Query 003302
Match_columns 832
No_of_seqs 338 out of 1987
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 20:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1098 Putative SAM-dependent 100.0 1E-177 3E-182 1467.8 48.0 754 1-797 1-772 (780)
2 PF07780 Spb1_C: Spb1 C-termin 100.0 2.1E-68 4.5E-73 543.0 17.6 197 604-801 5-215 (215)
3 KOG1099 SAM-dependent methyltr 100.0 1E-44 2.2E-49 366.8 16.3 211 1-215 1-219 (294)
4 COG0293 FtsJ 23S rRNA methylas 100.0 5.1E-44 1.1E-48 363.8 20.7 196 6-204 9-204 (205)
5 PF11861 DUF3381: Domain of un 100.0 1.3E-43 2.8E-48 350.2 15.7 159 230-390 1-159 (159)
6 KOG4589 Cell division protein 100.0 1.4E-38 2.9E-43 314.3 18.1 195 7-204 34-229 (232)
7 PRK11188 rrmJ 23S rRNA methylt 100.0 2.3E-35 5.1E-40 304.9 22.4 194 7-203 16-209 (209)
8 PF01728 FtsJ: FtsJ-like methy 100.0 7.3E-34 1.6E-38 286.0 11.5 179 22-201 1-181 (181)
9 TIGR00438 rrmJ cell division p 100.0 4.6E-27 1E-31 238.4 22.2 188 11-201 1-188 (188)
10 KOG3673 FtsJ-like RNA methyltr 99.6 3.1E-16 6.7E-21 174.4 9.8 197 7-204 216-447 (845)
11 KOG3674 FtsJ-like RNA methyltr 99.6 1.2E-15 2.5E-20 168.6 10.2 185 21-207 108-324 (696)
12 COG4123 Predicted O-methyltran 99.6 1.1E-14 2.4E-19 153.6 13.3 173 37-221 39-230 (248)
13 PF01209 Ubie_methyltran: ubiE 99.3 1.8E-12 4E-17 136.7 6.5 118 40-179 45-173 (233)
14 PTZ00146 fibrillarin; Provisio 99.3 6.7E-11 1.5E-15 127.9 16.4 141 22-183 107-271 (293)
15 PRK14901 16S rRNA methyltransf 99.3 2.2E-11 4.8E-16 139.4 12.9 129 40-175 250-403 (434)
16 PRK14902 16S rRNA methyltransf 99.3 3E-11 6.6E-16 138.7 13.8 132 41-182 249-407 (444)
17 COG2226 UbiE Methylase involve 99.2 1.6E-11 3.5E-16 129.5 9.3 112 41-175 50-172 (238)
18 TIGR00446 nop2p NOL1/NOP2/sun 99.2 4.8E-11 1E-15 128.1 10.9 125 40-175 69-218 (264)
19 PF05175 MTS: Methyltransferas 99.2 9E-11 2E-15 117.8 10.8 119 42-182 31-160 (170)
20 PF12847 Methyltransf_18: Meth 99.1 9.5E-11 2.1E-15 107.9 8.1 98 42-159 1-111 (112)
21 PRK14903 16S rRNA methyltransf 99.1 2.2E-10 4.8E-15 131.1 12.5 125 40-174 235-384 (431)
22 PRK11760 putative 23S rRNA C24 99.1 1.9E-10 4.2E-15 126.1 11.3 125 19-172 181-320 (357)
23 PRK10901 16S rRNA methyltransf 99.1 4.3E-10 9.3E-15 128.7 12.7 126 40-175 242-391 (427)
24 PRK04266 fibrillarin; Provisio 99.1 4.5E-10 9.8E-15 118.2 11.7 121 40-182 70-209 (226)
25 PRK14904 16S rRNA methyltransf 99.1 4.1E-10 8.8E-15 129.5 12.1 123 41-175 249-396 (445)
26 PRK11933 yebU rRNA (cytosine-C 99.1 4.2E-10 9E-15 129.7 12.0 125 41-175 112-261 (470)
27 TIGR00563 rsmB ribosomal RNA s 99.1 7.9E-10 1.7E-14 126.5 13.9 126 40-175 236-387 (426)
28 TIGR02752 MenG_heptapren 2-hep 99.1 3.3E-10 7.2E-15 118.2 9.6 108 40-169 43-161 (231)
29 PRK15001 SAM-dependent 23S rib 99.1 1.6E-09 3.6E-14 121.7 14.7 133 43-204 229-375 (378)
30 COG0144 Sun tRNA and rRNA cyto 99.1 8.1E-10 1.8E-14 123.5 12.1 128 40-175 154-307 (355)
31 PLN02233 ubiquinone biosynthes 99.0 4.1E-10 8.9E-15 120.7 8.3 103 40-164 71-187 (261)
32 TIGR00138 gidB 16S rRNA methyl 99.0 2.4E-09 5.3E-14 108.9 12.5 103 43-174 43-156 (181)
33 PF13847 Methyltransf_31: Meth 99.0 7.1E-10 1.5E-14 108.7 8.0 100 41-161 2-112 (152)
34 COG4106 Tam Trans-aconitate me 99.0 4.9E-10 1.1E-14 115.0 6.7 119 18-164 10-134 (257)
35 PRK14103 trans-aconitate 2-met 99.0 1.3E-09 2.8E-14 116.1 9.7 113 21-161 12-128 (255)
36 PRK09328 N5-glutamine S-adenos 99.0 7.4E-09 1.6E-13 110.8 15.2 140 41-198 107-273 (275)
37 TIGR03534 RF_mod_PrmC protein- 99.0 3.7E-09 8E-14 111.2 12.6 133 42-188 87-246 (251)
38 COG2230 Cfa Cyclopropane fatty 99.0 2.1E-09 4.5E-14 115.8 10.7 106 30-161 61-178 (283)
39 PRK00377 cbiT cobalt-precorrin 99.0 4.8E-09 1E-13 107.7 11.8 125 40-189 38-175 (198)
40 TIGR02469 CbiT precorrin-6Y C5 98.9 5.1E-09 1.1E-13 97.5 10.9 96 40-160 17-123 (124)
41 PRK10258 biotin biosynthesis p 98.9 5.8E-09 1.3E-13 110.5 12.5 107 42-173 42-154 (251)
42 PRK00107 gidB 16S rRNA methylt 98.9 5.7E-09 1.2E-13 106.9 11.6 96 38-161 41-147 (187)
43 PRK01683 trans-aconitate 2-met 98.9 4.1E-09 9E-14 112.0 10.8 97 40-160 29-131 (258)
44 KOG1122 tRNA and rRNA cytosine 98.9 4.6E-09 1E-13 116.6 11.4 140 41-191 240-404 (460)
45 PRK09489 rsmC 16S ribosomal RN 98.9 1.2E-08 2.6E-13 113.7 14.5 131 43-204 197-338 (342)
46 PRK08287 cobalt-precorrin-6Y C 98.9 1.2E-08 2.5E-13 103.7 12.8 113 41-181 30-154 (187)
47 TIGR00537 hemK_rel_arch HemK-r 98.9 1.6E-08 3.6E-13 101.9 13.5 118 42-175 19-156 (179)
48 TIGR03704 PrmC_rel_meth putati 98.9 1E-08 2.3E-13 109.5 12.5 122 43-175 87-231 (251)
49 KOG1540 Ubiquinone biosynthesi 98.9 1.1E-08 2.4E-13 107.4 12.0 116 42-179 100-234 (296)
50 PF13659 Methyltransf_26: Meth 98.9 3.2E-09 6.9E-14 98.6 6.8 102 43-158 1-114 (117)
51 TIGR00536 hemK_fam HemK family 98.9 1.9E-08 4.1E-13 109.2 13.6 137 44-198 116-280 (284)
52 TIGR02072 BioC biotin biosynth 98.9 1E-08 2.2E-13 106.3 10.9 122 22-167 15-143 (240)
53 COG2813 RsmC 16S RNA G1207 met 98.9 2.8E-08 6E-13 107.6 14.3 130 43-202 159-299 (300)
54 PRK14966 unknown domain/N5-glu 98.9 2.9E-08 6.3E-13 112.3 15.1 144 41-200 250-418 (423)
55 PRK11873 arsM arsenite S-adeno 98.8 8E-09 1.7E-13 110.8 9.0 97 40-158 75-182 (272)
56 PRK00121 trmB tRNA (guanine-N( 98.8 8.2E-09 1.8E-13 106.6 8.7 105 41-159 39-156 (202)
57 PF02353 CMAS: Mycolic acid cy 98.8 1.8E-08 3.9E-13 109.0 11.6 97 40-161 60-168 (273)
58 PLN02244 tocopherol O-methyltr 98.8 1.1E-08 2.4E-13 113.8 10.2 96 41-160 117-224 (340)
59 PF08241 Methyltransf_11: Meth 98.8 4E-09 8.7E-14 93.1 5.4 87 47-157 1-95 (95)
60 COG1189 Predicted rRNA methyla 98.8 3.9E-08 8.5E-13 102.8 11.9 116 19-159 56-178 (245)
61 TIGR01177 conserved hypothetic 98.8 2.8E-08 6.1E-13 110.0 11.5 111 40-166 180-301 (329)
62 PRK14968 putative methyltransf 98.8 1.1E-07 2.5E-12 95.3 14.6 120 41-175 22-164 (188)
63 PRK11036 putative S-adenosyl-L 98.8 1.4E-08 3E-13 108.3 8.3 98 41-162 43-152 (255)
64 PRK08317 hypothetical protein; 98.8 1.9E-08 4.2E-13 103.9 9.0 98 40-159 17-124 (241)
65 PRK07402 precorrin-6B methylas 98.8 6E-08 1.3E-12 99.3 12.5 119 40-184 38-168 (196)
66 PRK11207 tellurite resistance 98.8 2.5E-08 5.3E-13 102.6 9.6 92 42-157 30-132 (197)
67 TIGR00091 tRNA (guanine-N(7)-) 98.8 1.5E-08 3.2E-13 103.9 7.9 120 42-174 16-147 (194)
68 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 1.7E-08 3.6E-13 109.8 8.6 127 40-175 83-238 (283)
69 PRK14967 putative methyltransf 98.8 7.7E-08 1.7E-12 100.6 13.2 131 28-174 23-174 (223)
70 PTZ00098 phosphoethanolamine N 98.8 2.3E-08 5E-13 107.4 9.5 99 40-160 50-157 (263)
71 PF13489 Methyltransf_23: Meth 98.8 7.8E-09 1.7E-13 100.5 5.3 99 40-163 20-119 (161)
72 PRK15068 tRNA mo(5)U34 methylt 98.7 3.2E-08 6.9E-13 109.5 10.1 109 25-159 106-226 (322)
73 TIGR00740 methyltransferase, p 98.7 5.2E-08 1.1E-12 102.7 11.2 98 40-159 51-161 (239)
74 PRK11088 rrmA 23S rRNA methylt 98.7 4.9E-08 1.1E-12 105.1 11.0 95 41-164 84-186 (272)
75 TIGR00080 pimt protein-L-isoas 98.7 2.5E-08 5.4E-13 103.7 8.4 92 40-159 75-177 (215)
76 TIGR00406 prmA ribosomal prote 98.7 9.7E-08 2.1E-12 103.9 13.2 113 40-181 157-281 (288)
77 PRK01544 bifunctional N5-gluta 98.7 8.8E-08 1.9E-12 112.0 13.1 132 43-189 139-299 (506)
78 PLN02396 hexaprenyldihydroxybe 98.7 5.9E-08 1.3E-12 107.3 11.1 97 41-162 130-238 (322)
79 PRK13942 protein-L-isoaspartat 98.7 3.2E-08 6.8E-13 103.1 8.1 91 40-158 74-175 (212)
80 PF13649 Methyltransf_25: Meth 98.7 3.2E-08 6.9E-13 90.3 7.1 88 46-153 1-101 (101)
81 PRK15128 23S rRNA m(5)C1962 me 98.7 2E-07 4.2E-12 105.9 14.6 123 41-174 219-355 (396)
82 TIGR00478 tly hemolysin TlyA f 98.7 5.6E-08 1.2E-12 102.5 9.5 55 21-77 54-108 (228)
83 TIGR03533 L3_gln_methyl protei 98.7 6.4E-08 1.4E-12 105.2 10.2 118 42-174 121-264 (284)
84 PRK15451 tRNA cmo(5)U34 methyl 98.7 1E-07 2.2E-12 101.4 11.3 97 40-158 54-163 (247)
85 PRK11705 cyclopropane fatty ac 98.7 8E-08 1.7E-12 108.7 10.9 97 40-161 165-269 (383)
86 PRK04457 spermidine synthase; 98.7 1.3E-07 2.9E-12 101.7 11.9 124 41-182 65-202 (262)
87 PF06460 NSP13: Coronavirus NS 98.7 6.4E-08 1.4E-12 101.7 9.1 156 41-218 60-230 (299)
88 TIGR00452 methyltransferase, p 98.7 9.1E-08 2E-12 105.4 10.5 95 41-160 120-226 (314)
89 TIGR00477 tehB tellurite resis 98.7 8E-08 1.7E-12 98.7 9.1 93 43-159 31-133 (195)
90 PF05401 NodS: Nodulation prot 98.6 1.2E-07 2.7E-12 97.0 10.2 117 44-183 45-179 (201)
91 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 6.7E-08 1.4E-12 99.3 8.2 100 41-162 38-146 (223)
92 PRK06922 hypothetical protein; 98.6 6.6E-08 1.4E-12 114.1 9.1 103 42-158 418-536 (677)
93 PRK13944 protein-L-isoaspartat 98.6 9.3E-08 2E-12 99.0 9.3 92 40-159 70-173 (205)
94 PLN02336 phosphoethanolamine N 98.6 5.2E-08 1.1E-12 112.8 8.2 97 40-160 264-370 (475)
95 KOG2198 tRNA cytosine-5-methyl 98.6 9.1E-08 2E-12 105.5 9.3 140 40-181 153-321 (375)
96 COG2890 HemK Methylase of poly 98.6 3.4E-07 7.4E-12 99.5 13.2 128 45-188 113-268 (280)
97 PLN02490 MPBQ/MSBQ methyltrans 98.6 1.6E-07 3.4E-12 104.5 10.8 98 38-158 109-214 (340)
98 PHA03412 putative methyltransf 98.6 8.7E-08 1.9E-12 101.1 7.8 102 43-157 50-160 (241)
99 PRK11805 N5-glutamine S-adenos 98.6 1.6E-07 3.5E-12 103.3 9.7 105 44-161 135-265 (307)
100 PRK00811 spermidine synthase; 98.6 5.7E-07 1.2E-11 97.8 13.4 142 41-200 75-237 (283)
101 COG2242 CobL Precorrin-6B meth 98.6 5.4E-07 1.2E-11 91.6 11.8 109 40-175 32-151 (187)
102 smart00828 PKS_MT Methyltransf 98.5 1.4E-07 3.1E-12 97.9 7.8 92 45-160 2-105 (224)
103 PRK00216 ubiE ubiquinone/menaq 98.5 2.8E-07 6.1E-12 95.7 9.8 100 41-162 50-161 (239)
104 TIGR03438 probable methyltrans 98.5 5.8E-07 1.3E-11 98.5 12.5 130 22-166 41-184 (301)
105 PRK14121 tRNA (guanine-N(7)-)- 98.5 2.4E-07 5.2E-12 104.4 9.6 103 42-159 122-235 (390)
106 PRK00517 prmA ribosomal protei 98.5 7.8E-07 1.7E-11 94.8 13.1 110 40-180 117-235 (250)
107 KOG1975 mRNA cap methyltransfe 98.5 2.7E-07 5.8E-12 99.8 9.2 182 13-221 79-286 (389)
108 PRK12335 tellurite resistance 98.5 3.4E-07 7.3E-12 99.6 9.7 92 40-157 119-221 (287)
109 PRK05785 hypothetical protein; 98.5 1.8E-07 3.9E-12 98.4 7.0 88 41-152 50-140 (226)
110 COG2264 PrmA Ribosomal protein 98.5 5.8E-07 1.2E-11 97.9 10.9 131 20-182 143-287 (300)
111 PHA03411 putative methyltransf 98.5 4.4E-07 9.5E-12 97.8 9.7 150 42-206 64-243 (279)
112 PLN03075 nicotianamine synthas 98.5 5E-07 1.1E-11 98.5 10.2 138 42-201 123-277 (296)
113 TIGR03587 Pse_Me-ase pseudamin 98.5 1.2E-06 2.6E-11 90.9 12.1 97 39-159 40-142 (204)
114 COG2227 UbiG 2-polyprenyl-3-me 98.5 1.9E-07 4.2E-12 98.0 5.9 94 42-160 59-162 (243)
115 PRK11783 rlmL 23S rRNA m(2)G24 98.5 9.8E-07 2.1E-11 107.2 12.6 107 41-159 537-656 (702)
116 PRK13943 protein-L-isoaspartat 98.4 7.8E-07 1.7E-11 98.5 10.3 92 40-159 78-180 (322)
117 PF08242 Methyltransf_12: Meth 98.4 2.3E-07 5E-12 84.1 5.1 88 47-155 1-99 (99)
118 PF06325 PrmA: Ribosomal prote 98.4 1.1E-06 2.3E-11 96.2 9.6 111 40-180 159-280 (295)
119 smart00138 MeTrc Methyltransfe 98.4 8.1E-07 1.7E-11 95.7 8.4 96 42-157 99-240 (264)
120 PF03848 TehB: Tellurite resis 98.4 6.4E-07 1.4E-11 92.1 7.3 98 38-160 27-134 (192)
121 TIGR03840 TMPT_Se_Te thiopurin 98.4 1.4E-06 3E-11 91.1 9.7 98 41-160 33-153 (213)
122 PF07021 MetW: Methionine bios 98.4 1.5E-06 3.2E-11 88.9 9.6 105 39-169 10-118 (193)
123 PF10672 Methyltrans_SAM: S-ad 98.4 2.7E-06 5.9E-11 92.6 11.9 118 42-174 123-254 (286)
124 KOG1271 Methyltransferases [Ge 98.4 9.5E-07 2.1E-11 89.0 7.5 130 37-182 62-204 (227)
125 PRK00312 pcm protein-L-isoaspa 98.3 1.3E-06 2.9E-11 90.4 8.9 90 40-160 76-176 (212)
126 PLN02366 spermidine synthase 98.3 5E-06 1.1E-10 91.6 13.8 143 41-200 90-253 (308)
127 KOG1270 Methyltransferases [Co 98.3 1.3E-06 2.8E-11 92.7 8.7 92 43-159 90-195 (282)
128 PRK01581 speE spermidine synth 98.3 5.6E-06 1.2E-10 92.5 14.2 143 41-200 149-313 (374)
129 cd02440 AdoMet_MTases S-adenos 98.3 1.5E-06 3.2E-11 75.9 7.8 92 45-158 1-103 (107)
130 COG1092 Predicted SAM-dependen 98.3 3.2E-06 6.9E-11 95.6 12.2 121 42-173 217-351 (393)
131 PF01135 PCMT: Protein-L-isoas 98.3 3.4E-07 7.4E-12 95.4 3.9 92 40-159 70-172 (209)
132 smart00650 rADc Ribosomal RNA 98.3 1.5E-06 3.3E-11 87.0 8.0 115 41-182 12-144 (169)
133 TIGR02716 C20_methyl_CrtF C-20 98.3 1.7E-06 3.7E-11 94.7 8.7 96 40-158 147-253 (306)
134 PLN02336 phosphoethanolamine N 98.3 1.6E-06 3.4E-11 100.5 8.8 96 42-158 37-141 (475)
135 PF01269 Fibrillarin: Fibrilla 98.3 9.2E-07 2E-11 92.1 5.9 118 21-159 47-178 (229)
136 PLN02672 methionine S-methyltr 98.3 3.7E-06 8.1E-11 105.0 11.8 128 43-182 119-302 (1082)
137 PLN02781 Probable caffeoyl-CoA 98.2 5.9E-06 1.3E-10 87.6 10.7 98 41-157 67-176 (234)
138 TIGR00417 speE spermidine synt 98.2 1.1E-05 2.3E-10 87.3 12.5 141 42-200 72-232 (270)
139 PRK06202 hypothetical protein; 98.2 3.2E-06 7E-11 88.8 7.7 101 41-162 59-170 (232)
140 PF03291 Pox_MCEL: mRNA cappin 98.2 2.2E-06 4.8E-11 95.2 6.5 107 42-162 62-189 (331)
141 COG1041 Predicted DNA modifica 98.2 6.4E-06 1.4E-10 91.0 9.4 138 40-197 195-344 (347)
142 PF14314 Methyltrans_Mon: Viru 98.2 3.7E-05 8E-10 91.5 16.2 176 26-214 308-512 (675)
143 KOG1596 Fibrillarin and relate 98.2 6.9E-06 1.5E-10 85.9 9.0 121 21-162 130-264 (317)
144 PRK13255 thiopurine S-methyltr 98.1 5.3E-06 1.1E-10 87.1 7.9 95 41-157 36-153 (218)
145 TIGR02021 BchM-ChlM magnesium 98.1 1.8E-05 3.8E-10 82.4 11.5 91 41-157 54-156 (219)
146 TIGR01983 UbiG ubiquinone bios 98.1 2.8E-05 6E-10 80.7 12.9 96 42-161 45-151 (224)
147 COG2521 Predicted archaeal met 98.1 2.1E-05 4.6E-10 82.2 11.2 122 41-182 133-276 (287)
148 PRK05134 bifunctional 3-demeth 98.1 1.3E-05 2.9E-10 83.9 9.9 97 41-161 47-153 (233)
149 PF05148 Methyltransf_8: Hypot 98.1 3E-05 6.5E-10 80.4 11.8 126 41-204 71-199 (219)
150 PRK10909 rsmD 16S rRNA m(2)G96 98.1 2E-05 4.3E-10 81.7 10.6 100 41-162 52-162 (199)
151 COG2519 GCD14 tRNA(1-methylade 98.1 1.3E-05 2.7E-10 85.2 9.0 112 40-179 92-216 (256)
152 PRK00050 16S rRNA m(4)C1402 me 98.1 5.1E-05 1.1E-09 83.2 13.6 73 40-119 17-98 (296)
153 PF02390 Methyltransf_4: Putat 98.0 1.6E-05 3.4E-10 82.2 9.0 104 43-159 18-133 (195)
154 COG2263 Predicted RNA methylas 98.0 2.7E-05 5.9E-10 79.4 10.4 102 42-172 45-156 (198)
155 KOG4300 Predicted methyltransf 98.0 6.7E-06 1.4E-10 84.5 6.0 111 45-178 79-201 (252)
156 KOG2904 Predicted methyltransf 98.0 3.2E-05 7E-10 82.5 11.3 140 43-198 149-325 (328)
157 PLN02476 O-methyltransferase 98.0 2.5E-05 5.5E-10 84.7 10.6 98 41-157 117-226 (278)
158 KOG3191 Predicted N6-DNA-methy 98.0 6.6E-05 1.4E-09 76.0 12.6 143 43-201 44-207 (209)
159 PF08003 Methyltransf_9: Prote 98.0 1.5E-05 3.2E-10 86.8 8.3 93 42-159 115-219 (315)
160 PF08704 GCD14: tRNA methyltra 98.0 4E-05 8.7E-10 81.9 11.1 132 22-182 25-170 (247)
161 PRK13168 rumA 23S rRNA m(5)U19 97.9 6.4E-05 1.4E-09 86.8 12.7 95 40-159 295-400 (443)
162 COG2518 Pcm Protein-L-isoaspar 97.9 2.8E-05 6E-10 80.8 8.7 88 40-159 70-169 (209)
163 PRK03612 spermidine synthase; 97.9 3.2E-05 7E-10 91.0 10.4 119 41-176 296-437 (521)
164 TIGR02081 metW methionine bios 97.9 1.7E-05 3.6E-10 81.2 7.0 71 39-120 10-84 (194)
165 PF01596 Methyltransf_3: O-met 97.9 1.9E-05 4.1E-10 82.3 7.1 98 42-158 45-154 (205)
166 PRK14896 ksgA 16S ribosomal RN 97.9 2.9E-05 6.2E-10 83.4 7.6 67 40-122 27-102 (258)
167 PRK03522 rumB 23S rRNA methylu 97.8 0.00013 2.7E-09 80.7 12.1 66 42-120 173-249 (315)
168 PRK07580 Mg-protoporphyrin IX 97.8 6.5E-05 1.4E-09 78.1 9.2 63 41-120 62-136 (230)
169 PRK11727 23S rRNA mA1618 methy 97.8 0.0002 4.3E-09 79.5 13.4 151 42-203 114-309 (321)
170 PLN02585 magnesium protoporphy 97.8 8.1E-05 1.8E-09 82.4 10.3 61 42-119 144-220 (315)
171 PLN02823 spermine synthase 97.8 0.00022 4.9E-09 79.6 13.0 141 42-200 103-267 (336)
172 COG1889 NOP1 Fibrillarin-like 97.8 0.00015 3.2E-09 74.6 10.5 97 40-158 74-179 (231)
173 KOG1541 Predicted protein carb 97.8 0.0001 2.2E-09 76.6 9.1 134 43-190 51-195 (270)
174 TIGR00095 RNA methyltransferas 97.8 0.00011 2.4E-09 75.5 9.3 101 42-161 49-161 (189)
175 KOG3045 Predicted RNA methylas 97.7 0.00022 4.8E-09 75.7 11.1 124 42-205 180-306 (325)
176 COG4976 Predicted methyltransf 97.7 2E-05 4.3E-10 82.2 3.1 104 43-164 126-230 (287)
177 PF01170 UPF0020: Putative RNA 97.7 0.00022 4.7E-09 72.7 10.3 118 21-156 11-148 (179)
178 TIGR00755 ksgA dimethyladenosi 97.7 0.00012 2.6E-09 78.3 8.8 65 41-121 28-104 (253)
179 PF03602 Cons_hypoth95: Conser 97.7 5.1E-05 1.1E-09 77.7 5.6 103 42-162 42-156 (183)
180 PRK13256 thiopurine S-methyltr 97.7 6.2E-05 1.3E-09 79.5 6.2 100 41-160 42-164 (226)
181 PTZ00338 dimethyladenosine tra 97.7 8.5E-05 1.8E-09 81.5 7.5 69 40-124 34-114 (294)
182 COG3963 Phospholipid N-methylt 97.7 0.00016 3.5E-09 72.3 8.4 109 41-164 47-161 (194)
183 TIGR00479 rumA 23S rRNA (uraci 97.7 0.00031 6.8E-09 80.8 12.0 71 40-120 290-371 (431)
184 PF05724 TPMT: Thiopurine S-me 97.6 0.00017 3.6E-09 75.9 8.9 99 40-160 35-158 (218)
185 TIGR02085 meth_trns_rumB 23S r 97.6 0.0003 6.5E-09 79.7 11.3 91 42-159 233-334 (374)
186 PLN02589 caffeoyl-CoA O-methyl 97.6 0.00034 7.4E-09 74.9 10.1 97 42-157 79-188 (247)
187 PF00891 Methyltransf_2: O-met 97.6 0.00024 5.2E-09 75.0 8.8 95 40-158 98-198 (241)
188 PF02384 N6_Mtase: N-6 DNA Met 97.6 0.00016 3.5E-09 79.2 7.8 110 40-159 44-183 (311)
189 COG0742 N6-adenine-specific me 97.5 0.00038 8.2E-09 71.4 9.4 102 42-161 43-156 (187)
190 KOG2361 Predicted methyltransf 97.5 0.00018 4E-09 75.8 6.2 140 10-166 39-190 (264)
191 COG4122 Predicted O-methyltran 97.4 0.00057 1.2E-08 71.9 9.6 94 41-157 58-164 (219)
192 KOG3420 Predicted RNA methylas 97.4 0.00023 5.1E-09 69.7 5.6 86 23-122 29-125 (185)
193 PRK00274 ksgA 16S ribosomal RN 97.4 0.0003 6.6E-09 76.1 6.8 69 40-122 40-116 (272)
194 PF02475 Met_10: Met-10+ like- 97.3 0.00021 4.6E-09 74.2 4.7 90 39-156 98-199 (200)
195 COG0220 Predicted S-adenosylme 97.3 0.00037 8.1E-09 73.7 6.5 103 44-159 50-164 (227)
196 PF12147 Methyltransf_20: Puta 97.3 0.00067 1.5E-08 73.5 8.4 100 42-157 135-247 (311)
197 KOG1663 O-methyltransferase [S 97.3 0.0013 2.8E-08 69.2 10.0 97 42-157 73-181 (237)
198 KOG2899 Predicted methyltransf 97.3 0.00038 8.2E-09 73.4 5.5 34 43-77 59-92 (288)
199 TIGR02987 met_A_Alw26 type II 97.2 0.00056 1.2E-08 80.7 7.3 74 42-121 31-122 (524)
200 KOG1499 Protein arginine N-met 97.2 0.00084 1.8E-08 74.3 7.6 96 40-156 58-164 (346)
201 PF10294 Methyltransf_16: Puta 97.2 0.0016 3.4E-08 66.0 9.0 114 40-172 43-170 (173)
202 PRK04338 N(2),N(2)-dimethylgua 97.2 0.00074 1.6E-08 76.7 7.3 89 43-158 58-157 (382)
203 PF09445 Methyltransf_15: RNA 97.2 0.00031 6.6E-09 70.7 3.7 113 45-174 2-134 (163)
204 COG0421 SpeE Spermidine syntha 97.2 0.0076 1.7E-07 65.9 14.7 139 44-201 78-237 (282)
205 PRK01544 bifunctional N5-gluta 97.2 0.00085 1.8E-08 79.0 7.8 104 41-158 346-461 (506)
206 PRK04148 hypothetical protein; 97.1 0.0024 5.1E-08 62.4 9.3 94 42-164 16-114 (134)
207 PF05185 PRMT5: PRMT5 arginine 97.1 0.00047 1E-08 79.8 5.2 94 42-156 186-294 (448)
208 KOG3010 Methyltransferase [Gen 97.1 0.0011 2.5E-08 69.9 7.5 113 44-177 35-157 (261)
209 PF01564 Spermine_synth: Sperm 97.1 0.0039 8.4E-08 66.8 11.3 144 41-202 75-239 (246)
210 COG2933 Predicted SAM-dependen 97.1 0.00095 2.1E-08 71.0 6.3 84 22-119 184-278 (358)
211 PF04989 CmcI: Cephalosporin h 97.0 0.002 4.3E-08 67.2 8.2 100 43-157 33-145 (206)
212 TIGR02143 trmA_only tRNA (urac 97.0 0.0027 5.9E-08 71.5 10.0 48 44-94 199-257 (353)
213 PRK05031 tRNA (uracil-5-)-meth 97.0 0.0034 7.4E-08 70.9 10.8 72 44-120 208-297 (362)
214 PF05219 DREV: DREV methyltran 97.0 0.0016 3.4E-08 69.8 7.0 90 43-159 95-188 (265)
215 PF13578 Methyltransf_24: Meth 96.9 0.0012 2.5E-08 60.8 4.5 90 47-157 1-103 (106)
216 PF08123 DOT1: Histone methyla 96.8 0.0047 1E-07 64.5 8.5 97 40-157 40-156 (205)
217 COG2520 Predicted methyltransf 96.8 0.0066 1.4E-07 67.9 10.0 96 40-163 186-293 (341)
218 KOG1661 Protein-L-isoaspartate 96.7 0.0016 3.4E-08 67.7 4.4 93 39-159 79-193 (237)
219 PF06080 DUF938: Protein of un 96.7 0.0053 1.2E-07 63.9 8.1 105 40-157 22-139 (204)
220 TIGR00308 TRM1 tRNA(guanine-26 96.7 0.005 1.1E-07 69.9 8.6 90 44-158 46-146 (374)
221 PF02527 GidB: rRNA small subu 96.7 0.0039 8.4E-08 64.1 7.0 99 37-165 42-152 (184)
222 KOG1500 Protein arginine N-met 96.7 0.0032 7E-08 69.0 6.6 149 42-221 177-350 (517)
223 PRK00536 speE spermidine synth 96.5 0.016 3.6E-07 62.7 10.9 108 41-181 71-197 (262)
224 COG4076 Predicted RNA methylas 96.5 0.0035 7.5E-08 64.0 5.2 89 44-157 34-133 (252)
225 TIGR03439 methyl_EasF probable 96.5 0.031 6.7E-07 62.2 13.1 129 22-164 54-202 (319)
226 PLN02232 ubiquinone biosynthes 96.4 0.0021 4.6E-08 64.1 3.0 61 82-164 26-86 (160)
227 COG0357 GidB Predicted S-adeno 96.4 0.026 5.6E-07 59.4 10.9 87 43-157 68-166 (215)
228 COG4798 Predicted methyltransf 96.3 0.0039 8.5E-08 64.0 4.1 37 40-76 46-82 (238)
229 PF01739 CheR: CheR methyltran 96.3 0.012 2.5E-07 61.2 7.7 95 43-157 32-173 (196)
230 KOG2940 Predicted methyltransf 96.2 0.0026 5.6E-08 66.7 2.2 109 41-173 71-188 (325)
231 KOG2187 tRNA uracil-5-methyltr 96.1 0.0077 1.7E-07 69.7 6.0 58 29-89 370-438 (534)
232 PF03141 Methyltransf_29: Puta 96.1 0.0033 7.2E-08 72.6 2.7 94 44-161 119-221 (506)
233 KOG2671 Putative RNA methylase 96.0 0.012 2.6E-07 65.1 6.6 106 40-158 206-353 (421)
234 COG2265 TrmA SAM-dependent met 96.0 0.043 9.3E-07 63.5 11.3 81 29-120 280-371 (432)
235 COG0030 KsgA Dimethyladenosine 96.0 0.013 2.8E-07 63.3 6.5 71 41-124 29-108 (259)
236 COG0500 SmtA SAM-dependent met 95.9 0.031 6.7E-07 50.2 7.8 95 46-163 52-159 (257)
237 PF05958 tRNA_U5-meth_tr: tRNA 95.9 0.0081 1.8E-07 67.6 4.8 45 45-92 199-254 (352)
238 KOG0820 Ribosomal RNA adenine 95.9 0.016 3.5E-07 62.4 6.7 70 40-125 56-137 (315)
239 PRK10611 chemotaxis methyltran 95.7 0.053 1.1E-06 59.5 10.0 95 44-157 117-260 (287)
240 PF11968 DUF3321: Putative met 95.7 0.14 3.1E-06 53.8 12.4 146 13-182 14-180 (219)
241 COG0275 Predicted S-adenosylme 95.4 0.18 3.9E-06 55.4 12.4 73 41-119 22-104 (314)
242 PF03141 Methyltransf_29: Puta 95.1 0.055 1.2E-06 62.9 7.8 131 44-199 367-505 (506)
243 KOG2360 Proliferation-associat 95.0 0.037 8E-07 62.2 5.9 151 41-201 212-392 (413)
244 KOG2915 tRNA(1-methyladenosine 95.0 0.1 2.2E-06 56.5 8.7 106 22-157 90-207 (314)
245 PRK11783 rlmL 23S rRNA m(2)G24 94.9 0.097 2.1E-06 64.3 9.6 104 41-157 189-345 (702)
246 PF09243 Rsm22: Mitochondrial 94.7 0.11 2.4E-06 56.6 8.4 47 30-77 22-68 (274)
247 PF04672 Methyltransf_19: S-ad 94.6 0.077 1.7E-06 57.5 6.9 122 44-177 70-208 (267)
248 COG1352 CheR Methylase of chem 94.6 0.1 2.2E-06 56.8 7.9 95 43-157 97-239 (268)
249 KOG2730 Methylase [General fun 94.5 0.043 9.2E-07 57.6 4.5 70 43-122 95-176 (263)
250 TIGR00006 S-adenosyl-methyltra 94.3 0.093 2E-06 58.1 6.9 73 40-119 18-100 (305)
251 PRK11524 putative methyltransf 94.2 0.16 3.5E-06 55.5 8.4 81 84-176 9-96 (284)
252 PF06962 rRNA_methylase: Putat 94.2 0.098 2.1E-06 51.6 6.0 85 69-164 1-97 (140)
253 PF05891 Methyltransf_PK: AdoM 94.1 0.13 2.9E-06 54.1 7.2 94 43-158 56-160 (218)
254 PRK10742 putative methyltransf 94.1 0.072 1.6E-06 57.2 5.2 68 41-121 85-174 (250)
255 COG4262 Predicted spermidine s 93.5 0.22 4.7E-06 55.9 7.7 102 40-162 287-410 (508)
256 KOG1331 Predicted methyltransf 93.5 0.12 2.7E-06 56.2 5.7 97 40-160 43-144 (293)
257 COG0286 HsdM Type I restrictio 93.4 0.13 2.9E-06 60.5 6.4 123 22-157 169-324 (489)
258 COG3897 Predicted methyltransf 93.3 0.12 2.5E-06 53.7 4.8 94 42-164 79-182 (218)
259 KOG3178 Hydroxyindole-O-methyl 93.1 0.29 6.2E-06 54.8 8.1 96 40-159 175-275 (342)
260 PF00398 RrnaAD: Ribosomal RNA 93.1 0.14 3.1E-06 55.1 5.6 69 41-120 29-106 (262)
261 PF13679 Methyltransf_32: Meth 92.9 0.14 3E-06 50.0 4.8 38 41-78 24-64 (141)
262 PF11599 AviRa: RRNA methyltra 92.9 0.86 1.9E-05 48.1 10.6 147 20-183 29-231 (246)
263 TIGR01444 fkbM_fam methyltrans 92.9 0.11 2.4E-06 49.9 4.0 48 45-93 1-59 (143)
264 COG0116 Predicted N6-adenine-s 91.9 0.63 1.4E-05 52.9 8.8 104 41-158 190-343 (381)
265 PF10354 DUF2431: Domain of un 91.0 1.1 2.5E-05 45.3 8.9 109 49-165 3-131 (166)
266 PRK13699 putative methylase; P 90.7 0.63 1.4E-05 49.4 7.0 77 85-174 3-86 (227)
267 COG3510 CmcI Cephalosporin hyd 90.5 1.9 4.1E-05 44.9 9.8 100 43-157 70-178 (237)
268 PF01861 DUF43: Protein of unk 89.6 1.3 2.7E-05 47.6 8.1 97 43-163 45-152 (243)
269 PF06016 Reovirus_L2: Reovirus 89.2 0.74 1.6E-05 58.7 7.0 86 110-202 568-657 (1289)
270 PF01795 Methyltransf_5: MraW 88.4 0.76 1.6E-05 51.1 5.7 73 40-119 18-101 (310)
271 cd00315 Cyt_C5_DNA_methylase C 88.4 0.59 1.3E-05 50.9 4.8 97 45-157 2-109 (275)
272 KOG1269 SAM-dependent methyltr 87.9 0.18 3.8E-06 57.3 0.4 95 41-159 109-215 (364)
273 PRK06398 aldose dehydrogenase; 87.6 8.8 0.00019 40.7 13.1 76 43-121 6-82 (258)
274 PRK07533 enoyl-(acyl carrier p 87.5 6.1 0.00013 41.9 11.8 79 42-121 9-98 (258)
275 PRK06179 short chain dehydroge 87.0 9.3 0.0002 40.4 12.9 78 43-122 4-84 (270)
276 PRK07984 enoyl-(acyl carrier p 86.7 9.6 0.00021 40.8 12.8 79 42-121 5-94 (262)
277 PF07942 N2227: N2227-like pro 86.6 3.7 8E-05 44.9 9.6 45 30-77 41-88 (270)
278 PF05206 TRM13: Methyltransfer 85.5 2.3 4.9E-05 46.3 7.3 68 29-96 5-87 (259)
279 PRK06171 sorbitol-6-phosphate 85.2 14 0.00031 38.9 13.2 77 43-121 9-87 (266)
280 KOG0024 Sorbitol dehydrogenase 85.1 4 8.6E-05 45.6 8.9 101 40-161 167-275 (354)
281 PRK07889 enoyl-(acyl carrier p 85.1 12 0.00025 39.8 12.5 114 43-157 7-143 (256)
282 PRK06940 short chain dehydroge 84.7 9.2 0.0002 41.1 11.6 73 45-121 4-86 (275)
283 PRK07806 short chain dehydroge 84.6 6.4 0.00014 40.9 10.1 113 43-157 6-132 (248)
284 PRK01747 mnmC bifunctional tRN 84.6 1.9 4.1E-05 52.7 6.9 127 8-157 22-204 (662)
285 PRK06079 enoyl-(acyl carrier p 84.3 11 0.00025 39.7 11.9 78 42-120 6-92 (252)
286 PRK08220 2,3-dihydroxybenzoate 84.3 17 0.00037 37.8 13.1 77 43-121 8-86 (252)
287 cd08283 FDH_like_1 Glutathione 84.2 4.7 0.0001 45.6 9.5 114 40-158 182-305 (386)
288 PRK08177 short chain dehydroge 84.2 13 0.00029 38.2 12.1 72 45-120 3-80 (225)
289 PRK06701 short chain dehydroge 83.6 14 0.00031 40.1 12.5 113 43-157 46-179 (290)
290 PRK06523 short chain dehydroge 83.5 16 0.00034 38.4 12.5 77 42-120 8-86 (260)
291 TIGR03589 PseB UDP-N-acetylglu 83.3 8.6 0.00019 42.5 10.9 70 43-121 4-84 (324)
292 PRK08594 enoyl-(acyl carrier p 83.3 18 0.00038 38.5 12.9 78 42-120 6-96 (257)
293 PRK06128 oxidoreductase; Provi 82.4 23 0.00049 38.5 13.6 113 43-157 55-189 (300)
294 COG4627 Uncharacterized protei 82.2 0.61 1.3E-05 46.8 1.2 44 110-162 46-89 (185)
295 PF00145 DNA_methylase: C-5 cy 82.0 1.2 2.7E-05 48.3 3.6 96 45-156 2-108 (335)
296 PRK08265 short chain dehydroge 81.8 19 0.00042 38.0 12.5 77 43-121 6-90 (261)
297 PRK08159 enoyl-(acyl carrier p 81.6 19 0.0004 38.8 12.4 115 42-157 9-146 (272)
298 COG5459 Predicted rRNA methyla 81.4 2.8 6E-05 47.2 5.9 34 44-77 115-148 (484)
299 PRK05993 short chain dehydroge 81.4 13 0.00028 39.9 11.0 78 43-121 4-86 (277)
300 PRK05717 oxidoreductase; Valid 81.0 22 0.00048 37.3 12.5 78 42-121 9-94 (255)
301 PRK06182 short chain dehydroge 80.9 17 0.00037 38.7 11.7 78 43-122 3-85 (273)
302 PF01555 N6_N4_Mtase: DNA meth 80.7 2.2 4.9E-05 43.5 4.8 48 112-159 1-56 (231)
303 KOG3115 Methyltransferase-like 80.3 0.94 2E-05 47.4 1.7 32 44-76 62-93 (249)
304 PRK06603 enoyl-(acyl carrier p 80.3 19 0.00041 38.3 11.8 78 42-120 7-95 (260)
305 COG1064 AdhP Zn-dependent alco 80.1 8.6 0.00019 43.4 9.3 88 40-158 164-258 (339)
306 PRK08324 short chain dehydroge 80.1 18 0.00038 44.6 12.9 78 42-121 421-508 (681)
307 PRK05693 short chain dehydroge 80.0 14 0.00031 39.3 10.8 76 45-122 3-83 (274)
308 PRK07576 short chain dehydroge 80.0 19 0.00042 38.2 11.7 77 42-120 8-95 (264)
309 COG1063 Tdh Threonine dehydrog 79.8 9.6 0.00021 42.9 9.8 97 42-160 168-270 (350)
310 PRK07326 short chain dehydroge 79.6 17 0.00036 37.4 10.9 77 43-121 6-92 (237)
311 PRK12481 2-deoxy-D-gluconate 3 79.6 17 0.00037 38.3 11.1 78 42-121 7-93 (251)
312 PRK08267 short chain dehydroge 79.6 21 0.00045 37.5 11.8 77 45-122 3-88 (260)
313 PRK07370 enoyl-(acyl carrier p 79.5 26 0.00056 37.2 12.5 79 42-121 5-97 (258)
314 KOG1209 1-Acyl dihydroxyaceton 79.3 15 0.00034 39.0 10.1 81 43-123 7-93 (289)
315 PRK08993 2-deoxy-D-gluconate 3 79.3 27 0.00058 36.7 12.5 78 42-121 9-95 (253)
316 PF07757 AdoMet_MTase: Predict 79.1 2.3 5.1E-05 40.3 3.8 34 41-77 57-90 (112)
317 PRK12744 short chain dehydroge 78.8 31 0.00067 36.2 12.8 113 43-157 8-143 (257)
318 PF04445 SAM_MT: Putative SAM- 78.6 2.1 4.5E-05 45.9 3.7 70 40-122 71-162 (234)
319 PRK06997 enoyl-(acyl carrier p 78.3 22 0.00048 37.8 11.6 77 43-120 6-93 (260)
320 PRK05786 fabG 3-ketoacyl-(acyl 77.8 31 0.00068 35.5 12.3 114 43-158 5-134 (238)
321 PRK06196 oxidoreductase; Provi 77.8 21 0.00046 39.1 11.5 78 42-121 25-109 (315)
322 PRK07578 short chain dehydroge 77.2 32 0.0007 34.6 11.9 100 45-157 2-109 (199)
323 cd08254 hydroxyacyl_CoA_DH 6-h 77.1 16 0.00035 39.6 10.3 96 39-158 162-262 (338)
324 PRK09072 short chain dehydroge 76.9 31 0.00067 36.3 12.2 77 42-121 4-90 (263)
325 PRK09186 flagellin modificatio 76.6 38 0.00082 35.3 12.6 77 42-120 3-92 (256)
