BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003302
(832 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O42832|SPB1_SCHPO AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spb1 PE=1 SV=2
Length = 802
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 307/844 (36%), Positives = 482/844 (57%), Gaps = 80/844 (9%)
Query: 1 MGKVK---GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWM 57
MGK + K RLDK+Y+LAKE GYRSRA++KLVQL+ K+SFL + ++DLCAAPGGW+
Sbjct: 1 MGKSQKKTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWL 60
Query: 58 QVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117
QVA + GSL++G+DL PI PI + +DIT +CR++++ ++ D+VLH
Sbjct: 61 QVASKTCKPGSLIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKA---DVVLH 117
Query: 118 DGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFE 177
DG+PNVG AW Q+A Q LV+ S+KLA +FL GTFVTKVFRS+DY+++L+ KQLF
Sbjct: 118 DGAPNVGSAWLQDAYGQAQLVLMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLFN 177
Query: 178 KVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEPRKVVD--VLRGTK 235
KVE KP +SR+ SAEI+++ YKAP K+DPR D + +F+ EP VD V K
Sbjct: 178 KVEATKPPSSRNVSAEIFVVCRGYKAPKKLDPRFTDPRTVFEEVQEPVTNVDAKVFHPEK 237
Query: 236 QKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF--GDPACSAIKDHELTTE 293
+KR R+GY D D TL K LA++F+ +N+P++ILG+ I F D C + + ++TTE
Sbjct: 238 RKRSREGYADDDYTLHKTVLASEFVTANDPIQILGTSAEIVFPKDDEECQRLYNLDVTTE 297
Query: 294 EVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVL 353
E+ C DL+VLGK++F+ +L+WR++I+ +K V E E D + R+
Sbjct: 298 EILLCCSDLQVLGKKEFRDILRWRLKIRDEMGIGKK--VEDEQKTVVEEIPEMDEEERLD 355
Query: 354 NEMEELKYAMDQRKKREKKLLAKKRAKDKARKATG----MQIDVMQDDYTDHELFSLSSI 409
E+++L A + KRE++ +++ ++ R G M I + + + LF L++
Sbjct: 356 QELQDLSEAERVKLKRERRKANQRKQREIVRMQMGMLAPMDIGLEHEAMGEDSLFGLATA 415
Query: 410 K--GKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLD 467
+ G K+L ++ +S DE + D + + DSD+ER ++LE LD
Sbjct: 416 EKHGLKEL-------ENGTLPVTESVDEEVSTDNE----VEYDSDDER----DRLEADLD 460
Query: 468 QAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQ------GDLD 521
Y +Y ++ S + + R KKA D DE+ + + +SD Q D
Sbjct: 461 SMYSDYTKRKAESDV-KYRVKKARGDLD-----DEEWNGIDNGTESDDSQIAETNFATPD 514
Query: 522 ANPLMVP-LDDGIRPTQEEITNK---WFSQEIFAEAVQNGDLGKLGSEDETQVDKQAEKH 577
+ L LD G T++ ++ K +F Q+IF + +++ D V+ +
Sbjct: 515 KDRLTTSLLDKG--STKDGLSRKARMFFDQDIF-DGIEDAD---------ADVEIMSMNR 562
Query: 578 SIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTK-- 635
+ +K + ++A+ S +Q + E+VP A DD + +S+++E + +
Sbjct: 563 AAIKKREAELASQNNDDGSKGDQSEDSNDHIEVVPVASAHDEDDDWNSDSDNDENNVEIV 622
Query: 636 -AEILACAKKML-RKKQREQILDDAYNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEI 692
AE + A+ + R+K + ++D+ YNR+ F +GLPDWFL+EE + +P+TKE +
Sbjct: 623 TAEAMTLAQDIASRRKSKADLIDEGYNRWSFQSKEGLPDWFLDEETTVNKPNKPITKEAV 682
Query: 693 AAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQ 752
A++ + K ++ARP KKV EA+ RKK +++L++V KKA IS+ D+++ K K+I +
Sbjct: 683 LALREKMKALNARPIKKVLEAQGRKKMRTIKRLQRVAKKAEGISESGDMTESEKAKEISR 742
Query: 753 LYKSAVPKRPKKE--YVVAK---KGVQVR--AGKGKV-LVDPRMKKDSRTHGSGKARKGG 804
L A +PK + VVAK KG++ R KGK +VD RMKKD R A+K
Sbjct: 743 LVSRATKSKPKAKPTLVVAKGPNKGLKSRPKGVKGKYKMVDSRMKKDLR------AQKRL 796
Query: 805 SKKG 808
+KKG
Sbjct: 797 AKKG 800
>sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=spb1 PE=3 SV=1
Length = 806
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 311/845 (36%), Positives = 473/845 (55%), Gaps = 110/845 (13%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK RLDK+YRLAKE GYR+RA++KLVQL+ K+ FL S +LDLCAAPG W QVA + +P
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMP 67
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
SL++G+DL PI PI ++ +QDIT +CRA ++ ++ D VLHDG+PNVG
Sbjct: 68 AQSLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKA---DTVLHDGAPNVGT 124
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
AW Q+A SQ LV++S+KLAT+FL GTFVTKVFRS+DY+ +L+ KQLF VE KP
Sbjct: 125 AWVQDAFSQAELVLESLKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFMSVEATKPP 184
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ--GSVEPRKVVDVLRGTKQKRHRDGY 243
+SR+ SAEI+++ YKAP +IDP+ LD K++F P V K+KR R+GY
Sbjct: 185 SSRNVSAEIFVVCRGYKAPKRIDPKFLDSKHVFAELADPTPNNEAKVFNPEKKKRKREGY 244
Query: 244 EDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF-----GDPACSAIKDHELTTEEVKAL 298
E+GD T K T+FI + +P+ ILGS ++F GD A + + TT+E++
Sbjct: 245 EEGDWTQFKEIPVTEFINTTDPIAILGSCNKLSFQQQPGGDLALATLDRLPETTDEIRNC 304
Query: 299 CDDLRVLGKQDFKHLLKWRMQIKKAFSSAEK-------ATVPASASAPTEGENEEDADNR 351
C+DL+VLGK++F++LL+WR+++++ F K + AP + E +
Sbjct: 305 CEDLKVLGKKEFRNLLRWRLKVREKFGLVVKKGQAKDDEAEEVAEIAPMDDELAIQEELL 364
Query: 352 VLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQ-----DDYTDHELFSL 406
L E E + ++RK+ E+K K+ + + T M I + Q +D T FSL
Sbjct: 365 RLKEKESARSKKERRKENERK--RKEIVRMQMHMTTPMDIGMEQLGPGGEDAT----FSL 418
Query: 407 ---------SSIKGKKDLAAVEYDDDDVNAAA--EDSEDERPNRDTQEHVSSDIDSDEER 455
+++ K+LA +E + ++ + +DS+DE
Sbjct: 419 KRAEKAGAAAAMASGKELAVIESESEESESETEYDDSDDE-------------------- 458
Query: 456 RKYDEQLEEVLDQAYENYVAKR--GGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDS 513
++LE LD YE Y ++ S ++ K+A+K Y E DE E + +
Sbjct: 459 ---GDRLERELDSLYEQYQERKEDKDSKLRAKKARKDY-------EADEWEGFSDSDKEG 508
Query: 514 DKDQGDLDANPLMVPLDDGIRPTQEEITNK---WFSQEIF--AEAVQNGDLGKLGSEDET 568
D+ D +A P VP + PT ++N +F Q+IF + V++ + G+ + T
Sbjct: 509 SDDEED-EAKP-NVP----VVPTNGALSNNAALFFDQDIFQGLDDVEDEEDEAEGTNNMT 562
Query: 569 QVDKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGADSSDDSSSDESE 628
+++ E+ E+ + K ++AA K +V E P DSSDD D E
Sbjct: 563 VANEREEQQEEEEEEQPK--SEAAPEK--KKKVKETANS-----KPSEDSSDDEYEDTDE 613
Query: 629 --------DEEVDTKAEILACAKKMLRKKQREQ-ILDDAYNRYMFDD-DGLPDWFLEEER 678
D ++ T AE +A A++M +++ Q + DD +NRY F D DGLP+WFL++E
Sbjct: 614 PRKKNGQLDIDIIT-AEAMALAQQMATGEKKSQDVFDDGFNRYAFRDVDGLPEWFLDDEN 672
Query: 679 RHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQ 738
+H + RP+TK AA++ +++ I+ARP KKV EAK RKK A +++EK+RKK+ +++D
Sbjct: 673 KHSKPNRPITKAAAAAIQEKWRAINARPIKKVMEAKGRKKFKAAQRIEKLRKKSALLADD 732
Query: 739 ADISDRSKRKQIEQLYKSAVPKRPKK--EYVVAKKGVQVRAG-----KGKV-LVDPRMKK 790
+S+R K + I ++ A K+PK+ + VVAK G + +G KGK +VD RMKK
Sbjct: 733 ETMSERDKAQAIARMMSRAAKKKPKQNVKLVVAKGGNRGISGRPKGVKGKYKIVDARMKK 792
Query: 791 DSRTH 795
D R
Sbjct: 793 DVRAQ 797
>sp|Q52C47|SPB1_MAGO7 AdoMet-dependent rRNA methyltransferase SPB1 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SPB1 PE=3
SV=2
Length = 865
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 300/864 (34%), Positives = 471/864 (54%), Gaps = 95/864 (10%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK RLDK+Y+LAKE GYR+RA++KL+QL+ K+ FL S +LDLCAAPG W QVA + +P
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEVMP 67
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
V SL++G+DL PI PI ++ + DIT +CRA +++ ++ D VLHDG+PNVG
Sbjct: 68 VSSLIVGVDLAPIKPIPKVITFQSDITTEKCRATIRQHLKTWKA---DTVLHDGAPNVGT 124
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
AW Q++ +Q L + ++KLAT+FL GTFVTKVFRS+DY+S+L+ QLF+KVE KP
Sbjct: 125 AWVQDSFNQAELTLQAMKLATEFLVEGGTFVTKVFRSKDYNSMLWVFNQLFKKVEATKPP 184
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ--GSVEPRKVVDVLRGTKQKRHRDGY 243
+SR+ SAEI+++ +KAP +IDP+ LD + +F P V + +KR RDGY
Sbjct: 185 SSRNVSAEIFVVCRGFKAPKRIDPKFLDPRAVFAELADPTPNNEAKVYKPEIKKRKRDGY 244
Query: 244 EDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF-----GDPACSAIKDHELTTEEVKAL 298
E+GD T K A +FI S +P+ ILGS ++ GD A + ++ TT+E++
Sbjct: 245 EEGDYTQYKELPAYEFIQSTDPIAILGSTNRLSLEQSKNGDVALAVLEKLPETTDEIRTC 304
Query: 299 CDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEE--------DADN 350
C DL+VLG+++FK LLKWR+ +++ K +V A E D +
Sbjct: 305 CADLKVLGRKEFKLLLKWRLAVREKLGFPTKKSVKKEEEAAAAVAAAEEVAKIESMDEEM 364
Query: 351 RVLNEMEELKYAMDQRKKREKKLLAKKRAKDKAR----KATGMQIDVMQDDYTDHE-LFS 405
R+ +E+E+LK +KKRE++ +++ KD R M I V Q + +F+
Sbjct: 365 RIQHELEKLKERNSTKKKRERRKENERKQKDIVRMQMHMVAPMDIGVEQAGPEGEDAMFA 424
Query: 406 LSSIKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEV 465
L +++ K D+ V A+ D++ +D + S ++D+E + ++LE
Sbjct: 425 LRAVE-KGDVMRRLAKGKMVVASEADAK-----KDRDSGIGSSGETDDESDEELDRLETE 478
Query: 466 LDQAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKDQGDLDAN-- 523
LD Y+ + ++ S + RAKKA Q GD DE+ S + D+ D+
Sbjct: 479 LDDMYDQFRERKAASDA-KYRAKKAR----QARNGDGDEEWEGVSDNEKADEISDDSELE 533
Query: 524 -----------------PLMVPLDDGIRPTQEEITNK----WFSQEIFAEAVQNGDL--- 559
L+ LD P+ +K +F+Q+IF E +GD+
Sbjct: 534 EESSGDSDDEDDTAPRKSLLTDLD--TTPSDNSGLSKRARAFFNQDIFKEL--DGDMDEP 589
Query: 560 ------GKLGSED-----ETQVDKQAEKHS------IPEKAKQKMANDAAGPKSTHNQVS 602
L ED E V K K + K K A A +
Sbjct: 590 MDEELRAALAGEDEDADMEDTVSKADSKKTKEKTADKKAAKKAKKAAQKAQQVKDDDSDD 649
Query: 603 EVEGDFEIVPAPGADSSDDS---SSDESEDEEVDTKAEILACAKKMLR-KKQREQILDDA 658
E +G FE+V + D +D + D D ++ T AE + A ++ +K ++DD
Sbjct: 650 ESDGGFEVVKSGKEDDWEDEDKRTKDGRLDIDIIT-AEAMTLAHQLATGQKSSHDVIDDG 708
Query: 659 YNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARK 717
+N++ F D +GLP+WFL++E +H + +P+TK AA+K + + +ARP KKV EAK RK
Sbjct: 709 FNKHAFKDREGLPEWFLDDETKHDKPQKPITKAAAAAIKEKMRAFNARPIKKVREAKGRK 768
Query: 718 KRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKK--EYVVAK---KG 772
K A ++LEK++KK++++ ++ ++++ K + I +L + A K+PK+ + VVAK +G
Sbjct: 769 KMKAAQRLEKLKKKSDLLVNEEGMTEKEKAESIAKLLRKATKKKPKQAVKVVVAKGANRG 828
