.++|++.+.||+|+||.||+|.+.. ++.||+|++.... .....+.+|+++++.++||||+++++++.+.+..|+||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 4789999999999999999998864 8899999987543 3346788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC--CCcEEEeccccccccCCCcc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK--DMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~--~~~~kl~DFg~a~~~~~~~~ 814 (832)
+++++|.+++......+++..+..++.|++.|++||| +.||+||||||+||+++. ++.+||+|||+|+.......
T Consensus 83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~ 159 (321)
T 1tki_A 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN 159 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCc
Confidence 9999999999876667999999999999999999999 999999999999999987 78999999999988754432
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
.....||+.|+|||+
T Consensus 160 --~~~~~gt~~y~aPE~ 174 (321)
T 1tki_A 160 --FRLLFTAPEYYAPEV 174 (321)
T ss_dssp --EEEEESCGGGSCHHH
T ss_pred --cccccCChhhcCcHH
Confidence 234579999999996
No 106
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.96 E-value=5.9e-29 Score=268.42 Aligned_cols=171 Identities=23% Similarity=0.314 Sum_probs=149.1
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKA 731 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 731 (832)
..++|++.+.||+|+||.||+|++.. ++.||+|++.... ....+.+.+|..+++.+ +||+|+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 45789999999999999999999875 7899999997643 23456788899999988 7999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCC
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~ 811 (832)
+||||++||+|.+++...+ .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+....
T Consensus 98 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 173 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 173 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence 9999999999999998654 6999999999999999999999 99999999999999999999999999999986433
Q ss_pred CcccccccccccccccCCCCC
Q 003301 812 EESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 812 ~~~~~~~~~~gt~~y~APE~l 832 (832)
... .....+||+.|+|||++
T Consensus 174 ~~~-~~~~~~gt~~y~aPE~~ 193 (353)
T 2i0e_A 174 DGV-TTKTFCGTPDYIAPEII 193 (353)
T ss_dssp TTC-CBCCCCSCGGGCCHHHH
T ss_pred CCc-ccccccCCccccChhhh
Confidence 222 23345799999999963
No 107
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.96 E-value=6e-29 Score=258.99 Aligned_cols=170 Identities=26% Similarity=0.441 Sum_probs=151.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEecC
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEYM 737 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 737 (832)
.++|++.+.||+|+||.||+|++.++..||+|++..... ..+.+.+|++++++++||||+++++++.+++..|+||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 468999999999999999999998888999999975543 3467899999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccccc
Q 003301 738 PNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMKQ 817 (832)
Q Consensus 738 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~~ 817 (832)
++++|.+++......+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.|...........
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~ 162 (268)
T 3sxs_A 86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSS 162 (268)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEEC
T ss_pred CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcc
Confidence 999999999876656999999999999999999999 99999999999999999999999999999987755544333
Q ss_pred ccccccccccCCCC
Q 003301 818 TLTLATIGYMAPGL 831 (832)
Q Consensus 818 ~~~~gt~~y~APE~ 831 (832)
....+|+.|+|||+
T Consensus 163 ~~~~~~~~y~aPE~ 176 (268)
T 3sxs_A 163 VGTKFPVKWSAPEV 176 (268)
T ss_dssp CSCCCCGGGCCHHH
T ss_pred cCCCcCcccCCHHH
Confidence 44557788999996
No 108
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=7.5e-30 Score=272.39 Aligned_cols=266 Identities=23% Similarity=0.225 Sum_probs=137.7
Q ss_pred cEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEE
Q 003301 220 EIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLL 299 (832)
Q Consensus 220 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L 299 (832)
+..+++.+.+.......+..+++|++|+|++|.+++..|..|..+++|++|+|++|.++..+ .+..+++|++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L 85 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLRTL 85 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------EETTCTTCCEE
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------hhhhcCCCCEE
Confidence 33444445444444444444555666666666666555555666666666666666654311 14555666666
Q ss_pred eccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCcc
Q 003301 300 DLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKL 379 (832)
Q Consensus 300 ~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 379 (832)
++++|++++..+ . .+|++|++++|++++..+.. +++|++|++++|++++..+..|..+++|++|+|++|++
T Consensus 86 ~Ls~n~l~~l~~-----~-~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 86 DLNNNYVQELLV-----G-PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp ECCSSEEEEEEE-----C-TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred ECcCCccccccC-----C-CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 666665542211 1 14444444444444333322 34566666666666655555666666666666666666
Q ss_pred CCCCchhhc-CCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccc
Q 003301 380 EGPIPNGLC-QLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPED 458 (832)
Q Consensus 380 ~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 458 (832)
++..+..+. .+++|++|++++|++++. +. ...+++|+.|+|++|+++++ |..
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-------------------------~~~ 209 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-------------------------GPE 209 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-------------------------CGG
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-------------------------hhh
Confidence 654444442 455555555555555533 21 22245555555555555432 223
Q ss_pred cccccccceecccCcccCCccCCccccccccceeeccccccc-ccCCccccCCCCCCeeccC-CCcccccCch
Q 003301 459 IGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQ-GSIPKSIGGLVSLESLDLS-NNSLSGNIPT 529 (832)
Q Consensus 459 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~ 529 (832)
+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ +.+|..++.+++|+.|+++ .+.++|..|.
T Consensus 210 ~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 444555555555555554 34445555555555555555555 4455555555555555555 3344444443
No 109
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.95 E-value=7.7e-29 Score=263.85 Aligned_cols=169 Identities=27% Similarity=0.410 Sum_probs=147.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
.++|++.+.||+|+||+||+|++.+++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..|+|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 47899999999999999999999889999999987543 2234678899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccc
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESM 815 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~ 815 (832)
|++ +++.+++......+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+.......
T Consensus 100 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~- 174 (311)
T 3niz_A 100 FME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR- 174 (311)
T ss_dssp CCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC-
T ss_pred CCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcc-
Confidence 996 5899988877767999999999999999999999 99999999999999999999999999999987643322
Q ss_pred ccccccccccccCCCC
Q 003301 816 KQTLTLATIGYMAPGL 831 (832)
Q Consensus 816 ~~~~~~gt~~y~APE~ 831 (832)
......||+.|+|||+
T Consensus 175 ~~~~~~~t~~y~aPE~ 190 (311)
T 3niz_A 175 SYTHEVVTLWYRAPDV 190 (311)
T ss_dssp ---CCCCCCTTCCHHH
T ss_pred cccCCcccCCcCCHHH
Confidence 2233568999999996
No 110
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.95 E-value=8.9e-29 Score=267.07 Aligned_cols=167 Identities=28% Similarity=0.383 Sum_probs=149.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|++. +|+.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 468999999999999999999986 58999999997543 23456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++|+|.+++.+.+ .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+......
T Consensus 120 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~ 195 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195 (350)
T ss_dssp EECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB
T ss_pred EcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCCc
Confidence 99999999999998654 6899999999999999999999 9999999999999999999999999999998764332
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
...+||+.|+|||++
T Consensus 196 ----~~~~gt~~y~aPE~~ 210 (350)
T 1rdq_E 196 ----WTLCGTPEALAPEII 210 (350)
T ss_dssp ----CCCEECGGGCCHHHH
T ss_pred ----ccccCCccccCHHHh
Confidence 235799999999963
No 111
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.3e-28 Score=263.87 Aligned_cols=168 Identities=26% Similarity=0.451 Sum_probs=148.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 478999999999999999999985 58999999997543 22345788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+ +|+|.+++...+ .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||+|.......
T Consensus 88 ~E~~-~g~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~ 162 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKK-RMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN 162 (336)
T ss_dssp ECCC-CEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB
T ss_pred EECC-CCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCc
Confidence 9999 789999887654 6999999999999999999999 9999999999999999999999999999998765443
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
. ....+||+.|+|||++
T Consensus 163 ~--~~~~~gt~~y~aPE~~ 179 (336)
T 3h4j_B 163 F--LKTSCGSPNYAAPEVI 179 (336)
T ss_dssp T--TCCCTTSTTTSCGGGS
T ss_pred c--cccccCCcCcCCHHHH
Confidence 2 2335799999999975
No 112
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=264.10 Aligned_cols=172 Identities=28% Similarity=0.493 Sum_probs=146.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEec----CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL----DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
.++|++.+.||+|+||.||+|.+. .+..||||++.... ....+.+.+|++++++++||||+++++++.+.+..|+
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 467889999999999999999885 34569999997653 3445788999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+++++|.++++.....+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+.....
T Consensus 128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 204 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD 204 (325)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC--
T ss_pred EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccC
Confidence 99999999999999877667999999999999999999999 999999999999999999999999999999876543
Q ss_pred ccc--ccccccccccccCCCCC
Q 003301 813 ESM--KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 813 ~~~--~~~~~~gt~~y~APE~l 832 (832)
... ......+|+.|+|||++
T Consensus 205 ~~~~~~~~~~~~t~~y~aPE~~ 226 (325)
T 3kul_A 205 PDAAYTTTGGKIPIRWTAPEAI 226 (325)
T ss_dssp --CCEECC---CCGGGSCHHHH
T ss_pred ccceeeccCCCCcccccCHhHh
Confidence 322 12223467889999963
No 113
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.95 E-value=1.8e-28 Score=267.96 Aligned_cols=170 Identities=21% Similarity=0.381 Sum_probs=151.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.++|++.+.||+|+||.||+|.+. +++.||+|++..........+.+|++++++++||||+++++++.+.+..|+||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 468999999999999999999886 4889999999876555567889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC--CCcEEEeccccccccCCCcc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK--DMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~--~~~~kl~DFg~a~~~~~~~~ 814 (832)
+++|+|.+++......+++..+..++.|++.||+||| +.||+||||||+||+++. ++.+||+|||+|+.......
T Consensus 130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~ 206 (387)
T 1kob_A 130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI 206 (387)
T ss_dssp CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCCcc
Confidence 9999999999876667999999999999999999999 999999999999999974 47899999999988754432
Q ss_pred cccccccccccccCCCCC
Q 003301 815 MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~l 832 (832)
.....||+.|+|||++
T Consensus 207 --~~~~~gt~~y~aPE~~ 222 (387)
T 1kob_A 207 --VKVTTATAEFAAPEIV 222 (387)
T ss_dssp --EEEECSSGGGCCHHHH
T ss_pred --eeeeccCCCccCchhc
Confidence 2235699999999963
No 114
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=3.2e-27 Score=271.82 Aligned_cols=270 Identities=24% Similarity=0.267 Sum_probs=183.2
Q ss_pred CcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCcccccee
Q 003301 191 SAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWL 270 (832)
Q Consensus 191 ~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 270 (832)
.+++.|++++|.++ .+|..+ .++|++|+|++|+++.+.+ .+++|++|+|++|+|+.+ |. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l----~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCL----PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCC----CTTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhh----CCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEE
Confidence 35788888888887 667654 1677777887777775433 356777777777777743 32 55677777
Q ss_pred ecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEe
Q 003301 271 RLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGL 350 (832)
Q Consensus 271 ~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 350 (832)
++++|.++.++. .+++|+.|++++|++++ +|. . +++|++|++
T Consensus 107 ~Ls~N~l~~l~~---------~l~~L~~L~L~~N~l~~-lp~-------------------------~---l~~L~~L~L 148 (622)
T 3g06_A 107 SIFSNPLTHLPA---------LPSGLCKLWIFGNQLTS-LPV-------------------------L---PPGLQELSV 148 (622)
T ss_dssp EECSCCCCCCCC---------CCTTCCEEECCSSCCSC-CCC-------------------------C---CTTCCEEEC
T ss_pred ECcCCcCCCCCC---------CCCCcCEEECCCCCCCc-CCC-------------------------C---CCCCCEEEC
Confidence 777777665432 23556666666666552 222 1 245666666
Q ss_pred ecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCC
Q 003301 351 WGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSV 430 (832)
Q Consensus 351 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 430 (832)
++|++++. |. .+++|+.|++++|++++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++.+
T Consensus 149 s~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 149 SDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL 216 (622)
T ss_dssp CSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC
T ss_pred cCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccccc
Confidence 66666542 22 23456667777777663 44 345667777777777764 3332 35677777777777653
Q ss_pred CCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCC
Q 003301 431 IPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGL 510 (832)
Q Consensus 431 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 510 (832)
. . .+++|+.|++++|+|++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..|+.+
T Consensus 217 ~-~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 217 P-A---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp C-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred C-C---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 3 2 23677788888888775 44 45577888888888888 4555 5678899999999998 678889999
Q ss_pred CCCCeeccCCCcccccCchhhhhhcc
Q 003301 511 VSLESLDLSNNSLSGNIPTSMEKLLY 536 (832)
Q Consensus 511 ~~L~~L~Ls~N~l~~~~p~~~~~l~~ 536 (832)
++|+.|+|++|++++.+|..+..++.
T Consensus 284 ~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp CTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred cccCEEEecCCCCCCcCHHHHHhccc
Confidence 99999999999999988888887763
No 115
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=9.7e-28 Score=276.10 Aligned_cols=269 Identities=25% Similarity=0.269 Sum_probs=217.8
Q ss_pred cccCeEeccCCccccCCCccccccccCcEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEE
Q 003301 21 TMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGL 100 (832)
Q Consensus 21 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L 100 (832)
..+++|++++|+++ .+|..+. ++|++|+|++|.++ .+|. .+++| ++|||++|+++ .+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L-~~L~Ls~N~l~-~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPEL-RTLEVSGNQLT-SLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTC-CEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCC-CEEEcCCCcCC-cCCC----CCCCCCEE
Confidence 35889999999998 8888776 78999999999998 7777 45677 88999999998 7887 57889999
Q ss_pred EccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceecccccccc
Q 003301 101 YMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLNKLV 180 (832)
Q Consensus 101 ~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~l~ 180 (832)
++++|++++ +|. .+++|+.|++++|++++ +|.. +++|++|+|++|++++ +|. .+++|+.|++++|+++
T Consensus 107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred ECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC
Confidence 999999984 555 56889999999999985 5653 4889999999999984 554 3467888999999998
Q ss_pred cccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCcc
Q 003301 181 GFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNT 260 (832)
Q Consensus 181 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 260 (832)
+ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++.+.. .+++|++|+|++|.|+++ |
T Consensus 175 ~-l~---~~~~~L~~L~Ls~N~l~~-l~~~-----~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~l-p-- 237 (622)
T 3g06_A 175 S-LP---MLPSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSL-P-- 237 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCC-C--
T ss_pred C-Cc---ccCCCCcEEECCCCCCCC-CCCc-----cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcC-C--
Confidence 6 44 456889999999999984 5542 4789999999999986543 257899999999999864 4
Q ss_pred ccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCccccccccccc
Q 003301 261 LGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIG 340 (832)
Q Consensus 261 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 340 (832)
..+++|++|++++|.|+.++. .+++|+.|+|++|+++ .+|..+..+. +|+.|++++|.+++..|..+.
T Consensus 238 -~~l~~L~~L~Ls~N~L~~lp~---------~~~~L~~L~Ls~N~L~-~lp~~l~~l~-~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTSLPM---------LPSGLLSLSVYRNQLT-RLPESLIHLS-SETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCC-SCCGGGGGSC-TTCEEECCSCCCCHHHHHHHH
T ss_pred -CCCCcCcEEECCCCCCCcCCc---------ccccCcEEeCCCCCCC-cCCHHHhhcc-ccCEEEecCCCCCCcCHHHHH
Confidence 456889999999999987553 4578999999999998 6788888877 899999999999988888777
Q ss_pred CcC
Q 003301 341 NLI 343 (832)
Q Consensus 341 ~l~ 343 (832)
.++
T Consensus 306 ~L~ 308 (622)
T 3g06_A 306 EIT 308 (622)
T ss_dssp HHH
T ss_pred hcc
Confidence 665
No 116
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.95 E-value=2e-28 Score=258.52 Aligned_cols=168 Identities=27% Similarity=0.403 Sum_probs=146.9
Q ss_pred cCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
++|++.+.||+|+||+||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..|+|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57999999999999999999986 48999999997543 2334678899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccc
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESM 815 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~ 815 (832)
|++ +++.+++......+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+|||.|+.......
T Consensus 82 ~~~-~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 156 (292)
T 3o0g_A 82 FCD-QDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR- 156 (292)
T ss_dssp CCS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCS-
T ss_pred cCC-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccc-
Confidence 996 5777777766667999999999999999999999 99999999999999999999999999999987643332
Q ss_pred ccccccccccccCCCC
Q 003301 816 KQTLTLATIGYMAPGL 831 (832)
Q Consensus 816 ~~~~~~gt~~y~APE~ 831 (832)
......||+.|+|||+
T Consensus 157 ~~~~~~~t~~y~aPE~ 172 (292)
T 3o0g_A 157 CYSAEVVTLWYRPPDV 172 (292)
T ss_dssp CCCSCCSCGGGCCHHH
T ss_pred cccCCccccCCcChHH
Confidence 2233568999999996
No 117
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.95 E-value=1.8e-28 Score=264.02 Aligned_cols=172 Identities=26% Similarity=0.416 Sum_probs=143.8
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCC------
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNND------ 728 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 728 (832)
..++|++.+.||+|+||.||+|++. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 3568999999999999999999986 68999999997543 334578899999999999999999999986543
Q ss_pred ---------------------------------------------------eeEEEEecCCCCCHHHHHhhCCC--CCCH
Q 003301 729 ---------------------------------------------------FKALVLEYMPNGSLEDYLYSNNF--SFDI 755 (832)
Q Consensus 729 ---------------------------------------------------~~~lv~e~~~~g~L~~~l~~~~~--~~~~ 755 (832)
..|+||||+++++|.+++..... ..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~ 163 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH 163 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence 37999999999999999986542 2566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc-----------cccccccccc
Q 003301 756 LQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES-----------MKQTLTLATI 824 (832)
Q Consensus 756 ~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~-----------~~~~~~~gt~ 824 (832)
..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+....... ......+||+
T Consensus 164 ~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 240 (332)
T 3qd2_B 164 GVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240 (332)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred HHHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence 778999999999999999 99999999999999999999999999999987754421 1123356999
Q ss_pred cccCCCC
Q 003301 825 GYMAPGL 831 (832)
Q Consensus 825 ~y~APE~ 831 (832)
.|+|||+
T Consensus 241 ~y~aPE~ 247 (332)
T 3qd2_B 241 LYMSPEQ 247 (332)
T ss_dssp GGSCHHH
T ss_pred CccChHH
Confidence 9999996
No 118
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.95 E-value=1.3e-28 Score=268.57 Aligned_cols=171 Identities=26% Similarity=0.489 Sum_probs=147.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEec--------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcC-CCCceeeeceEEecC
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL--------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSV-RHRNLVKIISSCTNN 727 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 727 (832)
.++|++.+.||+|+||.||+|++. ++..||||+++... ....+.+.+|+++++++ +||||+++++++.++
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 478999999999999999999863 34579999987553 33456889999999999 899999999999999
Q ss_pred CeeEEEEecCCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe
Q 003301 728 DFKALVLEYMPNGSLEDYLYSNN---------------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL 792 (832)
Q Consensus 728 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~ 792 (832)
+..|+||||+++|+|.++++..+ ..+++..+..++.|++.||+||| ++||+||||||+||++
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEE
Confidence 99999999999999999998653 24789999999999999999999 9999999999999999
Q ss_pred CCCCcEEEeccccccccCCCccc-ccccccccccccCCCC
Q 003301 793 DKDMVAHLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 793 ~~~~~~kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
+.++.+||+|||+|+........ ......+|+.|+|||+
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~ 276 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEA 276 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHH
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhH
Confidence 99999999999999876543322 2233457889999996
No 119
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.95 E-value=8.1e-29 Score=260.24 Aligned_cols=171 Identities=28% Similarity=0.448 Sum_probs=148.6
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
..++|++.+.||+|+||.||+|.+.++..||+|++..... ..+.+.+|++++++++||||+++++++.+.+..|+||||
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 3578999999999999999999998888999999975533 336788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcccc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMK 816 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~ 816 (832)
+++++|.+++......+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+|||.++.........
T Consensus 101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~ 177 (283)
T 3gen_A 101 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTS 177 (283)
T ss_dssp CTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHS
T ss_pred cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEcccccccccccccccc
Confidence 9999999999875557999999999999999999999 9999999999999999999999999999998765543333
Q ss_pred cccccccccccCCCC
Q 003301 817 QTLTLATIGYMAPGL 831 (832)
Q Consensus 817 ~~~~~gt~~y~APE~ 831 (832)
.....+|+.|+|||+
T Consensus 178 ~~~~~~~~~y~aPE~ 192 (283)
T 3gen_A 178 SVGSKFPVRWSPPEV 192 (283)
T ss_dssp TTSTTSCGGGCCHHH
T ss_pred ccCCccCcccCCHHH
Confidence 333457889999996
No 120
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=271.98 Aligned_cols=171 Identities=23% Similarity=0.377 Sum_probs=148.0
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
..++|++.+.||+|+||.||+|.+. +|+.||+|++.... ....+.+.+|+++++.++||||+++++++.+++..|+|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 4578999999999999999999875 58999999987554 23456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC---CCCcEEEeccccccccC
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLD---KDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~---~~~~~kl~DFg~a~~~~ 810 (832)
|||+++|+|.+++.... .+++..+..++.|++.|++||| ++||+||||||+||+++ .++.+||+|||+|+...
T Consensus 89 ~E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~ 164 (444)
T 3soa_A 89 FDLVTGGELFEDIVARE-YYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVE 164 (444)
T ss_dssp ECCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCC
T ss_pred EEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEec
Confidence 99999999999998764 6999999999999999999999 99999999999999998 56889999999998765
Q ss_pred CCcccccccccccccccCCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~l 832 (832)
..... ....+||+.|+|||++
T Consensus 165 ~~~~~-~~~~~gt~~Y~APE~l 185 (444)
T 3soa_A 165 GEQQA-WFGFAGTPGYLSPEVL 185 (444)
T ss_dssp TTCCB-CCCSCSCGGGCCHHHH
T ss_pred CCCce-eecccCCcccCCHHHh
Confidence 44322 2335799999999963
No 121
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.95 E-value=9.2e-29 Score=264.55 Aligned_cols=171 Identities=25% Similarity=0.379 Sum_probs=146.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch-hhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE-GALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
.++|++.+.||+|+||+||+|.+. +++.||||++..... ...+.+.+|+.+++.++||||+++++++.+++..|+|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 478999999999999999999886 589999999875432 234668899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc-c
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE-S 814 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~-~ 814 (832)
|+++++|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+...... .
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 161 (323)
T 3tki_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (323)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred cCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcc
Confidence 999999999997654 6999999999999999999999 9999999999999999999999999999998653222 1
Q ss_pred cccccccccccccCCCCC
Q 003301 815 MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~l 832 (832)
......+||+.|+|||++
T Consensus 162 ~~~~~~~gt~~y~aPE~~ 179 (323)
T 3tki_A 162 RLLNKMCGTLPYVAPELL 179 (323)
T ss_dssp CCBCSCCSCGGGSCHHHH
T ss_pred cccCCCccCcCccCcHHh
Confidence 122345799999999963
No 122
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.95 E-value=6.3e-29 Score=264.06 Aligned_cols=174 Identities=30% Similarity=0.487 Sum_probs=141.1
Q ss_pred HHHHHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 653 ELLQATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 653 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
++....++|++.+.||+|+||+||+|++ +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..
T Consensus 31 ~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 109 (309)
T 3p86_A 31 DMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNL 109 (309)
T ss_dssp -CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCC
T ss_pred cccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCce
Confidence 3334467899999999999999999987 78899999987553 33446788999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeEeCCCCcEEEeccccc
Q 003301 731 ALVLEYMPNGSLEDYLYSNNF--SFDILQRLSVIIDVALALEYLHFGYSNP--VVHCDIKPSNVLLDKDMVAHLSDFGIA 806 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~~~~~~kl~DFg~a 806 (832)
|+||||+++|+|.+++..... .+++..+..++.|++.||+||| +.| |+||||||+||+++.++.+||+|||+|
T Consensus 110 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a 186 (309)
T 3p86_A 110 SIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLS 186 (309)
T ss_dssp EEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC--
T ss_pred EEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCC
Confidence 999999999999999986542 2899999999999999999999 899 999999999999999999999999999
Q ss_pred cccCCCcccccccccccccccCCCC
Q 003301 807 KLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 807 ~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+....... ......||+.|+|||+
T Consensus 187 ~~~~~~~~-~~~~~~gt~~y~aPE~ 210 (309)
T 3p86_A 187 RLKASTFL-SSKSAAGTPEWMAPEV 210 (309)
T ss_dssp ----------------CCTTSCHHH
T ss_pred cccccccc-ccccCCCCccccChhh
Confidence 86543322 2233569999999996
No 123
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.95 E-value=1.1e-28 Score=264.66 Aligned_cols=169 Identities=26% Similarity=0.411 Sum_probs=138.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec----CCcEEEEEEEeccc----hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL----DGMEVAIKVFHLQL----EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDF 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 729 (832)
.++|++.+.||+|+||.||+|+.. +++.||+|+++... ......+.+|++++++++||||+++++++..++.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 468999999999999999999873 68999999987542 2234567889999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
.|+||||+++++|.+++...+ .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+..
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~ 171 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKES 171 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred EEEEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence 999999999999999997654 6899999999999999999999 999999999999999999999999999999864
Q ss_pred CCCcccccccccccccccCCCC
Q 003301 810 SGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 810 ~~~~~~~~~~~~gt~~y~APE~ 831 (832)
..... .....+||+.|+|||+
T Consensus 172 ~~~~~-~~~~~~gt~~y~aPE~ 192 (327)
T 3a62_A 172 IHDGT-VTHTFCGTIEYMAPEI 192 (327)
T ss_dssp --------CTTSSCCTTSCHHH
T ss_pred ccCCc-cccccCCCcCccCHhh
Confidence 33322 2233579999999996
No 124
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.95 E-value=1.1e-28 Score=259.71 Aligned_cols=168 Identities=27% Similarity=0.429 Sum_probs=144.8
Q ss_pred cCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccch--hhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLE--GALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
++|++.+.||+|+||.||+|++.+++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..|+||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 57999999999999999999997799999999875432 2346788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcccc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMK 816 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~ 816 (832)
++ ++|.+++......+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||.|+....... .
T Consensus 82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~ 156 (288)
T 1ob3_A 82 LD-QDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR-K 156 (288)
T ss_dssp CS-EEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred cC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcccc-c
Confidence 96 5999999876667999999999999999999999 99999999999999999999999999999987643322 2
Q ss_pred cccccccccccCCCC
Q 003301 817 QTLTLATIGYMAPGL 831 (832)
Q Consensus 817 ~~~~~gt~~y~APE~ 831 (832)
.....||+.|+|||+
T Consensus 157 ~~~~~~t~~y~aPE~ 171 (288)
T 1ob3_A 157 YTHEIVTLWYRAPDV 171 (288)
T ss_dssp -----CCCTTCCHHH
T ss_pred cccccccccccCchh
Confidence 233568999999996
No 125
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.95 E-value=2.4e-28 Score=258.70 Aligned_cols=169 Identities=28% Similarity=0.429 Sum_probs=142.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch--------------------------hhHHHHHHHHHHHh
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE--------------------------GALKSFDVECEVLK 710 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------------------------~~~~~~~~e~~~l~ 710 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 478999999999999999999875 488999999865421 12356889999999
Q ss_pred cCCCCceeeeceEEec--CCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCC
Q 003301 711 SVRHRNLVKIISSCTN--NDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPS 788 (832)
Q Consensus 711 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~ 788 (832)
+++||||+++++++.+ .+..|+||||+++++|.++... ..+++..+..++.|++.||+||| +.||+||||||+
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~ 166 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKPS 166 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHH
Confidence 9999999999999986 5689999999999999887643 35899999999999999999999 999999999999
Q ss_pred CeEeCCCCcEEEeccccccccCCCcccccccccccccccCCCCC
Q 003301 789 NVLLDKDMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 789 NIl~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
||+++.++.+||+|||+|+........ .....||+.|+|||++
T Consensus 167 Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~gt~~y~aPE~~ 209 (298)
T 2zv2_A 167 NLLVGEDGHIKIADFGVSNEFKGSDAL-LSNTVGTPAFMAPESL 209 (298)
T ss_dssp GEEECTTSCEEECCCTTCEECSSSSCE-ECCCCSCGGGCCGGGC
T ss_pred HEEECCCCCEEEecCCCcccccccccc-ccCCcCCccccChhhh
Confidence 999999999999999999876544322 2335799999999974
No 126
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.95 E-value=1.2e-28 Score=268.03 Aligned_cols=170 Identities=31% Similarity=0.382 Sum_probs=139.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHH-HhcCCCCceeeeceEEecCCeeEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEV-LKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
.++|++.+.||+|+||+||+|++.. ++.||+|++.... ......+.+|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 4679999999999999999999864 8889999997653 2233456667776 577899999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||++||+|.+++.+.+ .+++..+..++.|++.||+||| ++||+||||||+||+++.+|.+||+|||+|+.....
T Consensus 117 v~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~ 192 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH 192 (373)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCC
T ss_pred EEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCccccccccC
Confidence 999999999999998654 6899999999999999999999 999999999999999999999999999999864332
Q ss_pred cccccccccccccccCCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~l 832 (832)
.. .....+||+.|+|||++
T Consensus 193 ~~-~~~~~~gt~~y~aPE~~ 211 (373)
T 2r5t_A 193 NS-TTSTFCGTPEYLAPEVL 211 (373)
T ss_dssp CC-CCCSBSCCCCCCCHHHH
T ss_pred CC-ccccccCCccccCHHHh
Confidence 22 23346799999999963
No 127
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.95 E-value=2.7e-28 Score=264.95 Aligned_cols=170 Identities=24% Similarity=0.454 Sum_probs=148.4
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..|+|
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3578999999999999999999886 48999999997543 33456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC---CcEEEeccccccccC
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKD---MVAHLSDFGIAKLLS 810 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~---~~~kl~DFg~a~~~~ 810 (832)
|||+++|+|.+++.... .+++..+..++.|++.||+||| ++||+||||||+||+++.+ +.+||+|||+|+...
T Consensus 107 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~ 182 (362)
T 2bdw_A 107 FDLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 182 (362)
T ss_dssp ECCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCT
T ss_pred EecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEec
Confidence 99999999999997654 6899999999999999999999 9999999999999999865 459999999998765
Q ss_pred CCcccccccccccccccCCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~l 832 (832)
.... ....+||+.|+|||++
T Consensus 183 ~~~~--~~~~~gt~~y~aPE~~ 202 (362)
T 2bdw_A 183 DSEA--WHGFAGTPGYLSPEVL 202 (362)
T ss_dssp TCCS--CCCSCSCTTTCCHHHH
T ss_pred CCcc--cccCCCCccccCHHHH
Confidence 4332 2335799999999963
No 128
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=267.67 Aligned_cols=170 Identities=19% Similarity=0.252 Sum_probs=143.5
Q ss_pred HhcCCCCCCeeeccCCceEEEEE------ecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCC---CCceeeeceEEecC
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGS------FLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVR---HRNLVKIISSCTNN 727 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~------~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~ 727 (832)
..++|.+.+.||+|+||+||+|. ..+++.||||++.... ...+.+|+++++.++ |+||+++++++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 35789999999999999999994 3358899999987543 346677777777776 99999999999999
Q ss_pred CeeEEEEecCCCCCHHHHHhh----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---------
Q 003301 728 DFKALVLEYMPNGSLEDYLYS----NNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK--------- 794 (832)
Q Consensus 728 ~~~~lv~e~~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~--------- 794 (832)
+..|+||||+++|+|.+++.. ....+++..+..++.|++.||+||| ++||+||||||+|||++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~ 216 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDED 216 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC----
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccc
Confidence 999999999999999999974 3446999999999999999999999 999999999999999998
Q ss_pred --CCcEEEeccccccccCC-CcccccccccccccccCCCCC
Q 003301 795 --DMVAHLSDFGIAKLLSG-EESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 795 --~~~~kl~DFg~a~~~~~-~~~~~~~~~~gt~~y~APE~l 832 (832)
++.+||+|||+|+.+.. .........+||+.|||||++
T Consensus 217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~ 257 (365)
T 3e7e_A 217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEML 257 (365)
T ss_dssp --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHH
T ss_pred cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHh
Confidence 89999999999976432 122233446799999999963
No 129
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.95 E-value=1.9e-28 Score=262.26 Aligned_cols=167 Identities=28% Similarity=0.413 Sum_probs=144.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCC----eeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNND----FKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv 733 (832)
.++|++.+.||+|+||+||+|++ .++.||||++..... ......+|+.++++++||||+++++++.... ..|+|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEE-CCCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 47899999999999999999988 489999999975533 2345566899999999999999999998744 46999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC----------CeEecCCCCCCeEeCCCCcEEEecc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSN----------PVVHCDIKPSNVLLDKDMVAHLSDF 803 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~----------~ivH~Dlkp~NIl~~~~~~~kl~DF 803 (832)
|||+++|+|.++++.. .+++..+..++.|++.|++||| +. ||+||||||+||+++.++.+||+||
T Consensus 101 ~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DF 175 (322)
T 3soc_A 101 TAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF 175 (322)
T ss_dssp EECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCC
T ss_pred EecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeEEEccC
Confidence 9999999999999875 4899999999999999999999 88 9999999999999999999999999
Q ss_pred ccccccCCCccc-ccccccccccccCCCC
Q 003301 804 GIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 804 g~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
|+|+........ ......||+.|+|||+
T Consensus 176 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~ 204 (322)
T 3soc_A 176 GLALKFEAGKSAGDTHGQVGTRRYMAPEV 204 (322)
T ss_dssp TTCEEECTTSCCCCCTTCCCCGGGCCHHH
T ss_pred CcccccccccCccccccCccCccccCHhh
Confidence 999876543322 2233579999999996
No 130
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.95 E-value=3.4e-28 Score=260.60 Aligned_cols=168 Identities=23% Similarity=0.382 Sum_probs=148.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchh------hHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEG------ALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
.++|++.+.||+|+||.||+|.+. +++.||+|++...... ..+.+.+|++++++++||||+++++++.+.+..
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 357999999999999999999986 4899999998754321 356789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC----cEEEeccccc
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM----VAHLSDFGIA 806 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~----~~kl~DFg~a 806 (832)
|+||||+++++|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++.++ .+||+|||+|
T Consensus 90 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a 165 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLA 165 (326)
T ss_dssp EEEEECCCSCBHHHHHTTSS-CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCCHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCC
Confidence 99999999999999997654 6999999999999999999999 99999999999999998887 8999999999
Q ss_pred cccCCCcccccccccccccccCCCC
Q 003301 807 KLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 807 ~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+....... ....+||+.|+|||+
T Consensus 166 ~~~~~~~~--~~~~~gt~~y~aPE~ 188 (326)
T 2y0a_A 166 HKIDFGNE--FKNIFGTPEFVAPEI 188 (326)
T ss_dssp EECCTTSC--CCCCCSCTTTCCHHH
T ss_pred eECCCCCc--cccccCCcCcCCcee
Confidence 87754332 233569999999996
No 131
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.95 E-value=1.6e-28 Score=265.88 Aligned_cols=171 Identities=22% Similarity=0.358 Sum_probs=146.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch-----hhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE-----GALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKA 731 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 731 (832)
.++|++.+.||+|+||+||+|.+. +++.||||++..... ...+.+.+|+++++.++||||+++++++.+++..|
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 467999999999999999999886 589999999875321 13577899999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc---EEEecccc
Q 003301 732 LVLEYMPNGSLEDYLYSN---NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV---AHLSDFGI 805 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~---~kl~DFg~ 805 (832)
+||||+++++|.+++... ...+++..+..++.|++.||+||| ++||+||||||+||+++.++. +||+|||+
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~ 179 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGV 179 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcc
Confidence 999999999998887542 335899999999999999999999 999999999999999986654 99999999
Q ss_pred ccccCCCcccccccccccccccCCCCC
Q 003301 806 AKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 806 a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
|+....... .....+||+.|+|||++
T Consensus 180 a~~~~~~~~-~~~~~~gt~~y~aPE~~ 205 (351)
T 3c0i_A 180 AIQLGESGL-VAGGRVGTPHFMAPEVV 205 (351)
T ss_dssp CEECCTTSC-BCCCCCSCGGGCCHHHH
T ss_pred eeEecCCCe-eecCCcCCcCccCHHHH
Confidence 987754332 22335799999999963
No 132
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.95 E-value=1.8e-28 Score=267.48 Aligned_cols=171 Identities=25% Similarity=0.495 Sum_probs=138.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec----CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL----DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
.++|++.+.||+|+||.||+|++. ++..||||+++... ....+.+.+|++++++++||||+++++++.+.+..|+
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 368999999999999999999875 46789999987543 3445689999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+++|+|.++++.....+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+.....
T Consensus 124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 200 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDD 200 (373)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccC
Confidence 99999999999999887667999999999999999999999 999999999999999999999999999999876543
Q ss_pred cccc--cccccccccccCCCC
Q 003301 813 ESMK--QTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~~~--~~~~~gt~~y~APE~ 831 (832)
.... .....+|+.|+|||+
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~ 221 (373)
T 2qol_A 201 PEAAYTTRGGKIPIRWTSPEA 221 (373)
T ss_dssp -------------CTTSCHHH
T ss_pred CccceeccCCCcCCCccChhh
Confidence 3211 112245788999996
No 133
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.95 E-value=3.8e-28 Score=271.60 Aligned_cols=169 Identities=29% Similarity=0.489 Sum_probs=150.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|.+.+.||+|+||.||+|++. +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 468999999999999999999986 59999999997543 22346788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++|+|.+++.+.+ .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||+|+......
T Consensus 95 ~E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~ 170 (476)
T 2y94_A 95 MEYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170 (476)
T ss_dssp EECCSSEEHHHHTTSSS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence 99999999999997654 6999999999999999999999 9999999999999999999999999999998765433
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
. ....+||+.|+|||++
T Consensus 171 ~--~~~~~gt~~y~aPE~~ 187 (476)
T 2y94_A 171 F--LRTSCGSPNYAAPEVI 187 (476)
T ss_dssp C--BCCCCSCSTTCCHHHH
T ss_pred c--ccccCCCcCeEChhhc
Confidence 2 2335799999999963
No 134
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.95 E-value=3.3e-28 Score=275.56 Aligned_cols=170 Identities=28% Similarity=0.391 Sum_probs=149.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|++. +|+.||+|++.... ......+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999986 58999999997542 23346788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 734 LEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
|||++||+|.+++...+ ..+++..+..++.||+.||+||| ++||+||||||+||+++.++.+||+|||+|+.....
T Consensus 263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~ 339 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 339 (576)
T ss_dssp ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence 99999999999997654 34899999999999999999999 999999999999999999999999999999876543
Q ss_pred cccccccccccccccCCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~l 832 (832)
.. ....+||+.|+|||++
T Consensus 340 ~~--~~~~~GT~~Y~APEvl 357 (576)
T 2acx_A 340 QT--IKGRVGTVGYMAPEVV 357 (576)
T ss_dssp CC--EECCCSCGGGCCHHHH
T ss_pred cc--ccccCCCccccCHHHH
Confidence 32 2335799999999963
No 135
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.95 E-value=1.2e-28 Score=260.74 Aligned_cols=171 Identities=29% Similarity=0.504 Sum_probs=144.9
Q ss_pred hcCCCCCCeeeccCCceEEEEEe-----cCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEec--CCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSF-----LDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTN--NDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~ 730 (832)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46899999999999999999984 2588999999987766667889999999999999999999999865 3568
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
|+||||+++++|.+++...+..+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||+|+...
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~ 165 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 165 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC---
T ss_pred EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCccccccc
Confidence 9999999999999999887666999999999999999999999 9999999999999999999999999999998764
Q ss_pred CCccc--ccccccccccccCCCC
Q 003301 811 GEESM--KQTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~--~~~~~~gt~~y~APE~ 831 (832)
..... ......+|+.|+|||+
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~ 188 (295)
T 3ugc_A 166 QDKEFFKVKEPGESPIFWYAPES 188 (295)
T ss_dssp ----------CTTCGGGGCCHHH
T ss_pred CCcceeeeccCCCCccceeCcHH
Confidence 43221 1223457888999996
No 136
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=261.60 Aligned_cols=169 Identities=26% Similarity=0.299 Sum_probs=141.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch--hhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE--GALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.++||+|+||+||+|.+. +++.||||++..... ........|+..+.++ +||||+++++++.+++..|+|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 367999999999999999999987 589999999865432 2233445566555554 899999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+ +++|.+++...+..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+......
T Consensus 136 ~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~ 211 (311)
T 3p1a_A 136 TELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG 211 (311)
T ss_dssp EECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC---
T ss_pred Eecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC
Confidence 9999 77999998876667999999999999999999999 9999999999999999999999999999998764433
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
. .....||+.|+|||++
T Consensus 212 ~--~~~~~gt~~y~aPE~~ 228 (311)
T 3p1a_A 212 A--GEVQEGDPRYMAPELL 228 (311)
T ss_dssp -----CCCCCGGGCCGGGG
T ss_pred C--CcccCCCccccCHhHh
Confidence 2 2335699999999974
No 137
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.8e-27 Score=248.78 Aligned_cols=210 Identities=25% Similarity=0.269 Sum_probs=143.9
Q ss_pred cccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCC
Q 003301 344 NLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLA 423 (832)
Q Consensus 344 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 423 (832)
+|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45556666666555555555566666666666666655444555666666666666666665555566666666666666
Q ss_pred CCcCCCCCCcccccCcccceeeecCCcccCC-CccccccccccceecccCcccCCccCCccccccccc----eeeccccc
Q 003301 424 SNELNSVIPSTFWNLKDILSLNFSSNFLNGS-LPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQ----DLSLRDNG 498 (832)
Q Consensus 424 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~ 498 (832)
+|.+++..+..|..+++|++|++++|++++. +|..++.+++|+.|+|++|++++..+..|..+.+|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666666555666666666666666666653 466677777777777777777766666777666666 78888888
Q ss_pred ccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCCC
Q 003301 499 LQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPRG 554 (832)
Q Consensus 499 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 554 (832)
+++..+..+.. .+|+.|+|++|++++..+..+..+++|+.|+|++|+++|.+|..
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 88655555544 47889999999988777777788899999999999999888764
No 138
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.95 E-value=4.4e-28 Score=258.85 Aligned_cols=170 Identities=27% Similarity=0.454 Sum_probs=132.7
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..|+||
T Consensus 3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 82 (317)
T 2pmi_A 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF 82 (317)
T ss_dssp ----------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred cccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence 3578999999999999999999876 48999999997553 233467889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 735 EYMPNGSLEDYLYSNN-----FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
||++ ++|.+++.... ..+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||.|+..
T Consensus 83 e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 158 (317)
T 2pmi_A 83 EFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAF 158 (317)
T ss_dssp ECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEET
T ss_pred EecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceec
Confidence 9997 69999886532 35899999999999999999999 999999999999999999999999999999876
Q ss_pred CCCcccccccccccccccCCCC
Q 003301 810 SGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 810 ~~~~~~~~~~~~gt~~y~APE~ 831 (832)
..... ......||+.|+|||+
T Consensus 159 ~~~~~-~~~~~~~t~~y~aPE~ 179 (317)
T 2pmi_A 159 GIPVN-TFSSEVVTLWYRAPDV 179 (317)
T ss_dssp TSCCC-CCCCCCSCCTTCCHHH
T ss_pred CCCcc-cCCCCcccccccCchH
Confidence 43322 2233569999999996
No 139
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.95 E-value=5.7e-28 Score=273.15 Aligned_cols=171 Identities=27% Similarity=0.390 Sum_probs=149.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|++. +|+.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 368999999999999999999986 48999999997543 23346788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 734 LEYMPNGSLEDYLYSNN---FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
|||++||+|.+++.... ..+++..+..++.||+.||+||| ++||+||||||+||+++.+|.+||+|||+|+...
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 99999999999987542 35899999999999999999999 9999999999999999999999999999998765
Q ss_pred CCcccccccccccccccCCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~l 832 (832)
..... ....+||+.|+|||++
T Consensus 341 ~~~~~-~~~~~GT~~Y~APE~l 361 (543)
T 3c4z_A 341 AGQTK-TKGYAGTPGFMAPELL 361 (543)
T ss_dssp TTCCC-BCCCCSCTTTSCHHHH
T ss_pred CCCcc-cccccCCccccChhhh
Confidence 44322 2335799999999963
No 140
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.95 E-value=4.3e-28 Score=264.33 Aligned_cols=164 Identities=23% Similarity=0.427 Sum_probs=141.0
Q ss_pred CCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEecCCCCC
Q 003301 663 ASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEYMPNGS 741 (832)
Q Consensus 663 ~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g~ 741 (832)
..+.||+|+||.||+|.+. +|+.||+|+++.......+.+.+|++++++++||||+++++++.+.+..|+||||+++++
T Consensus 93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~ 172 (373)
T 2x4f_A 93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGE 172 (373)
T ss_dssp EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCE
T ss_pred cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCc
Confidence 3678999999999999875 589999999987665566789999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe--CCCCcEEEeccccccccCCCccccccc
Q 003301 742 LEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL--DKDMVAHLSDFGIAKLLSGEESMKQTL 819 (832)
Q Consensus 742 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~--~~~~~~kl~DFg~a~~~~~~~~~~~~~ 819 (832)
|.+++......+++..+..++.|++.||+||| +.||+||||||+||++ +.++.+||+|||+|+....... ...
T Consensus 173 L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~--~~~ 247 (373)
T 2x4f_A 173 LFDRIIDESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK--LKV 247 (373)
T ss_dssp EHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB--CCC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc--ccc
Confidence 99999876667999999999999999999999 9999999999999999 6678999999999987754432 223
Q ss_pred ccccccccCCCC
Q 003301 820 TLATIGYMAPGL 831 (832)
Q Consensus 820 ~~gt~~y~APE~ 831 (832)
.+||+.|+|||+
T Consensus 248 ~~gt~~y~aPE~ 259 (373)
T 2x4f_A 248 NFGTPEFLAPEV 259 (373)
T ss_dssp CCSSCTTCCHHH
T ss_pred ccCCCcEeChhh
Confidence 569999999996
No 141
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.95 E-value=1.5e-28 Score=268.86 Aligned_cols=172 Identities=26% Similarity=0.430 Sum_probs=148.4
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
..++|++.+.||+|+||.||+|.+. +++.||||+++... ....+.+.+|++++++++||||+++++++..++..|+||
T Consensus 112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 191 (377)
T 3cbl_A 112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM 191 (377)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence 3568899999999999999999986 58999999987543 233457889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
||+++|+|.++++..+..+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+|||+|+.......
T Consensus 192 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~ 268 (377)
T 3cbl_A 192 ELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY 268 (377)
T ss_dssp ECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE
T ss_pred EcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCce
Confidence 999999999999876656899999999999999999999 99999999999999999999999999999987543322
Q ss_pred ccc-ccccccccccCCCC
Q 003301 815 MKQ-TLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~-~~~~gt~~y~APE~ 831 (832)
... ....+++.|+|||+
T Consensus 269 ~~~~~~~~~~~~y~aPE~ 286 (377)
T 3cbl_A 269 AASGGLRQVPVKWTAPEA 286 (377)
T ss_dssp ECCSSCCEEEGGGSCHHH
T ss_pred eecCCCCCCCcCcCCHhH
Confidence 111 12336788999996
No 142
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.95 E-value=3.8e-28 Score=263.86 Aligned_cols=168 Identities=23% Similarity=0.313 Sum_probs=139.5
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.++|++.+.||+|+||+||+|++. +++.||||++..... ..+.+.+|+.+++.++||||+++++++.+.+..|+||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 578999999999999999999986 589999999975432 236788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc--EEEeccccccccCCCcc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV--AHLSDFGIAKLLSGEES 814 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~--~kl~DFg~a~~~~~~~~ 814 (832)
+++|+|.+++...+ .+++..+..++.|++.||+||| ++||+||||||+||+++.++. +||+|||+|+......
T Consensus 98 ~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~- 172 (361)
T 3uc3_A 98 ASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS- 172 (361)
T ss_dssp CCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC--------
T ss_pred CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccC-
Confidence 99999999997654 6999999999999999999999 999999999999999987765 9999999998543222
Q ss_pred cccccccccccccCCCCC
Q 003301 815 MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~l 832 (832)
.....+||+.|+|||++
T Consensus 173 -~~~~~~gt~~y~aPE~~ 189 (361)
T 3uc3_A 173 -QPKSTVGTPAYIAPEVL 189 (361)
T ss_dssp ---------CTTSCHHHH
T ss_pred -CCCCCcCCCCcCChhhh
Confidence 22335699999999963
No 143
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.95 E-value=3.3e-28 Score=273.78 Aligned_cols=169 Identities=25% Similarity=0.382 Sum_probs=133.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEec-----CCe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTN-----NDF 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-----~~~ 729 (832)
.++|++.+.||+|+||+||+|.+. +++.||||++.... ....+++.+|++++++++||||+++++++.. ...
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 478999999999999999999876 58999999986543 3345778899999999999999999999844 357
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
.|+||||+ +++|.++++... .+++..+..++.||+.||+||| +.||+||||||+|||++.++.+||+|||+|+..
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~ 206 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTPV-YLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTV 206 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred EEEEEecc-ccchhhhcccCC-CCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchhc
Confidence 89999998 679999997654 6999999999999999999999 999999999999999999999999999999876
Q ss_pred CCCcc--------------------------cccccccccccccCCCC
Q 003301 810 SGEES--------------------------MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 810 ~~~~~--------------------------~~~~~~~gt~~y~APE~ 831 (832)
..... ...+..+||+.|+|||+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~ 254 (458)
T 3rp9_A 207 DYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPEL 254 (458)
T ss_dssp TSCTTCCCCCC---------------------------CCCTTCCHHH
T ss_pred cCccccccccccCccccccccccccccccccccccCCcccccccChHH
Confidence 43221 12234578999999995
No 144
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-28 Score=278.13 Aligned_cols=234 Identities=22% Similarity=0.252 Sum_probs=145.6
Q ss_pred CCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEc
Q 003301 295 NLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDL 374 (832)
Q Consensus 295 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 374 (832)
+|++|+|++|.+++..|..+..+. +|++|+|++|.+++..| +..+++|++|+|++|.+++..+. ++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----TTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----CCcCEEEC
Confidence 455555555555544444444443 45555555555544433 66666777777777766644322 56777777
Q ss_pred cCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccc-cCcccceeeecCCcccC
Q 003301 375 VNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFW-NLKDILSLNFSSNFLNG 453 (832)
Q Consensus 375 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 453 (832)
++|.+++..+. .+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..|. .+++|+.|+|++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 77777654433 245667777777777766666666677777777777777666666664 56677777777777665
Q ss_pred CCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCccc-ccCchhhh
Q 003301 454 SLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLS-GNIPTSME 532 (832)
Q Consensus 454 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~ 532 (832)
. | ....+++|+.|+|++|++++ +|..|..+++|+.|+|++|.|++ +|..++.+++|+.|++++|+++ +.+|..+.
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 V-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred c-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 4 2 23346677777777777764 33446677777777777777764 5666667777777777777776 55666666
Q ss_pred hhccCCeeeCC
Q 003301 533 KLLYLKDLNLS 543 (832)
Q Consensus 533 ~l~~L~~l~l~ 543 (832)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 66666666654
No 145
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.95 E-value=1.3e-27 Score=254.13 Aligned_cols=182 Identities=36% Similarity=0.546 Sum_probs=158.1
Q ss_pred ccccchHHHHHHhcCCCCC------CeeeccCCceEEEEEecCCcEEEEEEEeccc----hhhHHHHHHHHHHHhcCCCC
Q 003301 646 RRRFSYKELLQATNQFNAS------NLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL----EGALKSFDVECEVLKSVRHR 715 (832)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~ 715 (832)
...|++.++...+++|... +.||+|+||.||+|.+ +++.||||++.... ....+.+.+|++++++++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 3568899999999988877 9999999999999987 78899999986532 33457889999999999999
Q ss_pred ceeeeceEEecCCeeEEEEecCCCCCHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC
Q 003301 716 NLVKIISSCTNNDFKALVLEYMPNGSLEDYLYSN--NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLD 793 (832)
Q Consensus 716 niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~ 793 (832)
||+++++++.+.+..|+||||+++++|.+++... ...+++..+..++.|++.||+||| +.||+||||||+||+++
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili~ 167 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLD 167 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEC
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEEc
Confidence 9999999999999999999999999999998743 235899999999999999999999 99999999999999999
Q ss_pred CCCcEEEeccccccccCCCccc-ccccccccccccCCCC
Q 003301 794 KDMVAHLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 794 ~~~~~kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
.++.+||+|||.++........ ......||+.|+|||+
T Consensus 168 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~ 206 (307)
T 2nru_A 168 EAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEA 206 (307)
T ss_dssp TTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHH
T ss_pred CCCcEEEeecccccccccccccccccccCCCcCcCChHH
Confidence 9999999999999876543222 2233569999999996
No 146
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.95 E-value=3.3e-28 Score=253.17 Aligned_cols=170 Identities=28% Similarity=0.450 Sum_probs=151.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEecC
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEYM 737 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 737 (832)
.++|++.+.||+|+||.||+|.+.+++.||+|++..... ..+.+.+|++++++++||||+++++++.+++..|+||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 467899999999999999999998889999999976543 3367899999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccccc
Q 003301 738 PNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMKQ 817 (832)
Q Consensus 738 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~~ 817 (832)
++++|.+++......+++..+..++.|++.|++||| ++|++||||||+||+++.++.+||+|||.++..........
T Consensus 86 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~ 162 (267)
T 3t9t_A 86 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS 162 (267)
T ss_dssp TTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHST
T ss_pred CCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEccccccccccccccccc
Confidence 999999999887667999999999999999999999 99999999999999999999999999999987654333233
Q ss_pred ccccccccccCCCC
Q 003301 818 TLTLATIGYMAPGL 831 (832)
Q Consensus 818 ~~~~gt~~y~APE~ 831 (832)
....+|+.|+|||+
T Consensus 163 ~~~~~~~~y~aPE~ 176 (267)
T 3t9t_A 163 TGTKFPVKWASPEV 176 (267)
T ss_dssp TSTTCCGGGCCHHH
T ss_pred ccccccccccChhh
Confidence 33557889999996
No 147
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.95 E-value=8.6e-28 Score=251.56 Aligned_cols=168 Identities=26% Similarity=0.375 Sum_probs=150.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.++|++.+.||+|+||.||+|.+.. +..||+|++........+.+.+|++++++++||||+++++++.+.+..|+||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 4679999999999999999998865 778999999876666678899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCcEEEeccccccccCCCc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL---DKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~DFg~a~~~~~~~ 813 (832)
+++++|.+++...+ .+++..+..++.|++.|++||| ++||+||||||+||++ +.++.+||+|||.|.......
T Consensus 88 ~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~ 163 (277)
T 3f3z_A 88 CTGGELFERVVHKR-VFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK 163 (277)
T ss_dssp CCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc
Confidence 99999999987654 5899999999999999999999 9999999999999999 788999999999998765443
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
. .....||+.|+|||+
T Consensus 164 ~--~~~~~~t~~y~aPE~ 179 (277)
T 3f3z_A 164 M--MRTKVGTPYYVSPQV 179 (277)
T ss_dssp C--BCCCCSCTTTCCHHH
T ss_pred c--hhccCCCCCccChHH
Confidence 2 233569999999996
No 148
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.95 E-value=2.2e-28 Score=273.98 Aligned_cols=170 Identities=29% Similarity=0.359 Sum_probs=139.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ......+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999876 48999999997542 23345677899999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYS-NPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~-~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
|||+++|+|.+++...+ .+++..+..++.|++.||+||| + +||+||||||+||+++.++.+||+|||+|+.....
T Consensus 227 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 302 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD 302 (446)
T ss_dssp ECCCSSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred EeeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCC
Confidence 99999999999997654 6899999999999999999999 8 89999999999999999999999999999864333
Q ss_pred cccccccccccccccCCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~l 832 (832)
.. .....+||+.|+|||++
T Consensus 303 ~~-~~~~~~gt~~y~aPE~~ 321 (446)
T 4ejn_A 303 GA-TMKTFCGTPEYLAPEVL 321 (446)
T ss_dssp -----CCSSSCGGGCCHHHH
T ss_pred Cc-ccccccCCccccCHhhc
Confidence 22 23346799999999963
No 149
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.95 E-value=5.6e-29 Score=268.27 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=135.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--------hhhHHHHHHHHHHHhcCC---------CCce---
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--------EGALKSFDVECEVLKSVR---------HRNL--- 717 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~---------h~ni--- 717 (832)
.++|++.+.||+|+||+||+|++ +|+.||||++.... ....+.+.+|+++++.++ ||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46799999999999999999998 78999999997653 223467889999988886 5554
Q ss_pred --------------eeeceEEec-------------CCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 003301 718 --------------VKIISSCTN-------------NDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALE 770 (832)
Q Consensus 718 --------------v~l~~~~~~-------------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ 770 (832)
+++++++.+ .+..|+||||+++|++.+.+.+ ..+++..+..++.|++.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~ 175 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLA 175 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence 444544443 6789999999999977666644 35899999999999999999
Q ss_pred HHhcCCCCCeEecCCCCCCeEeCCCC--------------------cEEEeccccccccCCCcccccccccccccccCCC
Q 003301 771 YLHFGYSNPVVHCDIKPSNVLLDKDM--------------------VAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPG 830 (832)
Q Consensus 771 ~LH~~~~~~ivH~Dlkp~NIl~~~~~--------------------~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE 830 (832)
|||. ++||+||||||+|||++.++ .+||+|||+|+..... ..+||+.|||||
T Consensus 176 ~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~y~aPE 247 (336)
T 2vuw_A 176 VAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------IVVFCDVSMDED 247 (336)
T ss_dssp HHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------EEECCCCTTCSG
T ss_pred HHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------cEEEeecccChh
Confidence 9992 37899999999999999887 9999999999876432 247999999999
Q ss_pred CC
Q 003301 831 LF 832 (832)
Q Consensus 831 ~l 832 (832)
++
T Consensus 248 ~~ 249 (336)
T 2vuw_A 248 LF 249 (336)
T ss_dssp GG
T ss_pred hh
Confidence 75
No 150
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=249.91 Aligned_cols=171 Identities=26% Similarity=0.488 Sum_probs=137.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|++. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 467999999999999999999875 58999999997543 22346788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++++|.+++......+++..+..++.|++.|++||| +.|++||||||+||+++.++.+||+|||.+.......