326 PRK05872 short chain dehydroge 76.2 34 0.00074 37.1 12.5 79 42-122 8-96 (296)
327 PF03269 DUF268: Caenorhabditi 76.1 13 0.00027 38.0 8.1 112 43-162 2-114 (177)
328 PRK07063 short chain dehydroge 76.0 35 0.00075 35.9 12.2 77 43-121 7-96 (260)
329 PRK12937 short chain dehydroge 75.8 49 0.0011 34.1 13.1 114 42-157 4-137 (245)
330 PRK08643 acetoin reductase; Va 75.7 52 0.0011 34.4 13.4 77 43-121 2-89 (256)
331 PRK06077 fabG 3-ketoacyl-(acyl 75.5 36 0.00078 35.3 12.0 113 43-157 6-138 (252)
332 PRK07985 oxidoreductase; Provi 75.4 37 0.00081 36.9 12.6 113 43-157 49-183 (294)
333 PF12692 Methyltransf_17: S-ad 75.3 10 0.00022 38.0 7.2 99 44-157 30-132 (160)
334 PF04816 DUF633: Family of unk 74.9 16 0.00036 38.3 9.2 106 46-178 1-119 (205)
335 PRK07454 short chain dehydroge 74.9 29 0.00063 35.9 11.1 77 42-120 5-92 (241)
336 PRK06172 short chain dehydroge 74.9 46 0.001 34.7 12.7 77 43-121 7-94 (253)
337 PF00107 ADH_zinc_N: Zinc-bind 74.7 3.6 7.8E-05 38.6 3.9 87 53-162 2-92 (130)
338 PRK06500 short chain dehydroge 74.6 45 0.00098 34.4 12.5 77 43-121 6-90 (249)
339 PRK06505 enoyl-(acyl carrier p 74.6 36 0.00077 36.6 12.0 79 42-121 6-95 (271)
340 PRK07856 short chain dehydroge 74.6 51 0.0011 34.5 13.0 78 42-121 5-85 (252)
341 PRK07792 fabG 3-ketoacyl-(acyl 74.5 24 0.00051 38.6 10.8 77 42-121 11-99 (306)
342 cd05188 MDR Medium chain reduc 74.3 19 0.00041 37.3 9.6 95 39-157 131-230 (271)
343 PRK07062 short chain dehydroge 74.2 50 0.0011 34.7 12.9 77 42-120 7-96 (265)
344 PRK08219 short chain dehydroge 74.2 22 0.00049 36.1 9.9 72 44-121 4-81 (227)
345 PRK06463 fabG 3-ketoacyl-(acyl 74.1 42 0.00091 35.2 12.2 77 43-121 7-89 (255)
346 PRK08278 short chain dehydroge 74.0 45 0.00098 35.6 12.6 77 43-121 6-100 (273)
347 PRK08628 short chain dehydroge 74.0 51 0.0011 34.4 12.8 77 42-120 6-92 (258)
348 PRK08415 enoyl-(acyl carrier p 73.9 30 0.00066 37.3 11.3 79 42-121 4-93 (274)
349 PRK07231 fabG 3-ketoacyl-(acyl 73.9 51 0.0011 34.0 12.7 77 43-121 5-91 (251)
350 PF10237 N6-adenineMlase: Prob 73.8 68 0.0015 32.6 12.9 123 42-189 25-149 (162)
351 TIGR00675 dcm DNA-methyltransf 73.7 3 6.5E-05 46.4 3.6 64 46-122 1-70 (315)
352 PRK05867 short chain dehydroge 73.6 32 0.00068 36.1 11.1 78 42-121 8-96 (253)
353 PF03059 NAS: Nicotianamine sy 73.6 6.4 0.00014 43.3 5.9 120 44-185 122-259 (276)
354 PRK09242 tropinone reductase; 73.5 57 0.0012 34.1 13.1 78 42-121 8-98 (257)
355 KOG4022 Dihydropteridine reduc 73.1 51 0.0011 33.8 11.5 109 45-157 5-127 (236)
356 PRK08261 fabG 3-ketoacyl-(acyl 72.9 30 0.00065 40.0 11.6 78 42-121 209-294 (450)
357 PRK13394 3-hydroxybutyrate deh 72.8 56 0.0012 34.0 12.8 77 43-121 7-94 (262)
358 PRK07890 short chain dehydroge 72.7 37 0.00081 35.3 11.4 78 42-121 4-92 (258)
359 TIGR00497 hsdM type I restrict 72.6 27 0.00059 41.4 11.4 36 42-77 217-255 (501)
360 PRK12428 3-alpha-hydroxysteroi 72.4 16 0.00034 38.4 8.4 85 67-157 9-94 (241)
361 KOG3987 Uncharacterized conser 72.2 0.9 1.9E-05 47.6 -0.9 32 43-77 113-144 (288)
362 PF01555 N6_N4_Mtase: DNA meth 72.2 3.6 7.9E-05 42.0 3.5 34 41-77 190-223 (231)
363 PRK09424 pntA NAD(P) transhydr 72.0 23 0.00049 42.3 10.4 135 7-158 124-284 (509)
364 KOG2352 Predicted spermine/spe 71.9 13 0.00029 43.6 8.2 102 40-160 45-162 (482)
365 PF11861 DUF3381: Domain of un 71.7 14 0.0003 37.4 7.4 36 350-385 123-158 (159)
366 PRK06483 dihydromonapterin red 71.5 45 0.00098 34.4 11.6 75 44-120 3-83 (236)
367 PF06859 Bin3: Bicoid-interact 71.5 3.5 7.6E-05 39.1 2.9 44 111-159 1-44 (110)
368 TIGR03325 BphB_TodD cis-2,3-di 71.3 38 0.00082 35.7 11.1 76 43-120 5-88 (262)
369 PRK09135 pteridine reductase; 71.2 57 0.0012 33.5 12.3 78 42-121 5-95 (249)
370 PRK12829 short chain dehydroge 71.2 66 0.0014 33.5 12.9 79 42-122 10-97 (264)
371 PRK08277 D-mannonate oxidoredu 71.1 49 0.0011 35.1 12.0 77 42-120 9-96 (278)
372 PRK06200 2,3-dihydroxy-2,3-dih 71.0 38 0.00083 35.6 11.1 78 42-121 5-90 (263)
373 PRK08339 short chain dehydroge 71.0 44 0.00096 35.5 11.6 77 42-121 7-95 (263)
374 PRK07109 short chain dehydroge 70.7 39 0.00085 37.6 11.5 77 43-121 8-95 (334)
375 COG0270 Dcm Site-specific DNA 70.5 5.4 0.00012 44.6 4.7 118 44-175 4-138 (328)
376 PRK07067 sorbitol dehydrogenas 70.1 64 0.0014 33.8 12.5 76 43-120 6-89 (257)
377 PRK06194 hypothetical protein; 70.0 66 0.0014 34.3 12.8 78 43-122 6-94 (287)
378 PRK06550 fabG 3-ketoacyl-(acyl 70.0 70 0.0015 32.8 12.6 70 43-120 5-76 (235)
379 PRK08690 enoyl-(acyl carrier p 69.8 49 0.0011 35.1 11.7 80 42-122 5-95 (261)
380 PRK06180 short chain dehydroge 69.8 62 0.0014 34.5 12.5 78 43-122 4-89 (277)
381 PRK07453 protochlorophyllide o 69.7 73 0.0016 34.9 13.3 78 42-121 5-93 (322)
382 COG0451 WcaG Nucleoside-diphos 69.2 41 0.00088 36.0 11.0 68 46-122 3-75 (314)
383 PRK12823 benD 1,6-dihydroxycyc 69.0 56 0.0012 34.2 11.8 76 43-120 8-93 (260)
384 PRK12429 3-hydroxybutyrate deh 68.7 68 0.0015 33.3 12.3 77 43-121 4-91 (258)
385 PRK06914 short chain dehydroge 68.3 83 0.0018 33.4 13.0 76 43-121 3-91 (280)
386 PLN02695 GDP-D-mannose-3',5'-e 68.3 40 0.00088 38.1 11.1 87 26-121 4-95 (370)
387 PRK07825 short chain dehydroge 68.1 49 0.0011 35.0 11.2 78 43-122 5-89 (273)
388 PRK12939 short chain dehydroge 68.0 84 0.0018 32.4 12.7 77 43-121 7-94 (250)
389 TIGR03451 mycoS_dep_FDH mycoth 68.0 22 0.00048 39.6 8.8 94 40-157 174-274 (358)
390 PRK05884 short chain dehydroge 67.8 43 0.00093 34.7 10.4 71 45-120 2-78 (223)
391 PRK05650 short chain dehydroge 67.7 72 0.0016 33.8 12.4 76 45-122 2-88 (270)
392 PRK08264 short chain dehydroge 67.7 59 0.0013 33.4 11.5 73 43-121 6-83 (238)
393 PRK08589 short chain dehydroge 67.6 62 0.0013 34.5 11.9 77 43-121 6-92 (272)
394 PLN02253 xanthoxin dehydrogena 67.5 94 0.002 33.0 13.3 77 43-121 18-104 (280)
395 PRK06181 short chain dehydroge 67.5 67 0.0015 33.7 12.0 76 44-121 2-88 (263)
396 PLN02662 cinnamyl-alcohol dehy 67.2 66 0.0014 34.8 12.2 71 43-122 4-87 (322)
397 PRK12367 short chain dehydroge 67.1 72 0.0016 33.9 12.2 70 43-121 14-89 (245)
398 PRK06124 gluconate 5-dehydroge 67.1 83 0.0018 32.8 12.6 78 42-121 10-98 (256)
399 PRK06057 short chain dehydroge 67.0 58 0.0013 34.1 11.4 77 42-120 6-88 (255)
400 PRK06114 short chain dehydroge 66.8 92 0.002 32.6 12.9 78 42-121 7-96 (254)
401 PRK10458 DNA cytosine methylas 66.8 7.9 0.00017 45.6 5.1 51 43-95 88-147 (467)
402 PRK07774 short chain dehydroge 66.7 58 0.0012 33.8 11.2 77 43-121 6-93 (250)
403 PHA03108 poly(A) polymerase sm 66.6 40 0.00087 37.1 9.9 62 43-105 61-129 (300)
404 KOG2352 Predicted spermine/spe 66.6 13 0.00028 43.7 6.7 137 42-182 295-441 (482)
405 PRK07814 short chain dehydroge 66.2 78 0.0017 33.4 12.2 78 42-121 9-97 (263)
406 PRK11524 putative methyltransf 66.0 6.1 0.00013 43.2 3.8 34 41-77 207-240 (284)
407 PRK08226 short chain dehydroge 65.9 97 0.0021 32.5 12.8 77 43-121 6-92 (263)
408 KOG2651 rRNA adenine N-6-methy 65.8 7.3 0.00016 44.4 4.4 36 40-77 151-186 (476)
409 KOG1709 Guanidinoacetate methy 65.6 17 0.00037 38.7 6.7 95 41-157 100-204 (271)
410 PRK06197 short chain dehydroge 65.6 68 0.0015 34.8 11.9 78 42-121 15-105 (306)
411 KOG3201 Uncharacterized conser 65.4 6.7 0.00015 39.9 3.6 108 43-164 30-143 (201)
412 KOG1562 Spermidine synthase [A 65.4 42 0.0009 37.4 9.8 99 42-157 121-234 (337)
413 TIGR02632 RhaD_aldol-ADH rhamn 65.2 60 0.0013 40.1 12.6 77 43-121 414-503 (676)
414 PRK07024 short chain dehydroge 65.1 1.2E+02 0.0027 31.7 13.4 77 44-122 3-89 (257)
415 PRK06841 short chain dehydroge 65.1 82 0.0018 32.8 12.0 78 42-121 14-99 (255)
416 PRK06484 short chain dehydroge 65.0 48 0.001 38.9 11.3 77 42-120 4-88 (520)
417 PLN00198 anthocyanidin reducta 64.9 89 0.0019 34.4 12.8 70 43-121 9-90 (338)
418 PRK08340 glucose-1-dehydrogena 64.8 68 0.0015 33.7 11.4 74 45-120 2-85 (259)
419 PRK08251 short chain dehydroge 64.8 1E+02 0.0022 31.9 12.6 77 43-121 2-91 (248)
420 PRK06484 short chain dehydroge 64.6 57 0.0012 38.3 11.8 113 43-157 269-398 (520)
421 TIGR01832 kduD 2-deoxy-D-gluco 64.5 59 0.0013 33.7 10.8 78 42-121 4-90 (248)
422 PRK07666 fabG 3-ketoacyl-(acyl 64.5 99 0.0021 31.9 12.4 78 43-122 7-95 (239)
423 PRK05876 short chain dehydroge 64.4 78 0.0017 34.0 12.0 77 43-121 6-93 (275)
424 PRK07478 short chain dehydroge 64.4 91 0.002 32.6 12.2 77 43-121 6-93 (254)
425 PRK06953 short chain dehydroge 64.3 60 0.0013 33.2 10.7 73 45-121 3-80 (222)
426 PRK08263 short chain dehydroge 63.8 66 0.0014 34.2 11.2 77 43-121 3-87 (275)
427 PRK06101 short chain dehydroge 63.8 78 0.0017 32.9 11.5 71 45-120 3-80 (240)
428 PRK07577 short chain dehydroge 63.6 1.3E+02 0.0029 30.6 13.1 75 43-121 3-78 (234)
429 PRK08303 short chain dehydroge 63.6 1.3E+02 0.0027 33.2 13.6 76 42-119 7-103 (305)
430 PRK12748 3-ketoacyl-(acyl-carr 63.6 82 0.0018 33.0 11.7 78 43-121 5-105 (256)
431 PRK08085 gluconate 5-dehydroge 63.5 76 0.0016 33.2 11.4 78 42-121 8-96 (254)
432 PRK05854 short chain dehydroge 63.5 1.1E+02 0.0023 33.7 13.1 78 42-121 13-103 (313)
433 PRK12384 sorbitol-6-phosphate 63.5 78 0.0017 33.1 11.5 76 44-121 3-91 (259)
434 PF03686 UPF0146: Uncharacteri 63.4 54 0.0012 32.1 9.2 93 43-164 14-107 (127)
435 TIGR02622 CDP_4_6_dhtase CDP-g 63.1 88 0.0019 34.7 12.4 72 42-120 3-84 (349)
436 PRK12826 3-ketoacyl-(acyl-carr 63.0 1.1E+02 0.0025 31.4 12.5 77 43-121 6-93 (251)
437 PRK12742 oxidoreductase; Provi 62.7 87 0.0019 32.1 11.6 73 43-121 6-85 (237)
438 PLN02989 cinnamyl-alcohol dehy 62.7 73 0.0016 34.7 11.5 71 42-121 4-87 (325)
439 PRK07523 gluconate 5-dehydroge 62.6 76 0.0016 33.2 11.2 79 42-122 9-98 (255)
440 PRK06935 2-deoxy-D-gluconate 3 62.5 70 0.0015 33.5 11.0 78 42-121 14-101 (258)
441 PRK06198 short chain dehydroge 62.5 77 0.0017 33.1 11.3 78 42-121 5-94 (260)
442 PRK09987 dTDP-4-dehydrorhamnos 62.4 49 0.0011 36.0 10.1 64 45-122 2-65 (299)
443 PRK07097 gluconate 5-dehydroge 62.4 95 0.0021 32.7 12.0 78 42-121 9-97 (265)
444 PRK06138 short chain dehydroge 62.4 96 0.0021 32.1 11.9 77 43-121 5-91 (252)
445 PRK07677 short chain dehydroge 62.3 1E+02 0.0023 32.1 12.2 76 43-120 1-87 (252)
446 TIGR03206 benzo_BadH 2-hydroxy 62.3 1E+02 0.0022 31.9 12.0 76 43-120 3-89 (250)
447 PLN02896 cinnamyl-alcohol dehy 61.8 65 0.0014 35.8 11.1 72 42-122 9-90 (353)
448 PF02254 TrkA_N: TrkA-N domain 61.7 18 0.0004 33.3 5.7 91 51-162 4-99 (116)
449 PRK12828 short chain dehydroge 61.5 1.3E+02 0.0028 30.6 12.6 76 43-120 7-91 (239)
450 KOG1227 Putative methyltransfe 61.4 2.7 5.9E-05 46.4 0.0 93 39-160 191-296 (351)
451 PRK12747 short chain dehydroge 61.1 1.1E+02 0.0023 32.0 12.0 114 43-157 4-142 (252)
452 KOG4169 15-hydroxyprostaglandi 60.5 48 0.001 35.8 9.0 76 43-120 5-92 (261)
453 PRK12743 oxidoreductase; Provi 60.0 1.3E+02 0.0027 31.6 12.4 77 43-121 2-90 (256)
454 PRK05599 hypothetical protein; 60.0 1.1E+02 0.0024 32.1 11.9 75 45-121 2-87 (246)
455 PRK09009 C factor cell-cell si 59.9 1.4E+02 0.0031 30.6 12.6 71 45-121 2-77 (235)
456 TIGR03201 dearomat_had 6-hydro 59.7 41 0.00088 37.3 9.0 36 40-77 164-200 (349)
457 PLN02427 UDP-apiose/xylose syn 59.7 46 0.001 37.5 9.6 70 43-121 14-96 (386)
458 KOG2798 Putative trehalase [Ca 59.6 21 0.00046 39.9 6.4 31 43-76 151-181 (369)
459 PRK07791 short chain dehydroge 59.4 1.1E+02 0.0024 33.0 12.1 78 42-121 5-102 (286)
460 PLN02657 3,8-divinyl protochlo 59.3 79 0.0017 36.1 11.4 74 42-120 59-145 (390)
461 COG2384 Predicted SAM-dependen 59.3 93 0.002 33.3 10.8 70 39-120 13-94 (226)
462 PLN02260 probable rhamnose bio 59.1 1E+02 0.0022 37.8 13.0 72 43-121 6-90 (668)
463 cd05278 FDH_like Formaldehyde 58.9 46 0.001 36.3 9.2 96 40-157 165-265 (347)
464 PF01234 NNMT_PNMT_TEMT: NNMT/ 58.8 8.6 0.00019 41.8 3.3 40 111-158 158-198 (256)
465 PRK12824 acetoacetyl-CoA reduc 58.8 1.4E+02 0.0031 30.5 12.4 74 45-120 4-89 (245)
466 COG1748 LYS9 Saccharopine dehy 58.4 20 0.00044 41.3 6.3 69 44-122 2-79 (389)
467 PRK06113 7-alpha-hydroxysteroi 57.9 1.1E+02 0.0024 31.9 11.6 78 42-121 10-98 (255)
468 PRK15181 Vi polysaccharide bio 57.9 56 0.0012 36.4 9.7 71 42-121 14-100 (348)
469 PLN03154 putative allyl alcoho 57.6 71 0.0015 35.7 10.5 93 40-157 156-256 (348)
470 PRK10538 malonic semialdehyde 57.3 1.5E+02 0.0033 30.8 12.4 75 45-121 2-84 (248)
471 KOG1201 Hydroxysteroid 17-beta 57.0 1.5E+02 0.0032 33.2 12.3 78 42-123 37-126 (300)
472 PRK08862 short chain dehydroge 56.8 1.3E+02 0.0028 31.4 11.7 77 42-120 4-92 (227)
473 PRK07060 short chain dehydroge 56.5 88 0.0019 32.2 10.3 74 42-121 8-87 (245)
474 PLN02653 GDP-mannose 4,6-dehyd 56.2 1.1E+02 0.0024 33.6 11.7 72 43-121 6-93 (340)
475 TIGR01181 dTDP_gluc_dehyt dTDP 56.1 74 0.0016 34.0 10.0 65 51-121 6-83 (317)
476 PF00106 adh_short: short chai 55.9 84 0.0018 30.3 9.5 77 45-123 2-92 (167)
477 KOG1205 Predicted dehydrogenas 55.8 97 0.0021 34.3 10.8 115 42-157 11-147 (282)
478 PRK07074 short chain dehydroge 55.8 1.9E+02 0.004 30.2 12.8 76 44-121 3-87 (257)
479 PRK11908 NAD-dependent epimera 55.8 73 0.0016 35.3 10.1 68 45-121 3-78 (347)
480 PRK05866 short chain dehydroge 55.7 1.5E+02 0.0034 32.1 12.5 77 43-121 40-127 (293)
481 PRK13699 putative methylase; P 55.6 13 0.00027 39.6 3.9 34 41-77 162-195 (227)
482 PRK08217 fabG 3-ketoacyl-(acyl 55.2 2.2E+02 0.0048 29.2 13.2 76 43-120 5-91 (253)
483 PRK08063 enoyl-(acyl carrier p 55.2 1.2E+02 0.0026 31.3 11.2 77 43-121 4-92 (250)
484 TIGR02415 23BDH acetoin reduct 54.9 1.5E+02 0.0033 30.6 11.9 75 45-121 2-87 (254)
485 PRK06482 short chain dehydroge 54.6 1.6E+02 0.0034 31.3 12.1 75 44-121 3-86 (276)
486 cd08237 ribitol-5-phosphate_DH 54.6 39 0.00085 37.5 7.8 37 40-77 161-199 (341)
487 PRK07035 short chain dehydroge 54.5 98 0.0021 32.2 10.4 76 43-120 8-94 (252)
488 PRK06139 short chain dehydroge 54.4 1.4E+02 0.0031 33.3 12.2 77 43-121 7-94 (330)
489 PRK06720 hypothetical protein; 54.3 1.3E+02 0.0028 30.4 10.8 77 42-120 15-102 (169)
490 PRK05875 short chain dehydroge 54.3 1.5E+02 0.0033 31.3 11.9 76 43-120 7-95 (276)
491 KOG1197 Predicted quinone oxid 54.2 36 0.00077 37.3 6.8 95 40-157 144-243 (336)
492 PRK07904 short chain dehydroge 52.7 2.3E+02 0.0049 29.9 12.9 77 41-120 6-96 (253)
493 PRK08213 gluconate 5-dehydroge 52.7 2.1E+02 0.0046 29.9 12.6 77 42-120 11-98 (259)
494 PLN02572 UDP-sulfoquinovose sy 52.4 1.3E+02 0.0028 35.1 11.8 72 43-121 47-146 (442)
495 PRK06949 short chain dehydroge 52.4 1.8E+02 0.0039 30.2 12.0 78 42-121 8-96 (258)
496 PRK07023 short chain dehydroge 52.3 1.4E+02 0.0031 30.8 11.2 76 45-121 3-87 (243)
497 TIGR01963 PHB_DH 3-hydroxybuty 52.2 1.8E+02 0.0039 30.0 11.9 76 44-121 2-88 (255)
498 PRK05855 short chain dehydroge 52.2 1.1E+02 0.0024 36.0 11.4 78 43-122 315-403 (582)
499 PRK12935 acetoacetyl-CoA reduc 52.2 2E+02 0.0044 29.7 12.2 78 43-122 6-95 (247)
500 PRK07102 short chain dehydroge 52.1 1.3E+02 0.0029 31.0 10.9 72 44-120 2-85 (243)
No 1
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=100.00 E-value=1.4e-177 Score=1467.79 Aligned_cols=754 Identities=43% Similarity=0.698 Sum_probs=635.5
Q ss_pred CCCcc--CCCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC
Q 003302 1 MGKVK--GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI 78 (832)
Q Consensus 1 mgk~k--~k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~ 78 (832)
|||++ ||+|+|+||++|++.|||+|+||||+|||.+|.||.+++.||||||+||||+|++++.||+++.||||||.||
T Consensus 1 MGKk~~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 1 MGKKKKSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred CCccccCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 99943 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 79 APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 79 ~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.|+|+|.+++.|||+..|+..++..+..|++ |||||||+||||+.|.+|+|.|++|++.+|++|+.+|+.||+||++
T Consensus 81 kp~~~c~t~v~dIttd~cr~~l~k~l~t~~a---dvVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 81 KPIPNCDTLVEDITTDECRSKLRKILKTWKA---DVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred ccCCccchhhhhhhHHHHHHHHHHHHHhCCC---cEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccchhhhcccCCCC-ccccccccccccc
Q 003302 159 VFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGSVEP-RKVVDVLRGTKQK 237 (832)
Q Consensus 159 VFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~~vf~~~~~~-~~~~~~~~~~~~k 237 (832)
+|++.+|+.|+|+|.++|.+|++++|++||..|+|+||||.||++|++++|+++||.+||.++..+ ...+.+|+|+||+
T Consensus 158 vfrs~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l~P~~~dp~~ld~~~vf~e~~~~a~~~~~~l~~eKkk 237 (780)
T KOG1098|consen 158 VFRSEDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYLAPKKVDPRLLDPKLVFEEFPDGAKKQVKLLGPEKKK 237 (780)
T ss_pred cccCCcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeecccCccccCccccCHHHHHhhcccccccchhhcCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998654 4568999999988
Q ss_pred cCCCCccCCCceeeeccchhhhhcCCChhHhhcccceeeecCccccccccCCCChHHHHHhhhhhhhcCHHHHHHHHHHH
Q 003302 238 RHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCDDLRVLGKQDFKHLLKWR 317 (832)
Q Consensus 238 ~~~~gy~~~~~~~~~~~~~~~f~~~~~p~~~l~~~~~i~f~~~~~~~~~~~~~tt~ei~~~c~Dlkvlgk~d~~~llkwr 317 (832)
|. +||++|+++|||+++++|||+++|||+|||++|+|+|||++|+ +|+.||+||++||+||+|||++|||.||+||
T Consensus 238 r~-eGY~~~d~~L~~~~satdFlrsenpld~Lg~~~~I~iDDe~~~---nh~~TTeEi~~cc~DLkVLGkkd~r~iLrWR 313 (780)
T KOG1098|consen 238 RA-EGYEDDDLALHKTLSATDFLRSENPLDILGTANEITIDDEEWK---NHKKTTEEILECCKDLKVLGKKDFRVILRWR 313 (780)
T ss_pred cc-cCcccchHHHHHHhHHHHHHhhcCHHHHHhccceEEeCCHHHh---cCccCcHHHHHHHHHhhhhChHHHHHHHHHH
Confidence 88 9999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHhcccccccCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-ccccC
Q 003302 318 MQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGMQI-DVMQD 396 (832)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ee~~~~~el~~l~~~~~~~~kr~kkk~~~~k~k~~~r~~~~m~~-~~~~~ 396 (832)
++||+.+ +...+ . .+.+..+..+++++|+++|++.|++|.+.+.+..||+||+.++.+||+++||+|+|.+ ++|+.
T Consensus 314 k~ire~l-~~~~~-v-~~~e~~e~e~~plteEeeld~~l~~l~E~e~~~lkRkkkk~~k~k~k~~~r~~l~m~~~gd~g~ 390 (780)
T KOG1098|consen 314 KKIRETL-GEQKK-V-VDGEADEVEEEPLTEEEELDKLLAELSEDEKAALKRKKKKALKAKAKELERMELKMIIPGDIGP 390 (780)
T ss_pred HHHHHHh-ccccc-c-ccccccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCh
Confidence 9999998 44332 1 1113334444778999999999999999999999999999999999999999999999 88888
Q ss_pred CCCCcccccccccccchhhhhhhcCCccccccccCCcccCCCCCccccCCCCCCchHHHhHHHHHHHHHHHHHHHHHHHH
Q 003302 397 DYTDHELFSLSSIKGKKDLAAVEYDDDDVNAAAEDSEDERPNRDTQEHVSSDIDSDEERRKYDEQLEEVLDQAYENYVAK 476 (832)
Q Consensus 397 ~~~~~~lF~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~le~~~d~~~~~~~~~ 476 (832)
+..+.+||+|++|.+++.|..|.++.+.+.++ ....+ +.++++. + .| +.+.|+++|+.||..|..+
T Consensus 391 ~~ee~elF~L~~ir~~~~L~el~~~~~avD~e-----~~~d~-~~~~d~~-d--~D-----e~~~l~sdld~~~~~y~~~ 456 (780)
T KOG1098|consen 391 EAEEQELFSLKTIRKSKELAELTKDTQAVDEE-----LSEDG-DSDIDES-D--ED-----EDDGLNSDLDEMELDYTER 456 (780)
T ss_pred hhhhhhHHHHHHHhcchhHHHHhcCCcCCChh-----hhccC-Ccccccc-c--cc-----cccccccchhhhHhhhhhh
Confidence 87788999999999999999999988743111 11101 1111111 1 11 1157889999999999999
Q ss_pred hCCChHHHHHHHH-hhhhhhcccCCCCccccccCCC-CCCCCCCCCcCCCCcccCCCCCCCChHHHHhhhhccchhhhhc
Q 003302 477 RGGSTMQRKRAKK-AYAQEDQLSEGDEDEDTMHTSY-DSDKDQGDLDANPLMVPLDDGIRPTQEEITNKWFSQEIFAEAV 554 (832)
Q Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~wF~~~~f~~~~ 554 (832)
+.+.+.++++++. ...+. ++|.|.++.++++... +...-+...+.+++++++++ ...++..++++||++|||++
T Consensus 457 ~~e~~~~~r~~~~~~~~~e-ee~~gl~e~d~de~~~ie~~~~e~~se~~~~~~~~~d-k~~~kegk~~~~f~~~if~~-- 532 (780)
T KOG1098|consen 457 RDESEMKKRAKKAEGQIEE-EEWSGLEEGDEDEKNAIEKNGREKKSENDELTVSFDD-KKGKKEGKARMWFEDDIFNN-- 532 (780)
T ss_pred hhHHHHHHHhhhhhhhhhh-hhhcCCccccchhhhhhhhccccccccccccccchhh-cccchhhhccccccCccccc--
Confidence 9999999998888 44444 7899854321111100 00011224456788888887 44466679999999999998
Q ss_pred cCCCCCCCCCCchhhhhhhhhccCCchHHhhhhccccCCCCCCCCCcCCCCCCceeecCCCCC-------CCCCCCCCcc
Q 003302 555 QNGDLGKLGSEDETQVDKQAEKHSIPEKAKQKMANDAAGPKSTHNQVSEVEGDFEIVPAPGAD-------SSDDSSSDES 627 (832)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~feiv~~~~~~-------~~~~~~~~~~ 627 (832)
.+++++.++.+..... ....+.+. ....+. +....+..++..+|++|..... ++++....
T Consensus 533 ed~d~~~e~s~~~~~~-~~~~~~e~---l~~~d~-------~~d~~de~~~~~~E~~~~~s~se~~d~~~dsd~~~~~-- 599 (780)
T KOG1098|consen 533 EDADEGTEDSESSDAE-MKKKKKEK---LSKSDD-------DIDKSDEDEEERYEDLPNSSASESCDADIDSDSLKPV-- 599 (780)
T ss_pred cccccccccccchHHH-Hhhhhhhh---cCcccc-------cccccchhhhhhccccccccccccccccccccccCch--
Confidence 2444433222211111 01111000 000000 0011112234567777765321 11111111
Q ss_pred ccccccccHHHHHHHHHHh-hhhhhhHHhhhcccccCCCCCCCCchhHHHHHhhcCCCCCCCHHHHHHHHHHhhhhccCc
Q 003302 628 EDEEVDTKAEILACAKKML-RKKQREQILDDAYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDARP 706 (832)
Q Consensus 628 ~~~~~~~~ae~lala~~m~-~kK~r~dLiD~ayNRYaF~D~~LP~WF~dDE~kH~kp~~PiTKE~v~~~K~k~reinaRP 706 (832)
.++++ +|||+||||++|+ ++|+|+||||+|||||||||+|||+||++||++||+||.|||||+|++||+||+||||||
T Consensus 600 ~k~~~-lt~E~mal~~~~a~~kK~r~dliDea~NRyaf~dE~LP~WF~dDEk~h~~~~kPvtKe~v~a~rer~keiNARP 678 (780)
T KOG1098|consen 600 EKKRI-LTPEEMALGAQMARSKKARRDLIDEAWNRYAFNDEGLPDWFVDDEKQHYKKQKPVTKEEVAAYRERMKEINARP 678 (780)
T ss_pred hhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccchHHHhhHHHhccCCCCCCHHHHHHHHHHHHHhcccc
Confidence 24554 9999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHhhCC-CCCCceEEEeeccccc--CCCCCc-c
Q 003302 707 AKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVP-KRPKKEYVVAKKGVQV--RAGKGK-V 782 (832)
Q Consensus 707 IKKVaEAKARKK~Ra~krLekakkKAe~I~e~~dmse~eKak~I~klykKa~~-kK~~~~yVVakkg~~~--kGvKGr-K 782 (832)
|||||||||||||||++|||+++|||++|+++.|||++||+++|++||++|.+ +|++++|||+++|..| +| ||+ |
T Consensus 679 iKKVaEAkARKkrra~kRLek~kKKAe~I~d~~d~te~eK~kei~klykkA~~k~K~k~~lVv~kkg~~grP~G-KGkyK 757 (780)
T KOG1098|consen 679 IKKVAEAKARKKRRAQKRLEKVKKKAELISDTSDITEREKAKEIKKLYKKATKKPKAKPTLVVAKKGLVGRPKG-KGKYK 757 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHhccCCCCCceEEEecCCccCCcCC-CCcee
Confidence 99999999999999999999999999999999999999999999999999998 5888899999999544 66 999 9
Q ss_pred cccccccchhhhccC
Q 003302 783 LVDPRMKKDSRTHGS 797 (832)
Q Consensus 783 ~VD~RMKKD~Ra~kr 797 (832)
|||+|||||+||+++
T Consensus 758 ~VD~RmKkD~Ra~~a 772 (780)
T KOG1098|consen 758 MVDSRMKKDKRARKA 772 (780)
T ss_pred eechhhhhhHHHHhh
Confidence 999999999999996
No 2
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=100.00 E-value=2.1e-68 Score=542.98 Aligned_cols=197 Identities=52% Similarity=0.850 Sum_probs=172.7
Q ss_pred CCCCceeecCCCCCCCCCCCC-----CccccccccccHHHHHHHHHHhhhhhhhHHhhhcccccCCCCC-CCCchhHHHH
Q 003302 604 VEGDFEIVPAPGADSSDDSSS-----DESEDEEVDTKAEILACAKKMLRKKQREQILDDAYNRYMFDDD-GLPDWFLEEE 677 (832)
Q Consensus 604 ~~~~feiv~~~~~~~~~~~~~-----~~~~~~~~~~~ae~lala~~m~~kK~r~dLiD~ayNRYaF~D~-~LP~WF~dDE 677 (832)
++++||+||.......+++.. +...+.+ .++||+||||++|+++|+|+||||+|||||||||+ |||+||++||
T Consensus 5 ~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ae~laLa~~m~~kk~r~dlID~~yNRyaf~D~d~LP~WF~eDE 83 (215)
T PF07780_consen 5 SDDEFEVVPEEEKDEEDDSDEDDEEDDSDDEDD-ELTAEALALATKMISKKTRRDLIDDSYNRYAFNDDDGLPDWFVEDE 83 (215)
T ss_pred hhchhhhcccccccccccchhcccccccccccc-ccCHHHHHHHHHHhhhhhHHHHHHhhccccccCCCCCCchhHHHHH
Confidence 456788888775322211111 1001222 48999999999999999999999999999999999 9999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhhhhccCchhhHHHHHHHhhHHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHhh
Q 003302 678 RRHRQAIRPVTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKRKQIEQLYKSA 757 (832)
Q Consensus 678 ~kH~kp~~PiTKE~v~~~K~k~reinaRPIKKVaEAKARKK~Ra~krLekakkKAe~I~e~~dmse~eKak~I~klykKa 757 (832)
++||+|++|||+|+|++||++|++|||||||||+|||||||+|+++||++|++||++|++++||||+||+++|++||++|
T Consensus 84 ~kH~k~~~Pvtke~v~~~k~k~~einaRPIKKV~EAkaRKK~Ra~kklek~kkKa~~I~~~~d~se~eK~~~i~kl~kka 163 (215)
T PF07780_consen 84 KKHNKPQLPVTKEEVAEYKEKLREINARPIKKVAEAKARKKRRAAKKLEKAKKKAEAIADDEDMSEREKAKQIKKLYKKA 163 (215)
T ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CCCCceEEEeecccc-----cCCCCCc-ccccccccchhhhccCcccc
Q 003302 758 VP--KRPKKEYVVAKKGVQ-----VRAGKGK-VLVDPRMKKDSRTHGSGKAR 801 (832)
Q Consensus 758 ~~--kK~~~~yVVakkg~~-----~kGvKGr-K~VD~RMKKD~Ra~kr~~kk 801 (832)
.+ ++++++||||++|.+ ++||+|+ ||||+|||||+||+||++++
T Consensus 164 ~~~~~kk~~~~VVakk~~~~~~~rp~Gvkg~~K~VD~RmKKD~Ra~kr~~kk 215 (215)
T PF07780_consen 164 KKKKKKKKVKYVVAKKGNRGKKGRPKGVKGRYKMVDPRMKKDKRAQKRKEKK 215 (215)
T ss_pred hccCCCCCcEEEecCCCCCCCCCCCCCCCCCeeeECchhhhHHHHHHHHhcC
Confidence 87 355569999997732 2999999 99999999999999998875
No 3
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=100.00 E-value=1e-44 Score=366.77 Aligned_cols=211 Identities=37% Similarity=0.661 Sum_probs=196.7
Q ss_pred CCCccCCCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCC----CC----EEEE
Q 003302 1 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV----GS----LVLG 72 (832)
Q Consensus 1 mgk~k~k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~----~~----~ViG 72 (832)
||+ .+|..+|-|||+||++|||+|++|||+||++.|++|..-.+|+||||+||+|+|+|++.+-. .+ +||+
T Consensus 1 MGk-tskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVa 79 (294)
T KOG1099|consen 1 MGK-TSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVA 79 (294)
T ss_pred CCC-ccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEE
Confidence 884 35678899999999999999999999999999999999899999999999999999987632 11 3999
Q ss_pred EeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC
Q 003302 73 LDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK 152 (832)
Q Consensus 73 VDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG 152 (832)
|||++|.||++|..+|+|||...|...|..+|.+.++ |+|+|||+|.+.|.+..|.|.|.+|++.+|..++.+|+||
T Consensus 80 VDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekA---dlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 80 VDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKA---DLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred EecccCCccCceEEeecccCCHhHHHHHHHHhCCCCc---cEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 9999999999999999999999999999999988666 9999999999999999999999999999999999999999
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccchh
Q 003302 153 GTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVK 215 (832)
Q Consensus 153 G~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~ 215 (832)
|+||.|+||+.+..-|-..|+.+|.+|.+.||.+||+.|-|.||||.+|-.|..+.|.+-.|.
T Consensus 157 g~FVaKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~pp~g~~P~~~~~~ 219 (294)
T KOG1099|consen 157 GSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYCPPEGFIPDLGTPL 219 (294)
T ss_pred CeeehhhhccCchHHHHHHHHHHhhceeeecCCccccccceeeeeecccCCccCCCCCCCCcc
Confidence 999999999999877778999999999999999999999999999999999999888885554
No 4
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-44 Score=363.84 Aligned_cols=196 Identities=38% Similarity=0.678 Sum_probs=190.4
Q ss_pred CCCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCce
Q 003302 6 GKHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAV 85 (832)
Q Consensus 6 ~k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~ 85 (832)
.+++.|.||+.|+..||||||+|||+||+++|.+|.+|++||||||+||||+|++++.++..+.|+|||+.||.++++|.
T Consensus 9 ~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~ 88 (205)
T COG0293 9 AEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVI 88 (205)
T ss_pred HHhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCce
Confidence 67899999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred EEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 86 SLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 86 ~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
++++|||...+...|...+..++ +|+|+||++||++|.|..|++.+.+|+..++..|..+|+|||.|++|+|++.++
T Consensus 89 ~iq~d~~~~~~~~~l~~~l~~~~---~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 89 FLQGDITDEDTLEKLLEALGGAP---VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred EEeeeccCccHHHHHHHHcCCCC---cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 99999999999999999988744 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 166 SSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 166 ~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
+.+++.++++|..|+++||.+||..|+|+|+||.+|+++
T Consensus 166 ~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~~ 204 (205)
T COG0293 166 EDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204 (205)
T ss_pred HHHHHHHHHhhceeEEecCccccCCCceEEEEEeccccC
Confidence 999999999999999999999999999999999999875
No 5
>PF11861 DUF3381: Domain of unknown function (DUF3381); InterPro: IPR024576 This uncharacterised domain is found in eukaryotic rRNA methyltransferases like yeast Spb1 and mammalian homologue Ftsj3. Spb1 is required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [, ].