Query: 773 VQVRAG--KGKV-LVDPRMKKDSR 793
++ R KG+ +VDPRMKK+ R
Sbjct: 829 IKGRPQGIKGRYKIVDPRMKKEMR 852
>sp|Q5RAS1|SPB1_PONAB pre-rRNA processing protein FTSJ3 OS=Pongo abelii GN=FTSJ3 PE=2
SV=1
Length = 841
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 291/877 (33%), Positives = 457/877 (52%), Gaps = 139/877 (15%)
Query: 2 GKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAV 61
GKV GK R DK+Y LAKE GYRSR+++KL+QL+ +F FL+ + A+LDLCAAPGGW+QVA
Sbjct: 5 GKV-GKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAA 63
Query: 62 QRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
+ +PV SL++G+DLVPI P+ V+L++DIT CR ++K ++ V D+VL+DG+P
Sbjct: 64 KFMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKV---DVVLNDGAP 120
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181
NVG +W +A SQ L + +++LA FLA G+F+TKVFRS+DY +L+ +QLF +V+
Sbjct: 121 NVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQA 180
Query: 182 DKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLF-QGSVEPRKVVDVLRGTKQKRHR 240
KP ASR SAEI+++ + AP K+D + D K+ F + V+ + V +++ TK+K
Sbjct: 181 TKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELV--TKKKPKA 238
Query: 241 DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCD 300
+GY +GD TL + TDF+ + NP++ L + I D + H TTE+++ C
Sbjct: 239 EGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDD---EELAQHPATTEDIRVCCQ 295
Query: 301 DLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPA-------------SASAPTEGENEED 347
D+RVLG+++ + LL WR ++++ + K A + T G E+
Sbjct: 296 DIRVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEDEGNEEDSTAGTTEQP 355
Query: 348 AD--------NRVLNEMEELKYA----------MDQRKKREKKLLAKKRAKDKARKATGM 389
+ N+ L EM+ + A +QRK+RE+ L G+
Sbjct: 356 SKEEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKM--------DLPGV 407
Query: 390 QIDVMQDDYTDHELFSLSSIKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDI 449
I D + +FSL +I+G++ L V D +AA+ + P D SD+
Sbjct: 408 SI----ADEGETGMFSLRTIRGQQLLEEVTQGD---MSAADTFLSDLPRDDI---YVSDV 457
Query: 450 DSDEERRKYDEQLEEVLDQAYENYVAKRGGSTMQ-RKRAKKAYAQEDQLSEGDEDEDTMH 508
+ D + D E RG ++ +KR + Q+
Sbjct: 458 EDD------GDDTSLDSDLDPEELAGVRGHQGLRDQKRVRLTEVQD-------------- 497
Query: 509 TSYDSDKDQGDLDANPLMVPLDDGIRPTQEEITNKWFSQEIFAEAVQNGD------LGKL 562
DK++ + + NPL+VPL++ QEE N WFS+ FA + D +L
Sbjct: 498 -----DKEEEEEEENPLLVPLEEKA-VLQEEQANLWFSKGSFAGIEDDADEALEISQAQL 551
Query: 563 GSEDETQVDKQAEKHSIPEKAKQKMANDA---AGPKSTH-----NQVSEVEGD------- 607
E + + +Q ++P K ++ + PK T + ++G+
Sbjct: 552 LFESQRKGRQQQLPQTLPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLKGEEKDGISD 611
Query: 608 ------------FEIVPAP----GADSSDDSS-----SDESEDEEVDTKAEILACAKKML 646
+E V G S DD D ++ +D + L
Sbjct: 612 SDSSSSSEEEESWEPVRGKKRSRGPKSDDDGFEIVPIEDPAKHRILDPEGLALGAVIASS 671
Query: 647 RKKQREQILDDAYNRYMFDDD--GLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDA 704
+K +R+ ++D+++NRY F++D LP+WF++EE++HR P+ K+E+ + +++EI+A
Sbjct: 672 KKAKRD-LIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPIGKKEMEHYRKRWREINA 730
Query: 705 RPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKK 764
RP KKVAEAKARKKR +++LE+ RKKA + + DIS+R K Q+ LYK A + K+
Sbjct: 731 RPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKR 790
Query: 765 E--YVVAKKGV--QVRAGKGKV----LVDPRMKKDSR 793
YVVAKKGV +VR G +VD RMKKD R
Sbjct: 791 HVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQR 827
>sp|Q6CV12|SPB1_KLULA AdoMet-dependent rRNA methyltransferase SPB1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SPB1 PE=3 SV=1
Length = 833
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 289/846 (34%), Positives = 446/846 (52%), Gaps = 86/846 (10%)
Query: 3 KVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGWMQVAV 61
K K RLDKYY LAKE GYR+R+S+K++Q++ K+ FL S V+DLCAAPG W QVA
Sbjct: 7 KKNSKGRLDKYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVAS 66
Query: 62 QRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
PV SL++G+D+VP+ + ++ + DIT +CR++++ M+ D VLHDG+P
Sbjct: 67 NLCPVNSLIIGVDIVPMKTMPNVITFQSDITTEDCRSKLRGYMKTWKA---DTVLHDGAP 123
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181
NVG +WAQ+A +Q+ L + ++KLA + L GTFVTK+FRS+DY+ +++ +QLFEKVE
Sbjct: 124 NVGLSWAQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIWVFQQLFEKVEA 183
Query: 182 DKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVE-PRKV-VDVLRGTKQKRH 239
KP ASR+ SAEI+++ +KAP K+DPRLLD K +F+ + P+ + V K+ R
Sbjct: 184 TKPPASRNVSAEIFVVCKNFKAPKKLDPRLLDPKEVFEELPDGPQNMEAKVFNPEKKVRK 243
Query: 240 RDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFG--DPACSAIKDHELTTEEVKA 297
R GYE+GD L + DF+ S +P+ +LG D +K + TT+E A
Sbjct: 244 RGGYEEGDYLLYHETGLMDFMKSEDPITMLGEYNKFIVDEEDHDWKIVKKLKQTTKEFLA 303
Query: 298 LCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEME 357
+DL+VLG++DFK +LKWR ++ E+ P P E + + + L E +
Sbjct: 304 CIEDLKVLGRKDFKMILKWRKAARELLGLDEEEEKPEIEETPLTEEEQIEKELNTLQEKQ 363
Query: 358 ELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSS--------- 408
L ++RKK E K K+ + + + I + + +F+L +
Sbjct: 364 RLSVKREKRKKNEMK--QKEIVRMQLNMINPVDIGIEAAELGRESIFNLKTAEKTGILDK 421
Query: 409 -IKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLD 467
KGK+ + D N A D+ D ++ +D +E + DE LE LD
Sbjct: 422 LAKGKRRMIF------DQNELAIDN-------DIHIDENAPLDDRDELAEADE-LESQLD 467
Query: 468 QAYENYVAKRGGSTMQRKRAKKAYAQ---------EDQLSEGDEDEDTMHTSYDSDKDQG 518
Y NY +R + RAK+A ED+ S+ + +E+T D D
Sbjct: 468 AMYSNY-KERKSERDAKFRAKQARESSEADNWNGFEDKQSDEENEEETKDYVDDDDNSDL 526
Query: 519 DLDA-----NPLMVPLDDGIRPTQEEITNK---WFSQEIFAEAVQNGDLGKLGSEDETQV 570
N L+ L R ++++K FS +F E V+ GK D V
Sbjct: 527 SDSDDDEAINQLIAKLKS--RENSSKLSSKARALFSDSLF-EGVEPDLPGKADLADSESV 583
Query: 571 DKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGADSSDDSSSDESEDE 630
+ + K++ N + + + S+ + DFEIV A D DS D SE+E
Sbjct: 584 G------DVKQLTKKRKLNPLPAEQISEAESSDEDSDFEIV-ANNEDGDVDSEYD-SEEE 635
Query: 631 EVDTK------------AEILACAKKM-LRKKQREQILDDAYNRYMFDD-DGLPDWFLEE 676
TK E + A ++ L K + ++++ +NRY F D + LP+WF+EE
Sbjct: 636 AKRTKQEKHSKDIDIATVEAMTLAHQLALGHKTKHDLIEEGFNRYSFRDMENLPEWFVEE 695
Query: 677 ERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVIS 736
E++H + +P+TKE A+K + K ++ARP KKVAEAKARKK A+ +LEK++KKA +I+
Sbjct: 696 EKQHSKINKPITKEAAMAIKDKLKALNARPIKKVAEAKARKKHRAVARLEKLKKKAGLIN 755
Query: 737 DQADISDRSKRKQIEQLYKSAVPK---RPKKEYVVA---KKGVQVR--AGKGKV-LVDPR 787
D +D S++ K ++I +L + K +PK VVA +G+ R KGK +VD
Sbjct: 756 DDSDKSEKDKAEEIAKLMRKVTKKAKQKPKVTVVVASGKNRGLSGRPKGVKGKYKMVDGV 815
Query: 788 MKKDSR 793
+K + R
Sbjct: 816 LKNEQR 821
>sp|P25582|SPB1_YEAST 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SPB1 PE=1 SV=2
Length = 841
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 265/824 (32%), Positives = 429/824 (52%), Gaps = 112/824 (13%)
Query: 1 MGKVKGKH---RLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGW 56
MGK + K+ RLD+YY LAKE GYR+R+S+K++Q++ K+ FL S V+DLCAAPG W
Sbjct: 1 MGKTQKKNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSW 60
Query: 57 MQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116
QVA + PV SL++G+D+VP+ P+ ++ + DIT +CR++++ M+ D VL
Sbjct: 61 CQVASKLCPVNSLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKA---DTVL 117
Query: 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF 176
HDG+PNVG W Q+A +Q+ L + ++KLA + L GTFVTK+FRS+DY+ +++ +QLF
Sbjct: 118 HDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLF 177
Query: 177 EKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEPRKVVD--VLRGT 234
EKVE KP ASR+ SAEI+++ +KAP ++DPRLLD K +F+ + ++ ++ +
Sbjct: 178 EKVEATKPPASRNVSAEIFVVCKGFKAPKRLDPRLLDPKEVFEELPDGQQNMESKIYNPE 237
Query: 235 KQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF--GDPACSAIKDHELTT 292
K+ R R GYE+GD L + DF+ + +P+ +LG + T D +K + TT
Sbjct: 238 KKVRKRQGYEEGDNLLYHETSILDFVRTEDPISMLGEMNKFTIDENDHEWKILKKLKQTT 297
Query: 293 EEVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASAS-APTEGENEEDADNR 351
+E ++ +DL+VLGK+DFK +L+WR ++ K P E + + D +
Sbjct: 298 DEFRSCIEDLKVLGKKDFKMILRWRKIAREILGIEVKDDAKTEIEVVPLTEEEQIEKDLQ 357
Query: 352 VLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSLSS--- 408
L E + L ++R+K E K K+ + + T I + LF+L +
Sbjct: 358 GLQEKQRLNVKRERRRKNEMK--QKELQRMQMNMITPTDIGIEAASLGKESLFNLKTAEK 415
Query: 409 -------IKGKKDLAAVE---------YDDDDV------------------NAAAEDSED 434
KGKK + + Y D+++ NA D +
Sbjct: 416 TGILNDLAKGKKRMIFTDDELAKDNDIYIDENIMIKDKDSAADADDLESELNAMYSDYKT 475
Query: 435 ERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQ- 493
R RD + D E E + GS +++ K Y +
Sbjct: 476 RRSERDAKFRAKQARGGDNE----------------EEWTGFNEGSLEKKEEEGKDYIED 519
Query: 494 -EDQLSEGDEDEDTMHTSYDS--DKDQGD--LDANPLMV---PLDDGIRPTQEEITNKWF 545
+D+ EGD D+D T+ S +GD L + M+ P+ + + P
Sbjct: 520 NDDEGVEGDSDDDEAITNLISKLKGQEGDHKLSSKARMIFNDPIFNNVEP---------- 569
Query: 546 SQEIFAEAVQNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVE 605
++ V +G + D ++++K+ KH E+ QK + +S+ +
Sbjct: 570 --DLPVNTVNDGIMSSESVGDISKLNKK-RKH---EEMHQKQDEADSSDESSSDDSD--- 620
Query: 606 GDFEIVPAPGADSSDDSSSDESEDEEVDTK------------AEILACAKKM-LRKKQRE 652
FEIV A DS D SE+E+ TK E + A ++ L +K +
Sbjct: 621 --FEIVANDNASEEFDSDYD-SEEEKNQTKKEKHSRDIDIATVEAMTLAHQLALGQKNKH 677
Query: 653 QILDDAYNRYMF-DDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVA 711
++D+ +NRY F D + LPDWFLE+E+ H + +P+TKE A+K + K ++ARP KKVA
Sbjct: 678 DLVDEGFNRYTFRDTENLPDWFLEDEKEHSKINKPITKEAAMAIKEKIKAMNARPIKKVA 737