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~ 166 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH 166 (278)
T ss_dssp EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCC
Confidence 9999999999999877667999999999999999999999 9999999999999999999999999999998765333
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
.. .....||+.|+|||++
T Consensus 167 ~~-~~~~~~~~~y~aPE~~ 184 (278)
T 3cok_A 167 EK-HYTLCGTPNYISPEIA 184 (278)
T ss_dssp -------------------
T ss_pred Cc-ceeccCCCCcCCcchh
Confidence 22 2235699999999974
No 151
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.2e-28 Score=257.64 Aligned_cols=169 Identities=31% Similarity=0.444 Sum_probs=146.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCC--eeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNND--FKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv 733 (832)
.++|++.+.||+|+||+||+|.+.. ++.||||++.... ....+.+.+|++++++++||||+++++++...+ ..|+|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 3679999999999999999999865 8999999997543 334567889999999999999999999987655 78999
Q ss_pred EecCCCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe----CCCCcEEEecccccc
Q 003301 734 LEYMPNGSLEDYLYSNNF--SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL----DKDMVAHLSDFGIAK 807 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~----~~~~~~kl~DFg~a~ 807 (832)
|||+++++|.++++.... .+++..+..++.|++.||+||| +.||+||||||+||++ +.++.+||+|||+|+
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~ 164 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence 999999999999976432 3899999999999999999999 9999999999999999 788899999999998
Q ss_pred ccCCCcccccccccccccccCCCC
Q 003301 808 LLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 808 ~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
....... .....||+.|+|||+
T Consensus 165 ~~~~~~~--~~~~~gt~~y~aPE~ 186 (319)
T 4euu_A 165 ELEDDEQ--FVSLYGTEEYLHPDM 186 (319)
T ss_dssp ECCTTCC--BCCCCSCGGGCCHHH
T ss_pred ecCCCCc--eeecccCCCccCHHH
Confidence 7754432 223569999999996
No 152
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.95 E-value=5.2e-28 Score=259.99 Aligned_cols=168 Identities=26% Similarity=0.378 Sum_probs=146.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 735 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++..... .+.+.+|+++++++ +||||+++++++..++..|+|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 367999999999999999999974 589999999875532 24688899999999 99999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc-----EEEeccccccccC
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV-----AHLSDFGIAKLLS 810 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~-----~kl~DFg~a~~~~ 810 (832)
|+ +++|.+++......+++..+..++.|++.||+||| +.||+||||||+||+++.++. +||+|||+|+...
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~ 161 (330)
T 2izr_A 86 LL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYI 161 (330)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESB
T ss_pred eC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeee
Confidence 99 99999999876667999999999999999999999 999999999999999998887 9999999998764
Q ss_pred CCccc------ccccccccccccCCCC
Q 003301 811 GEESM------KQTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~------~~~~~~gt~~y~APE~ 831 (832)
..... .....+||+.|+|||+
T Consensus 162 ~~~~~~~~~~~~~~~~~gt~~y~aPE~ 188 (330)
T 2izr_A 162 DPETKKHIPYREHKSLTGTARYMSINT 188 (330)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHH
T ss_pred cCCCCccccccccCCcCCCccccChHH
Confidence 43321 1234579999999996
No 153
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.95 E-value=3.8e-28 Score=254.78 Aligned_cols=170 Identities=26% Similarity=0.441 Sum_probs=135.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC----CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD----GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
.++|++.+.||+|+||.||+|.+.. +..||+|++.... ....+.+.+|+.++++++||||+++++++. ++..|+
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 4689999999999999999998753 4569999876543 334567889999999999999999999985 457899
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+++++|.+++......+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||+|+.....
T Consensus 93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 169 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 169 (281)
T ss_dssp EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC----------
T ss_pred EEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCcc
Confidence 99999999999999877667999999999999999999999 999999999999999999999999999999877554
Q ss_pred cccccccccccccccCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~ 831 (832)
.........+|+.|+|||+
T Consensus 170 ~~~~~~~~~~~~~y~aPE~ 188 (281)
T 1mp8_A 170 TYYKASKGKLPIKWMAPES 188 (281)
T ss_dssp ---------CCGGGCCHHH
T ss_pred cccccccCCCcccccChhh
Confidence 4333334457889999996
No 154
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.95 E-value=1.5e-27 Score=255.32 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=126.5
Q ss_pred CCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCC-CCceeeeceEEecCCeeEEEEecCCCCC
Q 003301 664 SNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVR-HRNLVKIISSCTNNDFKALVLEYMPNGS 741 (832)
Q Consensus 664 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~ 741 (832)
.+.||+|+||.||+|.+. +++.||||++... ....+.+|+++++.+. ||||+++++++.+++..|+||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 478999999999999986 4899999998754 2356778999999997 9999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---cEEEeccccccccCCCcccccc
Q 003301 742 LEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM---VAHLSDFGIAKLLSGEESMKQT 818 (832)
Q Consensus 742 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~---~~kl~DFg~a~~~~~~~~~~~~ 818 (832)
|.+++...+ .+++..+..++.|++.|++||| ++||+||||||+||+++.++ .+||+|||+|+....... ...
T Consensus 93 L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~-~~~ 167 (325)
T 3kn6_A 93 LFERIKKKK-HFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ-PLK 167 (325)
T ss_dssp HHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC-ccc
Confidence 999998764 6999999999999999999999 99999999999999997765 899999999987644332 223
Q ss_pred cccccccccCCCCC
Q 003301 819 LTLATIGYMAPGLF 832 (832)
Q Consensus 819 ~~~gt~~y~APE~l 832 (832)
..+||+.|+|||++
T Consensus 168 ~~~~t~~y~aPE~~ 181 (325)
T 3kn6_A 168 TPCFTLHYAAPELL 181 (325)
T ss_dssp --------------
T ss_pred ccCCCcCccCHHHh
Confidence 35689999999974
No 155
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.95 E-value=6.6e-28 Score=268.67 Aligned_cols=169 Identities=24% Similarity=0.377 Sum_probs=143.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecC-----Ce
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNN-----DF 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~ 729 (832)
.++|++.+.||+|+||.||+|.+.. ++.||||++.... ....+++.+|++++++++||||+++++++... +.
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 4789999999999999999998864 8899999997543 33456888999999999999999999999766 57
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
.|+||||++ ++|.++++... .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+..
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~-~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~~ 179 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI-FLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTI 179 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEEecCC-cCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcccc
Confidence 899999995 69999997653 6999999999999999999999 999999999999999999999999999999876
Q ss_pred CCCccc---------------------ccccccccccccCCCC
Q 003301 810 SGEESM---------------------KQTLTLATIGYMAPGL 831 (832)
Q Consensus 810 ~~~~~~---------------------~~~~~~gt~~y~APE~ 831 (832)
...... ..+..+||+.|+|||+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~ 222 (432)
T 3n9x_A 180 NSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPEL 222 (432)
T ss_dssp -------------------------------CCCCCTTCCHHH
T ss_pred cccccccccccccccccccccccchhccccCCCCCccccCHHH
Confidence 443211 1244679999999996
No 156
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=2.5e-28 Score=264.82 Aligned_cols=170 Identities=28% Similarity=0.394 Sum_probs=148.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEec----CCcEEEEEEEeccc----hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCC
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL----DGMEVAIKVFHLQL----EGALKSFDVECEVLKSV-RHRNLVKIISSCTNND 728 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~ 728 (832)
.++|++.+.||+|+||.||+|++. +++.||||+++... ....+.+.+|+++++++ +||||+++++++..++
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 468999999999999999999883 68999999986432 23345677899999999 6999999999999999
Q ss_pred eeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 729 FKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 729 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
..|+||||+++++|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+.
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 208 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKE 208 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred eEEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence 9999999999999999998654 6899999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCcccccccccccccccCCCC
Q 003301 809 LSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 809 ~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
............+||+.|+|||+
T Consensus 209 ~~~~~~~~~~~~~gt~~y~aPE~ 231 (355)
T 1vzo_A 209 FVADETERAYDFCGTIEYMAPDI 231 (355)
T ss_dssp CCGGGGGGGCGGGSCCTTCCHHH
T ss_pred cccCCCCcccCcccCcCccChhh
Confidence 65444434444679999999996
No 157
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.95 E-value=2.1e-28 Score=260.69 Aligned_cols=170 Identities=24% Similarity=0.446 Sum_probs=138.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCe----
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDF---- 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~---- 729 (832)
.++|++.+.||+|+||.||+|++. +++.||||++.... ......+.+|++++++++||||+++++++...+.
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 478999999999999999999974 58999999997653 2334678899999999999999999999876543
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
.|+||||+++++|.+++...+ .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+..
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~ 166 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAI 166 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred cEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence 499999999999999997654 6899999999999999999999 999999999999999999999999999999876
Q ss_pred CCCccc--ccccccccccccCCCC
Q 003301 810 SGEESM--KQTLTLATIGYMAPGL 831 (832)
Q Consensus 810 ~~~~~~--~~~~~~gt~~y~APE~ 831 (832)
...... .....+||+.|+|||+
T Consensus 167 ~~~~~~~~~~~~~~gt~~y~aPE~ 190 (311)
T 3ork_A 167 ADSGNSVTQTAAVIGTAQYLSPEQ 190 (311)
T ss_dssp ---------------CCTTCCHHH
T ss_pred cccccccccccccCcCcccCCHHH
Confidence 443221 2223569999999996
No 158
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.95 E-value=3.9e-28 Score=255.85 Aligned_cols=166 Identities=27% Similarity=0.428 Sum_probs=147.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-C-------cEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-G-------MEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDF 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 729 (832)
.++|++.+.||+|+||.||+|.+.. + ..||+|++........+.+.+|++++++++||||+++++++.+++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 4679999999999999999998754 3 4799999987666667889999999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc--------EEEe
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV--------AHLS 801 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~--------~kl~ 801 (832)
.|+||||+++++|.+++......+++..+..++.|++.||+||| ++||+||||||+||+++.++. +||+
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~ 163 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLS 163 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeec
Confidence 99999999999999999887656999999999999999999999 999999999999999998887 9999
Q ss_pred ccccccccCCCcccccccccccccccCCCC
Q 003301 802 DFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 802 DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
|||.+...... ....||+.|+|||+
T Consensus 164 Dfg~~~~~~~~-----~~~~~~~~y~aPE~ 188 (289)
T 4fvq_A 164 DPGISITVLPK-----DILQERIPWVPPEC 188 (289)
T ss_dssp CCCSCTTTSCH-----HHHHHTTTTSCHHH
T ss_pred cCcccccccCc-----cccCCcCcccCHHH
Confidence 99999765332 22458999999996
No 159
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.95 E-value=3e-28 Score=265.39 Aligned_cols=182 Identities=21% Similarity=0.391 Sum_probs=152.0
Q ss_pred cccchHHHHHHhcCCCCCCeeeccCCceEEEEEec------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcC-CCCcee
Q 003301 647 RRFSYKELLQATNQFNASNLIGTGGFGSVYKGSFL------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSV-RHRNLV 718 (832)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv 718 (832)
..+...++....++|++.+.||+|+||.||+|++. +++.||||++.... ....+.+.+|+++++++ +||||+
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv 89 (359)
T 3vhe_A 10 LPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 89 (359)
T ss_dssp SCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred CCCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCccee
Confidence 34556666667899999999999999999999742 36789999997643 33456789999999999 799999
Q ss_pred eeceEEecCC-eeEEEEecCCCCCHHHHHhhCCC----------------------------------------------
Q 003301 719 KIISSCTNND-FKALVLEYMPNGSLEDYLYSNNF---------------------------------------------- 751 (832)
Q Consensus 719 ~l~~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~---------------------------------------------- 751 (832)
++++++.+.+ ..++||||+++|+|.+++.....
T Consensus 90 ~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3vhe_A 90 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVE 169 (359)
T ss_dssp CEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------
T ss_pred eeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccc
Confidence 9999988755 48999999999999999976532
Q ss_pred -------------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 752 -------------------SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 752 -------------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
.+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+.....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~ 246 (359)
T 3vhe_A 170 EKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD 246 (359)
T ss_dssp --------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSC
T ss_pred ccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeeccc
Confidence 1889999999999999999999 999999999999999999999999999999876433
Q ss_pred cc-cccccccccccccCCCC
Q 003301 813 ES-MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~-~~~~~~~gt~~y~APE~ 831 (832)
.. .......||+.|+|||+
T Consensus 247 ~~~~~~~~~~~t~~y~aPE~ 266 (359)
T 3vhe_A 247 PDYVRKGDARLPLKWMAPET 266 (359)
T ss_dssp TTCEEC--CEECGGGCCHHH
T ss_pred ccchhccccCCCceeEChhh
Confidence 22 22334568999999996
No 160
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.95 E-value=2.1e-28 Score=274.46 Aligned_cols=174 Identities=22% Similarity=0.428 Sum_probs=149.5
Q ss_pred HHHHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 654 LLQATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 654 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
+....++|++.+.||+|+||.||+|.+.++..||||+++... ...+.+.+|++++++++||||+++++++. .+..|+|
T Consensus 183 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv 260 (454)
T 1qcf_A 183 WEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYII 260 (454)
T ss_dssp SBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred eeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEE
Confidence 344567899999999999999999999888999999997543 34578999999999999999999999986 5678999
Q ss_pred EecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 734 LEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
|||+++|+|.++++... ..+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+|+.....
T Consensus 261 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~ 337 (454)
T 1qcf_A 261 TEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDN 337 (454)
T ss_dssp ECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH
T ss_pred EeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC
Confidence 99999999999997532 25789999999999999999999 999999999999999999999999999999876543
Q ss_pred cccccccccccccccCCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~l 832 (832)
.........+|+.|+|||++
T Consensus 338 ~~~~~~~~~~~~~y~aPE~~ 357 (454)
T 1qcf_A 338 EYTAREGAKFPIKWTAPEAI 357 (454)
T ss_dssp HHHTTCSSSSCGGGSCHHHH
T ss_pred ceeccCCCcccccccCHHHh
Confidence 32223334578899999963
No 161
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.1e-27 Score=262.74 Aligned_cols=171 Identities=27% Similarity=0.472 Sum_probs=147.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEec--------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcC-CCCceeeeceEEecC
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL--------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSV-RHRNLVKIISSCTNN 727 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 727 (832)
.++|++.+.||+|+||.||+|++. .+..||||++.... ....+.+.+|+++++++ +||||+++++++..+
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 468999999999999999999863 23579999997653 33457788999999999 999999999999999
Q ss_pred CeeEEEEecCCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe
Q 003301 728 DFKALVLEYMPNGSLEDYLYSNN---------------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL 792 (832)
Q Consensus 728 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~ 792 (832)
+..|+||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.||+||||||+||++
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 224 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLV 224 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEE
Confidence 99999999999999999998654 34899999999999999999999 9999999999999999
Q ss_pred CCCCcEEEeccccccccCCCcc-cccccccccccccCCCC
Q 003301 793 DKDMVAHLSDFGIAKLLSGEES-MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 793 ~~~~~~kl~DFg~a~~~~~~~~-~~~~~~~gt~~y~APE~ 831 (832)
+.++.+||+|||+|+....... .......||+.|+|||+
T Consensus 225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~ 264 (382)
T 3tt0_A 225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEA 264 (382)
T ss_dssp CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHH
T ss_pred cCCCcEEEcccCcccccccccccccccCCCCCcceeCHHH
Confidence 9999999999999987654332 12233457899999996
No 162
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=99.94 E-value=6.5e-28 Score=259.28 Aligned_cols=169 Identities=25% Similarity=0.398 Sum_probs=147.7
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch--------hhHHHHHHHHHHHhcCCCCceeeeceEEecC
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE--------GALKSFDVECEVLKSVRHRNLVKIISSCTNN 727 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 727 (832)
..++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|++++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 4578999999999999999999875 588999999975431 1234677899999999999999999999999
Q ss_pred CeeEEEEecCCCC-CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccc
Q 003301 728 DFKALVLEYMPNG-SLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIA 806 (832)
Q Consensus 728 ~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a 806 (832)
+..++||||+.+| +|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a 177 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSA 177 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred CEEEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecccc
Confidence 9999999999776 9999998654 6999999999999999999999 999999999999999999999999999999
Q ss_pred cccCCCcccccccccccccccCCCC
Q 003301 807 KLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 807 ~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+....... ....+||+.|+|||+
T Consensus 178 ~~~~~~~~--~~~~~gt~~y~aPE~ 200 (335)
T 3dls_A 178 AYLERGKL--FYTFCGTIEYCAPEV 200 (335)
T ss_dssp EECCTTCC--BCEECSCGGGCCHHH
T ss_pred eECCCCCc--eeccCCCccccChhh
Confidence 87654432 233569999999996
No 163
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.94 E-value=2.1e-27 Score=261.45 Aligned_cols=172 Identities=19% Similarity=0.274 Sum_probs=148.8
Q ss_pred hcCCCCCCeeecc--CCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 658 TNQFNASNLIGTG--GFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G--~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
.++|++.+.||+| +||.||+|++. +++.||||++.... ....+.+.+|+++++.++||||+++++++.+++..|+
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 4789999999999 99999999987 58999999997654 3345678889999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCC
Q 003301 733 VLEYMPNGSLEDYLYSN-NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~ 811 (832)
||||+++|+|.+++... ...+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||.+.....
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~ 180 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMIS 180 (389)
T ss_dssp EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECEE
T ss_pred EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeecc
Confidence 99999999999999765 235899999999999999999999 99999999999999999999999999999865422
Q ss_pred Ccc------cccccccccccccCCCCC
Q 003301 812 EES------MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 812 ~~~------~~~~~~~gt~~y~APE~l 832 (832)
... ......+||+.|+|||++
T Consensus 181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~ 207 (389)
T 3gni_B 181 HGQRQRVVHDFPKYSVKVLPWLSPEVL 207 (389)
T ss_dssp TTEECSCBCCCCTTCTTTGGGSCHHHH
T ss_pred ccccccccccccccccccccccCHHHH
Confidence 211 111224699999999963
No 164
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.3e-30 Score=299.99 Aligned_cols=435 Identities=17% Similarity=0.185 Sum_probs=236.4
Q ss_pred CCChhhhhcCCCceEEEccCCcccc---cCCCC------------ccCCCCccEEECcCCcccccCCCCCc-CCCcCceE
Q 003301 85 SLPDDMCRRLPLIKGLYMSNNKLTG---PIPNN------------IWQCKELIVISLAYNQFTERIPRGLG-NLTSLKTL 148 (832)
Q Consensus 85 ~lp~~~~~~l~~L~~L~l~~N~l~~---~~p~~------------l~~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L 148 (832)
..|..++.++++|++|++++|.... ..|.. ...+++|++|+|++|.+++..+..+. .+++|++|
T Consensus 56 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L 135 (594)
T 2p1m_B 56 VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVL 135 (594)
T ss_dssp SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEE
T ss_pred cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEE
Confidence 4566777788889999988875321 22221 12455666666666666554444443 45666666
Q ss_pred Eeccc-ccccc-cCccccCccccceecccccccccccCcccc----cCCcccEEEecCCCCCCCCCc-ccc--ccCCCCc
Q 003301 149 YLGFN-NLTGE-IPYEMGNLRNLEILGLQLNKLVGFVPTSIF----NLSAMKTLALPSNALSGSLPS-SID--LVRLPNL 219 (832)
Q Consensus 149 ~Ls~N-~i~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~p~-~~~--~~~l~~L 219 (832)
+|++| .++.. ++..+.++++|++|++++|.+++..+.++. .+++|++|++++|. . .+.. .+. ...+++|
T Consensus 136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNL 213 (594)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTC
T ss_pred eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCC
Confidence 66666 34321 333334566666666666665543333332 34455555555554 1 1110 000 1123445
Q ss_pred cEEEccCC-ccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcE
Q 003301 220 EIISLAGN-NFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKL 298 (832)
Q Consensus 220 ~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~ 298 (832)
++|++++| .+.+ .+..+..+++|++|+++.+... ++.|.+.. ++..+.++++|+.
T Consensus 214 ~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~~~------l~~~l~~~~~L~~ 269 (594)
T 2p1m_B 214 KSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAE-----------------VRPDVYSG------LSVALSGCKELRC 269 (594)
T ss_dssp CEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCC-----------------CCHHHHHH------HHHHHHTCTTCCE
T ss_pred cEEecCCCCcHHH-HHHHHhcCCcceEcccccccCc-----------------cchhhHHH------HHHHHhcCCCccc
Confidence 55555544 2222 3333444444444443322110 11111211 1223455555555
Q ss_pred E-eccCCCCCCCCCCcccccccccceEEeecCcccccc-cccccCcCcccEEEeecCccccc-ccccccCCCCCceEEcc
Q 003301 299 L-DLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTI-PKEIGNLINLRELGLWGNELIGS-IPITFGKLQNLQGLDLV 375 (832)
Q Consensus 299 L-~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls 375 (832)
| .+.+... +.++..+..+. +|++|++++|.+++.. +..+..+++|++|++++| +... .+.....+++|++|+++
T Consensus 270 Ls~~~~~~~-~~l~~~~~~~~-~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 270 LSGFWDAVP-AYLPAVYSVCS-RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp EECCBTCCG-GGGGGGHHHHT-TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCCcccch-hhHHHHHHhhC-CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 5 2322211 12222222222 5566666555554322 223456677777777777 3322 22223346777777773
Q ss_pred ---------CCccCCCCchhhc-CCCCCcEEEecCCcCCCCCcccCC-CCCCCCeEeCC--C----CcCCCCCC-----c
Q 003301 376 ---------NNKLEGPIPNGLC-QLARLSVLYMDGNKLSGPIPPCIG-DLTSLRLLSLA--S----NELNSVIP-----S 433 (832)
Q Consensus 376 ---------~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~--~----N~l~~~~~-----~ 433 (832)
.+.+++.....+. .+++|++|.++.|.+++..+..+. .+++|+.|+++ + |.+++... .
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 3444433333333 367788887777777655444443 46778888887 3 45543221 1
Q ss_pred ccccCcccceeeecCCcccCCCcccccc-ccccceecccCcccCCccCCcc-ccccccceeecccccccccCCc-cccCC
Q 003301 434 TFWNLKDILSLNFSSNFLNGSLPEDIGN-LKVVVIIDLSRNNLSGDIPTAI-GGLMNLQDLSLRDNGLQGSIPK-SIGGL 510 (832)
Q Consensus 434 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l 510 (832)
.+..+++|++|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ .++++|+.|+|++|.+++..+. .+..+
T Consensus 427 l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence 255677888888876 566554555554 7888888888888876555555 6688899999999988654443 34558
Q ss_pred CCCCeeccCCCcccccCchhh-hhhccCCeeeCCCCcccc
Q 003301 511 VSLESLDLSNNSLSGNIPTSM-EKLLYLKDLNLSFNKLEG 549 (832)
Q Consensus 511 ~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~l~l~~N~l~~ 549 (832)
++|+.|++++|+++......+ ..++.|+...+..+.-..
T Consensus 506 ~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 506 ETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp GGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred CCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 889999999998865444444 456677666666554443
No 165
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.94 E-value=1.2e-27 Score=253.77 Aligned_cols=171 Identities=26% Similarity=0.470 Sum_probs=145.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEe-----cCCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecC--Ce
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSF-----LDGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNN--DF 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~ 729 (832)
.++|++.+.||+|+||.||+|++ .+++.||+|++.... ....+.+.+|++++++++||||+++++++... ..
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 99 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 99 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence 35689999999999999999984 358899999987543 33457889999999999999999999999876 66
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
.|+||||+++++|.+++......+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+|||.|+..
T Consensus 100 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 176 (302)
T 4e5w_A 100 IKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAI 176 (302)
T ss_dssp EEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECcccccccc
Confidence 89999999999999999766667999999999999999999999 999999999999999999999999999999877
Q ss_pred CCCcc--cccccccccccccCCCC
Q 003301 810 SGEES--MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 810 ~~~~~--~~~~~~~gt~~y~APE~ 831 (832)
..... .......||+.|+|||+
T Consensus 177 ~~~~~~~~~~~~~~~~~~y~aPE~ 200 (302)
T 4e5w_A 177 ETDKEYYTVKDDRDSPVFWYAPEC 200 (302)
T ss_dssp CTTCCEEECCCCTTCCGGGCCHHH
T ss_pred cCCCcceeccCCCCCCccccCCee
Confidence 54432 12233568889999996
No 166
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.94 E-value=9e-28 Score=259.71 Aligned_cols=166 Identities=27% Similarity=0.407 Sum_probs=131.5
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.++|++.+.||+|+||.||+|++.. ++.||||++.... ..+.+.+|++++++++||||+++++++.+.+..|+||||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 129 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL 129 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence 4689999999999999999999874 7899999987553 236788899999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCcEEEeccccccccCCCc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK---DMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~DFg~a~~~~~~~ 813 (832)
+++++|.+++...+ .+++..+..++.|++.||+||| +.||+||||||+||+++. ++.+||+|||+++......
T Consensus 130 ~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~ 205 (349)
T 2w4o_A 130 VTGGELFDRIVEKG-YYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV 205 (349)
T ss_dssp CCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC---------
T ss_pred CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCccc
Confidence 99999999997654 6899999999999999999999 999999999999999975 8899999999998764332
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
. ....+||+.|+|||+
T Consensus 206 ~--~~~~~gt~~y~aPE~ 221 (349)
T 2w4o_A 206 L--MKTVCGTPGYCAPEI 221 (349)
T ss_dssp ---------CGGGSCHHH
T ss_pred c--cccccCCCCccCHHH
Confidence 2 233569999999996
No 167
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.94 E-value=7.7e-28 Score=260.36 Aligned_cols=172 Identities=24% Similarity=0.431 Sum_probs=147.8
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecC------CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCe
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLD------GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDF 729 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 729 (832)
..++|++.+.||+|+||.||+|++.+ ++.||||+++... ....+.+.+|++++++++||||+++++++.+.+.
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 124 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP 124 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence 45789999999999999999998853 4789999987553 3345788999999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHHhhCC-----------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCC
Q 003301 730 KALVLEYMPNGSLEDYLYSNN-----------------------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIK 786 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk 786 (832)
.|+||||+++|+|.+++.... ..+++..+..++.|++.||+||| ++||+|||||
T Consensus 125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlk 201 (343)
T 1luf_A 125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLA 201 (343)
T ss_dssp CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 999999999999999998642 46899999999999999999999 9999999999
Q ss_pred CCCeEeCCCCcEEEeccccccccCCCcc-cccccccccccccCCCC
Q 003301 787 PSNVLLDKDMVAHLSDFGIAKLLSGEES-MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 787 p~NIl~~~~~~~kl~DFg~a~~~~~~~~-~~~~~~~gt~~y~APE~ 831 (832)
|+||+++.++.+||+|||+++....... .......||+.|+|||+
T Consensus 202 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~ 247 (343)
T 1luf_A 202 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPES 247 (343)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHH
T ss_pred cceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhh
Confidence 9999999999999999999987643322 12233468999999996
No 168
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.94 E-value=7.6e-28 Score=272.56 Aligned_cols=171 Identities=25% Similarity=0.491 Sum_probs=149.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.++|++.+.||+|+||.||+|.+.. +..||||+++... ...+.+.+|++++++++||||+++++++...+..|+||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 4678899999999999999999875 8899999987543 3357899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccc
Q 003301 737 MPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESM 815 (832)
Q Consensus 737 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~ 815 (832)
+++|+|.++++... ..+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+|+........
T Consensus 298 ~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~ 374 (495)
T 1opk_A 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYT 374 (495)
T ss_dssp CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEE
T ss_pred cCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCCcee
Confidence 99999999998643 45899999999999999999999 999999999999999999999999999999877544333
Q ss_pred ccccccccccccCCCCC
Q 003301 816 KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 816 ~~~~~~gt~~y~APE~l 832 (832)
......+|+.|+|||++
T Consensus 375 ~~~~~~~~~~y~aPE~~ 391 (495)
T 1opk_A 375 AHAGAKFPIKWTAPESL 391 (495)
T ss_dssp CCTTCCCCGGGCCHHHH
T ss_pred ecCCCcCCcceeCHhHH
Confidence 33334577899999963
No 169
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.94 E-value=1.1e-27 Score=258.58 Aligned_cols=164 Identities=28% Similarity=0.396 Sum_probs=144.8
Q ss_pred cCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
+.|++.+.||+|+||.||+|++. +++.||||++.... ....+.+.+|++++++++||||+++++++.+++..|+||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 45888999999999999999874 58999999997543 233467889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
||++ |++.+++......+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+.....
T Consensus 134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-- 207 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-- 207 (348)
T ss_dssp ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB--
T ss_pred ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC--
Confidence 9996 6888888765567999999999999999999999 999999999999999999999999999999876432
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
....||+.|+|||+
T Consensus 208 ---~~~~gt~~y~aPE~ 221 (348)
T 1u5q_A 208 ---NSFVGTPYWMAPEV 221 (348)
T ss_dssp ---CCCCSCGGGCCHHH
T ss_pred ---CcccCCcceeCHhh
Confidence 23569999999996
No 170
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.94 E-value=1.8e-27 Score=278.36 Aligned_cols=171 Identities=23% Similarity=0.314 Sum_probs=149.3
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKA 731 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 731 (832)
..++|++.+.||+|+||+||+|++.. ++.||||+++... ....+.+..|.+++..+ +||+|+++++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 45789999999999999999999864 7889999997542 33456788899999988 7999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCC
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~ 811 (832)
+||||+++|+|.+++...+ .+++..+..++.||+.||+||| ++||+||||||+|||++.++.+||+|||+|+....
T Consensus 419 lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 494 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 494 (674)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred EEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence 9999999999999998754 6999999999999999999999 99999999999999999999999999999986433
Q ss_pred CcccccccccccccccCCCCC
Q 003301 812 EESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 812 ~~~~~~~~~~gt~~y~APE~l 832 (832)
... .....+||+.|||||++
T Consensus 495 ~~~-~~~~~~GT~~Y~APE~l 514 (674)
T 3pfq_A 495 DGV-TTKTFCGTPDYIAPEII 514 (674)
T ss_dssp TTC-CBCCCCSCSSSCCHHHH
T ss_pred CCc-ccccccCCCcccCHhhh
Confidence 332 23346799999999963
No 171
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.94 E-value=2.6e-27 Score=262.54 Aligned_cols=170 Identities=27% Similarity=0.404 Sum_probs=137.9
Q ss_pred HHhcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc--------hhhHHHHHHHHHHHhcCCCCceeeeceEEec
Q 003301 656 QATNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL--------EGALKSFDVECEVLKSVRHRNLVKIISSCTN 726 (832)
Q Consensus 656 ~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 726 (832)
...++|++.+.||+|+||.||+|.+.. ++.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 346889999999999999999998764 8999999987543 1122357899999999999999999999854
Q ss_pred CCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC---CcEEEecc
Q 003301 727 NDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKD---MVAHLSDF 803 (832)
Q Consensus 727 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~---~~~kl~DF 803 (832)
+..|+||||+++|+|.+++.... .+++..+..++.|++.||+||| ++||+||||||+||+++.+ +.+||+||
T Consensus 212 -~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~DF 286 (419)
T 3i6u_A 212 -EDYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDF 286 (419)
T ss_dssp -SEEEEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECCS
T ss_pred -CceEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEeec
Confidence 55799999999999999987654 6999999999999999999999 9999999999999999754 45999999
Q ss_pred ccccccCCCcccccccccccccccCCCCC
Q 003301 804 GIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 804 g~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
|+|+...... .....+||+.|+|||++
T Consensus 287 G~a~~~~~~~--~~~~~~gt~~y~aPE~~ 313 (419)
T 3i6u_A 287 GHSKILGETS--LMRTLCGTPTYLAPEVL 313 (419)
T ss_dssp STTTSCC-------------CTTCCTTTT
T ss_pred ccceecCCCc--cccccCCCCCccCceee
Confidence 9998765432 22345799999999974
No 172
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.94 E-value=2.4e-27 Score=252.21 Aligned_cols=172 Identities=24% Similarity=0.328 Sum_probs=141.9
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+.++++++||||+++++++..++..|+
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 3578999999999999999999986 58899999987543 2234678899999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+++++|.+++.... .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.+......
T Consensus 112 v~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 187 (309)
T 2h34_A 112 DMRLINGVDLAAMLRRQG-PLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTDE 187 (309)
T ss_dssp EEECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC-------
T ss_pred EEEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCcccccc
Confidence 999999999999998654 6899999999999999999999 999999999999999999999999999999876544
Q ss_pred cccccccccccccccCCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~l 832 (832)
.........||+.|+|||++
T Consensus 188 ~~~~~~~~~~~~~y~aPE~~ 207 (309)
T 2h34_A 188 KLTQLGNTVGTLYYMAPERF 207 (309)
T ss_dssp ---------CCGGGCCGGGT
T ss_pred ccccccccCCCcCccCHHHH
Confidence 33333345799999999974
No 173
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.94 E-value=4.4e-28 Score=255.36 Aligned_cols=172 Identities=26% Similarity=0.487 Sum_probs=151.9
Q ss_pred HHhcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 656 QATNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 656 ~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
...++|++.+.||+|+||.||+|.+.. +..||+|++.... ...+.+.+|++++++++||||+++++++.+++..|+||
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 88 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 88 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEE
Confidence 346789999999999999999999875 8899999987543 34578899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 735 EYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
||+++++|.+++.... ..+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.|.......
T Consensus 89 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 165 (288)
T 3kfa_A 89 EFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 165 (288)
T ss_dssp ECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS
T ss_pred EcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCc
Confidence 9999999999998643 35899999999999999999999 9999999999999999999999999999998876554
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
........+|+.|+|||+
T Consensus 166 ~~~~~~~~~~~~y~aPE~ 183 (288)
T 3kfa_A 166 YTAHAGAKFPIKWTAPES 183 (288)
T ss_dssp SEEETTEEECGGGCCHHH
T ss_pred cccccCCccccCcCChhh
Confidence 444444568889999996
No 174
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.94 E-value=6.1e-28 Score=252.96 Aligned_cols=170 Identities=24% Similarity=0.464 Sum_probs=147.3
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
..++|++.+.||+|+||.||+|.+.+++.||+|++.... ...+.+.+|++++++++||||+++++++.. +..|+||||
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~ 88 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEY 88 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEec
Confidence 457899999999999999999998888899999987543 234788999999999999999999999864 568999999
Q ss_pred CCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccc
Q 003301 737 MPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESM 815 (832)
Q Consensus 737 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~ 815 (832)
+++++|.+++.... ..+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.++........
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 165 (279)
T 1qpc_A 89 MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 165 (279)
T ss_dssp CTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEE
T ss_pred CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccc
Confidence 99999999997532 25899999999999999999999 999999999999999999999999999999887554433
Q ss_pred ccccccccccccCCCC
Q 003301 816 KQTLTLATIGYMAPGL 831 (832)
Q Consensus 816 ~~~~~~gt~~y~APE~ 831 (832)
......+++.|+|||+
T Consensus 166 ~~~~~~~~~~y~aPE~ 181 (279)
T 1qpc_A 166 AREGAKFPIKWTAPEA 181 (279)
T ss_dssp CCTTCCCCTTTSCHHH
T ss_pred cccCCCCccCccChhh
Confidence 3334457889999996
No 175
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=99.94 E-value=1.9e-27 Score=261.52 Aligned_cols=170 Identities=25% Similarity=0.401 Sum_probs=135.4
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCC-CCceeeeceEEecCC--ee
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVR-HRNLVKIISSCTNND--FK 730 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~--~~ 730 (832)
..++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.+++++. ||||+++++++...+ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 4678999999999999999999875 58999999986432 344567889999999997 999999999997544 68
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
|+|||||+ ++|.++++.. .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+...
T Consensus 87 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 160 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRAN--ILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFV 160 (388)
T ss_dssp EEEEECCS-EEHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEESS
T ss_pred EEEecccC-cCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCccccccc
Confidence 99999996 6999999874 5899999999999999999999 9999999999999999999999999999998653
Q ss_pred CCc--------------------ccccccccccccccCCCCC
Q 003301 811 GEE--------------------SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 811 ~~~--------------------~~~~~~~~gt~~y~APE~l 832 (832)
... ....+..+||+.|+|||++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~ 202 (388)
T 3oz6_A 161 NIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEIL 202 (388)
T ss_dssp SCCCCCCCGGGCCC---------------CCCGGGGCCHHHH
T ss_pred ccccccccccccccccccccccccccccCCcccCCcCCHHHh
Confidence 211 1122335799999999963
No 176
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.94 E-value=1.8e-27 Score=252.62 Aligned_cols=168 Identities=28% Similarity=0.497 Sum_probs=140.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
.++|++.+.||+|+||.||+|.+. ..+|+|+++... ....+.+.+|++++++++||||+++++++.. +..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-CcEEEEEe
Confidence 478999999999999999999863 368999876432 3445788999999999999999999998754 55799999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc-c
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE-S 814 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~-~ 814 (832)
|+++++|.+++......+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+...... .
T Consensus 112 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~~ 188 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC-------
T ss_pred cCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCChhhEEEcCCCCEEEccCCCceeccccccc
Confidence 99999999999877778999999999999999999999 9999999999999999999999999999998654321 2
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
.......||+.|+|||+
T Consensus 189 ~~~~~~~gt~~y~aPE~ 205 (307)
T 3lb7_A 189 QQVEQPTGSVLWMAPEV 205 (307)
T ss_dssp -----CCCCTTSCCHHH
T ss_pred ccccCCCCCcceECcce
Confidence 22233569999999996
No 177
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.94 E-value=2.2e-27 Score=251.77 Aligned_cols=168 Identities=29% Similarity=0.481 Sum_probs=139.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhc--CCCCceeeeceEEec----CCeeE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKS--VRHRNLVKIISSCTN----NDFKA 731 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~----~~~~~ 731 (832)
.++|++.+.||+|+||+||+|++ +++.||||++.... .+.+.+|.+++.. ++||||+++++++.. ....|
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD---EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc---chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 46899999999999999999998 79999999987543 2455667776665 799999999998654 34689
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEecCCCCCCeEeCCCCcEEEeccccc
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFG-----YSNPVVHCDIKPSNVLLDKDMVAHLSDFGIA 806 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-----~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a 806 (832)
+||||+++|+|.++++.. .+++..+..++.|++.|++|||.. ++++|+||||||+||+++.++.+||+|||+|
T Consensus 83 lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a 160 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA 160 (301)
T ss_dssp EEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCe
Confidence 999999999999999654 589999999999999999999932 2679999999999999999999999999999
Q ss_pred cccCCCcccc---cccccccccccCCCC
Q 003301 807 KLLSGEESMK---QTLTLATIGYMAPGL 831 (832)
Q Consensus 807 ~~~~~~~~~~---~~~~~gt~~y~APE~ 831 (832)
+......... .....||+.|+|||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 188 (301)
T 3q4u_A 161 VMHSQSTNQLDVGNNPRVGTKRYMAPEV 188 (301)
T ss_dssp EEEETTTTEEECCCCCCCCCGGGCCHHH
T ss_pred eecccccccccccccccccccceeChhh
Confidence 8654433221 223479999999996
No 178
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.94 E-value=2.2e-27 Score=253.02 Aligned_cols=169 Identities=30% Similarity=0.401 Sum_probs=141.9
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccch--hhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLE--GALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.++|++.+.||+|+||.||+|.+.. ++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 3689999999999999999999864 89999999865432 33467889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
||++++++.+++...+ .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.|+.......
T Consensus 82 e~~~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 157 (311)
T 4agu_A 82 EYCDHTVLHELDRYQR-GVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD 157 (311)
T ss_dssp ECCSEEHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred EeCCCchHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc
Confidence 9999999998876543 6899999999999999999999 99999999999999999999999999999987654332
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
. .....||+.|+|||+
T Consensus 158 ~-~~~~~~~~~y~aPE~ 173 (311)
T 4agu_A 158 Y-YDDEVATRWYRSPEL 173 (311)
T ss_dssp ---------GGGCCHHH
T ss_pred c-cCCCcCCccccChHH
Confidence 2 233569999999996
No 179
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.94 E-value=1.6e-27 Score=255.84 Aligned_cols=171 Identities=27% Similarity=0.418 Sum_probs=149.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEe-----cCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEe--cCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSF-----LDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCT--NNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~ 730 (832)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++. .....
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 36899999999999999999984 358899999998776666678999999999999999999999886 45678
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
|+||||+++++|.+++......+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||.++...
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 178 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLP 178 (327)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred EEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccceecc
Confidence 9999999999999999875556999999999999999999999 9999999999999999999999999999998765
Q ss_pred CCccc--ccccccccccccCCCC
Q 003301 811 GEESM--KQTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~--~~~~~~gt~~y~APE~ 831 (832)
..... ......||+.|+|||+
T Consensus 179 ~~~~~~~~~~~~~~~~~y~aPE~ 201 (327)
T 3lxl_A 179 LDKDYYVVREPGQSPIFWYAPES 201 (327)
T ss_dssp TTCSEEECSSCCCSCGGGSCHHH
T ss_pred cCCccceeeccCCccccccCHHH
Confidence 43322 2233468889999996
No 180
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.7e-26 Score=241.49 Aligned_cols=225 Identities=23% Similarity=0.241 Sum_probs=190.7
Q ss_pred EeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCc
Q 003301 299 LDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNK 378 (832)
Q Consensus 299 L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 378 (832)
.+.++..+. .+|..+. .++++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++|++|+|++|+
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 444444444 3444432 267788888888877777788889999999999999998888889999999999999999
Q ss_pred cCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCC-CCcccccCcccceeeecCCcccCCCcc
Q 003301 379 LEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSV-IPSTFWNLKDILSLNFSSNFLNGSLPE 457 (832)
Q Consensus 379 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 457 (832)
+++..+..|..+++|++|++++|.+++..+..++.+++|++|++++|.+++. .|..|..+++|++|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9987778899999999999999999987777899999999999999999885 488999999999999999999988788
Q ss_pred ccccccccc----eecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCc
Q 003301 458 DIGNLKVVV----IIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIP 528 (832)
Q Consensus 458 ~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 528 (832)
.+..+..|+ .|++++|++++..+..+.. .+|+.|+|++|++++..+..|+.+++|+.|+|++|++++..|
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 888888887 8999999999766665554 489999999999998777788999999999999999998765
No 181
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.94 E-value=2.6e-27 Score=253.46 Aligned_cols=168 Identities=25% Similarity=0.402 Sum_probs=148.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchh------hHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEG------ALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
.++|++.+.||+|+||.||+|.+. +++.||+|++...... ..+.+.+|++++++++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 467999999999999999999986 4899999998754321 356789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC----cEEEeccccc
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM----VAHLSDFGIA 806 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~----~~kl~DFg~a 806 (832)
|+||||+++++|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++.++ .+||+|||.+
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~ 166 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (321)
T ss_dssp EEEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCccc
Confidence 99999999999999997654 6899999999999999999999 99999999999999999888 7999999999
Q ss_pred cccCCCcccccccccccccccCCCC
Q 003301 807 KLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 807 ~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+....... .....||+.|+|||+
T Consensus 167 ~~~~~~~~--~~~~~gt~~y~aPE~ 189 (321)
T 2a2a_A 167 HEIEDGVE--FKNIFGTPEFVAPEI 189 (321)
T ss_dssp EECCTTCC--CCCCCSCGGGCCHHH
T ss_pred eecCcccc--ccccCCCCCccCccc
Confidence 87654332 233569999999996
No 182
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.94 E-value=2.6e-27 Score=253.08 Aligned_cols=170 Identities=26% Similarity=0.373 Sum_probs=142.4
Q ss_pred hcCCCCC-CeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNAS-NLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.+.|++. +.||+|+||.||+|.+. +++.||||++........+.+.+|++++.++ +||||+++++++.+++..|+||
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 4678884 78999999999999875 5899999999876555567889999999885 7999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc---EEEeccccccccCC
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV---AHLSDFGIAKLLSG 811 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~---~kl~DFg~a~~~~~ 811 (832)
||+++++|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++.++. +||+|||+++....
T Consensus 91 e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 166 (316)
T 2ac3_A 91 EKMRGGSILSHIHKRR-HFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL 166 (316)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred EcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence 9999999999997654 6899999999999999999999 999999999999999988775 99999999976532
Q ss_pred Ccc------cccccccccccccCCCC
Q 003301 812 EES------MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 812 ~~~------~~~~~~~gt~~y~APE~ 831 (832)
... ......+||+.|+|||+
T Consensus 167 ~~~~~~~~~~~~~~~~gt~~y~aPE~ 192 (316)
T 2ac3_A 167 NGDCSPISTPELLTPCGSAEYMAPEV 192 (316)
T ss_dssp ---------------CCSGGGCCHHH
T ss_pred CCccccccccccccccCCcCccChHH
Confidence 211 11123469999999996
No 183
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.94 E-value=2.2e-27 Score=255.40 Aligned_cols=167 Identities=26% Similarity=0.431 Sum_probs=142.8
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 734 (832)
..++|++.+.||+|+||.||+|.+. +++.||||++..... ...+|++++.++ +||||+++++++.+++..|+||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 4578999999999999999999886 488999999976543 234688888887 7999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC----CcEEEeccccccccC
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKD----MVAHLSDFGIAKLLS 810 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~----~~~kl~DFg~a~~~~ 810 (832)
||+++|+|.+++...+ .+++..+..++.|++.|++||| ++||+||||||+||++..+ +.+||+|||+|+...
T Consensus 96 E~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~ 171 (342)
T 2qr7_A 96 ELMKGGELLDKILRQK-FFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR 171 (342)
T ss_dssp CCCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred eCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence 9999999999997654 6999999999999999999999 9999999999999998433 359999999998764
Q ss_pred CCcccccccccccccccCCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~l 832 (832)
..... ....+||+.|+|||++
T Consensus 172 ~~~~~-~~~~~gt~~y~aPE~~ 192 (342)
T 2qr7_A 172 AENGL-LMTPCYTANFVAPEVL 192 (342)
T ss_dssp CTTCC-BCCSSCCSSCCCHHHH
T ss_pred CCCCc-eeccCCCccccCHHHh
Confidence 43322 2335799999999963
No 184
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.94 E-value=2.3e-27 Score=248.61 Aligned_cols=167 Identities=29% Similarity=0.451 Sum_probs=144.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+.. ++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 4789999999999999999998864 7789999986543 22346788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++++|.+++.... .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||++.......
T Consensus 88 ~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~ 163 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR 163 (279)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC----
T ss_pred EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCccc
Confidence 99999999999997654 6899999999999999999999 9999999999999999999999999999986543322
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
.....||+.|+|||+
T Consensus 164 ---~~~~~~~~~y~aPE~ 178 (279)
T 3fdn_A 164 ---RTDLCGTLDYLPPEM 178 (279)
T ss_dssp -------CCCCTTCCHHH
T ss_pred ---ccccCCCCCccCHhH
Confidence 233569999999996
No 185
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.94 E-value=6.7e-28 Score=262.64 Aligned_cols=171 Identities=27% Similarity=0.426 Sum_probs=144.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
.++|++.+.||+|+||+||+|++. +++.||||+++... ......+.+|+.++++++||||+++++++.+.+..
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 467899999999999999999853 36789999986442 33446788999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCC------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---cEEEe
Q 003301 731 ALVLEYMPNGSLEDYLYSNN------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM---VAHLS 801 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~---~~kl~ 801 (832)
|+||||+++|+|.++++..+ ..+++..+..++.|++.||+||| ++||+||||||+||+++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEEC
Confidence 99999999999999997643 34899999999999999999999 99999999999999999555 59999
Q ss_pred ccccccccCCCcc-cccccccccccccCCCC
Q 003301 802 DFGIAKLLSGEES-MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 802 DFg~a~~~~~~~~-~~~~~~~gt~~y~APE~ 831 (832)
|||+|+....... .......||+.|+|||+
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~ 257 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEA 257 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHH
T ss_pred CCccccccccccccccCCCcCCcccEECHHH
Confidence 9999975422211 12223468999999996
No 186
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.94 E-value=2.4e-27 Score=247.85 Aligned_cols=167 Identities=23% Similarity=0.455 Sum_probs=128.9
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEE
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEE
Confidence 368999999999999999999875 58999999987543 23356788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+ ++++.+++.... .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.|.......
T Consensus 92 ~e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 166 (275)
T 2eue_A 92 IEYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN 166 (275)
T ss_dssp EECC-CEEHHHHHHTSS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCSSCC-------
T ss_pred ehhc-CCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCEEEeecccceeccCcc
Confidence 9999 778888887654 6999999999999999999999 9999999999999999999999999999998764433
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
. .....||+.|+|||+
T Consensus 167 ~--~~~~~~t~~y~aPE~ 182 (275)
T 2eue_A 167 F--LKTSCGSPNYAAPEV 182 (275)
T ss_dssp ----------CTTCCHHH
T ss_pred c--ccCCCCCcCcCCcee
Confidence 2 223469999999996
No 187
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.94 E-value=3.8e-27 Score=256.44 Aligned_cols=173 Identities=29% Similarity=0.477 Sum_probs=150.9
Q ss_pred HHHHHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--------hhhHHHHHHHHHHHhcC-CCCceeeece
Q 003301 653 ELLQATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--------EGALKSFDVECEVLKSV-RHRNLVKIIS 722 (832)
Q Consensus 653 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l-~h~niv~l~~ 722 (832)
......++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+++++++ +||||+++++
T Consensus 88 ~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~ 167 (365)
T 2y7j_A 88 AAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLID 167 (365)
T ss_dssp HHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred hhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence 33455678999999999999999999986 59999999987543 12245678899999999 7999999999
Q ss_pred EEecCCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEec
Q 003301 723 SCTNNDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSD 802 (832)
Q Consensus 723 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 802 (832)
++...+..|+||||+++++|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|
T Consensus 168 ~~~~~~~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~D 243 (365)
T 2y7j_A 168 SYESSSFMFLVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSD 243 (365)
T ss_dssp EEEBSSEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECC
T ss_pred EEeeCCEEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEe
Confidence 9999999999999999999999997643 6899999999999999999999 99999999999999999999999999
Q ss_pred cccccccCCCcccccccccccccccCCCC
Q 003301 803 FGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 803 Fg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
||++........ ....+||+.|+|||+
T Consensus 244 fG~~~~~~~~~~--~~~~~gt~~y~aPE~ 270 (365)
T 2y7j_A 244 FGFSCHLEPGEK--LRELCGTPGYLAPEI 270 (365)
T ss_dssp CTTCEECCTTCC--BCCCCSCGGGCCHHH
T ss_pred cCcccccCCCcc--cccCCCCCCccChhh
Confidence 999987754332 233579999999996
No 188
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.94 E-value=4.4e-27 Score=248.42 Aligned_cols=169 Identities=24% Similarity=0.397 Sum_probs=148.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+.+ ++.||+|++.... ....+.+.+|+++++.++||||+++++++.+++..|+|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 4689999999999999999999864 7889999987553 33456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++++|.+++.... .+++..+..++.|++.|++||| +.|++||||||+||+++.++.+||+|||.++......
T Consensus 94 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 169 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169 (294)
T ss_dssp EECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence 99999999999987654 6899999999999999999999 9999999999999999999999999999998764332
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
. ......||+.|+|||+
T Consensus 170 ~-~~~~~~~~~~y~aPE~ 186 (294)
T 2rku_A 170 E-RKKVLCGTPNYIAPEV 186 (294)
T ss_dssp C-CBCCCCSCCSSCCHHH
T ss_pred c-ccccccCCCCcCCcch
Confidence 2 2233569999999996
No 189
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.94 E-value=2.2e-27 Score=249.42 Aligned_cols=169 Identities=30% Similarity=0.427 Sum_probs=143.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
.++|.+.+.||+|+||.||+|.+. ++..||+|++.... ....+.+.+|++++++++||||+++++++.+.+..|+|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 367999999999999999999885 48899999987654 3345788999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCcEEEecccccccc
Q 003301 736 YMPNGSLEDYLYSN---NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL---DKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 736 ~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~DFg~a~~~ 809 (832)
|+++++|.+++... ...+++..+..++.|++.||+||| +.||+||||||+||++ +.++.+||+|||.|+..
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~ 177 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence 99999999988542 346999999999999999999999 9999999999999999 45688999999999876
Q ss_pred CCCcccccccccccccccCCCC
Q 003301 810 SGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 810 ~~~~~~~~~~~~gt~~y~APE~ 831 (832)
..... .....||+.|+|||+
T Consensus 178 ~~~~~--~~~~~~t~~y~aPE~ 197 (285)
T 3is5_A 178 KSDEH--STNAAGTALYMAPEV 197 (285)
T ss_dssp -----------CTTGGGCCHHH
T ss_pred CCccc--CcCcccccCcCChHH
Confidence 44322 233569999999996
No 190
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=8e-28 Score=271.58 Aligned_cols=235 Identities=18% Similarity=0.210 Sum_probs=130.9
Q ss_pred cCcEEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEE
Q 003301 46 ELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVIS 125 (832)
Q Consensus 46 ~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~ 125 (832)
+|++|+|++|.+++..|..++.+++| ++|+|++|.+++..| +..+++|++|+|++|.|++.. ..++|++|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKL-ELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTC-CEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCC-CEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 44444444444443333344444444 444444444443222 224555555555555555322 125566666
Q ss_pred CcCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceecccccccccccCcccc-cCCcccEEEecCCCCC
Q 003301 126 LAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLNKLVGFVPTSIF-NLSAMKTLALPSNALS 204 (832)
Q Consensus 126 Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~ 204 (832)
+++|.+++..+. .+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..+. .+++|++|+|++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 666666544433 234566666666666655555666666666666666666665555554 5666666666666665
Q ss_pred CCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCcc
Q 003301 205 GSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSEL 284 (832)
Q Consensus 205 ~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 284 (832)
+. |. ...+++|++|+|++|++++++|. |..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+...
T Consensus 183 ~~-~~---~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~---- 252 (487)
T 3oja_A 183 DV-KG---QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG---- 252 (487)
T ss_dssp EE-EC---CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH----
T ss_pred cc-cc---cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc----
Confidence 33 22 12466666666766666655444 5666777777777777774 455566677777777777776520
Q ss_pred ccccccccCCCCcEEecc
Q 003301 285 SFLSSWANCKNLKLLDLS 302 (832)
Q Consensus 285 ~~~~~~~~l~~L~~L~L~ 302 (832)
..+..+..++.|+.++++
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 233445566666666665
No 191
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.94 E-value=4.1e-27 Score=253.46 Aligned_cols=169 Identities=24% Similarity=0.397 Sum_probs=148.9
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+.+ ++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 4689999999999999999999865 7889999987543 33456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++++|.+++.... .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||.++......
T Consensus 120 ~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 195 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195 (335)
T ss_dssp ECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence 99999999999987653 6899999999999999999999 9999999999999999999999999999998765333
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
. ......||+.|+|||+
T Consensus 196 ~-~~~~~~gt~~y~aPE~ 212 (335)
T 2owb_A 196 E-RKKVLCGTPNYIAPEV 212 (335)
T ss_dssp C-CBCCCCSCCSSCCHHH
T ss_pred c-cccccCCCccccCHHH
Confidence 2 2233569999999996
No 192
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.94 E-value=8.6e-28 Score=257.44 Aligned_cols=168 Identities=26% Similarity=0.396 Sum_probs=139.1
Q ss_pred cCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchh-hHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEG-ALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
++|++.+.||+|+||.||+|.+. +++.||+|++...... ....+.+|++++++++||||+++++++.+++..|+||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57999999999999999999986 5899999998754322 122455799999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcccc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMK 816 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~ 816 (832)
++ |+|.+++...+..+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||.|+....... .
T Consensus 82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~-~ 156 (324)
T 3mtl_A 82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK-T 156 (324)
T ss_dssp CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCcc-c
Confidence 96 6999999887767999999999999999999999 99999999999999999999999999999986543322 2
Q ss_pred cccccccccccCCCC
Q 003301 817 QTLTLATIGYMAPGL 831 (832)
Q Consensus 817 ~~~~~gt~~y~APE~ 831 (832)
.....||+.|+|||+
T Consensus 157 ~~~~~~t~~y~aPE~ 171 (324)
T 3mtl_A 157 YDNEVVTLWYRPPDI 171 (324)
T ss_dssp ------CGGGCCHHH
T ss_pred cccccCcccccChhh
Confidence 233568999999996
No 193
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.94 E-value=5.1e-27 Score=246.64 Aligned_cols=168 Identities=24% Similarity=0.456 Sum_probs=147.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.++|++.+.||+|+||.||+|.+.. ++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..|+||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 5789999999999999999998864 8999999997553 334567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc---EEEeccccccccCC
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV---AHLSDFGIAKLLSG 811 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~---~kl~DFg~a~~~~~ 811 (832)
||+++++|.+++.... .+++..+..++.|++.|++||| +.||+||||||+||+++.++. +||+|||.+.....
T Consensus 85 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 160 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 160 (284)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred ecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence 9999999999887654 6899999999999999999999 999999999999999986655 99999999987654
Q ss_pred CcccccccccccccccCCCC
Q 003301 812 EESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 812 ~~~~~~~~~~gt~~y~APE~ 831 (832)
... .....||+.|+|||+
T Consensus 161 ~~~--~~~~~~~~~y~aPE~ 178 (284)
T 3kk8_A 161 SEA--WHGFAGTPGYLSPEV 178 (284)
T ss_dssp SCB--CCCSCSCGGGCCHHH
T ss_pred Ccc--ccCCCCCcCCcCchh
Confidence 332 233569999999996
No 194
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.94 E-value=1.1e-27 Score=259.34 Aligned_cols=176 Identities=24% Similarity=0.366 Sum_probs=145.2
Q ss_pred HHHHHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-----hhhHHHHHHHHHHHhcCCCCceeeeceEEec
Q 003301 653 ELLQATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-----EGALKSFDVECEVLKSVRHRNLVKIISSCTN 726 (832)
Q Consensus 653 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 726 (832)
++....++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+
T Consensus 20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~ 99 (345)
T 3hko_A 20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED 99 (345)
T ss_dssp CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence 45567789999999999999999999885 48899999987542 3445788999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCHHHHHhhC---------------------------------------CCCCCHHHHHHHHHHHHH
Q 003301 727 NDFKALVLEYMPNGSLEDYLYSN---------------------------------------NFSFDILQRLSVIIDVAL 767 (832)
Q Consensus 727 ~~~~~lv~e~~~~g~L~~~l~~~---------------------------------------~~~~~~~~~~~i~~~i~~ 767 (832)
.+..|+||||+++|+|.+++... ...+++..+..++.|++.