Probab=100.00 E-value=1.3e-43 Score=350.22 Aligned_cols=159 Identities=42% Similarity=0.659 Sum_probs=141.1
Q ss_pred cccccccccCCCCccCCCceeeeccchhhhhcCCChhHhhcccceeeecCccccccccCCCChHHHHHhhhhhhhcCHHH
Q 003302 230 VLRGTKQKRHRDGYEDGDTTLRKVSLATDFIWSNNPLEILGSVTSITFGDPACSAIKDHELTTEEVKALCDDLRVLGKQD 309 (832)
Q Consensus 230 ~~~~~~~k~~~~gy~~~~~~~~~~~~~~~f~~~~~p~~~l~~~~~i~f~~~~~~~~~~~~~tt~ei~~~c~Dlkvlgk~d 309 (832)
||+|++|||+|+||++|+|||||++||+|||+|+||+++|+++|+|+|++ ++..|.+||+||+||++||+|||||||+|
T Consensus 1 v~~p~kkKr~reGY~egd~tl~~~~~~~dFi~s~dpi~~L~~~~~i~fdd-~~~~i~~h~~TT~EIk~~c~DLKVLGk~d 79 (159)
T PF11861_consen 1 VFKPEKKKRKREGYEEGDYTLYKTISASDFIKSEDPIDLLGSANEIVFDD-ASKEILKHPLTTEEIKECCKDLKVLGKKD 79 (159)
T ss_pred CCCCCCCCCCCCCcCCCCceeeeeccHHHHhcCCcHHHHHHHcCeeeecc-hHHHHHcCCCCcHHHHHHHHHHHhcCHHH
Confidence 68999999999999999999999999999999999999999999999988 88889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 003302 310 FKHLLKWRMQIKKAFSSAEKATVPASASAPTEGENEEDADNRVLNEMEELKYAMDQRKKREKKLLAKKRAKDKARKATGM 389 (832)
Q Consensus 310 ~~~llkwr~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ee~~~~~el~~l~~~~~~~~kr~kkk~~~~k~k~~~r~~~~m 389 (832)
|++|||||.+||+.+ +...+......++...+.++++++++++++|+++.+.+.++.+|++|+.+++++|.+.|++++|
T Consensus 80 ~k~LLKWR~kir~~~-~~~~~~~~~~~~~~~~e~~~~deee~~d~el~~~~e~~~~~~k~e~kk~~k~k~K~~~k~~~~m 158 (159)
T PF11861_consen 80 FKQLLKWRKKIRKEL-GKDKKEEEEEEEEEEEEVEEDDEEEEIDEELEELQEKELAELKREKKKENKRKQKKILKEQLKM 158 (159)
T ss_pred HHHHHHHHHHHHHHH-hHhhhcccccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998 4332222110111222237788899999999999999999999999999999999999999999
Q ss_pred c
Q 003302 390 Q 390 (832)
Q Consensus 390 ~ 390 (832)
+
T Consensus 159 ~ 159 (159)
T PF11861_consen 159 T 159 (159)
T ss_pred C
Confidence 6
No 6
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.4e-38 Score=314.33 Aligned_cols=195 Identities=36% Similarity=0.613 Sum_probs=187.9
Q ss_pred CCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceE
Q 003302 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVS 86 (832)
Q Consensus 7 k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~ 86 (832)
+|..|.|...||.+.||+|+||||+|||++|.||.|+.+|||+||+||+|+|++.+++.+++.|+||||.++.|++|+++
T Consensus 34 Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~ 113 (232)
T KOG4589|consen 34 RQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATI 113 (232)
T ss_pred HhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCccc
Confidence 78899999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred EEc-cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 87 LEQ-DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 87 i~g-DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
+++ |+|++.+...|...+++. .+|+|+||++||..|....||+..+.||..+|..|..+|.|+|.||||++.+..-
T Consensus 114 i~~~dvtdp~~~~ki~e~lp~r---~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 114 IQGNDVTDPETYRKIFEALPNR---PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred ccccccCCHHHHHHHHHhCCCC---cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 999 999999999999988774 4599999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 166 SSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 166 ~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
+.+...|+.+|..|+.+||-+||.+|+|.|+||..|++.
T Consensus 191 ~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~ 229 (232)
T KOG4589|consen 191 ALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKGN 229 (232)
T ss_pred HHHHHHHHHHhhhcEeeCCccccccccceeeeeeeccCc
Confidence 999999999999999999999999999999999999874
No 7
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=100.00 E-value=2.3e-35 Score=304.94 Aligned_cols=194 Identities=32% Similarity=0.517 Sum_probs=178.5
Q ss_pred CCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceE
Q 003302 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVS 86 (832)
Q Consensus 7 k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~ 86 (832)
+++.|.||.+|+..+||+|++|||.+++.+|.++.++.+|||||||||+|++++++.+++.+.|+|||+++|.++++|.+
T Consensus 16 ~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~ 95 (209)
T PRK11188 16 EHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDF 95 (209)
T ss_pred HhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEE
Confidence 67789999999999999999999999999999999999999999999999999999987778999999999999999999
Q ss_pred EEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHH
Q 003302 87 LEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 87 i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~ 166 (832)
+++|++++.+.+.+...+.. +.||+|+||++|++.+.+..+...+..++..+|..+.++|+|||+|++++|++.++.
T Consensus 96 i~~D~~~~~~~~~i~~~~~~---~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~ 172 (209)
T PRK11188 96 LQGDFRDELVLKALLERVGD---SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFD 172 (209)
T ss_pred EecCCCChHHHHHHHHHhCC---CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHH
Confidence 99999998777666665544 667999999999988877777666666678899999999999999999999999999
Q ss_pred HHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccC
Q 003302 167 SVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 167 ~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~ 203 (832)
.+++.+..+|..++++||.+||..|+|+|+||.||++
T Consensus 173 ~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~ 209 (209)
T PRK11188 173 EYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209 (209)
T ss_pred HHHHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence 9999999999999999999999999999999999975
No 8
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=100.00 E-value=7.3e-34 Score=285.99 Aligned_cols=179 Identities=40% Similarity=0.669 Sum_probs=154.0
Q ss_pred chhHHHHHHHhhhhhcCCCCCC--CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHH
Q 003302 22 YRSRASWKLVQLDSKFSFLRSS--HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRAR 99 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g--~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~ 99 (832)
||+||+|||.+++++|+++.++ .+|||||||||||+++++++....+.|+|||+.++.+++++.++++|+++..+...
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~ 80 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKD 80 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHh
Confidence 8999999999999999988765 89999999999999999999755689999999999989999999999999877776
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccce
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKV 179 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V 179 (832)
+...+.. ..+.||+|+||++|+++|.+..+++.+..|+..+|..|..+|+|||+||+++|.......+++.+.++|..|
T Consensus 81 i~~~~~~-~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 81 IRKLLPE-SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKV 159 (181)
T ss_dssp GGGSHGT-TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHE
T ss_pred hhhhccc-cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEE
Confidence 6665542 125789999999999999999999999999999999999999999999999999887779999999999999
Q ss_pred EEecCCCCCCCCcceeEEEeec
Q 003302 180 EVDKPAASRSASAEIYLLGIKY 201 (832)
Q Consensus 180 ~~~KP~sSR~~SaEiyvVc~gf 201 (832)
.++||.+||..|+|+|+||.||
T Consensus 160 ~~~Kp~~sr~~s~E~Ylv~~~f 181 (181)
T PF01728_consen 160 KIVKPPSSRSESSEEYLVCRGF 181 (181)
T ss_dssp EEEE-TTSBTTCBEEEEESEEE
T ss_pred EEEECcCCCCCccEEEEEEcCC
Confidence 9999999999999999999998
No 9
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.95 E-value=4.6e-27 Score=238.37 Aligned_cols=188 Identities=41% Similarity=0.713 Sum_probs=167.2
Q ss_pred chHHHHHHhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEcc
Q 003302 11 DKYYRLAKEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQD 90 (832)
Q Consensus 11 D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gD 90 (832)
|.||+.|++.+||+|++|+|.++..+|..+++|.+|||+|||||+++..++..+...+.|+|||++++...+++.++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d 80 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGD 80 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEee
Confidence 68999999999999999999999999999999999999999999999999988766679999999997666789999999
Q ss_pred CCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHH
Q 003302 91 ITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLY 170 (832)
Q Consensus 91 It~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~ 170 (832)
+++......+...+.. +.||+|+++++|+..|.|..++.....+...+|..+.++|+|||+|++.+|...++..++.
T Consensus 81 ~~~~~~~~~l~~~~~~---~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~ 157 (188)
T TIGR00438 81 FTDEEVLNKIRERVGD---DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLN 157 (188)
T ss_pred CCChhHHHHHHHHhCC---CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHH
Confidence 9886655544444433 5689999999888778888887766666778899999999999999999999988899999
Q ss_pred HHHHcccceEEecCCCCCCCCcceeEEEeec
Q 003302 171 CLKQLFEKVEVDKPAASRSASAEIYLLGIKY 201 (832)
Q Consensus 171 ~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gf 201 (832)
.+...|..+.+.+|.+||..++|.|+||.+|
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 158 ELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred HHHhhhceEEEeCCCCCCcccceEEEEEecC
Confidence 9999999999999999999999999999987
No 10
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.65 E-value=3.1e-16 Score=174.43 Aligned_cols=197 Identities=19% Similarity=0.311 Sum_probs=150.6
Q ss_pred CCCCchHHHHHHhcCchhHHHHHHHhhhhhcCCC-C-C----CC-----------EEEEEcCCcCHHHHHHHHhCCCCCE
Q 003302 7 KHRLDKYYRLAKEHGYRSRASWKLVQLDSKFSFL-R-S----SH-----------AVLDLCAAPGGWMQVAVQRVPVGSL 69 (832)
Q Consensus 7 k~~~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl-~-~----g~-----------~VLDLGcGPGg~sq~La~~~p~~~~ 69 (832)
+.|...| ..-+..-|..|||.|+..++..|.++ . | |. ..-|+|||||||+.++.++-.-+++
T Consensus 216 RtRaNPy-EtIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w~AK 294 (845)
T KOG3673|consen 216 RTRANPY-ETIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFWNAK 294 (845)
T ss_pred hhcCChH-HHHHHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhhccc
Confidence 3343333 33455668899999999999988853 1 1 11 2568999999999999887666778
Q ss_pred EEEEeCCCCCCC---------C-CceE-----EEccCCChhHHHHHHHHHhhcc-CCcccEEEeCCCCCCCCCchhHHhH
Q 003302 70 VLGLDLVPIAPI---------R-GAVS-----LEQDITKPECRARVKKVMEEHG-VRAFDLVLHDGSPNVGGAWAQEAMS 133 (832)
Q Consensus 70 ViGVDLsp~~~i---------~-~V~~-----i~gDIt~~~~~~~l~~~L~~~~-~~~FDlVlsDgapnv~g~w~~D~~~ 133 (832)
-+|+.|.--... + -..+ -.|||+++.....+...+...- -..+++.++||.+.|-|.-+....-
T Consensus 295 GFGfTL~G~nDFKLekF~aaS~e~FetfYG~k~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEIL 374 (845)
T KOG3673|consen 295 GFGFTLAGKNDFKLEKFTAASQEFFETFYGTKDDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEIL 374 (845)
T ss_pred cceeEeccCCccchhhhhhcCHHhhhccccccCCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHHH
Confidence 888887642210 0 0111 2579999988888877664322 1457999999999988877777666
Q ss_pred HhHHHHHHHHHHHhhcccCcEEEEEEcCCCC--HHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCC
Q 003302 134 QNALVIDSVKLATQFLAPKGTFVTKVFRSQD--YSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAP 204 (832)
Q Consensus 134 q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d--~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p 204 (832)
+-.|.++.+-.|+.+|++||.|+||+|.-++ ...|+|+|..||+.|.++||.+||++++|+||||.|.+..
T Consensus 375 SKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr~~ 447 (845)
T KOG3673|consen 375 SKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLRKE 447 (845)
T ss_pred HHHHHHHHHHHHheeeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecchhhh
Confidence 6778888888999999999999999886554 3678999999999999999999999999999999998764
No 11
>KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.62 E-value=1.2e-15 Score=168.60 Aligned_cols=185 Identities=24% Similarity=0.315 Sum_probs=136.1
Q ss_pred CchhHHHHHHHhhhhhcCCCC-CCC--EEEEEcCCcCHHHHHHHHhCCC-------CCEEEEEeCCCCCC----------
Q 003302 21 GYRSRASWKLVQLDSKFSFLR-SSH--AVLDLCAAPGGWMQVAVQRVPV-------GSLVLGLDLVPIAP---------- 80 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~-~g~--~VLDLGcGPGg~sq~La~~~p~-------~~~ViGVDLsp~~~---------- 80 (832)
.+...||.||.+|...|.+.. ++. ..+.||-|||.|...+..++.. .-...+..|+|.-.
T Consensus 108 e~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r~k~~~~W~W~anTLNPY~E~n~~~~mi~D 187 (696)
T KOG3674|consen 108 ENVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSRGKNMSYWKWGANTLNPYFENNSCFDMIID 187 (696)
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHhccCCccceeeeccCccCcccccchHHHHhcc
Confidence 355689999999999999753 443 6899999999998776655421 11355667776320
Q ss_pred ---CC---CceEE----EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcc
Q 003302 81 ---IR---GAVSL----EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLA 150 (832)
Q Consensus 81 ---i~---~V~~i----~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~Lk 150 (832)
|. .-.++ .|||.+......|...+. ..+.||+|++||+.++.|...-....-..|..+-+-.|+.+|+
T Consensus 188 Dr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~--~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~ 265 (696)
T KOG3674|consen 188 DRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVK--LAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLLR 265 (696)
T ss_pred chhhhccccceeeCCCCCccHHHHHHHHHHHHHHH--hhceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11222 577777665555555433 2488999999999998876433322223455566678999999
Q ss_pred cCcEEEEEEcCCCC--HHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCCC
Q 003302 151 PKGTFVTKVFRSQD--YSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKI 207 (832)
Q Consensus 151 pGG~fV~KVFrs~d--~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~i 207 (832)
.||.||+|+|+-+. ...+|++|+..|..|+++||.+|+++++|+||||.||++..-+
T Consensus 266 ~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK~~~~l 324 (696)
T KOG3674|consen 266 RGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYKDHPDL 324 (696)
T ss_pred cCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhccccccCCCCCceEEEEecccCCCccc
Confidence 99999999997653 5789999999999999999999999999999999999876543
No 12
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=153.58 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=136.3
Q ss_pred cCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHH
Q 003302 37 FSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 37 f~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
|..+....+|||||||.|..+..++++.+. +.|+||++++.. ++ .++.++++|+....
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~--------- 108 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL--------- 108 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh---------
Confidence 333455789999999999999999999874 899999999621 22 35889999998743
Q ss_pred hhccCCcccEEEeCCCCCCCCCc-hhHHh------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHccc
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAW-AQEAM------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFE 177 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w-~~D~~------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~ 177 (832)
......+||+|+|||+.+-.+.. +.+.. .........++.|..+|+|||+|.+ |+|+....+++..|.++--
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-V~r~erl~ei~~~l~~~~~ 187 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-VHRPERLAEIIELLKSYNL 187 (248)
T ss_pred hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-EecHHHHHHHHHHHHhcCC
Confidence 12223568999999976644433 22111 1113357889999999999999999 9999999999999999766
Q ss_pred ceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccchhhhcccC
Q 003302 178 KVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGS 221 (832)
Q Consensus 178 ~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~~vf~~~ 221 (832)
.+..+.++++|...+...|+.++-+++.. ++.+++|++|+.+-
T Consensus 188 ~~k~i~~V~p~~~k~A~~vLv~~~k~~~~-~l~~~ppLii~~e~ 230 (248)
T COG4123 188 EPKRIQFVYPKIGKAANRVLVEAIKGGKS-GLKVLPPLIIHDED 230 (248)
T ss_pred CceEEEEecCCCCCcceEEEEEEecCCCC-CceecCCEEEECCC
Confidence 67777799999999999999999999874 78999999999875
No 13
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.31 E-value=1.8e-12 Score=136.72 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=73.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|.+|||||||||.++..++...++.+.|+|+|+++ |. ...+|.++++|+++++.. +
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~--------d-- 114 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP--------D-- 114 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S---------T--
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC--------C--
Confidence 36789999999999999999999888788999999997 32 245899999999987532 2
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccce
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKV 179 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V 179 (832)
++||+|++-.. .++... ...+|++++++|+|||+|++.-|..+....+...+..||..|
T Consensus 115 -~sfD~v~~~fg-----lrn~~d------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~i 173 (233)
T PF01209_consen 115 -NSFDAVTCSFG-----LRNFPD------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYI 173 (233)
T ss_dssp -T-EEEEEEES------GGG-SS------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----
T ss_pred -CceeEEEHHhh-----HHhhCC------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccc
Confidence 78899998642 222211 246889999999999999987776555344445555555543
No 14
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=6.7e-11 Score=127.95 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=93.2
Q ss_pred chhHHHH--HHH-hhhhhcC--CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-----CC----CCCCceEE
Q 003302 22 YRSRASW--KLV-QLDSKFS--FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-----IA----PIRGAVSL 87 (832)
Q Consensus 22 yrsRaaf--KLi-qi~~kf~--fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-----~~----~i~~V~~i 87 (832)
||.+..| ||. -|..-.. .+.++.+|||||||||.|+++++..++..+.|+|||+++ +. ..+||.++
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I 186 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPI 186 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEE
Confidence 7766655 454 2222222 268999999999999999999999998778999999996 21 23689999
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC-----C
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR-----S 162 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr-----s 162 (832)
++|++.+.... .+ ...||+|++|.+. +++. ..++..|.++|+|||+|++++-. .
T Consensus 187 ~~Da~~p~~y~----~~----~~~vDvV~~Dva~-------pdq~------~il~~na~r~LKpGG~~vI~ika~~id~g 245 (293)
T PTZ00146 187 IEDARYPQKYR----ML----VPMVDVIFADVAQ-------PDQA------RIVALNAQYFLKNGGHFIISIKANCIDST 245 (293)
T ss_pred ECCccChhhhh----cc----cCCCCEEEEeCCC-------cchH------HHHHHHHHHhccCCCEEEEEEeccccccC
Confidence 99998643211 11 1467999999741 2221 12334688999999999995431 1
Q ss_pred CCHHHH----HHHHHHc-ccceEEec
Q 003302 163 QDYSSV----LYCLKQL-FEKVEVDK 183 (832)
Q Consensus 163 ~d~~~l----l~~L~~~-F~~V~~~K 183 (832)
.....+ +..|... |..++.+.
T Consensus 246 ~~pe~~f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 246 AKPEVVFASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred CCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 122222 3445554 87666553
No 15
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=2.2e-11 Score=139.44 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=91.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|.+|||+|||||+++.+++..++..+.|+|+|+++- ..+.+|.++++|++..... +. ..
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~------~~-~~ 322 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL------KP-QW 322 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc------cc-cc
Confidence 357899999999999999999999877789999999972 1345688899998764210 00 01
Q ss_pred CCcccEEEeCCCCCCCCCch--hH--------H-hHHhHHHHHHHHHHHhhcccCcEEEEE---EcCCCCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWA--QE--------A-MSQNALVIDSVKLATQFLAPKGTFVTK---VFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~--~D--------~-~~q~~L~~~aLk~A~~~LkpGG~fV~K---VFrs~d~~~ll~~L~~ 174 (832)
.+.||+|++|+++...|.+. ++ . .....++..+|..|.++|+|||+||+. +++..+...+.+.+..
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 15689999998765434322 11 1 112245678899999999999999954 4444555566677776
Q ss_pred c
Q 003302 175 L 175 (832)
Q Consensus 175 ~ 175 (832)
+
T Consensus 403 ~ 403 (434)
T PRK14901 403 H 403 (434)
T ss_pred C
Confidence 4
No 16
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=3e-11 Score=138.69 Aligned_cols=132 Identities=21% Similarity=0.291 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||+|||||+++.+++..++..+.|+|||+++.. .+.+|.++++|++.... .+.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~------~~~---- 318 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE------KFA---- 318 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc------hhc----
Confidence 578899999999999999999988667899999999631 34568899999876420 111
Q ss_pred CcccEEEeCCCCCCCCCchh-----------HHhHHhHHHHHHHHHHHhhcccCcEEEE---EEcCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQ-----------EAMSQNALVIDSVKLATQFLAPKGTFVT---KVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~-----------D~~~q~~L~~~aLk~A~~~LkpGG~fV~---KVFrs~d~~~ll~~L~~~ 175 (832)
+.||+|++|+++...|.+.. +......++..+|..|.++|+|||+||+ +++...+...+.+.+..+
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 398 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEH 398 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence 56899999987543343211 1112234567789999999999999995 445555555556667663
Q ss_pred --ccceEEe
Q 003302 176 --FEKVEVD 182 (832)
Q Consensus 176 --F~~V~~~ 182 (832)
|..+.+.
T Consensus 399 ~~~~~~~~~ 407 (444)
T PRK14902 399 PEFELVPLQ 407 (444)
T ss_pred CCcEEeccc
Confidence 5444443
No 17
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=1.6e-11 Score=129.47 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+|.+|||+|||||-++..+++..+ .+.|+|+|+++ |. ...+|.++++|+..++ +++
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--------f~D--- 117 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--------FPD--- 117 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--------CCC---
Confidence 3799999999999999999999998 88999999997 42 1234889999999876 233
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
.+||+|++.- |..+... ...+|+++.++|+|||.|+|.-|..+....+...+..|
T Consensus 118 ~sFD~vt~~f-----glrnv~d------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~ 172 (238)
T COG2226 118 NSFDAVTISF-----GLRNVTD------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY 172 (238)
T ss_pred CccCEEEeee-----hhhcCCC------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence 7889999863 2222221 35789999999999999999877766544444444433
No 18
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.21 E-value=4.8e-11 Score=128.11 Aligned_cols=125 Identities=20% Similarity=0.217 Sum_probs=87.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|.+|||||||||+++.+++..++..+.|+|+|+++-. .+.+|.++++|++.... .
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-------~---- 137 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA-------A---- 137 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-------h----
Confidence 3678999999999999999999998777899999999721 24567888888765321 0
Q ss_pred CCcccEEEeCCCCCCCCCchhH----------HhH-HhHHHHHHHHHHHhhcccCcEEEEEEcC--C-CCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQE----------AMS-QNALVIDSVKLATQFLAPKGTFVTKVFR--S-QDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D----------~~~-q~~L~~~aLk~A~~~LkpGG~fV~KVFr--s-~d~~~ll~~L~~ 174 (832)
.+.||+|++|+++...|.|..+ ... ...++..+|..|..+|+|||+||..+.. . .+-..+.++++.
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 1458999999887655544222 111 1245667899999999999999976432 2 222334455554
Q ss_pred c
Q 003302 175 L 175 (832)
Q Consensus 175 ~ 175 (832)
+
T Consensus 218 ~ 218 (264)
T TIGR00446 218 R 218 (264)
T ss_pred C
Confidence 3
No 19
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.19 E-value=9e-11 Score=117.78 Aligned_cols=119 Identities=26% Similarity=0.377 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||||||+|.++.+++...+ ...|+++|+++.. .+.++.++++|+.... . ..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~---~~ 97 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------P---DG 97 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------C---TT
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------c---cc
Confidence 567999999999999999999876 5689999999732 3445888999987632 1 26
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEe
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~ 182 (832)
.||+|+||++...++. ....+....+..|.++|+|||+|++-+-+...+..+ +..+|..+.++
T Consensus 98 ~fD~Iv~NPP~~~~~~------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~~ 160 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGGD------DGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEVV 160 (170)
T ss_dssp CEEEEEE---SBTTSH------CHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EEE
T ss_pred ceeEEEEccchhcccc------cchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEEE
Confidence 8899999986433321 112344667888999999999998844444555544 78889888876
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.15 E-value=9.5e-11 Score=107.89 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----------CCCCceEEEccC-CChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----------PIRGAVSLEQDI-TKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----------~i~~V~~i~gDI-t~~~~~~~l~~~L~~~~ 108 (832)
|+.+|||||||+|.++..+++..+ ++.|+|||+++. . ..+++.++++|+ .... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------------~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD------------F 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT------------T
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc------------c
Confidence 578999999999999999999544 679999999972 1 236899999999 2211 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
...||+|++.+ .. ..+.... .-...++..+.+.|+|||+|++..
T Consensus 68 ~~~~D~v~~~~-~~--~~~~~~~----~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 LEPFDLVICSG-FT--LHFLLPL----DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SSCEEEEEECS-GS--GGGCCHH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEEEECC-Cc--cccccch----hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 25789999986 11 1111111 223567888999999999999853
No 21
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=2.2e-10 Score=131.14 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=88.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|.+|||+|||||+.+.+++..++..+.|+|+|+++-. .+.++.++++|.+.+.. .+.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~------~~~--- 305 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE------YVQ--- 305 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh------hhh---
Confidence 3678999999999999999999998777899999999721 34467888999876421 111
Q ss_pred CCcccEEEeCCCCCCCCCchh--H--------Hh-HHhHHHHHHHHHHHhhcccCcEEEEEEcC---CCCHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQ--E--------AM-SQNALVIDSVKLATQFLAPKGTFVTKVFR---SQDYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~--D--------~~-~q~~L~~~aLk~A~~~LkpGG~fV~KVFr---s~d~~~ll~~L~~ 174 (832)
+.||+|++|+++...|.+.. + .. ....++..+|..+.++|+|||++|+.+.. ..+...+.+.|..
T Consensus 306 -~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 306 -DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred -ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 56899999998765554321 1 11 12246678899999999999999975543 2333444455544
No 22
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=99.14 E-value=1.9e-10 Score=126.08 Aligned_cols=125 Identities=27% Similarity=0.300 Sum_probs=89.0
Q ss_pred hcCchhHHHHHHHhhhhhcC-------CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCC----CCCceEE
Q 003302 19 EHGYRSRASWKLVQLDSKFS-------FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP----IRGAVSL 87 (832)
Q Consensus 19 e~gyrsRaafKLiqi~~kf~-------fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~----i~~V~~i 87 (832)
..+.+|||+|||.++...|. ++.+|++||||||+||||+++|+++ +..|+|||..+|.+ .++|+++
T Consensus 181 p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~~~L~~~~~V~h~ 257 (357)
T PRK11760 181 PADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMAQSLMDTGQVEHL 257 (357)
T ss_pred CCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcCHhhhCCCCEEEE
Confidence 34678999999999965554 5689999999999999999999987 56999999999864 4679999
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC--cEE--EEEEcCCC
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK--GTF--VTKVFRSQ 163 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG--G~f--V~KVFrs~ 163 (832)
.+|...... . .+.||+|+||+.. .+ ..++.++..+|..| ..+ .+|.-...
T Consensus 258 ~~d~fr~~p---------~--~~~vDwvVcDmve------~P---------~rva~lm~~Wl~~g~cr~aIfnLKlpmk~ 311 (357)
T PRK11760 258 RADGFKFRP---------P--RKNVDWLVCDMVE------KP---------ARVAELMAQWLVNGWCREAIFNLKLPMKK 311 (357)
T ss_pred eccCcccCC---------C--CCCCCEEEEeccc------CH---------HHHHHHHHHHHhcCcccEEEEEEEcCCCC
Confidence 888765321 0 2667999999751 12 13344566677655 233 34554445
Q ss_pred CHHHHHHHH
Q 003302 164 DYSSVLYCL 172 (832)
Q Consensus 164 d~~~ll~~L 172 (832)
+|..+...+
T Consensus 312 r~~~v~~~l 320 (357)
T PRK11760 312 RYEEVRQCL 320 (357)
T ss_pred CHHHHHHHH
Confidence 676654433
No 23
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=4.3e-10 Score=128.69 Aligned_cols=126 Identities=22% Similarity=0.299 Sum_probs=88.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------C--C--CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------P--I--RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~--i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+|.+|||||||||+++.+++..++. +.|+|+|+++.. . . .++.++++|++.+.. .+. .
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~------~~~---~ 311 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ------WWD---G 311 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh------hcc---c
Confidence 357899999999999999999998863 799999999731 0 1 136788999886421 111 1
Q ss_pred CcccEEEeCCCCCCCCCc--------hhH---HhHHhHHHHHHHHHHHhhcccCcEEEEE---EcCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAW--------AQE---AMSQNALVIDSVKLATQFLAPKGTFVTK---VFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w--------~~D---~~~q~~L~~~aLk~A~~~LkpGG~fV~K---VFrs~d~~~ll~~L~~~ 175 (832)
++||+|++|+++...|.+ ... ......++..+|..|..+|+|||+||+. +++..+...+.+.+..+
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~ 391 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH 391 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 568999999976654432 111 1112345678899999999999999964 45666666666666653
No 24
>PRK04266 fibrillarin; Provisional
Probab=99.10 E-value=4.5e-10 Score=118.16 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+|.+|||+|||||+|+.+++..++ .+.|+|+|+++. ...++|.++.+|++.+.... .+. .
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~----~l~----~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA----HVV----E 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh----hcc----c
Confidence 57899999999999999999999987 679999999972 12468999999998642111 111 4
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC------CC---CHHHHHHHHHHc-ccceE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR------SQ---DYSSVLYCLKQL-FEKVE 180 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr------s~---d~~~ll~~L~~~-F~~V~ 180 (832)
.||+|+|+++. .| . ...+|..+.++|+|||+|++.+.- .. .+...+..+... |..+.
T Consensus 141 ~~D~i~~d~~~----p~---~------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 141 KVDVIYQDVAQ----PN---Q------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred cCCEEEECCCC----hh---H------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57999998641 11 1 123567889999999999985431 11 122344555543 76666
Q ss_pred Ee
Q 003302 181 VD 182 (832)
Q Consensus 181 ~~ 182 (832)
..
T Consensus 208 ~~ 209 (226)
T PRK04266 208 VV 209 (226)
T ss_pred EE
Confidence 54
No 25
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=4.1e-10 Score=129.52 Aligned_cols=123 Identities=23% Similarity=0.278 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+|.+|||+|||||+++.+++..++..+.|+|+|+++-. .+.+|.++++|+++.. ..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~---------~~--- 316 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS---------PE--- 316 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc---------cC---
Confidence 578999999999999999999988767899999999721 2456888899987632 11
Q ss_pred CcccEEEeCCCCCCCCCch--------h--HHhH-HhHHHHHHHHHHHhhcccCcEEEEEEcCC---CCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWA--------Q--EAMS-QNALVIDSVKLATQFLAPKGTFVTKVFRS---QDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~--------~--D~~~-q~~L~~~aLk~A~~~LkpGG~fV~KVFrs---~d~~~ll~~L~~~ 175 (832)
..||+|++|+++...|.|. . .... ...++..+|..+.++|+|||+||+.+..- .+-..+.+.|..+
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 5689999998765545432 1 1111 12345678999999999999999865433 2333344666654
No 26
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.09 E-value=4.2e-10 Score=129.73 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++|.+|||+||||||.|.+++..++..+.|+++|+++-. .+.+|.+.+.|.+.+. ..+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~------~~~~---- 181 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG------AALP---- 181 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh------hhch----
Confidence 689999999999999999999999878899999999631 3567777788876532 1121
Q ss_pred CcccEEEeCCCCCCCCCchhHH----------h-HHhHHHHHHHHHHHhhcccCcEEEEEEc--CC-CCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEA----------M-SQNALVIDSVKLATQFLAPKGTFVTKVF--RS-QDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~----------~-~q~~L~~~aLk~A~~~LkpGG~fV~KVF--rs-~d~~~ll~~L~~~ 175 (832)
+.||.|+.|+++...|.+..++ . ....++..+|..|..+|+|||++|.++. .+ ++-..+.|++..+
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 5689999999877655543221 1 2235678889999999999999987443 22 2333455777765
No 27
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.09 E-value=7.9e-10 Score=126.48 Aligned_cols=126 Identities=21% Similarity=0.288 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.+|.+|||+|||||+++.+++..++ ++.|+|+|+++.. .+. .+++..+|...+... ..
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~------~~-- 306 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW------AE-- 306 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc------cc--
Confidence 35789999999999999999999987 7899999999721 122 123356666543210 11
Q ss_pred cCCcccEEEeCCCCCCCCCchh-----------HHhHHhHHHHHHHHHHHhhcccCcEEEEEEc---CCCCHHHHHHHHH
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQ-----------EAMSQNALVIDSVKLATQFLAPKGTFVTKVF---RSQDYSSVLYCLK 173 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~-----------D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF---rs~d~~~ll~~L~ 173 (832)
.+.||+|++|+++...|.+.. +......++..+|..|.++|+|||+||+.+. ...+...+.+.+.
T Consensus 307 -~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 307 -NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred -ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 156899999988766554211 1122335677889999999999999997543 3345555556666
Q ss_pred Hc
Q 003302 174 QL 175 (832)
Q Consensus 174 ~~ 175 (832)
++
T Consensus 386 ~~ 387 (426)
T TIGR00563 386 EH 387 (426)
T ss_pred hC
Confidence 53
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.08 E-value=3.3e-10 Score=118.17 Aligned_cols=108 Identities=14% Similarity=0.224 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.|+..++...++.+.|+|||+++. . .++++.++++|+.+.. +.
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~--- 111 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--------FD--- 111 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--------CC---
Confidence 467899999999999999999998876789999999962 1 2457889999987642 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVL 169 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll 169 (832)
.+.||+|+++... .|..+ ...+|..+.++|+|||+|++..+.......+.
T Consensus 112 ~~~fD~V~~~~~l----~~~~~-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 161 (231)
T TIGR02752 112 DNSFDYVTIGFGL----RNVPD-------YMQVLREMYRVVKPGGKVVCLETSQPTIPGFK 161 (231)
T ss_pred CCCccEEEEeccc----ccCCC-------HHHHHHHHHHHcCcCeEEEEEECCCCCChHHH
Confidence 1678999987532 12222 13467788999999999998555444444333
No 29
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.06 E-value=1.6e-09 Score=121.72 Aligned_cols=133 Identities=18% Similarity=0.176 Sum_probs=93.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------C---CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------P---IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|||||||+|.++..++...| ...|+|||++++. . ..++.++.+|+.+. +.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~---------~~--- 295 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG---------VE--- 295 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc---------CC---
Confidence 45899999999999999999876 6799999999742 1 12567788887542 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASR 188 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR 188 (832)
...||+|+||+++..+..+. + ......+..+.++|+|||.|++..-+.-.|. ..|.++|..++++
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~-~-----~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~---~~L~~~fg~~~~v------ 360 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALT-D-----NVAWEMFHHARRCLKINGELYIVANRHLDYF---HKLKKIFGNCTTI------ 360 (378)
T ss_pred CCCEEEEEECcCcccCccCC-H-----HHHHHHHHHHHHhcccCCEEEEEEecCcCHH---HHHHHHcCCceEE------
Confidence 14789999998765433221 1 1234677889999999999999654544554 4566678777664
Q ss_pred CCCcceeEEEeeccCC
Q 003302 189 SASAEIYLLGIKYKAP 204 (832)
Q Consensus 189 ~~SaEiyvVc~gfk~p 204 (832)
.+...|+|.+..+..
T Consensus 361 -a~~~kf~vl~a~k~~ 375 (378)
T PRK15001 361 -ATNNKFVVLKAVKLG 375 (378)
T ss_pred -ccCCCEEEEEEEeCC
Confidence 444578888876643
No 30
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=8.1e-10 Score=123.54 Aligned_cols=128 Identities=23% Similarity=0.343 Sum_probs=92.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++|.+|||+||||||-|.++++.|+. +..|+++|+++-. .+.++..++.|....... ...
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~------~~~- 226 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL------LPG- 226 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc------ccc-
Confidence 368999999999999999999999986 4556999999721 355677778776643211 111
Q ss_pred cCCcccEEEeCCCCCCCCCchh-----------HHhHHhHHHHHHHHHHHhhcccCcEEEEE---EcCCCCHHHHHHHHH
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQ-----------EAMSQNALVIDSVKLATQFLAPKGTFVTK---VFRSQDYSSVLYCLK 173 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~-----------D~~~q~~L~~~aLk~A~~~LkpGG~fV~K---VFrs~d~~~ll~~L~ 173 (832)
...||.|+.|+++...|.+.. +......++..+|..|..+|+|||.+|.+ ++...+-..+.+.+.
T Consensus 227 -~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~ 305 (355)
T COG0144 227 -GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLE 305 (355)
T ss_pred -cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHH
Confidence 025899999998877665422 22233466788999999999999999964 344556566668887
Q ss_pred Hc
Q 003302 174 QL 175 (832)
Q Consensus 174 ~~ 175 (832)
.+
T Consensus 306 ~~ 307 (355)
T COG0144 306 RH 307 (355)
T ss_pred hC
Confidence 75
No 31
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.04 E-value=4.1e-10 Score=120.74 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-------C------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-------P------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-------~------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
+.++.+|||||||||.++..++..+++.+.|+|||+++ |. + .+++.++++|+.+.+ +.
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp--------~~ 142 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP--------FD 142 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC--------CC
Confidence 46788999999999999999998876677999999997 31 1 236889999998754 22
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
. ++||+|++.... ++..+ ...+|..+.++|+|||+|++..|....
T Consensus 143 ~---~sfD~V~~~~~l----~~~~d-------~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 143 D---CYFDAITMGYGL----RNVVD-------RLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred C---CCEeEEEEeccc----ccCCC-------HHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 2 678999986532 22222 245788999999999999997776544
No 32
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.01 E-value=2.4e-09 Score=108.88 Aligned_cols=103 Identities=11% Similarity=0.045 Sum_probs=75.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+|||+|||+|.++..++...+ .+.|+|||+++. ..+.++.++++|+.+.. . .+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---------~---~~~ 109 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---------H---EEQ 109 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---------c---cCC
Confidence 78999999999999998886654 679999999972 13457899999987631 1 167
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
||+|++++. .. ....+..+.++|+|||.|++ .+++.....+.....+
T Consensus 110 fD~I~s~~~------~~---------~~~~~~~~~~~LkpgG~lvi-~~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 110 FDVITSRAL------AS---------LNVLLELTLNLLKVGGYFLA-YKGKKYLDEIEEAKRK 156 (181)
T ss_pred ccEEEehhh------hC---------HHHHHHHHHHhcCCCCEEEE-EcCCCcHHHHHHHHHh
Confidence 899999741 01 12345567899999999998 4566666666666555
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.01 E-value=7.1e-10 Score=108.67 Aligned_cols=100 Identities=17% Similarity=0.303 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+.+|||||||+|.++..++....+++.|+|||+++- ..++++.++++|++++... + .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~------~---~- 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE------L---E- 71 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC------S---S-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc------c---C-
Confidence 45789999999999999999966555889999999972 1456899999999984310 0 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
..||+|+++++. .|..+ ...+++.+.++|++||.|++..+.
T Consensus 72 ~~~D~I~~~~~l----~~~~~-------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVL----HHFPD-------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTG----GGTSH-------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCch----hhccC-------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 578999999753 22222 235677899999999999986665
No 34
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.00 E-value=4.9e-10 Score=114.97 Aligned_cols=119 Identities=21% Similarity=0.321 Sum_probs=92.2
Q ss_pred HhcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-----CCCCceEEEccC
Q 003302 18 KEHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-----PIRGAVSLEQDI 91 (832)
Q Consensus 18 ke~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-----~i~~V~~i~gDI 91 (832)
+..+-|+|-+..|+-.. . +.+..+|+|||||||.-+..|+++.| .+.|+|||-|+ |. .+|+++|..+||
T Consensus 10 ~F~~eRtRPa~dLla~V---p-~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl 84 (257)
T COG4106 10 QFEDERTRPARDLLARV---P-LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPDATFEEADL 84 (257)
T ss_pred HHHHhccCcHHHHHhhC---C-ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCCCceecccH
Confidence 44567888888877421 1 24567899999999999999999998 68999999998 43 579999999999
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
.+.. +...+|+|++|.+ ..|..||.. .|......|.|||++.+.+-...+
T Consensus 85 ~~w~------------p~~~~dllfaNAv----lqWlpdH~~-------ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 85 RTWK------------PEQPTDLLFANAV----LQWLPDHPE-------LLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhcC------------CCCccchhhhhhh----hhhccccHH-------HHHHHHHhhCCCceEEEECCCccC
Confidence 8753 1256799999875 468888865 334456789999999997765543
No 35
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.99 E-value=1.3e-09 Score=116.05 Aligned_cols=113 Identities=23% Similarity=0.331 Sum_probs=81.5
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---CCCCceEEEccCCChhH
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---PIRGAVSLEQDITKPEC 96 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---~i~~V~~i~gDIt~~~~ 96 (832)
..|.+..+.|+.. +. +.++.+|||||||+|.++..++...| ++.|+|||+++ |. ...++.++++|+.+..
T Consensus 12 ~~~~~~~~~ll~~---l~-~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~- 85 (255)
T PRK14103 12 DHRGRPFYDLLAR---VG-AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGDVRDWK- 85 (255)
T ss_pred hHhhCHHHHHHHh---CC-CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-
Confidence 3444555555543 22 35678999999999999999999875 67999999998 32 2346888999986531
Q ss_pred HHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 97 RARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 97 ~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
. .+.||+|+|+... +|..+. ..++..+.++|+|||+|++.++.
T Consensus 86 --------~---~~~fD~v~~~~~l----~~~~d~-------~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 86 --------P---KPDTDVVVSNAAL----QWVPEH-------ADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred --------C---CCCceEEEEehhh----hhCCCH-------HHHHHHHHHhCCCCcEEEEEcCC
Confidence 1 1678999998642 343332 35677889999999999986654
No 36
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.98 E-value=7.4e-09 Score=110.77 Aligned_cols=140 Identities=22% Similarity=0.238 Sum_probs=94.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||+|||+|.++..++..++ .+.|+|+|+++.. ...++.++++|+.... . .
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~---~ 173 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------P---G 173 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------C---C
Confidence 4567899999999999999999875 5799999999721 1346889999986531 1 1
Q ss_pred CcccEEEeCCCCCCCCCch---h-----HH-------hHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 110 RAFDLVLHDGSPNVGGAWA---Q-----EA-------MSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~---~-----D~-------~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
+.||+|++|++....+.+. . ++ .........++..+.++|+|||+|++.+ .......+...|..
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~~~~~~~l~~ 252 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GYDQGEAVRALLAA 252 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-CchHHHHHHHHHHh
Confidence 5789999997533222111 0 00 0122345677888999999999999854 22223445555554
Q ss_pred -cccceEEecCCCCCCCCcceeEEE
Q 003302 175 -LFEKVEVDKPAASRSASAEIYLLG 198 (832)
Q Consensus 175 -~F~~V~~~KP~sSR~~SaEiyvVc 198 (832)
.|..|.+.++.+.+ ++++++
T Consensus 253 ~gf~~v~~~~d~~~~----~r~~~~ 273 (275)
T PRK09328 253 AGFADVETRKDLAGR----DRVVLG 273 (275)
T ss_pred CCCceeEEecCCCCC----ceEEEE
Confidence 37788888777655 356654
No 37
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.98 E-value=3.7e-09 Score=111.21 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=90.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+|||+|||+|.++..++...+ ...|+|+|+++.. .+.++.++++|+.+. +. .+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---------~~---~~ 153 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---------LP---GG 153 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---------Cc---CC
Confidence 345899999999999999998876 5699999999621 244688899998652 11 16
Q ss_pred cccEEEeCCCCCCCCCch---hHHh------------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH-
Q 003302 111 AFDLVLHDGSPNVGGAWA---QEAM------------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ- 174 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~---~D~~------------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~- 174 (832)
.||+|++|++....+.+. .+.. .........+..+.++|+|||+|++.+ .......+...|.+
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~~~~~~~~~l~~~ 232 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYDQGEAVRALFEAA 232 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-CccHHHHHHHHHHhC
Confidence 789999998643222110 0000 011223567888999999999999854 22334556666665
Q ss_pred cccceEEecCCCCC
Q 003302 175 LFEKVEVDKPAASR 188 (832)
Q Consensus 175 ~F~~V~~~KP~sSR 188 (832)
-|..|.+.+...++
T Consensus 233 gf~~v~~~~d~~~~ 246 (251)
T TIGR03534 233 GFADVETRKDLAGK 246 (251)
T ss_pred CCCceEEEeCCCCC
Confidence 38888888776655
No 38
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=2.1e-09 Score=115.79 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=80.4
Q ss_pred HHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHH
Q 003302 30 LVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECR 97 (832)
Q Consensus 30 Liqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~ 97 (832)
+-.+.++++ |+||++|||+|||.|+.+.++++.. +..|+||++|+.+ .++ +|+++..|..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--
Confidence 333444444 6899999999999999999999997 4699999999732 244 6888888888743
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
+.||.|+|-|++..-|..+.+ .-+..+..+|+|||.+++-.+.
T Consensus 136 ------------e~fDrIvSvgmfEhvg~~~~~---------~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 136 ------------EPFDRIVSVGMFEHVGKENYD---------DFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred ------------cccceeeehhhHHHhCcccHH---------HHHHHHHhhcCCCceEEEEEec
Confidence 558999999976654443332 3456789999999999985443
No 39
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.95 E-value=4.8e-09 Score=107.73 Aligned_cols=125 Identities=15% Similarity=0.218 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------C-CCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------P-IRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||||||+|.++..++..++..++|+|||+++- . . ..++.++.+|+.+.. ..+
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l------~~~--- 108 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL------FTI--- 108 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH------hhc---
Confidence 467899999999999999999888766789999999962 1 2 246788888875421 111
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEecCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVDKPAA 186 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~KP~s 186 (832)
...||+|++++.. . .+..++..+.++|+|||+||+.+.+......++..|..+ | .++++....