Query: 712 EAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYK 755
EAKARK+ A+ +LEK++KKA +I+D +D +++ K ++I +L +
Sbjct: 738 EAKARKRMRAVARLEKIKKKAGLINDDSDKTEKDKAEEISRLMR 781
>sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SPB1 PE=3 SV=1
Length = 845
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 272/811 (33%), Positives = 434/811 (53%), Gaps = 90/811 (11%)
Query: 1 MGKVKGKH---RLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGW 56
MGK + KH RLD+YY LAKE GYR+R+S+K++Q++ K+ FL S V+DLCAAPG W
Sbjct: 1 MGKQQKKHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSW 60
Query: 57 MQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116
QVA Q P+ SL++G+D+VPI P+ ++ + DIT +CR+R++ M+ D VL
Sbjct: 61 CQVASQLCPINSLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKA---DTVL 117
Query: 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF 176
HDG+PNVG W Q+A +Q+ L + ++KLA + L GTFVTK+FRS+DY+++++ +QLF
Sbjct: 118 HDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLF 177
Query: 177 EKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ---GSVEPR-----KVV 228
EKVE KP ASR+ SAEI+++ +KAP K+DPRLLD K +F+ G E + K+
Sbjct: 178 EKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLLDPKEVFEELGGGNESKQNNEAKIF 237
Query: 229 DVLRGTKQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSA---- 284
+ + + Q R R GY++GD TL DFI ++P+ LGS+ P
Sbjct: 238 NPEKFSSQ-RQRQGYQEGDYTLFHTMPIMDFIKQDDPINQLGSLNKFDLPAPKDDDNDDD 296
Query: 285 --------IKDHELTTEEVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASA 336
+ +L T E+ DL+VLG+++FK +LK+R Q + +
Sbjct: 297 DHDHEWKILSKLKLCTPELLECIKDLKVLGRKEFKMILKFRKQARDILGIDKDEKEEEEE 356
Query: 337 SAPTEGENEEDADNRVLNEMEELKYAMDQRKKREKK----LLAKKRAKDKARKATGMQID 392
+ E E + + ++ E+++L Q+ KR KK L K+ +++ T M I
Sbjct: 357 NPKIEVEPLTE-EQKIDQELQDLINKQKQKAKRLKKNANELKQKEIIRNQMNMLTDMNIG 415
Query: 393 VMQDDYTDHELFSLSS----------IKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQ 442
+ LF+L + KGKK + ++D+++ ++D + D +
Sbjct: 416 IEAAQIGADSLFNLKTAEKTGQLDKLAKGKKKMI---FNDEEL------AKDNEIHIDEE 466
Query: 443 EHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQ-EDQLSEG- 500
E +D DS +E ++LE LD Y Y A++ RAK+A +D+ G
Sbjct: 467 EINDNDKDSADEL----DELENQLDDMYHQYQARKAERDANY-RAKQARGDADDEAWNGI 521
Query: 501 DEDEDTMHTSYDSDKDQGDLDANPLMVPL-----DDGIRPTQEEITNKWFSQEIFAEAVQ 555
+ED D + + D + + D + + L +G N + S IF E
Sbjct: 522 EEDNDDVESGKDYEMESESDDDDDEHIRLIAEKKSNG--SLSRTARNFFASDSIFNELSD 579
Query: 556 NGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPG 615
+ L ++ ++ + K E SI E+ ++ E E DFEIVP
Sbjct: 580 DVILEEIENKTKGSNGKMVE--SIQEQVANDNN------ENDDGDNDEEESDFEIVPNQK 631
Query: 616 ADSSDDSSSDESEDEEVDTKAEI--------LACAKKM-------LRKKQREQILDDAYN 660
+D DD S S+D+EV T + LA + M L +K + ++D+ N
Sbjct: 632 SDDDDDDESMNSDDDEVSTTTKSTTHQQKVDLATVEAMTLAHQVALGQKNKYDLIDEGIN 691
Query: 661 RYMF-DDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKR 719
RY F D D LPDWF+++E++H + I+P+TKE A+K + K+++ARP KKV EA++RKK
Sbjct: 692 RYSFRDKDNLPDWFIDDEKKHSKLIKPITKEAAIAIKEKQKQLNARPIKKVLEAQSRKKL 751
Query: 720 VAMRKLEKVRKKANVISDQADISDRSKRKQI 750
A+++LEK++KK+++I++ + S+R K +I
Sbjct: 752 RALKRLEKIKKKSDLINEDSGKSERDKADEI 782
>sp|Q6BNQ8|SPB1_DEBHA AdoMet-dependent rRNA methyltransferase SPB1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SPB1 PE=3 SV=2
Length = 831
Score = 344 bits (883), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 259/799 (32%), Positives = 426/799 (53%), Gaps = 80/799 (10%)
Query: 1 MGKVKGKH---RLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGW 56
MGK + K+ RLD+YY LAKE GYR+R+S+K++Q++ K+ FL S V+DLCAAPG W
Sbjct: 1 MGKTQKKNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSW 60
Query: 57 MQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116
QVA Q P+ SL++G+D+VPI + ++ + DIT +CR++++ M+ D VL
Sbjct: 61 CQVASQLCPINSLIIGVDIVPIKALPNCITFQSDITTEDCRSQLRGHMKTWKA---DTVL 117
Query: 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF 176
HDG+PNVG W Q+A +Q+ L + ++KLA + L GTFVTK+FRS+DY+++++ +QLF
Sbjct: 118 HDGAPNVGLGWVQDAFTQSHLTLQALKLAVENLNTGGTFVTKIFRSRDYNNLMWVFQQLF 177
Query: 177 EKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ--GSVEPRKVVDVLRGT 234
EKVE KP ASR+ SAEI+++ YK+P K+DPRLLD + +F+ + +
Sbjct: 178 EKVEATKPPASRNVSAEIFVVCKGYKSPKKMDPRLLDPREVFEELPTGPDNNEAKIFNPE 237
Query: 235 KQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSIT---FGDPACSAIKDHELT 291
K+ R R GYE+GD TL +FI + +P+ LG++ ++ D +K +L
Sbjct: 238 KKVRRRQGYEEGDYTLFHEMPLLEFIKNEDPINTLGTLNKLSEPPQDDHEWKILKKSKLC 297
Query: 292 TEEVKALCDDLRVLGKQDFKHLLKWRMQIKKAFS-SAEKATVPASASAPTEGENEEDADN 350
T E+ DL+VLG++DFKHLLK+R Q + A++ T TE D
Sbjct: 298 TPELLECIKDLKVLGRKDFKHLLKFRKQARDLLGLDAKEETQEIEVEPLTE-------DQ 350
Query: 351 RVLNEMEEL----KYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQDDYTDHELFSL 406
++ E++EL K + KK+ ++ K+ + + T M I + LF+L
Sbjct: 351 QIEKELQELTEKQKQKARKAKKQSNEIKQKEIQRSQMNMLTDMNIGIEAAQIGAESLFNL 410
Query: 407 SSI----------KGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERR 456
+ KGKK + ++D+++ + + DE + ++++ +
Sbjct: 411 KTAIKTGQLEKLSKGKKKMI---FNDEEIMKDNDINFDEEADANSEDEI----------- 456
Query: 457 KYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHTSYDSDKD 516
++LE LD Y +Y +R RAKK D EG E ++ D + +
Sbjct: 457 ---DELEAQLDDMYNSYQNRRAERDANY-RAKKLRGDVD--DEGWEGIESDKEGSDKETE 510
Query: 517 QGDLDANPLMVPLDDGIRPTQEEITNKWFSQEIFAEAVQNGDLGKLGSED--ETQVDKQA 574
D + DD + K S+ N G+LG E E K+A
Sbjct: 511 ANDYEMESESDSDDDEHIQRIADQRKKELSKNAKVFFASNSIFGELGDEALLEEMNKKEA 570
Query: 575 EKHSIPEKAKQKMANDAAG--------PKSTHNQVSEVEGDFEIVP-APGADSSDDSSSD 625
+ + + + AND + + N VS+ + DFEIVP AP + SD S +
Sbjct: 571 KTNQVTNENAVGHANDISNKPEQMEVDSSDSENDVSD-DSDFEIVPNAPDEELSDSDSDN 629
Query: 626 ESEDEEVDTKA------------EILACAKKM-LRKKQREQILDDAYNRYMF-DDDGLPD 671
E++ +KA E + A ++ L K + ++++ ++Y F D D LP+
Sbjct: 630 ENDVSRKYSKAKDQQSKVDIATVEAMTLAHQVALGHKNKHDLVNEGIHKYSFRDHDDLPE 689
Query: 672 WFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKK 731
WF+++E+R+ + ++P+TKE A+K + K+++ARP KKV EA+ RKK A+++LEK++KK
Sbjct: 690 WFVDDEKRNSKIVKPITKEAALAIKEKQKQLNARPIKKVLEAQGRKKLRALKRLEKLKKK 749
Query: 732 ANVISDQADISDRSKRKQI 750
+++I++ + S+R K +I
Sbjct: 750 SDMINEDSAKSERDKADEI 768
>sp|Q4WVH3|SPB1_ASPFU AdoMet-dependent rRNA methyltransferase spb1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=spb1 PE=3 SV=1
Length = 795
Score = 343 bits (880), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 206/513 (40%), Positives = 303/513 (59%), Gaps = 47/513 (9%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK RLDK+YRLAKE GYR+RA++KL+QL+ K+ FL S +LDLCAAPG W QVA + +P
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMP 67
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
S+++G+DL PI PI ++ + DIT +CRA +++ ++ D VLHDG+PNVG
Sbjct: 68 TQSIIIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKA---DTVLHDGAPNVGT 124
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
AW Q+A SQ LV+ S+KLAT+FL GTFVTKVFRS+DY+ +L+ KQLF VE KP
Sbjct: 125 AWVQDAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPP 184
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVE--PRKVVDVLRGTKQKRHRDGY 243
+SR+ SAEI+++ +KAP +IDP+ LD K++F + P V K+KR R+GY
Sbjct: 185 SSRNVSAEIFVVCRGFKAPKRIDPKFLDPKHVFAELTDSTPNNEARVFNPEKKKRKREGY 244
Query: 244 EDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF-----GDPACSAIKDHELTTEEVKAL 298
E+GD T K T+FI + +P+ ILG+ ++F GD A + + E TT+E++
Sbjct: 245 EEGDYTQFKEIPVTEFINTTDPIAILGTYNKLSFEQSPGGDLALATLNRLEETTDEIRTC 304
Query: 299 CDDLRVLGKQDFKHLLKWRMQIKKAFS-----SAEKATVPASAS--APTEGENEEDADNR 351
C+DL++LGK++F+ LL+WR+++++ F KA P + AP + E + +
Sbjct: 305 CEDLKILGKKEFRSLLRWRLKVREKFGLVVKKGQAKADEPEEVAEVAPMDEELAIQEELQ 364
Query: 352 VLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVMQ-----DDYTDHELFSL 406
L E E K ++RK+ EKK K+ + + T M I + Q DD T FSL
Sbjct: 365 RLQEKESAKRKKERRKENEKK--RKEIIRMQMHMTTPMDIGMEQLGPGGDDAT----FSL 418
Query: 407 SSIK--GKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEE 464
++ G +D+ A + DSED++ D E SD+E ++LE
Sbjct: 419 KRVERDGARDVIA----SGKLAEIESDSEDDQTESDYDE-------SDDE----GDRLER 463
Query: 465 VLDQAYENYVAKRG--GSTMQRKRAKKAYAQED 495
LD YE Y +R S ++ K+A+K Y E+
Sbjct: 464 ELDSLYEQYQERREDRDSKVRAKKARKDYEAEE 496
>sp|Q9P6V8|SPB1_NEUCR AdoMet-dependent rRNA methyltransferase spb1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=spb1 PE=3 SV=2
Length = 831
Score = 338 bits (866), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 197/502 (39%), Positives = 292/502 (58%), Gaps = 35/502 (6%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK RLDK+Y+LAKE GYR+RA++KL+QL+ K+ FL S LDLCAAPG W QV + +P
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCAETMP 67
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
S+++G+DL PI PI ++ + DIT +CRA ++ ++ D+VLHDG+PNVG
Sbjct: 68 TNSIIIGVDLAPIKPIPKVITFQSDITTEKCRATIRSHLKTWKA---DVVLHDGAPNVGT 124
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
AW Q++ +Q L + S+KLAT+FL GTFVTKVFRS+DY+S+L+ QLF KVE KP
Sbjct: 125 AWVQDSYNQAELALHSLKLATEFLIEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEATKPP 184
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ--GSVEPRKVVDVLRGTKQKRHRDGY 243
+SR+ SAEI+++ +KAP +IDP+LLD + +F+ P V +KR R+GY
Sbjct: 185 SSRNVSAEIFVVCRGFKAPKRIDPKLLDPRSVFEDVAGPAPNNEAKVYNPEVKKRKREGY 244
Query: 244 EDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF-----GDPACSAIKDHELTTEEVKAL 298
E+GD T K A++FI + +P+ ILG ++F GD A +A+ TTEE++