T Consensus 100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~ 179 (345)
T 3hko_A 100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS 179 (345)
T ss_dssp SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999998521 111356778899999999
Q ss_pred HHHHHhcCCCCCeEecCCCCCCeEeCCCC--cEEEeccccccccCCCc---ccccccccccccccCCCC
Q 003301 768 ALEYLHFGYSNPVVHCDIKPSNVLLDKDM--VAHLSDFGIAKLLSGEE---SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 768 ~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~--~~kl~DFg~a~~~~~~~---~~~~~~~~gt~~y~APE~ 831 (832)
|++||| +.||+||||||+||+++.++ .+||+|||.|+...... ........||+.|+|||+
T Consensus 180 ~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 245 (345)
T 3hko_A 180 ALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEV 245 (345)
T ss_dssp HHHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHH
T ss_pred HHHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchh
Confidence 999999 99999999999999998776 89999999998653321 112334579999999996
No 195
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4e-26 Score=237.58 Aligned_cols=207 Identities=25% Similarity=0.309 Sum_probs=148.3
Q ss_pred cccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCC
Q 003301 344 NLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLA 423 (832)
Q Consensus 344 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 423 (832)
+.+.+++++++++. +|..+. ++|++|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 34566666666653 333332 456666666666665555566666777777777777765555556677777777777
Q ss_pred CCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccC
Q 003301 424 SNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSI 503 (832)
Q Consensus 424 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 503 (832)
+|+++++.+..|..+++|++|++++|++++..+..|+.+++|++|+|++|++++..+..|.++++|+.|+|++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77777766666777777777777777777766667777777777888888777666666778888888888888888766
Q ss_pred CccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCC
Q 003301 504 PKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 504 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.|.++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 66788888888888888888876666777888888888888888877753
No 196
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.94 E-value=2.7e-27 Score=252.69 Aligned_cols=171 Identities=25% Similarity=0.423 Sum_probs=147.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEec------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 578999999999999999999863 35789999987543 34457788999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCCC-----------------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNF-----------------------SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKP 787 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~-----------------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp 787 (832)
|+||||+++++|.+++..... .+++..+..++.|++.||+||| ++||+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccch
Confidence 999999999999999986432 3789999999999999999999 99999999999
Q ss_pred CCeEeCCCCcEEEeccccccccCCCccc-ccccccccccccCCCC
Q 003301 788 SNVLLDKDMVAHLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 788 ~NIl~~~~~~~kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
+||+++.++.+||+|||+|+........ ......+|+.|+|||+
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 223 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIES 223 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHH
T ss_pred heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhh
Confidence 9999999999999999999876543322 2233457889999995
No 197
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.1e-30 Score=300.19 Aligned_cols=441 Identities=14% Similarity=0.140 Sum_probs=270.8
Q ss_pred CcEEEccCCcCCCCCCCcccCcccccccccccccccccCC---C-----------hhhhhcCCCceEEEccCCcccccCC
Q 003301 47 LELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSL---P-----------DDMCRRLPLIKGLYMSNNKLTGPIP 112 (832)
Q Consensus 47 L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~l---p-----------~~~~~~l~~L~~L~l~~N~l~~~~p 112 (832)
-+.++++++... ..+..+..++++ +.|+++++.....+ | ..+...+++|++|+|++|.+++..+
T Consensus 45 ~~~l~~~~~~~~-~~~~~~~~~~~L-~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~ 122 (594)
T 2p1m_B 45 RRKVFIGNCYAV-SPATVIRRFPKV-RSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL 122 (594)
T ss_dssp CCEEEESSTTSS-CHHHHHHHCTTC-CEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH
T ss_pred ceEEeecccccc-CHHHHHhhCCCc-eEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHH
Confidence 346777665433 222334566777 99999987532122 2 2334578999999999999987766
Q ss_pred CCcc-CCCCccEEECcCC-ccccc-CCCCCcCCCcCceEEecccccccccCcccc----Cccccceecccccc--ccc-c
Q 003301 113 NNIW-QCKELIVISLAYN-QFTER-IPRGLGNLTSLKTLYLGFNNLTGEIPYEMG----NLRNLEILGLQLNK--LVG-F 182 (832)
Q Consensus 113 ~~l~-~l~~L~~L~Ls~n-~i~~~-~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~----~l~~L~~L~L~~N~--l~~-~ 182 (832)
..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|++++|. +.. .
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence 6665 6899999999999 56532 344455789999999999998865544443 67799999999997 221 1
Q ss_pred cCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCc-------cccccCCcccCCCCccEE-EcCCCcCc
Q 003301 183 VPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNN-------FSGIIPSFIFNASKLSVL-ELGENSFS 254 (832)
Q Consensus 183 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L-~L~~N~i~ 254 (832)
++..+.++++|++|++++|...+.+|.. +..+++|++|+++.+. +.+.. ..+.++++|+.| .+.+....
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~l~~~~~L~~Ls~~~~~~~~ 279 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKLATL--LQRAPQLEELGTGGYTAEVRPDVYSGLS-VALSGCKELRCLSGFWDAVPA 279 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHHHHH--HHHCTTCSEEECSBCCCCCCHHHHHHHH-HHHHTCTTCCEEECCBTCCGG
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHHHHH--HhcCCcceEcccccccCccchhhHHHHH-HHHhcCCCcccccCCcccchh
Confidence 1122345799999999999433234443 3578999999966543 33332 245666777776 33332221
Q ss_pred ccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCccccc
Q 003301 255 GFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGT 334 (832)
Q Consensus 255 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 334 (832)
..+..+..+++|++|++++|.++.. .+...+..+++|++|++++| +.+ ..
T Consensus 280 -~l~~~~~~~~~L~~L~L~~~~l~~~----~l~~~~~~~~~L~~L~l~~~-~~~------------------------~~ 329 (594)
T 2p1m_B 280 -YLPAVYSVCSRLTTLNLSYATVQSY----DLVKLLCQCPKLQRLWVLDY-IED------------------------AG 329 (594)
T ss_dssp -GGGGGHHHHTTCCEEECTTCCCCHH----HHHHHHTTCTTCCEEEEEGG-GHH------------------------HH
T ss_pred -hHHHHHHhhCCCCEEEccCCCCCHH----HHHHHHhcCCCcCEEeCcCc-cCH------------------------HH
Confidence 2333334556666666666654320 11112344555555555554 221 11
Q ss_pred ccccccCcCcccEEEeec---------Cccccccccccc-CCCCCceEEccCCccCCCCchhhc-CCCCCcEEEec--C-
Q 003301 335 IPKEIGNLINLRELGLWG---------NELIGSIPITFG-KLQNLQGLDLVNNKLEGPIPNGLC-QLARLSVLYMD--G- 400 (832)
Q Consensus 335 ~~~~~~~l~~L~~L~L~~---------N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~--~- 400 (832)
++.....+++|++|++++ +.+++.....+. .+++|+.|+++.|++++..+..+. .+++|+.|+++ +
T Consensus 330 l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 330 LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESST
T ss_pred HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccC
Confidence 112222355566666622 344432222222 366777777777776655444444 36677777777 3
Q ss_pred ---CcCCCCC-----cccCCCCCCCCeEeCCCCcCCCCCCccccc-CcccceeeecCCcccCCCcccc-ccccccceecc
Q 003301 401 ---NKLSGPI-----PPCIGDLTSLRLLSLASNELNSVIPSTFWN-LKDILSLNFSSNFLNGSLPEDI-GNLKVVVIIDL 470 (832)
Q Consensus 401 ---N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L 470 (832)
|.+++.. +..+..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred CCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence 4454221 11245667788888866 555544444444 6778888888888765544444 56788888888
Q ss_pred cCcccCCccCC-ccccccccceeecccccccccCCccc-cCCCCCCeeccCCCcc
Q 003301 471 SRNNLSGDIPT-AIGGLMNLQDLSLRDNGLQGSIPKSI-GGLVSLESLDLSNNSL 523 (832)
Q Consensus 471 s~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l 523 (832)
++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.-
T Consensus 489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 489 RDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp ESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred cCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 88888654443 34558889999999998864444444 4567777767666543
No 198
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.94 E-value=6.9e-27 Score=246.05 Aligned_cols=166 Identities=29% Similarity=0.502 Sum_probs=143.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchh-------hHHHHHHHHHHHhcCCCCceeeeceEEecCCe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEG-------ALKSFDVECEVLKSVRHRNLVKIISSCTNNDF 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 729 (832)
.++|++.+.||+|+||.||+|++. +++.||+|++...... ..+.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 478999999999999999999885 5899999998644321 1267889999999999999999999987665
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeEeCCCCc-----EEEec
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNP--VVHCDIKPSNVLLDKDMV-----AHLSD 802 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~~~~~-----~kl~D 802 (832)
++||||+++++|.+++......+++..+..++.|++.|++||| +.| |+||||||+||+++.++. +||+|
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D 172 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVAD 172 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred -eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence 7999999999999999877667999999999999999999999 899 999999999999988776 99999
Q ss_pred cccccccCCCcccccccccccccccCCCCC
Q 003301 803 FGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 803 Fg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
||+|+..... .....||+.|+|||++
T Consensus 173 fg~~~~~~~~----~~~~~g~~~y~aPE~~ 198 (287)
T 4f0f_A 173 FGLSQQSVHS----VSGLLGNFQWMAPETI 198 (287)
T ss_dssp CTTCBCCSSC----EECCCCCCTTSCGGGS
T ss_pred CCcccccccc----ccccCCCccccCchhh
Confidence 9999854332 2335699999999974
No 199
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.1e-27 Score=261.65 Aligned_cols=169 Identities=31% Similarity=0.460 Sum_probs=146.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCC--eeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNND--FKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv 733 (832)
.++|++.++||+|+||.||+|++.. ++.||||++.... ....+.+.+|++++++++||||+++++++...+ ..|+|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 4679999999999999999999865 8999999997543 334567889999999999999999999988655 78999
Q ss_pred EecCCCCCHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe----CCCCcEEEecccccc
Q 003301 734 LEYMPNGSLEDYLYSNN--FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL----DKDMVAHLSDFGIAK 807 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~----~~~~~~kl~DFg~a~ 807 (832)
|||+++|+|.++++... ..+++..+..++.|++.||+||| +.||+||||||+||++ +.++.+||+|||.|+
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 99999999999997643 23899999999999999999999 9999999999999999 778889999999998
Q ss_pred ccCCCcccccccccccccccCCCC
Q 003301 808 LLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 808 ~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
....... ....+||+.|+|||+
T Consensus 165 ~~~~~~~--~~~~~gt~~y~aPE~ 186 (396)
T 4eut_A 165 ELEDDEQ--FVSLYGTEEYLHPDM 186 (396)
T ss_dssp ECCCGGG--SSCSSSCCTTCCHHH
T ss_pred EccCCCc--cccccCCccccCHHH
Confidence 7654432 233569999999996
No 200
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=1.3e-27 Score=258.46 Aligned_cols=171 Identities=28% Similarity=0.446 Sum_probs=141.9
Q ss_pred HHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch-----hhHHHHHHHHHHHhcCCCCceeeeceEEecCCe
Q 003301 656 QATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE-----GALKSFDVECEVLKSVRHRNLVKIISSCTNNDF 729 (832)
Q Consensus 656 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 729 (832)
...++|++.+.||+|+||.||+|.+. +|+.||||++..... ...+.+.+|++++++++||||+++++++.+.+.
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN 86 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence 44678999999999999999999986 489999999864321 123467899999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
.|+||||+++ +|.+++......+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+..
T Consensus 87 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~ 162 (346)
T 1ua2_A 87 ISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSF 162 (346)
T ss_dssp CEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred eEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccceec
Confidence 9999999965 999999877667899999999999999999999 999999999999999999999999999999876
Q ss_pred CCCcccccccccccccccCCCC
Q 003301 810 SGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 810 ~~~~~~~~~~~~gt~~y~APE~ 831 (832)
..... .....+||+.|+|||+
T Consensus 163 ~~~~~-~~~~~~~t~~y~aPE~ 183 (346)
T 1ua2_A 163 GSPNR-AYTHQVVTRWYRAPEL 183 (346)
T ss_dssp TSCCC-CCCCSCCCCTTCCHHH
T ss_pred cCCcc-cCCcccccccccCchH
Confidence 44332 2233579999999996
No 201
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=99.94 E-value=2.2e-27 Score=266.14 Aligned_cols=166 Identities=25% Similarity=0.325 Sum_probs=137.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecC------C
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNN------D 728 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~ 728 (832)
.++|++.+.||+|+||+||+|.+. +++.||||++.... ....+++.+|+++++.++||||+++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 578999999999999999999876 48999999997542 34457788999999999999999999999654 3
Q ss_pred eeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 729 FKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 729 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
..|+||||+++ ++.+.+.. .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+.
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~ 213 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLART 213 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC--
T ss_pred eEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEeeee
Confidence 57999999964 67777753 4899999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCcccccccccccccccCCCCC
Q 003301 809 LSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 809 ~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
..... .....+||+.|+|||++
T Consensus 214 ~~~~~--~~~~~~gt~~y~aPE~~ 235 (464)
T 3ttj_A 214 AGTSF--MMTPYVVTRYYRAPEVI 235 (464)
T ss_dssp ---CC--CC----CCCTTCCHHHH
T ss_pred cCCCc--ccCCCcccccccCHHHH
Confidence 64432 23346799999999963
No 202
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.94 E-value=3.8e-27 Score=267.05 Aligned_cols=170 Identities=26% Similarity=0.414 Sum_probs=147.3
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
..++|++.+.||+|+||+||+|.+. +++.||||++.... ......+.+|++++++++||||+++++++.+.+..|+|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 3467999999999999999999986 58999999987543 23457789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC---CCCcEEEeccccccccC
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLD---KDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~---~~~~~kl~DFg~a~~~~ 810 (832)
|||+++|+|.+++...+ .+++..+..++.|++.||+||| ++||+||||||+||+++ .++.+||+|||+|+...
T Consensus 100 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 175 (486)
T 3mwu_A 100 GELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (486)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBC
T ss_pred EEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECC
Confidence 99999999999887654 6899999999999999999999 99999999999999995 45689999999998765
Q ss_pred CCcccccccccccccccCCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~l 832 (832)
.... ....+||+.|+|||++
T Consensus 176 ~~~~--~~~~~gt~~y~aPE~~ 195 (486)
T 3mwu_A 176 QNTK--MKDRIGTAYYIAPEVL 195 (486)
T ss_dssp CC------CCTTGGGGCCGGGG
T ss_pred CCCc--cCCCcCCCCCCCHHHh
Confidence 4332 2335799999999974
No 203
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=2.5e-27 Score=258.10 Aligned_cols=178 Identities=29% Similarity=0.398 Sum_probs=151.7
Q ss_pred ccccchHHHHHHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCC-----CCceee
Q 003301 646 RRRFSYKELLQATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVR-----HRNLVK 719 (832)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~ 719 (832)
...+++.+.....++|++.++||+|+||+||+|++. +++.||||++... ....+.+..|+++++.++ ||||++
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 344555555566789999999999999999999985 5889999998743 233466778999999886 999999
Q ss_pred eceEEecCCeeEEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC----
Q 003301 720 IISSCTNNDFKALVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK---- 794 (832)
Q Consensus 720 l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---- 794 (832)
+++++...+..|+||||+ +++|.+++.... ..+++..+..++.|++.||+||| ++||+||||||+||+++.
T Consensus 101 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~ 176 (360)
T 3llt_A 101 YHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFE 176 (360)
T ss_dssp EEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCC
T ss_pred ccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEcccccc
Confidence 999999999999999999 999999998654 35899999999999999999999 999999999999999975
Q ss_pred ---------------------CCcEEEeccccccccCCCcccccccccccccccCCCCC
Q 003301 795 ---------------------DMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 795 ---------------------~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
++.+||+|||+|+...... ....||+.|+|||++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~----~~~~gt~~y~aPE~~ 231 (360)
T 3llt_A 177 KSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH----GSIINTRQYRAPEVI 231 (360)
T ss_dssp EEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC----CSCCSCGGGCCHHHH
T ss_pred ccccchhcccccccccccccCCCCEEEEeccCceecCCCC----cCccCcccccCcHHH
Confidence 7899999999998654322 235699999999963
No 204
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.1e-27 Score=256.65 Aligned_cols=169 Identities=25% Similarity=0.391 Sum_probs=142.5
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCC--CceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRH--RNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+.+++.||||++.... ....+.+.+|++++++++| |||+++++++.+++..|+|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 45799999999999999999999889999999987543 3345678899999999976 9999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
||+ .+++|.+++...+ .+++..+..++.|++.||+||| +.||+||||||+||+++ ++.+||+|||+|+......
T Consensus 88 ~e~-~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~ 161 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 161 (343)
T ss_dssp ECC-CSEEHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred EeC-CCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence 995 4889999998754 6899999999999999999999 99999999999999997 6789999999998765433
Q ss_pred cc-ccccccccccccCCCCC
Q 003301 814 SM-KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~-~~~~~~gt~~y~APE~l 832 (832)
.. .....+||+.|+|||++
T Consensus 162 ~~~~~~~~~gt~~y~aPE~~ 181 (343)
T 3dbq_A 162 TSVVKDSQVGTVNYMPPEAI 181 (343)
T ss_dssp --------CCCCSSCCHHHH
T ss_pred ccccCCCCcCCcCcCCHHHH
Confidence 22 22345799999999963
No 205
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=99.94 E-value=5.9e-27 Score=248.03 Aligned_cols=168 Identities=21% Similarity=0.302 Sum_probs=146.5
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 735 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ..+.+.+|+++++.+ +|++++++++++......|+|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 467999999999999999999974 58999999986543 235678899999999 79999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc-----EEEeccccccccC
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV-----AHLSDFGIAKLLS 810 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~-----~kl~DFg~a~~~~ 810 (832)
|+ +++|.+++...+..+++..+..++.|++.|++||| ++||+||||||+||+++.++. +||+|||+|+...
T Consensus 87 ~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~ 162 (298)
T 1csn_A 87 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 162 (298)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred ec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccc
Confidence 99 99999999877667999999999999999999999 999999999999999987776 9999999998765
Q ss_pred CCccc------ccccccccccccCCCC
Q 003301 811 GEESM------KQTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~------~~~~~~gt~~y~APE~ 831 (832)
..... ......||+.|+|||+
T Consensus 163 ~~~~~~~~~~~~~~~~~gt~~y~aPE~ 189 (298)
T 1csn_A 163 DPVTKQHIPYREKKNLSGTARYMSINT 189 (298)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHH
T ss_pred cccccccccccCccCCCCCcccCCchh
Confidence 43321 1234569999999996
No 206
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=5.5e-27 Score=252.96 Aligned_cols=168 Identities=30% Similarity=0.485 Sum_probs=140.1
Q ss_pred HHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcC--CCCceeeeceEEecC----Ce
Q 003301 656 QATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSV--RHRNLVKIISSCTNN----DF 729 (832)
Q Consensus 656 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~l~~~~~~~----~~ 729 (832)
...++|++.+.||+|+||.||+|++ .++.||||++..... ....+|.+++... +||||+++++++... ..
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 109 (337)
T 3mdy_A 34 TIAKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTTEE---ASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQ 109 (337)
T ss_dssp THHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCE
T ss_pred ccccceEEEeEeecCCCeEEEEEEE-CCceEEEEEEecccc---chhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCc
Confidence 3457899999999999999999998 589999999864432 3455566666554 899999999999877 78
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC--------CeEecCCCCCCeEeCCCCcEEEe
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSN--------PVVHCDIKPSNVLLDKDMVAHLS 801 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~--------~ivH~Dlkp~NIl~~~~~~~kl~ 801 (832)
.|+||||+++|+|.++++.. .+++..+..++.|++.|++||| +. ||+||||||+||+++.++.+||+
T Consensus 110 ~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~ 184 (337)
T 3mdy_A 110 LYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIA 184 (337)
T ss_dssp EEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred eEEEEeccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEecccchHHEEECCCCCEEEE
Confidence 99999999999999999765 4899999999999999999999 77 99999999999999999999999
Q ss_pred ccccccccCCCcccc---cccccccccccCCCCC
Q 003301 802 DFGIAKLLSGEESMK---QTLTLATIGYMAPGLF 832 (832)
Q Consensus 802 DFg~a~~~~~~~~~~---~~~~~gt~~y~APE~l 832 (832)
|||+|+......... .....||+.|+|||++
T Consensus 185 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~ 218 (337)
T 3mdy_A 185 DLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVL 218 (337)
T ss_dssp CCTTCEECC---------CCSSCSCGGGCCHHHH
T ss_pred eCCCceeeccccccccCCCCCCccCcceeChhhc
Confidence 999998764433221 1235799999999963
No 207
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.94 E-value=5.7e-27 Score=245.13 Aligned_cols=172 Identities=24% Similarity=0.368 Sum_probs=149.7
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+++..|+||
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence 4578999999999999999999886 58999999997543 334578889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
||+++++|.+++.... .+++..+..++.|++.|++||| +.|++||||||+||+++.++.+||+|||.+........
T Consensus 85 e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~ 160 (276)
T 2yex_A 85 EYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (276)
T ss_dssp ECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred EecCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcc
Confidence 9999999999987643 6899999999999999999999 99999999999999999999999999999986533221
Q ss_pred -cccccccccccccCCCCC
Q 003301 815 -MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 815 -~~~~~~~gt~~y~APE~l 832 (832)
.......||+.|+|||++
T Consensus 161 ~~~~~~~~~~~~y~aPE~~ 179 (276)
T 2yex_A 161 ERLLNKMCGTLPYVAPELL 179 (276)
T ss_dssp ECCBCCCCSCGGGCCGGGG
T ss_pred hhcccCCccccCccChHHH
Confidence 122335699999999974
No 208
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=2.7e-27 Score=256.19 Aligned_cols=172 Identities=24% Similarity=0.426 Sum_probs=145.4
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCC
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSV-RHRNLVKIISSCTNND 728 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~ 728 (832)
..++|++.+.||+|+||.||+|.+. ++..||+|++.... ....+.+.+|+++++++ +||||+++++++...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 4578999999999999999999862 35689999997543 33457889999999999 8999999999999999
Q ss_pred eeEEEEecCCCCCHHHHHhhCCC----------------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCC
Q 003301 729 FKALVLEYMPNGSLEDYLYSNNF----------------------SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIK 786 (832)
Q Consensus 729 ~~~lv~e~~~~g~L~~~l~~~~~----------------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk 786 (832)
..|+||||+++|+|.+++..... .+++..+..++.|++.||+||| ++||+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 99999999999999999986542 2789999999999999999999 9999999999
Q ss_pred CCCeEeCCCCcEEEeccccccccCCCccc-ccccccccccccCCCC
Q 003301 787 PSNVLLDKDMVAHLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 787 p~NIl~~~~~~~kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
|+||+++.++.+||+|||+|......... ......||+.|+|||+
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~ 245 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPES 245 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHH
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHH
Confidence 99999999999999999999866433221 2233457889999996
No 209
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.94 E-value=5.4e-27 Score=250.66 Aligned_cols=172 Identities=23% Similarity=0.312 Sum_probs=145.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEe----cCCeeEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCT----NNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----~~~~~~l 732 (832)
.++|++.+.||+|+||.||+|... +++.||||++........+.+.+|+++++.++||||+++++++. .....|+
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 478999999999999999999984 58999999987766666788999999999999999999999986 3347899
Q ss_pred EEecCCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 733 VLEYMPNGSLEDYLYS---NNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
||||+++|+|.+++.. ....+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||.+...
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 9999999999999875 3456999999999999999999999 999999999999999999999999999998765
Q ss_pred CCCccc--------ccccccccccccCCCCC
Q 003301 810 SGEESM--------KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 810 ~~~~~~--------~~~~~~gt~~y~APE~l 832 (832)
...... ......||+.|+|||++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~ 215 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAPELF 215 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCGGGS
T ss_pred ccccccccccccccccccccCCcccCCHhHh
Confidence 322111 11224579999999974
No 210
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.94 E-value=5e-27 Score=247.24 Aligned_cols=167 Identities=28% Similarity=0.401 Sum_probs=144.7
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 732 (832)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ......+.+|+..+..+ +||||+++++++.+++..|+
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 3578999999999999999999986 58999999987543 23456788899999999 99999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC--------------
Q 003301 733 VLEYMPNGSLEDYLYSNN---FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKD-------------- 795 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~-------------- 795 (832)
||||+++++|.+++.... ..+++..+..++.|++.||+||| ++||+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~ 165 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDD 165 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC----------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCccccccccccc
Confidence 999999999999997531 35899999999999999999999 9999999999999999844
Q ss_pred -----CcEEEeccccccccCCCcccccccccccccccCCCC
Q 003301 796 -----MVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 796 -----~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
..+||+|||.+....... ...||+.|+|||+
T Consensus 166 ~~~~~~~~kl~Dfg~~~~~~~~~-----~~~gt~~y~aPE~ 201 (289)
T 1x8b_A 166 WASNKVMFKIGDLGHVTRISSPQ-----VEEGDSRFLANEV 201 (289)
T ss_dssp ----CCCEEECCCTTCEETTCSC-----CCCCCGGGCCHHH
T ss_pred ccCCceEEEEcccccccccCCcc-----ccCCCccccChhH
Confidence 479999999998765432 2359999999996
No 211
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.94 E-value=6.4e-27 Score=248.97 Aligned_cols=170 Identities=29% Similarity=0.453 Sum_probs=141.0
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch-----hhHHHHHHHHHHHhcCC---CCceeeeceEEecC
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE-----GALKSFDVECEVLKSVR---HRNLVKIISSCTNN 727 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~ 727 (832)
..++|++.+.||+|+||+||+|++. +++.||||++..... .....+.+|+++++.++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 3579999999999999999999975 589999999874431 12346677888777664 99999999999875
Q ss_pred C-----eeEEEEecCCCCCHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEe
Q 003301 728 D-----FKALVLEYMPNGSLEDYLYSNNF-SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLS 801 (832)
Q Consensus 728 ~-----~~~lv~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 801 (832)
. ..++||||++ ++|.+++..... .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~ 162 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLA 162 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEEe
Confidence 5 5799999995 699999987543 3899999999999999999999 9999999999999999999999999
Q ss_pred ccccccccCCCcccccccccccccccCCCCC
Q 003301 802 DFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 802 DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
|||.|+....... .....||+.|+|||++
T Consensus 163 Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~ 191 (308)
T 3g33_A 163 DFGLARIYSYQMA--LTPVVVTLWYRAPEVL 191 (308)
T ss_dssp SCSCTTTSTTCCC--SGGGGCCCSSCCHHHH
T ss_pred eCccccccCCCcc--cCCccccccccCchHH
Confidence 9999987644332 2345799999999963
No 212
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.94 E-value=4.4e-27 Score=253.21 Aligned_cols=171 Identities=26% Similarity=0.494 Sum_probs=146.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEec--------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcC-CCCceeeeceEEecC
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL--------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSV-RHRNLVKIISSCTNN 727 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 727 (832)
.++|++.+.||+|+||.||+|++. ++..||||++.... ....+.+.+|+++++++ +||||+++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 478999999999999999999873 46789999987543 33456788999999999 899999999999999
Q ss_pred CeeEEEEecCCCCCHHHHHhhCCC---------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe
Q 003301 728 DFKALVLEYMPNGSLEDYLYSNNF---------------SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL 792 (832)
Q Consensus 728 ~~~~lv~e~~~~g~L~~~l~~~~~---------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~ 792 (832)
+..|+||||+++|+|.+++..... .+++..+..++.|++.||+||| +.||+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEE
Confidence 999999999999999999986532 3889999999999999999999 9999999999999999
Q ss_pred CCCCcEEEeccccccccCCCccc-ccccccccccccCCCC
Q 003301 793 DKDMVAHLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 793 ~~~~~~kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
+.++.+||+|||+|+........ ......+|+.|+|||+
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 230 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEA 230 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHH
T ss_pred cCCCCEEEccccccccccccccccccCCCCcccceeChHH
Confidence 99999999999999876543322 2223457889999996
No 213
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.94 E-value=1.3e-27 Score=267.72 Aligned_cols=170 Identities=26% Similarity=0.458 Sum_probs=141.1
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
..++|++.+.||+|+||.||+|.+.++..||||+++... ...+.+.+|++++++++||||+++++++.+ +..|+||||
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~ 259 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 259 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehh
Confidence 356788999999999999999999888889999987543 234688999999999999999999999876 678999999
Q ss_pred CCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccc
Q 003301 737 MPNGSLEDYLYSN-NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESM 815 (832)
Q Consensus 737 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~ 815 (832)
+++|+|.++++.. ...+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+|+........
T Consensus 260 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~ 336 (452)
T 1fmk_A 260 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT 336 (452)
T ss_dssp CTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred hcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCcee
Confidence 9999999999753 235899999999999999999999 999999999999999999999999999999876543333
Q ss_pred ccccccccccccCCCC
Q 003301 816 KQTLTLATIGYMAPGL 831 (832)
Q Consensus 816 ~~~~~~gt~~y~APE~ 831 (832)
......+|+.|+|||+
T Consensus 337 ~~~~~~~~~~y~aPE~ 352 (452)
T 1fmk_A 337 ARQGAKFPIKWTAPEA 352 (452)
T ss_dssp ------CCGGGSCHHH
T ss_pred cccCCcccccccCHhH
Confidence 3333457889999996
No 214
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=99.94 E-value=3.7e-27 Score=258.74 Aligned_cols=168 Identities=24% Similarity=0.389 Sum_probs=142.9
Q ss_pred cCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCC--CCceeeeceEEecCCeeEEEE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--EGALKSFDVECEVLKSVR--HRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ 734 (832)
++|++.+.||+|+||.||+|.+.+++.||||++.... ....+.+.+|++++++++ ||||+++++++..++..|+||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 4699999999999999999998889999999997543 334578899999999996 599999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
|+ .+++|.+++.... .+++..+..++.||+.||+||| +.||+||||||+||+++ ++.+||+|||+|+.......
T Consensus 136 E~-~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~ 209 (390)
T 2zmd_A 136 EC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 209 (390)
T ss_dssp EC-CSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-----
T ss_pred ec-CCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCc
Confidence 95 5889999998765 7899999999999999999999 99999999999999995 58999999999987654332
Q ss_pred c-ccccccccccccCCCCC
Q 003301 815 M-KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 815 ~-~~~~~~gt~~y~APE~l 832 (832)
. .....+||+.|+|||++
T Consensus 210 ~~~~~~~~gt~~y~aPE~~ 228 (390)
T 2zmd_A 210 SVVKDSQVGAVNYMPPEAI 228 (390)
T ss_dssp ----CCSCCCGGGCCHHHH
T ss_pred cccCCCCCcCCCccChHHh
Confidence 1 22345799999999963
No 215
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=99.94 E-value=5.7e-27 Score=258.02 Aligned_cols=165 Identities=24% Similarity=0.353 Sum_probs=133.5
Q ss_pred hcCCCCC-CeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHh-cCCCCceeeeceEEec----CCee
Q 003301 658 TNQFNAS-NLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLK-SVRHRNLVKIISSCTN----NDFK 730 (832)
Q Consensus 658 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~-~l~h~niv~l~~~~~~----~~~~ 730 (832)
.++|.+. +.||+|+||+||+|.+. +++.||||++... ..+.+|++++. ..+||||+++++++.. .+..
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~ 134 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 134 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence 4567776 78999999999999886 4889999998643 45667888874 4589999999998865 5678
Q ss_pred EEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCcEEEeccccc
Q 003301 731 ALVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK---DMVAHLSDFGIA 806 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~DFg~a 806 (832)
|+||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.||+||||||+||+++. ++.+||+|||+|
T Consensus 135 ~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a 211 (400)
T 1nxk_A 135 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 211 (400)
T ss_dssp EEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEecccc
Confidence 99999999999999998653 35899999999999999999999 999999999999999987 789999999999
Q ss_pred cccCCCcccccccccccccccCCCCC
Q 003301 807 KLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 807 ~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
+....... ....+||+.|+|||++
T Consensus 212 ~~~~~~~~--~~~~~gt~~y~aPE~~ 235 (400)
T 1nxk_A 212 KETTSHNS--LTTPCYTPYYVAPEVL 235 (400)
T ss_dssp EECC-------------CTTCCGGGS
T ss_pred cccCCCCc--cccCCCCCCccCHhhc
Confidence 87643322 2345799999999975
No 216
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.94 E-value=4.1e-27 Score=267.15 Aligned_cols=169 Identities=26% Similarity=0.427 Sum_probs=143.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.++|++.+.||+|+||+||+|++. ++..||+|++.... ......+.+|+++++.++||||+++++++.+.+..|+||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 457999999999999999999986 58899999987543 233567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCcEEEeccccccccCC
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK---DMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~DFg~a~~~~~ 811 (832)
|||++|+|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++. ++.+||+|||+|+....
T Consensus 116 e~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~ 191 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN 191 (494)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBT
T ss_pred ecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCC
Confidence 9999999999887654 6899999999999999999999 999999999999999976 45699999999987654
Q ss_pred CcccccccccccccccCCCCC
Q 003301 812 EESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 812 ~~~~~~~~~~gt~~y~APE~l 832 (832)
... ....+||+.|+|||++
T Consensus 192 ~~~--~~~~~gt~~y~aPE~l 210 (494)
T 3lij_A 192 QKK--MKERLGTAYYIAPEVL 210 (494)
T ss_dssp TBC--BCCCCSCTTTCCHHHH
T ss_pred Ccc--ccccCCCcCeeCHHHH
Confidence 332 2335799999999963
No 217
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.94 E-value=4.4e-27 Score=263.33 Aligned_cols=165 Identities=33% Similarity=0.492 Sum_probs=142.7
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCC-eeEEEEe
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNND-FKALVLE 735 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e 735 (832)
..++|++.+.||+|+||.||+|.+ .++.||||+++... ..+.+.+|++++++++||||+++++++...+ ..|+|||
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e 267 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 267 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEE
Confidence 357889999999999999999998 58899999997553 4478999999999999999999999987655 7899999
Q ss_pred cCCCCCHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 736 YMPNGSLEDYLYSNNF-SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
|+++|+|.++++..+. .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+|+......
T Consensus 268 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~- 343 (450)
T 1k9a_A 268 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ- 343 (450)
T ss_dssp CCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred ecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccc-
Confidence 9999999999986543 3799999999999999999999 9999999999999999999999999999998643221
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
....+|+.|+|||+
T Consensus 344 ---~~~~~~~~y~aPE~ 357 (450)
T 1k9a_A 344 ---DTGKLPVKWTAPEA 357 (450)
T ss_dssp ------CCCTTTSCHHH
T ss_pred ---cCCCCCcceeCHHH
Confidence 12357889999996
No 218
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.94 E-value=7.1e-27 Score=244.41 Aligned_cols=169 Identities=28% Similarity=0.490 Sum_probs=141.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 468999999999999999999986 58999999987543 23356788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++++|.+++.... .+++..+..++.|++.|++||| +.|++||||||+||+++.++.+||+|||.+.......
T Consensus 90 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~ 165 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165 (276)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred EeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence 99999999999997654 6899999999999999999999 9999999999999999999999999999998765433
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
. .....||+.|+|||++
T Consensus 166 ~--~~~~~~~~~y~aPE~~ 182 (276)
T 2h6d_A 166 F--LRTSCGSPNYAAPEVI 182 (276)
T ss_dssp -------------CCTGGG
T ss_pred c--eecccCCccccCHHHH
Confidence 2 2234699999999974
No 219
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.94 E-value=3.9e-27 Score=256.83 Aligned_cols=177 Identities=24% Similarity=0.307 Sum_probs=144.3
Q ss_pred cchHHHHHHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccch-----------hhHHHHHHHHHHHhcCCCCce
Q 003301 649 FSYKELLQATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLE-----------GALKSFDVECEVLKSVRHRNL 717 (832)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----------~~~~~~~~e~~~l~~l~h~ni 717 (832)
...+++....++|++.+.||+|+||.||+|.+.+++.||||++..... ...+.+.+|++++++++||||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 345677778899999999999999999999988899999999864321 123678999999999999999
Q ss_pred eeeceEEec-----CCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe
Q 003301 718 VKIISSCTN-----NDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL 792 (832)
Q Consensus 718 v~l~~~~~~-----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~ 792 (832)
+++++++.. ....|+||||++ |++.+++......+++..+..++.|++.||+||| +.||+||||||+||++
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~ 167 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILL 167 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEE
T ss_pred cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEE
Confidence 999999843 346899999996 6999998877667999999999999999999999 9999999999999999
Q ss_pred CCCCcEEEeccccccccCCCcccccccccccccccCCCC
Q 003301 793 DKDMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 793 ~~~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+.++.+||+|||.|+...... ......||+.|+|||+
T Consensus 168 ~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~ 204 (362)
T 3pg1_A 168 ADNNDITICDFNLAREDTADA--NKTHYVTHRWYRAPEL 204 (362)
T ss_dssp CTTCCEEECCTTC-----------------CGGGCCHHH
T ss_pred cCCCCEEEEecCccccccccc--ccceecccceecCcHH
Confidence 999999999999998653332 2233569999999995
No 220
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.94 E-value=6.9e-27 Score=248.21 Aligned_cols=168 Identities=27% Similarity=0.421 Sum_probs=145.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
.++|++.+.||+|+||.||+|++. +|+.||+|++........+.+.+|++++++++||||+++++++.+.+..|+||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL 87 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence 467999999999999999999986 5899999999866544456788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCcEEEeccccccccCCCc
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL---DKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~DFg~a~~~~~~~ 813 (832)
+++++|.+++...+ .+++..+..++.|++.|++||| +.||+||||||+||++ +.++.+||+|||.++.....
T Consensus 88 ~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~- 162 (304)
T 2jam_A 88 VSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG- 162 (304)
T ss_dssp CCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB-
T ss_pred CCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC-
Confidence 99999999987654 6899999999999999999999 9999999999999999 78899999999999765332
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
......||+.|+|||++
T Consensus 163 --~~~~~~~~~~y~aPE~~ 179 (304)
T 2jam_A 163 --IMSTACGTPGYVAPEVL 179 (304)
T ss_dssp --TTHHHHSCCCBCCTTTB
T ss_pred --ccccccCCCCccChHHh
Confidence 12234699999999974
No 221
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.94 E-value=7.1e-27 Score=265.90 Aligned_cols=170 Identities=26% Similarity=0.415 Sum_probs=145.8
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccch-------------hhHHHHHHHHHHHhcCCCCceeeece
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLE-------------GALKSFDVECEVLKSVRHRNLVKIIS 722 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~-------------~~~~~~~~e~~~l~~l~h~niv~l~~ 722 (832)
..++|++.+.||+|+||+||+|.+.. ++.||+|++..... ...+.+.+|++++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 35789999999999999999999864 78999999875421 23467889999999999999999999
Q ss_pred EEecCCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---cEE
Q 003301 723 SCTNNDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM---VAH 799 (832)
Q Consensus 723 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~---~~k 799 (832)
++.+.+..|+|||||++|+|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++.++ .+|
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~k 189 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINRH-KFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIK 189 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSEE
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccEE
Confidence 9999999999999999999999987654 6999999999999999999999 99999999999999998776 699
Q ss_pred EeccccccccCCCcccccccccccccccCCCCC
Q 003301 800 LSDFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 800 l~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
|+|||+|+....... ....+||+.|+|||++
T Consensus 190 l~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~ 220 (504)
T 3q5i_A 190 IVDFGLSSFFSKDYK--LRDRLGTAYYIAPEVL 220 (504)
T ss_dssp ECCCTTCEECCTTSC--BCCCCSCTTTCCHHHH
T ss_pred EEECCCCEEcCCCCc--cccccCCcCCCCHHHh
Confidence 999999987754332 2335799999999963
No 222
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.94 E-value=4.1e-27 Score=249.80 Aligned_cols=171 Identities=27% Similarity=0.408 Sum_probs=142.4
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEec---------
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTN--------- 726 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--------- 726 (832)
..++|++.+.||+|+||.||+|++. +++.||||++... ....+.+.+|++++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 3568999999999999999999975 5899999998654 3445788899999999999999999998865
Q ss_pred ----CCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEec
Q 003301 727 ----NDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSD 802 (832)
Q Consensus 727 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 802 (832)
.+..|+||||+++++|.+++......+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~kl~d 159 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGD 159 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECC
T ss_pred ccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEEEee
Confidence 35689999999999999999876667889999999999999999999 99999999999999999999999999
Q ss_pred cccccccCCCc-------------ccccccccccccccCCCC
Q 003301 803 FGIAKLLSGEE-------------SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 803 Fg~a~~~~~~~-------------~~~~~~~~gt~~y~APE~ 831 (832)
||.++...... ........||+.|+|||+
T Consensus 160 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 201 (303)
T 1zy4_A 160 FGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEV 201 (303)
T ss_dssp CCCCSCTTC-------------------------CTTSCHHH
T ss_pred CcchhhcccccchhccccccccccccccccCCCcccccCccc
Confidence 99998764321 112233569999999996
No 223
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.94 E-value=2.9e-27 Score=248.01 Aligned_cols=170 Identities=27% Similarity=0.474 Sum_probs=142.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC----CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD----GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
.++|++.+.||+|+||.||+|.+.. +..||+|++.... ....+.+.+|++++++++||||+++++++.+ +..|+
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence 4789999999999999999998653 3459999987553 3445788999999999999999999999875 45689
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+++++|.+++...+..+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+|||.+......
T Consensus 90 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 166 (281)
T 3cc6_A 90 IMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDE 166 (281)
T ss_dssp EEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---
T ss_pred EEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCcccccc
Confidence 99999999999999876667999999999999999999999 999999999999999999999999999999876554
Q ss_pred cccccccccccccccCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~ 831 (832)
.........+|+.|+|||+
T Consensus 167 ~~~~~~~~~~~~~y~aPE~ 185 (281)
T 3cc6_A 167 DYYKASVTRLPIKWMSPES 185 (281)
T ss_dssp ------CCCCCGGGCCHHH
T ss_pred cccccccCCCCcceeCchh
Confidence 4333344567889999996
No 224
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.4e-27 Score=251.63 Aligned_cols=171 Identities=29% Similarity=0.500 Sum_probs=148.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEe-----cCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCC--ee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSF-----LDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNND--FK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~ 730 (832)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 46789999999999999999984 358899999998766666678999999999999999999999987644 78
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
++||||+++++|.+++......+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||.|+...
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~ 196 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 196 (326)
T ss_dssp EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence 9999999999999999887667999999999999999999999 9999999999999999999999999999998775
Q ss_pred CCccc--ccccccccccccCCCC
Q 003301 811 GEESM--KQTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~--~~~~~~gt~~y~APE~ 831 (832)
..... ......++..|+|||+
T Consensus 197 ~~~~~~~~~~~~~~~~~y~aPE~ 219 (326)
T 2w1i_A 197 QDKEYYKVKEPGESPIFWYAPES 219 (326)
T ss_dssp SSCSEEECSSCCSCCGGGCCHHH
T ss_pred ccccccccccCCCCceeEECchh
Confidence 44321 1223457888999996
No 225
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=99.94 E-value=4.6e-27 Score=255.00 Aligned_cols=170 Identities=29% Similarity=0.455 Sum_probs=144.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEec--------
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTN-------- 726 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-------- 726 (832)
.++|++.+.||+|+||.||+|++. +++.||||++.... ......+.+|+++++.++||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 468999999999999999999985 58999999986543 2234577899999999999999999999876
Q ss_pred CCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccc
Q 003301 727 NDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIA 806 (832)
Q Consensus 727 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a 806 (832)
.+..|+||||++ +++.+.+......+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|
T Consensus 96 ~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 171 (351)
T 3mi9_A 96 KGSIYLVFDFCE-HDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLA 171 (351)
T ss_dssp -CEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CceEEEEEeccC-CCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchhc
Confidence 446899999996 5888888776667999999999999999999999 999999999999999999999999999999
Q ss_pred cccCCCcc---cccccccccccccCCCC
Q 003301 807 KLLSGEES---MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 807 ~~~~~~~~---~~~~~~~gt~~y~APE~ 831 (832)
+....... .......||+.|+|||+
T Consensus 172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 199 (351)
T 3mi9_A 172 RAFSLAKNSQPNRYTNRVVTLWYRPPEL 199 (351)
T ss_dssp EECCCCSSSSCCCCCSSCSCGGGCCHHH
T ss_pred ccccccccccccccCCcccccCccCchh
Confidence 87643221 12234568999999995
No 226
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.94 E-value=2.9e-27 Score=253.44 Aligned_cols=172 Identities=23% Similarity=0.479 Sum_probs=130.8
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecCC----cEEEEEEEecc--chhhHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLDG----MEVAIKVFHLQ--LEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~~----~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
..++|++.+.||+|+||.||+|++... ..||||++... .....+.+.+|++++++++||||+++++++...+..
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 357899999999999999999987643 27999998754 234457889999999999999999999999877655
Q ss_pred ------EEEEecCCCCCHHHHHhhCC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEE
Q 003301 731 ------ALVLEYMPNGSLEDYLYSNN-----FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAH 799 (832)
Q Consensus 731 ------~lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~k 799 (832)
|+||||+++|+|.+++.... ..+++..+..++.|++.|++||| ++||+||||||+||+++.++.+|
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~k 177 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVC 177 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEE
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEE
Confidence 99999999999999986432 25899999999999999999999 99999999999999999999999
Q ss_pred EeccccccccCCCccc-ccccccccccccCCCC
Q 003301 800 LSDFGIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 800 l~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
|+|||.|+........ ......+|+.|+|||+
T Consensus 178 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~ 210 (323)
T 3qup_A 178 VADFGLSRKIYSGDYYRQGCASKLPVKWLALES 210 (323)
T ss_dssp ECCCCC-----------------CCGGGCCHHH
T ss_pred EeeccccccccccccccccccccCcccccCchh
Confidence 9999999876443322 2223457889999996
No 227
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.94 E-value=3.7e-27 Score=251.50 Aligned_cols=171 Identities=25% Similarity=0.425 Sum_probs=147.9
Q ss_pred hcCCCCCCeeeccCCceEEEEEe------cCCcEEEEEEEeccch-hhHHHHHHHHHHHhcC-CCCceeeeceEEecCCe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSF------LDGMEVAIKVFHLQLE-GALKSFDVECEVLKSV-RHRNLVKIISSCTNNDF 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~ 729 (832)
.++|++.+.||+|+||.||+|++ .+++.||+|++..... ...+.+.+|+++++++ +||||+++++++..++.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 46899999999999999999985 2467899999975542 3457889999999999 99999999999999999
Q ss_pred eEEEEecCCCCCHHHHHhhCCC-----------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe
Q 003301 730 KALVLEYMPNGSLEDYLYSNNF-----------------SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL 792 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~-----------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~ 792 (832)
.|+||||+++|+|.+++..... .+++..+..++.|++.|++||| ++||+||||||+||++
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~ 178 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILL 178 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEE
Confidence 9999999999999999986542 3899999999999999999999 9999999999999999
Q ss_pred CCCCcEEEeccccccccCCCccc-ccccccccccccCCCC
Q 003301 793 DKDMVAHLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 793 ~~~~~~kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
+.++.+||+|||.++........ ......||+.|+|||+
T Consensus 179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 218 (313)
T 1t46_A 179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPES 218 (313)
T ss_dssp ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHH
T ss_pred cCCCCEEEccccccccccccccceeccCCCCcceeeChHH
Confidence 99999999999999876544322 1223457889999995
No 228
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.94 E-value=4e-27 Score=266.99 Aligned_cols=169 Identities=28% Similarity=0.463 Sum_probs=149.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 467999999999999999999986 58999999986543 33457889999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCcEEEeccccccccC
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL---DKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~DFg~a~~~~ 810 (832)
|||+++|+|.+++.... .+++..+..++.|++.||+||| ++||+||||||+||++ +.++.+||+|||+|+...
T Consensus 105 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 180 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRK-RFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE 180 (484)
T ss_dssp ECCCCSCBHHHHHHTCS-CCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence 99999999999987654 6999999999999999999999 9999999999999999 567899999999998775
Q ss_pred CCcccccccccccccccCCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~l 832 (832)
.... ....+||+.|+|||++
T Consensus 181 ~~~~--~~~~~gt~~y~aPE~~ 200 (484)
T 3nyv_A 181 ASKK--MKDKIGTAYYIAPEVL 200 (484)
T ss_dssp CCCS--HHHHTTGGGTCCHHHH
T ss_pred cccc--cccCCCCccccCceee
Confidence 4432 2335799999999963
No 229
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.94 E-value=1.7e-27 Score=252.77 Aligned_cols=171 Identities=26% Similarity=0.409 Sum_probs=144.7
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
..++|++.+.||+|+||.||+|.+.. ++.||+|++........+.+.+|+++++.++||||+++++++..++..|+|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 35789999999999999999999864 88999999877666666889999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccc
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESM 815 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~ 815 (832)
|+++++|.+++......+++..+..++.|++.|++||| +.|++||||||+||+++.++.+||+|||++........
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 172 (302)
T 2j7t_A 97 FCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQ- 172 (302)
T ss_dssp CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHH-
T ss_pred eCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCcccccccc-
Confidence 99999999998875557999999999999999999999 99999999999999999999999999999764321111
Q ss_pred ccccccccccccCCCC
Q 003301 816 KQTLTLATIGYMAPGL 831 (832)
Q Consensus 816 ~~~~~~gt~~y~APE~ 831 (832)
......||+.|+|||+
T Consensus 173 ~~~~~~~~~~y~aPE~ 188 (302)
T 2j7t_A 173 KRDSFIGTPYWMAPEV 188 (302)
T ss_dssp C-----CCGGGCCHHH
T ss_pred ccccccCChhhcCCee
Confidence 1223469999999996
No 230
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.94 E-value=8e-27 Score=245.11 Aligned_cols=167 Identities=27% Similarity=0.453 Sum_probs=147.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+.. ++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 3679999999999999999998864 7889999987543 22346788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++++|.+++...+ .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.+.......
T Consensus 93 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~ 168 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR 168 (284)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC
T ss_pred EEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCcccc
Confidence 99999999999998654 6899999999999999999999 9999999999999999999999999999997654322
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
.....||+.|+|||+
T Consensus 169 ---~~~~~~~~~y~aPE~ 183 (284)
T 2vgo_A 169 ---RRTMCGTLDYLPPEM 183 (284)
T ss_dssp ---BCCCCSCGGGCCHHH
T ss_pred ---cccccCCCCcCCHHH
Confidence 223569999999996
No 231
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.94 E-value=2.5e-27 Score=254.47 Aligned_cols=170 Identities=27% Similarity=0.439 Sum_probs=137.6
Q ss_pred HHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch--hhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 656 QATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE--GALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 656 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
...++|++.+.||+|+||+||+|.+. +++.||||++..... ...+.+.+|++++++++||||+++++++.+++..|+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 34678999999999999999999875 589999999865432 234567789999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe-----CCCCcEEEecccccc
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL-----DKDMVAHLSDFGIAK 807 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~-----~~~~~~kl~DFg~a~ 807 (832)
||||++ |+|.+++.... .+++..+..++.|++.||+||| ++||+||||||+||++ +.++.+||+|||.|+
T Consensus 111 v~e~~~-~~L~~~~~~~~-~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~ 185 (329)
T 3gbz_A 111 IFEYAE-NDLKKYMDKNP-DVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185 (329)
T ss_dssp EEECCS-EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHH
T ss_pred EEecCC-CCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCcc
Confidence 999996 59999998765 6899999999999999999999 9999999999999999 455569999999998
Q ss_pred ccCCCcccccccccccccccCCCC
Q 003301 808 LLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 808 ~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
....... .....+||+.|+|||+
T Consensus 186 ~~~~~~~-~~~~~~~t~~y~aPE~ 208 (329)
T 3gbz_A 186 AFGIPIR-QFTHEIITLWYRPPEI 208 (329)
T ss_dssp HHC------------CCTTCCHHH
T ss_pred ccCCccc-ccCCCcCCccccCHHH
Confidence 7653322 2233568999999996
No 232
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.94 E-value=7.1e-27 Score=243.65 Aligned_cols=165 Identities=22% Similarity=0.416 Sum_probs=145.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecC--CeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNN--DFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv 733 (832)
.++|++.+.||+|+||.||+|++ +++.||||++.... ....+.+.+|++++++++||||+++++++.+. +..++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 46799999999999999999998 58999999997653 33456789999999999999999999999877 788999
Q ss_pred EecCCCCCHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 734 LEYMPNGSLEDYLYSNNF-SFDILQRLSVIIDVALALEYLHFGYSNP--VVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
|||+++|+|.+++..... .+++..+..++.|++.|++||| +.+ ++||||||+||+++.++.++++|||++....
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~ 164 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence 999999999999987543 4899999999999999999999 889 9999999999999999999999999876532
Q ss_pred CCcccccccccccccccCCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~l 832 (832)
.. ...||+.|+|||++
T Consensus 165 ~~------~~~~t~~y~aPE~~ 180 (271)
T 3kmu_A 165 SP------GRMYAPAWVAPEAL 180 (271)
T ss_dssp CT------TCBSCGGGSCHHHH
T ss_pred cc------CccCCccccChhhh
Confidence 22 24689999999963
No 233
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.94 E-value=1.5e-27 Score=255.55 Aligned_cols=178 Identities=24% Similarity=0.378 Sum_probs=149.8
Q ss_pred hHHHHHHhcCCCCCCeeeccCCceEEEEEec------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceE
Q 003301 651 YKELLQATNQFNASNLIGTGGFGSVYKGSFL------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISS 723 (832)
Q Consensus 651 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~ 723 (832)
.+++....++|++.+.||+|+||.||+|.+. .++.||+|++.... ......+.+|++++++++||||++++++
T Consensus 17 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~ 96 (322)
T 1p4o_A 17 PDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGV 96 (322)
T ss_dssp CCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred hhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence 3444455688999999999999999999765 36789999987543 2344578899999999999999999999
Q ss_pred EecCCeeEEEEecCCCCCHHHHHhhCC---------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC
Q 003301 724 CTNNDFKALVLEYMPNGSLEDYLYSNN---------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK 794 (832)
Q Consensus 724 ~~~~~~~~lv~e~~~~g~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~ 794 (832)
+.+.+..|+||||+++|+|.+++...+ ..+++..+..++.|++.||+||| ++||+||||||+||+++.
T Consensus 97 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~ 173 (322)
T 1p4o_A 97 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAE 173 (322)
T ss_dssp ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECT
T ss_pred EccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcC
Confidence 999999999999999999999987522 34689999999999999999999 999999999999999999
Q ss_pred CCcEEEeccccccccCCCccc-ccccccccccccCCCC
Q 003301 795 DMVAHLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 795 ~~~~kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
++.+||+|||+++........ ......||+.|+|||+
T Consensus 174 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 211 (322)
T 1p4o_A 174 DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPES 211 (322)
T ss_dssp TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHH
T ss_pred CCeEEECcCccccccccccccccccCCCCCCCccChhh
Confidence 999999999999865433221 2223457899999996
No 234
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=5.1e-27 Score=255.57 Aligned_cols=164 Identities=25% Similarity=0.373 Sum_probs=137.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCC------
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNND------ 728 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 728 (832)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+++.+|+++++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 478999999999999999999885 58999999986432 334567889999999999999999999997653
Q ss_pred eeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 729 FKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 729 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
..|+||||+ +++|.++++.. .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+.
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 177 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQ 177 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence 469999999 88999999874 5899999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCcccccccccccccccCCCC
Q 003301 809 LSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 809 ~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
.... ....+||+.|+|||+
T Consensus 178 ~~~~----~~~~~~t~~y~aPE~ 196 (367)
T 1cm8_A 178 ADSE----MTGYVVTRWYRAPEV 196 (367)
T ss_dssp CCSS----CCSSCSCGGGCCTHH
T ss_pred cccc----cCcCcCCCCcCCHHH
Confidence 6432 233579999999996
No 235
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=99.94 E-value=3e-27 Score=257.59 Aligned_cols=171 Identities=20% Similarity=0.269 Sum_probs=140.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC------CcEEEEEEEeccchhh-----------HHHHHHHHHHHhcCCCCceeee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD------GMEVAIKVFHLQLEGA-----------LKSFDVECEVLKSVRHRNLVKI 720 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~~~-----------~~~~~~e~~~l~~l~h~niv~l 720 (832)
.++|++.+.||+|+||.||+|.+.. ++.||||++....... ......|+..++.++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4689999999999999999998864 4789999987553211 1233456667788899999999
Q ss_pred ceEEecC----CeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC--C
Q 003301 721 ISSCTNN----DFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLD--K 794 (832)
Q Consensus 721 ~~~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~--~ 794 (832)
++++... ...|+||||+ +++|.+++......+++..+..++.|++.||+||| ++||+||||||+||+++ .
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~~ 189 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYKN 189 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESSC
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecCC
Confidence 9998764 4589999999 99999999887667999999999999999999999 99999999999999998 8
Q ss_pred CCcEEEeccccccccCCCccc------ccccccccccccCCCCC
Q 003301 795 DMVAHLSDFGIAKLLSGEESM------KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 795 ~~~~kl~DFg~a~~~~~~~~~------~~~~~~gt~~y~APE~l 832 (832)
++.+||+|||+|+.+...... .....+||+.|||||++
T Consensus 190 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~ 233 (364)
T 3op5_A 190 PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAH 233 (364)
T ss_dssp TTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHH
T ss_pred CCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHh
Confidence 899999999999876433211 11234599999999963
No 236
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.94 E-value=6.2e-27 Score=253.79 Aligned_cols=168 Identities=26% Similarity=0.396 Sum_probs=148.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhh-----------------HHHHHHHHHHHhcCCCCceeee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGA-----------------LKSFDVECEVLKSVRHRNLVKI 720 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~e~~~l~~l~h~niv~l 720 (832)
.++|++.+.||+|+||.||+|.+ +++.||||++....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 47899999999999999999999 99999999987543211 1788999999999999999999
Q ss_pred ceEEecCCeeEEEEecCCCCCHHHH------HhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeEe
Q 003301 721 ISSCTNNDFKALVLEYMPNGSLEDY------LYSN-NFSFDILQRLSVIIDVALALEYLHFGYS-NPVVHCDIKPSNVLL 792 (832)
Q Consensus 721 ~~~~~~~~~~~lv~e~~~~g~L~~~------l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~-~~ivH~Dlkp~NIl~ 792 (832)
++++.+.+..|+||||+++++|.++ +... ...+++..+..++.|++.|++||| + .||+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence 9999999999999999999999998 6542 346999999999999999999999 8 999999999999999
Q ss_pred CCCCcEEEeccccccccCCCcccccccccccccccCCCCC
Q 003301 793 DKDMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 793 ~~~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
+.++.+||+|||.+...... ......||+.|+|||++
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~ 222 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFF 222 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGG
T ss_pred cCCCcEEEeccccccccccc---cccCCCCCcCccCchhh
Confidence 99999999999999876433 22335699999999974
No 237
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.94 E-value=6e-27 Score=247.96 Aligned_cols=171 Identities=26% Similarity=0.470 Sum_probs=143.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC----CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEe-cCCeeE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD----GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCT-NNDFKA 731 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~ 731 (832)
..+|++.+.||+|+||.||+|.+.+ ...||+|.+.... ....+.+.+|++++++++||||+++++++. .++..|
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 4578899999999999999998653 2358999887543 344577899999999999999999999864 566889
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCC
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~ 811 (832)
+||||+++|+|.++++.....+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+|||.|+....