T Consensus 109 -~~~~D~V~~~~~~----~----------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~ 172 (198)
T PRK00377 109 -NEKFDRIFIGGGS----E----------KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITEVII 172 (198)
T ss_pred -CCCCCEEEECCCc----c----------cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEEEeh
Confidence 1568999996521 0 023467788999999999998555555556667777654 5 677666656
Q ss_pred CCC
Q 003302 187 SRS 189 (832)
Q Consensus 187 SR~ 189 (832)
+|.
T Consensus 173 ~~~ 175 (198)
T PRK00377 173 AKG 175 (198)
T ss_pred hhc
Confidence 554
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.95 E-value=5.1e-09 Score=97.53 Aligned_cols=96 Identities=24% Similarity=0.267 Sum_probs=71.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++..+|. +.|+|+|+++.. .++++.++.+|+..... ..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~---- 85 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE------DS---- 85 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh------hh----
Confidence 456789999999999999999998874 799999999621 24568888888764210 01
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
...||+|++.+.+. ....++..+.++|+|||+|++.+.
T Consensus 86 ~~~~D~v~~~~~~~--------------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSGG--------------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcch--------------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 14689999976321 123567889999999999998653
No 41
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.94 E-value=5.8e-09 Score=110.51 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
++.+|||||||+|.++..++.. +..|+|+|+++ +. ..+.+.++++|+.+.+ +. .+.||+|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~--------~~---~~~fD~V 107 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLP--------LA---TATFDLA 107 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc--------CC---CCcEEEE
Confidence 4678999999999999988764 46999999997 21 2334567889987643 11 1578999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHH
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLK 173 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~ 173 (832)
+++.+. .|..+. ..+|..+.++|+|||.|++..|....+..+...+.
T Consensus 108 ~s~~~l----~~~~d~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~ 154 (251)
T PRK10258 108 WSNLAV----QWCGNL-------STALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ 154 (251)
T ss_pred EECchh----hhcCCH-------HHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence 998642 243332 35678899999999999998887777666554443
No 42
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.94 E-value=5.7e-09 Score=106.85 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 38 SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 38 ~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
.+++++.+|||+|||+|.++..++...+ ++.|+|||+++. ..+.++.++++|+.+.. .
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~----------~ 109 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG----------Q 109 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC----------C
Confidence 4566789999999999999999988665 679999999972 13456889999987632 1
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.++||+|+++... . ....+..+.++|+|||+|++-.+.
T Consensus 110 --~~~fDlV~~~~~~------~---------~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 110 --EEKFDVVTSRAVA------S---------LSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred --CCCccEEEEcccc------C---------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 1578999997421 0 134567789999999999985544
No 43
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.93 E-value=4.1e-09 Score=111.99 Aligned_cols=97 Identities=25% Similarity=0.439 Sum_probs=74.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.++.+|||||||+|.++..++...| ++.|+|||+++. . .++++.++++|+.+.. . ...||
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~---------~---~~~fD 95 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ---------P---PQALD 95 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC---------C---CCCcc
Confidence 35678999999999999999998875 579999999972 1 3567889999987531 1 15789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+|+++.+. +|..+. ..+|..+.++|+|||+|++.+.
T Consensus 96 ~v~~~~~l----~~~~d~-------~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 96 LIFANASL----QWLPDH-------LELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEEEccCh----hhCCCH-------HHHHHHHHHhcCCCcEEEEECC
Confidence 99998653 344332 3567888999999999998653
No 44
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.93 E-value=4.6e-09 Score=116.63 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=98.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++|.+|||+||+|||-+.++|..|...+.|+|.|.+... .+.|.++...|....+. ..+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~-----~~~~---- 310 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE-----KEFP---- 310 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-----cccC----
Confidence 689999999999999999999999999999999987521 24556666777664321 1121
Q ss_pred CcccEEEeCCCCCCCCCchh-----------HHhHHhHHHHHHHHHHHhhcccCcEEEEE---EcCCCCHHHHHHHHHHc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQ-----------EAMSQNALVIDSVKLATQFLAPKGTFVTK---VFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~-----------D~~~q~~L~~~aLk~A~~~LkpGG~fV~K---VFrs~d~~~ll~~L~~~ 175 (832)
++||.||.|+++...|.-+. +-....+|+...|-.|..++++||++|.+ |....+-..+-|+|..+
T Consensus 311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 47899999987654333221 22233477788888999999999999964 44555656667888874
Q ss_pred ccceEEecCCCCCCCC
Q 003302 176 FEKVEVDKPAASRSAS 191 (832)
Q Consensus 176 F~~V~~~KP~sSR~~S 191 (832)
-.+++. |..++.+.
T Consensus 391 -p~~kL~-p~~~~iG~ 404 (460)
T KOG1122|consen 391 -PEVKLV-PTGLDIGG 404 (460)
T ss_pred -CceEec-cccccCCC
Confidence 344443 66666544
No 45
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.92 E-value=1.2e-08 Score=113.69 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=90.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
..+|||||||+|.++..++...| ...|+|||+++.. .+ .+.++.+|+... + .+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~---------~----~~~ 261 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD---------I----KGR 261 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc---------c----CCC
Confidence 34799999999999999998876 5689999999732 12 245667776541 1 167
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSAS 191 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~S 191 (832)
||+|+||+++..+..... ......+..+.++|+|||.|++...+.-.|..+ +..+|..++++ ..
T Consensus 262 fDlIvsNPPFH~g~~~~~------~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~---l~~~Fg~~~~l-------a~ 325 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSL------DAAQTLIRGAVRHLNSGGELRIVANAFLPYPDL---LDETFGSHEVL-------AQ 325 (342)
T ss_pred ccEEEECCCccCCccccH------HHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHH---HHHHcCCeEEE-------Ee
Confidence 899999987554332222 223567889999999999999855554556654 55678877765 12
Q ss_pred cceeEEEeeccCC
Q 003302 192 AEIYLLGIKYKAP 204 (832)
Q Consensus 192 aEiyvVc~gfk~p 204 (832)
...|.|....++.
T Consensus 326 ~~~f~v~~a~~~~ 338 (342)
T PRK09489 326 TGRFKVYRAIMTR 338 (342)
T ss_pred CCCEEEEEEEccC
Confidence 2357777666553
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.91 E-value=1.2e-08 Score=103.70 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||+|||+|.++..++...+ ++.|+|||+++- . .+.++.++++|+... +.
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~---------~~---- 95 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE---------LP---- 95 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---------cC----
Confidence 4778999999999999999998865 579999999972 1 235678888876321 11
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEV 181 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~ 181 (832)
..||+|++++.. +. ....+..+.++|+|||+|++......+...+...+.++ |..+.+
T Consensus 96 ~~~D~v~~~~~~---~~-----------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 96 GKADAIFIGGSG---GN-----------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred cCCCEEEECCCc---cC-----------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 467999997631 10 12345678899999999998655555666777777654 655544
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.90 E-value=1.6e-08 Score=101.90 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
++.+|||||||+|.++..++...+ .|+|+|+++.. ...++.++++|+.+.. .+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-------------~~~ 82 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV-------------RGK 82 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-------------CCc
Confidence 457899999999999999998642 89999999731 1124777888876521 156
Q ss_pred ccEEEeCCCCCCCC------CchhHHh----HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 112 FDLVLHDGSPNVGG------AWAQEAM----SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 112 FDlVlsDgapnv~g------~w~~D~~----~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
||+|+++++..... .|..-.+ ....+....|..+.++|+|||+|++..........++..|.+.
T Consensus 83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~ 156 (179)
T TIGR00537 83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDER 156 (179)
T ss_pred ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhC
Confidence 89999997532111 1100000 0123356778899999999999998655544467777777765
No 48
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.90 E-value=1e-08 Score=109.47 Aligned_cols=122 Identities=18% Similarity=0.211 Sum_probs=83.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.+|||||||+|.++..++...+ +..|+|||+++.. ...++.++++|+.+.. ...+ .+.||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l-----~~~~----~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL-----PTAL----RGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc-----chhc----CCCEeE
Confidence 45899999999999999998876 4689999999732 1234678899987531 1111 156899
Q ss_pred EEeCCCCCCCCCch---hHHh------------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 115 VLHDGSPNVGGAWA---QEAM------------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 115 VlsDgapnv~g~w~---~D~~------------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
|++|++....+.+. .+.. .....+..++..+..+|+|||+|++. +.......++..|..+
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~~~~~~v~~~l~~~ 231 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE-TSERQAPLAVEAFARA 231 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcchHHHHHHHHHHC
Confidence 99998643322211 1100 11233567788899999999999984 5555667788877754
No 49
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.89 E-value=1.1e-08 Score=107.44 Aligned_cols=116 Identities=21% Similarity=0.260 Sum_probs=90.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCC-----CEEEEEeCCC-CC----------CC---CCceEEEccCCChhHHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVG-----SLVLGLDLVP-IA----------PI---RGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~-----~~ViGVDLsp-~~----------~i---~~V~~i~gDIt~~~~~~~l~~ 102 (832)
++++|||+|||||-++..+..+.+.. ++|+.+|++| |. ++ +.+.++.+|..+++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp------- 172 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP------- 172 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-------
Confidence 57999999999999999999998743 7999999998 32 22 23788999998865
Q ss_pred HHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccce
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKV 179 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V 179 (832)
+++ ..||..+.-+ |..+.-+ ...+|+.|+++|+|||+|.|..|.......+.|+.++++-.|
T Consensus 173 -Fdd---~s~D~yTiaf-----GIRN~th------~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 173 -FDD---DSFDAYTIAF-----GIRNVTH------IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred -CCC---CcceeEEEec-----ceecCCC------HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 333 5679988754 3322222 357899999999999999998898776678889999997666
No 50
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.88 E-value=3.2e-09 Score=98.65 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=70.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
|.+|||+|||+|.++..++... ...|+|+|++|.. .+ .++.++++|+++.. ..+.. +
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~~---~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP------EPLPD---G 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH------HTCTT---T
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch------hhccC---c
Confidence 5689999999999999999885 5799999999731 12 45899999987632 11222 7
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.||+|++|++... .+ ........+....+..+.++|+|||.|++.
T Consensus 70 ~~D~Iv~npP~~~--~~-~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 70 KFDLIVTNPPYGP--RS-GDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp -EEEEEE--STTS--BT-T----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEEECCCCcc--cc-ccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7899999986431 11 111111124456788999999999999984
No 51
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.87 E-value=1.9e-08 Score=109.19 Aligned_cols=137 Identities=18% Similarity=0.280 Sum_probs=93.5
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+|||||||+|.++..++...+ +..|+|||+++.. .+. ++.++++|+... +.. ..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---------~~~---~~ 182 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---------LAG---QK 182 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---------CcC---CC
Confidence 6899999999999999998876 5799999999721 233 388999998652 111 36
Q ss_pred ccEEEeCCCCCCCCCc-------hhHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH--c
Q 003302 112 FDLVLHDGSPNVGGAW-------AQEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ--L 175 (832)
Q Consensus 112 FDlVlsDgapnv~g~w-------~~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~--~ 175 (832)
||+|++|++....... ..++. .........+..+..+|+|||+|++.+-... ...+..++.. .
T Consensus 183 fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q-~~~~~~~~~~~~~ 261 (284)
T TIGR00536 183 IDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ-QKSLKELLRIKFT 261 (284)
T ss_pred ccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH-HHHHHHHHHhcCC
Confidence 8999999753211110 00100 1123456778899999999999998765433 2445555552 4
Q ss_pred ccceEEecCCCCCCCCcceeEEE
Q 003302 176 FEKVEVDKPAASRSASAEIYLLG 198 (832)
Q Consensus 176 F~~V~~~KP~sSR~~SaEiyvVc 198 (832)
|..+.+++..+.+. +++++
T Consensus 262 ~~~~~~~~D~~g~~----R~~~~ 280 (284)
T TIGR00536 262 WYDVENGRDLNGKE----RVVLG 280 (284)
T ss_pred CceeEEecCCCCCc----eEEEE
Confidence 78888888877763 66665
No 52
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.87 E-value=1e-08 Score=106.28 Aligned_cols=122 Identities=17% Similarity=0.255 Sum_probs=85.2
Q ss_pred chhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------CCCCceEEEccCCCh
Q 003302 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------PIRGAVSLEQDITKP 94 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------~i~~V~~i~gDIt~~ 94 (832)
+....+..|++....... ..+.+|||||||+|.++..++...+ ...|+|+|+++.. ..+++.++++|+...
T Consensus 15 ~q~~~~~~l~~~~~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~ 92 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGI-FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL 92 (240)
T ss_pred HHHHHHHHHHHHhhhhcc-CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC
Confidence 344555666665444331 2347899999999999999999876 5689999999731 124688899998764
Q ss_pred hHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHH
Q 003302 95 ECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSS 167 (832)
Q Consensus 95 ~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ 167 (832)
.. . .+.||+|+++... .|..+ ...+|..+.++|+|||+|++.++.......
T Consensus 93 ~~--------~---~~~fD~vi~~~~l----~~~~~-------~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~ 143 (240)
T TIGR02072 93 PL--------E---DSSFDLIVSNLAL----QWCDD-------LSQALSELARVLKPGGLLAFSTFGPGTLHE 143 (240)
T ss_pred CC--------C---CCceeEEEEhhhh----hhccC-------HHHHHHHHHHHcCCCcEEEEEeCCccCHHH
Confidence 31 1 1578999998642 22222 235678899999999999998876655443
No 53
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.8e-08 Score=107.59 Aligned_cols=130 Identities=23% Similarity=0.263 Sum_probs=93.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+..|||||||.|.++..+++..| ...|+-||++.+. .+.+..++.+|+.... .+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-------------~~k 224 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-------------EGK 224 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-------------ccc
Confidence 34899999999999999999987 7899999999642 2334456777776632 157
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSAS 191 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~S 191 (832)
||+|+|||++..|-.-.. .+....+..|.+.|++||.+-+-+-+...|.. .|..+|..|.++. .
T Consensus 225 fd~IisNPPfh~G~~v~~------~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~---~L~~~Fg~v~~la-------~ 288 (300)
T COG2813 225 FDLIISNPPFHAGKAVVH------SLAQEIIAAAARHLKPGGELWIVANRHLPYEK---KLKELFGNVEVLA-------K 288 (300)
T ss_pred ccEEEeCCCccCCcchhH------HHHHHHHHHHHHhhccCCEEEEEEcCCCChHH---HHHHhcCCEEEEE-------e
Confidence 899999998764432222 22346778899999999999886666666664 5777898888762 2
Q ss_pred cceeEEEeecc
Q 003302 192 AEIYLLGIKYK 202 (832)
Q Consensus 192 aEiyvVc~gfk 202 (832)
-..|.|.+..+
T Consensus 289 ~~gf~Vl~a~k 299 (300)
T COG2813 289 NGGFKVLRAKK 299 (300)
T ss_pred CCCEEEEEEec
Confidence 23566655543
No 54
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.86 E-value=2.9e-08 Score=112.34 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.++.+|||||||+|.++..++...+ ++.|+|+|+++.. . -.++.++++|+.... +.. .+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~--------l~~--~~ 318 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD--------MPS--EG 318 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc--------ccc--CC
Confidence 4567999999999999998887765 6799999999721 1 125889999986532 110 14
Q ss_pred cccEEEeCCCCCCCCCchh-------HHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-
Q 003302 111 AFDLVLHDGSPNVGGAWAQ-------EAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL- 175 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~-------D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~- 175 (832)
.||+|+||++....+.... ++. .........+..+.++|+|||++++.+-. .....+..++...
T Consensus 319 ~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~G 397 (423)
T PRK14966 319 KWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENG 397 (423)
T ss_pred CccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCC
Confidence 6899999985322211110 000 11123457778888999999999885533 3345666667654
Q ss_pred ccceEEecCCCCCCCCcceeEEEee
Q 003302 176 FEKVEVDKPAASRSASAEIYLLGIK 200 (832)
Q Consensus 176 F~~V~~~KP~sSR~~SaEiyvVc~g 200 (832)
|..+.+.+..+.+ +++|+++.
T Consensus 398 f~~v~v~kDl~G~----dR~v~~~~ 418 (423)
T PRK14966 398 FSGVETLPDLAGL----DRVTLGKY 418 (423)
T ss_pred CcEEEEEEcCCCC----cEEEEEEE
Confidence 8888998888877 47887653
No 55
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.84 E-value=8e-09 Score=110.83 Aligned_cols=97 Identities=23% Similarity=0.283 Sum_probs=73.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++..++..+.|+|||+++. . .++++.++++|+..+. +..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~--------~~~-- 144 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP--------VAD-- 144 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC--------CCC--
Confidence 468899999999999999888888776779999999872 1 2457888899987642 111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+.||+|+++...+ |..+. ..++..++++|+|||+|++.
T Consensus 145 -~~fD~Vi~~~v~~----~~~d~-------~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 145 -NSVDVIISNCVIN----LSPDK-------ERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred -CceeEEEEcCccc----CCCCH-------HHHHHHHHHHcCCCcEEEEE
Confidence 5789999986432 22221 35678899999999999985
No 56
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.83 E-value=8.2e-09 Score=106.60 Aligned_cols=105 Identities=11% Similarity=0.178 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccC-CChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDI-TKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDI-t~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|.++..++...| ++.|+|||+++- . .++++.++++|+ ... ...+..
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l------~~~~~~-- 109 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL------LDMFPD-- 109 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH------HHHcCc--
Confidence 3678999999999999999998875 568999999972 1 346789999998 321 111222
Q ss_pred CCcccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|+++.+. .|... +..........|..+.++|+|||+|++..
T Consensus 110 -~~~D~V~~~~~~----p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 110 -GSLDRIYLNFPD----PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred -cccceEEEECCC----CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 678999997531 12111 00000112456788999999999999843
No 57
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.83 E-value=1.8e-08 Score=108.99 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+++|.+|||||||.|+++.++++.. ++.|+||++|+-. .++ .|.+..+|..+..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------------ 125 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------------ 125 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------------
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------------
Confidence 6899999999999999999999986 5699999999631 233 4788888887632
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.+||.|+|-++...-|.-+ ....+..+.++|+|||.|++..+.
T Consensus 126 --~~fD~IvSi~~~Ehvg~~~---------~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 126 --GKFDRIVSIEMFEHVGRKN---------YPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGG---------HHHHHHHHHHHSETTEEEEEEEEE
T ss_pred --CCCCEEEEEechhhcChhH---------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 4789999987643222111 134567889999999999986543
No 58
>PLN02244 tocopherol O-methyltransferase
Probab=98.83 E-value=1.1e-08 Score=113.84 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|+++..++... ++.|+|||+++.. .+ ++|.++++|+.+.+ +..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~--------~~~-- 184 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP--------FED-- 184 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC--------CCC--
Confidence 567899999999999999999875 4699999999731 12 46899999998743 112
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+.||+|++..+. .+..+ ...++..+.++|+|||+|++..+
T Consensus 185 -~~FD~V~s~~~~----~h~~d-------~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 185 -GQFDLVWSMESG----EHMPD-------KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -CCccEEEECCch----hccCC-------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 678999997542 22222 13567789999999999998654
No 59
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.83 E-value=4e-09 Score=93.07 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=64.2
Q ss_pred EEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 47 LDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 47 LDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
||||||+|.++..++.+ .+..|+|+|+++- . ...++.+.++|+++++. .+ ++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--------~~---~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPF--------PD---NSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS---------T---T-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcc--------cc---ccccccccc
Confidence 89999999999999988 4679999999973 1 23456689999998652 22 788999998
Q ss_pred CCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 119 gapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.... |. .-...+++.+.++|+|||+|++
T Consensus 68 ~~~~----~~-------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLH----HL-------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGG----GS-------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccee----ec-------cCHHHHHHHHHHHcCcCeEEeC
Confidence 6421 22 1235678899999999999986
No 60
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=3.9e-08 Score=102.85 Aligned_cols=116 Identities=23% Similarity=0.210 Sum_probs=87.0
Q ss_pred hcCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEE-ccC
Q 003302 19 EHGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLE-QDI 91 (832)
Q Consensus 19 e~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~-gDI 91 (832)
++.|.||+++||....+.|.+..+|.+|||+|+.||||+++|+++- ..+|+|||....+ .-|+|+.+. .|+
T Consensus 56 ~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~ 133 (245)
T COG1189 56 EQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNV 133 (245)
T ss_pred CcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCCh
Confidence 5789999999999999999999999999999999999999999973 4699999998743 345665543 355
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..... ..+. +..|+++||.++ .++. .+|-.+..+|.|||-++..|
T Consensus 134 r~l~~-----~~~~----~~~d~~v~DvSF-----------ISL~---~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 134 RYLTP-----EDFT----EKPDLIVIDVSF-----------ISLK---LILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred hhCCH-----HHcc----cCCCeEEEEeeh-----------hhHH---HHHHHHHHhcCCCceEEEEe
Confidence 54321 1122 345999999763 2222 34455678899999988754
No 61
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.79 E-value=2.8e-08 Score=110.04 Aligned_cols=111 Identities=22% Similarity=0.183 Sum_probs=77.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++++.+|||+|||+|+++..++.. +..|+|+|+++ |. .+.++.++++|+++.+.. .
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~-- 246 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------S-- 246 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------c--
Confidence 468899999999999998876653 56899999997 21 245578889999875421 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~ 166 (832)
+.||+|++|++......... .....+...+|..+.++|+|||++++.+....+..
T Consensus 247 -~~~D~Iv~dPPyg~~~~~~~--~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~ 301 (329)
T TIGR01177 247 -ESVDAIATDPPYGRSTTAAG--DGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLE 301 (329)
T ss_pred -CCCCEEEECCCCcCcccccC--CchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHH
Confidence 57899999976432111111 11124456788999999999999998554433433
No 62
>PRK14968 putative methyltransferase; Provisional
Probab=98.78 E-value=1.1e-07 Score=95.27 Aligned_cols=120 Identities=21% Similarity=0.309 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC--ceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG--AVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~--V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++.+|||+|||+|.++..++.. ++.|+|+|+++-. ...+ +.++++|+.+. +..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---------~~~- 88 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---------FRG- 88 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---------ccc-
Confidence 56789999999999999999887 4699999999721 1223 77888887652 111
Q ss_pred cCCcccEEEeCCCCCCCCC-ch-hHHh--------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 108 GVRAFDLVLHDGSPNVGGA-WA-QEAM--------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~-w~-~D~~--------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
..||+|+++++....+. +. .+.. .....+..++..+.++|+|||+|++.+........+...+..+
T Consensus 89 --~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~ 164 (188)
T PRK14968 89 --DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKL 164 (188)
T ss_pred --cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHC
Confidence 36899999875332110 00 0000 0122345678899999999999998665545556677777765
No 63
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.78 E-value=1.4e-08 Score=108.31 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------C-CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------P-IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++.. +..|+|||+++ +. . .+++.++++|+.+... +.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-------~~--- 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-------HL--- 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-------hc---
Confidence 45679999999999999999886 46899999997 21 1 2467889998876321 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+.||+|++.... .|..+ ...+|..+.++|+|||+|++.++..
T Consensus 110 ~~~fD~V~~~~vl----~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 110 ETPVDLILFHAVL----EWVAD-------PKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCCCCEEEehhHH----HhhCC-------HHHHHHHHHHHcCCCeEEEEEEECc
Confidence 1678999987532 12222 1356788999999999999854443
No 64
>PRK08317 hypothetical protein; Provisional
Probab=98.77 E-value=1.9e-08 Score=103.91 Aligned_cols=98 Identities=19% Similarity=0.197 Sum_probs=73.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||+|||+|.|+..++..+++.+.|+|+|+++.. ..+++.++++|+.... +. .
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------~~---~ 85 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP--------FP---D 85 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC--------CC---C
Confidence 4678899999999999999999988657899999999731 1346888889987643 11 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|++..... +..+ ...++..+.++|+|||+|++..
T Consensus 86 ~~~D~v~~~~~~~----~~~~-------~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 86 GSFDAVRSDRVLQ----HLED-------PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCceEEEEechhh----ccCC-------HHHHHHHHHHHhcCCcEEEEEe
Confidence 6789999975321 1111 2346778899999999999854
No 65
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.77 E-value=6e-08 Score=99.29 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=77.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++...+ ++.|+|||+++.. .+.++.++++|+... + ..+.
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-----~-~~~~--- 107 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-----L-AQLA--- 107 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH-----H-hhCC---
Confidence 35788999999999999999987655 5799999999721 235688888887541 1 1111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEecC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVDKP 184 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~KP 184 (832)
..+|.|++++. .. ...++..+.++|+|||.|++..........+...+..+ +..+++++.
T Consensus 108 -~~~d~v~~~~~----~~-----------~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 108 -PAPDRVCIEGG----RP-----------IKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred -CCCCEEEEECC----cC-----------HHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEE
Confidence 33578877642 00 13456788899999999998654433333344444433 334444443
No 66
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.77 E-value=2.5e-08 Score=102.62 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||+|||+|.++.++++. +..|+|||+++.. .+.++.++.+|+.+.. + .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--------~----~~ 94 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--------F----DG 94 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC--------c----CC
Confidence 4579999999999999999975 4699999999721 2356778888876532 1 15
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.||+|+|..... |... .....++..+.++|+|||.|++
T Consensus 95 ~fD~I~~~~~~~----~~~~-----~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 95 EYDFILSTVVLM----FLEA-----KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CcCEEEEecchh----hCCH-----HHHHHHHHHHHHHcCCCcEEEE
Confidence 689999976421 2111 1234677889999999999765
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.77 E-value=1.5e-08 Score=103.89 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
...+|||||||+|.++..++...| ...|+|||+++. . .+.+|.++++|+.+.. ...+.. +
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-----~~~~~~---~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-----DKFFPD---G 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-----HhhCCC---C
Confidence 567999999999999999998876 679999999962 1 3468999999987532 111221 4
Q ss_pred cccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 111 AFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
.||.|+++.+. .|... +....-+....+..+.++|+|||.|++.+.....+..++..|..
T Consensus 87 ~~d~v~~~~pd----pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 87 SLSKVFLNFPD----PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred ceeEEEEECCC----cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 68999998532 23211 00000112456788999999999998854333223334445544
No 68
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.76 E-value=1.7e-08 Score=109.76 Aligned_cols=127 Identities=23% Similarity=0.269 Sum_probs=91.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++|..|||+||||||.+.+++..|+..+.|+++|+++-. .+.++.++..|.+.... ....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~------~~~~-- 154 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP------KKPE-- 154 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH------HHHT--
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc------cccc--
Confidence 3688999999999999999999999988999999999621 34567777777665321 1111
Q ss_pred CCcccEEEeCCCCCCCCCchhH-----------HhHHhHHHHHHHHHHHhhc----ccCcEEEEEE---cCCCCHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQE-----------AMSQNALVIDSVKLATQFL----APKGTFVTKV---FRSQDYSSVLY 170 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D-----------~~~q~~L~~~aLk~A~~~L----kpGG~fV~KV---Frs~d~~~ll~ 170 (832)
..||.|+.|+++...|.+..+ ......++..+|..|.++| +|||++|..+ +..++...+-+
T Consensus 155 -~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~ 233 (283)
T PF01189_consen 155 -SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEK 233 (283)
T ss_dssp -TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHH
T ss_pred -cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHH
Confidence 358999999987665544221 1122356788899999999 9999999754 44556555666
Q ss_pred HHHHc
Q 003302 171 CLKQL 175 (832)
Q Consensus 171 ~L~~~ 175 (832)
.++++
T Consensus 234 fl~~~ 238 (283)
T PF01189_consen 234 FLKRH 238 (283)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 67664
No 69
>PRK14967 putative methyltransferase; Provisional
Probab=98.76 E-value=7.7e-08 Score=100.61 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=82.5
Q ss_pred HHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CC--CCceEEEccCCChhHH
Q 003302 28 WKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PI--RGAVSLEQDITKPECR 97 (832)
Q Consensus 28 fKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i--~~V~~i~gDIt~~~~~ 97 (832)
..|+....... +.++.+|||+|||+|.++..++.. + .+.|+|||+++.. .. .++.++++|+...
T Consensus 23 ~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--- 96 (223)
T PRK14967 23 QLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--- 96 (223)
T ss_pred HHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh---
Confidence 34444443333 467789999999999999988875 3 3589999999721 01 2467778887642
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCC-----------chhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHH
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGA-----------WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~-----------w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~ 166 (832)
+.. ..||+|++|++...... |... .....++..++..+.++|+|||.|++..-...+..
T Consensus 97 ------~~~---~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~ 166 (223)
T PRK14967 97 ------VEF---RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAG-PDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVE 166 (223)
T ss_pred ------ccC---CCeeEEEECCCCCCCCcccccccChhHhhhCC-CcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHH
Confidence 111 57899999974221100 1100 01123456778889999999999997332223556
Q ss_pred HHHHHHHH
Q 003302 167 SVLYCLKQ 174 (832)
Q Consensus 167 ~ll~~L~~ 174 (832)
.++..+..
T Consensus 167 ~~~~~l~~ 174 (223)
T PRK14967 167 RTLTRLSE 174 (223)
T ss_pred HHHHHHHH
Confidence 66666654
No 70
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.76 E-value=2.3e-08 Score=107.41 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=71.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||||||+|+++..++... ++.|+|||+++.. ...+|.++++|++..+ +. .+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~--------~~---~~ 116 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD--------FP---EN 116 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC--------CC---CC
Confidence 4678899999999999999888764 4699999999721 1246888999987633 11 16
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+||+|++..+.. ++.. .-...+|+.+.++|+|||+|++..+
T Consensus 117 ~FD~V~s~~~l~---h~~~------~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 117 TFDMIYSRDAIL---HLSY------ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CeEEEEEhhhHH---hCCH------HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 789999854211 1111 1134678899999999999998655
No 71
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.76 E-value=7.8e-09 Score=100.49 Aligned_cols=99 Identities=23% Similarity=0.362 Sum_probs=69.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
+.++.+|||+|||+|.++..++.. +..|+|+|+++. .....+.+...+..... .. .+.||+|+|.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEKRNVVFDNFDAQDPP--------FP---DGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHHTTSEEEEEECHTHH--------CH---SSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhhhhhhhhhhhhhhhh--------cc---ccchhhHhhH
Confidence 567889999999999999999765 349999999972 21133333333333321 11 2788999998
Q ss_pred CCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 119 gapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
... .|..+ ...+|..+.++|+|||+|++.++...
T Consensus 86 ~~l----~~~~d-------~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 86 DVL----EHLPD-------PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSG----GGSSH-------HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HHH----hhccc-------HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 642 23332 34678889999999999999877654
No 72
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.74 E-value=3.2e-08 Score=109.47 Aligned_cols=109 Identities=26% Similarity=0.326 Sum_probs=74.8
Q ss_pred HHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------------CCCCceEEEccCC
Q 003302 25 RASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------------PIRGAVSLEQDIT 92 (832)
Q Consensus 25 RaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt 92 (832)
|+.++.-.+...+..+ .|.+|||||||+|.++..++...+ ..|+|||+++.. ...+|.++.+|+.
T Consensus 106 ~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e 182 (322)
T PRK15068 106 RSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE 182 (322)
T ss_pred hHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH
Confidence 3444433333333333 578999999999999999888732 379999999731 1236888888887
Q ss_pred ChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 93 KPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 93 ~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.+. .+.||+|+|.+... |..+ ....|+.+.+.|+|||.||+..
T Consensus 183 ~lp~------------~~~FD~V~s~~vl~----H~~d-------p~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 183 QLPA------------LKAFDTVFSMGVLY----HRRS-------PLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred HCCC------------cCCcCEEEECChhh----ccCC-------HHHHHHHHHHhcCCCcEEEEEE
Confidence 6431 16789999976421 2222 2356788999999999999864
No 73
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.74 E-value=5.2e-08 Score=102.71 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=71.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCC-CC--------C---CCCceEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVP-IA--------P---IRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp-~~--------~---i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
+.++.+|||||||+|.++..+++..+ +++.|+|||+++ |. . ..++.++++|+.+..
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 119 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE----------- 119 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------
Confidence 46788999999999999999988753 478999999986 21 1 235788999987642
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
...+|+|++..+. +|..+. -...++..+.++|+|||.|++.-
T Consensus 120 --~~~~d~v~~~~~l----~~~~~~-----~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 120 --IKNASMVILNFTL----QFLPPE-----DRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred --CCCCCEEeeecch----hhCCHH-----HHHHHHHHHHHhcCCCeEEEEee
Confidence 1346999987542 122111 12467889999999999999853
No 74
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.73 E-value=4.9e-08 Score=105.14 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCC--CEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVG--SLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~--~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+..+|||+|||+|.++..++..++.. ..|+|||+++.. ..+++.++++|+.+.+ +.. ++|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp--------~~~---~sf 152 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP--------FAD---QSL 152 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC--------CcC---Cce
Confidence 345789999999999999998876532 479999999721 3578899999988743 112 678
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
|+|++..+|. .+..+.++|+|||+|++.++.+..
T Consensus 153 D~I~~~~~~~------------------~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 153 DAIIRIYAPC------------------KAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred eEEEEecCCC------------------CHHHHHhhccCCCEEEEEeCCCcc
Confidence 9999865421 123567899999999985544433
No 75
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.73 E-value=2.5e-08 Score=103.71 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++.+++...+..++|+|||+++- . .+.++.++++|+.... . .
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~---------~--~ 143 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW---------E--P 143 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC---------c--c
Confidence 468899999999999999999998776778999999962 1 2457889999987531 0 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
...||+|++++++. . +...+.+.|+|||+|++-+
T Consensus 144 ~~~fD~Ii~~~~~~----~-------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 144 LAPYDRIYVTAAGP----K-------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCCCEEEEcCCcc----c-------------ccHHHHHhcCcCcEEEEEE
Confidence 15789999986421 0 1123567899999999843
No 76
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.73 E-value=9.7e-08 Score=103.95 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=77.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
..++.+|||+|||+|.++..++.. + ...|+|||+++.. .+. .+.++.+++.. ..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~----------~~-- 222 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ----------PI-- 222 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc----------cc--
Confidence 357899999999999999888764 3 4589999999732 121 23344444221 01
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~ 181 (832)
.+.||+|+++... +. +..++..+.++|+|||+|++.-+.......+...+.+.|..+.+
T Consensus 223 -~~~fDlVvan~~~--------~~------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~ 281 (288)
T TIGR00406 223 -EGKADVIVANILA--------EV------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEI 281 (288)
T ss_pred -CCCceEEEEecCH--------HH------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeE
Confidence 1578999998521 11 23466788999999999999877666667777777776655544
No 77
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.71 E-value=8.8e-08 Score=112.02 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=88.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+|||||||+|.++..++...| ++.|+|||+++.. .+ .+|.++++|+... +.. +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~---------~~~---~ 205 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN---------IEK---Q 205 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---------CcC---C
Confidence 46899999999999999988876 5799999999721 12 3577888887541 111 5
Q ss_pred cccEEEeCCCCCCCCCch---------hHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 111 AFDLVLHDGSPNVGGAWA---------QEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~---------~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
.||+|+||++. +...+. .++. ........++..+..+|+|||+|++.+-.. ....+..++..
T Consensus 206 ~fDlIvsNPPY-i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~-q~~~v~~~~~~ 283 (506)
T PRK01544 206 KFDFIVSNPPY-ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK-QEEAVTQIFLD 283 (506)
T ss_pred CccEEEECCCC-CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc-hHHHHHHHHHh
Confidence 68999999742 221110 0110 012334567788899999999999865333 33455555554
Q ss_pred -cccceEEecCCCCCC
Q 003302 175 -LFEKVEVDKPAASRS 189 (832)
Q Consensus 175 -~F~~V~~~KP~sSR~ 189 (832)
.|..+.+.+..+.+.
T Consensus 284 ~g~~~~~~~~D~~g~~ 299 (506)
T PRK01544 284 HGYNIESVYKDLQGHS 299 (506)
T ss_pred cCCCceEEEecCCCCc
Confidence 377788888888774
No 78
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.71 E-value=5.9e-08 Score=107.29 Aligned_cols=97 Identities=22% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------C-CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------P-IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||+|.++..++.. ++.|+|||+++- . + ..+|.++++|+.+.. +.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~--------~~--- 195 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA--------DE--- 195 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--------hc---
Confidence 35779999999999999988864 569999999962 1 1 136788888876532 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+.||+|+|... ..++.. ...+|..+.++|+|||.|++.++..
T Consensus 196 ~~~FD~Vi~~~v--------LeHv~d---~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 196 GRKFDAVLSLEV--------IEHVAN---PAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred cCCCCEEEEhhH--------HHhcCC---HHHHHHHHHHHcCCCcEEEEEECCc
Confidence 167899999642 122111 2356778899999999999976543
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.70 E-value=3.2e-08 Score=103.06 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++..++..++|+|||+++- . .+.++.++++|..... . .
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~--------~---~ 142 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY--------E---E 142 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC--------C---c
Confidence 468999999999999999999998877789999999962 1 2457899999987532 0 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.++||+|+++++. ... ...+.+.|+|||+|++-
T Consensus 143 ~~~fD~I~~~~~~----~~~-------------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 143 NAPYDRIYVTAAG----PDI-------------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCCcCEEEECCCc----ccc-------------hHHHHHhhCCCcEEEEE
Confidence 2678999998641 011 11345689999999983
No 80
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.70 E-value=3.2e-08 Score=90.34 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=60.5
Q ss_pred EEEEcCCcCHHHHHHHHhCC--CCCEEEEEeCCC-CC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 46 VLDLCAAPGGWMQVAVQRVP--VGSLVLGLDLVP-IA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 46 VLDLGcGPGg~sq~La~~~p--~~~~ViGVDLsp-~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
|||||||+|.++..+....+ +...++|||+++ +. .-+.+.++++|+++... .. ++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~--------~~---~~~D 69 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF--------SD---GKFD 69 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH--------HS---SSEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc--------cC---CCee
Confidence 79999999999999998873 237999999997 21 12478999999988531 11 6889
Q ss_pred EEEeCCC-CCCCCCchhHHhHHhHHHHHHHHHHHhhcccCc
Q 003302 114 LVLHDGS-PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKG 153 (832)
Q Consensus 114 lVlsDga-pnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG 153 (832)
+|++.+. .. ++. ...+..++..+.++|+|||
T Consensus 70 ~v~~~~~~~~--------~~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 70 LVVCSGLSLH--------HLS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEE-TTGGG--------GSS-HHHHHHHHHHHHHTEEEEE
T ss_pred EEEEcCCccC--------CCC-HHHHHHHHHHHHHHhCCCC
Confidence 9999653 21 111 1223567888999999998
No 81
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.69 E-value=2e-07 Score=105.93 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC--CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API--RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i--~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.+|.+|||||||+|+|+..++. +....|++||+++. +.+ .++.++++|+.+. +.. +..
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~-----l~~-~~~- 289 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL-----LRT-YRD- 289 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH-----HHH-HHh-
Confidence 3578999999999999887664 23459999999962 123 2578999998653 111 111
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-CHHHHHHHHHH
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-DYSSVLYCLKQ 174 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d~~~ll~~L~~ 174 (832)
..++||+|++|++...... ...+....-....+..|..+|+|||.|++....+. +...+..++..
T Consensus 290 ~~~~fDlVilDPP~f~~~k--~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENK--SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred cCCCCCEEEECCCCCCCCh--HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 1157899999986433221 11111112234566789999999999997543322 33445555443
No 82
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.69 E-value=5.6e-08 Score=102.52 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=50.0
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
-|++|+++||..+...|.+..++.+|||+|||||+|++.+++. + ...|+|||+++
T Consensus 54 ~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~ 108 (228)
T TIGR00478 54 LFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGY 108 (228)
T ss_pred chhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCH
Confidence 4999999999999999987678899999999999999999986 3 46899999998
No 83
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.69 E-value=6.4e-08 Score=105.24 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=79.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++.+|||||||+|.++..++...+ ++.|+|||+++.. .+ .++.++++|+.+. +..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~---------~~~--- 187 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA---------LPG--- 187 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---------cCC---
Confidence 456899999999999999998876 5799999999621 23 3588899998642 111
Q ss_pred CcccEEEeCCCCCCCCCc-------hhHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 110 RAFDLVLHDGSPNVGGAW-------AQEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w-------~~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
..||+|++|++....+.. ..++. ....+....+..+.++|+|||+|++.+-.. ...+...+..
T Consensus 188 ~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~--~~~v~~~~~~ 264 (284)
T TIGR03533 188 RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS--MEALEEAYPD 264 (284)
T ss_pred CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHHh
Confidence 468999999753221111 00110 112345677889999999999999876532 2344444443
No 84
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.68 E-value=1e-07 Score=101.39 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=70.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCC-CC----------CC-CCceEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVP-IA----------PI-RGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp-~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
+.++.+|||||||+|.++..++..+ .+++.|+|||+++ |. .. .+|.++++|+.+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~----------- 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA----------- 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-----------
Confidence 5678899999999999998888754 3478999999997 32 12 26889999987632
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
...||+|+++... ++..+ .....++..+.++|+|||.|++.
T Consensus 123 --~~~~D~vv~~~~l----~~l~~-----~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 --IENASMVVLNFTL----QFLEP-----SERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred --CCCCCEEehhhHH----HhCCH-----HHHHHHHHHHHHhcCCCCEEEEE
Confidence 1446999986431 11111 11246778899999999999884
No 85
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.68 E-value=8e-08 Score=108.71 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCC--CceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIR--GAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~--~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++.+|||+|||+|+++..++... ++.|+|||+++.. ... ++.+..+|+.+. . +.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-----------~---~~ 228 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-----------N---GQ 228 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-----------C---CC
Confidence 4688999999999999999998875 4689999999721 112 356666665431 1 67
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
||+|++.+.....+.. .....+..+.++|+|||.|++..+.
T Consensus 229 fD~Ivs~~~~ehvg~~---------~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 229 FDRIVSVGMFEHVGPK---------NYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCEEEEeCchhhCChH---------HHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 8999997643221111 1235677899999999999986543
No 86
>PRK04457 spermidine synthase; Provisional
Probab=98.67 E-value=1.3e-07 Score=101.69 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------C--CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------P--IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||||||.|.++..++...| .+.|++||++|.. + .+++.++++|+... +...
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~---------l~~~- 133 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY---------IAVH- 133 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH---------HHhC-
Confidence 4567899999999999999988876 6799999998721 1 25688889987642 1111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC-CCHHHHHHHHHHcccc-eEEe
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS-QDYSSVLYCLKQLFEK-VEVD 182 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs-~d~~~ll~~L~~~F~~-V~~~ 182 (832)
..+||+|++|+... .+ ...+.. ....+..+.++|+|||+|++-++.. ..+..++..+++.|.. +.++
T Consensus 134 ~~~yD~I~~D~~~~-~~--~~~~l~----t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~ 202 (262)
T PRK04457 134 RHSTDVILVDGFDG-EG--IIDALC----TQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLEL 202 (262)
T ss_pred CCCCCEEEEeCCCC-CC--CccccC----cHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEE
Confidence 15789999996211 11 111111 2466778999999999999866543 3467778888999975 4444
No 87
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=98.67 E-value=6.4e-08 Score=101.70 Aligned_cols=156 Identities=24% Similarity=0.309 Sum_probs=98.0
Q ss_pred CCCCEEEEEcCC------cCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAA------PGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcG------PGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+..++||+|||| || +.+|.+.+|.++.++-.|+.....-.++ .+.+|.++..+ ...||+
T Consensus 60 P~nMrVlHlGAgSdkGvaPG--t~VLrqwlP~~ailvDnDi~d~vSDa~~-~~~~Dc~t~~~------------~~k~Dl 124 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPG--TAVLRQWLPEDAILVDNDIRDYVSDADQ-SIVGDCRTYMP------------PDKFDL 124 (299)
T ss_dssp -TT-EEEEES---TTSB-HH--HHHHHHHS-TT-EEEEEESS--B-SSSE-EEES-GGGEEE------------SS-EEE
T ss_pred ccCcEEEEecccccCCcCCc--hHHHHHhCCCCcEEEecchhhhccccCC-ceeccccccCC------------CCcccE
Confidence 457899999975 56 4789999999999999999986544443 46788877532 167799
Q ss_pred EEeCCC----CCCCCC-chhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCC
Q 003302 115 VLHDGS----PNVGGA-WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRS 189 (832)
Q Consensus 115 VlsDga----pnv~g~-w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~ 189 (832)
|+||+- -++.+. -..+.+ ..-++..+.+-|+-||.+++|+..... +.-++.|-++|.-++++ ..+-..