Sbjct: 245 EEGDYTQFKEISASEFINTVDPIAILGQYNKLSFEQPKNGDVALAALDKLPETTEEIRLC 304
Query: 299 CDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEE 358
C DL+VLG+++FK LLKWR+++++ F K T A+ D + R+ E++
Sbjct: 305 CADLKVLGRKEFKLLLKWRLKVREIFGFPSKKTQKAAVDEEVAVVENMDEELRIQEELQR 364
Query: 359 LKYAMDQRKKREKKLLAKKRAKDKARKATGMQ----IDVMQDD-YTDHELFSLSSIKGKK 413
+K +KKRE++ +K+ K+ R M I V Q+ + +F L +I
Sbjct: 365 IKEKETSKKKRERRRENEKKQKEIVRMQMNMTAPMDIGVEQEGPRGEGAMFRLKTI---- 420
Query: 414 DLAAVEYDDDDVNAAAEDSEDERPN--RDTQEHVSSDIDSDEERRKYDEQ---LEEVLDQ 468
D NAA + ++T++ D SD E + DE+ LEE LD
Sbjct: 421 ----------DQNAALNKIAKGKMAVIKETEKPKDYDFGSDGETDESDEEADRLEEELDN 470
Query: 469 AYENYVAKRGGSTMQRKRAKKA 490
Y+ Y +R + + RAKKA
Sbjct: 471 LYDQY-RERKAAADAKYRAKKA 491
>sp|Q5RJT2|SPB1_RAT pre-rRNA processing protein FTSJ3 OS=Rattus norvegicus GN=Ftsj3
PE=2 SV=1
Length = 829
Score = 309 bits (792), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 210/582 (36%), Positives = 318/582 (54%), Gaps = 87/582 (14%)
Query: 2 GKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAV 61
GKV GK R DK+Y LAKE GYRSR+++KL+QL+ +F FL+ + A+LDLCAAPGGW+QVA
Sbjct: 5 GKV-GKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAA 63
Query: 62 QRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
+ +PV SL++G+DLVPI P+ V+L++DIT CR ++K ++ V D+VL+DG+P
Sbjct: 64 KFMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKV---DVVLNDGAP 120
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181
NVG +W +A SQ L + +++LA FLA G F+TKVFRS+DY +L+ +QLF +V+
Sbjct: 121 NVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQA 180
Query: 182 DKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLF-QGSVEPRKVVDVLRGTKQKRHR 240
KP ASR SAEI+++ + AP K+D + D K+ F + V+ + V +++ TK+K
Sbjct: 181 TKPQASRHESAEIFVVCQGFLAPDKVDAKFFDPKFAFKEVEVQAKTVTELV--TKKKPKA 238
Query: 241 DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCD 300
+GY +GD TL + TDF+ + NP++ L + I+ D + H TTE+++A C
Sbjct: 239 EGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEISIDD---KELAQHPATTEDIRACCQ 295
Query: 301 DLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPA---------------------SASAP 339
D++VLG+++ + LL WR ++++ + K A AS
Sbjct: 296 DIKVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSEEEGDEEESAAETKQASEE 355
Query: 340 TEGENEEDADNRVLNEMEELKYA----------MDQRKKREKKLLAKKRAKDKARKATGM 389
E EE+ NR L EM+ + A +QRK+RE+ L G+
Sbjct: 356 EEEREEEEQLNRTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKM--------DLPGV 407
Query: 390 QIDVMQDDYTDHELFSLSSIKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDI 449
I D + +FSL +I+G++ L E D+NAA D P D +VS
Sbjct: 408 SI----ADEGETGMFSLRTIRGQQLLE--EVTQGDMNAADTFLSD-LPRDDI--YVSDAE 458
Query: 450 DSDEERRKYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDTMHT 509
D D D LE LD E R S Q+++ +AQ D
Sbjct: 459 DDD------DTSLESDLDP--EELAGVRTHSD-QKEQKSLQFAQVD-------------- 495
Query: 510 SYDSDKDQGDLDANPLMVPLDDGIRPTQEEITNKWFSQEIFA 551
DS +++G+ NPL+VPL++ QEE + WFS++ F+
Sbjct: 496 --DSKEEEGE---NPLLVPLEEKA-VLQEEQASLWFSKDGFS 531
>sp|P0CS78|SPB1_CRYNJ AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=SPB1 PE=3 SV=1
Length = 908
Score = 309 bits (792), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 175/441 (39%), Positives = 259/441 (58%), Gaps = 46/441 (10%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK RLDK+YRLAKE GYR+R+++KLV L+ K+ L + +DLCAAPGGW+QVA + +P
Sbjct: 9 GKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKYMP 68
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
GSL++G+DL I P+ + DIT P CR +++ M H +A DLVLHDG+PNVG
Sbjct: 69 KGSLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHM--HDWKA-DLVLHDGAPNVGS 125
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
AW Q+A +QN LV+ S+KLAT+FLA G+FVTKVFRSQDY+S+L+ QLF+ VE KP
Sbjct: 126 AWVQDAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPP 185
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ-------GSVEPRKV----------- 227
+SR+ SAEI+++ + AP IDP+ LD K++F+ EP
Sbjct: 186 SSRNVSAEIFVVCRDFIAPKHIDPKFLDPKHVFKDIASLPTSITEPTDTSIAPTSSSTAS 245
Query: 228 ---------------VDVLRGTKQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSV 272
+V K++RHR+GY +GD TL + A +F+ +P+ +LG++
Sbjct: 246 AAAAAARLAANSHAHSNVYAPEKKRRHREGYAEGDYTLHHTASAEEFVRGQDPVLLLGNM 305
Query: 273 TSITFGDPACSAIKDHELTTEEVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKA-- 330
I F + TT ++ A +DL+VLGK DFK L+KWR+ I+ KA
Sbjct: 306 NKIEFRNETEKGWLKSRHTTPDIIANFEDLKVLGKGDFKALMKWRLAIRLEIGLDVKADK 365
Query: 331 TVPASASAPTEGENEEDADNRVLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQ 390
T A+ E +EE+ ++ E+++L+ A + KRE+K +K+A++ + M
Sbjct: 366 TQDATEEVVVEPMDEEE---QITEELQKLQQAKLAKTKRERKRANEKKARELLKLQLNMT 422
Query: 391 I--DVMQDDYT---DHELFSL 406
+ D+ Q+D + E+F L
Sbjct: 423 VPDDLDQNDLALQGEEEIFDL 443
Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 24/228 (10%)
Query: 602 SEVEGD--FEIVPAPGADSSDDSSSDESEDEEVDTK---------AEILACAKKML-RKK 649
S +EGD FEIVP D + D+ + +EV K AE ++ A ++ RK
Sbjct: 682 STLEGDDDFEIVPQAPEDDGPEWDVDDEDQDEVKKKVIQDKGLLTAEAVSLATALVNRKT 741
Query: 650 QREQILDDAYNRY-MFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAK 708
++++D +NR + DGLP WFL++E + + P+TKE + A++A+ + +DARP K
Sbjct: 742 TADKLIDQGFNRLSAHNKDGLPTWFLDDESQFYKPNIPITKEAVDALRARQRALDARPIK 801
Query: 709 KVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLY---KSAVPKRPKKE 765
KVAEAK RKK A+ ++EK +KKA+ + + ++ D K +Q+ ++ K +K+
Sbjct: 802 KVAEAKGRKKMKAVARMEKAKKKADGVMESEEMGDGEKARQVRRMLARAAKGKEKAKEKK 861
Query: 766 YVVAK---KGVQVRAG--KGKV-LVDPRMKKDSRTHGSGKARKGGSKK 807
VVAK KGV+ R KGK +VD RM+K+ R + +K GSK+
Sbjct: 862 IVVAKGVNKGVKGRPTGVKGKYKIVDARMRKEVR--ALKRIKKAGSKR 907
>sp|P0CS79|SPB1_CRYNB AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=SPB1 PE=3 SV=1
Length = 908
Score = 309 bits (792), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 175/441 (39%), Positives = 259/441 (58%), Gaps = 46/441 (10%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK RLDK+YRLAKE GYR+R+++KLV L+ K+ L + +DLCAAPGGW+QVA + +P
Sbjct: 9 GKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKYMP 68
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
GSL++G+DL I P+ + DIT P CR +++ M H +A DLVLHDG+PNVG
Sbjct: 69 KGSLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHM--HDWKA-DLVLHDGAPNVGS 125
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
AW Q+A +QN LV+ S+KLAT+FLA G+FVTKVFRSQDY+S+L+ QLF+ VE KP
Sbjct: 126 AWVQDAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPP 185
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQ-------GSVEPRKV----------- 227
+SR+ SAEI+++ + AP IDP+ LD K++F+ EP
Sbjct: 186 SSRNVSAEIFVVCRDFIAPKHIDPKFLDPKHVFKDIASLPTSITEPTDTSIAPTSSSTAS 245
Query: 228 ---------------VDVLRGTKQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSV 272
+V K++RHR+GY +GD TL + A +F+ +P+ +LG++
Sbjct: 246 AAAAAARLAANSHAHSNVYAPEKKRRHREGYAEGDYTLHHTASAEEFVRGQDPVLLLGNM 305
Query: 273 TSITFGDPACSAIKDHELTTEEVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKA-- 330
I F + TT ++ A +DL+VLGK DFK L+KWR+ I+ KA
Sbjct: 306 NKIEFRNETEKGWLKSRHTTPDIIANFEDLKVLGKGDFKALMKWRLAIRLEIGLDVKADK 365
Query: 331 TVPASASAPTEGENEEDADNRVLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQ 390
T A+ E +EE+ ++ E+++L+ A + KRE+K +K+A++ + M
Sbjct: 366 TQDATEEVVVEPMDEEE---QITEELQKLQQAKLAKTKRERKRANEKKARELLKLQLNMT 422
Query: 391 I--DVMQDDYT---DHELFSL 406
+ D+ Q+D + E+F L
Sbjct: 423 VPDDLDQNDLALQGEEEIFDL 443
Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 24/228 (10%)
Query: 602 SEVEGD--FEIVPAPGADSSDDSSSDESEDEEVDTK---------AEILACAKKML-RKK 649
S +EGD FEIVP D + D+ + +EV K AE ++ A ++ RK
Sbjct: 682 STLEGDDDFEIVPQAPEDDGPEWDVDDEDQDEVKKKVIQDKGLLTAEAVSLATALVNRKT 741
Query: 650 QREQILDDAYNRY-MFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAK 708
++++D +NR + DGLP WFL++E + + P+TKE + A++A+ + +DARP K
Sbjct: 742 TADKLIDQGFNRLSAHNKDGLPTWFLDDESQFYKPNIPITKEAVDALRARQRALDARPIK 801
Query: 709 KVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLY---KSAVPKRPKKE 765
KVAEAK RKK A+ ++EK +KKA+ + + ++ D K +Q+ ++ K +K+
Sbjct: 802 KVAEAKGRKKMKAVARMEKAKKKADGVMESEEMGDGEKARQVRRMLARAAKGKEKAKEKK 861
Query: 766 YVVAK---KGVQVRAG--KGKV-LVDPRMKKDSRTHGSGKARKGGSKK 807
VVAK KGV+ R KGK +VD RM+K+ R + +K GSK+
Sbjct: 862 IVVAKGVNKGVKGRPTGVKGKYKIVDARMRKEVR--ALKRIKKAGSKR 907
>sp|Q5ZKM1|SPB1_CHICK pre-rRNA processing protein FTSJ3 OS=Gallus gallus GN=FTSJ3 PE=2
SV=2
Length = 832
Score = 306 bits (784), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 147/321 (45%), Positives = 218/321 (67%), Gaps = 9/321 (2%)
Query: 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP 65
GK R DK+Y LAKE G+RSR+++KL+QL+ KF FL+ + A+LDLCAAPGGW+QVA + +P
Sbjct: 8 GKSRRDKFYHLAKETGFRSRSAFKLLQLNRKFQFLQKARALLDLCAAPGGWLQVASKFMP 67
Query: 66 VGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125
V SLV+G+DLVPI PI V+L++DIT +CR ++K ++ V D+VL+DG+PNVG
Sbjct: 68 VSSLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKV---DVVLNDGAPNVGA 124
Query: 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPA 185
+W +A SQ L + ++KLA +FL G F+TKVFRS+DY +L+ +Q F KV+ KP
Sbjct: 125 SWVHDAYSQANLTLMALKLACEFLCKGGWFITKVFRSRDYQPLLWIFQQFFHKVQATKPQ 184
Query: 186 ASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLF-QGSVEPRKVVDVLRGTKQKRHRDGYE 244
ASR+ SAEI+++ Y+AP KID + D KY F + V + V +++ +K+K +GY
Sbjct: 185 ASRNESAEIFVVCQGYQAPDKIDSKFFDPKYAFKEVEVHAKSVSELV--SKKKPKAEGYA 242
Query: 245 DGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCDDLRV 304