T Consensus 104 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 180 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 180 (298)
T ss_dssp EEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred EEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccccccc
Confidence 999999999999999876667899999999999999999999 99999999999999999999999999999987654
Q ss_pred Cccc---ccccccccccccCCCC
Q 003301 812 EESM---KQTLTLATIGYMAPGL 831 (832)
Q Consensus 812 ~~~~---~~~~~~gt~~y~APE~ 831 (832)
.... ......||+.|+|||+
T Consensus 181 ~~~~~~~~~~~~~~~~~y~aPE~ 203 (298)
T 3f66_A 181 KEYYSVHNKTGAKLPVKWMALES 203 (298)
T ss_dssp GGGCBC-----CCBCGGGSCHHH
T ss_pred cchhccccccCCCCCccccChHH
Confidence 3321 2233457889999996
No 238
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.94 E-value=3e-27 Score=253.58 Aligned_cols=170 Identities=29% Similarity=0.468 Sum_probs=139.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcE----EEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GME----VAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKA 731 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 731 (832)
.++|++.+.||+|+||+||+|++.. ++. ||+|.+.... ....+.+.+|++++++++||||+++++++.+.. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 3679999999999999999998753 443 5777765332 334578899999999999999999999998765 78
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCC
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~ 811 (832)
+|+||+++|+|.+++......+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+....
T Consensus 93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~ 169 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTT
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEccC
Confidence 999999999999999887778999999999999999999999 99999999999999999999999999999987654
Q ss_pred Cccc-ccccccccccccCCCC
Q 003301 812 EESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 812 ~~~~-~~~~~~gt~~y~APE~ 831 (832)
.... ......||+.|+|||+
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~ 190 (327)
T 3poz_A 170 EEKEYHAEGGKVPIKWMALES 190 (327)
T ss_dssp TCC-------CCCGGGSCHHH
T ss_pred CcccccccCCCccccccChHH
Confidence 3322 2223457889999996
No 239
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=7.3e-27 Score=245.82 Aligned_cols=170 Identities=25% Similarity=0.455 Sum_probs=145.0
Q ss_pred hcCCCCCC-eeeccCCceEEEEEec---CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 658 TNQFNASN-LIGTGGFGSVYKGSFL---DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
.++|.+.+ .||+|+||.||+|.+. ++..||||+++... ....+.+.+|++++++++||||+++++++ ..+..|+
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 35566666 9999999999999864 47889999997643 34457889999999999999999999999 4556899
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+++++|.+++......+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.++.....
T Consensus 87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~ 163 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGAD 163 (287)
T ss_dssp EEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTC
T ss_pred EEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccC
Confidence 99999999999999876667999999999999999999999 999999999999999999999999999999877543
Q ss_pred cccc--cccccccccccCCCC
Q 003301 813 ESMK--QTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~~~--~~~~~gt~~y~APE~ 831 (832)
.... .....||+.|+|||+
T Consensus 164 ~~~~~~~~~~~~~~~y~aPE~ 184 (287)
T 1u59_A 164 DSYYTARSAGKWPLKWYAPEC 184 (287)
T ss_dssp SCEECCCCSSCCCGGGCCHHH
T ss_pred cceeeccccccccccccCHHH
Confidence 3221 222357899999996
No 240
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.94 E-value=8.8e-27 Score=244.68 Aligned_cols=168 Identities=25% Similarity=0.403 Sum_probs=144.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch------hhHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE------GALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
.++|++.+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 357999999999999999999986 589999999875431 1357889999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC----cEEEeccccc
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM----VAHLSDFGIA 806 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~----~~kl~DFg~a 806 (832)
|+||||+++++|.+++.... .+++..+..++.|++.|++||| +.|++||||||+||+++.++ .+||+|||.+
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~ 159 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIA 159 (283)
T ss_dssp EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTTC
T ss_pred EEEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEecccc
Confidence 99999999999999997643 6899999999999999999999 99999999999999998877 8999999999
Q ss_pred cccCCCcccccccccccccccCCCC
Q 003301 807 KLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 807 ~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
........ .....||+.|+|||+
T Consensus 160 ~~~~~~~~--~~~~~~~~~y~aPE~ 182 (283)
T 3bhy_A 160 HKIEAGNE--FKNIFGTPEFVAPEI 182 (283)
T ss_dssp EECC----------CCCGGGCCHHH
T ss_pred eeccCCCc--ccccCCCcCccCcce
Confidence 87644332 233569999999996
No 241
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=99.94 E-value=3.8e-27 Score=248.20 Aligned_cols=168 Identities=28% Similarity=0.484 Sum_probs=134.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
.++|++.+.||+|+||.||+|++. ..||+|+++... ....+.+.+|++++++++||||+++++++ ..+..++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 578999999999999999999863 369999987543 33457789999999999999999999965 4556899999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc-c
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE-S 814 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~-~ 814 (832)
|+++++|.+++......+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+...... .
T Consensus 100 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 176 (289)
T 3og7_A 100 WCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGS 176 (289)
T ss_dssp CCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC-----------
T ss_pred ecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceecccccccccc
Confidence 99999999999877667999999999999999999999 9999999999999999999999999999998654322 1
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
.......||+.|+|||+
T Consensus 177 ~~~~~~~gt~~y~aPE~ 193 (289)
T 3og7_A 177 HQFEQLSGSILWMAPEV 193 (289)
T ss_dssp -------CCCTTCCHHH
T ss_pred ccccccCCCccccCchh
Confidence 22233569999999996
No 242
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.94 E-value=2.9e-27 Score=252.64 Aligned_cols=181 Identities=22% Similarity=0.403 Sum_probs=151.3
Q ss_pred ccchHHHHHHhcCCCCCCeeeccCCceEEEEEec------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcC-CCCceee
Q 003301 648 RFSYKELLQATNQFNASNLIGTGGFGSVYKGSFL------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSV-RHRNLVK 719 (832)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~ 719 (832)
.+...++....++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++++ +||||++
T Consensus 16 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~ 95 (316)
T 2xir_A 16 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 95 (316)
T ss_dssp CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred cccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeee
Confidence 3455555556789999999999999999999752 46889999997653 23446788999999999 7999999
Q ss_pred eceEEecCC-eeEEEEecCCCCCHHHHHhhCCCC---------------CCHHHHHHHHHHHHHHHHHHhcCCCCCeEec
Q 003301 720 IISSCTNND-FKALVLEYMPNGSLEDYLYSNNFS---------------FDILQRLSVIIDVALALEYLHFGYSNPVVHC 783 (832)
Q Consensus 720 l~~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~~---------------~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~ 783 (832)
+++++...+ ..|+||||+++++|.+++...... +++..+..++.|++.|++||| +.||+||
T Consensus 96 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~ 172 (316)
T 2xir_A 96 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHR 172 (316)
T ss_dssp EEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCS
T ss_pred EEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccc
Confidence 999987654 589999999999999999875432 789999999999999999999 9999999
Q ss_pred CCCCCCeEeCCCCcEEEeccccccccCCCcc-cccccccccccccCCCC
Q 003301 784 DIKPSNVLLDKDMVAHLSDFGIAKLLSGEES-MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 784 Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~-~~~~~~~gt~~y~APE~ 831 (832)
||||+||+++.++.+||+|||.|+....... .......||+.|+|||+
T Consensus 173 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~ 221 (316)
T 2xir_A 173 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET 221 (316)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHH
T ss_pred cCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchh
Confidence 9999999999999999999999987644332 22233568899999996
No 243
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=99.94 E-value=6.5e-27 Score=252.25 Aligned_cols=166 Identities=34% Similarity=0.547 Sum_probs=136.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHH--HhcCCCCceeeeceEEec-----CCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEV--LKSVRHRNLVKIISSCTN-----NDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~--l~~l~h~niv~l~~~~~~-----~~~~ 730 (832)
.++|++.+.||+|+||.||+|++ +++.||||++..... ..+..|.++ +..++||||+++++++.. ....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 57899999999999999999987 789999999875432 334444444 455899999999985532 3367
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC---------CeEecCCCCCCeEeCCCCcEEEe
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSN---------PVVHCDIKPSNVLLDKDMVAHLS 801 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~---------~ivH~Dlkp~NIl~~~~~~~kl~ 801 (832)
|+||||+++|+|.++++... .++..+..++.|++.||+||| +. ||+||||||+||+++.++.+||+
T Consensus 88 ~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~ 162 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162 (336)
T ss_dssp EEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTSCEEEC
T ss_pred EEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCCcEEEe
Confidence 89999999999999998764 588999999999999999999 88 99999999999999999999999
Q ss_pred ccccccccCCCcc-------cccccccccccccCCCCC
Q 003301 802 DFGIAKLLSGEES-------MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 802 DFg~a~~~~~~~~-------~~~~~~~gt~~y~APE~l 832 (832)
|||+|+....... ......+||+.|+|||++
T Consensus 163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~ 200 (336)
T 3g2f_A 163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVL 200 (336)
T ss_dssp CCTTCEECSSSSCC---------CCTTSCGGGCCHHHH
T ss_pred eccceeecccccccCccccccccccCCCccceeCchhh
Confidence 9999987643221 112234699999999963
No 244
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.94 E-value=1.6e-26 Score=247.02 Aligned_cols=166 Identities=27% Similarity=0.458 Sum_probs=142.9
Q ss_pred CCCCCeeeccCCceEEEEEec-----CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEec--CCeeEE
Q 003301 661 FNASNLIGTGGFGSVYKGSFL-----DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTN--NDFKAL 732 (832)
Q Consensus 661 ~~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~l 732 (832)
|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++.+ ....|+
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 489999999999999988653 57889999997654 3445778999999999999999999999987 467899
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+++++|.+++.... +++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.|+.....
T Consensus 113 v~e~~~~~~L~~~l~~~~--~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 187 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 187 (318)
T ss_dssp EECCCTTCBHHHHGGGSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTT
T ss_pred EEecccCCcHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCcccccccccc
Confidence 999999999999998754 899999999999999999999 999999999999999999999999999999887544
Q ss_pred ccc--ccccccccccccCCCC
Q 003301 813 ESM--KQTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~~--~~~~~~gt~~y~APE~ 831 (832)
... ......||+.|+|||+
T Consensus 188 ~~~~~~~~~~~~~~~y~aPE~ 208 (318)
T 3lxp_A 188 HEYYRVREDGDSPVFWYAPEC 208 (318)
T ss_dssp CSEEEC---CCCCGGGCCHHH
T ss_pred ccccccccCCCCCceeeChHH
Confidence 321 1233458889999996
No 245
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.94 E-value=1.5e-26 Score=245.54 Aligned_cols=168 Identities=31% Similarity=0.448 Sum_probs=148.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
.+.|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+++..|+|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 467999999999999999999875 58999999997554 3445788999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccc
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESM 815 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~ 815 (832)
|+++++|.+++... .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.+........
T Consensus 101 ~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 174 (303)
T 3a7i_A 101 YLGGGSALDLLEPG--PLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI- 174 (303)
T ss_dssp CCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC-
T ss_pred eCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCcccc-
Confidence 99999999999753 5899999999999999999999 99999999999999999999999999999987654332
Q ss_pred ccccccccccccCCCC
Q 003301 816 KQTLTLATIGYMAPGL 831 (832)
Q Consensus 816 ~~~~~~gt~~y~APE~ 831 (832)
......||+.|+|||+
T Consensus 175 ~~~~~~~~~~y~aPE~ 190 (303)
T 3a7i_A 175 KRNTFVGTPFWMAPEV 190 (303)
T ss_dssp CBCCCCSCGGGCCHHH
T ss_pred ccCccCCCcCccCHHH
Confidence 2233569999999996
No 246
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=7.5e-27 Score=251.06 Aligned_cols=171 Identities=26% Similarity=0.485 Sum_probs=140.5
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-----CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-----GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKA 731 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 731 (832)
.++|++.+.||+|+||.||+|.+.. +..||||+++... ......+.+|++++++++||||+++++++...+..|
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 122 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 122 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence 3577888999999999999998753 2459999987543 334567889999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCC
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~ 811 (832)
+||||+++++|.+++......+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||.++....
T Consensus 123 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~ 199 (333)
T 1mqb_A 123 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLED 199 (333)
T ss_dssp EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred EEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhcc
Confidence 999999999999999887667999999999999999999999 99999999999999999999999999999987654
Q ss_pred Cccc--ccccccccccccCCCC
Q 003301 812 EESM--KQTLTLATIGYMAPGL 831 (832)
Q Consensus 812 ~~~~--~~~~~~gt~~y~APE~ 831 (832)
.... ......+|+.|+|||+
T Consensus 200 ~~~~~~~~~~~~~~~~y~aPE~ 221 (333)
T 1mqb_A 200 DPEATYTTSGGKIPIRWTAPEA 221 (333)
T ss_dssp -----------CCCGGGSCHHH
T ss_pred ccccccccCCCCccccccCchh
Confidence 3221 1122346889999996
No 247
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.94 E-value=6.2e-27 Score=251.72 Aligned_cols=169 Identities=31% Similarity=0.442 Sum_probs=141.9
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccch--hhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLE--GALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.++|++.+.||+|+||.||+|.+.. ++.||||++..... ...+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 4789999999999999999999865 89999999865432 33456789999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
||++++++.++..... .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.++.......
T Consensus 104 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 179 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE 179 (331)
T ss_dssp ECCSEEHHHHHHHSTT-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred ecCCcchHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCcc
Confidence 9999988888765443 6999999999999999999999 99999999999999999999999999999987644332
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
......||+.|+|||+
T Consensus 180 -~~~~~~~t~~y~aPE~ 195 (331)
T 4aaa_A 180 -VYDDEVATRWYRAPEL 195 (331)
T ss_dssp -----CCCCCTTCCHHH
T ss_pred -ccCCCcCCccccCccc
Confidence 2233569999999996
No 248
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.94 E-value=2.3e-26 Score=242.34 Aligned_cols=167 Identities=27% Similarity=0.409 Sum_probs=143.7
Q ss_pred cCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEec----CCeeE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTN----NDFKA 731 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~ 731 (832)
..|++.+.||+|+||.||+|.+. ++..||+|++.... ....+.+.+|++++++++||||+++++++.. ....|
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 45788899999999999999886 47889999987543 3445778899999999999999999998865 45689
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeEeC-CCCcEEEeccccccc
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNP--VVHCDIKPSNVLLD-KDMVAHLSDFGIAKL 808 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~-~~~~~kl~DFg~a~~ 808 (832)
+||||+++++|.+++.... .+++..+..++.|++.|++||| +.+ |+||||||+||+++ .++.+||+|||+|..
T Consensus 106 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~ 181 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181 (290)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred EEEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence 9999999999999998653 6899999999999999999999 888 99999999999997 789999999999976
Q ss_pred cCCCcccccccccccccccCCCCC
Q 003301 809 LSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 809 ~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
..... .....||+.|+|||++
T Consensus 182 ~~~~~---~~~~~~t~~y~aPE~~ 202 (290)
T 1t4h_A 182 KRASF---AKAVIGTPEFMAPEMY 202 (290)
T ss_dssp CCTTS---BEESCSSCCCCCGGGG
T ss_pred ccccc---cccccCCcCcCCHHHH
Confidence 54332 2235699999999974
No 249
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.94 E-value=1.3e-26 Score=245.27 Aligned_cols=169 Identities=26% Similarity=0.396 Sum_probs=148.4
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc---------hhhHHHHHHHHHHHhcCC-CCceeeeceEEe
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL---------EGALKSFDVECEVLKSVR-HRNLVKIISSCT 725 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---------~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~ 725 (832)
..++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 4578999999999999999999986 48999999997542 123467789999999995 999999999999
Q ss_pred cCCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccc
Q 003301 726 NNDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGI 805 (832)
Q Consensus 726 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~ 805 (832)
.++..|+||||+++++|.+++.... .+++..+..++.|++.|++||| +.|++||||||+||+++.++.+||+|||.
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~ 170 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGF 170 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred cCCeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEecccc
Confidence 9999999999999999999998653 6899999999999999999999 99999999999999999999999999999
Q ss_pred ccccCCCcccccccccccccccCCCC
Q 003301 806 AKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 806 a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+........ .....||+.|+|||+
T Consensus 171 ~~~~~~~~~--~~~~~~~~~y~aPE~ 194 (298)
T 1phk_A 171 SCQLDPGEK--LREVCGTPSYLAPEI 194 (298)
T ss_dssp CEECCTTCC--BCCCCSCGGGCCHHH
T ss_pred hhhcCCCcc--cccccCCccccCHHH
Confidence 987654332 233569999999996
No 250
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=243.48 Aligned_cols=169 Identities=30% Similarity=0.439 Sum_probs=143.3
Q ss_pred cCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEecC
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEYM 737 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 737 (832)
++|.....||+|+||.||+|.+. +++.||||++........+.+.+|+.+++.++||||+++++++...+..++||||+
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 34556679999999999999975 48899999998766556678999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCcEEEeccccccccCCCcc
Q 003301 738 PNGSLEDYLYSNNF--SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK-DMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 738 ~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~-~~~~kl~DFg~a~~~~~~~~ 814 (832)
++++|.+++..... .+++..+..++.|++.|++||| +.|++||||||+||+++. ++.+||+|||.++.......
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~ 178 (295)
T 2clq_A 102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP 178 (295)
T ss_dssp SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCC
Confidence 99999999986532 4678899999999999999999 999999999999999987 89999999999987654322
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
. .....||+.|+|||+
T Consensus 179 ~-~~~~~~~~~y~aPE~ 194 (295)
T 2clq_A 179 C-TETFTGTLQYMAPEI 194 (295)
T ss_dssp ---CCCCCCGGGCCHHH
T ss_pred c-ccccCCCccccChhh
Confidence 1 223569999999996
No 251
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.94 E-value=4.9e-27 Score=255.75 Aligned_cols=167 Identities=26% Similarity=0.375 Sum_probs=146.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..|+|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 467999999999999999999986 58999999987653 3445788999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSN-PVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
|+++++|.+++...+ .+++..+..++.|++.|++||| +. ||+||||||+||+++.++.+||+|||+|+.....
T Consensus 112 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 185 (360)
T ss_dssp CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred CCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc--
Confidence 999999999998754 6899999999999999999999 75 9999999999999999999999999999765222
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
......||+.|+|||+
T Consensus 186 -~~~~~~gt~~y~aPE~ 201 (360)
T 3eqc_A 186 -MANSFVGTRSYMSPER 201 (360)
T ss_dssp -C----CCCCTTCCHHH
T ss_pred -cccCCCCCCCeECHHH
Confidence 1223569999999996
No 252
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.94 E-value=5.8e-27 Score=244.40 Aligned_cols=165 Identities=24% Similarity=0.474 Sum_probs=133.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc----hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL----EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+ .++.||||++.... ....+.+.+|+++++.++||||+++++++.+++..|+|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 46899999999999999999998 58999999986543 22346788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC---eEecCCCCCCeEeCC--------CCcEEEec
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNP---VVHCDIKPSNVLLDK--------DMVAHLSD 802 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~---ivH~Dlkp~NIl~~~--------~~~~kl~D 802 (832)
|||+++++|.+++... .+++..+..++.|++.|++||| ++| |+||||||+||+++. ++.+||+|
T Consensus 85 ~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~D 159 (271)
T 3dtc_A 85 MEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITD 159 (271)
T ss_dssp EECCTTEEHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECC
T ss_pred EEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccccccccCcceEEcc
Confidence 9999999999999643 5899999999999999999999 888 999999999999986 77899999
Q ss_pred cccccccCCCcccccccccccccccCCCC
Q 003301 803 FGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 803 Fg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
||.++....... ....||+.|+|||+
T Consensus 160 fg~~~~~~~~~~---~~~~~~~~y~aPE~ 185 (271)
T 3dtc_A 160 FGLAREWHRTTK---MSAAGAYAWMAPEV 185 (271)
T ss_dssp CCC----------------CCGGGSCHHH
T ss_pred CCcccccccccc---cCCCCccceeCHHH
Confidence 999987644322 23469999999996
No 253
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=247.71 Aligned_cols=169 Identities=30% Similarity=0.422 Sum_probs=143.9
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
..++|++.+.||+|+||.||+|.+.. |+.||+|++.... ..+.+.+|++++++++||||+++++++...+..|+|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 45789999999999999999998864 8999999987543 34678899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccc
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESM 815 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~ 815 (832)
|+++++|.+++......+++..+..++.|++.|++||| +.|++||||||+||+++.++.+||+|||.+........
T Consensus 105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~- 180 (314)
T 3com_A 105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA- 180 (314)
T ss_dssp CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS-
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc-
Confidence 99999999999755557999999999999999999999 99999999999999999999999999999987644322
Q ss_pred ccccccccccccCCCC
Q 003301 816 KQTLTLATIGYMAPGL 831 (832)
Q Consensus 816 ~~~~~~gt~~y~APE~ 831 (832)
......||+.|+|||+
T Consensus 181 ~~~~~~~~~~y~aPE~ 196 (314)
T 3com_A 181 KRNTVIGTPFWMAPEV 196 (314)
T ss_dssp CBCCCCSCGGGCCHHH
T ss_pred ccCccCCCCCccChhh
Confidence 2233569999999996
No 254
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.94 E-value=2.6e-27 Score=255.03 Aligned_cols=174 Identities=24% Similarity=0.411 Sum_probs=147.2
Q ss_pred HHHhcCCCCCCeeeccCCceEEEEEecC------CcEEEEEEEeccc-hhhHHHHHHHHHHHhcC-CCCceeeeceEEec
Q 003301 655 LQATNQFNASNLIGTGGFGSVYKGSFLD------GMEVAIKVFHLQL-EGALKSFDVECEVLKSV-RHRNLVKIISSCTN 726 (832)
Q Consensus 655 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~ 726 (832)
....++|++.+.||+|+||.||+|.+.. ...||+|++.... ....+.+.+|+++++++ +||||+++++++..
T Consensus 42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 121 (333)
T 2i1m_A 42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH 121 (333)
T ss_dssp BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence 3446789999999999999999998753 2479999987553 33456788999999999 89999999999999
Q ss_pred CCeeEEEEecCCCCCHHHHHhhC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC
Q 003301 727 NDFKALVLEYMPNGSLEDYLYSN-------------NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLD 793 (832)
Q Consensus 727 ~~~~~lv~e~~~~g~L~~~l~~~-------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~ 793 (832)
.+..|+||||+++|+|.+++... ...+++..+..++.|++.||+||| +.||+||||||+||+++
T Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~ 198 (333)
T 2i1m_A 122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLT 198 (333)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEE
T ss_pred CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEEC
Confidence 99999999999999999998753 235789999999999999999999 99999999999999999
Q ss_pred CCCcEEEeccccccccCCCccc-ccccccccccccCCCC
Q 003301 794 KDMVAHLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 794 ~~~~~kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
.++.+||+|||+|+........ ......||+.|+|||+
T Consensus 199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 237 (333)
T 2i1m_A 199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPES 237 (333)
T ss_dssp GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHH
T ss_pred CCCeEEECccccccccccccceeecCCCCCCccccCHHH
Confidence 9999999999999865433221 2223457889999995
No 255
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.94 E-value=1.4e-27 Score=253.58 Aligned_cols=169 Identities=28% Similarity=0.473 Sum_probs=131.5
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhc--CCCCceeeeceEEecCC----eeE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKS--VRHRNLVKIISSCTNND----FKA 731 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~~~ 731 (832)
.++|++.+.||+|+||.||+|++ +++.||||++... ....+.+|.+++.. ++||||+++++++...+ ..|
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 36899999999999999999987 5899999998643 23567778888887 79999999999998776 789
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEecCCCCCCeEeCCCCcEEEeccccc
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFG-----YSNPVVHCDIKPSNVLLDKDMVAHLSDFGIA 806 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-----~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a 806 (832)
+||||+++|+|.+++++. .+++..+..++.|++.|++|||.. +++||+||||||+||+++.++.+||+|||+|
T Consensus 78 lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DFg~a 155 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EEEECCTTCCHHHHHHHC--CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCCCC-
T ss_pred EEEeccCCCCHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeecCcc
Confidence 999999999999999765 477888999999999999999932 2679999999999999999999999999999
Q ss_pred cccCCCccc---ccccccccccccCCCCC
Q 003301 807 KLLSGEESM---KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 807 ~~~~~~~~~---~~~~~~gt~~y~APE~l 832 (832)
+........ ......||+.|+|||++
T Consensus 156 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~ 184 (303)
T 3gxj_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVL 184 (303)
T ss_dssp CCEETTTTEESCC-----CCGGGCCHHHH
T ss_pred eeccCCCcccccccCCCCcCccccCHhhh
Confidence 766443322 12234699999999963
No 256
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.94 E-value=3e-27 Score=270.18 Aligned_cols=171 Identities=26% Similarity=0.454 Sum_probs=147.3
Q ss_pred HHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEe
Q 003301 656 QATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 656 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 735 (832)
...++|++.+.||+|+||.||+|.+.++..||||+++.... ..+.+.+|++++++++||||+++++++.+ +..|+|||
T Consensus 264 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e 341 (535)
T 2h8h_A 264 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE 341 (535)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred cchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeee
Confidence 34577899999999999999999998888899999976542 34688999999999999999999999876 67899999
Q ss_pred cCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCcc
Q 003301 736 YMPNGSLEDYLYSN-NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEES 814 (832)
Q Consensus 736 ~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~ 814 (832)
|+++|+|.++++.. ...+++..+..++.|++.||+||| +++|+||||||+|||++.++.+||+|||+++.......
T Consensus 342 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 418 (535)
T 2h8h_A 342 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY 418 (535)
T ss_dssp CCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHH
T ss_pred hhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCce
Confidence 99999999999753 235899999999999999999999 99999999999999999999999999999987654332
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
.......++..|+|||+
T Consensus 419 ~~~~~~~~~~~y~aPE~ 435 (535)
T 2h8h_A 419 TARQGAKFPIKWTAPEA 435 (535)
T ss_dssp HTTCSTTSCGGGSCHHH
T ss_pred ecccCCcCcccccCHHH
Confidence 22233457889999996
No 257
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.94 E-value=1e-26 Score=247.57 Aligned_cols=171 Identities=28% Similarity=0.419 Sum_probs=137.0
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEecc---chhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQ---LEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 732 (832)
..++|++.+.||+|+||.||+|.+. +++.||+|++... .....+.+.+|++++++++||||+++++++..++..|+
T Consensus 30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 109 (310)
T 2wqm_A 30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI 109 (310)
T ss_dssp SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence 3568999999999999999999875 5899999999753 23445678899999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 733 VLEYMPNGSLEDYLYS---NNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
||||+++++|.+++.. ....+++..+..++.|++.|++||| +.|++||||||+||+++.++.+||+|||+++..
T Consensus 110 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~ 186 (310)
T 2wqm_A 110 VLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFF 186 (310)
T ss_dssp EEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC------
T ss_pred EEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeee
Confidence 9999999999999864 3446899999999999999999999 999999999999999999999999999999876
Q ss_pred CCCcccccccccccccccCCCC
Q 003301 810 SGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 810 ~~~~~~~~~~~~gt~~y~APE~ 831 (832)
..... ......||+.|+|||+
T Consensus 187 ~~~~~-~~~~~~~~~~y~aPE~ 207 (310)
T 2wqm_A 187 SSKTT-AAHSLVGTPYYMSPER 207 (310)
T ss_dssp -------------CCSSCCHHH
T ss_pred cCCCc-cccccCCCeeEeChHH
Confidence 44332 2223469999999995
No 258
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=4.7e-27 Score=255.91 Aligned_cols=170 Identities=25% Similarity=0.456 Sum_probs=134.2
Q ss_pred cCCCCCCeeeccCCceEEEEEecC----CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEec-CCeeEE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFLD----GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTN-NDFKAL 732 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~l 732 (832)
..|++.+.||+|+||.||+|++.+ +..||+|.+.... ....+.+.+|+.++++++||||+++++++.. ++..|+
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 356778999999999999998743 2458999886433 3455788999999999999999999998754 567899
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+++|+|.++++.....+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+.....
T Consensus 169 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 245 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 245 (373)
T ss_dssp EEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeecccccccccc
Confidence 99999999999999877667899999999999999999999 999999999999999999999999999999876433
Q ss_pred ccc---ccccccccccccCCCC
Q 003301 813 ESM---KQTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~~---~~~~~~gt~~y~APE~ 831 (832)
... ......+|+.|+|||+
T Consensus 246 ~~~~~~~~~~~~~~~~y~aPE~ 267 (373)
T 3c1x_A 246 EFDSVHNKTGAKLPVKWMALES 267 (373)
T ss_dssp ------------CCGGGSCHHH
T ss_pred ccccccccCCCCCcccccChHH
Confidence 211 1223457889999996
No 259
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=99.93 E-value=3.9e-27 Score=252.53 Aligned_cols=170 Identities=25% Similarity=0.413 Sum_probs=140.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcE----EEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GME----VAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKA 731 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 731 (832)
.++|++.+.||+|+||+||+|.+.. ++. ||+|.+.... ....+.+.+|+.++++++||||+++++++.. +..+
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~ 90 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG-SSLQ 90 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB-SSEE
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-CccE
Confidence 3679999999999999999998754 444 7777765432 2233567789999999999999999999864 5689
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCC
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~ 811 (832)
+||||+++|+|.+++...+..+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+....
T Consensus 91 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 167 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPP 167 (325)
T ss_dssp EEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCC
T ss_pred EEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccCc
Confidence 999999999999999876557899999999999999999999 99999999999999999999999999999988754
Q ss_pred Cccc-ccccccccccccCCCC
Q 003301 812 EESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 812 ~~~~-~~~~~~gt~~y~APE~ 831 (832)
.... ......||+.|+|||+
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~ 188 (325)
T 3kex_A 168 DDKQLLYSEAKTPIKWMALES 188 (325)
T ss_dssp CTTCCC-----CCTTTSCHHH
T ss_pred ccccccccCCCCcccccChHH
Confidence 4322 2233568889999996
No 260
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.93 E-value=1.1e-26 Score=243.92 Aligned_cols=166 Identities=26% Similarity=0.473 Sum_probs=144.0
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEec---------
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTN--------- 726 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--------- 726 (832)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... +.+.+|++++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 3567999999999999999999986 68999999987553 356789999999999999999998854
Q ss_pred -------CCeeEEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcE
Q 003301 727 -------NDFKALVLEYMPNGSLEDYLYSN-NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVA 798 (832)
Q Consensus 727 -------~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 798 (832)
....|+||||+++++|.+++... ...+++..+..++.|++.|++||| +.||+||||||+||+++.++.+
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~ 161 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQV 161 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCE
Confidence 34579999999999999999754 246899999999999999999999 9999999999999999999999
Q ss_pred EEeccccccccCCCcccccccccccccccCCCC
Q 003301 799 HLSDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 799 kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
||+|||.+........ .....||+.|+|||+
T Consensus 162 kl~Dfg~~~~~~~~~~--~~~~~~~~~y~aPE~ 192 (284)
T 2a19_B 162 KIGDFGLVTSLKNDGK--RTRSKGTLRYMSPEQ 192 (284)
T ss_dssp EECCCTTCEESSCCSC--CCCCCSCCTTSCHHH
T ss_pred EECcchhheecccccc--ccccCCcccccChhh
Confidence 9999999987654332 223469999999996
No 261
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=99.93 E-value=1.9e-26 Score=252.99 Aligned_cols=166 Identities=28% Similarity=0.430 Sum_probs=137.7
Q ss_pred HHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEec--------
Q 003301 656 QATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTN-------- 726 (832)
Q Consensus 656 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-------- 726 (832)
...++|++.+.||+|+||+||+|.+. +|+.||||++..... ...+|+++++.++||||+++++++..
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 45678999999999999999999875 589999999875432 23469999999999999999999844
Q ss_pred ------------------------------CCeeEEEEecCCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHh
Q 003301 727 ------------------------------NDFKALVLEYMPNGSLEDYLYS---NNFSFDILQRLSVIIDVALALEYLH 773 (832)
Q Consensus 727 ------------------------------~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH 773 (832)
....++||||++ ++|.+.+.. ....+++..+..++.|++.||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 158 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH 158 (383)
T ss_dssp ------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334889999996 588777653 3446999999999999999999999
Q ss_pred cCCCCCeEecCCCCCCeEeC-CCCcEEEeccccccccCCCcccccccccccccccCCCC
Q 003301 774 FGYSNPVVHCDIKPSNVLLD-KDMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 774 ~~~~~~ivH~Dlkp~NIl~~-~~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+.||+||||||+||+++ .++.+||+|||.|+....... .....||+.|+|||+
T Consensus 159 ---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~t~~y~aPE~ 212 (383)
T 3eb0_A 159 ---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP--SVAYICSRFYRAPEL 212 (383)
T ss_dssp ---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC--CCCCCCCSSCCCHHH
T ss_pred ---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC--CcCcccCCCccCHHH
Confidence 99999999999999997 689999999999987644432 233568999999995
No 262
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.93 E-value=1.6e-26 Score=244.74 Aligned_cols=170 Identities=24% Similarity=0.396 Sum_probs=143.9
Q ss_pred cCCCCCCeeeccCCceEEEEEecC----CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCee-EE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFLD----GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK-AL 732 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~-~l 732 (832)
-.|+..+.||+|+||.||+|.+.+ +..||+|++.... ....+.+.+|++++++++||||+++++++.+.+.. ++
T Consensus 21 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 100 (298)
T 3pls_A 21 VVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHV 100 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred eEEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEE
Confidence 356677999999999999998653 2369999987543 33457888999999999999999999999876654 99
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||||+.+++|.+++......+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.|+.....
T Consensus 101 v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~ 177 (298)
T 3pls_A 101 LLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDR 177 (298)
T ss_dssp EECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTG
T ss_pred EEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCC
Confidence 99999999999999886667999999999999999999999 999999999999999999999999999999866443
Q ss_pred cc---cccccccccccccCCCC
Q 003301 813 ES---MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~---~~~~~~~gt~~y~APE~ 831 (832)
.. .......+|+.|+|||+
T Consensus 178 ~~~~~~~~~~~~~~~~y~aPE~ 199 (298)
T 3pls_A 178 EYYSVQQHRHARLPVKWTALES 199 (298)
T ss_dssp GGGCSCCSSCTTCGGGGSCHHH
T ss_pred cccccccCcCCCCCccccChhh
Confidence 21 12223468899999995
No 263
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=99.93 E-value=3.1e-27 Score=258.72 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=135.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEecc---chhhHHHHHHHHH---HHhcCCCCceeeec-------eE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQ---LEGALKSFDVECE---VLKSVRHRNLVKII-------SS 723 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~---~l~~l~h~niv~l~-------~~ 723 (832)
.++|++.+.||+|+||+||+|++. +|+.||||++... .....+.+.+|++ .+++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 467999999999999999999974 5899999999743 2345578889994 55566899999998 66
Q ss_pred EecCC-----------------eeEEEEecCCCCCHHHHHhhCCC------CCCHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 003301 724 CTNND-----------------FKALVLEYMPNGSLEDYLYSNNF------SFDILQRLSVIIDVALALEYLHFGYSNPV 780 (832)
Q Consensus 724 ~~~~~-----------------~~~lv~e~~~~g~L~~~l~~~~~------~~~~~~~~~i~~~i~~~l~~LH~~~~~~i 780 (832)
+.+.+ ..|+||||+ +|+|.+++...+. .+++..+..++.|++.||+||| ++||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence 65543 278999999 6899999975421 1235788889999999999999 9999
Q ss_pred EecCCCCCCeEeCCCCcEEEeccccccccCCCcccccccccccccccCCCCC
Q 003301 781 VHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 781 vH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
+||||||+||+++.++.+||+|||+|+.... .....+| +.|+|||++
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~ 274 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELE 274 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhh
Confidence 9999999999999999999999999986432 2233567 999999963
No 264
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.93 E-value=5.6e-27 Score=251.64 Aligned_cols=177 Identities=28% Similarity=0.428 Sum_probs=144.9
Q ss_pred chHHHHHHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcC-CCCceeeeceEEec-
Q 003301 650 SYKELLQATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSV-RHRNLVKIISSCTN- 726 (832)
Q Consensus 650 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~- 726 (832)
+..++....++|++.+.||+|+||.||+|++. +++.||||++..... ..+.+.+|+++++++ +||||+++++++..
T Consensus 15 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~ 93 (326)
T 2x7f_A 15 DLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKK 93 (326)
T ss_dssp -CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEEC
T ss_pred cchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeec
Confidence 33344456789999999999999999999985 589999999875533 346788999999998 79999999999976
Q ss_pred -----CCeeEEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEE
Q 003301 727 -----NDFKALVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHL 800 (832)
Q Consensus 727 -----~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl 800 (832)
.+..|+||||+++++|.+++.... ..+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||
T Consensus 94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl 170 (326)
T 2x7f_A 94 NPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKL 170 (326)
T ss_dssp C--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEE
T ss_pred cCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEE
Confidence 468899999999999999998643 35899999999999999999999 999999999999999999999999
Q ss_pred eccccccccCCCcccccccccccccccCCCC
Q 003301 801 SDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 801 ~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+|||++........ ......||+.|+|||+
T Consensus 171 ~Dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~ 200 (326)
T 2x7f_A 171 VDFGVSAQLDRTVG-RRNTFIGTPYWMAPEV 200 (326)
T ss_dssp CCCTTTC--------------CCGGGCCHHH
T ss_pred eeCcCceecCcCcc-ccccccCCccccChhh
Confidence 99999987643322 2233569999999996
No 265
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.93 E-value=1.2e-26 Score=248.58 Aligned_cols=167 Identities=29% Similarity=0.416 Sum_probs=140.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc--------hhhHHHHHHHHHHHhcCCCCceeeeceEEecCC
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL--------EGALKSFDVECEVLKSVRHRNLVKIISSCTNND 728 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 728 (832)
.++|++.+.||+|+||.||+|.+.. ++.||||++.... ......+.+|++++++++||||+++++++..++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 4689999999999999999998864 8899999986432 122345788999999999999999999987665
Q ss_pred eeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc---EEEecccc
Q 003301 729 FKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV---AHLSDFGI 805 (832)
Q Consensus 729 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~---~kl~DFg~ 805 (832)
.|+||||+++++|.+++.... .+++..+..++.|++.||+||| ++||+||||||+||+++.++. +||+|||.
T Consensus 89 -~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~ 163 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGH 163 (322)
T ss_dssp -EEEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCCTT
T ss_pred -eEEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccCcc
Confidence 799999999999999987654 6899999999999999999999 999999999999999987654 99999999
Q ss_pred ccccCCCcccccccccccccccCCCC
Q 003301 806 AKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 806 a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
++...... ......||+.|+|||+
T Consensus 164 ~~~~~~~~--~~~~~~gt~~y~aPE~ 187 (322)
T 2ycf_A 164 SKILGETS--LMRTLCGTPTYLAPEV 187 (322)
T ss_dssp CEECCCCH--HHHHHHSCCTTCCHHH
T ss_pred ceeccccc--ccccccCCcCccCchh
Confidence 98764432 2233569999999996
No 266
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.3e-26 Score=248.31 Aligned_cols=170 Identities=29% Similarity=0.468 Sum_probs=137.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcE----EEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GME----VAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKA 731 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 731 (832)
.++|++.+.||+|+||.||+|.+.. ++. ||+|.+.... ....+.+.+|++++++++||||+++++++..+. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 4689999999999999999998753 444 5667665332 344578899999999999999999999998765 78
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCC
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~ 811 (832)
+|+||+++|+|.+++......+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+....
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~ 169 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC------
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccC
Confidence 999999999999999887777999999999999999999999 99999999999999999999999999999987644
Q ss_pred Cccc-ccccccccccccCCCC
Q 003301 812 EESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 812 ~~~~-~~~~~~gt~~y~APE~ 831 (832)
.... ......||+.|+|||+
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~ 190 (327)
T 3lzb_A 170 EEKEYHAEGGKVPIKWMALES 190 (327)
T ss_dssp ----------CCCGGGSCHHH
T ss_pred ccccccccCCCccccccCHHH
Confidence 3221 2223457889999996
No 267
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.8e-26 Score=247.40 Aligned_cols=171 Identities=23% Similarity=0.329 Sum_probs=133.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCC-CCceeeeceEEe--------cC
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVR-HRNLVKIISSCT--------NN 727 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~--------~~ 727 (832)
..+|++.+.||+|+||.||+|++. +++.||||++........+.+.+|+.+++++. ||||+++++++. ..
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 458999999999999999999976 58999999987666666678899999999996 999999999984 34
Q ss_pred CeeEEEEecCCCCCHHHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeEeCCCCcEEEecc
Q 003301 728 DFKALVLEYMPNGSLEDYLYS--NNFSFDILQRLSVIIDVALALEYLHFGYSNP--VVHCDIKPSNVLLDKDMVAHLSDF 803 (832)
Q Consensus 728 ~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~~~~~~kl~DF 803 (832)
...++||||++ |+|.+++.. ....+++..+..++.|++.||+||| +.| |+||||||+||+++.++.+||+||
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl~Df 182 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKLCDF 182 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEEecC
Confidence 45899999995 799998865 3446999999999999999999999 888 999999999999999999999999
Q ss_pred ccccccCCCccc-----------ccccccccccccCCCCC
Q 003301 804 GIAKLLSGEESM-----------KQTLTLATIGYMAPGLF 832 (832)
Q Consensus 804 g~a~~~~~~~~~-----------~~~~~~gt~~y~APE~l 832 (832)
|+++........ ......||+.|+|||++
T Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~ 222 (337)
T 3ll6_A 183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII 222 (337)
T ss_dssp TTCBCCSSCC------------------------------
T ss_pred ccceeccccCcccccccccccchhhccccCCCCcCChhhh
Confidence 999876543221 11134599999999974
No 268
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.2e-26 Score=246.41 Aligned_cols=165 Identities=30% Similarity=0.461 Sum_probs=134.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEecC
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEYM 737 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 737 (832)
.++|++.+.||+|+||.||+|++ .++.||||++... ...+.+.+|++++++++||||+++++++.+ ..|+||||+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~ 81 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYA 81 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECC
T ss_pred HhHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcC
Confidence 36789999999999999999998 5789999998643 345788999999999999999999998874 479999999
Q ss_pred CCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc-EEEeccccccccCCCcc
Q 003301 738 PNGSLEDYLYSNNF--SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV-AHLSDFGIAKLLSGEES 814 (832)
Q Consensus 738 ~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~-~kl~DFg~a~~~~~~~~ 814 (832)
++++|.+++..... .+++..+..++.|++.|++|||..+.+||+||||||+||+++.++. +||+|||.|.......
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~- 160 (307)
T 2eva_A 82 EGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHM- 160 (307)
T ss_dssp TTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---------
T ss_pred CCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccccc-
Confidence 99999999986542 3788999999999999999999222289999999999999998886 7999999998654321
Q ss_pred cccccccccccccCCCC
Q 003301 815 MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 815 ~~~~~~~gt~~y~APE~ 831 (832)
....||+.|+|||+
T Consensus 161 ---~~~~gt~~y~aPE~ 174 (307)
T 2eva_A 161 ---TNNKGSAAWMAPEV 174 (307)
T ss_dssp -------CCTTSSCHHH
T ss_pred ---ccCCCCCceEChhh
Confidence 23469999999996
No 269
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.93 E-value=2.4e-26 Score=250.48 Aligned_cols=168 Identities=25% Similarity=0.321 Sum_probs=144.5
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecC-----Cee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNN-----DFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~ 730 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 468999999999999999999876 58889999987433 33447788999999999999999999998654 368
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
|+||||++ ++|.++++.. .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||.|+...
T Consensus 106 ~iv~e~~~-~~L~~~l~~~--~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~ 179 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVAD 179 (364)
T ss_dssp EEEEECCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEcccC-cCHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEecC
Confidence 99999995 6999999765 4899999999999999999999 9999999999999999999999999999998765
Q ss_pred CCcccc--cccccccccccCCCC
Q 003301 811 GEESMK--QTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~~--~~~~~gt~~y~APE~ 831 (832)
...... ....+||+.|+|||+
T Consensus 180 ~~~~~~~~~~~~~gt~~y~aPE~ 202 (364)
T 3qyz_A 180 PDHDHTGFLTEYVATRWYRAPEI 202 (364)
T ss_dssp GGGCBCCTTCCCCSCGGGCCHHH
T ss_pred CCCCccccccccccccCCCCCHH
Confidence 432211 233579999999995
No 270
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.93 E-value=1.9e-26 Score=247.44 Aligned_cols=169 Identities=28% Similarity=0.498 Sum_probs=141.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcE--EEEEEEeccc-hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GME--VAIKVFHLQL-EGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~--vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 732 (832)
.++|++.+.||+|+||.||+|++.. +.. ||+|.+.... ....+.+.+|+++++++ +||||+++++++.+.+..|+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l 103 (327)
T 1fvr_A 24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 103 (327)
T ss_dssp GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence 3689999999999999999998754 554 4999887532 33456788999999999 89999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc
Q 003301 733 VLEYMPNGSLEDYLYSNN---------------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV 797 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~ 797 (832)
||||+++++|.+++...+ ..+++..+..++.|++.||+||| ++||+||||||+||+++.++.
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYV 180 (327)
T ss_dssp EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGC
T ss_pred EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCe
Confidence 999999999999997653 35899999999999999999999 999999999999999999999
Q ss_pred EEEeccccccccCCCcccccccccccccccCCCC
Q 003301 798 AHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 798 ~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+||+|||+++...... ......+++.|+|||+
T Consensus 181 ~kL~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~ 212 (327)
T 1fvr_A 181 AKIADFGLSRGQEVYV--KKTMGRLPVRWMAIES 212 (327)
T ss_dssp EEECCTTCEESSCEEC--CC----CCTTTCCHHH
T ss_pred EEEcccCcCccccccc--cccCCCCCccccChhh
Confidence 9999999997543221 2223457889999996
No 271
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.93 E-value=5.7e-27 Score=248.73 Aligned_cols=172 Identities=25% Similarity=0.390 Sum_probs=130.1
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
..++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++...+..|+||
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM 92 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence 4578999999999999999999875 58899999886443 234567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhh-------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccc
Q 003301 735 EYMPNGSLEDYLYS-------NNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAK 807 (832)
Q Consensus 735 e~~~~g~L~~~l~~-------~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~ 807 (832)
||+++++|.+++.. ....+++..+..++.|++.|++||| +.|++||||||+||+++.++.+||+|||.+.
T Consensus 93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~ 169 (303)
T 2vwi_A 93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSA 169 (303)
T ss_dssp ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccchh
Confidence 99999999999874 2345899999999999999999999 9999999999999999999999999999998
Q ss_pred ccCCCccc----ccccccccccccCCCC
Q 003301 808 LLSGEESM----KQTLTLATIGYMAPGL 831 (832)
Q Consensus 808 ~~~~~~~~----~~~~~~gt~~y~APE~ 831 (832)
........ ......||+.|+|||+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 197 (303)
T 2vwi_A 170 FLATGGDITRNKVRKTFVGTPCWMAPEV 197 (303)
T ss_dssp HCC---------------CCCTTCCHHH
T ss_pred eeccCCCccchhhhcccCCCccccCHHH
Confidence 76433211 1223469999999996
No 272
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.93 E-value=7.3e-27 Score=267.22 Aligned_cols=159 Identities=20% Similarity=0.188 Sum_probs=125.3
Q ss_pred eeeccCCceEEEEEec-CCcEEEEEEEeccc----------hhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEEE
Q 003301 666 LIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL----------EGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 666 ~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~----------~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 733 (832)
..+.|+.|.+..++.. .|+.||+|++.... +...+++.+|+++|+++ .|+||+++++++++++..|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 3556666666655432 48899999997542 23346799999999999 799999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||++|++|.+++++.+ .+++. +|+.||+.||+|+| ++|||||||||+|||++.+|.+||+|||+|+......
T Consensus 321 MEyv~G~~L~d~i~~~~-~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~ 393 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAGE-EIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC 393 (569)
T ss_dssp EECCCSEEHHHHHHTTC-CCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---
T ss_pred EecCCCCcHHHHHHhCC-CCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC
Confidence 99999999999998764 56654 58899999999999 9999999999999999999999999999998775543
Q ss_pred ccccccccccccccCCCCC
Q 003301 814 SMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~l 832 (832)
.. ....+||+.|||||++
T Consensus 394 ~~-~~t~vGTp~YmAPE~l 411 (569)
T 4azs_A 394 SW-PTNLVQSFFVFVNELF 411 (569)
T ss_dssp CC-SHHHHHHHHHHHHHHC
T ss_pred cc-ccCceechhhccHHHh
Confidence 32 3346799999999974
No 273
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.6e-26 Score=267.97 Aligned_cols=170 Identities=24% Similarity=0.451 Sum_probs=139.5
Q ss_pred cCCCCCC-eeeccCCceEEEEEec---CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 659 NQFNASN-LIGTGGFGSVYKGSFL---DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 659 ~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
+++.+.+ .||+|+||.||+|.+. ++..||||+++... ....+.+.+|++++++++||||+++++++.. +..|+|
T Consensus 335 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv 413 (613)
T 2ozo_A 335 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV 413 (613)
T ss_dssp TSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEE
T ss_pred cceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEE
Confidence 3444444 7999999999999875 35679999987643 3356789999999999999999999999976 568999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++|+|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+|+......
T Consensus 414 ~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~ 490 (613)
T 2ozo_A 414 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADD 490 (613)
T ss_dssp EECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC---
T ss_pred EEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCC
Confidence 9999999999999877667999999999999999999999 9999999999999999999999999999998764433
Q ss_pred ccc--cccccccccccCCCCC
Q 003301 814 SMK--QTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~--~~~~~gt~~y~APE~l 832 (832)
... .....+|+.|+|||++
T Consensus 491 ~~~~~~~~~~~~~~y~APE~~ 511 (613)
T 2ozo_A 491 SYYTARSAGKWPLKWYAPECI 511 (613)
T ss_dssp -----------CCTTSCHHHH
T ss_pred ceeeeccCCCCccceeCHhhh
Confidence 221 1223467899999963
No 274
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.7e-25 Score=234.84 Aligned_cols=206 Identities=25% Similarity=0.206 Sum_probs=137.8
Q ss_pred ccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCC
Q 003301 339 IGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLR 418 (832)
Q Consensus 339 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 418 (832)
+.++++++++++++|.++. +|..+. ++++.|+|++|++++..+..|..+++|++|+|++|.+++. +. .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 4455566666666666653 333332 4566666666666655556666666666666666666643 22 25666677
Q ss_pred eEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeeccccc
Q 003301 419 LLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNG 498 (832)
Q Consensus 419 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 498 (832)
.|++++|+++. +|..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 77777776663 45566666777777777777776666667777777777777777776666667777777777777777
Q ss_pred ccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccC
Q 003301 499 LQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEI 551 (832)
Q Consensus 499 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 551 (832)
|++..+..|..+++|+.|+|++|+|+ .+|..+..+..|+.++|++|+|.|.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 77655566677777777777777777 56666666777788888888877665
No 275
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=99.93 E-value=1.8e-26 Score=243.27 Aligned_cols=168 Identities=23% Similarity=0.298 Sum_probs=131.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch--hhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE--GALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.++|++.+.||+|+||.||+|.+. +++.||+|++..... ...+.+.++...++.++||||+++++++.+++..|+||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 478999999999999999999985 589999999875432 22334445555688889999999999999999999999
Q ss_pred ecCCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 735 EYMPNGSLEDYLYS---NNFSFDILQRLSVIIDVALALEYLHFGYSN-PVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 735 e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
||++ |+|.+++.. ....+++..+..++.|++.|++||| ++ ||+||||||+||+++.++.+||+|||.|+...
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 161 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 161 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence 9996 588887754 4457999999999999999999999 87 99999999999999999999999999998764
Q ss_pred CCcccccccccccccccCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~ 831 (832)
.... .....||+.|+|||+
T Consensus 162 ~~~~--~~~~~~t~~y~aPE~ 180 (290)
T 3fme_A 162 DDVA--KDIDAGCKPYMAPER 180 (290)
T ss_dssp ----------CCCCCCSCHHH
T ss_pred cccc--ccccCCCccccChhh
Confidence 4332 223469999999996
No 276
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=6.1e-26 Score=236.39 Aligned_cols=180 Identities=28% Similarity=0.314 Sum_probs=92.5
Q ss_pred CCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCccccee
Q 003301 365 KLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSL 444 (832)
Q Consensus 365 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 444 (832)
.+++|++|++++|++++. ..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|
T Consensus 61 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp GCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 333444444444444321 133444444444444444444444444444444444444444444444444444555555
Q ss_pred eecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCccc
Q 003301 445 NFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLS 524 (832)
Q Consensus 445 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 524 (832)
++++|++++..+..++.+++|+.|++++|++++..+..|+++++|+.|+|++|++++..|..|+.+++|+.|+|++|+++
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 55555555444444455555555555555555555555555666666666666666555555566666666666666665
Q ss_pred ccCchhhhhhccCCeeeCCCCcccccCCC
Q 003301 525 GNIPTSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 525 ~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
+..| .|+.++++.|.++|.+|.
T Consensus 219 ~~~~-------~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 219 CTCP-------GIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCTT-------TTHHHHHHHHHTGGGBBC
T ss_pred ccCc-------HHHHHHHHHHhCCCcccC
Confidence 4433 355566666666666665
No 277
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=99.93 E-value=1.9e-26 Score=249.02 Aligned_cols=169 Identities=24% Similarity=0.340 Sum_probs=142.5
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHH-HhcCCCCceeeeceEEecCCeeEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEV-LKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
..++|++.+.||+|+||.||+|.+. +|+.||||++.... ......+..|..+ ++.++||||+++++++..++..|+|
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 3478999999999999999999975 58999999997543 2233455556655 7788999999999999999999999
Q ss_pred EecCCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 734 LEYMPNGSLEDYLYS---NNFSFDILQRLSVIIDVALALEYLHFGYSN-PVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
|||+++ +|.+++.. ....+++..+..++.|++.||+||| ++ ||+||||||+||+++.++.+||+|||+|+..
T Consensus 129 ~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 204 (340)
T 3an0_A 129 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 204 (340)
T ss_dssp ECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCSCCSTTEEECSTTCEEECCCSHHHHH
T ss_pred HHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 999964 99888864 4457999999999999999999999 86 9999999999999999999999999999876
Q ss_pred CCCcccccccccccccccCCCC
Q 003301 810 SGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 810 ~~~~~~~~~~~~gt~~y~APE~ 831 (832)
.... ......||+.|+|||+
T Consensus 205 ~~~~--~~~~~~gt~~y~aPE~ 224 (340)
T 3an0_A 205 VDSV--AKTIDAGCKPYMAPER 224 (340)
T ss_dssp SCHH--HHHHSSCCCCCCCHHH
T ss_pred cccc--ccccCCCCccccCccc
Confidence 4322 2233469999999996
No 278
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4.6e-25 Score=229.55 Aligned_cols=185 Identities=25% Similarity=0.272 Sum_probs=130.3
Q ss_pred cccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCC
Q 003301 344 NLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLA 423 (832)
Q Consensus 344 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 423 (832)
++++|++++|++.+..+..|..+++|++|+|++|+++...+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45566666666655555556666666666666666664444445666666666666666665555566666777777777
Q ss_pred CCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccC
Q 003301 424 SNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSI 503 (832)
Q Consensus 424 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 503 (832)
+|.++++.+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 77777666666777777777777777777665666777778888888888887766677888888888888888888766
Q ss_pred CccccCCCCCCeeccCCCcccccCc
Q 003301 504 PKSIGGLVSLESLDLSNNSLSGNIP 528 (832)
Q Consensus 504 p~~~~~l~~L~~L~Ls~N~l~~~~p 528 (832)
+..|..+++|+.|+|++|++....+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HHHhccccCCCEEEecCCCeeCCCc
Confidence 6778888888888888888876544
No 279
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=99.93 E-value=2.4e-26 Score=243.46 Aligned_cols=169 Identities=28% Similarity=0.451 Sum_probs=144.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.++|++.+.||+|+||.||+|++. +++.||||++.... ....+.+.+|++++++++||||+++++++..++..|+||
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (299)
T 2r3i_A 2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF 81 (299)
T ss_dssp CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEE
Confidence 368999999999999999999986 58999999986543 223467889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 735 EYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
||++ ++|.+++.... ..+++..+..++.|++.|++||| +.|++||||||+||+++.++.+||+|||.+.......
T Consensus 82 e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 82 EFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp ECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred Eccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 9996 69999997653 35899999999999999999999 9999999999999999999999999999998764432
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
. ......||+.|+|||+
T Consensus 158 ~-~~~~~~~~~~y~aPE~ 174 (299)
T 2r3i_A 158 R-TYTHEVVTLWYRAPEI 174 (299)
T ss_dssp B-CTTSCBCCCTTCCHHH
T ss_pred c-ccCcccccccccCcHH
Confidence 2 2233468999999996
No 280
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.93 E-value=6e-26 Score=245.34 Aligned_cols=171 Identities=27% Similarity=0.452 Sum_probs=145.5
Q ss_pred HHHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhc--CCCCceeeeceEEecCC----
Q 003301 655 LQATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKS--VRHRNLVKIISSCTNND---- 728 (832)
Q Consensus 655 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~---- 728 (832)
....++|++.+.||+|+||.||+|++ +++.||||++.... .+.+.+|++++.. ++||||+++++++...+
T Consensus 38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~ 113 (342)
T 1b6c_B 38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT 113 (342)
T ss_dssp HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCC
T ss_pred ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchh---HHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccc
Confidence 34567899999999999999999998 69999999986442 3567788888877 78999999999998776
Q ss_pred eeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEecCCCCCCeEeCCCCcEEEecc
Q 003301 729 FKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFG-----YSNPVVHCDIKPSNVLLDKDMVAHLSDF 803 (832)
Q Consensus 729 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-----~~~~ivH~Dlkp~NIl~~~~~~~kl~DF 803 (832)
..|+||||+++|+|.+++.+. .+++..+..++.|++.|++|||.. ++.+|+||||||+||+++.++.+||+||
T Consensus 114 ~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 191 (342)
T 1b6c_B 114 QLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL 191 (342)
T ss_dssp CEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCC
T ss_pred eeEEEEeecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEEC
Confidence 789999999999999999865 489999999999999999999932 1479999999999999999999999999
Q ss_pred ccccccCCCccc---ccccccccccccCCCC
Q 003301 804 GIAKLLSGEESM---KQTLTLATIGYMAPGL 831 (832)
Q Consensus 804 g~a~~~~~~~~~---~~~~~~gt~~y~APE~ 831 (832)
|+|+........ ......||+.|+|||+
T Consensus 192 g~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 222 (342)
T 1b6c_B 192 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEV 222 (342)
T ss_dssp TTCEEEETTTTEEEECCCSCCCCGGGCCHHH
T ss_pred CCceeccccccccccccccCCcCcccCCHhh
Confidence 999876443321 1233569999999996
No 281
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.93 E-value=1.5e-26 Score=243.99 Aligned_cols=170 Identities=26% Similarity=0.433 Sum_probs=142.1
Q ss_pred HhcCCCCCC-eeeccCCceEEEEEec---CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 657 ATNQFNASN-LIGTGGFGSVYKGSFL---DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 657 ~~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
..++|++.+ .||+|+||.||+|.+. .++.||||++.... ....+.+.+|+++++.++||||+++++++ ..+..
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~ 92 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW 92 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence 346788888 9999999999999653 36889999987543 23357889999999999999999999999 55678
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
|+||||+++++|.+++...+ .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||+++...