T Consensus 125 IiSDmYd~~~k~~~~~n~~~~~f-----F~yl~~~i~~kLaLGGSvaiKiTE~Sw-~~~Lyel~~~F~~wt~F-cT~VNt 197 (299)
T PF06460_consen 125 IISDMYDGRTKNCDGENNSKEGF-----FTYLCGFIKEKLALGGSVAIKITEHSW-NAQLYELMGYFSWWTCF-CTAVNT 197 (299)
T ss_dssp EEE----TTS-SS-S------TH-----HHHHHHHHHHHEEEEEEEEEEE-SSS---HHHHHHHTTEEEEEEE-EEGGGT
T ss_pred EEEecccccccccccccCCcccc-----HHHHHHHHHhhhhcCceEEEEeecccc-cHHHHHHHhhcccEEEE-ecccCc
Confidence 999973 111121 122222 223456678899999999999976554 77788899999999987 346677
Q ss_pred CCcceeEEEeeccCC----CCCCCCccchhhhc
Q 003302 190 ASAEIYLLGIKYKAP----AKIDPRLLDVKYLF 218 (832)
Q Consensus 190 ~SaEiyvVc~gfk~p----~~id~~~ldp~~vf 218 (832)
+|||.|++|.+|.+. ..||...+...|+|
T Consensus 198 SSSEaFLigiNYLg~~~~~~~IdG~~mHAnYif 230 (299)
T PF06460_consen 198 SSSEAFLIGINYLGKFSEGEIIDGNVMHANYIF 230 (299)
T ss_dssp TSS-EEEEEEEE-SS---SS---HHHHHHHHHH
T ss_pred cccceeEEeeeccCccccccccchHHHHHHHHH
Confidence 899999999999986 34677777778888
No 88
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.66 E-value=9.1e-08 Score=105.42 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=67.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+|.+|||+|||+|.++..++... ...|+|||+++. . ...++.++.+++.+.. .
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp----------~-- 185 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH----------E-- 185 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC----------C--
Confidence 457899999999999988887653 247999999982 1 1234666777765432 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
...||+|+|.+... |..+ ...+|+.+.++|+|||.||+..+
T Consensus 186 ~~~FD~V~s~gvL~----H~~d-------p~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 186 LYAFDTVFSMGVLY----HRKS-------PLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCCcCEEEEcchhh----ccCC-------HHHHHHHHHHhcCCCCEEEEEEE
Confidence 14689999987421 2222 23577889999999999998643
No 89
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.65 E-value=8e-08 Score=98.70 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=63.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-CC-------CC--CceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-AP-------IR--GAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~~-------i~--~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.+|||+|||+|.++..|+.. +..|+|||+++. .. .. .+.+.++|+.... +. ..|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~--------~~----~~f 95 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA--------LN----EDY 95 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc--------cc----CCC
Confidence 468999999999999999975 469999999972 10 11 2556666765422 11 468
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|+|++..... +... ......+..+.++|+|||+|++-.
T Consensus 96 D~I~~~~~~~----~~~~-----~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 96 DFIFSTVVFM----FLQA-----GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CEEEEecccc----cCCH-----HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 9999976432 1111 123456788999999999976533
No 90
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.65 E-value=1.2e-07 Score=97.03 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=81.1
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.++|++|||.|.++..|+.++ ..++++|+++. ...++|.++++|+.... +.+.||+
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~------------P~~~FDL 109 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW------------PEGRFDL 109 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------------SS-EEE
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC------------CCCCeeE
Confidence 579999999999999999985 48999999963 35689999999997742 3488999
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC---------CCHHHHHHHHHHcccceEEec
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS---------QDYSSVLYCLKQLFEKVEVDK 183 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs---------~d~~~ll~~L~~~F~~V~~~K 183 (832)
|+.....++ .+. ...+..++..+...|.|||+||+-.++. ..-..++.+|+..|.+|..+.
T Consensus 110 IV~SEVlYY-----L~~---~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~ 179 (201)
T PF05401_consen 110 IVLSEVLYY-----LDD---AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVE 179 (201)
T ss_dssp EEEES-GGG-----SSS---HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEE
T ss_pred EEEehHhHc-----CCC---HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEE
Confidence 998753221 111 1223456778889999999999987764 233467788999999988763
No 91
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.64 E-value=6.7e-08 Score=99.32 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++.+|||+|||+|.++..++...+..+.++|+|+++.. ...++.++.+|+.... +. .+.
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~---~~~ 106 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP--------FE---DNS 106 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC--------CC---CCc
Confidence 367899999999999999999988754799999998621 1235788888887643 11 156
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
||+|++.... .+..+ ...+++.+..+|+|||+|++..+..
T Consensus 107 ~D~i~~~~~~----~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 107 FDAVTIAFGL----RNVTD-------IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEEEEeeee----CCccc-------HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 8999986432 11111 2356788999999999999865543
No 92
>PRK06922 hypothetical protein; Provisional
Probab=98.64 E-value=6.6e-08 Score=114.13 Aligned_cols=103 Identities=13% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-------C--CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-------P--IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-------~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
++.+|||+|||+|.++..++...| ++.|+|+|+++. . . ..++.++++|+.+++ ..+.. ++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp------~~fed---eS 487 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS------SSFEK---ES 487 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc------cccCC---CC
Confidence 578999999999999988888776 679999999972 1 1 124677888886532 11222 67
Q ss_pred ccEEEeCCCCCCCCCchhHHh------HHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAM------SQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~------~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
||+|+++.... |..+.. .....+..+|+.+.++|+|||.|++.
T Consensus 488 FDvVVsn~vLH----~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 488 VDTIVYSSILH----ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred EEEEEEchHHH----hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 89999875321 111000 00123467888999999999999984
No 93
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.64 E-value=9.3e-08 Score=98.96 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=68.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CCC-CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PIR-GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++.++++.++..+.|+|||+++- . .+. ++.++.+|+.... .
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~---------~-- 138 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL---------E-- 138 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC---------c--
Confidence 357889999999999999999998876779999999972 1 122 4788899987531 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..++||+|+++++.. +.. ..+.+.|+|||+|++-+
T Consensus 139 ~~~~fD~Ii~~~~~~----~~~-------------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 139 KHAPFDAIIVTAAAS----TIP-------------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCCccEEEEccCcc----hhh-------------HHHHHhcCcCcEEEEEE
Confidence 115789999986521 111 23568899999998854
No 94
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.64 E-value=5.2e-08 Score=112.80 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=72.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.++.+|||+|||+|+++..++... ++.|+|||+++. . .. .++.++++|+.... +..
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~--------~~~--- 330 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT--------YPD--- 330 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--------CCC---
Confidence 4678899999999999999998875 569999999962 1 11 35788999988743 111
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+.||+|+|.++. .|..+. ..++..+.++|+|||+|++..+
T Consensus 331 ~~fD~I~s~~~l----~h~~d~-------~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 331 NSFDVIYSRDTI----LHIQDK-------PALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCEEEEEECCcc----cccCCH-------HHHHHHHHHHcCCCeEEEEEEe
Confidence 578999997642 222222 3567889999999999998654
No 95
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=9.1e-08 Score=105.50 Aligned_cols=140 Identities=22% Similarity=0.304 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
++||.+|||||||||+-+..+.+... ..+.|++.|+++.. +.+++.+...|++..+... +. ...
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~-~~-~~~ 230 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIY-LK-DGN 230 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccc-cc-cCc
Confidence 47999999999999999855555442 24599999999631 3345555566665543211 00 000
Q ss_pred hccCCcccEEEeCCCCCCCCC-----------chhHH-hHHhHHHHHHHHHHHhhcccCcEEEEEEcCC---CCHHHHHH
Q 003302 106 EHGVRAFDLVLHDGSPNVGGA-----------WAQEA-MSQNALVIDSVKLATQFLAPKGTFVTKVFRS---QDYSSVLY 170 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~-----------w~~D~-~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs---~d~~~ll~ 170 (832)
......||-|+||.++...|. |.... .....|+..+|..++++|++||++|.++-.. ++..-+-.
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~ 310 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQE 310 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHH
Confidence 112257899999987654332 22222 2223667888999999999999999866433 23334456
Q ss_pred HHHHcccceEE
Q 003302 171 CLKQLFEKVEV 181 (832)
Q Consensus 171 ~L~~~F~~V~~ 181 (832)
+|+.++..+.+
T Consensus 311 ~L~~~~~~~~l 321 (375)
T KOG2198|consen 311 ALQKVGGAVEL 321 (375)
T ss_pred HHHHhcCcccc
Confidence 67766655443
No 96
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.4e-07 Score=99.49 Aligned_cols=128 Identities=21% Similarity=0.292 Sum_probs=86.0
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+|||||||+|..+..++...| .+.|+|+|+++-+ .+.++.++++|+... +. ++||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~---------~~----~~fD 178 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP---------LR----GKFD 178 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc---------cC----Ccee
Confidence 799999999999999999987 5799999999721 223456667776653 11 5789
Q ss_pred EEEeCCCCCCCCC-c--h-----hHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc--c
Q 003302 114 LVLHDGSPNVGGA-W--A-----QEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL--F 176 (832)
Q Consensus 114 lVlsDgapnv~g~-w--~-----~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~--F 176 (832)
+|+|||+ .+... . . .++. .........+..+..+|+|||++++.+-... -..+...|... |
T Consensus 179 lIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q-~~~v~~~~~~~~~~ 256 (280)
T COG2890 179 LIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ-GEAVKALFEDTGFF 256 (280)
T ss_pred EEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc-HHHHHHHHHhcCCc
Confidence 9999984 32221 0 0 1111 1234567788899999999999998653333 34555555533 4
Q ss_pred cceEEecCCCCC
Q 003302 177 EKVEVDKPAASR 188 (832)
Q Consensus 177 ~~V~~~KP~sSR 188 (832)
..|...+....+
T Consensus 257 ~~v~~~~d~~g~ 268 (280)
T COG2890 257 EIVETLKDLFGR 268 (280)
T ss_pred eEEEEEecCCCc
Confidence 566777665554
No 97
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.61 E-value=1.6e-07 Score=104.50 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 38 SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 38 ~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+..++.+|||||||+|.++..++...+ ...|+|+|+++ |. ...++.++++|+.+.. +. .
T Consensus 109 ~l~~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp--------~~---~ 176 (340)
T PLN02490 109 DLSDRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP--------FP---T 176 (340)
T ss_pred ccCCCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC--------CC---C
Confidence 3335678999999999999998888775 46899999986 21 2357888888887643 11 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+.||+|++.++.+. ..+ ...+|+.+.++|+|||+|++.
T Consensus 177 ~sFDvVIs~~~L~~----~~d-------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 177 DYADRYVSAGSIEY----WPD-------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred CceeEEEEcChhhh----CCC-------HHHHHHHHHHhcCCCcEEEEE
Confidence 67899999764321 111 124688999999999999874
No 98
>PHA03412 putative methyltransferase; Provisional
Probab=98.60 E-value=8.7e-08 Score=101.07 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=67.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC--CCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP--VGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p--~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.+|||||||+|.++..++..++ ....|+|||+++.. .++++.++++|+.... + .+.||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~--------~----~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTE--------F----DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc--------c----cCCccE
Confidence 67999999999999999988764 24689999999832 3567889999987532 1 157899
Q ss_pred EEeCCCCCCCCCchhHH-hHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 115 VLHDGSPNVGGAWAQEA-MSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~-~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|++|++........... +....+...++..|.++|++|+ ||+
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 99999755322111000 1112333456777778555555 544
No 99
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.58 E-value=1.6e-07 Score=103.28 Aligned_cols=105 Identities=22% Similarity=0.309 Sum_probs=73.3
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+|||||||+|.++..++...| +..|+|+|+++.. .+ .++.++++|+.+. +.. ..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~---------l~~---~~ 201 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA---------LPG---RR 201 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh---------CCC---CC
Confidence 6899999999999999998875 6799999999721 22 2488999998542 111 46
Q ss_pred ccEEEeCCCCCCCCCc-------hhHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 112 FDLVLHDGSPNVGGAW-------AQEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 112 FDlVlsDgapnv~g~w-------~~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
||+|++|++....... ..++. ....+....+..+.++|+|||+|++.+..
T Consensus 202 fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 202 YDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred ccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 8999999753211111 00000 11244567788999999999999996654
No 100
>PRK00811 spermidine synthase; Provisional
Probab=98.57 E-value=5.7e-07 Score=97.80 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------------CCCCceEEEccCCChhHHHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------------PIRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------------~i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
....+||+||||.|+.+..++++.+ ...|++||+++.. .-+++.++.+|.... +
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~---------l 144 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF---------V 144 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH---------H
Confidence 3567899999999999998887633 4689999999721 135688888887542 1
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC----CCHHHHHHHHHHcccceE
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS----QDYSSVLYCLKQLFEKVE 180 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs----~d~~~ll~~L~~~F~~V~ 180 (832)
.. ..++||+|++|..+..+.. ... .....+..+.+.|+|||.|++-+-.. ..+..+...|+..|..|.
T Consensus 145 ~~-~~~~yDvIi~D~~dp~~~~---~~l----~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~ 216 (283)
T PRK00811 145 AE-TENSFDVIIVDSTDPVGPA---EGL----FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVR 216 (283)
T ss_pred hh-CCCcccEEEECCCCCCCch---hhh----hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEE
Confidence 11 1267899999974322111 111 12456678899999999999843222 123455667788899887
Q ss_pred Eec-CCCCCCCCcceeEEEee
Q 003302 181 VDK-PAASRSASAEIYLLGIK 200 (832)
Q Consensus 181 ~~K-P~sSR~~SaEiyvVc~g 200 (832)
.+. ++.+.+...-.|++|..
T Consensus 217 ~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 217 PYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred EEEeECCcccCchheeEEeec
Confidence 764 34444455567788754
No 101
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.56 E-value=5.4e-07 Score=91.60 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+|++++|+|||+|+.+.-++ ++++.++|+|||-++-. ..+|+..+.++.-.. |.+.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~---------L~~~- 100 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA---------LPDL- 100 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh---------hcCC-
Confidence 5789999999999999999999 56668999999987521 367888899887542 2221
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL 175 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~ 175 (832)
..||.|+..|.- . +..+|..+...|+|||.+|+-.-+......++..|.++
T Consensus 101 -~~~daiFIGGg~------~---------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 101 -PSPDAIFIGGGG------N---------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred -CCCCEEEECCCC------C---------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 257999998741 1 13456678899999999999777777767777777765
No 102
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.55 E-value=1.4e-07 Score=97.92 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=66.8
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+|||+|||+|+++..++...+ ++.|+|+|+++.. .+ .++.++++|+.... + .+.|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--------~----~~~f 68 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--------F----PDTY 68 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--------C----CCCC
Confidence 699999999999999998875 5789999999731 11 34788888886532 1 1568
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
|+|++..... +..+ ....|..+.++|+|||+|++..+
T Consensus 69 D~I~~~~~l~----~~~~-------~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 69 DLVFGFEVIH----HIKD-------KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CEeehHHHHH----hCCC-------HHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999864321 1111 23567788999999999998544
No 103
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.55 E-value=2.8e-07 Score=95.72 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C---CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P---IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++...+....|+|+|+++.. . ..++.++.+|+.+.. +.
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~--- 118 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--------FP--- 118 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--------CC---
Confidence 367899999999999999999987656799999998621 1 235788889987643 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+.||+|++..... +..+ ....|..+..+|+|||.|++..+..
T Consensus 119 ~~~~D~I~~~~~l~----~~~~-------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 119 DNSFDAVTIAFGLR----NVPD-------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCCccEEEEecccc----cCCC-------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 15789999864311 1111 2345778889999999998865543
No 104
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.54 E-value=5.8e-07 Score=98.48 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=78.9
Q ss_pred chhHHHHHHHhhhhh-c-CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---------CCCC--ceEE
Q 003302 22 YRSRASWKLVQLDSK-F-SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---------PIRG--AVSL 87 (832)
Q Consensus 22 yrsRaafKLiqi~~k-f-~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---------~i~~--V~~i 87 (832)
|..|.-..+++-... + ..+.++.+|||||||+|.++..|+..++.+..|+|||+++ |. ..|+ |.++
T Consensus 41 y~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i 120 (301)
T TIGR03438 41 YPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGI 120 (301)
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEE
Confidence 445555544432111 1 1345778999999999999999998875456899999997 31 1344 5678
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHH
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYS 166 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~ 166 (832)
++|+++... ...... ....+|+.-|+.+ ++...+. ....|+.+.++|+|||.|++-+....+..
T Consensus 121 ~gD~~~~~~------~~~~~~-~~~~~~~~~gs~~--~~~~~~e------~~~~L~~i~~~L~pgG~~lig~d~~~~~~ 184 (301)
T TIGR03438 121 CADFTQPLA------LPPEPA-AGRRLGFFPGSTI--GNFTPEE------AVAFLRRIRQLLGPGGGLLIGVDLVKDPA 184 (301)
T ss_pred EEcccchhh------hhcccc-cCCeEEEEecccc--cCCCHHH------HHHHHHHHHHhcCCCCEEEEeccCCCCHH
Confidence 999987321 011100 1124444433322 1222221 24677888999999999998665555443
No 105
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.54 E-value=2.4e-07 Score=104.38 Aligned_cols=103 Identities=12% Similarity=0.278 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-C----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-I----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+..+||||||+|.++..+|...| ...++|||+++ + ..+.++.++++|+... ...+.. +
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l------l~~~~~---~ 191 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL------LELLPS---N 191 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh------hhhCCC---C
Confidence 467999999999999999999986 67999999985 2 1467899999998642 122333 6
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||.|+++.+. .|....... -.....|..+.++|+|||.|.+.+
T Consensus 192 s~D~I~lnFPd----PW~KkrHRR-lv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPV----PWDKKPHRR-VISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCC----Cccccchhh-ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 78999987531 243221111 123567889999999999998844
No 106
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.54 E-value=7.8e-07 Score=94.85 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-C-------CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-P-------IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-~-------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++.+|||+|||+|..+..++.. + ...|+|||+++.. . ..++. +.... ... ...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~----------~~~-~~~ 179 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVE----LNVYL----------PQG-DLK 179 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEE----------ccC-CCC
Confidence 457899999999999988877664 3 3469999999832 1 11220 00000 000 025
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVE 180 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~ 180 (832)
||+|+++... + .....+..+.++|+|||+|++.-+.......+...+..+ |.-+.
T Consensus 180 fD~Vvani~~--------~------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 180 ADVIVANILA--------N------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred cCEEEEcCcH--------H------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEE
Confidence 7999997421 1 123456778999999999999766666666777777765 54443
No 107
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.53 E-value=2.7e-07 Score=99.83 Aligned_cols=182 Identities=20% Similarity=0.247 Sum_probs=108.7
Q ss_pred HHHHHHhcCchhHHHHHHHhhhhhcC---------CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----
Q 003302 13 YYRLAKEHGYRSRASWKLVQLDSKFS---------FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---- 79 (832)
Q Consensus 13 yy~~Ake~gyrsRaafKLiqi~~kf~---------fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---- 79 (832)
+|..-.+.|+-.|..-+++.+-.--+ +.+++..++|||||-||=+.-.-. ..-+.+||+||+...
T Consensus 79 HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~k--AgI~~~igiDIAevSI~qa 156 (389)
T KOG1975|consen 79 HYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDK--AGIGEYIGIDIAEVSINQA 156 (389)
T ss_pred HHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhh--hcccceEeeehhhccHHHH
Confidence 34445567766666555555422111 236899999999999996543322 234589999998632
Q ss_pred --------C-----CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHH
Q 003302 80 --------P-----IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLAT 146 (832)
Q Consensus 80 --------~-----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~ 146 (832)
. +-.+.|+.+|.+.... ...+.. +..+||+|-|-.++++. |...+-...+|+.++
T Consensus 157 ~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l----~d~~e~-~dp~fDivScQF~~HYa-------Fetee~ar~~l~Nva 224 (389)
T KOG1975|consen 157 RKRYRDMKNRFKKFIFTAVFIAADCFKERL----MDLLEF-KDPRFDIVSCQFAFHYA-------FETEESARIALRNVA 224 (389)
T ss_pred HHHHHHHHhhhhcccceeEEEEeccchhHH----HHhccC-CCCCcceeeeeeeEeee-------eccHHHHHHHHHHHH
Confidence 1 1236789999987543 333321 11348999998765432 222233567899999
Q ss_pred hhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccchhhhcccC
Q 003302 147 QFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDVKYLFQGS 221 (832)
Q Consensus 147 ~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp~~vf~~~ 221 (832)
.+|+|||.||-.+ ++-..|+|.|+.. .+. + -.-++|-|--.-..+...+.-++-..|.|.-.
T Consensus 225 ~~LkpGG~FIgTi---Pdsd~Ii~rlr~~--e~~-------~-~gNdiykv~y~~~~~k~~~~p~fG~kY~F~Le 286 (389)
T KOG1975|consen 225 KCLKPGGVFIGTI---PDSDVIIKRLRAG--EVE-------R-FGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLE 286 (389)
T ss_pred hhcCCCcEEEEec---CcHHHHHHHHHhc--cch-------h-hcceeeeEeeeeecccccCCCCccceEEEEcc
Confidence 9999999999855 3446678888765 211 1 12245544444333333343444456666544
No 108
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.51 E-value=3.4e-07 Score=99.58 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=65.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++ +|||||||+|.++..++.. +..|+|||+++.. .+ ++.+..+|+.... +
T Consensus 119 ~~~~-~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~--------~---- 181 (287)
T PRK12335 119 VKPG-KALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS--------I---- 181 (287)
T ss_pred cCCC-CEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc--------c----
Confidence 4444 8999999999999999875 4699999999721 12 5777788876532 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.||+|++.+... +.. ......+++.+.++|+|||++++
T Consensus 182 ~~~fD~I~~~~vl~----~l~-----~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 QEEYDFILSTVVLM----FLN-----RERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred cCCccEEEEcchhh----hCC-----HHHHHHHHHHHHHhcCCCcEEEE
Confidence 16789999976421 111 11234677889999999999766
No 109
>PRK05785 hypothetical protein; Provisional
Probab=98.50 E-value=1.8e-07 Score=98.44 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCCC--CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAPI--RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
.++.+|||||||||.++..++... ++.|+|||+++ |... ....++++|+.+.+ +.+ ++||+|++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp--------~~d---~sfD~v~~ 116 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADDKVVGSFEALP--------FRD---KSFDVVMS 116 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccceEEechhhCC--------CCC---CCEEEEEe
Confidence 457899999999999999998875 46999999998 4321 12345778877643 112 77899999
Q ss_pred CCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC
Q 003302 118 DGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK 152 (832)
Q Consensus 118 Dgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG 152 (832)
.... +|..+ ...+|+.+.++|+|+
T Consensus 117 ~~~l----~~~~d-------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFAL----HASDN-------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred cChh----hccCC-------HHHHHHHHHHHhcCc
Confidence 7532 22222 246788999999994
No 110
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=5.8e-07 Score=97.88 Aligned_cols=131 Identities=24% Similarity=0.311 Sum_probs=80.9
Q ss_pred cCchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CCCCceE---E-
Q 003302 20 HGYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PIRGAVS---L- 87 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i~~V~~---i- 87 (832)
+|+..-....|-.+.+ ++++|.+|||+|||+|.++.+++.. + ...|+|+|+.|+. ...+|.. .
T Consensus 143 TG~HpTT~lcL~~Le~---~~~~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 143 TGTHPTTSLCLEALEK---LLKKGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217 (300)
T ss_pred CCCChhHHHHHHHHHH---hhcCCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcc
Confidence 4444444444333322 2458999999999999999988876 3 4579999999853 1233331 1
Q ss_pred EccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE-EcCCCCHH
Q 003302 88 EQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK-VFRSQDYS 166 (832)
Q Consensus 88 ~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K-VFrs~d~~ 166 (832)
..+... ... .++||+|+||-- ...+......+..+|+|||+|+++ |+..+ ..
T Consensus 218 ~~~~~~---------~~~---~~~~DvIVANIL--------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q-~~ 270 (300)
T COG2264 218 GFLLLE---------VPE---NGPFDVIVANIL--------------AEVLVELAPDIKRLLKPGGRLILSGILEDQ-AE 270 (300)
T ss_pred cccchh---------hcc---cCcccEEEehhh--------------HHHHHHHHHHHHHHcCCCceEEEEeehHhH-HH
Confidence 111111 011 158899999831 111234556788999999999997 44444 56
Q ss_pred HHHHHH-HHcccceEEe
Q 003302 167 SVLYCL-KQLFEKVEVD 182 (832)
Q Consensus 167 ~ll~~L-~~~F~~V~~~ 182 (832)
.+...+ ++-|.-+.+.
T Consensus 271 ~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 271 SVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHhCCCeEeEEE
Confidence 666666 4457666554
No 111
>PHA03411 putative methyltransferase; Provisional
Probab=98.49 E-value=4.4e-07 Score=97.77 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=92.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
.+.+|||||||+|.++..++.+.+ ...|+|||+++. . ..+++.++++|+.+.. .. ..||+|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~---------~~---~kFDlI 130 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE---------SN---EKFDVV 130 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc---------cc---CCCcEE
Confidence 356899999999999998888764 468999999982 1 3567899999987632 11 568999
Q ss_pred EeCCCCCCCCCch-hHHhHH-------hHH-HHHHHHHHHhhcccCcEEEEEEcCCC-------CHHHHHHHHHHc-ccc
Q 003302 116 LHDGSPNVGGAWA-QEAMSQ-------NAL-VIDSVKLATQFLAPKGTFVTKVFRSQ-------DYSSVLYCLKQL-FEK 178 (832)
Q Consensus 116 lsDgapnv~g~w~-~D~~~q-------~~L-~~~aLk~A~~~LkpGG~fV~KVFrs~-------d~~~ll~~L~~~-F~~ 178 (832)
++|++......-. .+.+.. ..| +...+..+..+|+|+|.+.+. +.+. .-..+..++.+. |.-
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-EeccccccccCCHHHHHHHHHhcCcEe
Confidence 9998754322111 111111 011 345667778899999988774 4332 223444444433 210
Q ss_pred -----e--EEecCCCCCCCCcceeEEEeeccCCCC
Q 003302 179 -----V--EVDKPAASRSASAEIYLLGIKYKAPAK 206 (832)
Q Consensus 179 -----V--~~~KP~sSR~~SaEiyvVc~gfk~p~~ 206 (832)
| .++.. ..+.++.-.=|||..|..+..
T Consensus 210 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PHA03411 210 YAGCGIDTSIYRD-EWHSTNVLTEVVEVRYYEKEA 243 (279)
T ss_pred cCCCCcccceehh-hccCCCccceEEEEEeccccc
Confidence 1 11111 123445556689999987654
No 112
>PLN03075 nicotianamine synthase; Provisional
Probab=98.49 E-value=5e-07 Score=98.48 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEeCCCCC------------CC-CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 42 SSHAVLDLCAAPGGWM-QVAVQRVPVGSLVLGLDLVPIA------------PI-RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~s-q~La~~~p~~~~ViGVDLsp~~------------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
++.+|+|+|||||+++ .+++....+++.++|+|+++-. .+ .++.|.++|+.+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----------- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE----------- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----------
Confidence 6689999999999864 4455455567899999999721 12 359999999986310
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC---CCHHHHHHHHHHcccceEEecC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS---QDYSSVLYCLKQLFEKVEVDKP 184 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs---~d~~~ll~~L~~~F~~V~~~KP 184 (832)
..+.||+|+++.. . .|.... ...+|..+.+.|+|||.|++-...+ .-|..+....-..|+...++.|
T Consensus 192 ~l~~FDlVF~~AL-i---~~dk~~------k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P 261 (296)
T PLN03075 192 SLKEYDVVFLAAL-V---GMDKEE------KVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHP 261 (296)
T ss_pred ccCCcCEEEEecc-c---cccccc------HHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECC
Confidence 0167899999832 1 122111 1356778899999999999854211 1122221112236888888888
Q ss_pred CCCCCCCcceeEEEeec
Q 003302 185 AASRSASAEIYLLGIKY 201 (832)
Q Consensus 185 ~sSR~~SaEiyvVc~gf 201 (832)
... ..++-+|+-+.++
T Consensus 262 ~~~-v~Nsvi~~r~~~~ 277 (296)
T PLN03075 262 TDE-VINSVIIARKPGG 277 (296)
T ss_pred CCC-ceeeEEEEEeecC
Confidence 444 5666666655553
No 113
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.47 E-value=1.2e-06 Score=90.89 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=67.8
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+.++.+|||+|||+|.++..++...+ ++.|+|||+++ +. ..+++.++++|+.++ +.. +.|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~---------~~~---~sf 106 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDP---------FKD---NFF 106 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCC---------CCC---CCE
Confidence 356778999999999999999988765 57999999997 21 256788889998762 112 678
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|+|++++... +..+ ..+..+++.+.+++ +|.+++..
T Consensus 107 D~V~~~~vL~---hl~p------~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 107 DLVLTKGVLI---HINP------DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEEEECChhh---hCCH------HHHHHHHHHHHhhc--CcEEEEEE
Confidence 9999986421 1111 12346677777776 45555543
No 114
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.46 E-value=1.9e-07 Score=97.97 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CCCCce--EEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PIRGAV--SLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i~~V~--~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+|.+|||+|||-|.+++.+|+. +..|+|+|+++.. ...++. +.+..+.+ +.... ++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed----------l~~~~-~~ 124 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED----------LASAG-GQ 124 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHH----------HHhcC-CC
Confidence 7889999999999999999986 5799999999731 112232 33333222 11111 68
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
||+|+|.- ..+|+.. ....++.|..+|+|||.++++..
T Consensus 125 FDvV~cmE--------VlEHv~d---p~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 125 FDVVTCME--------VLEHVPD---PESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ccEEEEhh--------HHHccCC---HHHHHHHHHHHcCCCcEEEEecc
Confidence 99999953 2333322 24577889999999999998654
No 115
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.45 E-value=9.8e-07 Score=107.17 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC--CceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR--GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~--~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.+|.+|||||||+|+++.+++.. + ...|++||+++. +.+. ++.++++|+.+.. .. + .
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l-----~~-~-~- 606 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL-----KE-A-R- 606 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH-----HH-c-C-
Confidence 35789999999999999999875 2 347999999962 1232 5889999986521 11 1 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..||+|++|++....+....+.+........++..+.++|+|||+|++..
T Consensus 607 --~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 607 --EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred --CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 57899999986433221101111112223456778899999999998743
No 116
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.44 E-value=7.8e-07 Score=98.46 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=67.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++++.+|||+|||+|.++..+++.++..+.|+|||+++- ..+.++.++++|+.... ..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~---------~~-- 146 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV---------PE-- 146 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc---------cc--
Confidence 467899999999999999999998875678999999972 13457888899875421 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.+.||+|+++++. ... ...+.+.|+|||.+++.+
T Consensus 147 ~~~fD~Ii~~~g~-----~~i------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGV-----DEV------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCch-----HHh------------HHHHHHhcCCCCEEEEEe
Confidence 1468999997531 111 112467899999998844
No 117
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.44 E-value=2.3e-07 Score=84.07 Aligned_cols=88 Identities=18% Similarity=0.297 Sum_probs=49.2
Q ss_pred EEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCC----------CCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 47 LDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAP----------IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 47 LDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~----------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
||+|||+|.++..+....+ ...|+|+|+++ +.. ..+...+..+..+.. .....+.||+|
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF---------DYDPPESFDLV 70 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS------------CCC----SEE
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh---------hccccccccee
Confidence 7999999999999999885 67999999998 321 112233333333311 00011478999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEE
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTF 155 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~f 155 (832)
++.... +|.. -...+++.+.++|+|||+|
T Consensus 71 ~~~~vl----~~l~-------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 71 VASNVL----HHLE-------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEE-TT----S--S--------HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhH----hhhh-------hHHHHHHHHHHHcCCCCCC
Confidence 997542 2221 1346788999999999986
No 118
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.38 E-value=1.1e-06 Score=96.19 Aligned_cols=111 Identities=21% Similarity=0.273 Sum_probs=72.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
..+|.+|||+|||+|..+.+++.. + ..+|+|+|++|.. .+.....+. ...+. .
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~~~~-------------~ 222 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LSEDL-------------V 222 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CTSCT-------------C
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Eeccc-------------c
Confidence 467889999999999999888876 3 4589999999852 222211121 11110 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVE 180 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~ 180 (832)
.++||+|++|-- . ..+...+.....+|+|||+||++=+.......+...+.+.|.-+.
T Consensus 223 ~~~~dlvvANI~--------~------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~ 280 (295)
T PF06325_consen 223 EGKFDLVVANIL--------A------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVE 280 (295)
T ss_dssp CS-EEEEEEES---------H------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEE
T ss_pred cccCCEEEECCC--------H------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEE
Confidence 177899999842 1 112345556788999999999987666666777777766555443
No 119
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.38 E-value=8.1e-07 Score=95.73 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCcCH----HHHHHHHhCCC----CCEEEEEeCCCC-C-----C---------C-----------------
Q 003302 42 SSHAVLDLCAAPGG----WMQVAVQRVPV----GSLVLGLDLVPI-A-----P---------I----------------- 81 (832)
Q Consensus 42 ~g~~VLDLGcGPGg----~sq~La~~~p~----~~~ViGVDLsp~-~-----~---------i----------------- 81 (832)
++.+|+|+|||+|. ++..++...+. +..|+|+|+++- . . +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45789999999995 55566665542 468999999962 1 1 1
Q ss_pred ------CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEE
Q 003302 82 ------RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTF 155 (832)
Q Consensus 82 ------~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~f 155 (832)
..|.|.++|+.++.. +.+.||+|+|.... ++ + .......++..+.++|+|||+|
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-----------~~~~fD~I~crnvl----~y----f-~~~~~~~~l~~l~~~L~pGG~L 238 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-----------PLGDFDLIFCRNVL----IY----F-DEPTQRKLLNRFAEALKPGGYL 238 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-----------ccCCCCEEEechhH----Hh----C-CHHHHHHHHHHHHHHhCCCeEE
Confidence 147788888887531 12678999995321 11 1 1123457888999999999999
Q ss_pred EE
Q 003302 156 VT 157 (832)
Q Consensus 156 V~ 157 (832)
++
T Consensus 239 ~l 240 (264)
T smart00138 239 FL 240 (264)
T ss_pred EE
Confidence 97
No 120
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.38 E-value=6.4e-07 Score=92.09 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 38 SFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 38 ~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.++++ .++||||||.|.-+.+||.. +..|+|+|+++.. .--.|.+.+.|+.+.. +.
T Consensus 27 ~~~~~-g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~--------~~-- 92 (192)
T PF03848_consen 27 PLLKP-GKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD--------FP-- 92 (192)
T ss_dssp TTS-S-SEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS---------T--
T ss_pred hhcCC-CcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc--------cc--
Confidence 34554 58999999999999999987 6799999999731 1113788899998753 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
..||+|++...++ +-+..+...++......|+|||.+++.+|
T Consensus 93 --~~yD~I~st~v~~---------fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 93 --EEYDFIVSTVVFM---------FLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp --TTEEEEEEESSGG---------GS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --CCcCEEEEEEEec---------cCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 5689999865322 11112234556677889999999988554
No 121
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.37 E-value=1.4e-06 Score=91.10 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CC---------------CCceEEEccCCChhHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PI---------------RGAVSLEQDITKPECR 97 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i---------------~~V~~i~gDIt~~~~~ 97 (832)
.++.+|||+|||.|..+.+|+.+ +..|+|||+++.. .+ .+|+++++|++++...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 57789999999999999999975 6789999999731 11 2477889999875310
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
..+.||+|+..+... ++. ..+....+..+.++|+|||++++..|
T Consensus 110 ----------~~~~fD~i~D~~~~~--------~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 110 ----------DLGPVDAVYDRAALI--------ALP-EEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred ----------cCCCcCEEEechhhc--------cCC-HHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 115689998765321 110 12234567788999999998776554
No 122
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.37 E-value=1.5e-06 Score=88.91 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=73.1
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++||.+|||||||.|.+..+|.... +..++|||+++.. --.++.++++|+.+- + ..+.+ .+||.
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~g-----L-~~f~d---~sFD~ 78 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSVIQGDLDEG-----L-ADFPD---QSFDY 78 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCEEECCHHHh-----H-hhCCC---CCccE
Confidence 57899999999999999999998874 5689999999842 235788999999762 1 12333 78899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHH
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVL 169 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll 169 (832)
|+..-+ .++. .-...+|. ++|+=|...|+ .|+.+.|....
T Consensus 79 VIlsqt--------LQ~~---~~P~~vL~---EmlRVgr~~IV-sFPNFg~W~~R 118 (193)
T PF07021_consen 79 VILSQT--------LQAV---RRPDEVLE---EMLRVGRRAIV-SFPNFGHWRNR 118 (193)
T ss_pred EehHhH--------HHhH---hHHHHHHH---HHHHhcCeEEE-EecChHHHHHH
Confidence 998532 2222 22233444 45666777777 78887655443
No 123
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.36 E-value=2.7e-06 Score=92.60 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CC--CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------AP--IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.|.+||||+|-||||+.+++.- ....|++||++.- +. ...+.++++|+.+.- .. +..
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l-----~~-~~~-- 192 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL-----KR-LKK-- 192 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH-----HH-HHH--
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH-----HH-Hhc--
Confidence 5789999999999999988753 2347999999951 22 346889999987632 11 221
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC-CHHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ-DYSSVLYCLKQ 174 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~-d~~~ll~~L~~ 174 (832)
.++||+|++||+....+.+.... -...++..|..+|+|||.++++...+. +...++..+..
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~~-----~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLER-----DYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAE 254 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHHH-----HHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHH-----HHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence 16899999999755545444321 123567789999999999987554332 33444555544
No 124
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.35 E-value=9.5e-07 Score=88.98 Aligned_cols=130 Identities=21% Similarity=0.246 Sum_probs=83.1
Q ss_pred cCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHH
Q 003302 37 FSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 37 f~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L 104 (832)
|.+-....+|||||||.|.+..-|++.- -.+..+|||.++-+ ..++ |.|-|.||+++..
T Consensus 62 ~rv~~~A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~-------- 132 (227)
T KOG1271|consen 62 SRVSKQADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF-------- 132 (227)
T ss_pred hhhcccccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc--------
Confidence 4433445699999999999998887763 35679999999621 2455 8899999999632
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEEe
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEVD 182 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~~ 182 (832)
..+.||+|+--|....-+. +++.... .+ ..-+.....+|+|||+||| +-...+...|...+... |..+..+
T Consensus 133 ---~~~qfdlvlDKGT~DAisL-s~d~~~~-r~-~~Y~d~v~~ll~~~gifvI-tSCN~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 133 ---LSGQFDLVLDKGTLDAISL-SPDGPVG-RL-VVYLDSVEKLLSPGGIFVI-TSCNFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred ---cccceeEEeecCceeeeec-CCCCccc-ce-eeehhhHhhccCCCcEEEE-EecCccHHHHHHHHhcCCeEEEEee
Confidence 2267898887663221100 0010000 00 1113356789999999998 45667777888777765 6555444
No 125
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.35 E-value=1.3e-06 Score=90.43 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..++... +.|+|||+++-. .+.++.++++|+.... . .
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------~--~ 141 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW---------P--A 141 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC---------C--c
Confidence 4678999999999999998888764 389999999621 2456888899875421 1 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.++||+|++++++. +. ...+...|+|||.|++-+.
T Consensus 142 ~~~fD~I~~~~~~~----~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAP----EI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCch----hh-------------hHHHHHhcCCCcEEEEEEc
Confidence 16789999986421 11 1234678999999998654
No 126
>PLN02366 spermidine synthase
Probab=98.35 E-value=5e-06 Score=91.59 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
....+||+||||.|+.+..++++ +....|+.|||++.. + -|++.++.+|.... +.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~---------l~ 159 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF---------LK 159 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH---------Hh
Confidence 45689999999999999988876 434689999999721 1 25688888886542 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE---c-CCCCHHHHHHHHHHcc-cceE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV---F-RSQDYSSVLYCLKQLF-EKVE 180 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV---F-rs~d~~~ll~~L~~~F-~~V~ 180 (832)
....+.||+|++|.....+.. ..+ .....+..+.+.|+|||.|++-. | ....+..++..|+..| ..|.
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~~---~~L----~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~ 232 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGPA---QEL----FEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVN 232 (308)
T ss_pred hccCCCCCEEEEcCCCCCCch---hhh----hHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCcee
Confidence 111257899999974322111 001 12456678899999999998732 2 2223455667777888 4553
Q ss_pred Ee-cCCCCCCCCcceeEEEee
Q 003302 181 VD-KPAASRSASAEIYLLGIK 200 (832)
Q Consensus 181 ~~-KP~sSR~~SaEiyvVc~g 200 (832)
.+ -..-+-+...-.|++|-.
T Consensus 233 ~~~~~vPsy~~g~w~f~~as~ 253 (308)
T PLN02366 233 YAWTTVPTYPSGVIGFVLCSK 253 (308)
T ss_pred EEEecCCCcCCCceEEEEEEC
Confidence 32 123334434456777743
No 127
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.35 E-value=1.3e-06 Score=92.68 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC--CCceEEE-ccCCChhHHHHHHHHHhhcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI--RGAVSLE-QDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i--~~V~~i~-gDIt~~~~~~~l~~~L~~~~ 108 (832)
|+.|||+|||.|-+++.|++. +..|+|||+++.. |. .+|.+.. .+.++.. ..
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E-----------~~ 155 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVE-----------GL 155 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchh-----------hc
Confidence 488999999999999999987 5799999999621 21 1222221 2222211 11
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
++.||.|+|-. ..+|.. .....+..+...|+|||.+++..
T Consensus 156 ~~~fDaVvcse--------vleHV~---dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 156 TGKFDAVVCSE--------VLEHVK---DPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred ccccceeeeHH--------HHHHHh---CHHHHHHHHHHHhCCCCceEeee
Confidence 26689999953 233332 23456677889999999998843
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=98.35 E-value=5.6e-06 Score=92.50 Aligned_cols=143 Identities=12% Similarity=0.021 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----CC-------------CCCceEEEccCCChhHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----AP-------------IRGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----~~-------------i~~V~~i~gDIt~~~~~~~l~~ 102 (832)
....+||+||||.|+.+..++++. ....|++||+++. .. .|++.++.+|....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-------- 219 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-------- 219 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH--------
Confidence 345799999999999888777653 3569999999972 11 24677788887642
Q ss_pred HHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHH----HHHHHHHcccc
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSS----VLYCLKQLFEK 178 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~----ll~~L~~~F~~ 178 (832)
+.. ..+.||+|++|.+ +..+..... ......+..+.+.|+|||.||+-.-.+..... +...|...|..
T Consensus 220 -L~~-~~~~YDVIIvDl~-DP~~~~~~~-----LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~ 291 (374)
T PRK01581 220 -LSS-PSSLYDVIIIDFP-DPATELLST-----LYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLT 291 (374)
T ss_pred -HHh-cCCCccEEEEcCC-Cccccchhh-----hhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCc
Confidence 111 1257899999963 211110111 11245677899999999999985332322222 33445555665
Q ss_pred eEEecCCCCCCCCcceeEEEee
Q 003302 179 VEVDKPAASRSASAEIYLLGIK 200 (832)
Q Consensus 179 V~~~KP~sSR~~SaEiyvVc~g 200 (832)
+..+.-.-+-.++.-.|++|..
T Consensus 292 v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 292 VKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred eEEEEEecCCCCCceEEEEEeC
Confidence 5543322212233466777743
No 129
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.34 E-value=1.5e-06 Score=75.93 Aligned_cols=92 Identities=23% Similarity=0.299 Sum_probs=66.2
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+|||+|||+|.++..++. .....++|+|+++.. ....+.++++|+.+... . ..+.||
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~d 68 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------E---ADESFD 68 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------c---cCCceE
Confidence 489999999999988887 246799999998621 12457888888876432 1 125689
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+|++++.... + .......+..+..+|+|||.|++.