DGDTTL DF+ + NP++ L IT GD +++H TTEE++ C D+RV
Sbjct: 243 DGDTTLYHRFTLMDFLKAPNPVDFLSKANEITLGD---GELENHSSTTEELRQCCKDIRV 299
Query: 305 LGKQDFKHLLKWRMQIKKAFS 325
LG+++ + LL WR ++++ +
Sbjct: 300 LGRKELRALLNWRTKLRRFLT 320
>sp|Q751U1|SPB1_ASHGO AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SPB1 PE=3 SV=2
Length = 830
Score = 305 bits (780), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 161/402 (40%), Positives = 249/402 (61%), Gaps = 21/402 (5%)
Query: 1 MGKVKGKH---RLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGW 56
MG+ + K+ RLD+YY LAKE GYR+R+S+K++Q++ KF FL S V+DLCAAPG W
Sbjct: 1 MGRTQKKNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSW 60
Query: 57 MQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116
QVA PV SL++G+D+VP+ P+ ++ + DIT +CR++++ M+ D VL
Sbjct: 61 CQVASNLCPVNSLIIGVDIVPMQPMPNVITFQSDITTEDCRSKLRGYMKTWKA---DTVL 117
Query: 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF 176
HDG+PNVG W Q+A +Q+ L + ++KLA + L GTFVTK+FRS+DY+ +++ +QLF
Sbjct: 118 HDGAPNVGLNWVQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLMWVFQQLF 177
Query: 177 EKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVE-PRKV-VDVLRGT 234
+KVE KP ASR+ SAEI+++ +KAP K+DPRLLD K +F+ + P+ + V
Sbjct: 178 DKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLLDPKEVFEELPDGPQNMQAKVYNPE 237
Query: 235 KQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF--GDPACSAIKDHELTT 292
K+ R RDGYE+GD L DF+ +P+++LG+ T D +K + TT
Sbjct: 238 KKTRKRDGYEEGDYLLYHTVPIMDFVKVEDPIQMLGTTNKFTLDKDDHEWKIVKKLKQTT 297
Query: 293 EEVKALCDDLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRV 352
E KA +DL+VLGK+DFK LL+WR ++ + P + P E + +
Sbjct: 298 PEFKACIEDLKVLGKKDFKMLLRWRKAARELLGLDKDEEQPEIETVPLTEEEQ------I 351
Query: 353 LNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQIDVM 394
E++E++ + +KKREK +K+ + K ++ T MQ+ ++
Sbjct: 352 EKELQEMQQKQNLKKKREK----RKQNEIKQKEITRMQMQMI 389
>sp|Q8IY81|SPB1_HUMAN pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1
SV=2
Length = 847
Score = 303 bits (777), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 200/585 (34%), Positives = 307/585 (52%), Gaps = 88/585 (15%)
Query: 2 GKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAV 61
GKV GK R DK+Y LAKE GYRSR+++KL+QL+ +F FL+ + A+LDLCAAPGGW+QVA
Sbjct: 5 GKV-GKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAA 63
Query: 62 QRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
+ +PV SL++G+DLVPI P+ V+L+QDIT CR ++K ++ V D+VL+DG+P
Sbjct: 64 KFMPVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKV---DVVLNDGAP 120
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181
NVG +W +A SQ L + +++LA FLA G+F+TKVFRS+DY +L+ +QLF +V+
Sbjct: 121 NVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQA 180
Query: 182 DKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLF-QGSVEPRKVVDVLRGTKQKRHR 240
KP ASR SAEI+++ + AP K+D + D K+ F + V+ + V +++ TK+K
Sbjct: 181 TKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELV--TKKKPKA 238
Query: 241 DGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCD 300
+GY +GD TL + TDF+ + NP++ L + I D + H TTE+++ C
Sbjct: 239 EGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDD---EELAQHPATTEDIRVCCQ 295
Query: 301 DLRVLGKQDFKHLLKWRMQIKKAFSSAEKATVPA-------------SASAPTEGENEED 347
D+RVLG+++ + LL WR ++++ + K A T G ++
Sbjct: 296 DIRVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEDEGDEEDSTAGTTKQP 355
Query: 348 AD-----------NRVLNEMEELKYA----------MDQRKKREKKLLAKKRAKDKARKA 386
+ N+ L EM+ + A +QRK+RE+ L
Sbjct: 356 SKEEEEEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKM--------DL 407
Query: 387 TGMQIDVMQDDYTDHELFSLSSIKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVS 446
G+ I D + +FSLS+I+G + L V D +AA+ + P D
Sbjct: 408 PGVSI----ADEGETGMFSLSTIRGHQLLEEVTQGD---MSAADTFLSDLPRDDI---YV 457
Query: 447 SDIDSDEERRKYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQEDQLSEGDEDEDT 506
SD++ D + D E RG +G D+
Sbjct: 458 SDVEDD------GDDTSLDSDLDPEELAGVRG-------------------HQGLRDQKR 492
Query: 507 MHTSYDSDKDQGDLDANPLMVPLDDGIRPTQEEITNKWFSQEIFA 551
M + D + + + NPL+VPL++ QEE N WFS+ FA
Sbjct: 493 MRLTEVQDDKEEEEEENPLLVPLEEKA-VLQEEQANLWFSKGSFA 536
>sp|Q6FX63|SPB1_CANGA AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SPB1 PE=3 SV=1
Length = 837
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 215/325 (66%), Gaps = 11/325 (3%)
Query: 1 MGKVKGKH---RLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGW 56
MGK + K+ RLD+YY LAKE GYR+R+S+K++Q++ KF FL S V+DLCAAPG W
Sbjct: 1 MGKTQKKNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSW 60
Query: 57 MQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116
QVA + PV SL++G+D+VP+ P+ ++ + DIT +CR+R++ M+ D VL
Sbjct: 61 CQVASKLCPVNSLIIGVDIVPMKPMPNVITFQSDITTEDCRSRLRGYMKTWKA---DTVL 117
Query: 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF 176
HDG+PNVG WAQ+A +Q+ L + ++KLA + L GTFVTK+FRS+DY+ +++ +QLF
Sbjct: 118 HDGAPNVGLGWAQDAFTQSHLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLF 177
Query: 177 EKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVE-PRKV-VDVLRGT 234
EKVE KP ASR+ SAEI+++ +KAP K+DPRLLD K +F+ + P+ + +
Sbjct: 178 EKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLLDPKEVFEELPDGPQNMEAKIYNPE 237
Query: 235 KQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITF--GDPACSAIKDHELTT 292
K+ R R GYE+GD L DF+ S +P+ +LG + T DP +K + TT
Sbjct: 238 KKVRKRQGYEEGDHLLYHECSVLDFVKSEDPITVLGEMNKFTVEQDDPEWKILKRLKQTT 297
Query: 293 EEVKALCDDLRVLGKQDFKHLLKWR 317
E A +DL+VLGK+DFK LLKWR
Sbjct: 298 NEFMACIEDLKVLGKKDFKMLLKWR 322
>sp|Q6C9Q1|SPB1_YARLI AdoMet-dependent rRNA methyltransferase SPB1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SPB1 PE=3 SV=1
Length = 850
Score = 293 bits (751), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 217/365 (59%), Gaps = 52/365 (14%)
Query: 1 MGKVKGKH---RLDKYYRLAKEHGYRSRASWKLVQLDSKFS-FLRSSHAVLDLCAAPGGW 56
MGK++ KH RLD YYRLAKE GYR+R+S+K++Q++ K+ FL S V+DLCAAPG W
Sbjct: 1 MGKIQKKHGKGRLDHYYRLAKEKGYRARSSFKIIQINQKYGKFLEKSKVVIDLCAAPGSW 60
Query: 57 MQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116
QVA Q PV SL++G D+VPI P+ ++ + DIT CR ++++ M+ D V+
Sbjct: 61 CQVASQLCPVNSLIIGCDIVPIKPLPNVITFQSDITTDHCRQQLRQYMKTWKA---DTVM 117
Query: 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF 176
HDG+PNVG AWAQ+A +Q+ LV+ S+KLA +FL GTFVTKVFRS+DY+++++ +Q F
Sbjct: 118 HDGAPNVGMAWAQDAFTQSELVLQSLKLAVEFLNKGGTFVTKVFRSKDYNNLMWVFQQFF 177
Query: 177 EKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLF----QGSVEPRKVVDVLR 232
EKVE KP +SR+ SAEI+++ +K+KAP KIDPRLLD KY+F QG+ V
Sbjct: 178 EKVEATKPPSSRNVSAEIFVVCLKFKAPKKIDPRLLDAKYVFEEVSQGN--NNNEAKVFN 235
Query: 233 GTKQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFG-------------- 278
++R R+GYE+G+ K DFI + P++ LG +T+
Sbjct: 236 PEVKRRKREGYEEGEYLQHKRLSILDFITDSTPIDNLGETNEMTWTPRSIKEGEVDEEEE 295
Query: 279 -------------------------DPACSAIKDHELTTEEVKALCDDLRVLGKQDFKHL 313
+ A + TT E+ DL+VLG+++F+ +
Sbjct: 296 KEKDKEARDERGNVQYVLDDKVYSDEDALKMVSKLPQTTPELLECLKDLKVLGRKEFRAI 355
Query: 314 LKWRM 318
LKWR+
Sbjct: 356 LKWRL 360
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 185/385 (48%), Gaps = 50/385 (12%)
Query: 443 EHVS------SDIDSDEERRKYDEQLEEVLDQAYENYVAKRGGSTMQRKRAKKAYAQEDQ 496
EHV+ D SD+E +++LE + + EN A+ S +QRK+A +
Sbjct: 470 EHVTLEEAERVDYGSDDEANGLEDELESMYTEYLENKAARTAKSVVQRKKANVETEEWFG 529
Query: 497 LSE---GDEDEDTMHTSYDSDKDQGDLDANPLMVPLDDGIRPTQEEITN--KWFSQEIFA 551
+S+ GDE + M D+D + D+ T + N +FS IF
Sbjct: 530 ISDKKDGDESDGEMSAD--------DVDMATIDDGEDEDDGKTARTLNNGNMFFSNPIFD 581
Query: 552 EAVQNG-----------DLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKSTHNQ 600
V DL + G++D +++K ++ + + +D+ +
Sbjct: 582 NLVNAAVAKTEAKPKALDLLEPGAKDLIELEKAKKRKYAKKNGLE--YSDSEDEEDDIVM 639
Query: 601 VSEVEGDFEIVPAPGADSSDDSSSDESEDEEVDTKAEILACAKKMLRKKQREQILDDAYN 660
++ + D +I G SDD + + ++ T A LA + + ++ DD YN
Sbjct: 640 ETQKQDDSDIEYVHGESDSDDEPNIDLVTDQAMTMAHQLATGQT-----NKHKLQDDGYN 694
Query: 661 RYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKR 719
RY F D DGLP WF ++E +H + +P+TKE + A+K + K ++ARP KKV EAK RKK
Sbjct: 695 RYSFRDLDGLPQWFQDDENKHNKLNKPITKEAVEALKQKMKTLNARPIKKVLEAKGRKKM 754
Query: 720 VAMRKLEKVRKKANVISDQADISDRSKRKQIEQLY-KSAVPKRPKKEYVVA------KKG 772
A+R+LE+++KK+ +I++ S++ K I +L K A P++ KK+ V KG
Sbjct: 755 RALRRLEQMKKKSELINEDGARSEKEKADDISKLMRKLAKPQKSKKKTVTVVYAGGKNKG 814
Query: 773 VQVR----AGKGKVLVDPRMKKDSR 793
+ R GK K +VD MKK+ R
Sbjct: 815 IAGRPRGVTGKYK-MVDGTMKKEQR 838
>sp|Q8TR92|RLME_METAC Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rlmE PE=3 SV=1
Length = 272
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 128/215 (59%), Gaps = 7/215 (3%)
Query: 9 RLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGS 68
R D YY AKE GYRSRAS+KL Q++ K + ++ +V+DL AAPGGW+QVA Q G
Sbjct: 5 RRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQLS--GG 62
Query: 69 LVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128
VLG+DL IAPI G +++ DI + +KK++ G + D+VL D +PN+ G W+
Sbjct: 63 KVLGVDLQRIAPIEGVETIQGDIN---ADSTIKKIIRAVGEKGADVVLCDAAPNLSGNWS 119
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188
+ L +++ A + L PKG FV KVF+ ++ L ++ F V+ P ASR
Sbjct: 120 YDHARSIELTTSALECAKKILKPKGNFVVKVFQGDMFNDYLEKVRDNFVHVKAYSPQASR 179
Query: 189 SASAEIYLLGIKY-KAPA-KIDPRLLDVKYLFQGS 221
S SAEIY++G K+ AP + D ++D++ L G
Sbjct: 180 SQSAEIYVIGKKFLTAPLRRGDKFVVDIEKLGSGG 214