T Consensus 93 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (291)
T 1xbb_A 93 MLVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALR 168 (291)
T ss_dssp EEEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEEeCCCCCHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence 99999999999999998754 6899999999999999999999 9999999999999999999999999999998765
Q ss_pred CCcccc--cccccccccccCCCC
Q 003301 811 GEESMK--QTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~~--~~~~~gt~~y~APE~ 831 (832)
...... .....+|+.|+|||+
T Consensus 169 ~~~~~~~~~~~~~~~~~y~aPE~ 191 (291)
T 1xbb_A 169 ADENYYKAQTHGKWPVKWYAPEC 191 (291)
T ss_dssp TTCSEEEC----CCCGGGCCHHH
T ss_pred cCCCcccccccCCCCceeeChHH
Confidence 443321 222346789999996
No 282
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=99.93 E-value=2.9e-26 Score=250.33 Aligned_cols=165 Identities=24% Similarity=0.319 Sum_probs=133.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCC------
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNND------ 728 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 728 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 468999999999999999999876 48899999997542 334567889999999999999999999997654
Q ss_pred eeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 729 FKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 729 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
..|+||||++ ++|.+++.. .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+.
T Consensus 104 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 176 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLART 176 (371)
T ss_dssp EEEEEEECCS-EEHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred ceEEEEEcCC-CCHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence 7899999996 588888863 4899999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCcccccccccccccccCCCC
Q 003301 809 LSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 809 ~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
..... .....+||+.|+|||+
T Consensus 177 ~~~~~--~~~~~~gt~~y~aPE~ 197 (371)
T 2xrw_A 177 AGTSF--MMTPYVVTRYYRAPEV 197 (371)
T ss_dssp ---------------CTTCCHHH
T ss_pred ccccc--ccCCceecCCccCHHH
Confidence 64332 2233579999999996
No 283
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=99.93 E-value=2.5e-26 Score=246.42 Aligned_cols=174 Identities=22% Similarity=0.302 Sum_probs=145.3
Q ss_pred HHHHHhcCCCCC-CeeeccCCceEEEEEec-CCcEEEEEEEeccch--hhHHHHHHHHHHHhcCC-CCceeeeceEEecC
Q 003301 653 ELLQATNQFNAS-NLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE--GALKSFDVECEVLKSVR-HRNLVKIISSCTNN 727 (832)
Q Consensus 653 ~~~~~~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~ 727 (832)
......++|.+. +.||+|+||.||+|.+. +++.||+|++..... .....+.+|+.+++.+. ||||+++++++.+.
T Consensus 22 ~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~ 101 (327)
T 3lm5_A 22 SMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENT 101 (327)
T ss_dssp CHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred HHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC
Confidence 334556778877 89999999999999886 489999999875432 33568889999999994 69999999999999
Q ss_pred CeeEEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCcEEEecc
Q 003301 728 DFKALVLEYMPNGSLEDYLYSN-NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK---DMVAHLSDF 803 (832)
Q Consensus 728 ~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~DF 803 (832)
+..|+||||+++|+|.+++... ...+++..+..++.|++.||+||| ++||+||||||+||+++. ++.+||+||
T Consensus 102 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Df 178 (327)
T 3lm5_A 102 SEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDF 178 (327)
T ss_dssp SEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCG
T ss_pred CeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeC
Confidence 9999999999999999998653 346899999999999999999999 999999999999999987 789999999
Q ss_pred ccccccCCCcccccccccccccccCCCC
Q 003301 804 GIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 804 g~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
|+|+....... .....||+.|+|||+
T Consensus 179 g~a~~~~~~~~--~~~~~gt~~y~aPE~ 204 (327)
T 3lm5_A 179 GMSRKIGHACE--LREIMGTPEYLAPEI 204 (327)
T ss_dssp GGCEEC-----------CCCGGGCCHHH
T ss_pred ccccccCCccc--cccccCCcCccCCee
Confidence 99987644322 233569999999996
No 284
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.93 E-value=1e-26 Score=243.57 Aligned_cols=170 Identities=28% Similarity=0.422 Sum_probs=144.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEe--cCCeeEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCT--NNDFKAL 732 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~l 732 (832)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++. ..+..|+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 468999999999999999999886 58999999997543 344567899999999999999999999874 4678999
Q ss_pred EEecCCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-----eEecCCCCCCeEeCCCCcEEEeccc
Q 003301 733 VLEYMPNGSLEDYLYSN---NFSFDILQRLSVIIDVALALEYLHFGYSNP-----VVHCDIKPSNVLLDKDMVAHLSDFG 804 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~Dlkp~NIl~~~~~~~kl~DFg 804 (832)
||||+++++|.+++... ...+++..+..++.|++.|++||| +.+ |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 99999999999998753 234899999999999999999999 888 9999999999999999999999999
Q ss_pred cccccCCCcccccccccccccccCCCC
Q 003301 805 IAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 805 ~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
.++........ .....||+.|+|||+
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~~y~aPE~ 187 (279)
T 2w5a_A 162 LARILNHDTSF-AKTFVGTPYYMSPEQ 187 (279)
T ss_dssp HHHHC---CHH-HHHHHSCCTTCCHHH
T ss_pred hheeecccccc-ccccCCCccccChHH
Confidence 99876543321 223469999999996
No 285
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=99.93 E-value=1e-26 Score=251.46 Aligned_cols=169 Identities=24% Similarity=0.258 Sum_probs=137.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEec----CCcEEEEEEEeccchh-----------hHHHHHHHHHHHhcCCCCceeeece
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL----DGMEVAIKVFHLQLEG-----------ALKSFDVECEVLKSVRHRNLVKIIS 722 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv~l~~ 722 (832)
.++|++.+.||+|+||.||+|.+. .+..||+|++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 367999999999999999999986 4688999998754321 1234667888999999999999999
Q ss_pred EEec----CCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC--
Q 003301 723 SCTN----NDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM-- 796 (832)
Q Consensus 723 ~~~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~-- 796 (832)
++.. ....|+||||+ +++|.+++...+ .+++..+..++.|++.||+||| +.||+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~ 190 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPD 190 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTT
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCC
Confidence 9987 67899999999 999999998765 7999999999999999999999 99999999999999998887
Q ss_pred cEEEeccccccccCCCccc------ccccccccccccCCCC
Q 003301 797 VAHLSDFGIAKLLSGEESM------KQTLTLATIGYMAPGL 831 (832)
Q Consensus 797 ~~kl~DFg~a~~~~~~~~~------~~~~~~gt~~y~APE~ 831 (832)
.+||+|||+|+.+...... ......||+.|+|||+
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 231 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDA 231 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHH
Confidence 9999999999876432211 1133579999999996
No 286
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=99.93 E-value=4.8e-26 Score=244.77 Aligned_cols=162 Identities=21% Similarity=0.397 Sum_probs=142.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCC-CCceeeeceEEec--CCeeEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVR-HRNLVKIISSCTN--NDFKALV 733 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv 733 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++.... .+.+.+|++++++++ ||||+++++++.+ ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 378999999999999999999875 58999999987433 367889999999997 9999999999987 6678999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-cEEEeccccccccCCC
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDM-VAHLSDFGIAKLLSGE 812 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~-~~kl~DFg~a~~~~~~ 812 (832)
|||+++++|.++++. +++..+..++.|++.|++||| ++||+||||||+||+++.++ .+||+|||+|+.....
T Consensus 112 ~e~~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~ 184 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG 184 (330)
T ss_dssp EECCCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred EeccCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence 999999999999853 789999999999999999999 99999999999999999776 8999999999876543
Q ss_pred cccccccccccccccCCCC
Q 003301 813 ESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~~~~~~~~gt~~y~APE~ 831 (832)
.. .....||+.|+|||+
T Consensus 185 ~~--~~~~~~~~~y~aPE~ 201 (330)
T 3nsz_A 185 QE--YNVRVASRYFKGPEL 201 (330)
T ss_dssp CC--CCSCCSCGGGCCHHH
T ss_pred Cc--cccccccccccChhh
Confidence 32 233569999999996
No 287
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=99.93 E-value=1.2e-26 Score=252.45 Aligned_cols=164 Identities=26% Similarity=0.386 Sum_probs=125.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecC------C
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNN------D 728 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~ 728 (832)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+++++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 478999999999999999999875 58999999986532 33456788999999999999999999998654 5
Q ss_pred eeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 729 FKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 729 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
..|+||||+ +++|.++++.. .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||+|+.
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~ 181 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARH 181 (367)
T ss_dssp CCEEEEECC-CEECC-----C--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC------
T ss_pred eEEEEeccc-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeecccccc
Confidence 679999999 78999998763 5899999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCcccccccccccccccCCCC
Q 003301 809 LSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 809 ~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
.... ....+||+.|+|||+
T Consensus 182 ~~~~----~~~~~~t~~y~aPE~ 200 (367)
T 2fst_X 182 TADE----MTGYVATRWYRAPEI 200 (367)
T ss_dssp -------------CCCTTCCHHH
T ss_pred cccc----CCCcCcCcCccChHH
Confidence 5432 233579999999996
No 288
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.93 E-value=3.6e-26 Score=243.77 Aligned_cols=174 Identities=24% Similarity=0.485 Sum_probs=135.3
Q ss_pred HHHhcCCCCCCeeeccCCceEEEEEecC----CcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCC
Q 003301 655 LQATNQFNASNLIGTGGFGSVYKGSFLD----GMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNND 728 (832)
Q Consensus 655 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 728 (832)
....++|++.+.||+|+||.||+|.+.. ++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~ 109 (313)
T 3brb_A 30 VIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS 109 (313)
T ss_dssp BCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC--
T ss_pred ccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecc
Confidence 3345789999999999999999997653 4579999987543 334567889999999999999999999998755
Q ss_pred -----eeEEEEecCCCCCHHHHHhh-----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcE
Q 003301 729 -----FKALVLEYMPNGSLEDYLYS-----NNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVA 798 (832)
Q Consensus 729 -----~~~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 798 (832)
..|+||||+++++|.+++.. ....+++..++.++.|++.||+||| ++||+||||||+||+++.++.+
T Consensus 110 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~ 186 (313)
T 3brb_A 110 SQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTV 186 (313)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCE
T ss_pred ccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcE
Confidence 35999999999999999853 2345899999999999999999999 9999999999999999999999
Q ss_pred EEeccccccccCCCccc-ccccccccccccCCCC
Q 003301 799 HLSDFGIAKLLSGEESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 799 kl~DFg~a~~~~~~~~~-~~~~~~gt~~y~APE~ 831 (832)
||+|||+++........ ......+++.|+|||+
T Consensus 187 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 220 (313)
T 3brb_A 187 CVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIES 220 (313)
T ss_dssp EECSCSCC----------------CCGGGSCHHH
T ss_pred EEeecCcceecccccccCcccccCCCccccCchh
Confidence 99999999876443321 2233457889999996
No 289
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=99.93 E-value=6.6e-26 Score=240.81 Aligned_cols=171 Identities=23% Similarity=0.369 Sum_probs=142.0
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc----hhhHHHHHHHHHHHhcCCCCceeeeceEEe--cCCe
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL----EGALKSFDVECEVLKSVRHRNLVKIISSCT--NNDF 729 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~ 729 (832)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++. +.+.
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 82 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK 82 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence 3578999999999999999999985 48899999997543 234578899999999999999999999984 4557
Q ss_pred eEEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 730 KALVLEYMPNGSLEDYLYSN-NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
.|+||||++++ +.+++... ...+++..+..++.|++.|++||| ++||+||||||+||+++.++.+||+|||.+..
T Consensus 83 ~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~ 158 (305)
T 2wtk_C 83 MYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEA 158 (305)
T ss_dssp EEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeeccccccc
Confidence 89999999765 77777653 346899999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCc-ccccccccccccccCCCC
Q 003301 809 LSGEE-SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 809 ~~~~~-~~~~~~~~gt~~y~APE~ 831 (832)
..... ........||+.|+|||+
T Consensus 159 ~~~~~~~~~~~~~~~~~~y~aPE~ 182 (305)
T 2wtk_C 159 LHPFAADDTCRTSQGSPAFQPPEI 182 (305)
T ss_dssp CCTTCSSCEECCCCSCGGGCCHHH
T ss_pred cCccccccccccCCCCCCCcChhh
Confidence 64322 112233569999999996
No 290
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.93 E-value=2.5e-26 Score=267.89 Aligned_cols=171 Identities=27% Similarity=0.444 Sum_probs=143.3
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecC----CcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLD----GMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKA 731 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 731 (832)
..++|++.+.||+|+||.||+|.+.. +..||+|++.... ....+.+.+|+.++++++||||+++++++. ++..|
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~ 466 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 466 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceE
Confidence 34779999999999999999998753 4579999876543 334578899999999999999999999985 45689
Q ss_pred EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCC
Q 003301 732 LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~ 811 (832)
+||||+++|+|.++++..+..+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||+|+....
T Consensus 467 lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~ 543 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 543 (656)
T ss_dssp EEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC
T ss_pred EEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeecCC
Confidence 999999999999999877667999999999999999999999 99999999999999999999999999999987755
Q ss_pred CcccccccccccccccCCCC
Q 003301 812 EESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 812 ~~~~~~~~~~gt~~y~APE~ 831 (832)
..........+|+.|||||+
T Consensus 544 ~~~~~~~~~~~t~~y~aPE~ 563 (656)
T 2j0j_A 544 STYYKASKGKLPIKWMAPES 563 (656)
T ss_dssp ----------CCGGGCCHHH
T ss_pred CcceeccCCCCCcceeCHHH
Confidence 44333334567889999996
No 291
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=99.93 E-value=4.5e-26 Score=240.95 Aligned_cols=169 Identities=27% Similarity=0.452 Sum_probs=139.4
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEE-ecCCeeEEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSC-TNNDFKALVL 734 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ 734 (832)
..++|++.+.||+|+||.||+|.+. +++.||||++...... +.+.+|+++++.++|++++..++++ ...+..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C--CCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc--hHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 4578999999999999999999974 5899999987654322 4678899999999988776666655 6677889999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCcEEEeccccccccCC
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL---DKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~DFg~a~~~~~ 811 (832)
||+ +++|.+++......+++..+..++.|++.|++||| ++||+||||||+||++ +.++.+||+|||.|+....
T Consensus 85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~ 160 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp ECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred Ecc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccC
Confidence 999 99999999876667999999999999999999999 9999999999999999 7889999999999987654
Q ss_pred Cccc------ccccccccccccCCCC
Q 003301 812 EESM------KQTLTLATIGYMAPGL 831 (832)
Q Consensus 812 ~~~~------~~~~~~gt~~y~APE~ 831 (832)
.... ......||+.|+|||+
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~ 186 (296)
T 4hgt_A 161 ARTHQHIPYRENKNLTGTARYASINT 186 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCGGGCCHHH
T ss_pred cccCccCCCCcccccCCCccccchHH
Confidence 3321 1223579999999996
No 292
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=254.62 Aligned_cols=168 Identities=23% Similarity=0.328 Sum_probs=127.1
Q ss_pred cCCCC-CCeeeccCCceEEEEEec---CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEe--cCCeeEE
Q 003301 659 NQFNA-SNLIGTGGFGSVYKGSFL---DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCT--NNDFKAL 732 (832)
Q Consensus 659 ~~~~~-~~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~l 732 (832)
+.|++ +++||+|+||+||+|++. +++.||||++..... ...+.+|++++++++||||+++++++. .+...|+
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 45665 568999999999999975 478899999865432 356789999999999999999999995 4678999
Q ss_pred EEecCCCCCHHHHHhhC--------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe----CCCCcEEE
Q 003301 733 VLEYMPNGSLEDYLYSN--------NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL----DKDMVAHL 800 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~----~~~~~~kl 800 (832)
||||++ ++|.+++... ...+++..+..++.|++.||+||| +.||+||||||+||++ +.++.+||
T Consensus 98 v~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 98 LFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEE
Confidence 999995 6888887531 124899999999999999999999 9999999999999999 67789999
Q ss_pred eccccccccCCCcc--cccccccccccccCCCCC
Q 003301 801 SDFGIAKLLSGEES--MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 801 ~DFg~a~~~~~~~~--~~~~~~~gt~~y~APE~l 832 (832)
+|||+|+....... ......+||+.|+|||++
T Consensus 174 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~ 207 (405)
T 3rgf_A 174 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELL 207 (405)
T ss_dssp CCTTCCC----------------CCCTTCCHHHH
T ss_pred EECCCceecCCCCcccccCCCceecCcccCchhh
Confidence 99999987643321 122345799999999963
No 293
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.9e-25 Score=232.67 Aligned_cols=227 Identities=25% Similarity=0.265 Sum_probs=183.5
Q ss_pred CCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEc
Q 003301 295 NLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDL 374 (832)
Q Consensus 295 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 374 (832)
++..+++..+.+.+.. ....+. +|+.|++++|.++.. ..+..+++|++|++++|.+.+. ..+..+++|++|+|
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~-~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELN-SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHT-TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCccccccc--cccccc-ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 3444555555554332 233444 788999999888743 3578888999999999988863 37888889999999
Q ss_pred cCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCC
Q 003301 375 VNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGS 454 (832)
Q Consensus 375 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 454 (832)
++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 99999877777788889999999999999887777788899999999999999888888888889999999999999887
Q ss_pred CccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhh
Q 003301 455 LPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKL 534 (832)
Q Consensus 455 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 534 (832)
.+..++.+++|+.|++++|++++..|..|..+++|+.|+|++|.+.+. +++|+.|+++.|.++|.+|.+++.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 777788889999999999999888888888899999999999988754 4578888999999999998887765
Q ss_pred c
Q 003301 535 L 535 (832)
Q Consensus 535 ~ 535 (832)
.
T Consensus 246 ~ 246 (272)
T 3rfs_A 246 A 246 (272)
T ss_dssp C
T ss_pred C
Confidence 4
No 294
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.93 E-value=5.4e-26 Score=243.25 Aligned_cols=168 Identities=27% Similarity=0.398 Sum_probs=137.5
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEe-----------
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCT----------- 725 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----------- 725 (832)
.++|++.+.||+|+||.||+|.+.. ++.||+|++........+.+.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 4689999999999999999999875 8999999998776666788999999999999999999999874
Q ss_pred ---cCCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCcEEEe
Q 003301 726 ---NNDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLD-KDMVAHLS 801 (832)
Q Consensus 726 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~-~~~~~kl~ 801 (832)
+.+..|+||||++ |+|.++++.. .+++..+..++.|++.|++||| ++||+||||||+||+++ .++.+||+
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~ 163 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG--PLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIG 163 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEEEC
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC--CccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEEEc
Confidence 3467899999996 6999999753 5899999999999999999999 99999999999999997 56799999
Q ss_pred ccccccccCCCccc--ccccccccccccCCCC
Q 003301 802 DFGIAKLLSGEESM--KQTLTLATIGYMAPGL 831 (832)
Q Consensus 802 DFg~a~~~~~~~~~--~~~~~~gt~~y~APE~ 831 (832)
|||.++........ ......+|+.|+|||+
T Consensus 164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 195 (320)
T 2i6l_A 164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSPRL 195 (320)
T ss_dssp CCTTCBCC--------CCCGGGSCCTTCCHHH
T ss_pred cCccccccCCCcccccccccccccccccCcHH
Confidence 99999876432211 1223457999999995
No 295
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.93 E-value=3e-26 Score=245.98 Aligned_cols=171 Identities=27% Similarity=0.430 Sum_probs=141.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec------CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL------DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
.++|++.+.||+|+||.||+|++. +++.||||++.... ......+.+|+.++++++||||+++++++...+..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 478999999999999999999842 47789999986442 34456788999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCC------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCcEEEe
Q 003301 731 ALVLEYMPNGSLEDYLYSNN------FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK---DMVAHLS 801 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~ 801 (832)
|+||||+++++|.+++.... ..+++..+..++.|++.|++||| +.||+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEEC
Confidence 99999999999999998654 34889999999999999999999 999999999999999984 4469999
Q ss_pred ccccccccCCCcc-cccccccccccccCCCC
Q 003301 802 DFGIAKLLSGEES-MKQTLTLATIGYMAPGL 831 (832)
Q Consensus 802 DFg~a~~~~~~~~-~~~~~~~gt~~y~APE~ 831 (832)
|||.++....... .......||+.|+|||+
T Consensus 186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 216 (327)
T 2yfx_A 186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEA 216 (327)
T ss_dssp CCHHHHHHHC------CCGGGSCGGGCCHHH
T ss_pred ccccccccccccccccCCCcCCCcceeCHhH
Confidence 9999976533221 12223468999999996
No 296
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.93 E-value=1.6e-26 Score=241.90 Aligned_cols=164 Identities=34% Similarity=0.495 Sum_probs=135.5
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecC-CeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNN-DFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e~ 736 (832)
.++|++.+.||+|+||.||+|++ +++.||||++.... ..+.+.+|++++++++||||+++++++.+. +..|+||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 47899999999999999999988 58899999987543 447789999999999999999999987554 478999999
Q ss_pred CCCCCHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccc
Q 003301 737 MPNGSLEDYLYSNNF-SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESM 815 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~ 815 (832)
+++++|.+++..... .+++..+..++.|++.|++||| ++|++||||||+||+++.++.+||+|||.+.......
T Consensus 97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-- 171 (278)
T 1byg_A 97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-- 171 (278)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeeccccccccccc--
Confidence 999999999976432 2789999999999999999999 9999999999999999999999999999998654322
Q ss_pred ccccccccccccCCCC
Q 003301 816 KQTLTLATIGYMAPGL 831 (832)
Q Consensus 816 ~~~~~~gt~~y~APE~ 831 (832)
....+++.|+|||+
T Consensus 172 --~~~~~~~~y~aPE~ 185 (278)
T 1byg_A 172 --DTGKLPVKWTAPEA 185 (278)
T ss_dssp ------CCTTTSCHHH
T ss_pred --cCCCccccccCHHH
Confidence 22357889999996
No 297
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=99.93 E-value=7.6e-26 Score=251.45 Aligned_cols=166 Identities=22% Similarity=0.349 Sum_probs=142.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccchhhHHHHHHHHHHHhcC------CCCceeeeceEEecCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLEGALKSFDVECEVLKSV------RHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~l~~~~~~~~~~ 730 (832)
..+|++.+.||+|+||.||+|.+.. ++.||||++.... ...+.+.+|+++++.+ .|+||+++++++...+..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 4679999999999999999998764 8999999997543 3345677788887776 577999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc--EEEecccccc
Q 003301 731 ALVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV--AHLSDFGIAK 807 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~--~kl~DFg~a~ 807 (832)
|+||||++ ++|.+++.... ..+++..+..++.|++.||+||| +.||+||||||+||+++.++. +||+|||+|+
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~ 250 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSC 250 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecccce
Confidence 99999995 69999988754 34899999999999999999999 999999999999999999987 9999999997
Q ss_pred ccCCCcccccccccccccccCCCCC
Q 003301 808 LLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 808 ~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
..... ....+||+.|+|||++
T Consensus 251 ~~~~~----~~~~~gt~~y~aPE~~ 271 (429)
T 3kvw_A 251 YEHQR----VYTYIQSRFYRAPEVI 271 (429)
T ss_dssp ETTCC----CCSSCSCGGGCCHHHH
T ss_pred ecCCc----ccccCCCCCccChHHH
Confidence 65332 2235799999999963
No 298
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=99.93 E-value=2.6e-26 Score=242.10 Aligned_cols=170 Identities=26% Similarity=0.410 Sum_probs=136.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC--Cc--EEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD--GM--EVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~--~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
.++|++.+.||+|+||.||+|++.. ++ .||||+++... ....+.+.+|++++++++||||+++++++..+. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 4679999999999999999998642 33 68999887542 344578899999999999999999999998765 8
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
++||||+++++|.+++......+++..+..++.|++.|++||| ++|++||||||+||+++.++.+||+|||.++...
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 172 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALP 172 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEcccccccccc
Confidence 9999999999999999876556899999999999999999999 9999999999999999999999999999998775
Q ss_pred CCccc--ccccccccccccCCCC
Q 003301 811 GEESM--KQTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~--~~~~~~gt~~y~APE~ 831 (832)
..... ......+|+.|+|||+
T Consensus 173 ~~~~~~~~~~~~~~~~~y~aPE~ 195 (291)
T 1u46_A 173 QNDDHYVMQEHRKVPFAWCAPES 195 (291)
T ss_dssp C-CCEEEC-----CCGGGCCHHH
T ss_pred ccccchhhhccCCCCceeeCchh
Confidence 43322 1223457889999996
No 299
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=99.93 E-value=3.8e-26 Score=251.21 Aligned_cols=164 Identities=31% Similarity=0.460 Sum_probs=135.6
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCC------eeE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNND------FKA 731 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~ 731 (832)
..+|++.+.||+|+||+||+|++..+..||+|++..... ...+|+++++.++||||+++++++...+ ..|
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 357999999999999999999998877899998865432 2236999999999999999999985433 378
Q ss_pred EEEecCCCCCHHHHHh---hCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCcEEEecccccc
Q 003301 732 LVLEYMPNGSLEDYLY---SNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLD-KDMVAHLSDFGIAK 807 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~-~~~~~kl~DFg~a~ 807 (832)
+||||+++ ++.+.+. .....+++..+..++.|++.||+||| ++||+||||||+||+++ .++.+||+|||+|+
T Consensus 115 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~ 190 (394)
T 4e7w_A 115 LVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAK 190 (394)
T ss_dssp EEEECCSE-EHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred EEeeccCc-cHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence 99999976 4444332 23446999999999999999999999 99999999999999998 79999999999998
Q ss_pred ccCCCcccccccccccccccCCCC
Q 003301 808 LLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 808 ~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
....... ....+||+.|+|||+
T Consensus 191 ~~~~~~~--~~~~~~t~~y~aPE~ 212 (394)
T 4e7w_A 191 ILIAGEP--NVSYICSRYYRAPEL 212 (394)
T ss_dssp ECCTTCC--CCSSCSCGGGCCHHH
T ss_pred cccCCCC--CcccccCcCccCHHH
Confidence 7644332 223568999999996
No 300
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=99.93 E-value=7.9e-26 Score=239.06 Aligned_cols=168 Identities=27% Similarity=0.454 Sum_probs=142.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEE-ecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSC-TNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~e 735 (832)
.++|++.+.||+|+||.||+|++. +++.||||++..... .+.+.+|+++++.++|++++..+.++ ...+..|+|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 478999999999999999999974 689999999875533 25688999999999988766665554 66778899999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCcEEEeccccccccCCC
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL---DKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~DFg~a~~~~~~ 812 (832)
|+ +++|.+++......+++..+..++.|++.|++||| ++||+||||||+||++ +.++.+||+|||.|+.....
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~ 161 (296)
T 3uzp_A 86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 161 (296)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred ec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence 99 99999999866667999999999999999999999 9999999999999999 48899999999999876543
Q ss_pred ccc------ccccccccccccCCCC
Q 003301 813 ESM------KQTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~~------~~~~~~gt~~y~APE~ 831 (832)
... ......||+.|+|||+
T Consensus 162 ~~~~~~~~~~~~~~~gt~~y~aPE~ 186 (296)
T 3uzp_A 162 RTHQHIPYRENKNLTGTARYASINT 186 (296)
T ss_dssp TTCCBCCCCCSCCCCSCTTTCCHHH
T ss_pred ccccccccccccccccccccCChhh
Confidence 321 1234579999999996
No 301
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.6e-26 Score=250.82 Aligned_cols=165 Identities=17% Similarity=0.231 Sum_probs=140.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC---------CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceee---------
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD---------GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVK--------- 719 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~--------- 719 (832)
.++|++.+.||+|+||.||+|.+.. ++.||+|++... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 3689999999999999999998864 789999998754 46778999999999999988
Q ss_pred ------eceEEec-CCeeEEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeE
Q 003301 720 ------IISSCTN-NDFKALVLEYMPNGSLEDYLYSN-NFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVL 791 (832)
Q Consensus 720 ------l~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl 791 (832)
+++++.. ++..|+||||+ +++|.+++... ...+++..+..++.|++.||+||| ++||+||||||+||+
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIl 191 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAENIF 191 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGGEE
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEE
Confidence 5677765 67899999999 99999999875 246999999999999999999999 999999999999999
Q ss_pred eCCCC--cEEEeccccccccCCCccc------ccccccccccccCCCC
Q 003301 792 LDKDM--VAHLSDFGIAKLLSGEESM------KQTLTLATIGYMAPGL 831 (832)
Q Consensus 792 ~~~~~--~~kl~DFg~a~~~~~~~~~------~~~~~~gt~~y~APE~ 831 (832)
++.++ .+||+|||+|+........ ......||+.|+|||+
T Consensus 192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 239 (352)
T 2jii_A 192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDL 239 (352)
T ss_dssp EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHH
T ss_pred EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHH
Confidence 99998 9999999999876433211 1123479999999996
No 302
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.93 E-value=7.3e-26 Score=245.83 Aligned_cols=168 Identities=24% Similarity=0.336 Sum_probs=142.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecC-----Cee
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNN-----DFK 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~ 730 (832)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ......+.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 478999999999999999999986 48999999986433 33456788999999999999999999988654 678
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
|+||||++ ++|.+++... .+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+|||.|+...
T Consensus 90 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ--MLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID 163 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEeccC-ccHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence 99999996 6999999874 5899999999999999999999 9999999999999999999999999999998764
Q ss_pred CCccc---------ccccccccccccCCCC
Q 003301 811 GEESM---------KQTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~---------~~~~~~gt~~y~APE~ 831 (832)
..... .....+||+.|+|||+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 193 (353)
T 2b9h_A 164 ESAADNSEPTGQQSGMVEFVATRWYRAPEV 193 (353)
T ss_dssp ----------------CCCCCCGGGCCHHH
T ss_pred cccccccCccccccchhhccccccccCCee
Confidence 32211 1122468999999995
No 303
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=99.93 E-value=2.5e-26 Score=251.03 Aligned_cols=167 Identities=13% Similarity=0.125 Sum_probs=124.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch---hhHHHHHHHHHHHhcC--CCCceeeec-------eEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE---GALKSFDVECEVLKSV--RHRNLVKII-------SSC 724 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l--~h~niv~l~-------~~~ 724 (832)
..+|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|+++++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 356899999999999999999976 589999999986542 3345677785444433 799988755 444
Q ss_pred ecC-----------------CeeEEEEecCCCCCHHHHHhhCCCCCCHHHH------HHHHHHHHHHHHHHhcCCCCCeE
Q 003301 725 TNN-----------------DFKALVLEYMPNGSLEDYLYSNNFSFDILQR------LSVIIDVALALEYLHFGYSNPVV 781 (832)
Q Consensus 725 ~~~-----------------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~------~~i~~~i~~~l~~LH~~~~~~iv 781 (832)
... ...|+||||++ |+|.+++...+..+++..+ ..++.|++.||+||| ++||+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~iv 216 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLV 216 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCc
Confidence 433 33799999997 8999999864334455555 677899999999999 99999
Q ss_pred ecCCCCCCeEeCCCCcEEEeccccccccCCCcccccccccccccccCCCCC
Q 003301 782 HCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 782 H~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
||||||+||+++.++.+||+|||+|+...... ....+|+.|+|||++
T Consensus 217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~~~----~~~~~t~~y~aPE~~ 263 (371)
T 3q60_A 217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGTRG----PASSVPVTYAPREFL 263 (371)
T ss_dssp ETTCSGGGEEECTTSCEEECCGGGEEETTCEE----EGGGSCGGGCCHHHH
T ss_pred cCcCCHHHEEECCCCCEEEEecceeeecCCCc----cCccCCcCCcChhhc
Confidence 99999999999999999999999998764322 134577999999963
No 304
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=99.93 E-value=6.8e-26 Score=251.27 Aligned_cols=163 Identities=29% Similarity=0.452 Sum_probs=134.7
Q ss_pred cCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecC------CeeE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNN------DFKA 731 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~ 731 (832)
.+|++.+.||+|+||.||+|++. +++.||||++..... ...+|+++++.++||||+++++++... ...+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 46889999999999999999986 489999999865432 234699999999999999999988532 2467
Q ss_pred EEEecCCCCCHHHHHh---hCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CcEEEecccccc
Q 003301 732 LVLEYMPNGSLEDYLY---SNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKD-MVAHLSDFGIAK 807 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~-~~~kl~DFg~a~ 807 (832)
+||||+++ ++.+++. .....+++..+..++.|++.||+||| ++||+||||||+|||++.+ +.+||+|||+|+
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~ 205 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK 205 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence 99999964 6766654 23456999999999999999999999 9999999999999999965 678999999998
Q ss_pred ccCCCcccccccccccccccCCCC
Q 003301 808 LLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 808 ~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
....... ....+||+.|+|||+
T Consensus 206 ~~~~~~~--~~~~~~t~~y~aPE~ 227 (420)
T 1j1b_A 206 QLVRGEP--NVSYICSRYYRAPEL 227 (420)
T ss_dssp ECCTTCC--CCSCCSCTTSCCHHH
T ss_pred hcccCCC--ceeeeeCCCcCCHHH
Confidence 7644332 233579999999996
No 305
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.93 E-value=8.5e-26 Score=237.65 Aligned_cols=169 Identities=25% Similarity=0.398 Sum_probs=147.0
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
..++|++.+.||+|+||.||+|++. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 99 (287)
T 2wei_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (287)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence 4578999999999999999999986 58999999987543 23457888999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC---CcEEEeccccccccC
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKD---MVAHLSDFGIAKLLS 810 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~---~~~kl~DFg~a~~~~ 810 (832)
|||+++++|.+++.... .+++..+..++.|++.|++||| +.|++||||||+||+++.+ +.+||+|||.+....
T Consensus 100 ~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~ 175 (287)
T 2wei_A 100 GELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (287)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBC
T ss_pred EEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcceeec
Confidence 99999999999887654 6899999999999999999999 9999999999999999754 479999999998764
Q ss_pred CCcccccccccccccccCCCC
Q 003301 811 GEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~~~~~~~~~gt~~y~APE~ 831 (832)
.... .....||+.|+|||+
T Consensus 176 ~~~~--~~~~~~~~~y~aPE~ 194 (287)
T 2wei_A 176 QNTK--MKDRIGTAYYIAPEV 194 (287)
T ss_dssp CCSS--CSCHHHHHTTCCHHH
T ss_pred CCCc--cccccCcccccChHH
Confidence 4332 223458999999996
No 306
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.92 E-value=5.5e-26 Score=264.01 Aligned_cols=163 Identities=28% Similarity=0.455 Sum_probs=135.3
Q ss_pred CeeeccCCceEEEEEec---CCcEEEEEEEeccch--hhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEEecCCC
Q 003301 665 NLIGTGGFGSVYKGSFL---DGMEVAIKVFHLQLE--GALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVLEYMPN 739 (832)
Q Consensus 665 ~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 739 (832)
+.||+|+||.||+|.+. .++.||||+++.... ...+.+.+|++++++++|||||++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999664 367899999976432 345789999999999999999999999965 457899999999
Q ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCccc--cc
Q 003301 740 GSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESM--KQ 817 (832)
Q Consensus 740 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~--~~ 817 (832)
|+|.+++...+ .+++..+..++.||+.||+||| ++||+||||||+||+++.++.+||+|||+|+........ ..
T Consensus 454 g~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~ 529 (635)
T 4fl3_A 454 GPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 529 (635)
T ss_dssp EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC--------
T ss_pred CCHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccc
Confidence 99999998654 6899999999999999999999 999999999999999999999999999999876543321 22
Q ss_pred ccccccccccCCCCC
Q 003301 818 TLTLATIGYMAPGLF 832 (832)
Q Consensus 818 ~~~~gt~~y~APE~l 832 (832)
....||+.|+|||++
T Consensus 530 ~~~~~t~~y~APE~~ 544 (635)
T 4fl3_A 530 THGKWPVKWYAPECI 544 (635)
T ss_dssp -----CGGGSCHHHH
T ss_pred cCCCCceeeeChhhh
Confidence 234578899999963
No 307
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=99.92 E-value=1.4e-25 Score=251.21 Aligned_cols=168 Identities=24% Similarity=0.385 Sum_probs=143.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCC-CceeeeceEEecCCeeEEEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRH-RNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e 735 (832)
.++|++.++||+|+||.||+|.+. +++.||||++...... +.+.+|+++++.++| ++++.+..++...+..|+|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~--~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH--PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS--CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc--HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 468999999999999999999975 5899999988755432 457889999999987 566666677778889999999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCcEEEeccccccccCCC
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL---DKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~DFg~a~~~~~~ 812 (832)
|+ +++|.+++......+++..++.++.||+.||+||| ++||+||||||+|||+ +.++.+||+|||+|+.+...
T Consensus 84 ~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~ 159 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT 159 (483)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred CC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence 99 99999999876667999999999999999999999 9999999999999999 68899999999999876543
Q ss_pred ccc------ccccccccccccCCCC
Q 003301 813 ESM------KQTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~~------~~~~~~gt~~y~APE~ 831 (832)
... ......||+.|+|||+
T Consensus 160 ~~~~~~~~~~~~~~~gt~~Y~aPE~ 184 (483)
T 3sv0_A 160 STHQHIPYRENKNLTGTARYASVNT 184 (483)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHH
T ss_pred ccccccccccccccCCCccccCHHH
Confidence 321 1124579999999996
No 308
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.92 E-value=6.3e-26 Score=267.39 Aligned_cols=163 Identities=25% Similarity=0.373 Sum_probs=139.7
Q ss_pred hcCCCCCCeeeccCCceEEEEEec--CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCe-----
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL--DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDF----- 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----- 729 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 378999999999999999999986 58999999886443 3445678899999999999999999999987655
Q ss_pred eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 730 KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
.|+||||+++++|.+++.. .+++..+..++.|++.||+||| ++||+||||||+||+++.+ .+||+|||+++..
T Consensus 159 ~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~ 231 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRI 231 (681)
T ss_dssp EEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEET
T ss_pred eEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchhc
Confidence 6999999999999988754 5899999999999999999999 9999999999999999885 9999999999876
Q ss_pred CCCcccccccccccccccCCCCC
Q 003301 810 SGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 810 ~~~~~~~~~~~~gt~~y~APE~l 832 (832)
... ...+||+.|+|||++
T Consensus 232 ~~~-----~~~~gt~~y~aPE~~ 249 (681)
T 2pzi_A 232 NSF-----GYLYGTPGFQAPEIV 249 (681)
T ss_dssp TCC-----SCCCCCTTTSCTTHH
T ss_pred ccC-----CccCCCccccCHHHH
Confidence 443 235699999999963
No 309
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=99.92 E-value=1e-25 Score=246.03 Aligned_cols=163 Identities=28% Similarity=0.389 Sum_probs=138.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCee----
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK---- 730 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~---- 730 (832)
.++|.+.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+++++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 468999999999999999999876 48999999997543 33457788999999999999999999999877654
Q ss_pred --EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 731 --ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 731 --~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
|+||||++ ++|.+++.. .+++..+..++.|++.|++||| +.||+||||||+||+++.++.+||+|||.|+.
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 193 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH 193 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred eEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence 99999996 688888743 4899999999999999999999 99999999999999999999999999999986
Q ss_pred cCCCcccccccccccccccCCCC
Q 003301 809 LSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 809 ~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
.... ....+||+.|+|||+
T Consensus 194 ~~~~----~~~~~~t~~y~aPE~ 212 (371)
T 4exu_A 194 ADAE----MTGYVVTRWYRAPEV 212 (371)
T ss_dssp ----------CTTCCCTTSCHHH
T ss_pred cccC----cCCcccCccccCHHH
Confidence 5432 233568999999996
No 310
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.92 E-value=5.9e-26 Score=252.03 Aligned_cols=168 Identities=24% Similarity=0.446 Sum_probs=136.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEEEEec
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~ 736 (832)
..+|++.+.||+|+||+||.....+++.||||++..... ..+.+|+++++++ +||||+++++++.+.+..|+||||
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 356888999999999997665556899999999865432 2356799999999 799999999999999999999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-----CCcEEEeccccccccCC
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK-----DMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~-----~~~~kl~DFg~a~~~~~ 811 (832)
|+ |+|.+++........+..+..++.|++.||+||| +.||+||||||+||+++. ...+||+|||+|+....
T Consensus 100 ~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~ 175 (432)
T 3p23_A 100 CA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV 175 (432)
T ss_dssp CS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--
T ss_pred CC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccC
Confidence 95 6999999877656666677899999999999999 999999999999999953 23688999999987654
Q ss_pred Ccc--cccccccccccccCCCCC
Q 003301 812 EES--MKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 812 ~~~--~~~~~~~gt~~y~APE~l 832 (832)
... ......+||+.|+|||++
T Consensus 176 ~~~~~~~~~~~~gt~~y~APE~l 198 (432)
T 3p23_A 176 GRHSFSRRSGVPGTEGWIAPEML 198 (432)
T ss_dssp ----------CCSCTTSCCGGGT
T ss_pred CCcceeeccccCCCcCccChhhh
Confidence 321 122345799999999975
No 311
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.6e-26 Score=244.75 Aligned_cols=172 Identities=30% Similarity=0.400 Sum_probs=137.1
Q ss_pred HHHHHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch------hhHHHHHHHHHHHhcC----CCCceeeec
Q 003301 653 ELLQATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE------GALKSFDVECEVLKSV----RHRNLVKII 721 (832)
Q Consensus 653 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l----~h~niv~l~ 721 (832)
+.....++|++.+.||+|+||.||+|.+. +++.||||++..... .....+.+|+++++++ +||||++++
T Consensus 25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~ 104 (312)
T 2iwi_A 25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL 104 (312)
T ss_dssp --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence 34455789999999999999999999875 588999999865432 1223455788888888 899999999
Q ss_pred eEEecCCeeEEEEec-CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCcEE
Q 003301 722 SSCTNNDFKALVLEY-MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLD-KDMVAH 799 (832)
Q Consensus 722 ~~~~~~~~~~lv~e~-~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~-~~~~~k 799 (832)
+++...+..++|||| +++++|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++ .++.+|
T Consensus 105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~k 180 (312)
T 2iwi_A 105 DWFETQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAK 180 (312)
T ss_dssp EEC-----CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEE
T ss_pred EEEecCCeEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEE
Confidence 999999999999999 78999999998754 6899999999999999999999 99999999999999999 889999
Q ss_pred EeccccccccCCCcccccccccccccccCCCC
Q 003301 800 LSDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 800 l~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
|+|||.++...... .....||+.|+|||+
T Consensus 181 l~dfg~~~~~~~~~---~~~~~~~~~y~aPE~ 209 (312)
T 2iwi_A 181 LIDFGSGALLHDEP---YTDFDGTRVYSPPEW 209 (312)
T ss_dssp ECCCSSCEECCSSC---BCCCCSCTTTSCHHH
T ss_pred EEEcchhhhcccCc---ccccCCcccccCcee
Confidence 99999998765432 233569999999996
No 312
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=99.92 E-value=9.9e-26 Score=249.07 Aligned_cols=166 Identities=24% Similarity=0.348 Sum_probs=140.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCC--------CCceeeeceEEe---
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVR--------HRNLVKIISSCT--- 725 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~l~~~~~--- 725 (832)
.++|++.+.||+|+||+||+|++. +++.||||++... ....+.+.+|+++++.++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 478999999999999999999875 4889999998754 334567889999999885 788999999987
Q ss_pred -cCCeeEEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeEeCCCC------
Q 003301 726 -NNDFKALVLEYMPNGSLEDYLYSN-NFSFDILQRLSVIIDVALALEYLHFGYSN-PVVHCDIKPSNVLLDKDM------ 796 (832)
Q Consensus 726 -~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIl~~~~~------ 796 (832)
.....|+||||+ ++++.+++... ...+++..+..++.|++.||+||| ++ ||+||||||+||+++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~~~~~ 190 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQYIRRL 190 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchhhhhh
Confidence 556889999999 66776666544 346999999999999999999999 88 999999999999998775
Q ss_pred -------------------------------------------cEEEeccccccccCCCcccccccccccccccCCCCC
Q 003301 797 -------------------------------------------VAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 797 -------------------------------------------~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
.+||+|||.|+..... ....+||+.|+|||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----~~~~~gt~~y~aPE~~ 265 (397)
T 1wak_A 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----FTEDIQTRQYRSLEVL 265 (397)
T ss_dssp HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----SCSCCSCGGGCCHHHH
T ss_pred hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----CccCCCCCcccCChhh
Confidence 7999999999876432 2235699999999963
No 313
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.92 E-value=3.3e-25 Score=237.91 Aligned_cols=169 Identities=25% Similarity=0.323 Sum_probs=127.0
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHH-HHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECE-VLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ......+..|+. +++.++||||+++++++..++..|+||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 478999999999999999999985 58999999997653 233345556665 677889999999999999999999999
Q ss_pred ecCCCCCHHHHHhh----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 735 EYMPNGSLEDYLYS----NNFSFDILQRLSVIIDVALALEYLHFGYSN-PVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 735 e~~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
||++ ++|.+++.. ....+++..+..++.|++.|++||| +. ||+||||||+||+++.++.+||+|||+++..
T Consensus 101 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 101 ELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp CCCS-EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred eecC-CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 9996 588887763 2346899999999999999999999 88 9999999999999999999999999999876
Q ss_pred CCCcccccccccccccccCCCCC
Q 003301 810 SGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 810 ~~~~~~~~~~~~gt~~y~APE~l 832 (832)
..... .....||+.|+|||++
T Consensus 177 ~~~~~--~~~~~gt~~y~aPE~~ 197 (327)
T 3aln_A 177 VDSIA--KTRDAGCRPYMAPERI 197 (327)
T ss_dssp -----------------------
T ss_pred ccccc--cccCCCCccccCceee
Confidence 44322 2234699999999974
No 314
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=99.92 E-value=1.3e-25 Score=241.07 Aligned_cols=169 Identities=31% Similarity=0.456 Sum_probs=141.6
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec--CCcEEEEEEEeccch--hhHHHHHHHHHHHhcC---CCCceeeeceEEe----
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL--DGMEVAIKVFHLQLE--GALKSFDVECEVLKSV---RHRNLVKIISSCT---- 725 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l---~h~niv~l~~~~~---- 725 (832)
..++|++.+.||+|+||.||+|.+. +++.||+|++..... .....+.+|+++++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 4578999999999999999999984 588999999875432 2224566777777666 8999999999987
Q ss_pred -cCCeeEEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecc
Q 003301 726 -NNDFKALVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDF 803 (832)
Q Consensus 726 -~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DF 803 (832)
.....++||||++ |+|.+++.... ..+++..+..++.|++.||+||| +.||+||||||+||+++.++.+||+||
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~Df 164 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADF 164 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSC
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEecC
Confidence 4567899999996 69999998654 34899999999999999999999 999999999999999999999999999
Q ss_pred ccccccCCCcccccccccccccccCCCC
Q 003301 804 GIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 804 g~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
|.++...... ......||+.|+|||+
T Consensus 165 g~~~~~~~~~--~~~~~~~~~~y~aPE~ 190 (326)
T 1blx_A 165 GLARIYSFQM--ALTSVVVTLWYRAPEV 190 (326)
T ss_dssp CSCCCCCGGG--GGCCCCCCCTTCCHHH
T ss_pred cccccccCCC--CccccccccceeCHHH
Confidence 9998764322 2234569999999996
No 315
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.3e-24 Score=226.18 Aligned_cols=205 Identities=22% Similarity=0.208 Sum_probs=125.9
Q ss_pred cccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCC
Q 003301 290 WANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNL 369 (832)
Q Consensus 290 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 369 (832)
+.++++++++++++|.++ .+|..+. ..++.|++++|.+++..+..|..+++|++|+|++|.+++..+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--------
Confidence 456677777777777776 3333322 1444444444444444444444455555555555544432221
Q ss_pred ceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCC
Q 003301 370 QGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSN 449 (832)
Q Consensus 370 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 449 (832)
..+++|++|++++|+++ .+|..+..+++|++|++++|+++++.+..|.++++|++|+|++|
T Consensus 74 ------------------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 74 ------------------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp ------------------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred ------------------CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 34455555555555555 44555556666666666666666655666666666666666666
Q ss_pred cccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCccccc
Q 003301 450 FLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGN 526 (832)
Q Consensus 450 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 526 (832)
++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|++...
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 666655556666777777777777777655566677777888888888887 5777777777888888888887643
No 316
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=99.92 E-value=1.5e-26 Score=247.41 Aligned_cols=173 Identities=25% Similarity=0.438 Sum_probs=142.3
Q ss_pred HHHHHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCee
Q 003301 653 ELLQATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFK 730 (832)
Q Consensus 653 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 730 (832)
++....++|++.+.||+|+||.||+|.+.+ .||+|++.... ....+.+.+|++++++++||||+++++++.+.+..
T Consensus 27 ~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 104 (319)
T 2y4i_B 27 EWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHL 104 (319)
T ss_dssp GSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCE
T ss_pred cccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCce
Confidence 333446889999999999999999998743 59999986543 22335677899999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccC
Q 003301 731 ALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~ 810 (832)
++||||+++++|.+++...+..+++..+..++.|++.|++||| +.|++||||||+||+++ ++.+||+|||+|+...
T Consensus 105 ~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~ 180 (319)
T 2y4i_B 105 AIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISG 180 (319)
T ss_dssp EEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC---
T ss_pred EEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCccccc
Confidence 9999999999999999877667999999999999999999999 99999999999999998 6799999999987653
Q ss_pred CCc----ccccccccccccccCCCC
Q 003301 811 GEE----SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 811 ~~~----~~~~~~~~gt~~y~APE~ 831 (832)
... ........||+.|+|||+
T Consensus 181 ~~~~~~~~~~~~~~~g~~~y~aPE~ 205 (319)
T 2y4i_B 181 VLQAGRREDKLRIQNGWLCHLAPEI 205 (319)
T ss_dssp -------CCSCBCCSGGGGTSCHHH
T ss_pred cccccccccccccCCCcccccChHH
Confidence 211 112223459999999996
No 317
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=99.92 E-value=2.9e-25 Score=241.84 Aligned_cols=175 Identities=28% Similarity=0.348 Sum_probs=132.7
Q ss_pred HHHHHHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEecCC--
Q 003301 652 KELLQATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTNND-- 728 (832)
Q Consensus 652 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-- 728 (832)
.+.....++|++.+.||+|+||.||+|++. +++.||||++.... .......+|++.++.++||||+++++++...+
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 455667899999999999999999999985 48999999986543 22356677888888899999999999986533
Q ss_pred -----eeEEEEecCCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCcEE
Q 003301 729 -----FKALVLEYMPNGSLEDYLYS---NNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK-DMVAH 799 (832)
Q Consensus 729 -----~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~-~~~~k 799 (832)
..++||||+++ ++.+.+.. ....+++..+..++.|++.|++|+| .++.||+||||||+||+++. ++.+|
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH-~~~~~ivH~Dlkp~NIll~~~~~~~k 172 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLH-LPSVNVCHRDIKPHNVLVNEADGTLK 172 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHT-STTTCCBCSCCCGGGEEEETTTTEEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHh-CCCCCeecCcCCHHHEEEeCCCCcEE
Confidence 27899999965 65554432 3446899999999999999999999 33689999999999999996 89999
Q ss_pred EeccccccccCCCcccccccccccccccCCCC
Q 003301 800 LSDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 800 l~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
|+|||+|+....... .....||+.|+|||+
T Consensus 173 l~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~ 202 (360)
T 3e3p_A 173 LCDFGSAKKLSPSEP--NVAYICSRYYRAPEL 202 (360)
T ss_dssp ECCCTTCBCCCTTSC--CCSTTSCGGGCCHHH
T ss_pred EeeCCCceecCCCCC--cccccCCcceeCHHH
Confidence 999999987654432 223568999999996
No 318
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=99.92 E-value=2.7e-25 Score=239.90 Aligned_cols=165 Identities=22% Similarity=0.384 Sum_probs=142.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEec--CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCc------eeeeceEEecCCe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL--DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRN------LVKIISSCTNNDF 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~ 729 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++... ....+.+.+|+++++.++|++ ++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 468999999999999999999873 5889999998754 334567888999998887654 9999999999999
Q ss_pred eEEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC--------------
Q 003301 730 KALVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK-------------- 794 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~-------------- 794 (832)
.|+||||+ +++|.+++.... ..+++..+..++.|++.||+||| ++||+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCccccc
Confidence 99999999 899999998654 35889999999999999999999 999999999999999987
Q ss_pred -----CCcEEEeccccccccCCCcccccccccccccccCCCC
Q 003301 795 -----DMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 795 -----~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
++.+||+|||.|+...... ....||+.|+|||+
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~ 205 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEHH----STLVSTRHYRAPEV 205 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSCC----CSSCSCGGGCCHHH
T ss_pred cccccCCCceEeeCcccccCcccc----ccccCCccccChHH
Confidence 6689999999998754322 23569999999996
No 319
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.92 E-value=1.7e-25 Score=238.46 Aligned_cols=169 Identities=24% Similarity=0.377 Sum_probs=140.9
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCC--CCceeeeceEEecCCeeEE
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--EGALKSFDVECEVLKSVR--HRNLVKIISSCTNNDFKAL 732 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~l 732 (832)
..++|++.+.||+|+||.||+|.+.+++.||||++.... ....+.+.+|++++++++ ||||+++++++..++..|+
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 457899999999999999999999889999999997543 334578899999999997 5999999999999999999
Q ss_pred EEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCC
Q 003301 733 VLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 733 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
|||+ .+++|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||++++ +.+||+|||.++.....
T Consensus 106 v~e~-~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~ 179 (313)
T 3cek_A 106 VMEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPD 179 (313)
T ss_dssp EECC-CSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC----
T ss_pred EEec-CCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccccCc
Confidence 9995 5889999998764 6899999999999999999999 999999999999999964 89999999999876443
Q ss_pred ccc-ccccccccccccCCCC
Q 003301 813 ESM-KQTLTLATIGYMAPGL 831 (832)
Q Consensus 813 ~~~-~~~~~~gt~~y~APE~ 831 (832)
... ......||+.|+|||+
T Consensus 180 ~~~~~~~~~~gt~~y~aPE~ 199 (313)
T 3cek_A 180 TTSVVKDSQVGTVNYMPPEA 199 (313)
T ss_dssp ----------CCGGGCCHHH
T ss_pred cccccccCCCCCCCcCCHHH
Confidence 321 1223569999999996
No 320
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=99.92 E-value=1.8e-25 Score=242.58 Aligned_cols=163 Identities=28% Similarity=0.385 Sum_probs=138.1
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCe-----
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDF----- 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----- 729 (832)
.++|.+.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+.+++.++||||+++++++...+.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 468999999999999999999886 48999999987543 2335678899999999999999999999987654
Q ss_pred -eEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 730 -KALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 730 -~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
.|+||||++ ++|.+++.. .+++..+..++.|++.||+||| ++||+||||||+||+++.++.+||+|||.++.
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 175 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH 175 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred eEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccccC
Confidence 499999996 688887753 4899999999999999999999 99999999999999999999999999999986
Q ss_pred cCCCcccccccccccccccCCCC
Q 003301 809 LSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 809 ~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
.... .....||+.|+|||+
T Consensus 176 ~~~~----~~~~~~t~~y~aPE~ 194 (353)
T 3coi_A 176 ADAE----MTGYVVTRWYRAPEV 194 (353)
T ss_dssp ------------CCSBCCSCHHH
T ss_pred CCCC----ccccccCcCcCCHHH
Confidence 5332 223568999999995
No 321
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=3.9e-25 Score=235.08 Aligned_cols=203 Identities=21% Similarity=0.175 Sum_probs=169.5
Q ss_pred CcCcccEEEeecCcccccccccc--cCCCCCceEEccCCccCCCCc----hhhcCCCCCcEEEecCCcCCCCCcccCCCC
Q 003301 341 NLINLRELGLWGNELIGSIPITF--GKLQNLQGLDLVNNKLEGPIP----NGLCQLARLSVLYMDGNKLSGPIPPCIGDL 414 (832)
Q Consensus 341 ~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 414 (832)
.+++|++|++++|.+.+..|..+ ..+++|++|+|++|++++..+ ..+..+++|++|+|++|++++..|..|+.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34668999999999988888887 888999999999999987655 345678899999999999998888899999
Q ss_pred CCCCeEeCCCCcCCCC---C-CcccccCcccceeeecCCcccCCCcc----ccccccccceecccCcccCCccCCccccc
Q 003301 415 TSLRLLSLASNELNSV---I-PSTFWNLKDILSLNFSSNFLNGSLPE----DIGNLKVVVIIDLSRNNLSGDIPTAIGGL 486 (832)
Q Consensus 415 ~~L~~L~L~~N~l~~~---~-~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 486 (832)
++|++|+|++|++.+. . +..+..+++|++|+|++|+++. ++. .++.+++|++|||++|++++..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 9999999999998652 2 2334788999999999999973 333 35778999999999999998888888777
Q ss_pred ---cccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccc
Q 003301 487 ---MNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEG 549 (832)
Q Consensus 487 ---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 549 (832)
++|++|+|++|+|+ .+|..+. ++|+.|||++|+|++. |. +..+++|+.|+|++|+++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 6787775 7999999999999974 43 6778999999999999874
No 322
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=99.92 E-value=5.2e-25 Score=236.92 Aligned_cols=165 Identities=24% Similarity=0.362 Sum_probs=121.3
Q ss_pred hcCCCCC-CeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCceeeeceEEec----CCeeE
Q 003301 658 TNQFNAS-NLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNLVKIISSCTN----NDFKA 731 (832)
Q Consensus 658 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~ 731 (832)
.++|++. +.||+|+||.||+|.+. +++.||||++..... ........++.++||||+++++++.. +...|
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 102 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK----ARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLL 102 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH----HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH----HHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence 5788885 46999999999999987 589999999875421 11222334566799999999999876 44589
Q ss_pred EEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCcEEEecccccc
Q 003301 732 LVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK---DMVAHLSDFGIAK 807 (832)
Q Consensus 732 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~DFg~a~ 807 (832)
+||||+++|+|.+++.... ..+++..+..++.|++.||+||| ++||+||||||+||+++. ++.+||+|||+|+
T Consensus 103 lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~ 179 (336)
T 3fhr_A 103 IIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK 179 (336)
T ss_dssp EEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred EEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccce
Confidence 9999999999999998654 35999999999999999999999 999999999999999976 4569999999998
Q ss_pred ccCCCcccccccccccccccCCCCC
Q 003301 808 LLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 808 ~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
...... .....||+.|+|||++
T Consensus 180 ~~~~~~---~~~~~~t~~y~aPE~~ 201 (336)
T 3fhr_A 180 ETTQNA---LQTPCYTPYYVAPEVL 201 (336)
T ss_dssp EC-----------------------
T ss_pred eccccc---cccCCCCcCccChhhh
Confidence 764332 2235689999999974
No 323
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.92 E-value=1.1e-25 Score=240.72 Aligned_cols=169 Identities=28% Similarity=0.350 Sum_probs=145.3
Q ss_pred HHhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchh------hHHHHHHHHHHHhcCC--CCceeeeceEEec
Q 003301 656 QATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEG------ALKSFDVECEVLKSVR--HRNLVKIISSCTN 726 (832)
Q Consensus 656 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~--h~niv~l~~~~~~ 726 (832)
...++|++.+.||+|+||.||+|.+. +++.||||++...... ..+.+.+|++++++++ ||||+++++++..