T Consensus 69 ~i~~~~~~~~---~-------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 69 VIISDPPLHH---L-------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEEccceee---h-------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999875321 1 122346677888999999999874
No 130
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.34 E-value=3.2e-06 Score=95.56 Aligned_cols=121 Identities=26% Similarity=0.241 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCC--CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------API--RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.|.+||||+|-||+|+.+++.. ..+.||+||++.- +.+ ..+.++++|+... +......
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~-----l~~~~~~-- 287 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW-----LRKAERR-- 287 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH-----HHHHHhc--
Confidence 3899999999999999999864 2349999999952 223 2367888887653 2222221
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc-CCCCHHHHHHHHH
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF-RSQDYSSVLYCLK 173 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF-rs~d~~~ll~~L~ 173 (832)
-..||+|+.||+-..-+... . +....-....+..|.++|+|||+++++.- +......++.++.
T Consensus 288 g~~fDlIilDPPsF~r~k~~-~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQ-E-FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred CCcccEEEECCcccccCccc-c-hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHH
Confidence 14789999998533221110 0 11112234667789999999999998553 3334344444433
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.33 E-value=3.4e-07 Score=95.44 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+++|++|||+|||+|.++.+|+...+..+.|++||+.+-. .+.+|.++++|..... . .
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~---------~--~ 138 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW---------P--E 138 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT---------G--G
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc---------c--c
Confidence 6899999999999999999999998877899999998721 3568999999976421 1 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.++||+|++.++.. ... ......|++||++|+=+
T Consensus 139 ~apfD~I~v~~a~~-----~ip------------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVP-----EIP------------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBS-----S--------------HHHHHTEEEEEEEEEEE
T ss_pred CCCcCEEEEeeccc-----hHH------------HHHHHhcCCCcEEEEEE
Confidence 26899999987521 111 12457899999999833
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.31 E-value=1.5e-06 Score=87.01 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++.+|||||||+|.++..++.+ .+.|+|||+++. . ..+++.++++|+..... .. ..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~--------~~---~~ 77 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDL--------PK---LQ 77 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCc--------cc---cC
Confidence 56789999999999999999987 468999999972 1 23578899999987531 11 34
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc-------C--CCCHHHHHHHHHHcccceEEe
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF-------R--SQDYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF-------r--s~d~~~ll~~L~~~F~~V~~~ 182 (832)
||+|++|.+.+.. ..++..++.. ..+.++|+|++..- . +..| ..+.++.++|..++..
T Consensus 78 ~d~vi~n~Py~~~----------~~~i~~~l~~--~~~~~~~~l~~q~e~a~rl~~~~~~~~y-~~lsv~~~~~~~~~~~ 144 (169)
T smart00650 78 PYKVVGNLPYNIS----------TPILFKLLEE--PPAFRDAVLMVQKEVARRLAAKPGSKDY-GRLSVLLQPYFDVKIL 144 (169)
T ss_pred CCEEEECCCcccH----------HHHHHHHHhc--CCCcceEEEEEEHHHhHHhcCCCCCCcc-cHHHHHHHHHeeEEEE
Confidence 7999999764321 1222233322 23558899887421 1 1344 3455666666666654
No 133
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.30 E-value=1.7e-06 Score=94.71 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=69.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||+|||+|.++..+++..| +..++++|+.++. .+ .+|.++.+|+.+.. +
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--------~---- 213 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES--------Y---- 213 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC--------C----
Confidence 46778999999999999999999987 5799999985332 12 35889999987532 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
..+|+|++..... .|..+ .+..+|+.+.+.|+|||+|++.
T Consensus 214 -~~~D~v~~~~~lh---~~~~~------~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 -PEADAVLFCRILY---SANEQ------LSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred -CCCCEEEeEhhhh---cCChH------HHHHHHHHHHHhcCCCCEEEEE
Confidence 2359887653211 23222 2356788999999999999885
No 134
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.29 E-value=1.6e-06 Score=100.55 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
++.+|||||||+|.++..++... ..|+|||+++. . ..+++.++++|+...... + +.+.|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~------~---~~~~f 104 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN------I---SDGSV 104 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC------C---CCCCE
Confidence 56799999999999999999873 48999999972 1 135688999998653210 1 12678
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+|+++.+.. |..+ ..+..++..+.++|+|||+|++.
T Consensus 105 D~I~~~~~l~----~l~~-----~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 105 DLIFSNWLLM----YLSD-----KEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EEEehhhhHH----hCCH-----HHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999986421 1111 11346778899999999999885
No 135
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.28 E-value=9.2e-07 Score=92.13 Aligned_cols=118 Identities=20% Similarity=0.314 Sum_probs=82.0
Q ss_pred CchhHHHH--HHHh-hhhhcC--CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC--CC-------CCCCceE
Q 003302 21 GYRSRASW--KLVQ-LDSKFS--FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP--IA-------PIRGAVS 86 (832)
Q Consensus 21 gyrsRaaf--KLiq-i~~kf~--fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp--~~-------~i~~V~~ 86 (832)
+||-+..| ||.- |..-.. .+.+|..||-||+++|....+++..+++.|.|+||+.+| +. ..+||..
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiP 126 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIP 126 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEE
T ss_pred ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceee
Confidence 56666555 4443 222222 368999999999999999999999999899999999997 22 2479999
Q ss_pred EEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 87 LEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 87 i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.+|.+.|.....+ .+.+|+|++|.+- ++. ...++..|..+|++||.|++.+
T Consensus 127 Il~DAr~P~~Y~~l--------v~~VDvI~~DVaQ-------p~Q------a~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 127 ILEDARHPEKYRML--------VEMVDVIFQDVAQ-------PDQ------ARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EES-TTSGGGGTTT--------S--EEEEEEE-SS-------TTH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeccCCChHHhhcc--------cccccEEEecCCC-------hHH------HHHHHHHHHhhccCCcEEEEEE
Confidence 99999998754322 2677999999651 121 2345668889999999999855
No 136
>PLN02672 methionine S-methyltransferase
Probab=98.27 E-value=3.7e-06 Score=104.98 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=84.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC----------------CCceEEEccCCChh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI----------------RGAVSLEQDITKPE 95 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i----------------~~V~~i~gDIt~~~ 95 (832)
+.+|||||||+|.++..++..++ .+.|+|||+++.. .+ .+|.++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999999876 4699999999721 11 25889999987631
Q ss_pred HHHHHHHHHhhccCCcccEEEeCCCCCCCCCc------h--hH------------H-------hHHhHHHHHHHHHHHhh
Q 003302 96 CRARVKKVMEEHGVRAFDLVLHDGSPNVGGAW------A--QE------------A-------MSQNALVIDSVKLATQF 148 (832)
Q Consensus 96 ~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w------~--~D------------~-------~~q~~L~~~aLk~A~~~ 148 (832)
... ...||+|+||++.-..+.+ + ++ + ...+.+...++..+..+
T Consensus 198 ---------~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~ 267 (1082)
T PLN02672 198 ---------RDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISV 267 (1082)
T ss_pred ---------ccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHh
Confidence 110 0358999999852211111 0 00 0 11234557788899999
Q ss_pred cccCcEEEEEEcCCCCHHHHH-HHHHHc-ccceEEe
Q 003302 149 LAPKGTFVTKVFRSQDYSSVL-YCLKQL-FEKVEVD 182 (832)
Q Consensus 149 LkpGG~fV~KVFrs~d~~~ll-~~L~~~-F~~V~~~ 182 (832)
|+|||++++.+-..+. ..+. .+|... |..+.++
T Consensus 268 L~pgG~l~lEiG~~q~-~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 268 IKPMGIMIFNMGGRPG-QAVCERLFERRGFRITKLW 302 (1082)
T ss_pred ccCCCEEEEEECccHH-HHHHHHHHHHCCCCeeEEe
Confidence 9999999997754433 3455 355543 6555444
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.23 E-value=5.9e-06 Score=87.58 Aligned_cols=98 Identities=10% Similarity=0.170 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.-+..++..++.+++|++||+++-. .+ .++.++++|+.+. +........
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-----L~~l~~~~~ 141 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-----LDQLLNNDP 141 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-----HHHHHhCCC
Confidence 467899999999999888888888888899999999721 22 3578899998652 111111111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.||+|+.|+.. ..+ ...+..+.++|+|||.+++
T Consensus 142 ~~~fD~VfiDa~k--------~~y------~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 142 KPEFDFAFVDADK--------PNY------VHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCEEEECCCH--------HHH------HHHHHHHHHhcCCCeEEEE
Confidence 2578999999742 112 1345567899999999986
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.22 E-value=1.1e-05 Score=87.28 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
.+.+||+||||.|+++..++.+.+ ...|++||+++.. ..+++.++.+|.... + ..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-----l----~~ 141 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-----L----AD 141 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-----H----Hh
Confidence 456999999999999988877643 4689999999621 124566666665431 1 11
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC----CHHHHHHHHHHcccceEEe
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ----DYSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~----d~~~ll~~L~~~F~~V~~~ 182 (832)
. .++||+|++|.+...+.... -.....+..+.+.|+|||.|++..-.+. .+..+...++..|..|..+
T Consensus 142 ~-~~~yDvIi~D~~~~~~~~~~-------l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~ 213 (270)
T TIGR00417 142 T-ENTFDVIIVDSTDPVGPAET-------LFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYY 213 (270)
T ss_pred C-CCCccEEEEeCCCCCCcccc-------hhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEE
Confidence 1 16789999997522211110 0124566788899999999998522111 1334455677789888765
Q ss_pred cC-CCCCCCCcceeEEEee
Q 003302 183 KP-AASRSASAEIYLLGIK 200 (832)
Q Consensus 183 KP-~sSR~~SaEiyvVc~g 200 (832)
.. ..+.+...-.|++|..
T Consensus 214 ~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 214 TANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred EEEcCccccchhEEEEEEC
Confidence 43 3333344457888865
No 139
>PRK06202 hypothetical protein; Provisional
Probab=98.19 E-value=3.2e-06 Score=88.77 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhC---CCCCEEEEEeCCC-CC-------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRV---PVGSLVLGLDLVP-IA-------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~---p~~~~ViGVDLsp-~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++... +++..|+|||+++ |. ..+++.+.+++..... .. .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~--------~~---~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELV--------AE---G 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccc--------cc---C
Confidence 456799999999999998887653 3346899999997 21 1245666666554422 11 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
+.||+|+++... +|..+.. ...+|+.+.++++ |+.++..+.++
T Consensus 128 ~~fD~V~~~~~l----hh~~d~~-----~~~~l~~~~r~~~-~~~~i~dl~~~ 170 (232)
T PRK06202 128 ERFDVVTSNHFL----HHLDDAE-----VVRLLADSAALAR-RLVLHNDLIRS 170 (232)
T ss_pred CCccEEEECCee----ecCChHH-----HHHHHHHHHHhcC-eeEEEeccccC
Confidence 678999998642 2332321 2357788888887 44544434444
No 140
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.18 E-value=2.2e-06 Score=95.23 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------------CC----CCceEEEccCCChhHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------------PI----RGAVSLEQDITKPECRARV 100 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------------~i----~~V~~i~gDIt~~~~~~~l 100 (832)
++..|||||||-||-+.-.... .-..++|+|++... .. -.+.++.+|.+... |
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~----l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSES----L 135 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSH----H
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccch----h
Confidence 7899999999999965544443 24699999999521 01 13567888888754 3
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
...+... ...||+|.|-.+.++. +....-....|..+...|+|||.||..+..+
T Consensus 136 ~~~~~~~-~~~FDvVScQFalHY~-------Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 136 REKLPPR-SRKFDVVSCQFALHYA-------FESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp HCTSSST-TS-EEEEEEES-GGGG-------GSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred hhhcccc-CCCcceeehHHHHHHh-------cCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 3333321 2589999998764332 2333445678999999999999999866443
No 141
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.16 E-value=6.4e-06 Score=91.04 Aligned_cols=138 Identities=20% Similarity=0.207 Sum_probs=91.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEc-cCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQ-DITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~g-DIt~~~~~~~l~~~L~~~ 107 (832)
+++|..|||=-|||||+...+.- + ++.++|+|++. |. .+....++.. |++.++ |..
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--------l~~- 262 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--------LRD- 262 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--------CCC-
Confidence 47899999999999999876654 3 67999999985 21 1344445555 888865 222
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAAS 187 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sS 187 (832)
.+||.|++|++...+...... ....|...+|..+.++|++||++|+-.+ ....-+...-.|.-+..+.-...
T Consensus 263 --~~vdaIatDPPYGrst~~~~~--~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~~~~~~~f~v~~~~~~~~H 334 (347)
T COG1041 263 --NSVDAIATDPPYGRSTKIKGE--GLDELYEEALESASEVLKPGGRIVFAAP----RDPRHELEELGFKVLGRFTMRVH 334 (347)
T ss_pred --CccceEEecCCCCcccccccc--cHHHHHHHHHHHHHHHhhcCcEEEEecC----CcchhhHhhcCceEEEEEEEeec
Confidence 357999999863322211111 1246778999999999999999988544 23344556666777776644444
Q ss_pred CCCCcceeEE
Q 003302 188 RSASAEIYLL 197 (832)
Q Consensus 188 R~~SaEiyvV 197 (832)
+.-+..+||+
T Consensus 335 ~sLtR~i~v~ 344 (347)
T COG1041 335 GSLTRVIYVV 344 (347)
T ss_pred CceEEEEEEE
Confidence 4444455544
No 142
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=98.16 E-value=3.7e-05 Score=91.49 Aligned_cols=176 Identities=20% Similarity=0.252 Sum_probs=115.1
Q ss_pred HHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC--------CCC--------C----Cce
Q 003302 26 ASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI--------API--------R----GAV 85 (832)
Q Consensus 26 aafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~--------~~i--------~----~V~ 85 (832)
|-|||--|...+++ .. .-+|-.|=|.||.+.++.+..| .++++=.-|-.+ .|. . +|.
T Consensus 308 AHYKlRsIL~~~~i-~~-~d~l~~GDGSGGita~lLR~~p-~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcv 384 (675)
T PF14314_consen 308 AHYKLRSILKNLNI-KY-RDALCGGDGSGGITACLLRMNP-TSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCV 384 (675)
T ss_pred chhhHHHHHHhcCC-Cc-ceeEEEecCchHHHHHHHHhCc-ccceeeeccccccCCCCCCCCCCCcHHHhccCcccceee
Confidence 45677777666664 22 3467777789999999998887 556665433321 111 1 122
Q ss_pred E------EEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 86 S------LEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 86 ~------i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
. .-.|++++.+-.......... .-.+|+|++|+- +.|..............+..+|.++|++|+|+
T Consensus 385 n~~~~W~~pSDLs~~~TW~YF~~l~~~~-~~~idLiv~DmE-------V~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKT 456 (675)
T PF14314_consen 385 NLDTCWEHPSDLSDPETWKYFVSLKKQH-NLSIDLIVMDME-------VRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKT 456 (675)
T ss_pred cchhhhcCccccCCccHHHHHHHHHhhc-CCcccEEEEece-------ecChHHHHHHHHHHHHHHHHhcCCCcEEEEeh
Confidence 1 235777775554444433322 257899999974 12222222222334456778999999999998
Q ss_pred cCCC--CH-HHHHHHHHHcccceEEecCCCCCCCCcceeEEEeeccCCCCCCCCccch
Q 003302 160 FRSQ--DY-SSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKIDPRLLDV 214 (832)
Q Consensus 160 Frs~--d~-~~ll~~L~~~F~~V~~~KP~sSR~~SaEiyvVc~gfk~p~~id~~~ldp 214 (832)
|-+. .. ..++..+..+|..|.++.+..|=.-++|+|+||++++... +..+++-
T Consensus 457 Ylt~l~~~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~--~~~~~~~ 512 (675)
T PF14314_consen 457 YLTRLLSPDYNILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP--DRPYVDW 512 (675)
T ss_pred hHhhhhcchhhHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC--CcCCCCH
Confidence 8542 22 2578889999999999999998889999999999998754 4444443
No 143
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.16 E-value=6.9e-06 Score=85.88 Aligned_cols=121 Identities=18% Similarity=0.196 Sum_probs=88.4
Q ss_pred CchhHHHH--HHHh-hhhh--cCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceE
Q 003302 21 GYRSRASW--KLVQ-LDSK--FSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVS 86 (832)
Q Consensus 21 gyrsRaaf--KLiq-i~~k--f~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~ 86 (832)
.||-+..| ||.- |.-- --+++||..||=|||+.|.-..+++..+++.+.|++|+.++.. ..+||+.
T Consensus 130 EyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiP 209 (317)
T KOG1596|consen 130 EYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIP 209 (317)
T ss_pred EEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCcee
Confidence 46666666 3432 1111 1146899999999999999999999999999999999999742 3478999
Q ss_pred EEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 87 LEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 87 i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
+..|.+.+.-+.++. +-+|+|++|.++ +|... .+.-.|..||++||.||+.+..+
T Consensus 210 IiEDArhP~KYRmlV--------gmVDvIFaDvaq-------pdq~R------ivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 210 IIEDARHPAKYRMLV--------GMVDVIFADVAQ-------PDQAR------IVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred eeccCCCchheeeee--------eeEEEEeccCCC-------chhhh------hhhhhhhhhhccCCeEEEEEecc
Confidence 999999876443332 566999999763 23222 22336889999999999987643
No 144
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.14 E-value=5.3e-06 Score=87.09 Aligned_cols=95 Identities=16% Similarity=0.089 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CC---------------CCceEEEccCCChhHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PI---------------RGAVSLEQDITKPECR 97 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i---------------~~V~~i~gDIt~~~~~ 97 (832)
.++.+|||+|||.|.-+.+|+.+ +..|+|||+++.. .+ ..|+++++|+.++...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 46789999999999999999975 6799999999731 11 2477889999875311
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..+.||+|+--+... ++ ........+..+.++|+|||++++
T Consensus 113 ----------~~~~fd~v~D~~~~~--------~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 ----------DLADVDAVYDRAALI--------AL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ----------cCCCeeEEEehHhHh--------hC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 125689998654211 11 112235667788999999997544
No 145
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.13 E-value=1.8e-05 Score=82.39 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++.. +..|+|||+++. . .. .++.+.++|+.+..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------------- 117 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------------- 117 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-------------
Confidence 45789999999999999999875 458999999972 1 11 36788888887631
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..||+|++..... ++.. .....++..+.+++++|+.+.+
T Consensus 118 -~~fD~ii~~~~l~---~~~~------~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 -GEFDIVVCMDVLI---HYPA------SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -CCcCEEEEhhHHH---hCCH------HHHHHHHHHHHHHhCCCEEEEE
Confidence 5679999853210 1111 1123456667777776655543
No 146
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.12 E-value=2.8e-05 Score=80.69 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+|||||||+|.++..++.. ...|+|+|+++-. .+.++.+.++|+..... . ..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~-~~~ 111 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---------K-GAK 111 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---------C-CCC
Confidence 4789999999999999988875 3469999998621 12246677777654221 1 115
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.||+|++..... +.. -...+|..+.++|+|||.+++..+.
T Consensus 112 ~~D~i~~~~~l~--------~~~---~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 112 SFDVVTCMEVLE--------HVP---DPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CccEEEehhHHH--------hCC---CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 789999864311 111 1235677888999999999886543
No 147
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.10 E-value=2.1e-05 Score=82.18 Aligned_cols=122 Identities=24% Similarity=0.300 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-------CCC------CCceEEEccCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-------API------RGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-------~~i------~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.|.+|||.|.|=|..+..++.+- ..+|+.|+.+|. +|. ..+.++.||+.. +...+.+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e------~V~~~~D- 203 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE------VVKDFDD- 203 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH------HHhcCCc-
Confidence 358999999999999998888762 338999988873 232 246788888765 2233444
Q ss_pred cCCcccEEEeCCCCC-CCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE------cCCCC-HHHHHHHHHHc-ccc
Q 003302 108 GVRAFDLVLHDGSPN-VGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV------FRSQD-YSSVLYCLKQL-FEK 178 (832)
Q Consensus 108 ~~~~FDlVlsDgapn-v~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV------Frs~d-~~~ll~~L~~~-F~~ 178 (832)
.+||+|+||++-. ..| .-| .+...+..+++|+|||.++-=+ +|+.+ +..++..|++. |..
T Consensus 204 --~sfDaIiHDPPRfS~Ag----eLY-----seefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 204 --ESFDAIIHDPPRFSLAG----ELY-----SEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred --cccceEeeCCCccchhh----hHh-----HHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence 6789999998521 111 111 1345567889999999998533 33333 34566777766 876
Q ss_pred eEEe
Q 003302 179 VEVD 182 (832)
Q Consensus 179 V~~~ 182 (832)
|...
T Consensus 273 v~~~ 276 (287)
T COG2521 273 VKKV 276 (287)
T ss_pred eeee
Confidence 6654
No 148
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.10 E-value=1.3e-05 Score=83.87 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.++.+|||||||+|.++..++.. ++.|+|+|+++.. ....+.++.+|+..... .. .+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~ 113 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA-------EH---PG 113 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh-------hc---CC
Confidence 36789999999999999888875 4589999999631 01135566666654210 01 16
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.||+|++...... ..+ ...+|..+.++|+|||+|++..+.
T Consensus 114 ~fD~Ii~~~~l~~----~~~-------~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 114 QFDVVTCMEMLEH----VPD-------PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CccEEEEhhHhhc----cCC-------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 7899998643211 111 134577889999999999986553
No 149
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.08 E-value=3e-05 Score=80.36 Aligned_cols=126 Identities=22% Similarity=0.280 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
.++.+|.|+|||-+.+++.+ +....|...||.+..+ . ++.+||...+. .+ +.+|+|++.-+
T Consensus 71 ~~~~viaD~GCGdA~la~~~----~~~~~V~SfDLva~n~--~--Vtacdia~vPL--------~~---~svDv~VfcLS 131 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV----PNKHKVHSFDLVAPNP--R--VTACDIANVPL--------ED---ESVDVAVFCLS 131 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH------S---EEEEESS-SST--T--EEES-TTS-S----------T---T-EEEEEEES-
T ss_pred CCCEEEEECCCchHHHHHhc----ccCceEEEeeccCCCC--C--EEEecCccCcC--------CC---CceeEEEEEhh
Confidence 45679999999999877544 3345799999998754 3 46799988663 33 66799998876
Q ss_pred CCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC--CCHHHHHHHHHHc-ccceEEecCCCCCCCCcceeEE
Q 003302 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS--QDYSSVLYCLKQL-FEKVEVDKPAASRSASAEIYLL 197 (832)
Q Consensus 121 pnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs--~d~~~ll~~L~~~-F~~V~~~KP~sSR~~SaEiyvV 197 (832)
. +|..| ...|.+|.++|+|||.|.|---.+ .+...++..+..+ |..+.. ..+.-.|++
T Consensus 132 L-MGTn~-----------~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~-------d~~n~~F~~ 192 (219)
T PF05148_consen 132 L-MGTNW-----------PDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSK-------DESNKHFVL 192 (219)
T ss_dssp ---SS-H-----------HHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE-------E--STTEEE
T ss_pred h-hCCCc-----------HHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEec-------ccCCCeEEE
Confidence 4 23333 245679999999999998843333 3567777888776 544432 123347888
Q ss_pred EeeccCC
Q 003302 198 GIKYKAP 204 (832)
Q Consensus 198 c~gfk~p 204 (832)
+...+..
T Consensus 193 f~F~K~~ 199 (219)
T PF05148_consen 193 FEFKKIR 199 (219)
T ss_dssp EEEEE-S
T ss_pred EEEEEcC
Confidence 7777665
No 150
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.08 E-value=2e-05 Score=81.74 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++.+|||||||+|.++..++.+. ...|++||+++-. .+.++.++++|+... + .. ..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~-----l----~~-~~ 119 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF-----L----AQ-PG 119 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-----H----hh-cC
Confidence 356799999999999998654443 3589999999621 244688888887532 1 11 11
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
..||+|++||+... +. . ..+..+|.. ..+|.|+|.+++.....
T Consensus 120 ~~fDlV~~DPPy~~-g~-~-------~~~l~~l~~-~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 120 TPHNVVFVDPPFRK-GL-L-------EETINLLED-NGWLADEALIYVESEVE 162 (199)
T ss_pred CCceEEEECCCCCC-Ch-H-------HHHHHHHHH-CCCcCCCcEEEEEecCC
Confidence 46899999986322 11 1 112233322 35689999999865443
No 151
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.3e-05 Score=85.16 Aligned_cols=112 Identities=15% Similarity=0.203 Sum_probs=79.8
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.+|.+|||.|+|+|.++.+|+..+++.++|+.+|+.+-. .+.+ |++..+|+++.. ..
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~---------~~- 161 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI---------DE- 161 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc---------cc-
Confidence 5789999999999999999999988888999999998621 2333 788889988742 11
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccce
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKV 179 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V 179 (832)
..||+|+.|.+ ..| .+|..+..+|+|||.+++-+-.......+...|..+ |..+
T Consensus 162 --~~vDav~LDmp----~PW------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 162 --EDVDAVFLDLP----DPW------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred --cccCEEEEcCC----ChH------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccch
Confidence 46799999974 112 345678899999999987332222233344455544 5544
No 152
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.05 E-value=5.1e-05 Score=83.16 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+|..+||++||.||.+..++..+++.+.|+|+|.++.. ...++.++++|+.+.. ..+.. ...
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~------~~l~~-~~~ 89 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLK------EVLAE-GLG 89 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHH------HHHHc-CCC
Confidence 3678899999999999999999998777899999999731 1246889999988743 22322 123
Q ss_pred cccEEEeCC
Q 003302 111 AFDLVLHDG 119 (832)
Q Consensus 111 ~FDlVlsDg 119 (832)
.||.|+.|.
T Consensus 90 ~vDgIl~DL 98 (296)
T PRK00050 90 KVDGILLDL 98 (296)
T ss_pred ccCEEEECC
Confidence 679999985
No 153
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.04 E-value=1.6e-05 Score=82.17 Aligned_cols=104 Identities=13% Similarity=0.293 Sum_probs=68.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
...+||+|||.|.|+..+|...| +..++|||+... ..++|+.++++|+... +...+.. ++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-----l~~~~~~---~~ 88 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-----LRRLFPP---GS 88 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-----HHHHSTT---TS
T ss_pred CCeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-----HhhcccC---Cc
Confidence 34899999999999999999987 689999999852 1578999999999873 2233433 56
Q ss_pred ccEEEeCCCCCCCCCchhHHh-HHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAM-SQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~-~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+|-|..+-+ + -|..... ...-+....|....++|+|||.|.+.+
T Consensus 89 v~~i~i~FP-D---PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 89 VDRIYINFP-D---PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp EEEEEEES---------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hheEEEeCC-C---CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 688877643 1 1322111 111112455678899999999997743
No 154
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=2.7e-05 Score=79.38 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------C----CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------P----IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.|..|+|||||||.++..++-+ + .+.|+|||+.|-. + .-+|.++.+|+++.. +.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~--------------~~ 108 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR--------------GK 108 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC--------------Cc
Confidence 5788999999999998877655 3 4699999999731 1 225899999999853 67
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHH
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCL 172 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L 172 (832)
||+|+.||++. .|.. +.. ...+..+|..+ .+|.+++......-+....
T Consensus 109 ~dtvimNPPFG---~~~r-haD-r~Fl~~Ale~s--------~vVYsiH~a~~~~f~~~~~ 156 (198)
T COG2263 109 FDTVIMNPPFG---SQRR-HAD-RPFLLKALEIS--------DVVYSIHKAGSRDFVEKFA 156 (198)
T ss_pred cceEEECCCCc---cccc-cCC-HHHHHHHHHhh--------heEEEeeccccHHHHHHHH
Confidence 79999998754 3311 111 12334555444 5667788777544333333
No 155
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=6.7e-06 Score=84.49 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=77.6
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCce-EEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAV-SLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~-~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.||++|||||.--.+.-. .+...|+++|.++ |. ..+++. |+.++..+++- |.+ +++
T Consensus 79 ~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~-------l~d---~s~ 146 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ-------LAD---GSY 146 (252)
T ss_pred ceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc-------ccc---CCe
Confidence 479999999986544322 1578999999997 32 234666 77887776431 223 677
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccc
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEK 178 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~ 178 (832)
|+|++-... . -+.+ ...+|....++|+|||.+++--+-...|.-+..+++++++.
T Consensus 147 DtVV~TlvL--C--Sve~-------~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 147 DTVVCTLVL--C--SVED-------PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred eeEEEEEEE--e--ccCC-------HHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhch
Confidence 999985310 1 1122 24678899999999999998777776777778888887765
No 156
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=3.2e-05 Score=82.50 Aligned_cols=140 Identities=18% Similarity=0.210 Sum_probs=84.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEE----EccCCChhHHHHHHHHHhh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSL----EQDITKPECRARVKKVMEE 106 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i----~gDIt~~~~~~~l~~~L~~ 106 (832)
+..+||||||+|+++..++..+| .+.|+|||+++.+ .+.| +..+ ++|...+.. +.
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-------l~- 219 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP-------LL- 219 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc-------cc-
Confidence 44799999999999999999998 7899999999732 1223 3333 334433210 11
Q ss_pred ccCCcccEEEeCCCCCCCCCch---------hHHh-------HHhHHHHHHHHHHHhhcccCcEEEEEEcC-CCC-HHHH
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWA---------QEAM-------SQNALVIDSVKLATQFLAPKGTFVTKVFR-SQD-YSSV 168 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~---------~D~~-------~q~~L~~~aLk~A~~~LkpGG~fV~KVFr-s~d-~~~l 168 (832)
.+..|+++||++ .+...-. .+.. .........+..|+++|+|||.+.+.+-. ... +-.-
T Consensus 220 --~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~ 296 (328)
T KOG2904|consen 220 --EGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVR 296 (328)
T ss_pred --cCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHH
Confidence 267799999984 2211100 0000 01122345677899999999999986542 222 2211
Q ss_pred HHH---HHHcccceEEecCCCCCCCCcceeEEE
Q 003302 169 LYC---LKQLFEKVEVDKPAASRSASAEIYLLG 198 (832)
Q Consensus 169 l~~---L~~~F~~V~~~KP~sSR~~SaEiyvVc 198 (832)
.|+ +.-+|..+.++...+.|+ +||+.
T Consensus 297 ~~m~s~~~d~~~~~~v~~Df~~~~----Rfv~i 325 (328)
T KOG2904|consen 297 IWMISLKDDSNGKAAVVSDFAGRP----RFVII 325 (328)
T ss_pred HHHHhchhhccchhheeecccCCc----ceEEE
Confidence 222 223466677766666664 56554
No 157
>PLN02476 O-methyltransferase
Probab=98.02 E-value=2.5e-05 Score=84.73 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+||++|+|+|..+.+++..+|.++.|+++|.++.. .+ ..|.++.+|+... |........
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-----L~~l~~~~~ 191 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-----LKSMIQNGE 191 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-----HHHHHhccc
Confidence 457899999999999999999999888899999999731 23 3588888987642 222111111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.||+|+.|+.. ..+ ...+..+..+|+|||.+|+
T Consensus 192 ~~~FD~VFIDa~K--------~~Y------~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 192 GSSYDFAFVDADK--------RMY------QDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCCCEEEECCCH--------HHH------HHHHHHHHHhcCCCcEEEE
Confidence 2579999999742 112 2345667899999999997
No 158
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=6.6e-05 Score=76.00 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=94.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CCC--CceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PIR--GAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i~--~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
...|+++|||+|..+..|+....+++..+++|++|.+ ... ++..++.|+.+- +.. +++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~---------l~~---~~V 111 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG---------LRN---ESV 111 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh---------hcc---CCc
Confidence 4679999999999999999999889999999999853 112 345666666541 222 566
Q ss_pred cEEEeCCCCCCCC------CchhHHhH----HhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHc-ccceEE
Q 003302 113 DLVLHDGSPNVGG------AWAQEAMS----QNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQL-FEKVEV 181 (832)
Q Consensus 113 DlVlsDgapnv~g------~w~~D~~~----q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~-F~~V~~ 181 (832)
|+++.|++..... .|.-.++. ....+...+...-.+|.|.|+|.+-..+.....+++..++.. |....+
T Consensus 112 DvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 112 DVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred cEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 9999998532211 11111111 112345666777889999999999777777778888877765 433222
Q ss_pred ecCCCCCCCCcceeEEEeec
Q 003302 182 DKPAASRSASAEIYLLGIKY 201 (832)
Q Consensus 182 ~KP~sSR~~SaEiyvVc~gf 201 (832)
-.|....|...|...+
T Consensus 192 ----~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 192 ----MQRKAGGETLSILKFT 207 (209)
T ss_pred ----EEEecCCceEEEEEEE
Confidence 3455555666665544
No 159
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.01 E-value=1.5e-05 Score=86.82 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=61.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-C--CCceEEE-ccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-I--RGAVSLE-QDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-i--~~V~~i~-gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|.+|||+|||.|.++..++..- ...|+|||.++.. . + ....+.. .-+.+ +.. .
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~----------Lp~--~ 180 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED----------LPN--L 180 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh----------ccc--c
Confidence 58899999999999999988773 3489999998742 1 1 1111111 11222 111 2
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+.||+|+|-|-.. +-.++ ...|..+...|+|||.+|+.+
T Consensus 181 ~~FDtVF~MGVLY----Hrr~P-------l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 181 GAFDTVFSMGVLY----HRRSP-------LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CCcCEEEEeeehh----ccCCH-------HHHHHHHHHhhCCCCEEEEEE
Confidence 6799999977422 12222 356677889999999999754
No 160
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.99 E-value=4e-05 Score=81.93 Aligned_cols=132 Identities=19% Similarity=0.278 Sum_probs=81.4
Q ss_pred chhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCC-CceEEEc
Q 003302 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIR-GAVSLEQ 89 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~-~V~~i~g 89 (832)
|..=+++-+..++ +.||.+||+.|+|+|+++.+|++.+++.++|+.+|+..- ..+. +|++.+.
T Consensus 25 YpkD~~~I~~~l~-----i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~ 99 (247)
T PF08704_consen 25 YPKDISYILMRLD-----IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHR 99 (247)
T ss_dssp -HHHHHHHHHHTT-------TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred eCchHHHHHHHcC-----CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEec
Confidence 4444555555432 689999999999999999999999988999999999852 1243 6888999
Q ss_pred cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhc-ccCcEEEEEEcCCCCHHHH
Q 003302 90 DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFL-APKGTFVTKVFRSQDYSSV 168 (832)
Q Consensus 90 DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~L-kpGG~fV~KVFrs~d~~~l 168 (832)
|+..... .......||.|+.|.+ .-|. ++..+..+| +|||.|++-+-.-.....+
T Consensus 100 Dv~~~g~--------~~~~~~~~DavfLDlp----~Pw~------------~i~~~~~~L~~~gG~i~~fsP~ieQv~~~ 155 (247)
T PF08704_consen 100 DVCEEGF--------DEELESDFDAVFLDLP----DPWE------------AIPHAKRALKKPGGRICCFSPCIEQVQKT 155 (247)
T ss_dssp -GGCG----------STT-TTSEEEEEEESS----SGGG------------GHHHHHHHE-EEEEEEEEEESSHHHHHHH
T ss_pred ceecccc--------cccccCcccEEEEeCC----CHHH------------HHHHHHHHHhcCCceEEEECCCHHHHHHH
Confidence 9976431 1000156799999974 1232 345678899 8999998632221122233
Q ss_pred HHHHHHc-ccceEEe
Q 003302 169 LYCLKQL-FEKVEVD 182 (832)
Q Consensus 169 l~~L~~~-F~~V~~~ 182 (832)
+..|+.+ |..|.++
T Consensus 156 ~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 156 VEALREHGFTDIETV 170 (247)
T ss_dssp HHHHHHTTEEEEEEE
T ss_pred HHHHHHCCCeeeEEE
Confidence 4445543 6666543
No 161
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.94 E-value=6.4e-05 Score=86.81 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++... ..|+|||+++- ..+.++.++++|+.... . . ..+..
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-~-~--~~~~~-- 365 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-T-D--QPWAL-- 365 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh-h-h--hhhhc--
Confidence 3577899999999999999999873 58999999972 13457899999986421 0 0 00111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..||+|++|++- . |.+ ..+. ++.-|+|++.++++.
T Consensus 366 -~~fD~Vi~dPPr-~-g~~------------~~~~-~l~~~~~~~ivyvSC 400 (443)
T PRK13168 366 -GGFDKVLLDPPR-A-GAA------------EVMQ-ALAKLGPKRIVYVSC 400 (443)
T ss_pred -CCCCEEEECcCC-c-ChH------------HHHH-HHHhcCCCeEEEEEe
Confidence 468999999752 1 211 1121 222368988877754
No 162
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=2.8e-05 Score=80.78 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
++++.+||++|||+|.-+-++++..+ +|+.|++.+- ..+.||.++++|-..- |+
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G------------~~ 134 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG------------WP 134 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC------------CC
Confidence 57899999999999999999999853 9999999862 1466899999998762 22
Q ss_pred -CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 -VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 -~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.++||.|+..++... .++ ...+.|++||++|+=|
T Consensus 135 ~~aPyD~I~Vtaaa~~----vP~-------------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 135 EEAPYDRIIVTAAAPE----VPE-------------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCcCEEEEeeccCC----CCH-------------HHHHhcccCCEEEEEE
Confidence 278999999886331 111 2357899999999844
No 163
>PRK03612 spermidine synthase; Provisional
Probab=97.94 E-value=3.2e-05 Score=91.04 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----C-------------CCCceEEEccCCChhHHHHHHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----P-------------IRGAVSLEQDITKPECRARVKK 102 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----~-------------i~~V~~i~gDIt~~~~~~~l~~ 102 (832)
++..+|||||||+|+++..++++ +...+|++||+++.. . .|++.++.+|....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-------- 366 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-------- 366 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH--------
Confidence 45679999999999999888875 433699999998620 1 15677888887542
Q ss_pred HHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc----CCCCHHHHHHHHHHc-c
Q 003302 103 VMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF----RSQDYSSVLYCLKQL-F 176 (832)
Q Consensus 103 ~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF----rs~d~~~ll~~L~~~-F 176 (832)
+... ..+||+|++|.+... ...... -.....++.+.+.|+|||.|++... +...+..+...+++. |
T Consensus 367 -l~~~-~~~fDvIi~D~~~~~----~~~~~~--L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 367 -LRKL-AEKFDVIIVDLPDPS----NPALGK--LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred -HHhC-CCCCCEEEEeCCCCC----Ccchhc--cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 1111 157899999964211 110000 0113456778899999999998532 222344555666666 6
No 164
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.94 E-value=1.7e-05 Score=81.20 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C---CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A---PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
++.++.+|||+|||+|.++..++... ...++|||+++- . ...++.++++|+.+.. . .+.. ++||+
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l-----~-~~~~---~sfD~ 78 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGL-----E-AFPD---KSFDY 78 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcc-----c-ccCC---CCcCE
Confidence 35678899999999999999887654 347899999972 1 2346788888876410 0 0111 57899
Q ss_pred EEeCCC
Q 003302 115 VLHDGS 120 (832)
Q Consensus 115 VlsDga 120 (832)
|+++.+
T Consensus 79 Vi~~~~ 84 (194)
T TIGR02081 79 VILSQT 84 (194)
T ss_pred EEEhhH
Confidence 999864
No 165
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.92 E-value=1.9e-05 Score=82.25 Aligned_cols=98 Identities=15% Similarity=0.256 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+..+||++||+.|.-+.+++..+|.+++|+.||+++-. .+ ..|.++.+|..+. +.........
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~-----l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV-----LPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH-----HHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh-----HHHHHhccCC
Confidence 46799999999999999999999989999999999721 22 3588889887642 2222222223
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+.||+|+.|+.. ..+ ...+..+..+|+|||.+|+-
T Consensus 120 ~~fD~VFiDa~K--------~~y------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 120 GQFDFVFIDADK--------RNY------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TSEEEEEEESTG--------GGH------HHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEcccc--------cch------hhHHHHHhhhccCCeEEEEc
Confidence 689999999742 112 12344567899999999983
No 166
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.87 E-value=2.9e-05 Score=83.38 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=52.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC--------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.++.+|||+|||+|.++..++.. ...|+|||+++ +. ..+++.++++|+..... .
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~-------------~ 90 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL-------------P 90 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc-------------h
Confidence 357889999999999999999987 35899999996 21 24578999999986431 3
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.||+|++|.+.+
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 469999998654
No 167
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.83 E-value=0.00013 Score=80.70 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||||||+|.++..++.. +..|+|||+++- ..+.++.++++|+.+.. . .. .+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~-----~-~~----~~ 239 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA-----T-AQ----GE 239 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH-----H-hc----CC
Confidence 4689999999999999999984 468999999962 13457899999986531 0 01 14
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.||+|++|++
T Consensus 240 ~~D~Vv~dPP 249 (315)
T PRK03522 240 VPDLVLVNPP 249 (315)
T ss_pred CCeEEEECCC
Confidence 5899999975
No 168
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.83 E-value=6.5e-05 Score=78.14 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CC-CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PI-RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++.+|||+|||+|.++..++.. +..|+|+|+++ +. .. .++.++++|+...
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------------- 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-------------- 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--------------
Confidence 46789999999999999999876 34799999986 21 12 3578888885321
Q ss_pred CCcccEEEeCCC
Q 003302 109 VRAFDLVLHDGS 120 (832)
Q Consensus 109 ~~~FDlVlsDga 120 (832)
.+.||+|++...
T Consensus 125 ~~~fD~v~~~~~ 136 (230)
T PRK07580 125 LGRFDTVVCLDV 136 (230)
T ss_pred cCCcCEEEEcch
Confidence 166899998653
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.83 E-value=0.0002 Score=79.47 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=90.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------C-CC-CceEEE-ccCCChhHHHHHHHHHhhc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------P-IR-GAVSLE-QDITKPECRARVKKVMEEH 107 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~-i~-~V~~i~-gDIt~~~~~~~l~~~L~~~ 107 (832)
.+.+|||||||+|++...++...+ +..|+|+|+++.. + +. .|.+++ .|..+. +...+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i-----~~~i~~-- 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI-----FKGIIH-- 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh-----hhcccc--
Confidence 457899999999999888887765 6799999999731 1 22 244433 332221 011111
Q ss_pred cCCcccEEEeCCCCCCCCCc----hhHHhH-----------------H---------hHHHHHHHHHHHhhcccCcEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAW----AQEAMS-----------------Q---------NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w----~~D~~~-----------------q---------~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..+.||+|+||+++..+..- ...... . ..++...+..+..++...|+|.+
T Consensus 186 ~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwfts 265 (321)
T PRK11727 186 KNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTS 265 (321)
T ss_pred cCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEE
Confidence 12578999999975543321 000000 0 02234556677777788888887
Q ss_pred EEcCCCCHHHHHHHHHHc-ccceEEecCCCCCCCCcceeEEEeeccC
Q 003302 158 KVFRSQDYSSVLYCLKQL-FEKVEVDKPAASRSASAEIYLLGIKYKA 203 (832)
Q Consensus 158 KVFrs~d~~~ll~~L~~~-F~~V~~~KP~sSR~~SaEiyvVc~gfk~ 203 (832)
.+-...+...+...|..+ +..+.++........ ..+||=.|..
T Consensus 266 mv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~~---~~~vaWsf~~ 309 (321)
T PRK11727 266 LVSKKENLPPLYRALKKVGAVEVKTIEMAQGQKQ---SRFIAWTFLD 309 (321)
T ss_pred EeeccCCHHHHHHHHHHcCCceEEEEEEeCCCee---eEEEEeecCC
Confidence 666666777888888765 445666654443332 3456666654
No 170
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.82 E-value=8.1e-05 Score=82.36 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-------C--------CCCceEEEccCCChhHHHHHHHHHh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-------P--------IRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-------~--------i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
++.+|||||||+|.++..++.. +..|+|+|+++ |. . ..++.+.++|+...