>sp|Q58771|RLME_METJA Ribosomal RNA large subunit methyltransferase E
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rlmE PE=3
SV=1
Length = 245
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 117/193 (60%), Gaps = 3/193 (1%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YY+LAK+ YRSRAS+KL+QL+ KF+ ++ VLDL APGGWMQVA + V V
Sbjct: 15 DFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVAREIVGDKGFV 74
Query: 71 LGLDLVPIAPIR--GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128
+G+DL P+ P V+++ D T E ++++++ + + D+V+ D SPN+ G W
Sbjct: 75 IGIDLQPVKPFEYDNVVAIKGDFTLEENLNKIRELI-PNDEKKVDVVISDASPNISGYWD 133
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188
+ LV ++++AT+ L +G FV KVF + +K+ FEKV + KP ASR
Sbjct: 134 IDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVNLVKKYFEKVYITKPQASR 193
Query: 189 SASAEIYLLGIKY 201
SAE+Y++ +Y
Sbjct: 194 KESAEVYVIAKRY 206
>sp|Q8PUP4|RLME_METMA Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=rlmE PE=3 SV=1
Length = 268
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 128/213 (60%), Gaps = 7/213 (3%)
Query: 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV 66
+ R D YY AKE GYRSRAS+KL Q++ K + ++ +V+DL AAPGGW+QVA Q
Sbjct: 3 RDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQLS-- 60
Query: 67 GSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA 126
G VLG+DL I PI G +++ DI + +KK+++ G + D+VL D +PN+ G
Sbjct: 61 GGKVLGVDLQRIDPIEGVETIQGDIN---AESTIKKIIKIVGEKGADVVLCDAAPNLSGN 117
Query: 127 WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAA 186
W+ + L +++ A + L PKG F KVF+ ++ L ++ F +V+ P A
Sbjct: 118 WSYDHARSIELATSALECAKKILKPKGNFAVKVFQGDMFNDYLDEVRNNFVRVKAYSPQA 177
Query: 187 SRSASAEIYLLGIKY-KAPA-KIDPRLLDVKYL 217
SRS SAEIY++G K+ AP K D ++D++ L
Sbjct: 178 SRSQSAEIYIIGKKFLTAPLRKGDKFVVDIEKL 210
>sp|A6UUK5|RLME_META3 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rlmE PE=3
SV=1
Length = 269
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 111/193 (57%), Gaps = 6/193 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YY+LAK++ YRSRAS+KL+QL+ KF + V+DL APGGW+Q + V V
Sbjct: 15 DFYYKLAKQNHYRSRASYKLLQLNEKFEIIYEGDNVVDLGCAPGGWLQASYDLVGEDGFV 74
Query: 71 LGLDLVPIAPIR--GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128
+G+DL + P+R V+++ D+TK E ++ +M D+V+ D SPN+ G W
Sbjct: 75 IGVDLQKVKPLREENIVAIQGDMTKKETINKIIDLMPSKA----DVVICDASPNISGVWE 130
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188
+ L + ++ T L G FV KVF+ + + L + F+KV+ KP ASR
Sbjct: 131 VDHSRSIELSLMALIATTHLLRKNGNFVVKVFQGSLFDQYVQLLTKYFKKVQTTKPKASR 190
Query: 189 SASAEIYLLGIKY 201
S SAE+Y++G K+
Sbjct: 191 SVSAEVYVIGKKF 203
>sp|P38238|TRM7_YEAST tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRM7 PE=1 SV=1
Length = 310
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 128/235 (54%), Gaps = 17/235 (7%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHA--VLDLCAAPGGWMQ 58
MGK K + D YYR AKE GYR+R+++KL+QL+ +F FL + V+DLCAAPG W Q
Sbjct: 1 MGK-SSKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQ 59
Query: 59 VAVQRVPVGSL--------VLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVR 110
V +++ S ++ +DL P++PI +L+ DIT P+ AR+ K+ G
Sbjct: 60 VLSRKLFDESPSSDKEDRKIVSVDLQPMSPIPHVTTLQADITHPKTLARILKLF---GNE 116
Query: 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLY 170
D V DG+P+V G + Q L++ +++L L GTFV K+FR +D +
Sbjct: 117 KADFVCSDGAPDVTGLHDLDEYVQQQLIMSALQLTACILKKGGTFVAKIFRGRDIDMLYS 176
Query: 171 CLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRL---LDVKYLFQGSV 222
L LF+K+ KP +SR S E +++ + Y P+ P+L V FQG
Sbjct: 177 QLGYLFDKIVCAKPRSSRGTSLEAFIVCLGYNPPSNWTPKLDVNTSVDEFFQGCF 231
>sp|O36015|TRM7_SCHPO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F10.03c PE=3 SV=1
Length = 285
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 14/221 (6%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MG+ K + D YYRLAKE G+R+R+++KL+QL+ +F+ + V+DLCAAPG W QV
Sbjct: 1 MGR-SSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVL 59
Query: 61 VQRVPVG----------SLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVR 110
+ + +++ +DL P+API G +L+ DIT P + ++ G
Sbjct: 60 SRELLKNIDTSIAADEKPMIVAVDLQPMAPIDGVCTLQLDITHPN---TLSIILSHFGNE 116
Query: 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLY 170
DLV+ DG+P+V G + Q +++ + LA L P G FV K+FR +D S +
Sbjct: 117 PADLVVSDGAPDVTGLHDLDEYIQAQILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYS 176
Query: 171 CLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRL 211
L+ +F KV KP +SR++S E +++ + P+ P L
Sbjct: 177 QLRLMFRKVSCAKPRSSRASSIESFVVCEDFNPPSNFQPDL 217
>sp|Q466Q1|RLME_METBF Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=rlmE PE=3 SV=1
Length = 263
Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 125/211 (59%), Gaps = 7/211 (3%)
Query: 9 RLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGS 68
R D YYR AKE GYRSRAS+KL Q++ + + +V+DL AAPGGW+QVA + G
Sbjct: 5 RRDYYYRQAKEEGYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQVAKELS--GG 62
Query: 69 LVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128
VLG+DL I PI G +++ +I + ++K+++ G + D+VL D +PN+ G W+
Sbjct: 63 KVLGVDLQRIVPIEGVETIQGNIN---ADSTIQKIIKTVGAKGADVVLCDAAPNLSGNWS 119
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188
+ L +++ A + L PKG FV KVF+ ++ + ++ F + P ASR
Sbjct: 120 YDHARSIELATSALECAKKILKPKGNFVVKVFQGDMFNDYMQKVRDNFVRTMAYSPKASR 179
Query: 189 SASAEIYLLGIKY-KAPA-KIDPRLLDVKYL 217
S SAEIY++G K+ AP K D ++D++ L
Sbjct: 180 SQSAEIYVIGKKFLTAPLRKGDKFVVDIEKL 210
>sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3
Length = 337
Score = 139 bits (350), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 127/215 (59%), Gaps = 9/215 (4%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGK R D YYRLAKE+ +R+R+++KL+Q+D +F L+ +DLCAAPG W QV
Sbjct: 1 MGKTSRDKR-DIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVL 59
Query: 61 VQRV---PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117
+R+ + ++ +DL P+API G + L+ DIT + +V++ D+V+
Sbjct: 60 SKRLYEEDQEAKIVAIDLQPMAPIPGVIQLQGDITSVD---TANQVIKHFSGEKSDIVIC 116
Query: 118 DGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYC-LKQLF 176
DG+P+V G + + Q L++ + + + L G F+ K+FRS++ SS+LY +K+ F
Sbjct: 117 DGAPDVTGIHSLDEFMQAELILAAFNITSHVLKEGGNFLAKIFRSRN-SSLLYAQMKKYF 175
Query: 177 EKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRL 211
+KV + KP +SR +S E ++L + Y P P +
Sbjct: 176 KKVYLAKPRSSRQSSCEAFVLCLDYSPPEGFVPTM 210
>sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1
Length = 270
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 126/219 (57%), Gaps = 11/219 (5%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MGK K + D YYR AKE G+R+R+++KL+Q+D ++ V+DLCAAPG W QV
Sbjct: 1 MGK-SSKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVL 59
Query: 61 VQRV------PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114
+R+ P +V +DL +AP++G V ++ DITK E K+++ DL
Sbjct: 60 SRRIYGDGKDPDVKIV-AVDLQEMAPLKGVVQIKGDITKYETS---KQIISHFDGSLADL 115
Query: 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174
++ DG+P+V G + Q+ L++ ++ + T L GTFV K+F+ D S + +K
Sbjct: 116 IISDGAPDVTGLHDIDFYGQSQLILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQMKL 175
Query: 175 LFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLD 213
FE V KP++SR +S E ++L Y+ P +P+++D
Sbjct: 176 FFEHVSFVKPSSSRESSLENFILCRNYQPPLNYNPKIID 214
>sp|A0B8A1|RLME_METTP Ribosomal RNA large subunit methyltransferase E OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=rlmE PE=3 SV=1
Length = 255
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 7/197 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YYR AKE GYR+R+++KL Q++ KF +R V+DL AAPGGW+QVA R G +V
Sbjct: 7 DHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQVA--RELSGGIV 64
Query: 71 LGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQE 130
+G+DL I P+ G V+++ DITK E ++ + D+V+ D +PN+ G W +
Sbjct: 65 VGVDLERIEPLEGIVTIQGDITKEETLEQIAAALGGQA----DVVISDAAPNLSGIWDVD 120
Query: 131 AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSA 190
L ++++A + L P G+F+ KVF+ ++ L +K+ F V P ASR
Sbjct: 121 HARSIDLSRAALRIAKRLLRPGGSFLVKVFQGDMFNDYLEEVKREFSSVHAYTPPASRKE 180
Query: 191 SAEIYLLGIK-YKAPAK 206
SAEIY++G K AP +
Sbjct: 181 SAEIYVIGKKLLSAPVR 197
>sp|Q54NX0|SPB1_DICDI Putative rRNA methyltransferase OS=Dictyostelium discoideum GN=fsjC
PE=3 SV=1
Length = 833
Score = 136 bits (343), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Query: 640 ACAKKMLRKKQREQILDDAYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQF 699
A + ++RKK R+ ++DD++N+Y F+D GLP+WF ++E RH +A P+TKE + ++ +
Sbjct: 649 ALGEFLIRKKSRQDLIDDSFNKYAFNDTGLPNWFTDDENRHNKAQTPLTKEMVDEIRRKI 708
Query: 700 KEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVP 759
KEID RP KK+AEAKARKK +K+EK R KA+ I D ++S+R K K IE+LY
Sbjct: 709 KEIDDRPIKKIAEAKARKKYRLGKKMEKTRDKASSIVDNPEMSNREKSKAIEKLYSGTDK 768
Query: 760 K--RPKKEYVVAKKGVQVRAGKGKV-LVDPRMKKDSRTH 795
K +PKK ++AKK G GK +VD RMKKD R
Sbjct: 769 KNMKPKKIIMIAKKSKTAGGGTGKYKIVDKRMKKDLRAQ 807
>sp|Q3SJR5|RLME_THIDA Ribosomal RNA large subunit methyltransferase E OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=rlmE PE=3 SV=1
Length = 220
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 119/202 (58%), Gaps = 6/202 (2%)
Query: 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV 66
+H D Y + A++ G+RSRA++KL+++DS+ L V+DL AAPG W QVAVQ++
Sbjct: 17 EHVTDAYVKKAQQDGFRSRAAYKLLEIDSRDHLLHPGMTVVDLGAAPGSWCQVAVQKMKR 76