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~ 119 (320)
T 3a99_A 40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER 119 (320)
T ss_dssp CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence 34578999999999999999999875 5899999999755321 2245677999999996 5999999999999
Q ss_pred CCeeEEEEecCCC-CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCcEEEeccc
Q 003301 727 NDFKALVLEYMPN-GSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLD-KDMVAHLSDFG 804 (832)
Q Consensus 727 ~~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~-~~~~~kl~DFg 804 (832)
.+..++||||+.+ ++|.+++.... .+++..+..++.|++.||+||| +.||+||||||+||+++ .++.+||+|||
T Consensus 120 ~~~~~lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg 195 (320)
T 3a99_A 120 PDSFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFG 195 (320)
T ss_dssp SSEEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred CCcEEEEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence 9999999999976 89999998654 6899999999999999999999 99999999999999999 78999999999
Q ss_pred cccccCCCcccccccccccccccCCCC
Q 003301 805 IAKLLSGEESMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 805 ~a~~~~~~~~~~~~~~~gt~~y~APE~ 831 (832)
+++...... .....||+.|+|||+
T Consensus 196 ~~~~~~~~~---~~~~~gt~~y~aPE~ 219 (320)
T 3a99_A 196 SGALLKDTV---YTDFDGTRVYSPPEW 219 (320)
T ss_dssp TCEECCSSC---BCCCCSCGGGSCHHH
T ss_pred ccccccccc---ccCCCCCccCCChHH
Confidence 998765432 223569999999996
No 324
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.92 E-value=2.6e-25 Score=247.76 Aligned_cols=166 Identities=28% Similarity=0.399 Sum_probs=129.7
Q ss_pred cCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcC-CCCceeeeceEEecCCeeEEEEecC
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSV-RHRNLVKIISSCTNNDFKALVLEYM 737 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~ 737 (832)
+.|.+.+.||+|+||+||.+...+|+.||||++.... .+.+.+|+++++++ +||||+++++++.+++..|+|||||
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~ 91 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC 91 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence 3455678899999999987766689999999987543 35678899999876 8999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCC------CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-------------CcE
Q 003301 738 PNGSLEDYLYSNNFS------FDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKD-------------MVA 798 (832)
Q Consensus 738 ~~g~L~~~l~~~~~~------~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~-------------~~~ 798 (832)
+ |+|.+++...... .++..+..++.|++.||+||| +.||+||||||+||+++.+ +.+
T Consensus 92 ~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~ 167 (434)
T 2rio_A 92 N-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRI 167 (434)
T ss_dssp S-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred C-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEE
Confidence 5 6999999865421 123345779999999999999 9999999999999999754 489
Q ss_pred EEeccccccccCCCccc---ccccccccccccCCCC
Q 003301 799 HLSDFGIAKLLSGEESM---KQTLTLATIGYMAPGL 831 (832)
Q Consensus 799 kl~DFg~a~~~~~~~~~---~~~~~~gt~~y~APE~ 831 (832)
||+|||+|+........ .....+||+.|+|||+
T Consensus 168 kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 203 (434)
T 2rio_A 168 LISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPEL 203 (434)
T ss_dssp EECCCTTCEECCC--------------CCTTSCHHH
T ss_pred EEcccccceecCCCCccceeeecCCCCCCCccCHHH
Confidence 99999999887544322 1223579999999996
No 325
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.91 E-value=2e-25 Score=255.00 Aligned_cols=170 Identities=31% Similarity=0.472 Sum_probs=143.3
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccc-hhhHHHHHHHHHHHhcCCCCceeeeceEEec------CCe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQL-EGALKSFDVECEVLKSVRHRNLVKIISSCTN------NDF 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~ 729 (832)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|++++++++||||+++++++.. .+.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 478999999999999999999875 48999999987542 3445778999999999999999999998765 667
Q ss_pred eEEEEecCCCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCc---EEEeccc
Q 003301 730 KALVLEYMPNGSLEDYLYSNNF--SFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMV---AHLSDFG 804 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~---~kl~DFg 804 (832)
.|+||||+++|+|.+++..... .+++..+..++.|++.|++||| +.||+||||||+||+++.++. +||+|||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEcccc
Confidence 8999999999999999986432 5888999999999999999999 999999999999999987664 9999999
Q ss_pred cccccCCCcccccccccccccccCCCCC
Q 003301 805 IAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 805 ~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
.|+....... .....||+.|+|||++
T Consensus 170 ~a~~~~~~~~--~~~~~gt~~Y~APE~l 195 (676)
T 3qa8_A 170 YAKELDQGEL--CTEFVGTLQYLAPELL 195 (676)
T ss_dssp CCCBTTSCCC--CCCCCSCCTTCSSCSS
T ss_pred cccccccccc--cccccCCcccCChHHh
Confidence 9987654432 2335799999999975
No 326
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.91 E-value=4.8e-25 Score=235.64 Aligned_cols=168 Identities=26% Similarity=0.305 Sum_probs=127.9
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch--hhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE--GALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
.++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+..+..+++.++||||+++++++.+++..|+||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 467999999999999999999986 589999999975532 22234445556788889999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSN-PVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
||+ ++.+..+.......+++..+..++.|++.|++||| ++ |++||||||+||+++.++.+||+|||.+.......
T Consensus 104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~ 179 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK 179 (318)
T ss_dssp CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCc
Confidence 999 66777666654557999999999999999999999 85 99999999999999999999999999997764432
Q ss_pred ccccccccccccccCCCC
Q 003301 814 SMKQTLTLATIGYMAPGL 831 (832)
Q Consensus 814 ~~~~~~~~gt~~y~APE~ 831 (832)
. .....||+.|+|||+
T Consensus 180 ~--~~~~~~~~~y~aPE~ 195 (318)
T 2dyl_A 180 A--KDRSAGCAAYMAPER 195 (318)
T ss_dssp ---------CCTTCCHHH
T ss_pred c--ccccCCCccccChhh
Confidence 2 223469999999996
No 327
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=5.9e-24 Score=218.54 Aligned_cols=180 Identities=26% Similarity=0.303 Sum_probs=92.4
Q ss_pred cccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCC
Q 003301 344 NLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLA 423 (832)
Q Consensus 344 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 423 (832)
..++++++++.++. +|..+. ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34555555555552 333222 345555555555554444445555555555555555554444445555555555555
Q ss_pred CCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccC
Q 003301 424 SNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSI 503 (832)
Q Consensus 424 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 503 (832)
+|++++..+..| ..+++|++|+|++|++++..+..|.++++|+.|+|++|+|++..
T Consensus 92 ~n~l~~~~~~~~------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVF------------------------DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTT------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHh------------------------cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 555554444444 44455555555555555444444455555555555555555444
Q ss_pred CccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCccccc
Q 003301 504 PKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGE 550 (832)
Q Consensus 504 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 550 (832)
+..|+.+++|+.|+|++|++++..|..+..+++|+.|+|++|+++|.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 44555555555555555555555444555555555555555555554
No 328
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=99.91 E-value=1.4e-24 Score=238.02 Aligned_cols=169 Identities=25% Similarity=0.349 Sum_probs=141.3
Q ss_pred HhcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCC-CC-----ceeeeceEEecCCe
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVR-HR-----NLVKIISSCTNNDF 729 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~l~~~~~~~~~ 729 (832)
..++|++.+.||+|+||+||+|.+. +++.||||+++... ...+.+.+|+++++.++ |+ +|+++++++...+.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 3578999999999999999999876 48899999997543 33466778888888774 44 59999999999999
Q ss_pred eEEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC--CCCcEEEeccccc
Q 003301 730 KALVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLD--KDMVAHLSDFGIA 806 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~--~~~~~kl~DFg~a 806 (832)
.|+||||++ ++|.+++.... ..+++..+..++.|++.|++|||. +..||+||||||+||+++ .++.+||+|||+|
T Consensus 131 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~-~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a 208 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT-PELSIIHCDLKPENILLCNPKRSAIKIVDFGSS 208 (382)
T ss_dssp EEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS-TTTCEECCCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred eEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc-CCCCEEcCCCCcccEEEecCCCCcEEEEeccCc
Confidence 999999995 69999998754 358999999999999999999992 246899999999999994 5788999999999
Q ss_pred cccCCCcccccccccccccccCCCCC
Q 003301 807 KLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 807 ~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
+..... ....+||+.|+|||++
T Consensus 209 ~~~~~~----~~~~~~t~~y~aPE~~ 230 (382)
T 2vx3_A 209 CQLGQR----IYQYIQSRFYRSPEVL 230 (382)
T ss_dssp EETTCC----CCSSCSCGGGCCHHHH
T ss_pred eecccc----cccccCCccccChHHH
Confidence 876432 2235799999999963
No 329
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=5.3e-26 Score=247.34 Aligned_cols=228 Identities=18% Similarity=0.165 Sum_probs=95.8
Q ss_pred EccCCccccccCCcccCCCCccEEEcCCCcCcccCC----ccccCcc-ccceeecccccCCCCCCccccccccccC-CCC
Q 003301 223 SLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIP----NTLGNLR-KLEWLRLSYNFLTSSTSELSFLSSWANC-KNL 296 (832)
Q Consensus 223 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~~l-~~L 296 (832)
++++|.+++.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.++...... +...+... ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCCc
Confidence 344444444444443334444444444444444333 3344444 4444444444444321110 01111111 444
Q ss_pred cEEeccCCCCCCCCCCccccc----ccccceEEeecCcccccccccc----cC-cCcccEEEeecCcccccc----cccc
Q 003301 297 KLLDLSNNPINGVLPSSIGNL----SLSLSRIFISNCSIRGTIPKEI----GN-LINLRELGLWGNELIGSI----PITF 363 (832)
Q Consensus 297 ~~L~L~~N~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~L~~N~l~~~~----~~~~ 363 (832)
++|+|++|++++..+..+... ..+|++|++++|++++..+..+ .. .++|++|+|++|++++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 555555554443333322221 0134444444444433333222 22 135555555555555322 2223
Q ss_pred cCCC-CCceEEccCCccCCCCchhhc----CC-CCCcEEEecCCcCCCC----CcccCCC-CCCCCeEeCCCCcCCCCCC
Q 003301 364 GKLQ-NLQGLDLVNNKLEGPIPNGLC----QL-ARLSVLYMDGNKLSGP----IPPCIGD-LTSLRLLSLASNELNSVIP 432 (832)
Q Consensus 364 ~~l~-~L~~L~Ls~N~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~~ 432 (832)
..++ +|++|+|++|++++..+..++ .. ++|++|+|++|.+++. ++..+.. .++|+.|+|++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 555556665555544443332 22 3555555555555532 2223333 2355555555555554433
Q ss_pred ----cccccCcccceeeecCCcc
Q 003301 433 ----STFWNLKDILSLNFSSNFL 451 (832)
Q Consensus 433 ----~~~~~l~~L~~L~Ls~N~l 451 (832)
..+..+++|++|+|++|.+
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHHHhcCCCccEEEeccCCc
Confidence 2223344455555555543
No 330
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=99.91 E-value=1.1e-24 Score=236.85 Aligned_cols=166 Identities=23% Similarity=0.379 Sum_probs=140.8
Q ss_pred hcCCCCCCeeeccCCceEEEEEecC-C-cEEEEEEEeccchhhHHHHHHHHHHHhcCCCCc------eeeeceEEecCCe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFLD-G-MEVAIKVFHLQLEGALKSFDVECEVLKSVRHRN------LVKIISSCTNNDF 729 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~~-~-~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~ 729 (832)
.++|++.+.||+|+||+||+|.+.. + +.||+|+++.. ....+.+.+|++++++++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 4789999999999999999998753 4 68999998754 234467888999999987665 8999999999999
Q ss_pred eEEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe----------------
Q 003301 730 KALVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLL---------------- 792 (832)
Q Consensus 730 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---------------- 792 (832)
.|+||||+ ++++.+++.... ..+++..+..++.|++.||+||| ++||+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeccccccccccccccc
Confidence 99999999 677777776543 46899999999999999999999 9999999999999999
Q ss_pred ---CCCCcEEEeccccccccCCCcccccccccccccccCCCCC
Q 003301 793 ---DKDMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 793 ---~~~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
+.++.+||+|||.|+...... ....||+.|+|||++
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~ 211 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEHH----TTIVATRHYRPPEVI 211 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSCC----CSSCSCGGGCCHHHH
T ss_pred ccccCCCcEEEeecCccccccccc----cCCcCCCcccCCeee
Confidence 567899999999998653322 235699999999963
No 331
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=3e-24 Score=219.15 Aligned_cols=196 Identities=18% Similarity=0.223 Sum_probs=103.4
Q ss_pred cccEEEeecCcccccccccccCCCCCceEEccCCc-cCCCCchhhcCCCCCcEEEecC-CcCCCCCcccCCCCCCCCeEe
Q 003301 344 NLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNK-LEGPIPNGLCQLARLSVLYMDG-NKLSGPIPPCIGDLTSLRLLS 421 (832)
Q Consensus 344 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ 421 (832)
+|++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444444444444445555555443 4433333444444555555554 444444444445555555555
Q ss_pred CCCCcCCCCCCcccccCcccc---eeeecCC-cccCCCccccccccccc-eecccCcccCCccCCccccccccceeeccc
Q 003301 422 LASNELNSVIPSTFWNLKDIL---SLNFSSN-FLNGSLPEDIGNLKVVV-IIDLSRNNLSGDIPTAIGGLMNLQDLSLRD 496 (832)
Q Consensus 422 L~~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 496 (832)
+++|++++ +|. |..+++|+ +|++++| ++++..+..|..+++|+ .|++++|+++...+..|.. ++|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 55555544 222 44444444 5555555 55554445556666666 6666666665333333333 5666666666
Q ss_pred cc-ccccCCccccCC-CCCCeeccCCCcccccCchhhhhhccCCeeeCCCC
Q 003301 497 NG-LQGSIPKSIGGL-VSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFN 545 (832)
Q Consensus 497 N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N 545 (832)
|+ +++..+..|..+ ++|+.|||++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 63 665555666666 6667777777666643333 4556666666654
No 332
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.91 E-value=3.5e-25 Score=251.92 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=123.2
Q ss_pred CCCCeeeccCCceEEEEEecCCcEEEEEEEeccc--------hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEE
Q 003301 662 NASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL--------EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 662 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 733 (832)
...+.||+|+||+||+|+. .++.+|+|+..... ....+++.+|++++++++||||+++..++...+..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4567999999999999955 67889999865432 11235688999999999999999777777677788999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccccCCCc
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEE 813 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~ 813 (832)
|||+++++|.++++. +..++.|++.|++||| ++||+||||||+||+++. .+||+|||+|+......
T Consensus 418 mE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~ 483 (540)
T 3en9_A 418 MSYINGKLAKDVIED---------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDE 483 (540)
T ss_dssp EECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHH
T ss_pred EECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCCcc
Confidence 999999999999875 4589999999999999 999999999999999998 99999999999875543
Q ss_pred ccc------cccccccccccCCCCC
Q 003301 814 SMK------QTLTLATIGYMAPGLF 832 (832)
Q Consensus 814 ~~~------~~~~~gt~~y~APE~l 832 (832)
... ....+||+.|||||++
T Consensus 484 ~~~~~~~~~~~~~~GT~~y~APEv~ 508 (540)
T 3en9_A 484 DKAVDLIVFKKAVLSTHHEKFDEIW 508 (540)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccccchhhhhhhhcCCCCcCCHHHH
Confidence 221 1245799999999974
No 333
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=5.5e-26 Score=247.26 Aligned_cols=258 Identities=19% Similarity=0.176 Sum_probs=149.0
Q ss_pred eeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCC----CcccccccccceEEeecCcccccccccccCc--
Q 003301 269 WLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLP----SSIGNLSLSLSRIFISNCSIRGTIPKEIGNL-- 342 (832)
Q Consensus 269 ~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-- 342 (832)
++.+++|.+++ .++..+...++|++|+|++|.+++..+ ..+..++.+|++|++++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 2 NYKLTLHPGSN-----PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EEECCCCTTCC-----HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred ccccccccchH-----HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 35677777776 233334445558888888888776554 3444443357777777777776666655554
Q ss_pred ---CcccEEEeecCccccccccccc----CC-CCCceEEccCCccCCCCchhhcC-----CCCCcEEEecCCcCCCCCcc
Q 003301 343 ---INLRELGLWGNELIGSIPITFG----KL-QNLQGLDLVNNKLEGPIPNGLCQ-----LARLSVLYMDGNKLSGPIPP 409 (832)
Q Consensus 343 ---~~L~~L~L~~N~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~p~ 409 (832)
++|++|+|++|++++..+..+. .+ ++|++|+|++|++++..+..++. .++|++|+|++|++++..+.
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 6677777777776655554333 33 66777777777776555544332 24677777777776643332
Q ss_pred ----cCCCCC-CCCeEeCCCCcCCCCCCccccc----C-cccceeeecCCcccCC----Ccccccc-ccccceecccCcc
Q 003301 410 ----CIGDLT-SLRLLSLASNELNSVIPSTFWN----L-KDILSLNFSSNFLNGS----LPEDIGN-LKVVVIIDLSRNN 474 (832)
Q Consensus 410 ----~~~~l~-~L~~L~L~~N~l~~~~~~~~~~----l-~~L~~L~Ls~N~l~~~----~~~~~~~-l~~L~~L~Ls~N~ 474 (832)
.+..++ +|++|+|++|++++..+..+.. . ++|++|+|++|.+++. ++..+.. .++|+.|||++|+
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 233443 6777777777766655544332 2 4666666666666642 2333333 2366666666666
Q ss_pred cCCccC----Cccccccccceeeccccccccc-------CCccccCCCCCCeeccCCCcccccCchhh
Q 003301 475 LSGDIP----TAIGGLMNLQDLSLRDNGLQGS-------IPKSIGGLVSLESLDLSNNSLSGNIPTSM 531 (832)
Q Consensus 475 l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 531 (832)
+++..+ ..+..+++|+.|+|++|.+.+. ++..+..+++|+.||+++|++.+..+..+
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 665433 2334556666666666664322 22345556666666666666665544443
No 334
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.4e-23 Score=215.80 Aligned_cols=180 Identities=26% Similarity=0.277 Sum_probs=140.5
Q ss_pred ccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEec
Q 003301 320 SLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMD 399 (832)
Q Consensus 320 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 399 (832)
..++++++++.++ .+|..+. ++++.|+|++|++.+..+..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 6789999999998 4565554 689999999999999999999999999999999999998888889999999999999
Q ss_pred CCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCcc
Q 003301 400 GNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDI 479 (832)
Q Consensus 400 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 479 (832)
+|++++..+..|..+++|++|+|++|+++++.+..|..+++|++|+|++|++++..+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------- 149 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG---------------------- 149 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH----------------------
Confidence 9999988888999999999999999999887666666666666666666666544443
Q ss_pred CCccccccccceeecccccccccCCccccCCCCCCeeccCCCccccc
Q 003301 480 PTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGN 526 (832)
Q Consensus 480 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 526 (832)
.|+++++|+.|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus 150 --~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 150 --AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred --HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 444455555555555555544445555566666666666666554
No 335
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=99.91 E-value=8.8e-25 Score=239.25 Aligned_cols=166 Identities=20% Similarity=0.354 Sum_probs=140.4
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCC-----------CCceeeeceEEe
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVR-----------HRNLVKIISSCT 725 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~l~~~~~ 725 (832)
.++|++.+.||+|+||+||+|++. +++.||||++.... ...+.+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 468999999999999999999875 58999999987543 33467788999988876 899999999987
Q ss_pred cCC----eeEEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeEeC------
Q 003301 726 NND----FKALVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSN-PVVHCDIKPSNVLLD------ 793 (832)
Q Consensus 726 ~~~----~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIl~~------ 793 (832)
..+ ..++||||+ +++|.+++.... ..+++..+..++.|++.||+||| ++ ||+||||||+||+++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEETTT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEeccCCCc
Confidence 654 789999999 899999998643 35899999999999999999999 87 999999999999994
Q ss_pred CCCcEEEeccccccccCCCcccccccccccccccCCCCC
Q 003301 794 KDMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 794 ~~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
..+.+||+|||+|+..... .....||+.|+|||++
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~ 207 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVL 207 (373)
T ss_dssp TEEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHH
T ss_pred CcceEEEcccccccccCCC----CCCCCCCccccCcHHH
Confidence 4458999999999876432 2234699999999963
No 336
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=6.9e-24 Score=216.39 Aligned_cols=197 Identities=19% Similarity=0.213 Sum_probs=164.6
Q ss_pred ccceEEeecCcccccccccccCcCcccEEEeecCc-ccccccccccCCCCCceEEccC-CccCCCCchhhcCCCCCcEEE
Q 003301 320 SLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNE-LIGSIPITFGKLQNLQGLDLVN-NKLEGPIPNGLCQLARLSVLY 397 (832)
Q Consensus 320 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ 397 (832)
++++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777888888877777788888999999999997 8877777888999999999998 888876677888899999999
Q ss_pred ecCCcCCCCCcccCCCCCCCC---eEeCCCC-cCCCCCCcccccCcccc-eeeecCCcccCCCccccccccccceecccC
Q 003301 398 MDGNKLSGPIPPCIGDLTSLR---LLSLASN-ELNSVIPSTFWNLKDIL-SLNFSSNFLNGSLPEDIGNLKVVVIIDLSR 472 (832)
Q Consensus 398 L~~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 472 (832)
+++|++++ +|. |..+++|+ .|++++| .++++.+..|.++++|+ +|++++|+++...+..+.. ++|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 99999986 565 88888888 9999999 89888888899999999 9999999998544444555 8999999999
Q ss_pred cc-cCCccCCccccc-cccceeecccccccccCCccccCCCCCCeeccCCCc
Q 003301 473 NN-LSGDIPTAIGGL-MNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNS 522 (832)
Q Consensus 473 N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 522 (832)
|+ +++..+..|.++ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 95 987778889999 999999999999985 4544 67789999998763
No 337
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=3.7e-24 Score=227.56 Aligned_cols=201 Identities=18% Similarity=0.204 Sum_probs=148.3
Q ss_pred ccceEEeecCcccccccccc--cCcCcccEEEeecCccccccc----ccccCCCCCceEEccCCccCCCCchhhcCCCCC
Q 003301 320 SLSRIFISNCSIRGTIPKEI--GNLINLRELGLWGNELIGSIP----ITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARL 393 (832)
Q Consensus 320 ~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 393 (832)
+|++|++++|.+++..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|++++..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 45666666666666666665 667777777777777765433 334567778888888888877777777778888
Q ss_pred cEEEecCCcCCCC--C--cccCCCCCCCCeEeCCCCcCCCCCCc---ccccCcccceeeecCCcccCCCccccccc---c
Q 003301 394 SVLYMDGNKLSGP--I--PPCIGDLTSLRLLSLASNELNSVIPS---TFWNLKDILSLNFSSNFLNGSLPEDIGNL---K 463 (832)
Q Consensus 394 ~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~ 463 (832)
++|+|++|++.+. + +..+..+++|++|+|++|+++...+. .+..+++|++|+|++|++++..|..+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 8888888876542 1 23346788888888888888643222 35677888888888888888777777776 6
Q ss_pred ccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccc
Q 003301 464 VVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSG 525 (832)
Q Consensus 464 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 525 (832)
+|++|+|++|+++ .+|..+. ++|+.|+|++|+|++. |. +..+++|+.|+|++|+++.
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8999999999998 6677664 7899999999999864 43 6788999999999999874
No 338
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.9e-26 Score=252.04 Aligned_cols=250 Identities=18% Similarity=0.184 Sum_probs=113.5
Q ss_pred CccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCC---CCCCCcccccccccceEEeecCccccc
Q 003301 258 PNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPIN---GVLPSSIGNLSLSLSRIFISNCSIRGT 334 (832)
Q Consensus 258 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~~~~~L~~L~l~~n~l~~~ 334 (832)
+..+..+++|++|+|++|.++..... .+...+..+++|++|+|++|.+. +.+|..+..
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~------------------ 85 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAAR-WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL------------------ 85 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHH-HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH------------------
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHH-HHHHHHHhCCCccEEeCcccccCccccchhHHHHH------------------
Confidence 34445555566666666655542111 12223445555555555554332 111211110
Q ss_pred ccccccCcCcccEEEeecCcccc----cccccccCCCCCceEEccCCccCCCCchhhcC----C---------CCCcEEE
Q 003301 335 IPKEIGNLINLRELGLWGNELIG----SIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQ----L---------ARLSVLY 397 (832)
Q Consensus 335 ~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----l---------~~L~~L~ 397 (832)
+...+..+++|++|+|++|.+.+ .++..+..+++|++|+|++|.+++..+..++. + ++|++|+
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 11223555666666666666654 34555556666666666666665333322222 2 5555555
Q ss_pred ecCCcCC-CCCc---ccCCCCCCCCeEeCCCCcCCC-----CCCcccccCcccceeeecCCccc----CCCccccccccc
Q 003301 398 MDGNKLS-GPIP---PCIGDLTSLRLLSLASNELNS-----VIPSTFWNLKDILSLNFSSNFLN----GSLPEDIGNLKV 464 (832)
Q Consensus 398 L~~N~l~-~~~p---~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~ 464 (832)
+++|+++ +.++ ..+..+++|+.|++++|+++. ..+..+..+++|++|+|++|.++ +.+|..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 5555554 2222 234445555555555555541 22224444444445555544443 233444444444
Q ss_pred cceecccCcccCCc----cCCcc--ccccccceeecccccccc----cCCccc-cCCCCCCeeccCCCccccc
Q 003301 465 VVIIDLSRNNLSGD----IPTAI--GGLMNLQDLSLRDNGLQG----SIPKSI-GGLVSLESLDLSNNSLSGN 526 (832)
Q Consensus 465 L~~L~Ls~N~l~~~----~~~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~ 526 (832)
|+.|+|++|++++. +|..+ +.+++|+.|+|++|.+++ .+|..+ ..+++|++|+|++|++++.
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 44444444444432 22333 124444444444444443 233333 3344444444444444433
No 339
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=6.6e-26 Score=249.21 Aligned_cols=246 Identities=22% Similarity=0.261 Sum_probs=194.4
Q ss_pred cccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecC---ccccccccc
Q 003301 286 FLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGN---ELIGSIPIT 362 (832)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~~~~~~ 362 (832)
++..+..+++|++|+|++|.+.+..+. .++..+..+++|++|+|++| ++.+.+|..
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~---------------------~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~ 82 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAAR---------------------WLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 82 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHH---------------------HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHH---------------------HHHHHHHhCCCccEEeCcccccCccccchhHH
Confidence 334456667777777777766532111 13344667888888888885 344444544
Q ss_pred c-------cCCCCCceEEccCCccCC----CCchhhcCCCCCcEEEecCCcCCCCCcccCC----CC---------CCCC
Q 003301 363 F-------GKLQNLQGLDLVNNKLEG----PIPNGLCQLARLSVLYMDGNKLSGPIPPCIG----DL---------TSLR 418 (832)
Q Consensus 363 ~-------~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l---------~~L~ 418 (832)
+ ..+++|++|+|++|++++ .+|..+..+++|++|+|++|.+++..+..+. .+ ++|+
T Consensus 83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 4 789999999999999997 4777889999999999999999754444333 33 8999
Q ss_pred eEeCCCCcCC-CCCC---cccccCcccceeeecCCcccC-----CCccccccccccceecccCcccC----CccCCcccc
Q 003301 419 LLSLASNELN-SVIP---STFWNLKDILSLNFSSNFLNG-----SLPEDIGNLKVVVIIDLSRNNLS----GDIPTAIGG 485 (832)
Q Consensus 419 ~L~L~~N~l~-~~~~---~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~ 485 (832)
+|++++|+++ ...+ ..|..+++|++|++++|+++. ..|..+..+++|+.|+|++|.++ +.+|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 9999999997 3344 467788999999999999983 34558889999999999999996 578889999
Q ss_pred ccccceeeccccccccc----CCccc--cCCCCCCeeccCCCcccc----cCchhh-hhhccCCeeeCCCCcccccCC
Q 003301 486 LMNLQDLSLRDNGLQGS----IPKSI--GGLVSLESLDLSNNSLSG----NIPTSM-EKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 486 l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~l~l~~N~l~~~~p 552 (832)
+++|+.|+|++|++++. +|..+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999999999999876 56666 449999999999999998 588887 668999999999999986554
No 340
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.3e-23 Score=220.86 Aligned_cols=193 Identities=25% Similarity=0.401 Sum_probs=104.4
Q ss_pred CcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeE
Q 003301 341 NLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLL 420 (832)
Q Consensus 341 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 420 (832)
.+++|++|++++|.+.. ++ .+..+++|++|+|++|++++..+ +..+++|++|++++|++++. + .+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 34445555555555443 22 34455555555555555553222 55555555555555555532 2 35555555555
Q ss_pred eCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeeccccccc
Q 003301 421 SLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQ 500 (832)
Q Consensus 421 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 500 (832)
++++|++++..+ +..+++|++|++++|++++..+ ++.+++|+.|+|++|++++..+ +.++++|+.|+|++|+++
T Consensus 113 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 555555554322 5555555555555555554322 5555666666666666654322 556666666666666665
Q ss_pred ccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccc
Q 003301 501 GSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEG 549 (832)
Q Consensus 501 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 549 (832)
+..+ +..+++|+.|+|++|++++..| +..+++|+.|++++|++++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 4332 5566666666666666664432 5566666666666666654
No 341
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=9.7e-25 Score=235.21 Aligned_cols=250 Identities=20% Similarity=0.219 Sum_probs=182.6
Q ss_pred CcEEeccCCCCCCCCCCccccc-ccccceEEeecCcccccccccccCcCcccEEEeecCccccc-ccccccCCCCCceEE
Q 003301 296 LKLLDLSNNPINGVLPSSIGNL-SLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGS-IPITFGKLQNLQGLD 373 (832)
Q Consensus 296 L~~L~L~~N~l~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~ 373 (832)
++.+++++|.+. +..+..+ ...++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666665554 2223332 12566666666666655444 44577788888888877655 666777788888888
Q ss_pred ccCCccCCCCchhhcCCCCCcEEEecCC-cCCCC-CcccCCCCCCCCeEeCCCC-cCCCC-CCcccccCc-ccceeeecC
Q 003301 374 LVNNKLEGPIPNGLCQLARLSVLYMDGN-KLSGP-IPPCIGDLTSLRLLSLASN-ELNSV-IPSTFWNLK-DILSLNFSS 448 (832)
Q Consensus 374 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~Ls~ 448 (832)
|++|++++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888877777777778888888888888 56642 5556777888888888888 77654 466677788 888888888
Q ss_pred C--ccc-CCCccccccccccceecccCcc-cCCccCCccccccccceeeccccc-ccccCCccccCCCCCCeeccCCCcc
Q 003301 449 N--FLN-GSLPEDIGNLKVVVIIDLSRNN-LSGDIPTAIGGLMNLQDLSLRDNG-LQGSIPKSIGGLVSLESLDLSNNSL 523 (832)
Q Consensus 449 N--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l 523 (832)
| .++ +.+|..+..+++|+.|++++|. +++..+..+.++++|+.|++++|. +.......++.+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 8 444 3466777889999999999999 777788889999999999999995 33222236888999999999999 3
Q ss_pred cccCchhhhhhc-cCCeeeCCCCcccccCCC
Q 003301 524 SGNIPTSMEKLL-YLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 524 ~~~~p~~~~~l~-~L~~l~l~~N~l~~~~p~ 553 (832)
+ ...+..+. .++.|++++|++++..|.
T Consensus 284 ~---~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 284 P---DGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp C---TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred C---HHHHHHHHhhCcceEEecccCccccCC
Confidence 3 33455553 488889999999998886
No 342
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.89 E-value=2.4e-23 Score=218.18 Aligned_cols=144 Identities=14% Similarity=0.077 Sum_probs=129.1
Q ss_pred cCCCCCCeeeccCCceEEEEEecC-CcEEEEEEEeccc---hhhHHHHHHHHHHHhcCCCCceeeeceEEecCCeeEEEE
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQL---EGALKSFDVECEVLKSVRHRNLVKIISSCTNNDFKALVL 734 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 734 (832)
++|++.+.||+|+||.||+|.+.. ++.||||++.... ....+.+.+|+.++++++||||+++++++.+++..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 679999999999999999999865 8999999987553 233477889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
||++|++|.++++.. ....++.+++.|++.||+||| ++||+||||||+||+++.++.+||+++|....
T Consensus 111 e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~~~~~ 178 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPATMPD 178 (286)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCCCCTT
T ss_pred EecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEeccccCC
Confidence 999999999999643 356678899999999999999 99999999999999999999999998877543
No 343
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=6e-23 Score=217.58 Aligned_cols=213 Identities=19% Similarity=0.329 Sum_probs=124.0
Q ss_pred cccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCc
Q 003301 265 RKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLIN 344 (832)
Q Consensus 265 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 344 (832)
.++..+.+..+.++.. ..+..+++|++|++++|.+.. ++ .+..+++
T Consensus 19 ~~~~~~~l~~~~~~~~-------~~~~~l~~L~~L~l~~~~i~~-l~--------------------------~~~~l~~ 64 (308)
T 1h6u_A 19 ANAIKIAAGKSNVTDT-------VTQADLDGITTLSAFGTGVTT-IE--------------------------GVQYLNN 64 (308)
T ss_dssp HHHHHHHTTCSSTTSE-------ECHHHHHTCCEEECTTSCCCC-CT--------------------------TGGGCTT
T ss_pred HHHHHHHhCCCCcCce-------ecHHHcCCcCEEEeeCCCccC-ch--------------------------hhhccCC
Confidence 3444455555555441 123556777777777777653 22 2344555
Q ss_pred ccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCC
Q 003301 345 LRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLAS 424 (832)
Q Consensus 345 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 424 (832)
|++|++++|++.+..+ +..+++|++|+|++|++++ ++ .+..+++|++|++++|++++. +. +..+++|+.|++++
T Consensus 65 L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 65 LIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDL 138 (308)
T ss_dssp CCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred CCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCC
Confidence 5555555555554333 5555566666666666553 22 455556666666666666542 22 56666666666666
Q ss_pred CcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCC
Q 003301 425 NELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIP 504 (832)
Q Consensus 425 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 504 (832)
|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..
T Consensus 139 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~- 211 (308)
T 1h6u_A 139 NQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS- 211 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-
T ss_pred CccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc-
Confidence 66655433 5566666666666666664322 6666666666666666664333 666667777777777776443
Q ss_pred ccccCCCCCCeeccCCCcccc
Q 003301 505 KSIGGLVSLESLDLSNNSLSG 525 (832)
Q Consensus 505 ~~~~~l~~L~~L~Ls~N~l~~ 525 (832)
.+..+++|+.|+|++|++++
T Consensus 212 -~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 -PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GGTTCTTCCEEEEEEEEEEC
T ss_pred -cccCCCCCCEEEccCCeeec
Confidence 26666777777777777764
No 344
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=5.1e-23 Score=222.56 Aligned_cols=202 Identities=16% Similarity=0.121 Sum_probs=85.6
Q ss_pred EEEccCCcCCCCCCCcccCcccccccccccccccccCCChhhhhcCCCceEEEccCCcccccCC-CCccCCCCccE-EEC
Q 003301 49 LVSLTNNFLSGTIPSTIFNLSSLSTGMDFSNNSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIP-NNIWQCKELIV-ISL 126 (832)
Q Consensus 49 ~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p-~~l~~l~~L~~-L~L 126 (832)
+++.++++++ .+|..+. +++ ++|+|++|+|+ .+|.+.|.++++|++|+|++|++.+.+| ..|.+++++++ +.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l-~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNA-IELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTC-SEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCC-CEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3444444444 4444331 222 44444444444 3444433344444444444444433222 23344444332 333
Q ss_pred cCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceecccc-cccccccCcccccCCcccEEEecCCCCCC
Q 003301 127 AYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQL-NKLVGFVPTSIFNLSAMKTLALPSNALSG 205 (832)
Q Consensus 127 s~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 205 (832)
++|+++...|+.|..+++|++|++++|+++...+..+....++..|++.+ +++..+.+.+|..+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-------------- 153 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------- 153 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence 34444444444444444444444444444433333333333444444432 333333333333332
Q ss_pred CCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcC-CCcCcccCCccccCccccceeecccccCCCCC
Q 003301 206 SLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELG-ENSFSGFIPNTLGNLRKLEWLRLSYNFLTSST 281 (832)
Q Consensus 206 ~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 281 (832)
..++.|+|++|+|+.+.+..| ...+|++|+++ +|.++.+.+++|.++++|++|+|++|+|+.++
T Consensus 154 -----------~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 154 -----------FESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp -----------SSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred -----------hhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 234444555555544333333 23345555554 24444444444555555555555555555443
No 345
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.1e-22 Score=219.95 Aligned_cols=243 Identities=16% Similarity=0.165 Sum_probs=167.8
Q ss_pred cEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccc-cccccCCCCCce-EEc
Q 003301 297 KLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSI-PITFGKLQNLQG-LDL 374 (832)
Q Consensus 297 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~-L~L 374 (832)
++++.++++++ .+|..+. .++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ +.+|.+++++++ +++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45566666665 4454442 26777777777777655667888888888888888876544 456777777664 566
Q ss_pred cCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCC-CcCCCCCCcccccCc-ccceeeecCCccc
Q 003301 375 VNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLAS-NELNSVIPSTFWNLK-DILSLNFSSNFLN 452 (832)
Q Consensus 375 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 452 (832)
+.|+++...|..|..+++|++|++++|++++..+..+....++..|++.+ |.+..+.+..|..+. .++.|+|++|+|+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67788876677788888888888888888866666676777777787754 567777777777765 5777888888888
Q ss_pred CCCccccccccccceecccC-cccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhh
Q 003301 453 GSLPEDIGNLKVVVIIDLSR-NNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSM 531 (832)
Q Consensus 453 ~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 531 (832)
. +|.......+|+.|++++ |.++...+.+|.++++|+.|+|++|+|+...+..|.++++|+.+++. .+. .+| .+
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~--~l~-~lP-~l 242 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLK-KLP-TL 242 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT--TCC-CCC-CT
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCC--CcC-cCC-Cc
Confidence 5 444444556788888874 66665555678888888888888888885555556665555555442 343 455 36
Q ss_pred hhhccCCeeeCCCCccc
Q 003301 532 EKLLYLKDLNLSFNKLE 548 (832)
Q Consensus 532 ~~l~~L~~l~l~~N~l~ 548 (832)
..+++|+.++++++.-+
T Consensus 243 ~~l~~L~~l~l~~~~~c 259 (350)
T 4ay9_X 243 EKLVALMEASLTYPSHC 259 (350)
T ss_dssp TTCCSCCEEECSCHHHH
T ss_pred hhCcChhhCcCCCCccc
Confidence 77888888888765433
No 346
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.89 E-value=1e-22 Score=215.43 Aligned_cols=148 Identities=24% Similarity=0.392 Sum_probs=129.2
Q ss_pred hcCCCCC-CeeeccCCceEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHH-hcCCCCceeeeceEEec----CCee
Q 003301 658 TNQFNAS-NLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVL-KSVRHRNLVKIISSCTN----NDFK 730 (832)
Q Consensus 658 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~l~~~~~~----~~~~ 730 (832)
.++|.+. +.||+|+||.||+|.+. +++.||+|++... ..+.+|++++ +..+||||+++++++.. +...
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 4667776 78999999999999885 5899999998643 4567788887 56699999999999876 6678
Q ss_pred EEEEecCCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCcEEEeccccc
Q 003301 731 ALVLEYMPNGSLEDYLYSNN-FSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK---DMVAHLSDFGIA 806 (832)
Q Consensus 731 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~DFg~a 806 (832)
|+||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.||+||||||+||+++. ++.+||+|||+|
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a 167 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 167 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence 99999999999999998754 35899999999999999999999 999999999999999998 789999999999
Q ss_pred cccCCCc
Q 003301 807 KLLSGEE 813 (832)
Q Consensus 807 ~~~~~~~ 813 (832)
.......
T Consensus 168 ~~~~~~~ 174 (299)
T 3m2w_A 168 KETTGEK 174 (299)
T ss_dssp EECTTCG
T ss_pred ccccccc
Confidence 8765443
No 347
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6.2e-24 Score=228.88 Aligned_cols=252 Identities=17% Similarity=0.210 Sum_probs=164.1
Q ss_pred ccccccccccccCCChhhhhcC--CCceEEEccCCcccccCCCCccCCCCccEEECcCCccccc-CCCCCcCCCcCceEE
Q 003301 73 TGMDFSNNSLTGSLPDDMCRRL--PLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTER-IPRGLGNLTSLKTLY 149 (832)
Q Consensus 73 ~~L~ls~n~l~~~lp~~~~~~l--~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~ 149 (832)
+.+|+++|.+. +..+..+ +.++.|++++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 50 ~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 50 QTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred eeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 66677776554 2223345 6777788888877755444 55677788888888777654 666677777888888
Q ss_pred ecccccccccCccccCccccceeccccc-ccccc-cCcccccCCcccEEEecCC-CCCCC-CCccccccCCC-CccEEEc
Q 003301 150 LGFNNLTGEIPYEMGNLRNLEILGLQLN-KLVGF-VPTSIFNLSAMKTLALPSN-ALSGS-LPSSIDLVRLP-NLEIISL 224 (832)
Q Consensus 150 Ls~N~i~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~~~l~-~L~~L~L 224 (832)
|++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++.. +..++ +|++|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~~L~~L~l 202 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA--VAHVSETITQLNL 202 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH--HHHSCTTCCEEEC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH--HHhcccCCCEEEe
Confidence 8888777667777777788888888877 56542 4555677778888888887 76632 2322 34567 7788888
Q ss_pred cCC--ccc-cccCCcccCCCCccEEEcCCCc-CcccCCccccCccccceeeccccc-CCCCCCccccccccccCCCCcEE
Q 003301 225 AGN--NFS-GIIPSFIFNASKLSVLELGENS-FSGFIPNTLGNLRKLEWLRLSYNF-LTSSTSELSFLSSWANCKNLKLL 299 (832)
Q Consensus 225 s~n--~i~-~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~~l~~L~~L 299 (832)
++| .++ ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.. .....+..+++|+.|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-----ETLLELGEIPTLKTL 277 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-----GGGGGGGGCTTCCEE
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-----HHHHHHhcCCCCCEE
Confidence 877 344 3445566677888888888887 666666677777888888888875 221 112346677888888
Q ss_pred eccCCCCCCCCCCcccccccccceEEeecCccccccccccc
Q 003301 300 DLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIG 340 (832)
Q Consensus 300 ~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 340 (832)
++++| ++ ...+..+...++.|++++|++++..|..++
T Consensus 278 ~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 278 QVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eccCc-cC---HHHHHHHHhhCcceEEecccCccccCCccc
Confidence 88877 32 223333322355555555555555554443
No 348
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.88 E-value=1.5e-23 Score=231.88 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=126.2
Q ss_pred hcCCCCCCeeeccCCceEEEEEec-CCcEEEEEEEeccch---hhHHHHHHHHHHHhcCCC-Cceee-------------
Q 003301 658 TNQFNASNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE---GALKSFDVECEVLKSVRH-RNLVK------------- 719 (832)
Q Consensus 658 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h-~niv~------------- 719 (832)
...|...+.||+|+||+||+|.+. +|+.||||++..... ...+.+.+|+.+++.++| ++...
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 345778899999999999999975 589999999874332 235778999999999976 22111
Q ss_pred --------eceEEec-----CCeeEEEEecCCCCCHHHHHh------hCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 003301 720 --------IISSCTN-----NDFKALVLEYMPNGSLEDYLY------SNNFSFDILQRLSVIIDVALALEYLHFGYSNPV 780 (832)
Q Consensus 720 --------l~~~~~~-----~~~~~lv~e~~~~g~L~~~l~------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~i 780 (832)
+..++.. ....+++|+++ +++|.++++ .....+++..+..++.|++.||+||| ++||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCc
Confidence 1111111 12457788877 789999984 22334778889999999999999999 9999
Q ss_pred EecCCCCCCeEeCCCCcEEEeccccccccCCCcccccccccccccccCCCCC
Q 003301 781 VHCDIKPSNVLLDKDMVAHLSDFGIAKLLSGEESMKQTLTLATIGYMAPGLF 832 (832)
Q Consensus 781 vH~Dlkp~NIl~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~gt~~y~APE~l 832 (832)
+||||||+|||++.++.+||+|||+|+..... ....+| +.|||||++
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~ 279 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETT 279 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhh
Confidence 99999999999999999999999999875332 233567 999999963
No 349
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.87 E-value=8.5e-23 Score=212.73 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=115.4
Q ss_pred HHHHHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccch------------------hhHHHHHHHHHHHhcCCC
Q 003301 653 ELLQATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLE------------------GALKSFDVECEVLKSVRH 714 (832)
Q Consensus 653 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~e~~~l~~l~h 714 (832)
.+......|.+.+.||+|+||.||+|.+.+|+.||+|+++.... .....+.+|++++++++
T Consensus 84 ~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~- 162 (282)
T 1zar_A 84 RLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ- 162 (282)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-
Confidence 34455567778899999999999999996799999999864321 13456889999999998
Q ss_pred CceeeeceEEecCCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC
Q 003301 715 RNLVKIISSCTNNDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK 794 (832)
Q Consensus 715 ~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~ 794 (832)
| +++.+++.. +..|+||||++|++|.+ +.. .....++.|++.|++||| +.||+||||||+||+++
T Consensus 163 -~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~- 227 (282)
T 1zar_A 163 -G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV-------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS- 227 (282)
T ss_dssp -T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-
T ss_pred -C-CCcCeEEec-cceEEEEEecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-
Confidence 4 666665544 55699999999999988 422 124469999999999999 99999999999999999
Q ss_pred CCcEEEecccccccc
Q 003301 795 DMVAHLSDFGIAKLL 809 (832)
Q Consensus 795 ~~~~kl~DFg~a~~~ 809 (832)
++.+||+|||+|+..
T Consensus 228 ~~~vkl~DFG~a~~~ 242 (282)
T 1zar_A 228 EEGIWIIDFPQSVEV 242 (282)
T ss_dssp TTEEEECCCTTCEET
T ss_pred CCcEEEEECCCCeEC
Confidence 999999999999854
No 350
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.3e-21 Score=194.75 Aligned_cols=132 Identities=26% Similarity=0.231 Sum_probs=58.4
Q ss_pred cccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCC
Q 003301 344 NLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLA 423 (832)
Q Consensus 344 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 423 (832)
+|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34444444444444444444444444444444444443333334444444444444444443333334444444444444
Q ss_pred CCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCccc
Q 003301 424 SNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNL 475 (832)
Q Consensus 424 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 475 (832)
+|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 4444444444444444444444444444433333334444444444444433
No 351
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=7.8e-22 Score=196.47 Aligned_cols=178 Identities=24% Similarity=0.243 Sum_probs=96.5
Q ss_pred cEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCC
Q 003301 346 RELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASN 425 (832)
Q Consensus 346 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 425 (832)
+.++.+++.++.. |..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 3455555555532 2222 235666666666666544445556666666666666666554455566666666666666
Q ss_pred cCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCc
Q 003301 426 ELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPK 505 (832)
Q Consensus 426 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 505 (832)
+++++.+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 6665555555555555555555555555444445555555555555555554444445555555555555554442
Q ss_pred cccCCCCCCeeccCCCcccccCchhhhh
Q 003301 506 SIGGLVSLESLDLSNNSLSGNIPTSMEK 533 (832)
Q Consensus 506 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 533 (832)
.+++|+.|+++.|+++|.+|+.++.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCcc
Confidence 2234555555555555555554443
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.5e-21 Score=221.80 Aligned_cols=189 Identities=24% Similarity=0.343 Sum_probs=112.3
Q ss_pred CCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEc
Q 003301 295 NLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDL 374 (832)
Q Consensus 295 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 374 (832)
+|+.|+|++|.+++ +|..+. .+|++|++++|+|+ .+| ..+ ++|++|+|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l------------------------~~L~~L~L 107 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELP------------------------ASLEYLDA 107 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCC------------------------TTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---ccc------------------------CCCCEEEc
Confidence 78888888887775 444332 24555555555555 233 223 44455555
Q ss_pred cCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCC
Q 003301 375 VNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGS 454 (832)
Q Consensus 375 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 454 (832)
++|+|++ +|. +.. +|++|+|++|+|++ +|. .+++|+.|+|++|.|+++ |. .+++|++|+|++|+|++
T Consensus 108 s~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~- 174 (571)
T 3cvr_A 108 CDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF- 174 (571)
T ss_dssp CSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-
T ss_pred cCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-
Confidence 5555543 333 332 45555555555553 333 345555555555555542 22 34555556666666554
Q ss_pred CccccccccccceecccCcccCCccCCcccccccc-------ceeecccccccccCCccccCCCCCCeeccCCCcccccC
Q 003301 455 LPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNL-------QDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNI 527 (832)
Q Consensus 455 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 527 (832)
+|. |. ++|+.|+|++|+|+ .+|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 344 44 56666666666666 4444 443 55 88888888888 57877777888999999999998888
Q ss_pred chhhhhhcc
Q 003301 528 PTSMEKLLY 536 (832)
Q Consensus 528 p~~~~~l~~ 536 (832)
|..+..+..
T Consensus 247 p~~l~~l~~ 255 (571)
T 3cvr_A 247 RESLSQQTA 255 (571)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 888887754
No 353
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=2.6e-21 Score=219.72 Aligned_cols=182 Identities=25% Similarity=0.305 Sum_probs=157.4
Q ss_pred cccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCC
Q 003301 344 NLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLA 423 (832)
Q Consensus 344 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 423 (832)
+|+.|+|++|++++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|++++|+|++ +|. |.+ +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999987 555443 78999999999999 677 457899999999999997 666 665 99999999
Q ss_pred CCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccC
Q 003301 424 SNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSI 503 (832)
Q Consensus 424 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 503 (832)
+|.|+++ |. .+++|+.|++++|+|++ +|. .+++|+.|+|++|+|++ +|. |. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTML-PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCCC-CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 9999994 44 68999999999999997 555 67899999999999996 666 76 89999999999999 67
Q ss_pred CccccCCCCC-------CeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCC
Q 003301 504 PKSIGGLVSL-------ESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 504 p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 77 665 77 99999999999 5888888899999999999999998875
No 354
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.4e-21 Score=212.05 Aligned_cols=180 Identities=27% Similarity=0.243 Sum_probs=120.1
Q ss_pred ceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCC-CCCCCCeEeCCCCcCCCCCCcccccCcccceeeecC
Q 003301 370 QGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIG-DLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSS 448 (832)
Q Consensus 370 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 448 (832)
+.+++++|+++ .+|..+. ..++.|+|++|+|++..+..|. .+++|+.|+|++|+|+++.+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 35555555555 3444333 3456666666666655555555 666666666666666666666666666677777777
Q ss_pred CcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccc---cCCCCCCeeccCCCcccc
Q 003301 449 NFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSI---GGLVSLESLDLSNNSLSG 525 (832)
Q Consensus 449 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~ 525 (832)
|+|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77666556667777777777777777776667777777777777777777775444444 567788888888888887
Q ss_pred cCchhhhhhcc--CCeeeCCCCcccccCC
Q 003301 526 NIPTSMEKLLY--LKDLNLSFNKLEGEIP 552 (832)
Q Consensus 526 ~~p~~~~~l~~--L~~l~l~~N~l~~~~p 552 (832)
..+..+..++. ++.|+|++|+|.|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 66667777766 4778888888887654
No 355
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=7.7e-22 Score=197.94 Aligned_cols=136 Identities=26% Similarity=0.272 Sum_probs=81.0
Q ss_pred CCeEeCCCCcCCCCCC-cccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecc
Q 003301 417 LRLLSLASNELNSVIP-STFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLR 495 (832)
Q Consensus 417 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 495 (832)
++.|+|++|.|++..+ ..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3455555555544432 334555555555555555555444455555566666666666655555556666666666666
Q ss_pred cccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCC
Q 003301 496 DNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 496 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
+|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|+|.++
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 666666556666666666666666666666666666666666666666666666655
No 356
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=6.9e-21 Score=191.01 Aligned_cols=137 Identities=20% Similarity=0.267 Sum_probs=72.3
Q ss_pred CCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecc
Q 003301 416 SLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLR 495 (832)
Q Consensus 416 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 495 (832)
+|+.|++++|.|+++.+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|+.|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 34444444444444444444444444444444444444444445555555555555555554444445555555555555
Q ss_pred cccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCC
Q 003301 496 DNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 496 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
+|+|++..|..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+|.|.+.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 555555555555555556666666666555555555555666666666666655443
No 357
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=187.76 Aligned_cols=156 Identities=22% Similarity=0.263 Sum_probs=124.0
Q ss_pred ceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCc-ccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecC
Q 003301 370 QGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIP-PCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSS 448 (832)
Q Consensus 370 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 448 (832)
+++++++|.++ .+|..+. ..+++|+|++|++++..| ..|..+++|+.|+|++|+|+++.+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 36666666666 3554443 345677777777775543 4467778888888888888877777888888888888888
Q ss_pred CcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCc
Q 003301 449 NFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIP 528 (832)
Q Consensus 449 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 528 (832)
|++++..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88887777778888888889999999988888889999999999999999998888999999999999999999987665
No 358
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=3.5e-20 Score=187.19 Aligned_cols=156 Identities=24% Similarity=0.328 Sum_probs=83.3
Q ss_pred CceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecC
Q 003301 369 LQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSS 448 (832)
Q Consensus 369 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 448 (832)
-+.++.++++++ .+|..+. ++|++|+|++|++++..|..|..+++|+.|+|++|+|+.+.+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666666655 3444333 4555555555555555555555555555555555555554444445555555555555
Q ss_pred CcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCc
Q 003301 449 NFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIP 528 (832)
Q Consensus 449 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 528 (832)
|+| ++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+
T Consensus 98 N~l------------------------~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 98 NQL------------------------TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCC------------------------CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CcC------------------------CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 544 4444444455555555555555555 445555555555555555555554444
Q ss_pred hhhhhhccCCeeeCCCCcccccCC
Q 003301 529 TSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 529 ~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
..+..+++|+.|+|++|+++|.++
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHhCCCCCCEEEeeCCCccCCcc
Confidence 455555555555555555555554
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=2e-20 Score=196.32 Aligned_cols=171 Identities=26% Similarity=0.397 Sum_probs=94.4
Q ss_pred CcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeE
Q 003301 341 NLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLL 420 (832)
Q Consensus 341 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 420 (832)
.+++|+.|++++|.+... + .+..+++|++|+|++|++++..+ +..+++|++|++++|++++ +| .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 445556666666655533 2 25555666666666666654322 5556666666666666653 22 35566666666
Q ss_pred eCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeeccccccc
Q 003301 421 SLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQ 500 (832)
Q Consensus 421 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 500 (832)
++++|++++. ..+..+++|+.|++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|+|++|+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 6666666553 3455555555555655555543 345555555556666665554333 555555666666666555
Q ss_pred ccCCccccCCCCCCeeccCCCcccc
Q 003301 501 GSIPKSIGGLVSLESLDLSNNSLSG 525 (832)
Q Consensus 501 ~~~p~~~~~l~~L~~L~Ls~N~l~~ 525 (832)
+ +| .+..+++|+.|++++|+++.
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-Ch-hhccCCCCCEEECcCCcccC
Confidence 3 22 25555555666666555553
No 360
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=3.7e-20 Score=185.62 Aligned_cols=154 Identities=22% Similarity=0.283 Sum_probs=118.8
Q ss_pred ceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCC
Q 003301 370 QGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSN 449 (832)
Q Consensus 370 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 449 (832)
+.+++++|.++ .+|..+. ++++.|++++|+|++..+..|..+++|+.|+|++|+++++.|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666666 4454443 56777777777777666667777777777777777777777777777778888888888
Q ss_pred cccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCccccc
Q 003301 450 FLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGN 526 (832)
Q Consensus 450 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 526 (832)
+|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|++...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 88766666677888888888888888887788888888888888888888877777888888999999999988754
No 361
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.9e-19 Score=181.78 Aligned_cols=157 Identities=25% Similarity=0.272 Sum_probs=118.7
Q ss_pred cccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCC
Q 003301 344 NLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLA 423 (832)
Q Consensus 344 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 423 (832)
..+.++.+++.+.. +|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|+
T Consensus 20 s~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 35789999999884 554443 789999999999999889999999999999999999997777889999999999999
Q ss_pred CCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccC
Q 003301 424 SNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSI 503 (832)
Q Consensus 424 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 503 (832)
+|+|+++.+..|..+++|++|+|++|+|+ .+|..+..+++ |+.|+|++|+|++..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~------------------------L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH------------------------LTHLALDQNQLKSIP 151 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT------------------------CSEEECCSSCCCCCC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC------------------------CCEEECCCCcCCccC
Confidence 99999988877877777777777777766 34554444444 455555555555444
Q ss_pred CccccCCCCCCeeccCCCcccccCc
Q 003301 504 PKSIGGLVSLESLDLSNNSLSGNIP 528 (832)
Q Consensus 504 p~~~~~l~~L~~L~Ls~N~l~~~~p 528 (832)
+..|..+++|+.|+|++|++++..+
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 4455555666666666666655443
No 362
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=7.8e-20 Score=191.81 Aligned_cols=151 Identities=28% Similarity=0.370 Sum_probs=88.5
Q ss_pred ccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCC
Q 003301 339 IGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLR 418 (832)
Q Consensus 339 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 418 (832)
+..+++|++|++++|++++..+ +..+++|++|+|++|++++ +| .+..+++|++|++++|++++. ..+..+++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 137 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence 3344455555555555544333 5555555555555555553 22 255555555556665555532 3455566666
Q ss_pred eEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeeccccc
Q 003301 419 LLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNG 498 (832)
Q Consensus 419 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 498 (832)
.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|+|++|++++. | .+..+++|+.|++++|+
T Consensus 138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEE
T ss_pred EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCc
Confidence 666666666554 455666666666666666665433 66677777777777777643 3 36777777777777777
Q ss_pred ccc
Q 003301 499 LQG 501 (832)
Q Consensus 499 l~~ 501 (832)
++.
T Consensus 212 i~~ 214 (291)
T 1h6t_A 212 CLN 214 (291)
T ss_dssp EEC
T ss_pred ccC
Confidence 775
No 363
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=9.6e-20 Score=209.41 Aligned_cols=175 Identities=25% Similarity=0.377 Sum_probs=102.9
Q ss_pred cCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCe
Q 003301 340 GNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRL 419 (832)
Q Consensus 340 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 419 (832)
..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..| +..+++|+.|+|++|++++ +| .+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 3455556666666655532 2 35556666666666666654333 5556666666666666653 22 4566666666
Q ss_pred EeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccc
Q 003301 420 LSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGL 499 (832)
Q Consensus 420 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 499 (832)
|+|++|+++++ ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|+|
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 66666666553 3355666666666666666643 456666666666666666665444 66666666666666666
Q ss_pred cccCCccccCCCCCCeeccCCCcccccCc
Q 003301 500 QGSIPKSIGGLVSLESLDLSNNSLSGNIP 528 (832)
Q Consensus 500 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 528 (832)
++. ..+..+++|+.|+|++|++++...