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------- 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------- 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----------
Confidence 5789999999999999999875 46899999997 31 1 12356677776432
Q ss_pred hccCCcccEEEeCC
Q 003302 106 EHGVRAFDLVLHDG 119 (832)
Q Consensus 106 ~~~~~~FDlVlsDg 119 (832)
. +.||+|+|..
T Consensus 210 ~---~~fD~Vv~~~ 220 (315)
T PLN02585 210 S---GKYDTVTCLD 220 (315)
T ss_pred C---CCcCEEEEcC
Confidence 1 6789999864
No 171
>PLN02823 spermine synthase
Probab=97.78 E-value=0.00022 Score=79.56 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-------CCCceEEEccCCChhHHHHHHHHHhh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-------IRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-------i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
...+||-||+|.|+.+..+.++.+ ...|+.|||++.. + -|++.++.+|.... + ..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-----L----~~ 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-----L----EK 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-----H----hh
Confidence 457899999999999988877544 4689999999721 1 25688888887642 2 11
Q ss_pred ccCCcccEEEeCCC-CCCCCCchhHHhHHhHHHHHHHH-HHHhhcccCcEEEEEEcCC------CCHHHHHHHHHHcccc
Q 003302 107 HGVRAFDLVLHDGS-PNVGGAWAQEAMSQNALVIDSVK-LATQFLAPKGTFVTKVFRS------QDYSSVLYCLKQLFEK 178 (832)
Q Consensus 107 ~~~~~FDlVlsDga-pnv~g~w~~D~~~q~~L~~~aLk-~A~~~LkpGG~fV~KVFrs------~d~~~ll~~L~~~F~~ 178 (832)
....||+|++|.. |..++. ..++. ....+. .+.+.|+|||.||+-.-.. ..+..+...|.+.|..
T Consensus 173 -~~~~yDvIi~D~~dp~~~~~--~~~Ly----t~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~ 245 (336)
T PLN02823 173 -RDEKFDVIIGDLADPVEGGP--CYQLY----TKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKY 245 (336)
T ss_pred -CCCCccEEEecCCCccccCc--chhhc----cHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCC
Confidence 1267899999963 111111 00010 123455 6789999999999853221 1234566778888988
Q ss_pred eEEecC-CCCCCCCcceeEEEee
Q 003302 179 VEVDKP-AASRSASAEIYLLGIK 200 (832)
Q Consensus 179 V~~~KP-~sSR~~SaEiyvVc~g 200 (832)
|..+.- ..|- .+.-.|++|-.
T Consensus 246 v~~y~~~vPsf-~~~w~f~~aS~ 267 (336)
T PLN02823 246 VVPYTAHVPSF-ADTWGWVMASD 267 (336)
T ss_pred EEEEEeecCCC-CCceEEEEEeC
Confidence 877642 2222 23356777643
No 172
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00015 Score=74.65 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC--CC-------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP--IA-------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp--~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+|.+||=|||++|.-..|++.-++ .+.|+||+.+| +. .-+|+..+.+|.+.+.....+. .
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~V--------e 144 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLV--------E 144 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhc--------c
Confidence 57899999999999999999999998 78999999997 21 3578999999999987654332 5
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.+|+|++|.+- + .| ..-+...|..||++||.+++.
T Consensus 145 ~VDviy~DVAQ-------p---~Q---a~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 145 KVDVIYQDVAQ-------P---NQ---AEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cccEEEEecCC-------c---hH---HHHHHHHHHHhcccCCeEEEE
Confidence 56999999751 1 12 133566889999999977653
No 173
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.76 E-value=0.0001 Score=76.62 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=79.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCCC---CC--ceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAPI---RG--AVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~i---~~--V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
+.-|||+|||+|--+.++..- +..++|||+|| |..+ .. -.++.+|+-.. ++- ..++||-||
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~G---------lpf-rpGtFDg~I 117 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELEGDLILCDMGEG---------LPF-RPGTFDGVI 117 (270)
T ss_pred CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCC---------CCC-CCCccceEE
Confidence 567999999999988888764 56899999998 5321 11 23456665432 111 238999999
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHH----HHHHccc-ceEEecCCCCCCC
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLY----CLKQLFE-KVEVDKPAASRSA 190 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~----~L~~~F~-~V~~~KP~sSR~~ 190 (832)
+-.|..+-.+-+........-+...+...+.+|++|+.+|+..+.... ..+-- .+..-|. -+.+--|-+.|+.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~-~q~d~i~~~a~~aGF~GGlvVd~Pes~k~k 195 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE-AQIDMIMQQAMKAGFGGGLVVDWPESTKNK 195 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch-HHHHHHHHHHHhhccCCceeeecccccccc
Confidence 988753221100000000111345667788999999999996665433 33222 2233344 4455456666654
No 174
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.75 E-value=0.00011 Score=75.50 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+|||||||+|+++..++.+. ...|++||+++-. .+. ++.++++|+... +...... .
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-----l~~~~~~--~ 119 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-----LKFLAKK--P 119 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-----HHHhhcc--C
Confidence 57899999999999999998873 3489999999621 222 477888887542 1111111 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
..||+|+.||+... .+... +...+ .-..+|.+||.+|+...+
T Consensus 120 ~~~dvv~~DPPy~~--~~~~~-------~l~~l-~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 120 TFDNVIYLDPPFFN--GALQA-------LLELC-ENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCceEEEECcCCCC--CcHHH-------HHHHH-HHCCCCCCCeEEEEEecC
Confidence 24799999976432 11111 11222 224679999998885443
No 175
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.73 E-value=0.00022 Score=75.68 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
...+|.|+|||-+-+++ . ....|+.+||.+.. -.++.+||++.+. .+ +++|++++..+.
T Consensus 180 ~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a~~----~~V~~cDm~~vPl--------~d---~svDvaV~CLSL 238 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----S--ERHKVHSFDLVAVN----ERVIACDMRNVPL--------ED---ESVDVAVFCLSL 238 (325)
T ss_pred CceEEEecccchhhhhh----c--cccceeeeeeecCC----CceeeccccCCcC--------cc---CcccEEEeeHhh
Confidence 45789999999997655 1 23479999998863 3456889988652 33 667999986553
Q ss_pred CCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC--CCHHHHHHHHHHc-ccceEEecCCCCCCCCcceeEEE
Q 003302 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS--QDYSSVLYCLKQL-FEKVEVDKPAASRSASAEIYLLG 198 (832)
Q Consensus 122 nv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs--~d~~~ll~~L~~~-F~~V~~~KP~sSR~~SaEiyvVc 198 (832)
. |.. +...++.|.++|++||.+.|--..+ .+...+...|..+ |... ++..+...|++.
T Consensus 239 M-gtn-----------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~-------~~d~~n~~F~lf 299 (325)
T KOG3045|consen 239 M-GTN-----------LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK-------HKDVSNKYFTLF 299 (325)
T ss_pred h-ccc-----------HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee-------ehhhhcceEEEE
Confidence 2 222 2356789999999999998854433 2334455555544 5433 334555677777
Q ss_pred eeccCCC
Q 003302 199 IKYKAPA 205 (832)
Q Consensus 199 ~gfk~p~ 205 (832)
..++.|.
T Consensus 300 efkK~~~ 306 (325)
T KOG3045|consen 300 EFKKTPK 306 (325)
T ss_pred EEecCCc
Confidence 7777663
No 176
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.71 E-value=2e-05 Score=82.25 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
-.++||||||||-.+..+.... ..++|||||. |.....- -++.+.-....+...+......+||+|++--
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~e----Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-- 196 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHE----KGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-- 196 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHh----ccchHHHHHHHHHHHhhhccCCcccchhhhh--
Confidence 3689999999999998887763 3799999997 4321110 0111111111111123222237789998632
Q ss_pred CCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 122 nv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
-+.-+.-+..++-.+..+|.|||.|.+++-...+
T Consensus 197 ---------Vl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 197 ---------VLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred ---------HHHhhcchhhHHHHHHHhcCCCceEEEEecccCC
Confidence 1221222355677889999999999998754443
No 177
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.69 E-value=0.00022 Score=72.71 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=71.8
Q ss_pred CchhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCC--------EEEEEeCCCCC-----------CC
Q 003302 21 GYRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGS--------LVLGLDLVPIA-----------PI 81 (832)
Q Consensus 21 gyrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~--------~ViGVDLsp~~-----------~i 81 (832)
..+..-|+-|+.+.. ..++..|||-+||+|++..-++....... .++|+|+++-. .+
T Consensus 11 ~L~~~lA~~ll~la~----~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 11 PLRPTLAAALLNLAG----WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp SS-HHHHHHHHHHTT------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHhC----CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 345666777776532 36788999999999999987766544322 38999999621 22
Q ss_pred C-CceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 82 R-GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 82 ~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
. .+.+.+.|++.+. +.. +.||+|++|++. |...........|....+..+.++|++...++
T Consensus 87 ~~~i~~~~~D~~~l~--------~~~---~~~d~IvtnPPy---G~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 87 EDYIDFIQWDARELP--------LPD---GSVDAIVTNPPY---GRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp CGGEEEEE--GGGGG--------GTT---SBSCEEEEE--S---TTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred CCceEEEecchhhcc--------ccc---CCCCEEEECcch---hhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 2 3677888998864 112 677999999863 33222222334666778889999999933333
No 178
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.69 E-value=0.00012 Score=78.30 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++.+|||+|||+|.++..++...+ .|+|||+++-. ..+++.++++|+...... .
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-------------~ 91 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-------------D 91 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh-------------H
Confidence 5678999999999999999998863 69999999721 136788999999875421 2
Q ss_pred cc---EEEeCCCC
Q 003302 112 FD---LVLHDGSP 121 (832)
Q Consensus 112 FD---lVlsDgap 121 (832)
|| +|++|.+.
T Consensus 92 ~d~~~~vvsNlPy 104 (253)
T TIGR00755 92 FPKQLKVVSNLPY 104 (253)
T ss_pred cCCcceEEEcCCh
Confidence 34 89998753
No 179
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.68 E-value=5.1e-05 Score=77.65 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|.+||||+||+|+++.-++.+- ...|+.||.++-. .+. .+.++.+|.... +..... ..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~-----l~~~~~--~~ 112 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF-----LLKLAK--KG 112 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH-----HHHHHH--CT
T ss_pred CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH-----HHhhcc--cC
Confidence 57899999999999998777762 4699999999631 222 367778876542 111111 12
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
..||+|+.||+... +.+ + ..++..| .-..+|.++|.+|+.....
T Consensus 113 ~~fDiIflDPPY~~-~~~----~---~~~l~~l-~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 113 EKFDIIFLDPPYAK-GLY----Y---EELLELL-AENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp S-EEEEEE--STTS-CHH----H---HHHHHHH-HHTTSEEEEEEEEEEEETT
T ss_pred CCceEEEECCCccc-chH----H---HHHHHHH-HHCCCCCCCEEEEEEecCC
Confidence 67899999975332 111 0 1112222 1248999999999966444
No 180
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.68 E-value=6.2e-05 Score=79.52 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--C---------------------CCCceEEEccCCChhHH
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--P---------------------IRGAVSLEQDITKPECR 97 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--~---------------------i~~V~~i~gDIt~~~~~ 97 (832)
.++.+||..|||.|.-+.+|+.. +..|+|||+++.. . -.+++++++|+.++...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 45689999999999999999886 5689999999631 0 12578899999986421
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
. ...+.||+|+--++... .+. .+....+..+..+|+|||++++.+|
T Consensus 119 ~--------~~~~~fD~VyDra~~~A----lpp-----~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 119 A--------NNLPVFDIWYDRGAYIA----LPN-----DLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred c--------cccCCcCeeeeehhHhc----CCH-----HHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 0 01257899886654211 011 2234556678899999999998665
No 181
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.68 E-value=8.5e-05 Score=81.48 Aligned_cols=69 Identities=19% Similarity=0.368 Sum_probs=53.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------C-CCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------P-IRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.++.+|||+|||+|.++..++.. ...|+|||+++ +. . .+++.++++|+....
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~------------ 98 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE------------ 98 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc------------
Confidence 357889999999999999999886 35899999996 21 1 356899999987532
Q ss_pred cCCcccEEEeCCCCCCC
Q 003302 108 GVRAFDLVLHDGSPNVG 124 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~ 124 (832)
...||+|++|.+.+.+
T Consensus 99 -~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 -FPYFDVCVANVPYQIS 114 (294)
T ss_pred -ccccCEEEecCCcccC
Confidence 1456999999876654
No 182
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.65 E-value=0.00016 Score=72.33 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
..|.-||+||.|+|.++-.+..++-....+++|+.++- ...+++.++.||..++.+. +...+-..||+
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~------l~e~~gq~~D~ 120 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTT------LGEHKGQFFDS 120 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHH------HhhcCCCeeee
Confidence 56778999999999999999988877788999999972 3568888999999885432 33333356899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
|+|-.+.- +..... ....|..+...|.+||.||.-.+.+.+
T Consensus 121 viS~lPll-----~~P~~~----~iaile~~~~rl~~gg~lvqftYgp~s 161 (194)
T COG3963 121 VISGLPLL-----NFPMHR----RIAILESLLYRLPAGGPLVQFTYGPLS 161 (194)
T ss_pred EEeccccc-----cCcHHH----HHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence 99964311 111111 235566778899999999986665443
No 183
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.65 E-value=0.00031 Score=80.75 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=52.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.++.+|||||||+|.++..++... ..|+|||+++- ..+.++.++++|+... +.. +.. .
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~-----l~~-~~~-~ 359 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV-----LPK-QPW-A 359 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH-----HHH-HHh-c
Confidence 3567899999999999999999863 48999999962 1356799999998642 111 110 1
Q ss_pred CCcccEEEeCCC
Q 003302 109 VRAFDLVLHDGS 120 (832)
Q Consensus 109 ~~~FDlVlsDga 120 (832)
...||+|+.|++
T Consensus 360 ~~~~D~vi~dPP 371 (431)
T TIGR00479 360 GQIPDVLLLDPP 371 (431)
T ss_pred CCCCCEEEECcC
Confidence 145899999985
No 184
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.65 E-value=0.00017 Score=75.92 Aligned_cols=99 Identities=21% Similarity=0.210 Sum_probs=66.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C---------------CCCceEEEccCCChhH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P---------------IRGAVSLEQDITKPEC 96 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~---------------i~~V~~i~gDIt~~~~ 96 (832)
..++.+||..|||.|.-+..|+.. +..|+|||+++.. . ..+|+++++|+.++..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 456779999999999999999986 5699999999631 0 1246889999998541
Q ss_pred HHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcE--EEEEEc
Q 003302 97 RARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGT--FVTKVF 160 (832)
Q Consensus 97 ~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~--fV~KVF 160 (832)
...++||+|+=-++... ..+ .+...-...+..+|+|||+ +++..|
T Consensus 112 ----------~~~g~fD~iyDr~~l~A-----lpp----~~R~~Ya~~l~~ll~p~g~~lLi~l~~ 158 (218)
T PF05724_consen 112 ----------EDVGKFDLIYDRTFLCA-----LPP----EMRERYAQQLASLLKPGGRGLLITLEY 158 (218)
T ss_dssp ----------SCHHSEEEEEECSSTTT-----S-G----GGHHHHHHHHHHCEEEEEEEEEEEEES
T ss_pred ----------hhcCCceEEEEeccccc-----CCH----HHHHHHHHHHHHHhCCCCcEEEEEEEc
Confidence 11267899997664321 111 1122344567899999999 555444
No 185
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.63 E-value=0.0003 Score=79.66 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+|||||||+|.++..++.. +..|+|||+++- ..+.++.++++|+.+.. .. + ..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~-----~~-~----~~ 299 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA-----TA-Q----MS 299 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH-----Hh-c----CC
Confidence 4679999999999999988854 468999999972 13457889999986531 00 1 13
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||+|+.||+- . |.. ..++..+ ..++|++.+++..
T Consensus 300 ~~D~vi~DPPr-~-G~~-----------~~~l~~l-~~~~p~~ivyvsc 334 (374)
T TIGR02085 300 APELVLVNPPR-R-GIG-----------KELCDYL-SQMAPKFILYSSC 334 (374)
T ss_pred CCCEEEECCCC-C-CCc-----------HHHHHHH-HhcCCCeEEEEEe
Confidence 57999999753 2 211 1111222 2478988777743
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.57 E-value=0.00034 Score=74.92 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhc-c
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEH-G 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~-~ 108 (832)
+..+||+||++.|.-+.+++..+|++++|++||+++-. .+ ..|.+++||..+ .|....... .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e-----~L~~l~~~~~~ 153 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP-----VLDQMIEDGKY 153 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH-----HHHHHHhcccc
Confidence 56799999999999999999989889999999999721 22 458888888654 122222111 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.++||+|+.|+.. ..+ ...+..+..+|+|||.+|+
T Consensus 154 ~~~fD~iFiDadK--------~~Y------~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 154 HGTFDFIFVDADK--------DNY------INYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CCcccEEEecCCH--------HHh------HHHHHHHHHhcCCCeEEEE
Confidence 1578999999742 222 2334567789999999997
No 187
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.56 E-value=0.00024 Score=75.04 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=69.2
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
+.+..+|||||+|.|.++..++...| +.+++.+|+-... ..++|.++.+|+.++ + + . +|+|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~---------~---P-~-~D~~ 162 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDLPEVIEQAKEADRVEFVPGDFFDP---------L---P-V-ADVY 162 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC---------C---S-S-ESEE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCC-CCcceeeccHhhhhccccccccccccccHHhh---------h---c-c-ccce
Confidence 45667899999999999999999987 6799999996432 256799999999853 1 1 2 7999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccC--cEEEEE
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPK--GTFVTK 158 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpG--G~fV~K 158 (832)
+... +--.|..+ .+..+|+.+...|+|| |++++.
T Consensus 163 ~l~~---vLh~~~d~------~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 163 LLRH---VLHDWSDE------DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEES---SGGGS-HH------HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeeh---hhhhcchH------HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 9853 22224332 3567889999999999 999874
No 188
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.56 E-value=0.00016 Score=79.21 Aligned_cols=110 Identities=17% Similarity=0.292 Sum_probs=62.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhC------CCCCEEEEEeCCCCC-----------CC--CCceEEEccCCChhHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRV------PVGSLVLGLDLVPIA-----------PI--RGAVSLEQDITKPECRARV 100 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~------p~~~~ViGVDLsp~~-----------~i--~~V~~i~gDIt~~~~~~~l 100 (832)
..++.+|+|.|||+|+|+..+..++ .....++|+|+++.. .+ ....+.++|.......
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~--- 120 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF--- 120 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC---
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc---
Confidence 3567789999999999998887754 235689999998631 11 1234667776543210
Q ss_pred HHHHhhccCCcccEEEeCCCCCCCCCchhHHh------H-----HhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 101 KKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAM------S-----QNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~------~-----q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
. ....||+|++||+++.. .|..... . ....-...+..+...|++||.+++-+
T Consensus 121 ----~--~~~~~D~ii~NPPf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 121 ----I--KNQKFDVIIGNPPFGSK-EWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp ----T--ST--EEEEEEE--CTCE-S-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ----c--cccccccccCCCCcccc-ccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 0 12578999999876543 1211110 0 00111235677899999999987744
No 189
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00038 Score=71.37 Aligned_cols=102 Identities=25% Similarity=0.218 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|.+||||+||+|+.+.-++.+. ...++.||.+.-. ...++.++..|.+. . +. .+.. .
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~--~---L~-~~~~--~ 112 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR--A---LK-QLGT--R 112 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH--H---HH-hcCC--C
Confidence 47899999999999998887763 4689999998521 12457777777762 1 11 1211 1
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
..||+|+.||+.+. +.+... +...+ -.-..+|+|||.+||....
T Consensus 113 ~~FDlVflDPPy~~-~l~~~~------~~~~~-~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 113 EPFDLVFLDPPYAK-GLLDKE------LALLL-LEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CcccEEEeCCCCcc-chhhHH------HHHHH-HHhcCCcCCCcEEEEEeCC
Confidence 34999999987542 222111 11111 1245789999999996543
No 190
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=0.00018 Score=75.78 Aligned_cols=140 Identities=17% Similarity=0.232 Sum_probs=86.0
Q ss_pred CchHHHHHHhcCchhHHHHHHHhhhhhcCCCC-CCCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCCC--------
Q 003302 10 LDKYYRLAKEHGYRSRASWKLVQLDSKFSFLR-SSHAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPIA-------- 79 (832)
Q Consensus 10 ~D~yy~~Ake~gyrsRaafKLiqi~~kf~fl~-~g~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~~-------- 79 (832)
-|.||..-+..-+..|-|. +.+...-+..-. +..+||++|||-|....-+.+..+. +-.|+++|.+|-+
T Consensus 39 wD~fy~~~~~rFfkdR~wL-~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~ 117 (264)
T KOG2361|consen 39 WDTFYKIHENRFFKDRNWL-LREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSS 117 (264)
T ss_pred hhhhhhhccccccchhHHH-HHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcc
Confidence 3556655555555555543 112111122111 2237999999999987777776653 3689999999832
Q ss_pred --CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 80 --PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 80 --~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
....+..+..|++.+. +...+ ..+.+|.|++--. -..-.++. ...++..+..+|+|||.+++
T Consensus 118 ~~~e~~~~afv~Dlt~~~----~~~~~---~~~svD~it~IFv---LSAi~pek------~~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 118 GYDESRVEAFVWDLTSPS----LKEPP---EEGSVDIITLIFV---LSAIHPEK------MQSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred ccchhhhcccceeccchh----ccCCC---CcCccceEEEEEE---EeccChHH------HHHHHHHHHHHhCCCcEEEE
Confidence 1235777888998865 11112 2377899887531 11112222 34688899999999999999
Q ss_pred EEcCCCCHH
Q 003302 158 KVFRSQDYS 166 (832)
Q Consensus 158 KVFrs~d~~ 166 (832)
.-|...+..
T Consensus 182 rDYg~~Dla 190 (264)
T KOG2361|consen 182 RDYGRYDLA 190 (264)
T ss_pred eecccchHH
Confidence 877766644
No 191
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00057 Score=71.87 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEc-cCCChhHHHHHHHHHhhc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQ-DITKPECRARVKKVMEEH 107 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~g-DIt~~~~~~~l~~~L~~~ 107 (832)
.++.+||++|++.|.-+.+++..+|.++++|.||+++-. .+.+ |..+.+ |..+ .+.. +
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~-----~l~~-~--- 128 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD-----VLSR-L--- 128 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH-----HHHh-c---
Confidence 467899999999999999999999988899999999721 2323 666664 5433 2222 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
..++||+|+.|.... .+ ...+..+..+|+|||.+|+
T Consensus 129 ~~~~fDliFIDadK~--------~y------p~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 129 LDGSFDLVFIDADKA--------DY------PEYLERALPLLRPGGLIVA 164 (219)
T ss_pred cCCCccEEEEeCChh--------hC------HHHHHHHHHHhCCCcEEEE
Confidence 238899999997531 11 2345577889999999998
No 192
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00023 Score=69.67 Aligned_cols=86 Identities=21% Similarity=0.219 Sum_probs=59.9
Q ss_pred hhHHHHH-HHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CC----CCceEEEccC
Q 003302 23 RSRASWK-LVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PI----RGAVSLEQDI 91 (832)
Q Consensus 23 rsRaafK-Liqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i----~~V~~i~gDI 91 (832)
|+..|-. |.-|...|+-+. |..++|||||.|-.+... .|+....|+|+||.|-. +. -++.++|+||
T Consensus 29 ~p~iAasM~~~Ih~TygdiE-gkkl~DLgcgcGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdi 105 (185)
T KOG3420|consen 29 RPHIAASMLYTIHNTYGDIE-GKKLKDLGCGCGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDI 105 (185)
T ss_pred cHHHHHHHHHHHHhhhcccc-CcchhhhcCchhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeec
Confidence 3333444 344566676443 689999999999988443 45567799999999832 11 2467899999
Q ss_pred CChhHHHHHHHHHhhccCCcccEEEeCCCCC
Q 003302 92 TKPECRARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 92 t~~~~~~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
+++.. .+ +.||.++.|+++.
T Consensus 106 ldle~--------~~---g~fDtaviNppFG 125 (185)
T KOG3420|consen 106 LDLEL--------KG---GIFDTAVINPPFG 125 (185)
T ss_pred cchhc--------cC---CeEeeEEecCCCC
Confidence 98642 22 7899999998754
No 193
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.37 E-value=0.0003 Score=76.14 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=52.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C-----CC--CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A-----PI--RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~-----~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++.+|||+|||+|.++..++.+. ..|+|||+++. . .+ +++.++++|+....... + .
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~-----~------~ 105 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE-----L------Q 105 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH-----c------C
Confidence 4577899999999999999999884 38999999972 1 12 57999999998754211 0 1
Q ss_pred ccEEEeCCCCC
Q 003302 112 FDLVLHDGSPN 122 (832)
Q Consensus 112 FDlVlsDgapn 122 (832)
+++|++|.+.+
T Consensus 106 ~~~vv~NlPY~ 116 (272)
T PRK00274 106 PLKVVANLPYN 116 (272)
T ss_pred cceEEEeCCcc
Confidence 48999997643
No 194
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.33 E-value=0.00021 Score=74.17 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhh
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
++.+|..|||++||-|.|+..++...+ ...|+|+|++|.. .+.+ +..+++|..+.. .
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~---------~- 166 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL---------P- 166 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------------
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc---------C-
Confidence 467899999999999999999998644 5799999999732 2333 678899987642 1
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
...||.|+++.++.. ...|..++.++++||++.
T Consensus 167 --~~~~drvim~lp~~~---------------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 --EGKFDRVIMNLPESS---------------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE--TSSG---------------GGGHHHHHHHEEEEEEEE
T ss_pred --ccccCEEEECChHHH---------------HHHHHHHHHHhcCCcEEE
Confidence 166799999764321 112345778899998874
No 195
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.32 E-value=0.00037 Score=73.74 Aligned_cols=103 Identities=15% Similarity=0.234 Sum_probs=68.9
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
..+|++|||-|.|+..+|...| ...++||++..- ..++|+..+++|++.. +...+.+ +++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~-----l~~~~~~---~sl 120 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV-----LDYLIPD---GSL 120 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH-----HHhcCCC---CCe
Confidence 5899999999999999999987 568999999852 1456888899988752 2222222 355
Q ss_pred cEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|-|..+-+- -|... |....-+....|....++|+|||.|.+++
T Consensus 121 ~~I~i~FPD----PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 121 DKIYINFPD----PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred eEEEEECCC----CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 766665421 13221 11111112455678899999999998743
No 196
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.31 E-value=0.00067 Score=73.53 Aligned_cols=100 Identities=23% Similarity=0.281 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCCC-----------CCCCc-eEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPIA-----------PIRGA-VSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~~-----------~i~~V-~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
..-+|||+|||+|-...-+....|. ...|.-+|.++++ .+.++ .|.++|+.+......+ .
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l----~--- 207 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL----D--- 207 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc----C---
Confidence 3468999999999988777777664 3578889999853 35665 8999999986543221 1
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
...++++..|- .+-|.-..++..+|.-+..+|.|||++|.
T Consensus 208 -p~P~l~iVsGL--------~ElF~Dn~lv~~sl~gl~~al~pgG~lIy 247 (311)
T PF12147_consen 208 -PAPTLAIVSGL--------YELFPDNDLVRRSLAGLARALEPGGYLIY 247 (311)
T ss_pred -CCCCEEEEecc--------hhhCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 33488887663 33344556777888889999999999976
No 197
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.30 E-value=0.0013 Score=69.15 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------CC----CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------PI----RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~i----~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.++||||.-||.-+...|-.+|.+++|+++|+++-. .. ..|+++++.... .|.+.+.....
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e-----sLd~l~~~~~~ 147 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE-----SLDELLADGES 147 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh-----hHHHHHhcCCC
Confidence 46799999999999999999999999999999999732 11 236777776543 34455555456
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
++||+|+.|. | .+.+. .-+..++++||+||.+++
T Consensus 148 ~tfDfaFvDa-------d-K~nY~------~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 148 GTFDFAFVDA-------D-KDNYS------NYYERLLRLLRVGGVIVV 181 (237)
T ss_pred CceeEEEEcc-------c-hHHHH------HHHHHHHhhcccccEEEE
Confidence 8999999985 2 22222 223467899999999997
No 198
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.25 E-value=0.00038 Score=73.43 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
+..+||+||..|..++.+++..+ ...|+||||.+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~ 92 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDP 92 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-cceeeEeeccH
Confidence 46799999999999999999987 45799999996
No 199
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.22 E-value=0.00056 Score=80.68 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCC-------CCEEEEEeCCCCC---------CCC--CceEEEccCCChhHHHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPV-------GSLVLGLDLVPIA---------PIR--GAVSLEQDITKPECRARVKKV 103 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~-------~~~ViGVDLsp~~---------~i~--~V~~i~gDIt~~~~~~~l~~~ 103 (832)
...+|||.|||+|+|+..++.+++. ...|+|+|+++.. ... ++.+.+.|....... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~-----~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLL-----N 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccc-----c
Confidence 4568999999999999988877641 2468999998632 111 233344443321100 0
Q ss_pred HhhccCCcccEEEeCCCC
Q 003302 104 MEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 104 L~~~~~~~FDlVlsDgap 121 (832)
.. ...+.||+|++||+.
T Consensus 106 ~~-~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 106 IE-SYLDLFDIVITNPPY 122 (524)
T ss_pred cc-cccCcccEEEeCCCc
Confidence 00 112578999999864
No 200
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.18 E-value=0.00084 Score=74.32 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCC-ceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRG-AVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+-++.+|||+|||+|.+++.+|+.. ..+|+|||-+.|. .+.+ |++++|.+.+.. |+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~--------LP--- 124 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE--------LP--- 124 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe--------cC---
Confidence 3468899999999999999988874 5689999999764 2334 677888777643 22
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
...+|+|+|.-. |.|..- ...+..+|-.=-++|+|||.++
T Consensus 125 ~eKVDiIvSEWM----Gy~Ll~----EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 125 VEKVDIIVSEWM----GYFLLY----ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ccceeEEeehhh----hHHHHH----hhhhhhhhhhhhhccCCCceEc
Confidence 256799998622 222221 1122334444457899999875
No 201
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.18 E-value=0.0016 Score=65.97 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-------------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-------------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-------------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
..++.+||+||||+|-.+.+++...+ ...|+..|..+.. ....|.+...|+.+... ...+..
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~----~~~~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELD----SDLLEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HH----HHHHS-
T ss_pred hcCCceEEEECCccchhHHHHHhccC-CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccc----cccccc
Confidence 45678999999999998888888743 5689999998731 11346666777765321 112222
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc-CCCCHHHHHHHH
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF-RSQDYSSVLYCL 172 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF-rs~d~~~ll~~L 172 (832)
..||+|++.-. .+.... ....+..+..+|.|+|.+++..- |......++..+
T Consensus 118 ---~~~D~IlasDv-----~Y~~~~------~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~ 170 (173)
T PF10294_consen 118 ---HSFDVILASDV-----LYDEEL------FEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRL 170 (173)
T ss_dssp ---SSBSEEEEES-------S-GGG------HHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH
T ss_pred ---ccCCEEEEecc-----cchHHH------HHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHh
Confidence 57899997421 122221 23455667789999998766432 433333444443
No 202
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.17 E-value=0.00074 Score=76.75 Aligned_cols=89 Identities=21% Similarity=0.134 Sum_probs=63.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+|||++||+|.++..++...+ ...|+++|+++.. .+.++.++++|+... +.. ...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~---------l~~--~~~ 125 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL---------LHE--ERK 125 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH---------Hhh--cCC
Confidence 46899999999999999988765 3589999999721 344566778887442 110 156
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
||+|+.|+. |.. ...+..|...+++||.+.+.
T Consensus 126 fD~V~lDP~----Gs~-----------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 126 FDVVDIDPF----GSP-----------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCEEEECCC----CCc-----------HHHHHHHHHHhcCCCEEEEE
Confidence 899999973 211 12344567788999999986
No 203
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.17 E-value=0.00031 Score=70.72 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=59.5
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc-
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA- 111 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~- 111 (832)
.|||+|||-||-+..+|... ..|+|||++|.. . ..+|.++++|+.+.. .......
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~---------~~~~~~~~ 69 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL---------KRLKSNKI 69 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG---------GGB-----
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH---------hhcccccc
Confidence 69999999999999999874 489999999842 1 246899999987632 1111111
Q ss_pred ccEEEeCCCCCCCCC-chh-HHhHH----hH-HHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 112 FDLVLHDGSPNVGGA-WAQ-EAMSQ----NA-LVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 112 FDlVlsDgapnv~g~-w~~-D~~~q----~~-L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
||+|+++|+ +||. +.. +.+.. .. -+..+++.+..+ -..+++...|+.+..+|..+...
T Consensus 70 ~D~vFlSPP--WGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~---t~nv~l~LPRn~dl~ql~~~~~~ 134 (163)
T PF09445_consen 70 FDVVFLSPP--WGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI---TPNVVLFLPRNSDLNQLSQLTRE 134 (163)
T ss_dssp -SEEEE-----BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEETTB-HHHHHHT---
T ss_pred ccEEEECCC--CCCccccccCccCHHHccCCCCHHHHHHHHHhh---CCCEEEEeCCCCCHHHHHHHhcc
Confidence 699999863 4442 111 11111 01 012333333322 34567767788888877655443
No 204
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0076 Score=65.88 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=84.1
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------C-------CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------P-------IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------~-------i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+||-||-|.|+++..++++.+ -.+|+.|||++.. + -|++..+.+|.... +....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~---------v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF---------LRDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH---------HHhCC
Confidence 5999999999999999999876 4599999999621 1 25677777776542 22211
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC-----HHHHHHHHHHcccceEEec
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD-----YSSVLYCLKQLFEKVEVDK 183 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d-----~~~ll~~L~~~F~~V~~~K 183 (832)
..||+|++|.....|..-.+ .....++.+.++|+++|+||+-. .+.. +..+...+...|..+..+-
T Consensus 148 -~~fDvIi~D~tdp~gp~~~L-------ft~eFy~~~~~~L~~~Gi~v~q~-~~~~~~~~~~~~~~~~~~~vf~~~~~~~ 218 (282)
T COG0421 148 -EKFDVIIVDSTDPVGPAEAL-------FTEEFYEGCRRALKEDGIFVAQA-GSPFLQDEEIALAYRNVSRVFSIVPPYV 218 (282)
T ss_pred -CcCCEEEEcCCCCCCccccc-------CCHHHHHHHHHhcCCCcEEEEec-CCcccchHHHHHHHHHHHhhccccccce
Confidence 46899999975333211111 11345667899999999999852 2222 1233344555565544322
Q ss_pred -CCCCCCCCcceeEEEeec
Q 003302 184 -PAASRSASAEIYLLGIKY 201 (832)
Q Consensus 184 -P~sSR~~SaEiyvVc~gf 201 (832)
|...-.+.-..|+++-..
T Consensus 219 ~~ipt~~~g~~~f~~~s~~ 237 (282)
T COG0421 219 APIPTYPSGFWGFIVASFN 237 (282)
T ss_pred eccceecCCceEEEEeecC
Confidence 122222223456665533
No 205
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.15 E-value=0.00085 Score=78.96 Aligned_cols=104 Identities=12% Similarity=0.207 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
..+..+||+|||.|.|+..+|...| ...++|||+... ..+.|+.++.+|+.. +...+..
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~------~~~~~~~--- 415 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL------ILNDLPN--- 415 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH------HHHhcCc---
Confidence 3578999999999999999999987 679999999852 145677777665432 3334444
Q ss_pred CcccEEEeCCCCCCCCCchhH-HhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQE-AMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D-~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+++|.|..+-+ .-|... |....-.....|....++|+|||.|.+.
T Consensus 416 ~sv~~i~i~FP----DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 416 NSLDGIYILFP----DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred ccccEEEEECC----CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 45688877643 123221 1111111245567889999999999873
No 206
>PRK04148 hypothetical protein; Provisional
Probab=97.13 E-value=0.0024 Score=62.36 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCcCH-HHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 42 SSHAVLDLCAAPGG-WMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 42 ~g~~VLDLGcGPGg-~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
++.+|||+|||+|. ++..|++. +..|+|||+++-. ....+.++++|++++... .. ..+|+|.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~-----~y-----~~a~liy 82 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE-----IY-----KNAKLIY 82 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH-----HH-----hcCCEEE
Confidence 46789999999996 88888754 5699999999842 123578899999987521 11 4569999
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
+--+| .+|+..++.+|..+ |..|+++.+.+..
T Consensus 83 sirpp-------------~el~~~~~~la~~~---~~~~~i~~l~~e~ 114 (134)
T PRK04148 83 SIRPP-------------RDLQPFILELAKKI---NVPLIIKPLSGEE 114 (134)
T ss_pred EeCCC-------------HHHHHHHHHHHHHc---CCCEEEEcCCCCC
Confidence 86443 13445566666654 8888887666553
No 207
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.13 E-value=0.00047 Score=79.84 Aligned_cols=94 Identities=21% Similarity=0.313 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC---CCCCEEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV---PVGSLVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~---p~~~~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
.+.+|+|+|||+|.++..+++.. ....+|+||+-++++ .. ..|+++++|+++....
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp--------- 256 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP--------- 256 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---------
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---------
Confidence 35789999999999987665542 224599999999842 12 3589999999986532
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
..+|+|+|--. | ..-.. ++....|..+.++|+|||.++
T Consensus 257 ---ekvDIIVSElL---G-sfg~n-----El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 257 ---EKVDIIVSELL---G-SFGDN-----ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---S-EEEEEE------B-TTBTT-----TSHHHHHHHGGGGEEEEEEEE
T ss_pred ---CceeEEEEecc---C-Ccccc-----ccCHHHHHHHHhhcCCCCEEe
Confidence 46699999743 1 11111 122334556788999999987
No 208
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.12 E-value=0.0011 Score=69.92 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=65.5
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----CCCCceEEEc--cCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----PIRGAVSLEQ--DITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----~i~~V~~i~g--DIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
..++|+|||+|--++.++.+.. .|||+|+++ |. ..+++++... -+.+.. +...+.. -.++|+|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~----~v~L~g~--e~SVDlI~ 105 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDE----MVDLLGG--EESVDLIT 105 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccc----cccccCC--Ccceeeeh
Confidence 3899999999977788887743 799999997 32 2333332211 011100 0011111 26779999
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCc-EEEEEEcCC--CCHHHHHHHHHHccc
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKG-TFVTKVFRS--QDYSSVLYCLKQLFE 177 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG-~fV~KVFrs--~d~~~ll~~L~~~F~ 177 (832)
|--+ .+|. + +..+++.|.++||+.| ++.+=.++. ..+..+..+|..+..
T Consensus 106 ~Aqa----~HWF-d-------le~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 106 AAQA----VHWF-D-------LERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred hhhh----HHhh-c-------hHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh
Confidence 8533 1332 1 2456778999998866 666655552 234555555555443
No 209
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.08 E-value=0.0039 Score=66.81 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
....+||=||-|.|+.+..+.++.+ ...|++|||++.. .-|++.++.+|.... +.
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~---------l~ 144 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF---------LK 144 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH---------HH
T ss_pred CCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH---------HH
Confidence 3568999999999999988887643 4689999999731 135788888886542 22
Q ss_pred hccCC-cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC----HHHHHHHHHHcccceE
Q 003302 106 EHGVR-AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD----YSSVLYCLKQLFEKVE 180 (832)
Q Consensus 106 ~~~~~-~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d----~~~ll~~L~~~F~~V~ 180 (832)
... . .||+|+.|.....+.... -+ ....+..+.+.|+|||.|++-...... +..+...|+..|..|.
T Consensus 145 ~~~-~~~yDvIi~D~~dp~~~~~~--l~-----t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~ 216 (246)
T PF01564_consen 145 ETQ-EEKYDVIIVDLTDPDGPAPN--LF-----TREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVK 216 (246)
T ss_dssp TSS-ST-EEEEEEESSSTTSCGGG--GS-----SHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEE
T ss_pred hcc-CCcccEEEEeCCCCCCCccc--cc-----CHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceE
Confidence 222 4 799999997532211111 11 235567889999999999986532221 2334456777788665
Q ss_pred Eec-CCCCCCCCcceeEEEeecc
Q 003302 181 VDK-PAASRSASAEIYLLGIKYK 202 (832)
Q Consensus 181 ~~K-P~sSR~~SaEiyvVc~gfk 202 (832)
.+. +..+-...--.|++|.+-.
T Consensus 217 ~~~~~vP~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 217 PYTAYVPSYGSGWWSFASASKDI 239 (246)
T ss_dssp EEEEECTTSCSSEEEEEEEESST
T ss_pred EEEEEcCeecccceeEEEEeCCC
Confidence 432 3333333334566665544
No 210
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.07 E-value=0.00095 Score=71.04 Aligned_cols=84 Identities=29% Similarity=0.300 Sum_probs=62.0
Q ss_pred chhHHHHHHHhhhhhcC-------CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCC----CCCceEEEcc
Q 003302 22 YRSRASWKLVQLDSKFS-------FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP----IRGAVSLEQD 90 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~-------fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~----i~~V~~i~gD 90 (832)
.-||+..||-+....|- -|.+|+..+||||+||||+-.|.++ +-.|++||-.+|.+ .+.|+....|
T Consensus 184 APSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma~sL~dtg~v~h~r~D 260 (358)
T COG2933 184 APSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMAQSLMDTGQVTHLRED 260 (358)
T ss_pred CCchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc---ceEEEEeccchhhhhhhcccceeeeecc
Confidence 45899999887544443 2568999999999999999888776 56899999999864 2447777777
Q ss_pred CCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 91 ITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 91 It~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
-..... ....+|-.+||+
T Consensus 261 Gfk~~P-----------~r~~idWmVCDm 278 (358)
T COG2933 261 GFKFRP-----------TRSNIDWMVCDM 278 (358)
T ss_pred Cccccc-----------CCCCCceEEeeh
Confidence 654321 014569999997
No 211
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.04 E-value=0.002 Score=67.17 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=58.1
Q ss_pred CCEEEEEcCCcCHHHHHHH---HhCCCCCEEEEEeCCC--CC-------C-CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAV---QRVPVGSLVLGLDLVP--IA-------P-IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La---~~~p~~~~ViGVDLsp--~~-------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
...||++|.+-||=+...| ..++..++|+|||+.. .. | .++|++++||.+++.....+......