Query: 67 GSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA 126
VL +DL+P+AP+ G +L+ D T P+ A ++ ++ V DLVL D +PN+ G
Sbjct: 77 QGRVLAIDLLPVAPLPGVEALQGDFTAPDTLAWLENTLQAARV---DLVLSDMAPNMSGV 133
Query: 127 WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAA 186
++ L ++ A +L P G F+ KVF+ + +++ F++V + KP A
Sbjct: 134 MLRDQARHYELCELALDFAVNWLKPDGAFLVKVFQGSGFEDFRNAMRRAFDQVVIRKPDA 193
Query: 187 SRSASAEIYLLGIKYKAPAKID 208
SR S+E+YLLG + P K++
Sbjct: 194 SRDRSSEVYLLG---RRPVKLE 212
>sp|Q47HI2|RLME_DECAR Ribosomal RNA large subunit methyltransferase E OS=Dechloromonas
aromatica (strain RCB) GN=rlmE PE=3 SV=1
Length = 205
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 116/196 (59%), Gaps = 11/196 (5%)
Query: 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV 66
+H D Y +LA++ G+RSRA++KL+++D K L+ V+DL A PGGW QVAV+RV
Sbjct: 13 EHINDTYVQLARKEGWRSRAAFKLMEMDDKDKLLKHGEVVVDLGATPGGWSQVAVKRVGD 72
Query: 67 GSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA 126
G LV LDL+ + PI G ++ D + E ++++ E+ G R LV+ D +PN+ G
Sbjct: 73 GGLVFALDLLEMEPIHGVHFIQGDFREDEV---LQQLEEQLGERRVGLVMSDMAPNMSGV 129
Query: 127 WAQEAMSQNALVIDSVKLATQF----LAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182
+ A ++ +L +F L P+G F+ KVF+ DY + L +++ F+ V V
Sbjct: 130 ----PLVDQARIMHLAELGLEFSRVHLKPEGAFLVKVFQGTDYETFLKQMRETFKTVAVR 185
Query: 183 KPAASRSASAEIYLLG 198
KP ASR S E+YLLG
Sbjct: 186 KPDASRDRSPELYLLG 201
>sp|Q5FNQ1|RLME_GLUOX Ribosomal RNA large subunit methyltransferase E OS=Gluconobacter
oxydans (strain 621H) GN=rlmE PE=3 SV=1
Length = 268
Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 6/192 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D Y A++ G+RSRA++KL+++D +F + ++DL AAPGGW QVAV+R V
Sbjct: 72 DPYVAAARKQGWRSRAAFKLIEIDDRFKLIGEGTRIIDLGAAPGGWTQVAVKR--GAKHV 129
Query: 71 LGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQE 130
+GLDL+P+ P+ GA +E D T PE R+K ++ DLV+ D +PN G A +
Sbjct: 130 VGLDLLPVDPVAGAEIIEGDFTDPEMPDRLKDMLGGPA----DLVMSDMAPNTTGHAATD 185
Query: 131 AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSA 190
M L ++ A Q LA G+F+ KVF+ +L +K F V+ KP ASR
Sbjct: 186 HMRIMGLAEGALDFAFQVLAEGGSFIAKVFQGGSEKDMLALMKTAFSSVKHVKPPASRKE 245
Query: 191 SAEIYLLGIKYK 202
S+E+Y++ ++
Sbjct: 246 SSELYVIATGFR 257
>sp|Q12WR3|RLME_METBU Ribosomal RNA large subunit methyltransferase E OS=Methanococcoides
burtonii (strain DSM 6242) GN=rlmE PE=3 SV=1
Length = 267
Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 119/206 (57%), Gaps = 6/206 (2%)
Query: 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV 66
+ R D YY AK+ GYRSRA++KL Q++ K ++ ++DL AAPGGW++VA +++
Sbjct: 3 RDRRDTYYWRAKDEGYRSRAAYKLFQINEKHEVIKEDDTIVDLGAAPGGWLEVA-KKISG 61
Query: 67 GSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA 126
G +V G+DL I I G +++ DIT E +KK++E G D+V+ D +PN+ G
Sbjct: 62 GKIV-GVDLRRIKEIEGVETIKGDITSDET---IKKIIELVGEGGADVVICDAAPNLSGN 117
Query: 127 WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAA 186
W+ + L +++ A + L PKG F+ KVF+ + + +++ F P A
Sbjct: 118 WSLDHARSIDLTTSALECAKKILKPKGHFIVKVFQGDMFKEYMDKVRESFTYTRAFSPKA 177
Query: 187 SRSASAEIYLLGIK-YKAPAKIDPRL 211
SR SAEIY++G K AP KID +
Sbjct: 178 SRPESAEIYVIGKKLLTAPLKIDDKF 203
>sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Homo sapiens GN=FTSJ1 PE=1 SV=2
Length = 329
Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 123/213 (57%), Gaps = 6/213 (2%)
Query: 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVA 60
MG+ K + D YYRLAKE+G+R+R+++KL+QLD +F + +DLCAAPG W QV
Sbjct: 1 MGRTS-KDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVL 59
Query: 61 VQRV-PVGS-LVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118
Q++ GS V+ +DL +AP+ G V ++ DIT+ + K++++ DLV+ D
Sbjct: 60 SQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQ---LSTAKEIIQHFKGCPADLVVCD 116
Query: 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEK 178
G+P+V G + Q L++ ++ +AT L P G FV K+FR +D + + L+ F
Sbjct: 117 GAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSS 176
Query: 179 VEVDKPAASRSASAEIYLLGIKYKAPAKIDPRL 211
V KP +SR++S E + + Y P P L
Sbjct: 177 VLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDL 209
>sp|A6VJR0|RLME_METM7 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=rlmE PE=3
SV=1
Length = 258
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 109/193 (56%), Gaps = 6/193 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YY LAK+ YRSRA++KL QL+ KF+ ++ + V+DL APGGW+Q A V +
Sbjct: 15 DHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVGEKGFI 74
Query: 71 LGLDLVPIAPI--RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128
+G+DL + P+ ++++ D+TK E + K ++ E D+++ D SPN+ G W
Sbjct: 75 VGIDLQTVKPLPYENVIAIKGDMTKEEILKQAKDLLPEKP----DVIICDASPNISGVWD 130
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188
+ L ++ AT+ L G FV KVF+ + + + + F+K KP ASR
Sbjct: 131 VDHARSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAFTTKPRASR 190
Query: 189 SASAEIYLLGIKY 201
SAE+Y++G ++
Sbjct: 191 DESAEVYVIGKRF 203
>sp|Q6LZL8|RLME_METMP Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain S2 / LL) GN=rlmE PE=3 SV=1
Length = 258
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 109/193 (56%), Gaps = 6/193 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YY LAK YRSRA++KL QL+ KF+ ++ + V+DL APGGW+Q A V +
Sbjct: 15 DHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVGEDGFI 74
Query: 71 LGLDLVPIAPIR--GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128
+G+DL + P+ ++++ D+TK E + K ++ E D+++ D SPN+ G W
Sbjct: 75 VGIDLQTVKPLPHDNIIAIKGDMTKEEILKQAKDLLPEKP----DVIICDASPNISGVWD 130
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188
+ + L ++ AT+ L G FV KVF+ + + + + F+K KP ASR
Sbjct: 131 VDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAFTTKPRASR 190
Query: 189 SASAEIYLLGIKY 201
SAE+Y++G ++
Sbjct: 191 DESAEVYVIGKRF 203
>sp|Q0W1F9|RLME_UNCMA Ribosomal RNA large subunit methyltransferase E OS=Uncultured
methanogenic archaeon RC-I GN=rlmE PE=3 SV=1
Length = 256
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 110/188 (58%), Gaps = 6/188 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YY AK+ GYRSRAS+KL ++ K ++ V+DL AAPGGW+QVA + + G V
Sbjct: 7 DHYYNKAKQMGYRSRASFKLQFINKKHHIIKKGDTVVDLGAAPGGWLQVA-KELNGGGKV 65
Query: 71 LGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQE 130
+G+DL I PI G +++ D+T PE +AR+ ++++E D V+ D +PN+ G WA +
Sbjct: 66 IGVDLQRIEPIEGVETIKGDMTSPETQARIFEIVDE-----VDTVICDAAPNLSGNWALD 120
Query: 131 AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSA 190
L ++ +AT+ L G FV KVF+ Y + + + + F K ASR
Sbjct: 121 HARSIDLATVALDVATKLLKKGGNFVVKVFQGDLYENYVKEVGKRFSYATTYKSQASRQQ 180
Query: 191 SAEIYLLG 198
SAEIY++G
Sbjct: 181 SAEIYVIG 188
>sp|O28228|RLME_ARCFU Ribosomal RNA large subunit methyltransferase E OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rlmE PE=3 SV=1
Length = 191
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 8/196 (4%)
Query: 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV 66
K R D YY AK+ GYRSRA++KL+Q++ F +R VLDL A PGGW QVA +
Sbjct: 2 KDRQDYYYWKAKKEGYRSRAAYKLLQMNRTFKLIREGDLVLDLGATPGGWSQVAAL---L 58
Query: 67 GSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA 126
G+ V+ +D+ P+ P+ + DIT PE +++++ ++ D+V+ D SP + G
Sbjct: 59 GARVVAVDINPMKPLENVTFIRGDITLPETLEKIREISPDY-----DVVMSDASPKISGK 113
Query: 127 WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAA 186
W + + L S +A + L P G FV KVF+ ++ LK F + P A
Sbjct: 114 WTIDHLRSIDLARASFSIAKEVLKPGGNFVVKVFQGEEIQKFFNELKPHFRFKKFHSPQA 173
Query: 187 SRSASAEIYLLGIKYK 202
SR SAE+Y +G +++
Sbjct: 174 SRKRSAEVYFIGKRFR 189
>sp|A4FYM2|RLME_METM5 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=rlmE PE=3
SV=1
Length = 258
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 109/193 (56%), Gaps = 6/193 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YY LAK+ YRSRA++KL QL+ KF+ ++ + V+DL APGGW+Q A V +
Sbjct: 15 DHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVGDKGFI 74
Query: 71 LGLDLVPIAPI--RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128
+G+DL + P+ ++++ D+TK E + + ++ E D+++ D SPN+ G W
Sbjct: 75 VGIDLQTVKPLPYENVIAIKGDMTKEEILKQARDLLPEKP----DVIICDASPNISGVWD 130
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188
+ L ++ AT+ L G FV KVF+ + + + + F+K KP ASR
Sbjct: 131 VDHARSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAFTTKPRASR 190
Query: 189 SASAEIYLLGIKY 201
SAE+Y++G ++
Sbjct: 191 DESAEVYVIGKRF 203
>sp|Q0BT08|RLME_GRABC Ribosomal RNA large subunit methyltransferase E OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rlmE
PE=3 SV=1
Length = 230
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 113/192 (58%), Gaps = 6/192 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D Y AK G+RSRA++KL++LD KF + V+DL AAPGGW QVA++R ++V
Sbjct: 39 DPYVAAAKAQGWRSRAAFKLIELDDKFGLISKGSRVIDLGAAPGGWTQVAMKR--GAAVV 96
Query: 71 LGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQE 130
+G+DL+P+ P+ GA ++ D + AR+ +M G +A DLV+ D +PN G A +
Sbjct: 97 VGVDLLPVDPVPGATLIQGDFNDDDMPARLSSLM---GGKA-DLVMSDMAPNTTGHAATD 152
Query: 131 AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSA 190
M AL ++ A LAP G FV KVF+ +L +KQ F V KPA+SR
Sbjct: 153 HMRIIALTELALHFAFDALAPGGAFVAKVFQGGSEKQLLEPMKQRFASVRHAKPASSRKE 212
Query: 191 SAEIYLLGIKYK 202
S+E+Y++ ++
Sbjct: 213 SSELYVVAKGFR 224
>sp|A9A6B9|RLME_METM6 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=rlmE PE=3