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 642 246666666666666666665433
No 364
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.1e-19 Score=197.20 Aligned_cols=156 Identities=26% Similarity=0.223 Sum_probs=76.6
Q ss_pred ccEEEeecCccccccccccc-CCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCC
Q 003301 345 LRELGLWGNELIGSIPITFG-KLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLA 423 (832)
Q Consensus 345 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 423 (832)
++.|+|++|+|++..+..|. .+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|.++++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 34444444444443333443 44444444444444443333444444444444444444444434444445555555555
Q ss_pred CCcCCCCCCcccccCcccceeeecCCcccCCCcccc---ccccccceecccCcccCCccCCccccccc--cceeeccccc
Q 003301 424 SNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDI---GNLKVVVIIDLSRNNLSGDIPTAIGGLMN--LQDLSLRDNG 498 (832)
Q Consensus 424 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~Ls~N~ 498 (832)
+|+|+++.|..|.++++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..|..++. ++.|+|++|.
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 555554444555555555555555555554333333 34556666666666666544455555555 3667777776
Q ss_pred cc
Q 003301 499 LQ 500 (832)
Q Consensus 499 l~ 500 (832)
+.
T Consensus 201 ~~ 202 (361)
T 2xot_A 201 LE 202 (361)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 365
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=2.2e-19 Score=206.35 Aligned_cols=171 Identities=24% Similarity=0.334 Sum_probs=80.4
Q ss_pred CccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCc
Q 003301 263 NLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNL 342 (832)
Q Consensus 263 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 342 (832)
.+++|+.|++++|.+..++ .+..+++|+.|+|++|++.+..+ +..+. +|+.|+|++|.+++. ..+..+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l--~~l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP--LTNLK-NLGWLFLDENKIKDL--SSLKDL 108 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-------TGGGCTTCCEEECTTSCCCCCGG--GGGCT-TCCEEECCSSCCCCC--TTSTTC
T ss_pred cCCCCCEEECcCCCCCCCh-------HHccCCCCCEEEeeCCCCCCChh--hccCC-CCCEEECcCCCCCCC--hhhccC
Confidence 4444444444444444321 13444444444444444443222 22222 333344444433321 134455
Q ss_pred CcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeC
Q 003301 343 INLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSL 422 (832)
Q Consensus 343 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 422 (832)
++|+.|+|++|++.+. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|
T Consensus 109 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 5555555555555432 2345555555555555555532 345555555555555555554333 555555555555
Q ss_pred CCCcCCCCCCcccccCcccceeeecCCcccC
Q 003301 423 ASNELNSVIPSTFWNLKDILSLNFSSNFLNG 453 (832)
Q Consensus 423 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 453 (832)
++|+|+++ ..+..+++|+.|+|++|.+.+
T Consensus 183 s~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 183 SKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 55555543 234555555555555555544
No 366
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=4.6e-20 Score=190.41 Aligned_cols=171 Identities=22% Similarity=0.288 Sum_probs=104.9
Q ss_pred CcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeE
Q 003301 341 NLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLL 420 (832)
Q Consensus 341 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 420 (832)
++.+++.+++++|.+++.. .+..+++|++|++++|+++. ++ .+..+++|++|++++|++++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3455666666666666433 45666677777777777663 34 56666777777777777764433 6667777777
Q ss_pred eCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeeccccccc
Q 003301 421 SLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQ 500 (832)
Q Consensus 421 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 500 (832)
++++|++++..+... ++|+.|++++|++++. +.+..+++|+.|+|++|++++. + .++.+++|+.|+|++|+++
T Consensus 91 ~L~~N~l~~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 777777766433221 6666666666666642 2466666666666666666643 2 4566666666666666666
Q ss_pred ccCCccccCCCCCCeeccCCCccccc
Q 003301 501 GSIPKSIGGLVSLESLDLSNNSLSGN 526 (832)
Q Consensus 501 ~~~p~~~~~l~~L~~L~Ls~N~l~~~ 526 (832)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 44 4556666666666666666544
No 367
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=3.9e-21 Score=219.74 Aligned_cols=204 Identities=23% Similarity=0.246 Sum_probs=125.5
Q ss_pred cCccccCeEeccCCccccCCCccccccccCcEEEccCCc-------------CCCCCCCcccCccccccccc-ccccccc
Q 003301 18 GNLTMLKKLGLGYNKLRGEIPQELGNLAELELVSLTNNF-------------LSGTIPSTIFNLSSLSTGMD-FSNNSLT 83 (832)
Q Consensus 18 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~-------------l~~~~p~~l~~l~~l~~~L~-ls~n~l~ 83 (832)
...+.|+.|+|++|+++ .+|+.++.+++|+.|++++|. ..+.+|+.++.+++| +.|| ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L-~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL-KAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH-HHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhc-ccCcchhhcccc
Confidence 66888999999999998 889999999999999998775 556677777888887 7787 6666544
Q ss_pred cCCChhhhhcCCCceEEEccCCcccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccc
Q 003301 84 GSLPDDMCRRLPLIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEM 163 (832)
Q Consensus 84 ~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~ 163 (832)
. |+.+++++|.++...+ ..|++|+|++|+|++ +|. |+.+++|++|+|++|+|+ .+|..|
T Consensus 424 -~-----------L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~ 482 (567)
T 1dce_A 424 -D-----------LRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL 482 (567)
T ss_dssp -H-----------HHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred -h-----------hhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh
Confidence 2 2233344444442111 135555666665553 343 555556666666666655 455555
Q ss_pred cCccccceecccccccccccCcccccCCcccEEEecCCCCCCCC-CccccccCCCCccEEEccCCccccccCCc---ccC
Q 003301 164 GNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSL-PSSIDLVRLPNLEIISLAGNNFSGIIPSF---IFN 239 (832)
Q Consensus 164 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~~ 239 (832)
+++++|+.|+|++|++++ +| .+.++++|++|+|++|.+++.. |..+ ..+++|+.|+|++|.+++.+|.. +..
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l--~~l~~L~~L~L~~N~l~~~~~~~~~l~~~ 558 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL--VSCPRLVLLNLQGNSLCQEEGIQERLAEM 558 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG--GGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH--hcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence 556666666666666554 33 5555666666666666655443 4433 45566666666666665544422 223
Q ss_pred CCCccEEEc
Q 003301 240 ASKLSVLEL 248 (832)
Q Consensus 240 l~~L~~L~L 248 (832)
+++|+.|++
T Consensus 559 lp~L~~L~l 567 (567)
T 1dce_A 559 LPSVSSILT 567 (567)
T ss_dssp CTTCSEEEC
T ss_pred CcccCccCC
Confidence 566666653
No 368
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=8.1e-22 Score=225.35 Aligned_cols=200 Identities=23% Similarity=0.233 Sum_probs=123.2
Q ss_pred ccceEEeecCcccccccccccCcCcccEEEeecCc-------------ccccccccccCCCCCceEE-ccCCccCCCCch
Q 003301 320 SLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNE-------------LIGSIPITFGKLQNLQGLD-LVNNKLEGPIPN 385 (832)
Q Consensus 320 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~ 385 (832)
+|+.|+|++|+++ .+|..++++++|++|++++|. +.+..|..++.+++|+.|+ ++.|.+.
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~----- 423 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD----- 423 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-----
T ss_pred cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-----
Confidence 3444444444443 345555555555555554443 3344455555555555555 4444332
Q ss_pred hhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCcccccccccc
Q 003301 386 GLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVV 465 (832)
Q Consensus 386 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 465 (832)
.|..+.+++|.+++..+ ..|+.|+|++|.|+++ |. |..+++|+.|+|++|+|+ .+|..|+.+++|
T Consensus 424 ------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 488 (567)
T 1dce_A 424 ------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488 (567)
T ss_dssp ------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred ------hhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCC
Confidence 23333444555542211 1367777777777663 44 777777777777777777 567777777777
Q ss_pred ceecccCcccCCccCCccccccccceeecccccccccC-CccccCCCCCCeeccCCCcccccCchh---hhhhccCCeee
Q 003301 466 VIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSI-PKSIGGLVSLESLDLSNNSLSGNIPTS---MEKLLYLKDLN 541 (832)
Q Consensus 466 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~l~ 541 (832)
+.|+|++|+|++ +| .|+++++|+.|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|.. +..+++|+.||
T Consensus 489 ~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 489 EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 777777777775 45 6777777788888888777665 777777888888888888877665532 33467777776
Q ss_pred C
Q 003301 542 L 542 (832)
Q Consensus 542 l 542 (832)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 4
No 369
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=1.3e-18 Score=170.39 Aligned_cols=156 Identities=25% Similarity=0.295 Sum_probs=98.7
Q ss_pred cEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCc-ccccCcccceeeecCCcccCCCccccccccccceecccC
Q 003301 394 SVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPS-TFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSR 472 (832)
Q Consensus 394 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 472 (832)
+.+++++|.++ .+|..+.. +|+.|++++|.++++.+. .|..+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554 34443322 566666666666665553 366666666666666666666666677777777777777
Q ss_pred cccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCC
Q 003301 473 NNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 473 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
|+|++..+..|.++++|++|+|++|+|++.+|..|+.+++|++|+|++|++++..+-... ...++...+..+...|.-|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCC
Confidence 777766666777777777777777777777777777777777777777777766553211 1123333445555555555
Q ss_pred C
Q 003301 553 R 553 (832)
Q Consensus 553 ~ 553 (832)
.
T Consensus 167 ~ 167 (192)
T 1w8a_A 167 S 167 (192)
T ss_dssp T
T ss_pred h
Confidence 4
No 370
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=2.7e-19 Score=184.65 Aligned_cols=169 Identities=20% Similarity=0.264 Sum_probs=125.3
Q ss_pred ccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEec
Q 003301 320 SLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMD 399 (832)
Q Consensus 320 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 399 (832)
.+..+++++|.+++.. .+..+++|++|++++|+++. ++ .+..+++|++|+|++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444455555555332 46667778888888887774 33 57777888888888888875433 7778888888888
Q ss_pred CCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCcc
Q 003301 400 GNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDI 479 (832)
Q Consensus 400 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 479 (832)
+|++++. |. +.. ++|+.|++++|++++. ..+..+++|+.|++++|++++. + .++.+++|+.|+|++|++++.
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 8888753 33 223 7888888888888774 3578888888888888888864 3 688888899999999998865
Q ss_pred CCccccccccceeecccccccccC
Q 003301 480 PTAIGGLMNLQDLSLRDNGLQGSI 503 (832)
Q Consensus 480 ~~~~~~l~~L~~L~Ls~N~l~~~~ 503 (832)
..+..+++|+.|++++|++++..
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECCC
T ss_pred -HHhccCCCCCEEeCCCCcccCCc
Confidence 67888999999999999998653
No 371
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=1.5e-19 Score=213.33 Aligned_cols=228 Identities=22% Similarity=0.248 Sum_probs=113.6
Q ss_pred CCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEE
Q 003301 294 KNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLD 373 (832)
Q Consensus 294 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 373 (832)
+.++.|+|.+|.+... +.. .++.++|+.|.|. .++++.|.+. ..+..|..++.|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~------~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA------LLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCcc-hhh------HhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEE
Confidence 4566777777766532 211 3344445444433 3344555555 5677788888888888
Q ss_pred ccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccC
Q 003301 374 LVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNG 453 (832)
Q Consensus 374 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 453 (832)
|++|++. .+|..+..+++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|+ .+|..|.++++|++|+|++|.|+
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 8888887 56666677888888888888888 67777888888888888888888 45777888888888888888887
Q ss_pred CCccccccccccceecccCcccCCccCCccccccc-cceeecccccccccCCccccCCCCCCeeccCCC--------ccc
Q 003301 454 SLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMN-LQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNN--------SLS 524 (832)
Q Consensus 454 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~ 524 (832)
.+|..|+.+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++| .|.
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~ 380 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQ 380 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCcc
Confidence 56777888888888888888888888877766533 234788888888877764 455666666 455
Q ss_pred ccCchhhhhhccCCeeeCCCCcccccCCC
Q 003301 525 GNIPTSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 525 ~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
+..+..+..+..+....+++|-+.+....
T Consensus 381 ~~~~~~~~~l~~~~~~~ls~Nil~~~~~~ 409 (727)
T 4b8c_D 381 QSTEHLATDLAKRTFTVLSYNTLCQHYAT 409 (727)
T ss_dssp ---------------------CCCGGGCC
T ss_pred ccccchhhcccccceeeeeccccccccCc
Confidence 55555566666777778888887654443
No 372
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=3.3e-19 Score=190.92 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=108.6
Q ss_pred CCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccC----CCCCCccccccccc
Q 003301 216 LPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFL----TSSTSELSFLSSWA 291 (832)
Q Consensus 216 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~~~~~ 291 (832)
+++|+.|+|.+ .++.+.+.+|.++++|++|++++|.+..+.+.+|.++.++..+.+..+.. ..+.. .+|.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-----~~f~ 173 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-----FAFI 173 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-----SCEE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-----cccc
Confidence 56666666666 66666666777777777777777777767777777766666666554221 11111 2355
Q ss_pred cCCCCc-EEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCc
Q 003301 292 NCKNLK-LLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQ 370 (832)
Q Consensus 292 ~l~~L~-~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 370 (832)
.+..|+ .+.+.... .++..+... -....+++.+.+.++-...........+++|+
T Consensus 174 ~~~~L~~~i~~~~~~---~l~~~~~~~---------------------~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~ 229 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG---KLEDEIMKA---------------------GLQPRDINFLTIEGKLDNADFKLIRDYMPNLV 229 (329)
T ss_dssp ESCCCEEEEEECTTC---CHHHHHHHT---------------------TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCC
T ss_pred cccccceeEEecCCC---cHHHHHhhc---------------------ccCccccceEEEeeeecHHHHHHHHHhcCCCe
Confidence 666666 44443321 111111100 01122333333333311111110111234455
Q ss_pred eEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCC-eEeCCCCcCCCCCCcccccCcccceeeecCC
Q 003301 371 GLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLR-LLSLASNELNSVIPSTFWNLKDILSLNFSSN 449 (832)
Q Consensus 371 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 449 (832)
.|+|++|+++...+.+|.++.+|+.+++.+| ++...+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|
T Consensus 230 ~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 230 SLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp EEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred EEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence 5555554444333344555555555555544 4434444555555555 555555 455555555555555555555555
Q ss_pred cccCCCccccccccccceec
Q 003301 450 FLNGSLPEDIGNLKVVVIID 469 (832)
Q Consensus 450 ~l~~~~~~~~~~l~~L~~L~ 469 (832)
+++...+..|.++++|+.++
T Consensus 308 ~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 308 KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCCEECTTTTCTTCCCCEEE
T ss_pred ccCccchhhhcCCcchhhhc
Confidence 55554455555555555543
No 373
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=2.5e-19 Score=175.55 Aligned_cols=155 Identities=26% Similarity=0.340 Sum_probs=131.1
Q ss_pred CeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCcc-ccccccccceecccCcccCCccCCccccccccceeeccc
Q 003301 418 RLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPE-DIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRD 496 (832)
Q Consensus 418 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 496 (832)
+.+++++|.++.+ |..+.. ++++|++++|++++..+. .|+.+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~i-p~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSC-CSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcC-ccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 7899999999764 444433 899999999999987664 489999999999999999999999999999999999999
Q ss_pred ccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCCCCCCCCcCCCcccCCCCCCCCc
Q 003301 497 NGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPRGGPFANFSNRSFMGNDLLCGLA 575 (832)
Q Consensus 497 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 575 (832)
|+|++..|..|+.+++|++|+|++|++++.+|..+..+++|++|+|++|+|+|.++-......+....+.++...|+.|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999998752111112223445555566654
No 374
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=6.8e-19 Score=173.37 Aligned_cols=151 Identities=21% Similarity=0.277 Sum_probs=69.5
Q ss_pred CCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceee
Q 003301 366 LQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLN 445 (832)
Q Consensus 366 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 445 (832)
+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444444 223 34444444444444444331 12344444555555555544444444444444444444
Q ss_pred ecCCcccCCCccccccccccceecccCcc-cCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCccc
Q 003301 446 FSSNFLNGSLPEDIGNLKVVVIIDLSRNN-LSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLS 524 (832)
Q Consensus 446 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 524 (832)
+++|++++..|..++.+++|++|++++|+ ++ .+| .+.++++|+.|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 44444444444445555555555555554 33 222 34555555555555555553 22 4445555555555555543
No 375
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.77 E-value=5.2e-19 Score=181.94 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=109.3
Q ss_pred CCCCCCeeeccCCceEEEEEe-cCCcE--EEEEEEeccchh------------------------hHHHHHHHHHHHhcC
Q 003301 660 QFNASNLIGTGGFGSVYKGSF-LDGME--VAIKVFHLQLEG------------------------ALKSFDVECEVLKSV 712 (832)
Q Consensus 660 ~~~~~~~lg~G~~g~V~~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~e~~~l~~l 712 (832)
-|++.+.||+|+||.||+|.+ .+|+. ||||+++..... ....+.+|+++++++
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999988 67888 999987543111 113678899999999
Q ss_pred CCCce--eeeceEEecCCeeEEEEecCCC-C----CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCC
Q 003301 713 RHRNL--VKIISSCTNNDFKALVLEYMPN-G----SLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDI 785 (832)
Q Consensus 713 ~h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl 785 (832)
.|+++ +..+++ +..++||||+.+ | +|.++... .++..+..++.|++.|++|||. +.||+||||
T Consensus 128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDl 197 (258)
T 1zth_A 128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQ--EAELVHADL 197 (258)
T ss_dssp HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSC
T ss_pred HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCC
Confidence 88764 334432 356899999942 3 77776543 2344677899999999999994 579999999
Q ss_pred CCCCeEeCCCCcEEEeccccccccCCC
Q 003301 786 KPSNVLLDKDMVAHLSDFGIAKLLSGE 812 (832)
Q Consensus 786 kp~NIl~~~~~~~kl~DFg~a~~~~~~ 812 (832)
||+|||++. .++|+|||+|.....+
T Consensus 198 kp~NILl~~--~~~liDFG~a~~~~~~ 222 (258)
T 1zth_A 198 SEYNIMYID--KVYFIDMGQAVTLRHP 222 (258)
T ss_dssp STTSEEESS--SEEECCCTTCEETTST
T ss_pred CHHHEEEcC--cEEEEECcccccCCCc
Confidence 999999988 9999999999876443
No 376
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=7.6e-19 Score=173.03 Aligned_cols=155 Identities=16% Similarity=0.253 Sum_probs=137.0
Q ss_pred hcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccc
Q 003301 387 LCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVV 466 (832)
Q Consensus 387 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 466 (832)
...+++|++|++++|.++ .+| .+..+++|++|++++|.++.. ..+..+++|++|++++|++++..|..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 356788999999999999 556 689999999999999977653 4789999999999999999988899999999999
Q ss_pred eecccCcccCCccCCccccccccceeeccccc-ccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCC
Q 003301 467 IIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNG-LQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFN 545 (832)
Q Consensus 467 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N 545 (832)
+|+|++|++++..|..++++++|+.|+|++|+ ++ .+| .++.+++|+.|++++|++++ ++ .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 99999999998889999999999999999998 65 566 79999999999999999996 44 7889999999999999
Q ss_pred cccc
Q 003301 546 KLEG 549 (832)
Q Consensus 546 ~l~~ 549 (832)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 9864
No 377
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2.6e-19 Score=211.17 Aligned_cols=190 Identities=21% Similarity=0.200 Sum_probs=113.0
Q ss_pred EeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCC
Q 003301 325 FISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLS 404 (832)
Q Consensus 325 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 404 (832)
++..|.+. ..+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|+|+ .+|..|..+++|++|+|++|+|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 33444444 55677788888888888888887 45555668888888888888888 77888888888888888888888
Q ss_pred CCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccc-cceecccCcccCCccCCcc
Q 003301 405 GPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKV-VVIIDLSRNNLSGDIPTAI 483 (832)
Q Consensus 405 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~ 483 (832)
.+|..|+.+++|++|+|++|.|+. +|..|..+++|+.|+|++|.|++.+|..+..+.. +..++|++|.+++.+|..+
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred -ccChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 678888888888888888888874 5666888888888888888888888877766533 2347888888888877654
Q ss_pred ccccccceeecccc--------cccccCCccccCCCCCCeeccCCCcccc
Q 003301 484 GGLMNLQDLSLRDN--------GLQGSIPKSIGGLVSLESLDLSNNSLSG 525 (832)
Q Consensus 484 ~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 525 (832)
+.|++++| .+.+..+..+..+..++...++.|-+.+
T Consensus 362 ------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 362 ------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ----------------------------------------------CCCG
T ss_pred ------ceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 45566666 4555555566677777888888888753
No 378
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=3.1e-19 Score=191.17 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=55.3
Q ss_pred CCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccc-eecccCcccCCccCCcccccccccee
Q 003301 414 LTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVV-IIDLSRNNLSGDIPTAIGGLMNLQDL 492 (832)
Q Consensus 414 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L 492 (832)
+++|+.++|++|.++.+.+.+|.++++|+.++|++| ++...+.+|.++.+|+ .+++.+ +++.+.+.+|.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455555555555555555555555555555555555 4444444555555555 555554 4444445555555555555
Q ss_pred ecccccccccCCccccCCCCCCeec
Q 003301 493 SLRDNGLQGSIPKSIGGLVSLESLD 517 (832)
Q Consensus 493 ~Ls~N~l~~~~p~~~~~l~~L~~L~ 517 (832)
++++|+++...+.+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5555555544445555555555543
No 379
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=163.76 Aligned_cols=112 Identities=28% Similarity=0.360 Sum_probs=76.0
Q ss_pred ccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccC
Q 003301 440 DILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLS 519 (832)
Q Consensus 440 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 519 (832)
+|++|++++|+|+ .+|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4555555555555 345566666666666666666666666667777777777777777776666667777777777777
Q ss_pred CCcccccCchhhhhhccCCeeeCCCCcccccCC
Q 003301 520 NNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 520 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
+|+|++..+..|..+++|+.|+|++|+|.|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 777776655567777777777777777776654
No 380
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.68 E-value=1.2e-17 Score=177.46 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=102.6
Q ss_pred HhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccch--------------hhHHH--------HHHHHHHHhcCCC
Q 003301 657 ATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLE--------------GALKS--------FDVECEVLKSVRH 714 (832)
Q Consensus 657 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--------------~~~~~--------~~~e~~~l~~l~h 714 (832)
...-|.+...||+|++|.||+|...+|+.||||+++.... ..... ..+|...+.++.+
T Consensus 93 rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~ 172 (397)
T 4gyi_A 93 RKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYE 172 (397)
T ss_dssp TTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 3345899999999999999999998899999998753210 00111 2345555655544
Q ss_pred CceeeeceEEecCCeeEEEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC
Q 003301 715 RNLVKIISSCTNNDFKALVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDK 794 (832)
Q Consensus 715 ~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~ 794 (832)
.++....-+... ..++||||++|+++.++... ..+..++.|++.++.|+| +.|||||||||.|||+++
T Consensus 173 ~gv~vp~p~~~~--~~~LVME~i~G~~L~~l~~~-------~~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~ 240 (397)
T 4gyi_A 173 EGFPVPEPIAQS--RHTIVMSLVDALPMRQVSSV-------PDPASLYADLIALILRLA---KHGLIHGDFNEFNILIRE 240 (397)
T ss_dssp TTCSCCCEEEEE--TTEEEEECCSCEEGGGCCCC-------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEE
T ss_pred cCCCCCeeeecc--CceEEEEecCCccHhhhccc-------HHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeC
Confidence 433222112111 23799999999888665321 134568899999999999 999999999999999987
Q ss_pred CC----------cEEEeccccccccCC
Q 003301 795 DM----------VAHLSDFGIAKLLSG 811 (832)
Q Consensus 795 ~~----------~~kl~DFg~a~~~~~ 811 (832)
++ .+.|+||+-|.....
T Consensus 241 dgd~~d~~~~~~~~~iID~~Q~V~~~h 267 (397)
T 4gyi_A 241 EKDAEDPSSITLTPIIIXFPQMVSMDH 267 (397)
T ss_dssp EECSSCTTSEEEEEEECCCTTCEETTS
T ss_pred CCCcccccccccceEEEEeCCcccCCC
Confidence 76 389999998876543
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=3.6e-17 Score=156.54 Aligned_cols=42 Identities=19% Similarity=0.071 Sum_probs=16.6
Q ss_pred ccccccccceeecccccccccCC---ccccCCCCCCeeccCCCcc
Q 003301 482 AIGGLMNLQDLSLRDNGLQGSIP---KSIGGLVSLESLDLSNNSL 523 (832)
Q Consensus 482 ~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l 523 (832)
.+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+
T Consensus 115 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 33344444444444444442222 2334444444444444443
No 382
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=6.2e-16 Score=168.88 Aligned_cols=258 Identities=12% Similarity=0.136 Sum_probs=134.2
Q ss_pred ccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCC
Q 003301 230 SGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGV 309 (832)
Q Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 309 (832)
+.+...+|.++ +|+.+.+.+| ++.+...+|.+ .+|+.+.+.. .++.++.. +|.+|++|+.+++++|.++..
T Consensus 125 ~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~-----aF~~c~~L~~l~l~~n~l~~I 195 (401)
T 4fdw_A 125 KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKED-----IFYYCYNLKKADLSKTKITKL 195 (401)
T ss_dssp CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSS-----TTTTCTTCCEEECTTSCCSEE
T ss_pred CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHH-----HhhCcccCCeeecCCCcceEe
Confidence 33444555543 4666665554 55455555555 3466666653 44443322 356666666666666665533
Q ss_pred CCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcC
Q 003301 310 LPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQ 389 (832)
Q Consensus 310 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 389 (832)
....|. . .+|+.+.+.++ ++.+...+|.++++|+.+++..| +..+...+|.+ .+|+.+++. +.++...+.+|.+
T Consensus 196 ~~~aF~-~-~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~ 269 (401)
T 4fdw_A 196 PASTFV-Y-AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYY 269 (401)
T ss_dssp CTTTTT-T-CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTT
T ss_pred chhhEe-e-cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhC
Confidence 333333 1 24555555422 44444556666666666666653 44445555555 556666663 3344344455555
Q ss_pred CCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceec
Q 003301 390 LARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIID 469 (832)
Q Consensus 390 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 469 (832)
+++|+.+++.+|.+.. +.+..+.+.+|.++++|+.+++. +.++......|.++.+|+.++
T Consensus 270 c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 270 CPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp CTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEE
T ss_pred CCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEE
Confidence 5555555555554430 00012334445555555555554 224444444555555555555
Q ss_pred ccCcccCCccCCccccccccceeecccccccccCCccccCCC-CCCeeccCCCccc
Q 003301 470 LSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLV-SLESLDLSNNSLS 524 (832)
Q Consensus 470 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~ 524 (832)
|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..|.+.
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5333 444555666666 666666666666655556666663 5666666665543
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=8.1e-17 Score=154.06 Aligned_cols=133 Identities=25% Similarity=0.231 Sum_probs=68.1
Q ss_pred CcccEEEeecCccc-ccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEe
Q 003301 343 INLRELGLWGNELI-GSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLS 421 (832)
Q Consensus 343 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 421 (832)
++|++|++++|++. +.+|..+..+++|++|+|++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 34444455555555555555555533 4444455555555555555444444444444444444
Q ss_pred CCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccC---Cccccccccceeeccccc
Q 003301 422 LASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIP---TAIGGLMNLQDLSLRDNG 498 (832)
Q Consensus 422 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~ 498 (832)
+++|.++++.+ +..+..+++|+.|++++|.+++..+ ..|..+++|++|++++|.
T Consensus 102 Ls~N~l~~~~~-----------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDIST-----------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGG-----------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchh-----------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 44444444211 1445555555555555555554333 355566666666666666
Q ss_pred cc
Q 003301 499 LQ 500 (832)
Q Consensus 499 l~ 500 (832)
+.
T Consensus 159 ~~ 160 (168)
T 2ell_A 159 DQ 160 (168)
T ss_dssp SC
T ss_pred hh
Confidence 55
No 384
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=1.3e-16 Score=153.98 Aligned_cols=131 Identities=24% Similarity=0.267 Sum_probs=67.1
Q ss_pred CcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccC
Q 003301 393 LSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSR 472 (832)
Q Consensus 393 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 472 (832)
.+.+++++|+++. +|..+ .++|+.|++++|+++++.+..|..+++|++|++++|++++..+..|..+++|+.|+|++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3556666666663 33322 24566666666666655555555555555555555555544444445555555555555
Q ss_pred cccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCccccc
Q 003301 473 NNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGN 526 (832)
Q Consensus 473 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 526 (832)
|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 555544444444445555555555555433333344444444444444444443
No 385
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=1.6e-15 Score=165.61 Aligned_cols=263 Identities=10% Similarity=0.152 Sum_probs=149.1
Q ss_pred cccceecccccccccccCcccccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEE
Q 003301 167 RNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVL 246 (832)
Q Consensus 167 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 246 (832)
..++.+.+.+ .++.+...+|.+. +|+.+.+..+ +....... |.+ .+|+.+.+.. .++.+.+.+|.++++|+.+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~a--F~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMA--FFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTT--TTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHh--cCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 4555555543 3444555566664 5777776655 43222222 233 3577777764 5666677777777777777
Q ss_pred EcCCCcCcccCCccccCccccceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEe
Q 003301 247 ELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFI 326 (832)
Q Consensus 247 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l 326 (832)
++++|.++.+...+|. ..+|+.+.+..+ ++.++.. +|.+|++|+.+++..| ++.....+|.. .+|+.+.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~-----aF~~~~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i~l 255 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQ-----AFLKTSQLKTIEIPEN-VSTIGQEAFRE--SGITTVKL 255 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTT-----TTTTCTTCCCEECCTT-CCEECTTTTTT--CCCSEEEE
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhh-----HhhCCCCCCEEecCCC-ccCcccccccc--CCccEEEe
Confidence 7777777766666666 467777777643 5554443 4777777777777764 33333344443 25666666
Q ss_pred ecCcccccccccccCcCcccEEEeecCccc-----ccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCC
Q 003301 327 SNCSIRGTIPKEIGNLINLRELGLWGNELI-----GSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGN 401 (832)
Q Consensus 327 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 401 (832)
.+.++.+...+|.++++|+.+++.+|.+. .+.+.+|.++++|+.++|. +.++.....+|.++.+|+.+.+..|
T Consensus 256 -p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 -PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp -ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred -CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 34455455566666666666666665543 3445556666666666665 3344444455555555555555433
Q ss_pred cCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCc-ccceeeecCCc
Q 003301 402 KLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLK-DILSLNFSSNF 450 (832)
Q Consensus 402 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~ 450 (832)
++...+.+|.++ +|+.+++++|.+..+.+..|.+++ +++.|++..+.
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 443444455555 555555555555555555555442 34444444443
No 386
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.66 E-value=4.5e-15 Score=162.89 Aligned_cols=334 Identities=13% Similarity=0.068 Sum_probs=154.2
Q ss_pred ccccCCCCccCCCCccEEECcCCcccccCCCCCcCCCcCceEEecccccccccCccccCccccceecccccccccccCcc
Q 003301 107 LTGPIPNNIWQCKELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLNKLVGFVPTS 186 (832)
Q Consensus 107 l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 186 (832)
++.+-..+|.+|++|+.+.+..+ ++.+...+|.++++|+.+++.++ ++.+....|.++++|+.+.+..+ +..+...+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 34333445666666666666532 54444556666666666666543 44344455666666665555433 33333444
Q ss_pred cccCCcccEEEecCCCCCCCCCccccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccc
Q 003301 187 IFNLSAMKTLALPSNALSGSLPSSIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRK 266 (832)
Q Consensus 187 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 266 (832)
|.++..++...... +..+...+|.++++|+.+.+.++. ..+...+|.++.+
T Consensus 136 F~~~~~~~~~~~~~----------------------------~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~ 186 (394)
T 4fs7_A 136 FKGCDFKEITIPEG----------------------------VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGK 186 (394)
T ss_dssp TTTCCCSEEECCTT----------------------------CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTT
T ss_pred eecccccccccCcc----------------------------ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCC
Confidence 44443222211111 111223345555555555554432 2244455555555
Q ss_pred cceeecccccCCCCCCccccccccccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCccc
Q 003301 267 LEWLRLSYNFLTSSTSELSFLSSWANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLR 346 (832)
Q Consensus 267 L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 346 (832)
|+.+.+..| ++.+.. .+|.++..|+.+.+..+... +.+...... .|+.+.+... ++.+....|.++..|+
T Consensus 187 L~~i~l~~~-~~~I~~-----~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~-~l~~i~ip~~-~~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRD-----YCFAECILLENMEFPNSLYY--LGDFALSKT-GVKNIIIPDS-FTELGKSVFYGCTDLE 256 (394)
T ss_dssp CCBCCCCTT-CCEECT-----TTTTTCTTCCBCCCCTTCCE--ECTTTTTTC-CCCEEEECTT-CCEECSSTTTTCSSCC
T ss_pred ceEEEcCCC-ceEeCc-----hhhccccccceeecCCCceE--eehhhcccC-CCceEEECCC-ceecccccccccccce
Confidence 555555544 332222 13555555655555444321 111111111 3444443321 2223334455556666
Q ss_pred EEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCc
Q 003301 347 ELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNE 426 (832)
Q Consensus 347 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 426 (832)
.+.+..+... +....|..+..++.+....+.+. ...|..+.+|+.+.+..+ ++.....+|.++++|+.+++.++
T Consensus 257 ~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 257 SISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp EEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred eEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-
Confidence 6666555332 44455555555555555544322 123444455555555433 33233344555555555554322
Q ss_pred CCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCcc
Q 003301 427 LNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKS 506 (832)
Q Consensus 427 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 506 (832)
++.+... +|.++.+|+.+++..| ++.+...+|.++.+|+.+++..+ ++ .+..+
T Consensus 331 v~~I~~~------------------------aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~ 383 (394)
T 4fs7_A 331 VEEIGKR------------------------SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYD 383 (394)
T ss_dssp CCEECTT------------------------TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGG
T ss_pred ccEEhHH------------------------hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhhe
Confidence 3333344 4444455555555443 44344455555555665555443 22 23345
Q ss_pred ccCCCCCCe
Q 003301 507 IGGLVSLES 515 (832)
Q Consensus 507 ~~~l~~L~~ 515 (832)
|.++++|+.
T Consensus 384 F~~c~~L~~ 392 (394)
T 4fs7_A 384 FEDTTKFKW 392 (394)
T ss_dssp BCTTCEEEE
T ss_pred ecCCCCCcE
Confidence 555555554
No 387
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=7.4e-17 Score=150.94 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=48.9
Q ss_pred CCCcEEEecCCcCC-CCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceec
Q 003301 391 ARLSVLYMDGNKLS-GPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIID 469 (832)
Q Consensus 391 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 469 (832)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..|..+++|++|++++|++++.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 34444455555555555555555443 3344444444444444444433344444444444444
Q ss_pred ccCcccCCc-cCCccccccccceeeccccccc
Q 003301 470 LSRNNLSGD-IPTAIGGLMNLQDLSLRDNGLQ 500 (832)
Q Consensus 470 Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~ 500 (832)
+++|++++. .+..++++++|++|++++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 444444431 1233444444444444444444
No 388
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=8.6e-17 Score=150.49 Aligned_cols=129 Identities=20% Similarity=0.182 Sum_probs=117.7
Q ss_pred CCCCCeEeCCCCcCC-CCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCcccccccccee
Q 003301 414 LTSLRLLSLASNELN-SVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDL 492 (832)
Q Consensus 414 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 492 (832)
.++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..++.+++|++|+|++|++++.+|..+.++++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 478999999999998 67888999999999999999999976 789999999999999999998788888899999999
Q ss_pred eccccccccc-CCccccCCCCCCeeccCCCcccccCc---hhhhhhccCCeeeCCC
Q 003301 493 SLRDNGLQGS-IPKSIGGLVSLESLDLSNNSLSGNIP---TSMEKLLYLKDLNLSF 544 (832)
Q Consensus 493 ~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~l~l~~ 544 (832)
++++|++++. .|..++.+++|+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999974 35889999999999999999998776 6899999999999874
No 389
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=4.9e-16 Score=149.98 Aligned_cols=134 Identities=23% Similarity=0.208 Sum_probs=100.5
Q ss_pred CCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeeccc
Q 003301 417 LRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRD 496 (832)
Q Consensus 417 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 496 (832)
.+.+++++|.++.+.... .++|++|++++|++++..+..|+.+++|++|++++|++++..+..|.++++|+.|+|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467777888777644322 25777888888888776666677788888888888888766666777888888888888
Q ss_pred ccccccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCCC
Q 003301 497 NGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 497 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 888876666777788888888888888766666667778888888888888877763
No 390
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=152.01 Aligned_cols=110 Identities=24% Similarity=0.318 Sum_probs=71.7
Q ss_pred CCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecc
Q 003301 416 SLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLR 495 (832)
Q Consensus 416 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 495 (832)
+|+.|++++|.|+. +|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus 32 ~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 45555555555543 33455555555555555555555555556666666666666666666666677777777777777
Q ss_pred cccccccCCccccCCCCCCeeccCCCccccc
Q 003301 496 DNGLQGSIPKSIGGLVSLESLDLSNNSLSGN 526 (832)
Q Consensus 496 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 526 (832)
+|+|++..+..|..+++|+.|+|++|++...
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 7777765556677788888888888887753
No 391
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=9e-15 Score=160.52 Aligned_cols=336 Identities=12% Similarity=0.100 Sum_probs=218.9
Q ss_pred cccccCCCCCcCCCcCceEEecccccccccCccccCccccceecccccccccccCcccccCCcccEEEecCCCCCCCCCc
Q 003301 130 QFTERIPRGLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSNALSGSLPS 209 (832)
Q Consensus 130 ~i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 209 (832)
.++.+...+|.++++|+.+.+..+ ++.+-..+|.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-------- 127 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-------- 127 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--------
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--------
Confidence 355555667888888888888643 66455667777777777777654 55455566767766666554432
Q ss_pred cccccCCCCccEEEccCCccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeecccccCCCCCCccccccc
Q 003301 210 SIDLVRLPNLEIISLAGNNFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLTSSTSELSFLSS 289 (832)
Q Consensus 210 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 289 (832)
+..+...+|.++..+...... .+..+...+|.++++|+.+.+..+. ..++. .+
T Consensus 128 -------------------l~~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~-----~~ 180 (394)
T 4fs7_A 128 -------------------LKSIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHN-----GL 180 (394)
T ss_dssp -------------------CCEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECT-----TT
T ss_pred -------------------eeeecceeeecccccccccCc--cccccchhhhcccCCCcEEecCCcc-ceecc-----cc
Confidence 222344455555444433322 2333566789999999999997653 33333 35
Q ss_pred cccCCCCcEEeccCCCCCCCCCCcccccccccceEEeecCcccccccccccCcCcccEEEeecCcccccccccccCCCCC
Q 003301 290 WANCKNLKLLDLSNNPINGVLPSSIGNLSLSLSRIFISNCSIRGTIPKEIGNLINLRELGLWGNELIGSIPITFGKLQNL 369 (832)
Q Consensus 290 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 369 (832)
|.++++|+.+++..| +... ...+|.++..|+.+.+..+... +.+.+....+|
T Consensus 181 F~~c~~L~~i~l~~~-~~~I-------------------------~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l 232 (394)
T 4fs7_A 181 FSGCGKLKSIKLPRN-LKII-------------------------RDYCFAECILLENMEFPNSLYY--LGDFALSKTGV 232 (394)
T ss_dssp TTTCTTCCBCCCCTT-CCEE-------------------------CTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCC
T ss_pred ccCCCCceEEEcCCC-ceEe-------------------------CchhhccccccceeecCCCceE--eehhhcccCCC
Confidence 889999999888765 3212 2233445555555555444322 12223334566
Q ss_pred ceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCC
Q 003301 370 QGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSN 449 (832)
Q Consensus 370 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 449 (832)
+.+.+..+. +......+.....|+.+.+..+... .....|..+..++.+....+.+ ....|..+.+|+.+.+..+
T Consensus 233 ~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 233 KNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT
T ss_pred ceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc
Confidence 666665432 2233445666667777777666443 4556677777777777666543 3456777788888887655
Q ss_pred cccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCcccccCch
Q 003301 450 FLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNSLSGNIPT 529 (832)
Q Consensus 450 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 529 (832)
++.....+|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..| ++.....+|.++.+|+.+++..+ ++ .+..
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~ 382 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRY 382 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhh
Confidence 55556677888888998888754 77677889999999999999887 77677889999999999999866 33 3456
Q ss_pred hhhhhccCCee
Q 003301 530 SMEKLLYLKDL 540 (832)
Q Consensus 530 ~~~~l~~L~~l 540 (832)
.|.+.++|+.+
T Consensus 383 ~F~~c~~L~~I 393 (394)
T 4fs7_A 383 DFEDTTKFKWI 393 (394)
T ss_dssp GBCTTCEEEEE
T ss_pred eecCCCCCcEE
Confidence 77777777654
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=6.2e-16 Score=149.05 Aligned_cols=123 Identities=20% Similarity=0.276 Sum_probs=70.1
Q ss_pred CccCCCCcceeccCccccCccccCeEeccCCccccCCCccccccc-cCcEEEccCCcCCCCCCCcccCcccccccccccc
Q 003301 1 MLSLSFNDLSGAIPKEIGNLTMLKKLGLGYNKLRGEIPQELGNLA-ELELVSLTNNFLSGTIPSTIFNLSSLSTGMDFSN 79 (832)
Q Consensus 1 ~ldl~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~l~~~L~ls~ 79 (832)
|+.++.+.+. -.+.+.+.+.|++|++++|+++ .+|. +..+. +|++|++++|.+++ + +.++.+++| ++|++++
T Consensus 1 m~~lt~~~i~--~~~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L-~~L~Ls~ 73 (176)
T 1a9n_A 1 MVKLTAELIE--QAAQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRL-KTLLVNN 73 (176)
T ss_dssp -CCCCHHHHH--TSCEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSC-CEEECCS
T ss_pred CccccHHHHH--HHHhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCC-CEEECCC
Confidence 4455555454 2455677778888888888887 5554 44444 78888888887773 3 445555555 5566666
Q ss_pred cccccCCChhhhhcCCCceEEEccCCcccccCCC--CccCCCCccEEECcCCccc
Q 003301 80 NSLTGSLPDDMCRRLPLIKGLYMSNNKLTGPIPN--NIWQCKELIVISLAYNQFT 132 (832)
Q Consensus 80 n~l~~~lp~~~~~~l~~L~~L~l~~N~l~~~~p~--~l~~l~~L~~L~Ls~n~i~ 132 (832)
|.++ .+|..++..+++|++|++++|+|+ .+|. .+..+++|++|++++|.++
T Consensus 74 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 74 NRIC-RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp SCCC-EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred Cccc-ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 6655 445444445555555555555554 3333 3444444444444444443
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=1.2e-15 Score=146.95 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=61.0
Q ss_pred ccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCc--cccCCCCCCeec
Q 003301 440 DILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPK--SIGGLVSLESLD 517 (832)
Q Consensus 440 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~ 517 (832)
+|++|++++|++++. ..++.+++|++|+|++|++++..+..|.++++|++|+|++|+|+ .+|. .++.+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444455544432 34555555666666666665443344466666666666666664 3444 566666667777
Q ss_pred cCCCcccccCch----hhhhhccCCeeeCCCCccc
Q 003301 518 LSNNSLSGNIPT----SMEKLLYLKDLNLSFNKLE 548 (832)
Q Consensus 518 Ls~N~l~~~~p~----~~~~l~~L~~l~l~~N~l~ 548 (832)
+++|+++. +|. .+..+++|+.||+++|...
T Consensus 120 l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77776663 344 3666677777777776655
No 394
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=1.6e-17 Score=163.71 Aligned_cols=161 Identities=19% Similarity=0.312 Sum_probs=103.7
Q ss_pred ccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccc
Q 003301 363 FGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDIL 442 (832)
Q Consensus 363 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 442 (832)
+.....++.++++.|.+++..|. ++ .+|..|..+++|++|++++|.+++ +| .+..+++|+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~ 73 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLR 73 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCC
T ss_pred HHhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCC
Confidence 44455666666666666655443 11 122355555666666666666655 33 556666666
Q ss_pred eeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCC-ccccCCCCCCeeccCCC
Q 003301 443 SLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIP-KSIGGLVSLESLDLSNN 521 (832)
Q Consensus 443 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N 521 (832)
+|++++|+++ .+|..+..+++|+.|+|++|++++ +| .+.++++|+.|+|++|++++..+ ..+..+++|+.|++++|
T Consensus 74 ~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 74 ILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 6666666666 355666666777777777777775 34 57777778888888888774332 46777888888888888
Q ss_pred cccccCchh----------hhhhccCCeeeCCCCccc
Q 003301 522 SLSGNIPTS----------MEKLLYLKDLNLSFNKLE 548 (832)
Q Consensus 522 ~l~~~~p~~----------~~~l~~L~~l~l~~N~l~ 548 (832)
++++.+|.. +..+++|+.|| +|+++
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 887766653 67788888776 56554
No 395
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=2.2e-17 Score=162.63 Aligned_cols=162 Identities=23% Similarity=0.252 Sum_probs=102.3
Q ss_pred ccCcCcccEEEeecCcccccccccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCC
Q 003301 339 IGNLINLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLR 418 (832)
Q Consensus 339 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 418 (832)
+.....++.++++.+.+.+..|. ++ .+|..+..+++|++|++++|++++ +| .+..+++|+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~ 73 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLR 73 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCC
T ss_pred HHhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCC
Confidence 45556777777888777765554 22 233344444444444554444443 33 444555555
Q ss_pred eEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccC-Cccccccccceeecccc
Q 003301 419 LLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIP-TAIGGLMNLQDLSLRDN 497 (832)
Q Consensus 419 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N 497 (832)
.|++++|.++. +|..+..+++|++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|
T Consensus 74 ~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 74 ILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 55555555553 34455555666666777777665 34 56777778888888888775332 46778888888888888
Q ss_pred cccccCCcc----------ccCCCCCCeeccCCCcccc
Q 003301 498 GLQGSIPKS----------IGGLVSLESLDLSNNSLSG 525 (832)
Q Consensus 498 ~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~~ 525 (832)
++++.+|.. +..+++|+.|| +|.++.
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 887766553 77888899887 777764
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=7.4e-15 Score=140.36 Aligned_cols=108 Identities=21% Similarity=0.244 Sum_probs=64.9
Q ss_pred ceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCC
Q 003301 442 LSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNN 521 (832)
Q Consensus 442 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 521 (832)
+.+++++|+++. +|..+. +.|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 344555555543 333332 45566666666666555666666666666666666666555555666666666666666
Q ss_pred cccccCchhhhhhccCCeeeCCCCcccccCC
Q 003301 522 SLSGNIPTSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 522 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
+|++..+..|..+++|+.|+|++|+|+|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 6665555556666666666666666666655
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=2.2e-14 Score=137.53 Aligned_cols=107 Identities=25% Similarity=0.253 Sum_probs=58.6
Q ss_pred eeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCCCc
Q 003301 443 SLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSNNS 522 (832)
Q Consensus 443 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 522 (832)
.+++++|+++ .+|..+. +.|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|+.+++|++|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3444444443 2333332 455555555555555555555555566666666666655444445556666666666666
Q ss_pred ccccCchhhhhhccCCeeeCCCCcccccCC
Q 003301 523 LSGNIPTSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 523 l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
|++..+..+..+++|+.|+|++|+|.+.++
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 665444445556666666666666665544
No 398
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=1.5e-12 Score=142.75 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=52.1
Q ss_pred CCCccCCC-CccEEECcCCcccccCCCCCcCCCcCceEEecccc---cccccCccccCccccceecccccccccccCccc
Q 003301 112 PNNIWQCK-ELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNN---LTGEIPYEMGNLRNLEILGLQLNKLVGFVPTSI 187 (832)
Q Consensus 112 p~~l~~l~-~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~---i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 187 (832)
..+|.++. .|+.+.+..+ ++.+...+|.++++|+.+.++.|. ++.+-..+|.++.+|+.+.+..+ ++.+...+|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34555553 4666666543 555556667777777777776653 44344456666677776666543 444445566
Q ss_pred ccCCcccEEEecCC
Q 003301 188 FNLSAMKTLALPSN 201 (832)
Q Consensus 188 ~~l~~L~~L~L~~n 201 (832)
.++.+|+.+.+..+
T Consensus 134 ~~c~~L~~i~lp~~ 147 (394)
T 4gt6_A 134 HHCEELDTVTIPEG 147 (394)
T ss_dssp TTCTTCCEEECCTT
T ss_pred hhhcccccccccce
Confidence 66666666666543
No 399
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.1e-13 Score=132.10 Aligned_cols=108 Identities=24% Similarity=0.239 Sum_probs=74.4
Q ss_pred CeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccccccceeecccc
Q 003301 418 RLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDN 497 (832)
Q Consensus 418 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 497 (832)
+.+++++|.++.+ |..+ .++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4555555555542 2222 145566666666666666666777777777777777777666667777888888888888
Q ss_pred cccccCCccccCCCCCCeeccCCCcccccCc
Q 003301 498 GLQGSIPKSIGGLVSLESLDLSNNSLSGNIP 528 (832)
Q Consensus 498 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 528 (832)
+|++..+..|..+++|+.|+|++|+++...+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 8887666678888888888888888876544
No 400
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=2.2e-13 Score=130.49 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=16.8
Q ss_pred ccccccceecccCcccCCccCCccccccccceeeccccccc
Q 003301 460 GNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRDNGLQ 500 (832)
Q Consensus 460 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 500 (832)
..+++|++|+|++|+|++..+..|.++++|+.|+|++|++.
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 33334444444444444333333444444444444444444
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=9.5e-12 Score=136.33 Aligned_cols=114 Identities=11% Similarity=0.148 Sum_probs=88.5
Q ss_pred CCChhhhhcCC-CceEEEccCCcccccCCCCccCCCCccEEECcCCc---ccccCCCCCcCCCcCceEEecccccccccC
Q 003301 85 SLPDDMCRRLP-LIKGLYMSNNKLTGPIPNNIWQCKELIVISLAYNQ---FTERIPRGLGNLTSLKTLYLGFNNLTGEIP 160 (832)
Q Consensus 85 ~lp~~~~~~l~-~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~n~---i~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p 160 (832)
.|.+..|.+.. .|+.+.+..+ ++.+-..+|.+|++|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++....
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 56777776664 5888888765 665667789999999999998774 66666778999999999888765 554666
Q ss_pred ccccCccccceecccccccccccCcccccCCcccEEEecCC
Q 003301 161 YEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALPSN 201 (832)
Q Consensus 161 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n 201 (832)
..|.++.+|+.+.+..+ +..+...+|.++.+|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce
Confidence 78899999999999754 44466677888888888888655
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=6.1e-15 Score=159.46 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=35.4
Q ss_pred ccccccceecccCcccCCc----cCCccccccccceeeccccccccc----CCccccCCCCCCeeccCCCcccccCchhh
Q 003301 460 GNLKVVVIIDLSRNNLSGD----IPTAIGGLMNLQDLSLRDNGLQGS----IPKSIGGLVSLESLDLSNNSLSGNIPTSM 531 (832)
Q Consensus 460 ~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 531 (832)
...+.|++|||++|.|++. ++..+...++|+.|+|++|.|++. ++..+...++|++|||++|.|+..-...+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3344455555555555431 133344445555555555555532 22233344556666666666654443333
Q ss_pred h
Q 003301 532 E 532 (832)
Q Consensus 532 ~ 532 (832)
.
T Consensus 260 ~ 260 (372)
T 3un9_A 260 R 260 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 403
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.34 E-value=2.6e-12 Score=132.50 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=116.0
Q ss_pred HHHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCC-CCceeeeceEEecCCeeEEE
Q 003301 655 LQATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVR-HRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 655 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv 733 (832)
....+.|++....+.|+.+.||++.. .++.+++|+...........+.+|+++++.+. +..++++++++...+..|+|
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv 88 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL 88 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence 34557898888999999999999986 47899999987543233356888999998884 67788999999988899999
Q ss_pred EecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcC--------------------------------------
Q 003301 734 LEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFG-------------------------------------- 775 (832)
Q Consensus 734 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-------------------------------------- 775 (832)
|||++|.++.+.+.. ......++.+++.+++.||.-
T Consensus 89 ~e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (263)
T 3tm0_A 89 MSEADGVLCSEEYED------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT 162 (263)
T ss_dssp EECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTC
T ss_pred EEecCCeehhhccCC------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccc
Confidence 999999999876321 122346788999999999940
Q ss_pred ------------------CCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 776 ------------------YSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 776 ------------------~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
....++|+|++|.||+++.+..+.|+||+.|..
T Consensus 163 ~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 163 PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp SSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred cCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 015689999999999998766678999998864
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=5.4e-13 Score=143.75 Aligned_cols=132 Identities=20% Similarity=0.140 Sum_probs=90.7
Q ss_pred eEeCCCC-cCCCCCCcccccCcccceeeecC-CcccCCCccccccccccceecccCcccCCccCCccccccccceeeccc
Q 003301 419 LLSLASN-ELNSVIPSTFWNLKDILSLNFSS-NFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGLMNLQDLSLRD 496 (832)
Q Consensus 419 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 496 (832)
.++++++ .+++ +|. +..+++|++|+|++ |+|++..+..|+.+++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 7776 455 77777888888875 888777667788888888888888888877777778888888888888
Q ss_pred ccccccCCccccCCCCCCeeccCCCcccccCc-hhhhhhccCCeeeCCCCcccccCCC
Q 003301 497 NGLQGSIPKSIGGLVSLESLDLSNNSLSGNIP-TSMEKLLYLKDLNLSFNKLEGEIPR 553 (832)
Q Consensus 497 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~p~ 553 (832)
|+|++..+..|..++ |+.|+|++|++..... .++..........+..++++|.-|.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 888765556666555 7788888887775433 2333333333444455566665554
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=2e-12 Score=139.30 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=64.3
Q ss_pred eeeecCC-cccCCCccccccccccceecccC-cccCCccCCccccccccceeecccccccccCCccccCCCCCCeeccCC
Q 003301 443 SLNFSSN-FLNGSLPEDIGNLKVVVIIDLSR-NNLSGDIPTAIGGLMNLQDLSLRDNGLQGSIPKSIGGLVSLESLDLSN 520 (832)
Q Consensus 443 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 520 (832)
.++++++ +|++ +|. +..+++|+.|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|+.+++|+.|||++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 5653 454 66666666666664 666655555666666666666666666666666666666666666666
Q ss_pred CcccccCchhhhhhccCCeeeCCCCcccccCC
Q 003301 521 NSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 521 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
|+|++..+..+..+. |+.|+|++|+|.|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 666655544444444 6666666666665543
No 406
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=1.6e-14 Score=156.22 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=49.2
Q ss_pred CcCceEEeccccccc----ccCccccCccccceecccccccccc----cCcccccCCcccEEEecCCCCCCCCCccc--c
Q 003301 143 TSLKTLYLGFNNLTG----EIPYEMGNLRNLEILGLQLNKLVGF----VPTSIFNLSAMKTLALPSNALSGSLPSSI--D 212 (832)
Q Consensus 143 ~~L~~L~Ls~N~i~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~~--~ 212 (832)
++|++|+|++|.|+. .++..+..+++|++|+|++|+++.. ++.++...++|++|+|++|.++......+ .
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 445555555555432 1222334444555555555554421 13334445556666666665542211111 0
Q ss_pred ccCCCCccEEEccCCccccccCCcccCC---C--CccEEE--cCCCcCc
Q 003301 213 LVRLPNLEIISLAGNNFSGIIPSFIFNA---S--KLSVLE--LGENSFS 254 (832)
Q Consensus 213 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l---~--~L~~L~--L~~N~i~ 254 (832)
+...++|++|+|++|.|+......+..+ . .|+.+. +..|.++
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 1234566666666666654433333322 1 166666 6666554
No 407
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=1.2e-09 Score=119.07 Aligned_cols=59 Identities=3% Similarity=-0.016 Sum_probs=30.7
Q ss_pred CCcCCCcCceEEecccccccccCccccCccccceecccccccccccCcccccCCcccEEEec
Q 003301 138 GLGNLTSLKTLYLGFNNLTGEIPYEMGNLRNLEILGLQLNKLVGFVPTSIFNLSAMKTLALP 199 (832)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 199 (832)
++....+|+.+.+.. .++.+-..+|.++++|+.+.+..+ ++.+...+|.++ +|+.+.+.
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~ 99 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGM 99 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEEC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECC
Confidence 444455666666643 344344455666666666666433 444444555554 45555443
No 408
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.18 E-value=2.5e-11 Score=124.98 Aligned_cols=139 Identities=16% Similarity=0.078 Sum_probs=102.2
Q ss_pred cCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCc--eeeeceEEecCCeeEEEEec
Q 003301 659 NQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRN--LVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 659 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~ 736 (832)
..+.+....+.|..+.||++...+|+.|++|+.... ....+.+|+++++.+.+.+ +++++++...++..|+||||
T Consensus 20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~ 96 (264)
T 1nd4_A 20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGE 96 (264)
T ss_dssp TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEEC
T ss_pred CCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEe
Confidence 345544333466679999998767888999987643 2245778999998885444 56788888887888999999
Q ss_pred CCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCC----------------------------------------
Q 003301 737 MPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGY---------------------------------------- 776 (832)
Q Consensus 737 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~---------------------------------------- 776 (832)
++|.++. .. ..+ ...++.+++..+..+|...
T Consensus 97 i~G~~l~--~~----~~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (264)
T 1nd4_A 97 VPGQDLL--SS----HLA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAP 167 (264)
T ss_dssp CSSEETT--TS----CCC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCH
T ss_pred cCCcccC--cC----cCC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccH
Confidence 9998884 21 112 2356778888888888311
Q ss_pred ---------------CCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 777 ---------------SNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 777 ---------------~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
..+++|+|++|.||+++.++.++|+|||.|...
T Consensus 168 ~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g 215 (264)
T 1nd4_A 168 AELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVA 215 (264)
T ss_dssp HHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccC
Confidence 123999999999999987767789999998753
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=3.8e-09 Score=114.97 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=55.8
Q ss_pred cccccCCCCCceEEccCCccCCCCchhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCc
Q 003301 360 PITFGKLQNLQGLDLVNNKLEGPIPNGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLK 439 (832)
Q Consensus 360 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 439 (832)
..+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|.++++|+.+.+.++.++.+...+|.++.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 334444444444444433 22223334444444444444322 2223333445555555555555545444445555555
Q ss_pred ccceeeecCCcccCCCccccccccccceecccCcccCCccCCccccc
Q 003301 440 DILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAIGGL 486 (832)
Q Consensus 440 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 486 (832)
+|+.++|..+ ++.....+|.++.+|+.+.+..+ ++.+...+|.+.