SV=1
Length = 258
Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 109/193 (56%), Gaps = 6/193 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YY LAK+ YRSRA++KL QL+ KF+ ++ + V+DL APGGW+Q A V +
Sbjct: 15 DHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVGDKGFI 74
Query: 71 LGLDLVPIAPI--RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128
+G+DL + P+ ++++ D+TK E + + ++ E D+++ D SPN+ G W
Sbjct: 75 VGIDLQTVKPLPYENVIAIKGDMTKEEILKQARDLLPEKP----DVIICDASPNISGVWD 130
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188
+ L ++ AT+ L G FV KVF+ + + + + F+K KP ASR
Sbjct: 131 VDHARSLELTTMALMTATKMLKRGGNFVVKVFQGDLFEKYVQLVSEYFDKAFTTKPRASR 190
Query: 189 SASAEIYLLGIKY 201
SAE+Y++G ++
Sbjct: 191 DESAEVYVIGKRF 203
>sp|Q607B2|RLME_METCA Ribosomal RNA large subunit methyltransferase E OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=rlmE PE=3 SV=1
Length = 210
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 111/202 (54%), Gaps = 3/202 (1%)
Query: 2 GKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAV 61
G+ +H D+Y RLA+E GYRSRA +KL++LD V+DL AAPGGW Q A
Sbjct: 9 GRWLAEHFSDEYVRLAQEKGYRSRAVFKLMELDEHDRLFAPGTTVIDLGAAPGGWSQYAA 68
Query: 62 QRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121
+RV VL LD++P+ P+ G ++ D A ++E G R D+VL D +P
Sbjct: 69 RRVGASGRVLALDMLPMEPLPGVTVVQGDFLDD---AVFHAMLEAIGGRRVDVVLSDMAP 125
Query: 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181
N+ G + L + LA + L PKG+FV K+F+ + + + ++ F V +
Sbjct: 126 NMSGNRNVDQPRSMYLAELAFDLAERVLGPKGSFVVKLFQGEGFQEYVARARKAFGSVGM 185
Query: 182 DKPAASRSASAEIYLLGIKYKA 203
KP ASR+ SAEIYL+G Y+
Sbjct: 186 RKPKASRARSAEIYLVGKGYRG 207
>sp|Q0C187|RLME_HYPNA Ribosomal RNA large subunit methyltransferase E OS=Hyphomonas
neptunium (strain ATCC 15444) GN=rlmE PE=3 SV=1
Length = 234
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 110/192 (57%), Gaps = 6/192 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D Y R AK+ GYRSRA++KL+++D+ LR V+DL APGGW+QV++Q+ + V
Sbjct: 48 DPYVRKAKDEGYRSRAAYKLLEIDAAAKILRKGMRVVDLGCAPGGWIQVSLQQ--GAAEV 105
Query: 71 LGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQE 130
+G+DL+P+ PI GA +E D+ P+ AR+ + DL+L D + N G +
Sbjct: 106 VGIDLLPLDPIEGATIIEGDVNNPDDVARMMAGLSG----TPDLILSDMAANTTGHKQTD 161
Query: 131 AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSA 190
+ ALV +V A + L G F KVF+ VL LKQ F V+ KPAASR+
Sbjct: 162 HLRTVALVEMAVAFAIEHLDDGGAFCAKVFQGGATKDVLNLLKQHFRTVKHIKPAASRAG 221
Query: 191 SAEIYLLGIKYK 202
S EIY++ ++
Sbjct: 222 SPEIYVVAKGFR 233
>sp|A1TXM4|RLME_MARAV Ribosomal RNA large subunit methyltransferase E OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rlmE
PE=3 SV=1
Length = 207
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 121/197 (61%), Gaps = 3/197 (1%)
Query: 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV 66
+H D + + A++ GYRSRAS+KL+++++K ++ + V+DL +APGGW QVA + V
Sbjct: 13 EHVNDPFVKQAQQDGYRSRASYKLLEINNKDRLIKPTDLVVDLGSAPGGWSQVAAKLVGH 72
Query: 67 GSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA 126
V+ D++P+ PI G ++ D T+ E ++ +++ G RA D+V+ D +PN+ G
Sbjct: 73 KGRVVASDILPMDPIAGVEFIQGDFTEQEVFDQIMAILD--GARA-DVVISDMAPNISGV 129
Query: 127 WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAA 186
A + + LV ++ +A Q L PKG+FV KVF + Y + +++ F+KV + KP +
Sbjct: 130 NAADQAASMYLVELALDMACQVLKPKGSFVAKVFHGEGYDEYVKTVRESFDKVVIRKPDS 189
Query: 187 SRSASAEIYLLGIKYKA 203
SR+ S E+YL+ ++
Sbjct: 190 SRARSREVYLVAKGFRV 206
>sp|A6USA0|RLME_METVS Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rlmE
PE=3 SV=1
Length = 259
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YY LAK YRSRA++KL QL+ KF+ ++ + V+DL APGGW+Q A +
Sbjct: 15 DPYYNLAKRKNYRSRATYKLFQLNEKFNIIKEKNVVVDLGCAPGGWLQAARDMTGEEGFI 74
Query: 71 LGLDLVPIAPI--RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128
+G+DL I P+ ++++ D+T E +++ ++ E D+++ D SPN+ G W
Sbjct: 75 VGIDLQQIKPLPYENVIAVKGDMTDEETLKKIQDILPEKP----DVIICDASPNISGVWD 130
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188
+ L ++ AT+ L G FV KVF+ + + + + F+K KP ASR
Sbjct: 131 VDHTRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFYKYVELVSEYFDKAFTTKPRASR 190
Query: 189 SASAEIYLLGIKY 201
SAE+Y++ Y
Sbjct: 191 EESAEVYVIAKHY 203
>sp|O27801|RLME_METTH Ribosomal RNA large subunit methyltransferase E
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=rlmE PE=3 SV=1
Length = 211
Score = 126 bits (316), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 123/209 (58%), Gaps = 7/209 (3%)
Query: 1 MGK-VKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQV 59
MGK + + + D YYR AK+ YRSRAS+KL+QL++K+ ++ VLDL AAPGGW QV
Sbjct: 1 MGKRWQAERKRDHYYRSAKKENYRSRASYKLLQLNNKYKLIKKGDRVLDLGAAPGGWSQV 60
Query: 60 AVQRVPVGSLVLGLDLVPI--APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117
A+ +V LV+ +DL I P ++ D T PE + K++ E G RA D+V+
Sbjct: 61 ALDKVGEEGLVVAVDLQRIKGFPAENFRAIRGDFTDPEVK---DKIIRELGGRA-DVVIS 116
Query: 118 DGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFE 177
D +P++ G + + LV + + +A + L KG + K F+ + V+ L++ F
Sbjct: 117 DAAPSLSGIRDIDHLRSVDLVENVLDIAYRVLDRKGNILIKAFQGPELDRVIKELRKDFW 176
Query: 178 KVEVDKPAASRSASAEIYLLGIKYKAPAK 206
K++ KPA+SR ASAE+Y++G +K K
Sbjct: 177 KLKTTKPASSRKASAEMYIVGRDFKGKEK 205
>sp|Q5NQH8|RLME_ZYMMO Ribosomal RNA large subunit methyltransferase E OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=rlmE PE=3 SV=1
Length = 221
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 114/195 (58%), Gaps = 5/195 (2%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D Y + A+ GYRSRA++KL++LD +FS L+++ ++DL APGGW QVA ++ P +V
Sbjct: 29 DPYVQKAQAEGYRSRAAFKLIELDERFSLLKNARRIIDLGIAPGGWSQVARKKAPQAKIV 88
Query: 71 LGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQE 130
G+DL+ API G + D T PE + KK++E G A DLVL D + N G +
Sbjct: 89 -GIDLLEAAPIEGVTIFQNDFTDPEAQ---KKLIEALG-GAADLVLSDMAANTIGHAQTD 143
Query: 131 AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSA 190
+ ALV ++ A++ L G+FV KV ++ LK+LF +V+ KP ASR
Sbjct: 144 HLRTMALVEEAAVFASETLREGGSFVAKVLAGGADKDLVALLKRLFGQVKHAKPPASRRE 203
Query: 191 SAEIYLLGIKYKAPA 205
S+E Y++ ++ A
Sbjct: 204 SSEWYVIAQNFRGEA 218
>sp|A5VFI9|RLME_SPHWW Ribosomal RNA large subunit methyltransferase E OS=Sphingomonas
wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rlmE
PE=3 SV=1
Length = 229
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 109/193 (56%), Gaps = 5/193 (2%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D Y R A+ GYRSRA++KL++LD +F FLR + V+DL APGGW QV V+RV + +
Sbjct: 32 DPYVRKAQAEGYRSRAAYKLIELDERFHFLRGAKRVIDLGIAPGGWTQV-VRRVCPQAAI 90
Query: 71 LGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQE 130
+G+DL+P PI GA+ L+ D E A++ + + D+VL D + N G +
Sbjct: 91 VGIDLLPTDPIDGAIILQMDFMSDEAPAQLAEALGGPA----DIVLSDMAANTVGHQQTD 146
Query: 131 AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSA 190
+ ALV A++ L P GT+V KV ++ LK+LF V+ KP ASR
Sbjct: 147 HLRTMALVEAGCLFASEVLRPGGTYVAKVLAGGADHGLVAELKRLFTTVKHAKPPASRKD 206
Query: 191 SAEIYLLGIKYKA 203
S+E Y++ +K
Sbjct: 207 SSEWYVIAQGFKG 219
>sp|A5UKI5|RLME_METS3 Ribosomal RNA large subunit methyltransferase E
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=rlmE PE=3 SV=1
Length = 210
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 111/193 (57%), Gaps = 6/193 (3%)
Query: 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLV 70
D YY+ AK+ YRSRAS+K+ QLD KF ++ V+DL AAPGGW QVA+++V LV
Sbjct: 12 DPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVALEKVGEEGLV 71
Query: 71 LGLDLVPIAPI--RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128
+G+DL I P + D T E + +KVM G +A +V+ D SP++ G
Sbjct: 72 IGVDLNRIKPFPEENFHGIRGDFTTTEVQ---EKVMNLIGGKA-KVVISDASPSLCGIKN 127
Query: 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188
+ + L + +A L PKG V KVF+ +Y +L LK+ + +V+ KP +SR
Sbjct: 128 IDQLRSIDLTNTVIGIADNILEPKGNLVMKVFQGPEYKDMLTRLKKKYRQVKTTKPPSSR 187
Query: 189 SASAEIYLLGIKY 201
S+E+Y++G+ +
Sbjct: 188 KKSSEMYVVGLDF 200
>sp|A1K598|RLME_AZOSB Ribosomal RNA large subunit methyltransferase E OS=Azoarcus sp.
(strain BH72) GN=rlmE PE=3 SV=1
Length = 205
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 3/196 (1%)
Query: 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV 66
+H D Y + A GYR+RA++KL+++D + LR V+DL AAPG W QVA QRV
Sbjct: 13 EHLNDTYVQRANAEGYRARAAYKLMEIDERDRLLRPGRVVVDLGAAPGSWCQVARQRVGS 72
Query: 67 GSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA 126
VL LD++P+ P+ G L+ D T+ A ++ + V DLVL D +PN+ G
Sbjct: 73 DGRVLALDILPMDPVPGVDFLQGDFTEDAVLAELESRLAGAAV---DLVLSDMAPNLSGV 129
Query: 127 WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAA 186
+ L ++ A + L P G F+ KVF+ + + + ++F V+V KP A
Sbjct: 130 ATVDQARSIYLCELALDFARRHLKPGGQFLVKVFQGEGFMGFRKAMDEVFLSVQVRKPKA 189
Query: 187 SRSASAEIYLLGIKYK 202
SR SAE+YLLG+ +
Sbjct: 190 SRDRSAEVYLLGVDLR 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,647,231
Number of Sequences: 539616
Number of extensions: 14082848
Number of successful extensions: 73926
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 1750
Number of HSP's that attempted gapping in prelim test: 59764
Number of HSP's gapped (non-prelim): 9622
length of query: 832
length of database: 191,569,459
effective HSP length: 126
effective length of query: 706
effective length of database: 123,577,843
effective search space: 87245957158
effective search space used: 87245957158
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)