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 5555555432 33333445555555555555433 443444555554
No 410
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=99.02 E-value=5.8e-10 Score=120.43 Aligned_cols=142 Identities=13% Similarity=0.176 Sum_probs=106.1
Q ss_pred CCCeeeccCCceEEEEEecCCcEEEEEEEe--ccc-hhhHHHHHHHHHHHhcCC--CCceeeeceEEecC---CeeEEEE
Q 003301 663 ASNLIGTGGFGSVYKGSFLDGMEVAIKVFH--LQL-EGALKSFDVECEVLKSVR--HRNLVKIISSCTNN---DFKALVL 734 (832)
Q Consensus 663 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~ 734 (832)
..+.++.|.++.||+++.. +..+++|+.. ... ......+.+|.++++.+. +..+++++.++.+. +..|+||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 3567899999999999874 5688888765 322 122356788999999886 45588889888766 4589999
Q ss_pred ecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcC---------------------------------------
Q 003301 735 EYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFG--------------------------------------- 775 (832)
Q Consensus 735 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~--------------------------------------- 775 (832)
||++|..+.+.. ...++...+..++.+++.+|+.||..
T Consensus 121 e~v~G~~l~~~~---~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (359)
T 3dxp_A 121 EFVSGRVLWDQS---LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAM 197 (359)
T ss_dssp ECCCCBCCCCTT---CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHH
T ss_pred EecCCeecCCCc---cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHH
Confidence 999987774421 12367888889999999999999941
Q ss_pred ----------------CCCCeEecCCCCCCeEeCCCCc--EEEeccccccc
Q 003301 776 ----------------YSNPVVHCDIKPSNVLLDKDMV--AHLSDFGIAKL 808 (832)
Q Consensus 776 ----------------~~~~ivH~Dlkp~NIl~~~~~~--~kl~DFg~a~~ 808 (832)
...+++|||++|.||+++.++. +.|+||+.|..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 198 DSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 0257999999999999987753 69999999875
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=2.7e-10 Score=121.84 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=81.4
Q ss_pred hhhcCCCCCcEEEecCCcCCCCCcccCCCCCCCCeEeCCCCcCCCCCCcccc--cCcccceeeecC--CcccCC-----C
Q 003301 385 NGLCQLARLSVLYMDGNKLSGPIPPCIGDLTSLRLLSLASNELNSVIPSTFW--NLKDILSLNFSS--NFLNGS-----L 455 (832)
Q Consensus 385 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~--N~l~~~-----~ 455 (832)
..+..+++|+.|+|++|.-. .++. +. +++|+.|++..|.+.......+. .+++|++|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34455556666666555211 1222 22 55666666666555432222222 455666666542 111110 0
Q ss_pred cccc--ccccccceecccCcccCCccCCccc---cccccceeeccccccccc----CCccccCCCCCCeeccCCCccccc
Q 003301 456 PEDI--GNLKVVVIIDLSRNNLSGDIPTAIG---GLMNLQDLSLRDNGLQGS----IPKSIGGLVSLESLDLSNNSLSGN 526 (832)
Q Consensus 456 ~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ 526 (832)
...+ ..+++|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|+|++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 0111 2356777777777776543333332 367777777777777653 233344567788888888777644
Q ss_pred CchhhhhhccCCeeeCCCCc
Q 003301 527 IPTSMEKLLYLKDLNLSFNK 546 (832)
Q Consensus 527 ~p~~~~~l~~L~~l~l~~N~ 546 (832)
.-..+...- ...+++++|+
T Consensus 323 ~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC-CSEEECCSBC
T ss_pred HHHHHHHHc-CCEEEecCCc
Confidence 333333311 2456777665
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=6.4e-10 Score=118.94 Aligned_cols=140 Identities=24% Similarity=0.237 Sum_probs=100.5
Q ss_pred CcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecCCcccCCCccccc--cccccceecccC--cccCCc----
Q 003301 407 IPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSSNFLNGSLPEDIG--NLKVVVIIDLSR--NNLSGD---- 478 (832)
Q Consensus 407 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~--N~l~~~---- 478 (832)
+...+..+++|+.|+|++|.-.. .+. +. +++|+.|+|..+.+.......+. .+++|+.|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 44556778999999999884222 222 33 78999999999988654334443 689999999864 332211
Q ss_pred -cCCcc--ccccccceeecccccccccCCcccc---CCCCCCeeccCCCccccc----CchhhhhhccCCeeeCCCCccc
Q 003301 479 -IPTAI--GGLMNLQDLSLRDNGLQGSIPKSIG---GLVSLESLDLSNNSLSGN----IPTSMEKLLYLKDLNLSFNKLE 548 (832)
Q Consensus 479 -~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~ 548 (832)
+...+ ..+++|+.|+|++|.+.+..+..+. .+++|++|||+.|.+++. ++..+..+++|+.|+|++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11223 2478999999999999864443332 578999999999999874 4445567899999999999887
Q ss_pred c
Q 003301 549 G 549 (832)
Q Consensus 549 ~ 549 (832)
.
T Consensus 321 d 321 (362)
T 2ra8_A 321 D 321 (362)
T ss_dssp H
T ss_pred H
Confidence 4
No 413
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.67 E-value=8.1e-08 Score=101.59 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=102.0
Q ss_pred CCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCC----CceeeeceEEecCCeeEEEEe
Q 003301 660 QFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRH----RNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 660 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h----~niv~l~~~~~~~~~~~lv~e 735 (832)
.+...+.++.|....||++ ++.+++|+.... .....+.+|.++++.+.+ ..+++++++ +..|+|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 5666788999999999998 678899976433 223568889998888865 234555555 56689999
Q ss_pred cCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCC---------------------------------------
Q 003301 736 YMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGY--------------------------------------- 776 (832)
Q Consensus 736 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~--------------------------------------- 776 (832)
|++|.++.+.... .++..+...++.+++..++.||...
T Consensus 108 ~i~G~~l~~~~~~---~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
T 3r70_A 108 YIKGERITYEQYH---KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDE 184 (320)
T ss_dssp CCCCBCCCHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ecCCccccccccc---cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 9999888643321 3566677778888888888888211
Q ss_pred ---------------------CCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 777 ---------------------SNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 777 ---------------------~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
...++|+|++|.||+++.++.+.|+||+.|...
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 185 MLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred chHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 234599999999999998767799999998754
No 414
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=1.1e-08 Score=103.59 Aligned_cols=105 Identities=24% Similarity=0.292 Sum_probs=64.9
Q ss_pred cccCcccce--eeecCCccc---CCCccccccccccceecccCcccCC--ccCCccccccccceeecccccccccCCccc
Q 003301 435 FWNLKDILS--LNFSSNFLN---GSLPEDIGNLKVVVIIDLSRNNLSG--DIPTAIGGLMNLQDLSLRDNGLQGSIPKSI 507 (832)
Q Consensus 435 ~~~l~~L~~--L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 507 (832)
|...+.|.. ++++.|+.. +.++-...+++.|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 333444444 556666433 1111122456777777777777776 3456667777888888888888754 233
Q ss_pred cCCC--CCCeeccCCCcccccCch-------hhhhhccCCeee
Q 003301 508 GGLV--SLESLDLSNNSLSGNIPT-------SMEKLLYLKDLN 541 (832)
Q Consensus 508 ~~l~--~L~~L~Ls~N~l~~~~p~-------~~~~l~~L~~l~ 541 (832)
..+. +|+.|+|++|++++.+|. .+..+++|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3333 788888888888776652 356677777764
No 415
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.56 E-value=1.1e-07 Score=99.80 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=100.2
Q ss_pred CCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCC-CCc--eeeeceEEecCC---eeEEEEecC
Q 003301 664 SNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVR-HRN--LVKIISSCTNND---FKALVLEYM 737 (832)
Q Consensus 664 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~~ 737 (832)
.+.++.|....||++. ..+++|+.... .....+.+|.++++.+. +.. +++.+......+ ..|+|||++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4668999999999863 57899986533 33467889999998873 332 455555544333 358999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcC------------------------------------------
Q 003301 738 PNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFG------------------------------------------ 775 (832)
Q Consensus 738 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~------------------------------------------ 775 (832)
+|.++.+.... .++..++..++.+++..++.||..
T Consensus 99 ~G~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 99 KGVPLTPLLLN---NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp CCEECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCeECCccccc---cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 99888654332 367777788888888888888830
Q ss_pred -------------CCCCeEecCCCCCCeEeCC--CCcEEEecccccccc
Q 003301 776 -------------YSNPVVHCDIKPSNVLLDK--DMVAHLSDFGIAKLL 809 (832)
Q Consensus 776 -------------~~~~ivH~Dlkp~NIl~~~--~~~~kl~DFg~a~~~ 809 (832)
....++|+|++|.||++++ ...+.++||+.+...
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~ 224 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS 224 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence 1145899999999999988 556899999998754
No 416
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.46 E-value=7.8e-07 Score=93.25 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=96.2
Q ss_pred CCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCC---ceeeeceEEe-cCCeeEEEEecCCC
Q 003301 664 SNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHR---NLVKIISSCT-NNDFKALVLEYMPN 739 (832)
Q Consensus 664 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~ 739 (832)
.+.++.|....||+. +..+++|+... ......+.+|.++++.+.+. .+++.+.++. ..+..|+||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 456888998999987 67789998532 23346788999999998642 3667777764 45667899999999
Q ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcC--------------------------------------------
Q 003301 740 GSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFG-------------------------------------------- 775 (832)
Q Consensus 740 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-------------------------------------------- 775 (832)
.++.+.... .++..+...++.+++..++.||..
T Consensus 98 ~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 98 QILGEDGMA---VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp EECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred eECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 888763221 234444555555555555555521
Q ss_pred -------------CCCCeEecCCCCCCeEeCC---CCc-EEEecccccccc
Q 003301 776 -------------YSNPVVHCDIKPSNVLLDK---DMV-AHLSDFGIAKLL 809 (832)
Q Consensus 776 -------------~~~~ivH~Dlkp~NIl~~~---~~~-~kl~DFg~a~~~ 809 (832)
....++|+|++|.||+++. ++. +.|+||+.+..-
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g 225 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS 225 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence 2346799999999999987 455 589999988754
No 417
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.42 E-value=1.9e-06 Score=88.70 Aligned_cols=137 Identities=18% Similarity=0.086 Sum_probs=98.7
Q ss_pred CeeeccCCc-eEEEEEec-CCcEEEEEEEeccchhhHHHHHHHHHHHhcCC-CCceeeeceEEecCCeeEEEEecCCCCC
Q 003301 665 NLIGTGGFG-SVYKGSFL-DGMEVAIKVFHLQLEGALKSFDVECEVLKSVR-HRNLVKIISSCTNNDFKALVLEYMPNGS 741 (832)
Q Consensus 665 ~~lg~G~~g-~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~ 741 (832)
+.+..|..| .||+.... ++..+++|+-... ....+.+|.+.++.+. +--+.++++++.+.+..|+|||+++|.+
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~ 106 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKT 106 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcc
Confidence 345566665 68988765 4678999986543 3356788999888774 3347888999998899999999999988
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcC----------------------------------------------
Q 003301 742 LEDYLYSNNFSFDILQRLSVIIDVALALEYLHFG---------------------------------------------- 775 (832)
Q Consensus 742 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~---------------------------------------------- 775 (832)
+.+..... ......++.+++..+..||..
T Consensus 107 ~~~~~~~~-----~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (272)
T 4gkh_A 107 AFQVLEEY-----PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWK 181 (272)
T ss_dssp HHHHHHHC-----GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHH
T ss_pred ccccccCC-----HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHH
Confidence 87765432 122334566666667777621
Q ss_pred ---------CCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 776 ---------YSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 776 ---------~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
....++|+|+.+.||+++.++.+-|+||+.|...
T Consensus 182 ~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g 224 (272)
T 4gkh_A 182 EMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA 224 (272)
T ss_dssp HHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred HHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccccC
Confidence 0113799999999999998877789999988753
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=1e-07 Score=96.36 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=59.3
Q ss_pred ccCccccCe--EeccCCccccCCCcc----ccccccCcEEEccCCcCCC--CCCCcccCcccccccccccccccccCCCh
Q 003301 17 IGNLTMLKK--LGLGYNKLRGEIPQE----LGNLAELELVSLTNNFLSG--TIPSTIFNLSSLSTGMDFSNNSLTGSLPD 88 (832)
Q Consensus 17 ~~~l~~L~~--L~ls~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~l~~~L~ls~n~l~~~lp~ 88 (832)
|...+.|+. ++++.|+.. .++.. ...+++|++|+|++|.+++ .+|..+..+++| +.|+|++|+|++ + .
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L-~~L~Ls~N~i~~-~-~ 212 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL-KILNLSGNELKS-E-R 212 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTC-CEEECTTSCCCS-G-G
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCC-CEEECCCCccCC-c-h
Confidence 444555554 556666443 23322 2345666666666666664 344555566666 666666666663 2 1
Q ss_pred hhhhcCC--CceEEEccCCcccccCCC-------CccCCCCccEEE
Q 003301 89 DMCRRLP--LIKGLYMSNNKLTGPIPN-------NIWQCKELIVIS 125 (832)
Q Consensus 89 ~~~~~l~--~L~~L~l~~N~l~~~~p~-------~l~~l~~L~~L~ 125 (832)
++ ..+. +|++|+|++|.+.+.+|+ .+..+++|+.||
T Consensus 213 ~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 213 EL-DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hh-hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 11 1233 677777777777765552 256677777775
No 419
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.40 E-value=1.1e-06 Score=90.99 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCC---ceeeeceEEecCCeeEEEEecCCC
Q 003301 663 ASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHR---NLVKIISSCTNNDFKALVLEYMPN 739 (832)
Q Consensus 663 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~~~ 739 (832)
..+.|+.|.++.||+++..+|+.|++|+...........+.+|++.++.+++. .+++++++. ..|+||||+++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 35679999999999999888999999986543333346789999999999765 577887763 35899999998
Q ss_pred CCH
Q 003301 740 GSL 742 (832)
Q Consensus 740 g~L 742 (832)
+++
T Consensus 95 ~~~ 97 (288)
T 3d1u_A 95 RPP 97 (288)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 420
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=3e-08 Score=95.55 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=59.1
Q ss_pred ccCCCCCCCCeEeCCCC-cCCCCC----CcccccCcccceeeecCCcccCCCccccccccccceecccCcccCCccCCcc
Q 003301 409 PCIGDLTSLRLLSLASN-ELNSVI----PSTFWNLKDILSLNFSSNFLNGSLPEDIGNLKVVVIIDLSRNNLSGDIPTAI 483 (832)
Q Consensus 409 ~~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 483 (832)
..+...++|+.|+|++| .+.... ...+...++|++|+|++|+|....... +...+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~--------------------l~~~L 89 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA--------------------LAEML 89 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH--------------------HHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHH--------------------HHHHH
Confidence 34556677777777777 665421 222333445555555555554211111 12222
Q ss_pred ccccccceeeccccccccc----CCccccCCCCCCeecc--CCCcccccC----chhhhhhccCCeeeCCCCccc
Q 003301 484 GGLMNLQDLSLRDNGLQGS----IPKSIGGLVSLESLDL--SNNSLSGNI----PTSMEKLLYLKDLNLSFNKLE 548 (832)
Q Consensus 484 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~ 548 (832)
...+.|++|+|++|.|.+. +...+...++|++|+| ++|.++..- ...+...+.|++|+|++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455555555555432 2334445555666666 556665432 223333456666666666654
No 421
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=3e-08 Score=95.51 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=55.5
Q ss_pred cccccCcCcccEEEeecC-ccccc----ccccccCCCCCceEEccCCccCCCC----chhhcCCCCCcEEEecCCcCCCC
Q 003301 336 PKEIGNLINLRELGLWGN-ELIGS----IPITFGKLQNLQGLDLVNNKLEGPI----PNGLCQLARLSVLYMDGNKLSGP 406 (832)
Q Consensus 336 ~~~~~~l~~L~~L~L~~N-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~ 406 (832)
...+...+.|++|+|++| .+... +...+...++|++|+|++|+|.... ...+...++|++|+|++|.|...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556677777777777 66532 3344555667777777777775422 23344445677777777766532
Q ss_pred ----CcccCCCCCCCCeEeC--CCCcCCC
Q 003301 407 ----IPPCIGDLTSLRLLSL--ASNELNS 429 (832)
Q Consensus 407 ----~p~~~~~l~~L~~L~L--~~N~l~~ 429 (832)
+...+...++|++|+| ++|.|+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 2344555566666666 5566654
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.32 E-value=1.1e-06 Score=94.27 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=90.5
Q ss_pred CCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCc--eeeeceEEecC-CeeEEEEecCC
Q 003301 662 NASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRN--LVKIISSCTNN-DFKALVLEYMP 738 (832)
Q Consensus 662 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~~ 738 (832)
...+.++.|....+|+.+. +++.+++|+.... ..+.+|.++++.+.... ++++++++... +..|+||||++
T Consensus 44 ~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~ 117 (362)
T 3ovc_A 44 SDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQ 117 (362)
T ss_dssp EEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCC
T ss_pred ceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecC
Confidence 3456789999999999886 6889999987533 35778888888876433 56777776654 66899999998
Q ss_pred CCCHHHH------------------HhhCCC----C---C---------CHHHH---------------------HHHHH
Q 003301 739 NGSLEDY------------------LYSNNF----S---F---------DILQR---------------------LSVII 763 (832)
Q Consensus 739 ~g~L~~~------------------l~~~~~----~---~---------~~~~~---------------------~~i~~ 763 (832)
|.++.+. ++.... . + .|... .....
T Consensus 118 G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (362)
T 3ovc_A 118 GVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQ 197 (362)
T ss_dssp SEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 7655321 111000 0 0 00000 00111
Q ss_pred HHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 764 DVALALEYLHF-GYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 764 ~i~~~l~~LH~-~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
.+....+++.. .....++|+|+.+.||+++.++.+.|+||+.+..-
T Consensus 198 ~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 198 ALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 11122222221 11257899999999999988778889999998754
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.21 E-value=1.2e-06 Score=94.12 Aligned_cols=80 Identities=11% Similarity=-0.011 Sum_probs=55.9
Q ss_pred CCee-eccCCceEEEEEec-------CCcEEEEEEEeccc---hhhHHHHHHHHHHHhcCC-C--CceeeeceEEecC--
Q 003301 664 SNLI-GTGGFGSVYKGSFL-------DGMEVAIKVFHLQL---EGALKSFDVECEVLKSVR-H--RNLVKIISSCTNN-- 727 (832)
Q Consensus 664 ~~~l-g~G~~g~V~~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~-h--~niv~l~~~~~~~-- 727 (832)
.+.| +.|....+|+.... +++.+++|+..... ......+.+|+++++.+. + -.+++++.++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88889999998764 26788999765432 101245778888888874 2 3577788877654
Q ss_pred -CeeEEEEecCCCCCHH
Q 003301 728 -DFKALVLEYMPNGSLE 743 (832)
Q Consensus 728 -~~~~lv~e~~~~g~L~ 743 (832)
+..|+||||++|..+.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 3568999999886654
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=98.00 E-value=1.8e-05 Score=86.27 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCeeeccCCceEEEEEec-CCcEEEEEEEeccch-------hhHHHHHHHHHHHhcCCC--C-ceeeeceEEecCCeeEE
Q 003301 664 SNLIGTGGFGSVYKGSFL-DGMEVAIKVFHLQLE-------GALKSFDVECEVLKSVRH--R-NLVKIISSCTNNDFKAL 732 (832)
Q Consensus 664 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~h--~-niv~l~~~~~~~~~~~l 732 (832)
.+.+|.|..+.||+++.. +++.|+||....... ...+++..|.++++.+.. | .+++++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 467999999999999754 468899998653211 123466789988887632 3 45566654 3345689
Q ss_pred EEecCCCC
Q 003301 733 VLEYMPNG 740 (832)
Q Consensus 733 v~e~~~~g 740 (832)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999763
No 425
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.95 E-value=3.2e-05 Score=82.42 Aligned_cols=139 Identities=16% Similarity=0.112 Sum_probs=79.0
Q ss_pred CeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCC--Cceeeece------EEecCCeeEEEEec
Q 003301 665 NLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRH--RNLVKIIS------SCTNNDFKALVLEY 736 (832)
Q Consensus 665 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~------~~~~~~~~~lv~e~ 736 (832)
+.++.|..+.||++...+ ..+++|+..... ..+..|.++++.+.. -.+++++. +....+..+++|||
T Consensus 38 ~~l~gG~~n~~~~v~~~~-~~~vlk~~~~~~----~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDS-GAVCLKRIHRPE----KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETT-EEEEEEEECSCH----HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCC-CCEEEEecCCCH----HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 446667789999998744 459999887532 233445555554421 12334433 12346678999999
Q ss_pred CCCCCHH-----------HH---Hhh--CCC--C---------CCHHHH-------------------------------
Q 003301 737 MPNGSLE-----------DY---LYS--NNF--S---------FDILQR------------------------------- 758 (832)
Q Consensus 737 ~~~g~L~-----------~~---l~~--~~~--~---------~~~~~~------------------------------- 758 (832)
++|..+. +. ++. ... . ..|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9886432 01 111 100 0 112110
Q ss_pred HHHHHHHHHHHHHHhc----------CCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 759 LSVIIDVALALEYLHF----------GYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 759 ~~i~~~i~~~l~~LH~----------~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
..+..++..++++++. ....+++|+|+++.||+++.++.+.|+||+.+..
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 0111123345556541 0257899999999999998888999999998864
No 426
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=5.9e-06 Score=77.27 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=40.8
Q ss_pred cccEEEeecCcccccccccccCCCCCceEEccCCc-cCCCCchhhcCC----CCCcEEEecCCc-CCCCCcccCCCCCCC
Q 003301 344 NLRELGLWGNELIGSIPITFGKLQNLQGLDLVNNK-LEGPIPNGLCQL----ARLSVLYMDGNK-LSGPIPPCIGDLTSL 417 (832)
Q Consensus 344 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~L 417 (832)
.|++||++++.++...-..+.++++|++|+|++|. |++..-..++.+ ++|++|+|++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544444445555555555555553 443333334433 245555555553 443323334455555
Q ss_pred CeEeCCCCc
Q 003301 418 RLLSLASNE 426 (832)
Q Consensus 418 ~~L~L~~N~ 426 (832)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555553
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=6.4e-06 Score=77.04 Aligned_cols=84 Identities=8% Similarity=0.019 Sum_probs=44.4
Q ss_pred CCccEEECcCCcccccCCCCCcCCCcCceEEecccc-cccccCccccCc----cccceecccccc-cccccCcccccCCc
Q 003301 119 KELIVISLAYNQFTERIPRGLGNLTSLKTLYLGFNN-LTGEIPYEMGNL----RNLEILGLQLNK-LVGFVPTSIFNLSA 192 (832)
Q Consensus 119 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~N~-i~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~~~~~~~l~~ 192 (832)
.+|++||++++.|+..--..+.++++|++|+|++|. |+..--..++.+ ++|++|+|++|. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 355666666665554444445566666666666664 443222223332 356666666653 54322233555666
Q ss_pred ccEEEecCCC
Q 003301 193 MKTLALPSNA 202 (832)
Q Consensus 193 L~~L~L~~n~ 202 (832)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666654
No 428
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.67 E-value=0.00029 Score=73.29 Aligned_cols=136 Identities=11% Similarity=0.063 Sum_probs=92.0
Q ss_pred CCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCC---CCceeeeceEEecCCeeEEEEecCCCC
Q 003301 664 SNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVR---HRNLVKIISSCTNNDFKALVLEYMPNG 740 (832)
Q Consensus 664 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~g 740 (832)
.+.|+.|....+|+... +++.+++|+.... ....+.+|.+.++.+. ...++++++++...+..|+||||++|.
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~ 116 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS 116 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence 46789999999999986 5778999987643 2467888999888873 356888999888888899999999987
Q ss_pred CHH--------H---HHhhCCC--C-------------------CCHHHHH---HHH----------------HHHHHH-
Q 003301 741 SLE--------D---YLYSNNF--S-------------------FDILQRL---SVI----------------IDVALA- 768 (832)
Q Consensus 741 ~L~--------~---~l~~~~~--~-------------------~~~~~~~---~i~----------------~~i~~~- 768 (832)
.+. + .++.... . -+|.... ++. .+++..
T Consensus 117 ~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l 196 (312)
T 3jr1_A 117 KNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIV 196 (312)
T ss_dssp CCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 542 1 1222111 0 1233211 111 111111
Q ss_pred HHHHh-cCCCCCeEecCCCCCCeEeCCCCcEEEeccc
Q 003301 769 LEYLH-FGYSNPVVHCDIKPSNVLLDKDMVAHLSDFG 804 (832)
Q Consensus 769 l~~LH-~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg 804 (832)
...+. ......++|+|+.+.|++++.++ +.|+||+
T Consensus 197 ~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 197 ADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 12332 12357899999999999999887 8999984
No 429
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.57 E-value=0.00021 Score=78.25 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=45.3
Q ss_pred CCeeeccCCceEEEEEecCCcEEEEEEEeccc----hh-----hHHHHHHHHHHHh-cCCCCceeeeceEEecCCeeEEE
Q 003301 664 SNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL----EG-----ALKSFDVECEVLK-SVRHRNLVKIISSCTNNDFKALV 733 (832)
Q Consensus 664 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----~~-----~~~~~~~e~~~l~-~l~h~niv~l~~~~~~~~~~~lv 733 (832)
.+.+|.|..+.||++.. +++.++||...... .. ....+..|+..+. ......+++++.+. .+..++|
T Consensus 39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv 115 (420)
T 2pyw_A 39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG 115 (420)
T ss_dssp EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence 46789999999999965 57789999432111 00 1223333333222 12234577777765 4567899
Q ss_pred EecC-CC
Q 003301 734 LEYM-PN 739 (832)
Q Consensus 734 ~e~~-~~ 739 (832)
|||+ ++
T Consensus 116 ~e~l~~g 122 (420)
T 2pyw_A 116 MRYLEPP 122 (420)
T ss_dssp ECCCCTT
T ss_pred EeecCCc
Confidence 9999 76
No 430
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.55 E-value=0.00039 Score=71.80 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=56.9
Q ss_pred CCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCC---CceeeeceEEecCCeeEEEEec
Q 003301 660 QFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRH---RNLVKIISSCTNNDFKALVLEY 736 (832)
Q Consensus 660 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h---~niv~l~~~~~~~~~~~lv~e~ 736 (832)
...-.+.+|.|..+.||+.+..+|+.|++|+...........+.+|.+.++.+.. --+++++++. ..++||||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~ 91 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW 91 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence 3444678999999999999998999999998665443334567889999887742 2345555542 23799999
Q ss_pred CCCCC
Q 003301 737 MPNGS 741 (832)
Q Consensus 737 ~~~g~ 741 (832)
++++.
T Consensus 92 l~~~~ 96 (288)
T 3f7w_A 92 VDERP 96 (288)
T ss_dssp CCCCC
T ss_pred ecccC
Confidence 97764
No 431
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.47 E-value=0.00021 Score=75.22 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=87.1
Q ss_pred cchHHHHHHhcCCCCC-----CeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCc--eeeec
Q 003301 649 FSYKELLQATNQFNAS-----NLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRN--LVKII 721 (832)
Q Consensus 649 ~~~~~~~~~~~~~~~~-----~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~ 721 (832)
.+.+++......|.+. +.|+.|....+|+....+| .+++|+..... ..+.+..|.++++.+.... +++++
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~ 83 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPL 83 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCccc
Confidence 4455555555666653 3466788889999987545 78899887531 1234556777776663212 33443
Q ss_pred eE------EecCCeeEEEEecCCCCCHHH----H----------Hhh--CC--CC----CC---HHHHHH----------
Q 003301 722 SS------CTNNDFKALVLEYMPNGSLED----Y----------LYS--NN--FS----FD---ILQRLS---------- 760 (832)
Q Consensus 722 ~~------~~~~~~~~lv~e~~~~g~L~~----~----------l~~--~~--~~----~~---~~~~~~---------- 760 (832)
.. ....+..+++|+|++|..+.. . ++. .. .. .. |.....
T Consensus 84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 163 (322)
T 2ppq_A 84 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVE 163 (322)
T ss_dssp CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTS
T ss_pred CCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhh
Confidence 21 123456789999998864311 0 111 00 00 01 111000
Q ss_pred --HHHHHHHHHHHHhc----CCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 761 --VIIDVALALEYLHF----GYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 761 --i~~~i~~~l~~LH~----~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
+...+...+++++. ....+++|+|+.+.||+++.++.+.++||+.+..
T Consensus 164 ~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 164 KGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp TTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred hhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 00113334444441 1246899999999999998876668999998764
No 432
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.27 E-value=0.0013 Score=69.49 Aligned_cols=140 Identities=12% Similarity=0.062 Sum_probs=74.5
Q ss_pred CeeeccCCce-EEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCC--CceeeeceEEecCCeeEEEEecCCCCC
Q 003301 665 NLIGTGGFGS-VYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRH--RNLVKIISSCTNNDFKALVLEYMPNGS 741 (832)
Q Consensus 665 ~~lg~G~~g~-V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~g~ 741 (832)
+.++.|+... +|+....+++.+++|....... ..+..|+++++.+.. -.+++++.+....+ +++||++.+..
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence 4565565544 6677654477788875443211 234456666666532 23566666644443 78999997766
Q ss_pred HHHHHhhCC-------------------------CCCCHHHHH-------HHH-------------HHHHHHHHHHh---
Q 003301 742 LEDYLYSNN-------------------------FSFDILQRL-------SVI-------------IDVALALEYLH--- 773 (832)
Q Consensus 742 L~~~l~~~~-------------------------~~~~~~~~~-------~i~-------------~~i~~~l~~LH--- 773 (832)
+.+++.... ..++..... .+. ..+...++.+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 654432110 012221110 000 01111222221
Q ss_pred cCCCCCeEecCCCCCCeEeCCC----CcEEEecccccccc
Q 003301 774 FGYSNPVVHCDIKPSNVLLDKD----MVAHLSDFGIAKLL 809 (832)
Q Consensus 774 ~~~~~~ivH~Dlkp~NIl~~~~----~~~kl~DFg~a~~~ 809 (832)
......++|||+.+.||+++.+ +.+.++||+.|..-
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 1125689999999999999875 68999999988754
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.27 E-value=0.00067 Score=70.55 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=76.4
Q ss_pred CCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCce-eeeceEEecCCeeEEEEecC-CCC
Q 003301 663 ASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNL-VKIISSCTNNDFKALVLEYM-PNG 740 (832)
Q Consensus 663 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~g 740 (832)
-.+.|+.|....+|++ +.+++|+........ ....+|.++++.+....+ ++++++. .+.-++++||+ +|.
T Consensus 22 ~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~-~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~ 93 (301)
T 3dxq_A 22 GPLERLGGLTNLVFRA-----GDLCLRIPGKGTEEY-INRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQ 93 (301)
T ss_dssp SCEEEESCSSEEEEEE-----TTEEEEEECC----C-CCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCE
T ss_pred ceeEcCCcccccccee-----eeEEEECCCCCccce-eCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCc
Confidence 3678999999999998 578999876432211 123457777766642222 4565543 33347899999 664
Q ss_pred CHHHH------------------HhhCCCC----CCH-HHHHHHHHH--------------HHHHH----HHHh-cCCCC
Q 003301 741 SLEDY------------------LYSNNFS----FDI-LQRLSVIID--------------VALAL----EYLH-FGYSN 778 (832)
Q Consensus 741 ~L~~~------------------l~~~~~~----~~~-~~~~~i~~~--------------i~~~l----~~LH-~~~~~ 778 (832)
++... ++..... .+. .....+... +...+ +.+. .....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~ 173 (301)
T 3dxq_A 94 TMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPL 173 (301)
T ss_dssp ECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCC
T ss_pred cCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCc
Confidence 44210 0111110 111 111111000 11111 1111 12245
Q ss_pred CeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 779 PVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 779 ~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
.++|+|+.+.||+ ..++.+.++||+.|..-
T Consensus 174 ~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g 203 (301)
T 3dxq_A 174 AACHCDPLCENFL-DTGERMWIVDWEYSGMN 203 (301)
T ss_dssp EEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred eeeccCCCcCCEE-ECCCCEEEEecccccCC
Confidence 6899999999999 56678899999988753
No 434
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.24 E-value=0.0014 Score=68.97 Aligned_cols=140 Identities=12% Similarity=0.080 Sum_probs=81.2
Q ss_pred CeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCC--ceeeeceE-----EecCCeeEEEEecC
Q 003301 665 NLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHR--NLVKIISS-----CTNNDFKALVLEYM 737 (832)
Q Consensus 665 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~--niv~l~~~-----~~~~~~~~lv~e~~ 737 (832)
+.++ |....||++...+|+.+++|...... .....+..|.++++.+... .+++++.. ....+..+++|||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 3566 88889999877667789999986431 1234566788877766321 24444442 12345678999999
Q ss_pred CCCCHH-----HH---------Hhh----CC----CCCCHHHH----------------------HHHHHHHHHHHHHHh
Q 003301 738 PNGSLE-----DY---------LYS----NN----FSFDILQR----------------------LSVIIDVALALEYLH 773 (832)
Q Consensus 738 ~~g~L~-----~~---------l~~----~~----~~~~~~~~----------------------~~i~~~i~~~l~~LH 773 (832)
+|..+. .+ ++. .. ..++.... ...+.+++..++-.-
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 874431 11 110 00 11222111 011111222222211
Q ss_pred c-CCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 774 F-GYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 774 ~-~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
. .....++|+|+++.||+++ + .+.++||+.+..
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 0 1256789999999999998 4 899999988764
No 435
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.23 E-value=0.00034 Score=62.27 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=40.5
Q ss_pred eeeccccccc-ccCCccccCCCCCCeeccCCCcccccCchhhhhhccCCeeeCCCCcccccCC
Q 003301 491 DLSLRDNGLQ-GSIPKSIGGLVSLESLDLSNNSLSGNIPTSMEKLLYLKDLNLSFNKLEGEIP 552 (832)
Q Consensus 491 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 552 (832)
.++.+++.++ ..+|..+. ++|+.|||++|+|+...+..|..+++|+.|+|++|+|.+.+-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5666666665 23454322 357777888888877666677777788888888888876553
No 436
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.08 E-value=0.00078 Score=73.73 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCeeeccCCceEEEEEecC--------CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCc-eeeeceEEecCCeeEEEE
Q 003301 664 SNLIGTGGFGSVYKGSFLD--------GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRN-LVKIISSCTNNDFKALVL 734 (832)
Q Consensus 664 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~ 734 (832)
.+.|+.|....||++...+ ++.|++|+..... ..+.+.+|..+++.+...+ .+++++.+.+ .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--TESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--CHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--cHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence 3568888899999998753 5789999884321 1134557888888774333 4667766542 3899
Q ss_pred ecCCCCC
Q 003301 735 EYMPNGS 741 (832)
Q Consensus 735 e~~~~g~ 741 (832)
||++|.+
T Consensus 152 e~l~G~~ 158 (429)
T 1nw1_A 152 EYIPSRP 158 (429)
T ss_dssp CCCCEEE
T ss_pred EEeCCcc
Confidence 9998643
No 437
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.08 E-value=0.0013 Score=70.22 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=83.4
Q ss_pred CeeeccCCceEEEEEec--------CCcEEEEEEEeccchhhHHHHHHHHHHHhcCC-CCceeeeceEEecCCeeEEEEe
Q 003301 665 NLIGTGGFGSVYKGSFL--------DGMEVAIKVFHLQLEGALKSFDVECEVLKSVR-HRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 665 ~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e 735 (832)
+.+..|-...+|++... +++.|++|+.... ........+|.++++.+. +.-.+++++++.. .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 56778888999999864 2478999986332 223355668999888774 3334667766543 39999
Q ss_pred cCCCCCHHH-----------H------HhhCC----CCCC--HHHHHHHHHHHHH-------------------HHHHHh
Q 003301 736 YMPNGSLED-----------Y------LYSNN----FSFD--ILQRLSVIIDVAL-------------------ALEYLH 773 (832)
Q Consensus 736 ~~~~g~L~~-----------~------l~~~~----~~~~--~~~~~~i~~~i~~-------------------~l~~LH 773 (832)
|++|.++.. + ++... .... +.++.++..++.. .++++.
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 998755421 1 11111 1122 3455555544322 223322
Q ss_pred -----cCCCCCeEecCCCCCCeEeCCC----CcEEEeccccccc
Q 003301 774 -----FGYSNPVVHCDIKPSNVLLDKD----MVAHLSDFGIAKL 808 (832)
Q Consensus 774 -----~~~~~~ivH~Dlkp~NIl~~~~----~~~kl~DFg~a~~ 808 (832)
......++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 1224578999999999999876 7899999998874
No 438
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=7.2e-05 Score=71.31 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=9.0
Q ss_pred cCCCCccEEEcCCC-cCc
Q 003301 238 FNASKLSVLELGEN-SFS 254 (832)
Q Consensus 238 ~~l~~L~~L~L~~N-~i~ 254 (832)
.+-+.|++|+|++| .|.
T Consensus 38 ~~n~~L~~L~L~~nn~ig 55 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVS 55 (197)
T ss_dssp TTCSSCCEEECTTCCSSC
T ss_pred hcCCCccEEECCCCCCCC
Confidence 34455666666653 554
No 439
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.02 E-value=0.00015 Score=69.12 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=49.2
Q ss_pred ccCcCcccEEEeecC-cccc----cccccccCCCCCceEEccCCccCCCC----chhhcCCCCCcEEEecCCcCCCC---
Q 003301 339 IGNLINLRELGLWGN-ELIG----SIPITFGKLQNLQGLDLVNNKLEGPI----PNGLCQLARLSVLYMDGNKLSGP--- 406 (832)
Q Consensus 339 ~~~l~~L~~L~L~~N-~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~--- 406 (832)
+.+-+.|++|+|++| +|.. .+.+++..-+.|+.|+|++|+|.... ...+..-+.|++|+|++|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344456777777764 5542 23344555667777777777775332 23333445677777777776532
Q ss_pred -CcccCCCCCCCCeEeCCCC
Q 003301 407 -IPPCIGDLTSLRLLSLASN 425 (832)
Q Consensus 407 -~p~~~~~l~~L~~L~L~~N 425 (832)
+...+..-+.|+.|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 2233445556677776654
No 440
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.83 E-value=0.0027 Score=69.73 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=47.8
Q ss_pred CCeeeccCCceEEEEEecC-CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCc-eeeeceEEecCCeeEEEEecCCCCC
Q 003301 664 SNLIGTGGFGSVYKGSFLD-GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRN-LVKIISSCTNNDFKALVLEYMPNGS 741 (832)
Q Consensus 664 ~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~e~~~~g~ 741 (832)
.+.|+.|-...+|++...+ +..|++|+........ -.-.+|..+++.+...+ .+++++++. + ..||||++|.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCcc
Confidence 3578889899999998754 4789999875432211 11257888888875433 366777663 2 35999998744
Q ss_pred H
Q 003301 742 L 742 (832)
Q Consensus 742 L 742 (832)
+
T Consensus 188 l 188 (458)
T 2qg7_A 188 L 188 (458)
T ss_dssp C
T ss_pred C
Confidence 3
No 441
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.78 E-value=0.0016 Score=69.94 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=43.5
Q ss_pred CeeeccCCceEEEEEecC---------CcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCc-eeeeceEEecCCeeEEEE
Q 003301 665 NLIGTGGFGSVYKGSFLD---------GMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRN-LVKIISSCTNNDFKALVL 734 (832)
Q Consensus 665 ~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~ 734 (832)
+.++.|....+|++...+ ++.|++|+....... ......|.++++.+...+ ++++++.. . -++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence 467788889999998643 268888886543221 112356888877774323 45666554 2 26899
Q ss_pred ecCCCCC
Q 003301 735 EYMPNGS 741 (832)
Q Consensus 735 e~~~~g~ 741 (832)
||++|.+
T Consensus 114 e~i~G~~ 120 (369)
T 3c5i_A 114 EWLYGDP 120 (369)
T ss_dssp ECCCSEE
T ss_pred EEecCCc
Confidence 9998754
No 442
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.63 E-value=0.013 Score=61.90 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=28.9
Q ss_pred CCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 777 SNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 777 ~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
...++|+|+.+.||+++.++.+.++||+.+...
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~ 237 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA 237 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence 457999999999999998889999999887653
No 443
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.51 E-value=0.0042 Score=55.13 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=17.9
Q ss_pred CccEEEcCCCcCcccCCccccCccccceeecccccCC
Q 003301 242 KLSVLELGENSFSGFIPNTLGNLRKLEWLRLSYNFLT 278 (832)
Q Consensus 242 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 278 (832)
+|++|+|++|+|+.+.++.|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3444444444444444444444555555555555443
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.42 E-value=0.0066 Score=65.05 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=83.7
Q ss_pred CeeeccCCceEEEEEecC--------CcEEEEEEEeccchh------------------hHHHHHHHHHHHhcCC-CCce
Q 003301 665 NLIGTGGFGSVYKGSFLD--------GMEVAIKVFHLQLEG------------------ALKSFDVECEVLKSVR-HRNL 717 (832)
Q Consensus 665 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~------------------~~~~~~~e~~~l~~l~-h~ni 717 (832)
+.|..|-...+|++...+ ++.|++++.-...+. ..+....|.++++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 467778889999988753 367899887543221 0112335888887774 4446
Q ss_pred eeeceEEecCCeeEEEEecCCCCCHHH--H---------------HhhCC----CCCC--HHHHHHHHHHHH--------
Q 003301 718 VKIISSCTNNDFKALVLEYMPNGSLED--Y---------------LYSNN----FSFD--ILQRLSVIIDVA-------- 766 (832)
Q Consensus 718 v~l~~~~~~~~~~~lv~e~~~~g~L~~--~---------------l~~~~----~~~~--~~~~~~i~~~i~-------- 766 (832)
+++++++.. .+|+||++|.+|.. + ++... .... +....++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 677777643 28999998754421 1 11111 1122 223334443321
Q ss_pred --------------HHHH----HHh-cCCCCCeEecCCCCCCeEeCCC------CcEEEeccccccc
Q 003301 767 --------------LALE----YLH-FGYSNPVVHCDIKPSNVLLDKD------MVAHLSDFGIAKL 808 (832)
Q Consensus 767 --------------~~l~----~LH-~~~~~~ivH~Dlkp~NIl~~~~------~~~kl~DFg~a~~ 808 (832)
..+. ++. ......++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 1122 222 1235578999999999999876 7999999998864
No 445
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.80 E-value=0.011 Score=63.90 Aligned_cols=138 Identities=13% Similarity=0.172 Sum_probs=82.7
Q ss_pred CeeeccCCceEEEEEecC--------CcEEEEEEEeccchhhHHHHHHHHHHHhcCC-CCceeeeceEEecCCeeEEEEe
Q 003301 665 NLIGTGGFGSVYKGSFLD--------GMEVAIKVFHLQLEGALKSFDVECEVLKSVR-HRNLVKIISSCTNNDFKALVLE 735 (832)
Q Consensus 665 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e 735 (832)
+.+..|-...+|++...+ ++.|++|+.....+. .-...+|.++++.+. +.-.+++++.+. -+.|||
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~-~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~e 150 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGK-FYDSKVELDVFRYLSNINIAPNIIADFP----EGRIEE 150 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-C-CCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEEE
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcch-hcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEEE
Confidence 567778889999998753 578999986543221 122356888877774 333456665432 278999
Q ss_pred cCCCCCHHH-----------H---Hh------h-----C---CCC-CCHHHHHHHHHHH-------------------HH
Q 003301 736 YMPNGSLED-----------Y---LY------S-----N---NFS-FDILQRLSVIIDV-------------------AL 767 (832)
Q Consensus 736 ~~~~g~L~~-----------~---l~------~-----~---~~~-~~~~~~~~i~~~i-------------------~~ 767 (832)
|++|.++.. + +. . . ... .-+.++.++..++ ..
T Consensus 151 fI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~ 230 (424)
T 3mes_A 151 FIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKILE 230 (424)
T ss_dssp CCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHH
T ss_pred EeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHHHHH
Confidence 998865311 0 00 0 0 101 1133333333222 12
Q ss_pred HHHHHh---------------------cCCCCCeEecCCCCCCeEeCCCCcEEEeccccccc
Q 003301 768 ALEYLH---------------------FGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKL 808 (832)
Q Consensus 768 ~l~~LH---------------------~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~ 808 (832)
.+++|. ......++|+|+.+.||+ +.++.+.++||..|..
T Consensus 231 e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 231 EIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred HHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 233332 111356899999999999 7888999999998874
No 446
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=93.42 E-value=0.16 Score=54.73 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.7
Q ss_pred CeEecCCCCCCeEe------CCCCcEEEeccccccc
Q 003301 779 PVVHCDIKPSNVLL------DKDMVAHLSDFGIAKL 808 (832)
Q Consensus 779 ~ivH~Dlkp~NIl~------~~~~~~kl~DFg~a~~ 808 (832)
.++|+|+.+.||++ +++..++++||..|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 46799999999999 4567899999998874
No 447
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=74.30 E-value=0.49 Score=51.80 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=18.3
Q ss_pred CCCCeeeccCCceEEEEEecC-CcEEEE------EEEeccc--hhhHHHHHHHHHHHhcCCCCceeeeceEEe
Q 003301 662 NASNLIGTGGFGSVYKGSFLD-GMEVAI------KVFHLQL--EGALKSFDVECEVLKSVRHRNLVKIISSCT 725 (832)
Q Consensus 662 ~~~~~lg~G~~g~V~~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~ 725 (832)
.+.+.+| ||.||+|.+.. ..+||| |..+... .+....+.+|..+++..+|||+++.+++..
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 4456676 99999998854 467888 6654322 223356788899999999999999988754
No 448
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=73.47 E-value=9.8 Score=36.33 Aligned_cols=86 Identities=10% Similarity=0.157 Sum_probs=61.3
Q ss_pred CCCceeeeceEEecCCeeEEEEecCCCC-CHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-HHhcCCCCCeEecCCCCCCe
Q 003301 713 RHRNLVKIISSCTNNDFKALVLEYMPNG-SLEDYLYSNNFSFDILQRLSVIIDVALALE-YLHFGYSNPVVHCDIKPSNV 790 (832)
Q Consensus 713 ~h~niv~l~~~~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~-~LH~~~~~~ivH~Dlkp~NI 790 (832)
.||++ -..+-.+++.+.+.++.-+++ +.. .++ ..+...+++++..++...+ +++ .-+|--+.|+|+
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~-~i~----~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL 115 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFA-AIR----KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENL 115 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHH-HHH----TSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHH-HHH----hcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceE
Confidence 57777 333445667766666654333 333 333 3678889999999888776 555 457888999999
Q ss_pred EeCCCCcEEEeccccccccC
Q 003301 791 LLDKDMVAHLSDFGIAKLLS 810 (832)
Q Consensus 791 l~~~~~~~kl~DFg~a~~~~ 810 (832)
++|.++.++|.-.|.-..+.
T Consensus 116 ~f~~~~~p~i~hRGi~~~lp 135 (219)
T 4ano_A 116 MFNRALEPFFLHVGVKESLP 135 (219)
T ss_dssp EECTTCCEEESCCEETTTBS
T ss_pred EEeCCCcEEEEEcCCcccCC
Confidence 99999999999999865553
No 449
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=71.39 E-value=7.4 Score=37.02 Aligned_cols=88 Identities=9% Similarity=0.158 Sum_probs=62.7
Q ss_pred CCCceeeeceEEecCCeeEEEEecCC-CCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeE
Q 003301 713 RHRNLVKIISSCTNNDFKALVLEYMP-NGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVL 791 (832)
Q Consensus 713 ~h~niv~l~~~~~~~~~~~lv~e~~~-~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl 791 (832)
.||+++.. .+-.+++.+.+.++.-+ +-+... ++ ..+...+++++..|+...++++ .-+|=-+.|+|++
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik----~~~~~eKlr~l~ni~~l~~~~~-----~r~tf~L~P~NL~ 111 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IK----SFTKNEKLRYLLNIKNLEEVNR-----TRYTFVLAPDELF 111 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GG----GSCHHHHHHHHHHGGGGGGGGG-----SSEECCCSGGGEE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HH----hcCHHHHHHHHHHHHHHHHHhc-----CceEEEEecceEE
Confidence 57887765 45556666555555433 223322 32 3678899999999998886666 3478889999999
Q ss_pred eCCCCcEEEeccccccccCC
Q 003301 792 LDKDMVAHLSDFGIAKLLSG 811 (832)
Q Consensus 792 ~~~~~~~kl~DFg~a~~~~~ 811 (832)
++.++.+++.-.|+...+.+
T Consensus 112 f~~~~~p~i~~RGik~~l~P 131 (215)
T 4ann_A 112 FTRDGLPIAKTRGLQNVVDP 131 (215)
T ss_dssp ECTTSCEEESCCEETTTBSC
T ss_pred EcCCCCEEEEEccCccCCCC
Confidence 99999999999998655433
No 450
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=52.19 E-value=1.6e+02 Score=33.42 Aligned_cols=45 Identities=27% Similarity=0.207 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH--HHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccc
Q 003301 756 LQRLSVIIDVA--LALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAK 807 (832)
Q Consensus 756 ~~~~~i~~~i~--~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~ 807 (832)
..+..++..+| ..+.|+= |+ +|=.++|||++.+|.+.-+|||.+-
T Consensus 529 ~ar~nF~~SlA~~Svv~YIL-----Gl--GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 529 EVMDTYIKSCAGYCVITYLL-----GV--GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TC--CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHc-----cC--CCCCCcceEEeCCCCEEEEeehhhh
Confidence 34455555544 3355554 23 6888999999999999999999874
No 451
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.24 E-value=27 Score=28.61 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCCCcccCCCCCCCCeEeCCCCcCCCCCCcccccCcccceeeecC
Q 003301 404 SGPIPPCIGDLTSLRLLSLASNELNSVIPSTFWNLKDILSLNFSS 448 (832)
Q Consensus 404 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 448 (832)
+.+-..+|.++++|+.+.+-.+ ++.+...+|.++.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3333445555555555555443 3444455555555555555543
No 452
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=47.19 E-value=2.1e+02 Score=31.79 Aligned_cols=46 Identities=24% Similarity=0.188 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHH--HHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEecccccc
Q 003301 755 ILQRLSVIIDVA--LALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAK 807 (832)
Q Consensus 755 ~~~~~~i~~~i~--~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~ 807 (832)
+..+..+++.+| ..+.|+= || +|=.++|||++.+|.+.=+|||.+-
T Consensus 454 ~~a~~nF~~S~A~ySvv~YIL-----Gi--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYIL-----GV--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----TC--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhheee-----ec--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 445555665544 3455665 33 5778999999999999999999874
No 453
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.99 E-value=23 Score=28.93 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=23.2
Q ss_pred ccccccCCcccCCCCccEEEcCCCcCcccCCccccCccccceeeccc
Q 003301 228 NFSGIIPSFIFNASKLSVLELGENSFSGFIPNTLGNLRKLEWLRLSY 274 (832)
Q Consensus 228 ~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 274 (832)
.++.+...+|.++++|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344445555555666665555443 3334444555555555555543
No 454
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=42.51 E-value=5.3 Score=27.01 Aligned_cols=6 Identities=50% Similarity=0.672 Sum_probs=2.3
Q ss_pred eeehhh
Q 003301 622 MISRCQ 627 (832)
Q Consensus 622 ~~~r~~ 627 (832)
+.||++
T Consensus 34 ~~RRR~ 39 (44)
T 2jwa_A 34 LIKRRQ 39 (44)
T ss_dssp HHHHHC
T ss_pred heehhh
Confidence 333333
No 455
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding, glyoxylate bypass, nucleotide-binding, protein phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157} PDB: 3lcb_A* 3lc6_A*
Probab=39.89 E-value=1.6e+02 Score=31.84 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=95.6
Q ss_pred hHHHHHHhcCCCCCCeeeccCCceEEEEEecCCcEEEEEEEeccc----hhhHHHHHHHHHHHhcCCCCceeeeceE---
Q 003301 651 YKELLQATNQFNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQL----EGALKSFDVECEVLKSVRHRNLVKIISS--- 723 (832)
Q Consensus 651 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~--- 723 (832)
|.+.......=.-.=.+.-|--|.|..+-...+-+++.|+++... +...+.......+.++ |.-+=++-+.
T Consensus 298 YR~~l~hl~~s~D~Fi~APGikGmVM~VFTLPSf~~VFKvIKD~F~p~K~~tr~~Vk~KY~LVK~--hDRVGRMADT~Ef 375 (578)
T 3eps_A 298 YREYLVYLQGCNEQFIEAPGIRGMVMLVFTLPGFDRVFKVIKDKFAPQKEMSAAHVRACYQLVKE--HDRVGRMADTQEF 375 (578)
T ss_dssp HHHHHHHHHTCCCCBEECSSCCCSSEEEEECTTCSEEEEEECSSCCTTCCCCHHHHHHHHHHHHT--SCCTTTBCCCEEE
T ss_pred HHHHHHHhccCchhEEECCCCCceEEEEEcCCCCceEEEEEccCCCCccccCHHHHHHHHHHHHh--hhhhhhhhhhhhh
Confidence 344433333323344688899999999977788899999998553 2223344444444443 3322222111
Q ss_pred --------------------------EecCCeeE---EEEecCCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 003301 724 --------------------------CTNNDFKA---LVLEYMPNGSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHF 774 (832)
Q Consensus 724 --------------------------~~~~~~~~---lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~ 774 (832)
-.+++.+. +.+|.- ...|.=|+++. +.+++...+.+-..|++.|-
T Consensus 376 sn~~fp~~Rfs~eLL~EL~~~~ps~le~~gd~liIkHlYiERR-MtPLNLYL~~a----~~~~~~~av~eYG~AIKqLA- 449 (578)
T 3eps_A 376 ENFVLEKRHISPALMELLLQEAAEKITDLGEQIVIRHLYIERR-MVPLNIWLEQV----EGQQLRDAIEEYGNAIRQLA- 449 (578)
T ss_dssp EEEEEEGGGBCHHHHHHHHHHSGGGEEEETTEEEEEEEEEEEC-CEEHHHHHHHC----CTHHHHHHHHHHHHHHHHHH-
T ss_pred hcccCchhhCCHHHHHHHHHhCCccEEEcCCeeEeeeeeeecc-ccchhHHHhhC----CHHHHHHHHHHHHHHHHHHH-
Confidence 11223222 223332 24566667653 45677788889999999999
Q ss_pred CCCCCeEecCCCCCCeEeCCCCcEEEecccccccc
Q 003301 775 GYSNPVVHCDIKPSNVLLDKDMVAHLSDFGIAKLL 809 (832)
Q Consensus 775 ~~~~~ivH~Dlkp~NIl~~~~~~~kl~DFg~a~~~ 809 (832)
..+|.-||.--.|+=|+..|+|..=|+.=-..+
T Consensus 450 --aANIFPGDML~KNFGVTRhgRVVFYDYDEI~yl 482 (578)
T 3eps_A 450 --AANIFPGDMLFKNFGVTRHGRVVFYDYDEICYM 482 (578)
T ss_dssp --HTTEECSCCCGGGEEECTTCCEEECCGGGCEES
T ss_pred --HhcCCCcccccccCCccccceEEEecccceeee
Confidence 899999999999999999999999999755444
No 456
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=32.89 E-value=58 Score=33.11 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=69.5
Q ss_pred CCCCCeeeccCCceEEEEEecCCcEEEEEEEeccchhhHHHHHHHHHHHhcCCCCce--eeec---------------eE
Q 003301 661 FNASNLIGTGGFGSVYKGSFLDGMEVAIKVFHLQLEGALKSFDVECEVLKSVRHRNL--VKII---------------SS 723 (832)
Q Consensus 661 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni--v~l~---------------~~ 723 (832)
++..+....|..| ||.+.. ++..|+||-.. .-..+.+..++...-.+.-|.. +..- ..
T Consensus 71 v~~I~~s~~Gstg-vff~~t-d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 71 FKGIERSEKGTEG-LFFVET-ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEEEECCSTTSC-EEEEEE-SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSS
T ss_pred eeEEEeccCCCCC-eEEEEe-CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhh
Confidence 3344555566554 554444 68889999431 1222344444444444444442 1111 00
Q ss_pred -----EecCCeeEEEEecCCCCCHHHHHhhC-CCCCCHHHHHHHHHHH--HHHHHHHh-cCCCCCeEe-cCCCCCCeEeC
Q 003301 724 -----CTNNDFKALVLEYMPNGSLEDYLYSN-NFSFDILQRLSVIIDV--ALALEYLH-FGYSNPVVH-CDIKPSNVLLD 793 (832)
Q Consensus 724 -----~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i--~~~l~~LH-~~~~~~ivH-~Dlkp~NIl~~ 793 (832)
........++|||++|..|.+.-... ...+... .+.++ +-+++++. ...+...+. .--.+.|||++
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~~~----~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~ 221 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTSAPEVLTKS----TMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLS 221 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCHH----HHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEE
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhhhhhhcCHH----HHHhhchhheehhhhcCCccCcccccCCCChhheEEe
Confidence 00122456999999876654321110 0012222 23332 23445544 222222222 23578899997
Q ss_pred CCC-cEEEecccccccc
Q 003301 794 KDM-VAHLSDFGIAKLL 809 (832)
Q Consensus 794 ~~~-~~kl~DFg~a~~~ 809 (832)
+++ .+.++|-+.|..-
T Consensus 222 ~~n~~~~~IDhn~af~~ 238 (342)
T 1cja_A 222 ERGATVVPIDSKIIPLD 238 (342)
T ss_dssp SBTTCEEECSCCCCCCC
T ss_pred CCCCeEEEEcCCccccC
Confidence 655 5999999999754
No 457
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=31.62 E-value=59 Score=30.96 Aligned_cols=61 Identities=18% Similarity=0.041 Sum_probs=46.5
Q ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCcEEEec
Q 003301 740 GSLEDYLYSNNFSFDILQRLSVIIDVALALEYLHFGYSNPVVHCDIKPSNVLLDKDMVAHLSD 802 (832)
Q Consensus 740 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 802 (832)
-+|.++++..+.++++++++.++.|.+.++.-.-. ++.-..+=+.|..|++..+|.|...+
T Consensus 33 vSL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~--~~~~~~~i~~~~~i~l~~dG~V~f~~ 93 (229)
T 2yle_A 33 LSLEEILRLYNQPINEEQAWAVCYQCCGSLRAAAR--RRQPRHRVRSAAQIRVWRDGAVTLAP 93 (229)
T ss_dssp EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCSGGGEEEETTSCEEECC
T ss_pred ccHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhh--cccCCceecCCcceEEecCCceeccc
Confidence 47999999888899999999999999999887621 11111233456889999999998774
Done!