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~--- 109 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP--- 109 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS------
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc---
Confidence 4799999999999665554 4555578999999942 11 1 26799999999998876554433322
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
....+|+-|+. +..++ ++..|..-..+|.+|+++|+
T Consensus 110 ~~~vlVilDs~------H~~~h------vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILDSS------HTHEH------VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp -SSEEEEESS----------SS------HHHHHHHHHHT--TT-EEEE
T ss_pred CCceEEEECCC------ccHHH------HHHHHHHhCccCCCCCEEEE
Confidence 23368888863 22222 34566778899999999997
No 212
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.03 E-value=0.0027 Score=71.46 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=39.1
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCCh
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKP 94 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~ 94 (832)
.+|||||||+|.++..++... ..|+|||+++- ..+.++.++++|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 479999999999999998874 38999999962 1355788999998653
No 213
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.02 E-value=0.0034 Score=70.89 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=49.0
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHH-----hh-
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVM-----EE- 106 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L-----~~- 106 (832)
.+|||||||+|.++..++... ..|+|||+++- ..+.++.++++|+.+.- ..+.... ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l--~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT--QAMNGVREFNRLKGI 282 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH--HHHhhcccccccccc
Confidence 579999999999999888763 48999999962 13457889999986531 1111000 00
Q ss_pred -ccCCcccEEEeCCC
Q 003302 107 -HGVRAFDLVLHDGS 120 (832)
Q Consensus 107 -~~~~~FDlVlsDga 120 (832)
.....||+|+.||+
T Consensus 283 ~~~~~~~D~v~lDPP 297 (362)
T PRK05031 283 DLKSYNFSTIFVDPP 297 (362)
T ss_pred cccCCCCCEEEECCC
Confidence 00124799999986
No 214
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.97 E-value=0.0016 Score=69.83 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=60.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC---CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA---PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
..++||||||-|+.+..++.... .|++.++|+ |. .-.+.+.+.. .+.. . ....||+|.|-
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~kg~~vl~~--~~w~----------~-~~~~fDvIscL 158 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKKGFTVLDI--DDWQ----------Q-TDFKFDVISCL 158 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhCCCeEEeh--hhhh----------c-cCCceEEEeeh
Confidence 46799999999999999998764 799999998 43 2345544422 2211 0 01568999983
Q ss_pred CCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 119 GSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 119 gapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|+ .|.-. -....|..+...|+|+|.+|+-+
T Consensus 159 ---Nv-----LDRc~---~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 ---NV-----LDRCD---RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ---hh-----hhccC---CHHHHHHHHHHHhCCCCEEEEEE
Confidence 32 22211 12456777889999999999854
No 215
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.87 E-value=0.0012 Score=60.78 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=40.0
Q ss_pred EEEcCCcCHHHHHHHHhCCCCC--EEEEEeCCCC---C-------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 47 LDLCAAPGGWMQVAVQRVPVGS--LVLGLDLVPI---A-------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 47 LDLGcGPGg~sq~La~~~p~~~--~ViGVDLsp~---~-------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
|++|++.|..+.+++..++... ++++||..+. . .+ .++.+++++..+. +. .+.. ++||
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----l~-~~~~---~~~d 71 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDF-----LP-SLPD---GPID 71 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHH-----HH-HHHH-----EE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHH-----HH-HcCC---CCEE
Confidence 6899999999988888776654 7999999982 1 11 3588889987542 11 2222 6789
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.||.. .. .-+...+..+...|+|||.+|+
T Consensus 72 li~iDg~H------~~------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 72 LIFIDGDH------SY------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEEEES---------H------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEECCCC------CH------HHHHHHHHHHHHHcCCCeEEEE
Confidence 99999742 11 1234567788999999999886
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.76 E-value=0.0047 Score=64.48 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------------------CCCCceEEEccCCChhHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------------------PIRGAVSLEQDITKPECRAR 99 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------------------~i~~V~~i~gDIt~~~~~~~ 99 (832)
+.++.+++|||||.|.....++-..+ ..+.+||++.+.. ....+.+.++|+++......
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 57889999999999998766665544 4579999999621 12346788999998664332
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+ +. .+ |+|++|.- ..++ .| ...|...+..|++|-.+|+
T Consensus 119 ~---~s--~A---dvVf~Nn~-------~F~~----~l-~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 119 I---WS--DA---DVVFVNNT-------CFDP----DL-NLALAELLLELKPGARIIS 156 (205)
T ss_dssp H---GH--C----SEEEE--T-------TT-H----HH-HHHHHHHHTTS-TT-EEEE
T ss_pred h---hc--CC---CEEEEecc-------ccCH----HH-HHHHHHHHhcCCCCCEEEE
Confidence 2 21 23 99999842 1121 12 2344556677888877775
No 217
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.76 E-value=0.0066 Score=67.86 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=69.3
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
...|.+|||+-||-|.|+..+|.+..+ .|+|+||+|-. .+.+ +..++||....... +
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~------~--- 254 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE------L--- 254 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc------c---
Confidence 456999999999999999999988542 49999999831 3344 78899998764211 1
Q ss_pred cCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 108 GVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
+.||.|+.+-+.. ....+-.|+.+|++||++.+-.|...
T Consensus 255 --~~aDrIim~~p~~---------------a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 255 --GVADRIIMGLPKS---------------AHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred --ccCCEEEeCCCCc---------------chhhHHHHHHHhhcCcEEEEEeccch
Confidence 4569999875421 12334568889999999988665544
No 218
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0016 Score=67.65 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=61.5
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCE-EEEEeCCCCC---------------------CCCCceEEEccCCChhH
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSL-VLGLDLVPIA---------------------PIRGAVSLEQDITKPEC 96 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~-ViGVDLsp~~---------------------~i~~V~~i~gDIt~~~~ 96 (832)
.|+||...||+|.|+|.++.+++..++..+. ++|||+-+-. ....+.++.+|.....
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~- 157 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY- 157 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC-
Confidence 3789999999999999999999977766555 4999887521 0123455666655421
Q ss_pred HHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 97 RARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 97 ~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
....+||.|.+-++. + ......+..|++||.+++=+
T Consensus 158 ----------~e~a~YDaIhvGAaa-------~----------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 158 ----------AEQAPYDAIHVGAAA-------S----------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ----------CccCCcceEEEccCc-------c----------ccHHHHHHhhccCCeEEEee
Confidence 112567888775321 1 11224568899999998733
No 219
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.70 E-value=0.0053 Score=63.91 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCCC-EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCc-eEEEccCCChhHHHHHHHHHhh
Q 003302 40 LRSSH-AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGA-VSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 40 l~~g~-~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V-~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
|.... +||+||||||--+.+++..+| .....-.|+.+.. ..+|+ .-+..|++.....-.... .
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~---~ 97 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPA---P 97 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccccc---c
Confidence 44444 599999999999999999998 3455555665421 23342 234567776521100000 0
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.....||.|+|-- .-|......+...+..|.++|++||.|++
T Consensus 98 ~~~~~~D~i~~~N---------~lHI~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 98 LSPESFDAIFCIN---------MLHISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred cCCCCcceeeehh---------HHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 0125789999852 22333344567788899999999999986
No 220
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.68 E-value=0.005 Score=69.85 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=63.5
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+|||+.||+|..+..++...+....|+++|+++.. .+.++.++++|+... +.. . ...|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~-----l~~-~----~~~f 115 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV-----LRY-R----NRKF 115 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH-----HHH-h----CCCC
Confidence 589999999999999998876434689999999731 234567777776542 111 1 1468
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+|..|+ +. . .. ..+..|...+++||.+.+.
T Consensus 116 DvIdlDP-fG---s--~~---------~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 116 HVIDIDP-FG---T--PA---------PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CEEEeCC-CC---C--cH---------HHHHHHHHhcccCCEEEEE
Confidence 9999997 32 1 11 2344677889999999875
No 221
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.68 E-value=0.0039 Score=64.07 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=66.4
Q ss_pred cCCCCCCC-EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHH
Q 003302 37 FSFLRSSH-AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 37 f~fl~~g~-~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
+.++.... +|+|+|+|.|-=+..++=..| ...|+.||.+.- ..+.||.++++.+.+..
T Consensus 42 ~~~~~~~~~~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--------- 111 (184)
T PF02527_consen 42 LPFLPDFGKKVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE--------- 111 (184)
T ss_dssp GGCS-CCCSEEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT---------
T ss_pred hhhhccCCceEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc---------
Confidence 33455444 899999999987777777776 678999999852 15788999998876511
Q ss_pred hhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 105 EEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
....||+|++-+-.. +...+..+..+|++||.|++ +.+..+
T Consensus 112 ---~~~~fd~v~aRAv~~---------------l~~l~~~~~~~l~~~G~~l~--~KG~~~ 152 (184)
T PF02527_consen 112 ---YRESFDVVTARAVAP---------------LDKLLELARPLLKPGGRLLA--YKGPDA 152 (184)
T ss_dssp ---TTT-EEEEEEESSSS---------------HHHHHHHHGGGEEEEEEEEE--EESS--
T ss_pred ---cCCCccEEEeehhcC---------------HHHHHHHHHHhcCCCCEEEE--EcCCCh
Confidence 127889999986311 12455678899999999986 455543
No 222
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.68 E-value=0.0032 Score=68.99 Aligned_cols=149 Identities=19% Similarity=0.288 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCC----------C-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAP----------I-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~----------i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+..|||+|||.|.++..+++.. ..+|++|+-+.|.. + .+++++-|-|.+...+ .
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP------------E 242 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP------------E 242 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc------------h
Confidence 47899999999999999888763 45899999998742 1 3467777777665422 4
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE---Ec-CCCC--------HHHHHHHHHHcccc
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK---VF-RSQD--------YSSVLYCLKQLFEK 178 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K---VF-rs~d--------~~~ll~~L~~~F~~ 178 (832)
.+|+|++.+. |.....+. .+...-.|.++|+|.|.+.-. ++ .++. ++....-.++.|-.
T Consensus 243 k~DviISEPM---G~mL~NER------MLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyG 313 (517)
T KOG1500|consen 243 KVDVIISEPM---GYMLVNER------MLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYG 313 (517)
T ss_pred hccEEEeccc---hhhhhhHH------HHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhcccc
Confidence 5599999864 21111111 123333578999999987632 22 2222 11112223455666
Q ss_pred eEEecCCCCCCCCcceeEEEeeccCC--CCCCCCccchhhhcccC
Q 003302 179 VEVDKPAASRSASAEIYLLGIKYKAP--AKIDPRLLDVKYLFQGS 221 (832)
Q Consensus 179 V~~~KP~sSR~~SaEiyvVc~gfk~p--~~id~~~ldp~~vf~~~ 221 (832)
|.++ |...-. +-.-|+-| +.+|+|++=...||-.+
T Consensus 314 VdLt-~L~g~a-------~~eYFrQPvVDtFD~RilmA~sv~h~~ 350 (517)
T KOG1500|consen 314 VDLT-PLYGSA-------HQEYFRQPVVDTFDIRILMAKSVFHVI 350 (517)
T ss_pred ccch-hhhhhh-------hhhhhccccccccccceeeccchHhhh
Confidence 7665 322111 11224444 45778888777776554
No 223
>PRK00536 speE spermidine synthase; Provisional
Probab=96.54 E-value=0.016 Score=62.66 Aligned_cols=108 Identities=11% Similarity=0.106 Sum_probs=70.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
+...+||=+|.|-||.+.-++++ + ..|+-|||.+.. .-|++..+.. +.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--------------~~ 133 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--------------LL 133 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh--------------hh
Confidence 44588999999999999988887 2 399999998621 1244444421 11
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC----CCCHHHHHHHHHHcccceEE
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR----SQDYSSVLYCLKQLFEKVEV 181 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr----s~d~~~ll~~L~~~F~~V~~ 181 (832)
....+.||+|++|..+. . ...+.+.+.|+|||.||+..-. ...+..+...++..|..|..
T Consensus 134 ~~~~~~fDVIIvDs~~~------~----------~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~ 197 (262)
T PRK00536 134 DLDIKKYDLIICLQEPD------I----------HKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMP 197 (262)
T ss_pred hccCCcCCEEEEcCCCC------h----------HHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEE
Confidence 11125789999996432 1 2234678999999999984322 22234555666677875544
No 224
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.51 E-value=0.0035 Score=64.04 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=64.3
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
..+.|||+|+|.++.++++. .-+|++|+..|-. ...++.++.+|..+... ...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-------------e~A 97 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-------------ENA 97 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-------------ccc
Confidence 67999999999999999887 3489999999831 13458889999987531 233
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+|+|-+ .|..-..+-+..++..++.+|+..|++|-
T Consensus 98 DvvicEm---------lDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 98 DVVICEM---------LDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred ceeHHHH---------hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 9999975 22222122234567778889999999874
No 225
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.51 E-value=0.031 Score=62.25 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=78.0
Q ss_pred chhHHHHHHHhhhhh--cCCCCCCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCC---------CC--CCCCce
Q 003302 22 YRSRASWKLVQLDSK--FSFLRSSHAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVP---------IA--PIRGAV 85 (832)
Q Consensus 22 yrsRaafKLiqi~~k--f~fl~~g~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp---------~~--~i~~V~ 85 (832)
|-.|.-..|++-... -..+.++..+||||||.|..+..|...+. .....++||+|. +. .+|++.
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~ 133 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVR 133 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeE
Confidence 566666665543211 11356778999999999999877766553 235799999994 11 356654
Q ss_pred E--EEccCCChhHHHHHHHHHhh-ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHh-hcccCcEEEEEEcC
Q 003302 86 S--LEQDITKPECRARVKKVMEE-HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQ-FLAPKGTFVTKVFR 161 (832)
Q Consensus 86 ~--i~gDIt~~~~~~~l~~~L~~-~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~-~LkpGG~fV~KVFr 161 (832)
+ +++|+++.-. .+.. .......+|+.-|+- -|+..++. ....|+...+ .|.|||.|++-+=.
T Consensus 134 v~~l~gdy~~~l~------~l~~~~~~~~~r~~~flGSs--iGNf~~~e------a~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 134 CAGLLGTYDDGLA------WLKRPENRSRPTTILWLGSS--IGNFSRPE------AAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred EEEEEecHHHHHh------hcccccccCCccEEEEeCcc--ccCCCHHH------HHHHHHHHHHhhCCCCCEEEEecCC
Confidence 4 8899877421 1211 001234788887741 12222222 2345566677 99999999985533
Q ss_pred CCC
Q 003302 162 SQD 164 (832)
Q Consensus 162 s~d 164 (832)
..+
T Consensus 200 ~k~ 202 (319)
T TIGR03439 200 CKD 202 (319)
T ss_pred CCC
Confidence 333
No 226
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.41 E-value=0.0021 Score=64.06 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=43.1
Q ss_pred CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 82 RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 82 ~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
.+|.++++|+.+.+. . .++||+|++... -+|..+ ...+|+.++++|+|||.|++-.|.
T Consensus 26 ~~i~~~~~d~~~lp~--------~---~~~fD~v~~~~~----l~~~~d-------~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 26 KCIEWIEGDAIDLPF--------D---DCEFDAVTMGYG----LRNVVD-------RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred CceEEEEechhhCCC--------C---CCCeeEEEecch----hhcCCC-------HHHHHHHHHHHcCcCeEEEEEECC
Confidence 358999999987531 1 267899998642 122222 246788999999999999987776
Q ss_pred CCC
Q 003302 162 SQD 164 (832)
Q Consensus 162 s~d 164 (832)
..+
T Consensus 84 ~~~ 86 (160)
T PLN02232 84 KSN 86 (160)
T ss_pred CCC
Confidence 544
No 227
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.38 E-value=0.026 Score=59.44 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=62.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+|+|+|+|+|-=+..++=..| +..|+-||...- ..++|+.++++.+.+.. .. ..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~----------~~--~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG----------QE--KK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc----------cc--cc
Confidence 58999999999977777664444 567999998752 25788999988776632 10 12
Q ss_pred -ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 112 -FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 112 -FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
||+|+|-+-.+ +...+..+..+|++||.|+.
T Consensus 135 ~~D~vtsRAva~---------------L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 135 QYDVVTSRAVAS---------------LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred cCcEEEeehccc---------------hHHHHHHHHHhcccCCcchh
Confidence 89999986211 12345678899999999875
No 228
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.29 E-value=0.0039 Score=64.02 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLV 76 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLs 76 (832)
|.+|+.|+||-.|-|.|+..++..+++.+.|+++=..
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~ 82 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA 82 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence 6899999999999999999999999999999998444
No 229
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.29 E-value=0.012 Score=61.21 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=54.0
Q ss_pred CCEEEEEcCCcCH--H--HHHHHHhC----CCCCEEEEEeCCCCC---------------CC------------------
Q 003302 43 SHAVLDLCAAPGG--W--MQVAVQRV----PVGSLVLGLDLVPIA---------------PI------------------ 81 (832)
Q Consensus 43 g~~VLDLGcGPGg--~--sq~La~~~----p~~~~ViGVDLsp~~---------------~i------------------ 81 (832)
.-+|+-.||++|- + +.++.... +....|+|.|+++.. .+
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4689999999996 3 33444421 223589999999410 11
Q ss_pred ------CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEE
Q 003302 82 ------RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTF 155 (832)
Q Consensus 82 ------~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~f 155 (832)
..|.|.+.|+.+.. ...+.||+|+|- ||-- +-.......++...+..|+|||+|
T Consensus 112 v~~~lr~~V~F~~~NL~~~~-----------~~~~~fD~I~CR---NVlI------YF~~~~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPD-----------PPFGRFDLIFCR---NVLI------YFDPETQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S-----------------EEEEEE----SSGG------GS-HHHHHHHHHHHGGGEEEEEEE
T ss_pred EChHHcCceEEEecccCCCC-----------cccCCccEEEec---CEEE------EeCHHHHHHHHHHHHHHcCCCCEE
Confidence 23667777777611 112788999997 3311 222234567888899999999999
Q ss_pred EE
Q 003302 156 VT 157 (832)
Q Consensus 156 V~ 157 (832)
++
T Consensus 172 ~l 173 (196)
T PF01739_consen 172 FL 173 (196)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 230
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.18 E-value=0.0026 Score=66.69 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC------CCCC--ceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA------PIRG--AVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~------~i~~--V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.-..++||||+-|....++.... -.++|-+|-+. |. .-|. +.++.+|=..++ +.. .+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld--------f~e---ns 137 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD--------FKE---NS 137 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhccc--------ccc---cc
Confidence 344689999999999999988763 34788999886 32 1244 345667655433 222 67
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHH
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLK 173 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~ 173 (832)
||+|++..+ .+|..+-. ..+..|...|+|.|.|+..+|.+.++-.|...++
T Consensus 138 ~DLiisSls----lHW~NdLP-------g~m~~ck~~lKPDg~FiasmlggdTLyELR~slq 188 (325)
T KOG2940|consen 138 VDLIISSLS----LHWTNDLP-------GSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQ 188 (325)
T ss_pred hhhhhhhhh----hhhhccCc-------hHHHHHHHhcCCCccchhHHhccccHHHHHHHhh
Confidence 799999753 46665422 3445688899999999999999888666554443
No 231
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.0077 Score=69.68 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=45.4
Q ss_pred HHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEc
Q 003302 29 KLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQ 89 (832)
Q Consensus 29 KLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~g 89 (832)
+|+.+.....-+..+..+||+|||||.++..+++.. ..|+||+++|- +.+.|++|++|
T Consensus 370 vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeec
Confidence 455544445556788999999999999999999874 48999999973 13567899998
No 232
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.08 E-value=0.0033 Score=72.64 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=54.3
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCC-CCceE--------EEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPI-RGAVS--------LEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i-~~V~~--------i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++||+|||.|+|+-+|..+ + |+.+-+.+.... ..+.| +.+-+.+. .|+ -+.+.||+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~--V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~--------rLP-fp~~~fDm 184 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---N--VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQ--------RLP-FPSNAFDM 184 (506)
T ss_pred EEEEeccceeehhHHHHhhC---C--ceEEEcccccCCchhhhhhhhcCcchhhhhhccc--------ccc-CCccchhh
Confidence 56999999999999988876 3 445544443211 11211 11111110 111 12378899
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
|.|... .-.|....- ..|-.+-++|||||+||.+-..
T Consensus 185 vHcsrc---~i~W~~~~g-------~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 185 VHCSRC---LIPWHPNDG-------FLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhcccc---cccchhccc-------ceeehhhhhhccCceEEecCCc
Confidence 998643 223554321 1344678999999999986543
No 233
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.04 E-value=0.012 Score=65.07 Aligned_cols=106 Identities=24% Similarity=0.269 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-C--------C----------C-CceEEEccCCChhHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-P--------I----------R-GAVSLEQDITKPECRAR 99 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-~--------i----------~-~V~~i~gDIt~~~~~~~ 99 (832)
..+|..|.|=-.|||++...++.. ++.|+|.||.-.. . + + -+.++.+|.+.++.+.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs- 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS- 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh-
Confidence 579999999999999998888776 6799999998521 0 0 1 1446788888876432
Q ss_pred HHHHHhhccCCcccEEEeCCCCCCC-------C-------------C--chhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSPNVG-------G-------------A--WAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgapnv~-------g-------------~--w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
...||+|+||++..+- + . ....++....++...|..+.+.|.-||++|+
T Consensus 282 ---------n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 282 ---------NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred ---------cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 2567999999853220 0 0 0123344456677889999999999999998
Q ss_pred E
Q 003302 158 K 158 (832)
Q Consensus 158 K 158 (832)
-
T Consensus 353 w 353 (421)
T KOG2671|consen 353 W 353 (421)
T ss_pred e
Confidence 3
No 234
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.043 Score=63.53 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=56.8
Q ss_pred HHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCCChhHH
Q 003302 29 KLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDITKPECR 97 (832)
Q Consensus 29 KLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt~~~~~ 97 (832)
+|++.-..|--..++.+||||=||.|.|++.+|.. ...|+||++++- +.+.|+.|..++.......
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 45544333333457789999999999999999965 459999999962 2466788888887653211
Q ss_pred HHHHHHHhhccCCcccEEEeCCC
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDga 120 (832)
. +....||+|+.|++
T Consensus 357 ------~--~~~~~~d~VvvDPP 371 (432)
T COG2265 357 ------W--WEGYKPDVVVVDPP 371 (432)
T ss_pred ------c--cccCCCCEEEECCC
Confidence 1 01146799999974
No 235
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.013 Score=63.26 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-C--------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-A--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++..||++|+|.|++|..|+++. ..|+||++.+. . ...+++.+++|+........+ .
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~----------~ 95 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA----------Q 95 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc----------C
Confidence 458899999999999999999984 48999999972 1 346799999999876532111 4
Q ss_pred ccEEEeCCCCCCC
Q 003302 112 FDLVLHDGSPNVG 124 (832)
Q Consensus 112 FDlVlsDgapnv~ 124 (832)
++.|++|-+.|.+
T Consensus 96 ~~~vVaNlPY~Is 108 (259)
T COG0030 96 PYKVVANLPYNIS 108 (259)
T ss_pred CCEEEEcCCCccc
Confidence 5999999876554
No 236
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.93 E-value=0.031 Score=50.21 Aligned_cols=95 Identities=22% Similarity=0.264 Sum_probs=57.7
Q ss_pred EEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CC--CC---ceEEEccCCCh--hHHHHHHHHHhhccCCcc
Q 003302 46 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PI--RG---AVSLEQDITKP--ECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 46 VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i--~~---V~~i~gDIt~~--~~~~~l~~~L~~~~~~~F 112 (832)
|+|+|||+|.++ .+....+....++|+|+++.. .. .. +.++.+|.... . +.. ...|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~ 120 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP--------FED--SASF 120 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC--------CCC--CCce
Confidence 999999999987 555554433489999998621 01 11 45666666541 1 110 0257
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
|++.+.... .|.. ....+..+.++|+|||.|++..+...
T Consensus 121 d~~~~~~~~----~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 121 DLVISLLVL----HLLP--------PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eEEeeeeeh----hcCC--------HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 888333211 1111 23566778899999999998766543
No 237
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.92 E-value=0.0081 Score=67.63 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=32.8
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-----------CCCCCceEEEccCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-----------APIRGAVSLEQDIT 92 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-----------~~i~~V~~i~gDIt 92 (832)
.||||+||.|.|+..||... ..|+||++++- +.+.|+.|+.++..
T Consensus 199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 79999999999999999874 58999999952 35778999987653
No 238
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.92 E-value=0.016 Score=62.39 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC--------CCC---CceEEEccCCChhHHHHHHHHHhhc
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA--------PIR---GAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~--------~i~---~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
++++..||++|.|||..|+.+.+. +.+|+||++.| |. ..| ...+++||+....
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d------------ 120 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD------------ 120 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC------------
Confidence 578899999999999999999987 56999999998 32 222 3678899987643
Q ss_pred cCCcccEEEeCCCCCCCC
Q 003302 108 GVRAFDLVLHDGSPNVGG 125 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv~g 125 (832)
...||++++|-+++.++
T Consensus 121 -~P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 121 -LPRFDGCVSNLPYQISS 137 (315)
T ss_pred -CcccceeeccCCccccC
Confidence 15689999998766543
No 239
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.74 E-value=0.053 Score=59.55 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=57.7
Q ss_pred CEEEEEcCCcCH--HH--HHHHHhCC---CCCEEEEEeCCCCC---------------CCC-------------------
Q 003302 44 HAVLDLCAAPGG--WM--QVAVQRVP---VGSLVLGLDLVPIA---------------PIR------------------- 82 (832)
Q Consensus 44 ~~VLDLGcGPGg--~s--q~La~~~p---~~~~ViGVDLsp~~---------------~i~------------------- 82 (832)
-+|+-.||++|- ++ ..+....+ ....|+|+|+++.. .+|
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 689999999996 33 33444332 24579999999410 010
Q ss_pred --------CceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcE
Q 003302 83 --------GAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGT 154 (832)
Q Consensus 83 --------~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~ 154 (832)
.|.|.+.|+.+++. . ..+.||+|+|.- +-. +........++......|+|||+
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~--------~--~~~~fD~I~cRN---vli------yF~~~~~~~vl~~l~~~L~pgG~ 257 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQW--------A--VPGPFDAIFCRN---VMI------YFDKTTQERILRRFVPLLKPDGL 257 (287)
T ss_pred EEChHHHccCEEEcccCCCCCC--------c--cCCCcceeeHhh---HHh------cCCHHHHHHHHHHHHHHhCCCcE
Confidence 13444555544210 0 126789999952 111 11123346788889999999999
Q ss_pred EEE
Q 003302 155 FVT 157 (832)
Q Consensus 155 fV~ 157 (832)
|++
T Consensus 258 L~l 260 (287)
T PRK10611 258 LFA 260 (287)
T ss_pred EEE
Confidence 887
No 240
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.68 E-value=0.14 Score=53.76 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=81.7
Q ss_pred HHHHHHhcCc-hhH---HHHHHHhhhhhcCCCC----CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCc
Q 003302 13 YYRLAKEHGY-RSR---ASWKLVQLDSKFSFLR----SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGA 84 (832)
Q Consensus 13 yy~~Ake~gy-rsR---aafKLiqi~~kf~fl~----~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V 84 (832)
-|+.|-.+|- ..| ++-.|++-........ ..-++||+||-........ .+ --.|+.|||++. .|+|
T Consensus 14 ~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~---~~-~fdvt~IDLns~--~~~I 87 (219)
T PF11968_consen 14 AYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST---SG-WFDVTRIDLNSQ--HPGI 87 (219)
T ss_pred HHHHHHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccc---cC-ceeeEEeecCCC--CCCc
Confidence 3566655554 334 3444444333322211 2368999999855422211 11 235999999983 2333
Q ss_pred eEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcE-----EEEEE
Q 003302 85 VSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGT-----FVTKV 159 (832)
Q Consensus 85 ~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~-----fV~KV 159 (832)
++.|+...+. +....+.||+|.+..-.|+ ++++.. .-..|+.++.+|+|+|. |++-+
T Consensus 88 --~qqDFm~rpl--------p~~~~e~FdvIs~SLVLNf----VP~p~~----RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 88 --LQQDFMERPL--------PKNESEKFDVISLSLVLNF----VPDPKQ----RGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred --eeeccccCCC--------CCCcccceeEEEEEEEEee----CCCHHH----HHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 5677766432 1112378999999765443 333332 24567789999999999 66522
Q ss_pred cCC-------CCHHHHHHHHHHc-ccceEEe
Q 003302 160 FRS-------QDYSSVLYCLKQL-FEKVEVD 182 (832)
Q Consensus 160 Frs-------~d~~~ll~~L~~~-F~~V~~~ 182 (832)
..+ .+...+..+|..+ |..++..
T Consensus 150 P~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 150 PLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 211 1223455566655 7666653
No 241
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.40 E-value=0.18 Score=55.43 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=55.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.++...||.--|-||.++.+...++..+.++|+|-.|.. + ..+++++++++.+.. ..+.....+
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~------~~l~~~~i~ 95 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLA------EALKELGIG 95 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHH------HHHHhcCCC
Confidence 567899999999999999999999988899999999721 2 246888998876643 223333346
Q ss_pred cccEEEeCC
Q 003302 111 AFDLVLHDG 119 (832)
Q Consensus 111 ~FDlVlsDg 119 (832)
.||-|+.|-
T Consensus 96 ~vDGiL~DL 104 (314)
T COG0275 96 KVDGILLDL 104 (314)
T ss_pred ceeEEEEec
Confidence 678887774
No 242
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.11 E-value=0.055 Score=62.87 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=73.2
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCC--CCceE------EEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPI--RGAVS------LEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i--~~V~~------i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
+.|+|+.||.|||+.+|... .|.-+.+.|.... -+|++ +.-|+.. .|.+- ..+||+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE---------~fsTY-PRTYDLl 431 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCE---------AFSTY-PRTYDLL 431 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhcccchhccchhh---------ccCCC-Ccchhhe
Confidence 57999999999998877643 2444445543211 11222 2223221 11111 1678999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEecCCCCCCCCccee
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIY 195 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~KP~sSR~~SaEiy 195 (832)
.+++-+. .+...+.+..+|-.+-++|||||++++.-.. .-...+..++..+--++.++- ...-+...|..
T Consensus 432 HA~~lfs--------~~~~rC~~~~illEmDRILRP~G~~iiRD~~-~vl~~v~~i~~~lrW~~~~~d-~e~g~~~~Eki 501 (506)
T PF03141_consen 432 HADGLFS--------LYKDRCEMEDILLEMDRILRPGGWVIIRDTV-DVLEKVKKIAKSLRWEVRIHD-TEDGPDGPEKI 501 (506)
T ss_pred ehhhhhh--------hhcccccHHHHHHHhHhhcCCCceEEEeccH-HHHHHHHHHHHhCcceEEEEe-cCCCCCCCceE
Confidence 9987432 1223355677788899999999999873110 012233344444434444442 23333446888
Q ss_pred EEEe
Q 003302 196 LLGI 199 (832)
Q Consensus 196 vVc~ 199 (832)
+||+
T Consensus 502 L~~~ 505 (506)
T PF03141_consen 502 LICQ 505 (506)
T ss_pred EEEE
Confidence 8886
No 243
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.03 E-value=0.037 Score=62.18 Aligned_cols=151 Identities=19% Similarity=0.155 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+|..|+|.||+||.-+.+++..+...++|.|+|+.+-. ....+..+.+|++...+. ..+
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~---------~~~ 282 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATP---------EKF 282 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCc---------ccc
Confidence 468899999999999999999999989999999998631 223355567777663211 112
Q ss_pred CcccEEEeCCCCCCCCCchhHHh----------HHhHH---HHHHHHHHHhh--cccCcEEEEEEcCCCCHHHHHHHHHH
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAM----------SQNAL---VIDSVKLATQF--LAPKGTFVTKVFRSQDYSSVLYCLKQ 174 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~----------~q~~L---~~~aLk~A~~~--LkpGG~fV~KVFrs~d~~~ll~~L~~ 174 (832)
..+-.|++|+++..+|.++...+ ....| +..++..|+.+ ++.=-+-.|.+++...-..+...+++
T Consensus 283 ~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~k~vvystcs~~reene~vv~d~l~~ 362 (413)
T KOG2360|consen 283 RDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNLKRLVYSTCSLHREENEQVVQEVLQQ 362 (413)
T ss_pred cceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCchhheeeecchhhhhhhhHHHHHHHhh
Confidence 45689999988776665432111 11111 12233333332 12112233456666655555566654
Q ss_pred c--ccceEE--ecCCCCCCCCcceeEEEeec
Q 003302 175 L--FEKVEV--DKPAASRSASAEIYLLGIKY 201 (832)
Q Consensus 175 ~--F~~V~~--~KP~sSR~~SaEiyvVc~gf 201 (832)
- |..+.. +-|-+++.+ .+-|-+.++.
T Consensus 363 ~p~~~~l~~kK~~p~w~~rg-~~~~~~~e~~ 392 (413)
T KOG2360|consen 363 NPDAKRLAPKKVLPAWPHRG-LSTFSGAEHC 392 (413)
T ss_pred ChhHhhhchhhcchhhhhcC-Cccccccccc
Confidence 4 334433 446666655 4455444443
No 244
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.1 Score=56.46 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=73.6
Q ss_pred chhHHHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEc
Q 003302 22 YRSRASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQ 89 (832)
Q Consensus 22 yrsRaafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~g 89 (832)
|-.-.++.|..++ +.||.+||+-|+|.|+++-++++.+++.++++.+|.-... .++ +|++..-
T Consensus 90 Yt~Dia~I~~~L~-----i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hr 164 (314)
T KOG2915|consen 90 YTPDIAMILSMLE-----IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHR 164 (314)
T ss_pred ecccHHHHHHHhc-----CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEe
Confidence 4445555554443 4799999999999999999999999999999999996532 233 5788888
Q ss_pred cCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 90 DITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 90 DIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+...... ... ..+|.|+.|.+. -|. ++-.|..+|+.+|.-+|
T Consensus 165 DVc~~GF~------~ks---~~aDaVFLDlPa----Pw~------------AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 165 DVCGSGFL------IKS---LKADAVFLDLPA----PWE------------AIPHAAKILKDEGGRLC 207 (314)
T ss_pred ecccCCcc------ccc---cccceEEEcCCC----hhh------------hhhhhHHHhhhcCceEE
Confidence 88765432 112 556999999741 121 23345668888775444
No 245
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.87 E-value=0.097 Score=64.27 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhC---C--------------------------------------CCCEEEEEeCCCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRV---P--------------------------------------VGSLVLGLDLVPIA 79 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~---p--------------------------------------~~~~ViGVDLsp~~ 79 (832)
.++..++|.+||+|.++..++... + ....|+|+|+++-.
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 467899999999999997776421 1 12369999999721
Q ss_pred -----------CCCC-ceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHh
Q 003302 80 -----------PIRG-AVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQ 147 (832)
Q Consensus 80 -----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~ 147 (832)
.+.+ |.+.++|+++.... . ..+.||+|++|++.. ..+ .+......| ...|...++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~------~---~~~~~d~IvtNPPYg--~r~-~~~~~l~~l-Y~~lg~~lk 335 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNP------L---PKGPTGLVISNPPYG--ERL-GEEPALIAL-YSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccc------c---ccCCCCEEEECCCCc--Ccc-CchHHHHHH-HHHHHHHHH
Confidence 2333 67889999874321 0 114579999997532 111 111111112 123444555
Q ss_pred hcccCcEEEE
Q 003302 148 FLAPKGTFVT 157 (832)
Q Consensus 148 ~LkpGG~fV~ 157 (832)
.+.+|+.+++
T Consensus 336 ~~~~g~~~~l 345 (702)
T PRK11783 336 QQFGGWNAAL 345 (702)
T ss_pred HhCCCCeEEE
Confidence 5558888865
No 246
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.65 E-value=0.11 Score=56.57 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=35.4
Q ss_pred HHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 30 LVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 30 Liqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
|.+|..+..-+.| .+|||+|||||..+..+...++.-..+++||.++
T Consensus 22 l~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~ 68 (274)
T PF09243_consen 22 LSELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP 68 (274)
T ss_pred HHHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhcCceeeeeecCCH
Confidence 4455544433444 5899999999998888888777556799999997
No 247
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.60 E-value=0.077 Score=57.55 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=61.3
Q ss_pred CEEEEEcCCcC---HHHHHHHHhCCCCCEEEEEeCCCCC---------CCCC--ceEEEccCCChhHHH---HHHHHHhh
Q 003302 44 HAVLDLCAAPG---GWMQVAVQRVPVGSLVLGLDLVPIA---------PIRG--AVSLEQDITKPECRA---RVKKVMEE 106 (832)
Q Consensus 44 ~~VLDLGcGPG---g~sq~La~~~p~~~~ViGVDLsp~~---------~i~~--V~~i~gDIt~~~~~~---~l~~~L~~ 106 (832)
..+||||||-- ..=+++... .+.++|+-||..|+. .-++ ..++++|++++...- .+...|.-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~-~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRV-APDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH--TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhh-CCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 56999999843 333444444 458999999999852 2355 789999999976431 12222221
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHccc
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFE 177 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~ 177 (832)
..++=++++.. .+|..|.-. ...++......|.||.+|+++.+.......-...+..+|.
T Consensus 149 --~rPVavll~~v-----Lh~v~D~~d----p~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~ 208 (267)
T PF04672_consen 149 --DRPVAVLLVAV-----LHFVPDDDD----PAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYA 208 (267)
T ss_dssp --TS--EEEECT------GGGS-CGCT----HHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHH
T ss_pred --CCCeeeeeeee-----eccCCCccC----HHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 12334444432 134444222 2356677889999999999988776543333344444443
No 248
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.59 E-value=0.1 Score=56.78 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=61.6
Q ss_pred CCEEEEEcCCcCH----HHHHHHHhCCC----CCEEEEEeCCCCC---------C-------C-----------------
Q 003302 43 SHAVLDLCAAPGG----WMQVAVQRVPV----GSLVLGLDLVPIA---------P-------I----------------- 81 (832)
Q Consensus 43 g~~VLDLGcGPGg----~sq~La~~~p~----~~~ViGVDLsp~~---------~-------i----------------- 81 (832)
.-+|.-.||++|- .+..|.+.++. ...|+|.||+.-. + +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4689999999995 55666676652 5689999998310 0 0
Q ss_pred -------CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcE
Q 003302 82 -------RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGT 154 (832)
Q Consensus 82 -------~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~ 154 (832)
..|.|-+.|+.+... ..+.||+|+|- ||-- ..+. .+...++...+..|+|||.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-----------~~~~fD~IfCR---NVLI--YFd~----~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-----------FLGKFDLIFCR---NVLI--YFDE----ETQERILRRFADSLKPGGL 236 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-----------ccCCCCEEEEc---ceEE--eeCH----HHHHHHHHHHHHHhCCCCE
Confidence 124444555554320 22679999996 3211 1222 3345677788999999999
Q ss_pred EEE
Q 003302 155 FVT 157 (832)
Q Consensus 155 fV~ 157 (832)
|++
T Consensus 237 Lfl 239 (268)
T COG1352 237 LFL 239 (268)
T ss_pred EEE
Confidence 997
No 249
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.52 E-value=0.043 Score=57.64 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=43.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCC-CceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIR-GAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~-~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
..+|||.-||-||-+...+.. .+.|++||++|+. .+| .|+|+|||+.+.-. .++-.+ -
T Consensus 95 ~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~------~lq~~K-~ 164 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLAS------KLKADK-I 164 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHH------HHhhhh-h
Confidence 356777777777765545444 3479999999852 234 58999999987421 121111 2
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|+|+..|++.
T Consensus 165 ~~~~vf~sppwg 176 (263)
T KOG2730|consen 165 KYDCVFLSPPWG 176 (263)
T ss_pred eeeeeecCCCCC
Confidence 357888766543
No 250
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.32 E-value=0.093 Score=58.09 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=55.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+|..+||.=||-||-+..++..++. ++|+|+|.++.. +. .++.++++++.+.. ..+.....
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~------~~l~~~~~ 90 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFF------EHLDELLV 90 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHH------HHHHhcCC
Confidence 357889999999999999999998874 899999999732 22 36888898887643 22322223
Q ss_pred CcccEEEeCC
Q 003302 110 RAFDLVLHDG 119 (832)
Q Consensus 110 ~~FDlVlsDg 119 (832)
..||.|+.|-
T Consensus 91 ~~vDgIl~DL 100 (305)
T TIGR00006 91 TKIDGILVDL 100 (305)
T ss_pred CcccEEEEec
Confidence 5679999985
No 251
>PRK11524 putative methyltransferase; Provisional
Probab=94.18 E-value=0.16 Score=55.48 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=48.5
Q ss_pred ceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCC-------CchhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 84 AVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG-------AWAQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 84 V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g-------~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
..++++|+... + ..+.. ++||+|++|++.+.+. .|....+ ...+...|..+.++|+|||.|+
T Consensus 9 ~~i~~gD~~~~-----l-~~l~~---~siDlIitDPPY~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~rvLK~~G~i~ 77 (284)
T PRK11524 9 KTIIHGDALTE-----L-KKIPS---ESVDLIFADPPYNIGKNFDGLIEAWKEDLF--IDWLYEWIDECHRVLKKQGTMY 77 (284)
T ss_pred CEEEeccHHHH-----H-Hhccc---CcccEEEECCCcccccccccccccccHHHH--HHHHHHHHHHHHHHhCCCcEEE
Confidence 45677887652 1 22333 6789999999765421 2222222 2445678899999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHcc
Q 003302 157 TKVFRSQDYSSVLYCLKQLF 176 (832)
Q Consensus 157 ~KVFrs~d~~~ll~~L~~~F 176 (832)
+ ++.......+...+...|
T Consensus 78 i-~~~~~~~~~~~~~~~~~f 96 (284)
T PRK11524 78 I-MNSTENMPFIDLYCRKLF 96 (284)
T ss_pred E-EcCchhhhHHHHHHhcCc
Confidence 8 344333333333344333
No 252
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.16 E-value=0.098 Score=51.58 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=50.5
Q ss_pred EEEEEeCCCCC-----------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhH
Q 003302 69 LVLGLDLVPIA-----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNA 136 (832)
Q Consensus 69 ~ViGVDLsp~~-----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~ 136 (832)
+|+|+|+++.+ .+ .+|++++..-.... ..++. +++|+|+-|-..-.||.. .......
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~------~~i~~---~~v~~~iFNLGYLPggDk--~i~T~~~ 69 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD------EYIPE---GPVDAAIFNLGYLPGGDK--SITTKPE 69 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG------GT--S-----EEEEEEEESB-CTS-T--TSB--HH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH------hhCcc---CCcCEEEEECCcCCCCCC--CCCcCcH
Confidence 58999999621 12 35888877655432 22222 467999988643334432 2233445
Q ss_pred HHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 137 LVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 137 L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
.++.+|..|+.+|+|||.+++.++.+..
T Consensus 70 TTl~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 70 TTLKALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred HHHHHHHHHHHhhccCCEEEEEEeCCCC
Confidence 6789999999999999999999998765
No 253
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.12 E-value=0.13 Score=54.11 Aligned_cols=94 Identities=21% Similarity=0.214 Sum_probs=57.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CC-CCC-ceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------AP-IRG-AVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~-i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
-.++||+|||-|-.|..+. +|.--.|--||.++- .. .++ ..+++.-+.+.. +. .+.
T Consensus 56 ~~~alDcGAGIGRVTk~lL--l~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~---------P~--~~~ 122 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLL--LPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT---------PE--EGK 122 (218)
T ss_dssp -SEEEEET-TTTHHHHHTC--CCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------------TT-
T ss_pred cceEEecccccchhHHHHH--HHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc---------CC--CCc
Confidence 4689999999999997553 233447777777751 01 123 344555444321 11 167
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
||+|.+- |+.-+..-..| ...|+.|...|+|||.+|+|
T Consensus 123 YDlIW~Q--------W~lghLTD~dl-v~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 123 YDLIWIQ--------WCLGHLTDEDL-VAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EEEEEEE--------S-GGGS-HHHH-HHHHHHHHHHEEEEEEEEEE
T ss_pred EeEEEeh--------HhhccCCHHHH-HHHHHHHHHhCcCCcEEEEE
Confidence 8999984 77666554444 46788999999999999997
No 254
>PRK10742 putative methyltransferase; Provisional
Probab=94.07 E-value=0.072 Score=57.22 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C----------C-CCceEEEccCCChhHHH
Q 003302 41 RSSH--AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P----------I-RGAVSLEQDITKPECRA 98 (832)
Q Consensus 41 ~~g~--~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~----------i-~~V~~i~gDIt~~~~~~ 98 (832)
++|. +|||+.||.|.-+.+++.+ ++.|++||-+|.. . + .++..+++|..+.
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~---- 157 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA---- 157 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH----
Confidence 4555 8999999999999999987 6689999999732 0 1 2355556665432
Q ss_pred HHHHHHhhccCCcccEEEeCCCC
Q 003302 99 RVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 99 ~l~~~L~~~~~~~FDlVlsDgap 121 (832)
|.... ..||+|+.|+++
T Consensus 158 -----L~~~~-~~fDVVYlDPMf 174 (250)
T PRK10742 158 -----LTDIT-PRPQVVYLDPMF 174 (250)
T ss_pred -----HhhCC-CCCcEEEECCCC
Confidence 22211 468999999864
No 255
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.51 E-value=0.22 Score=55.88 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=69.5
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC-----------------CCCCceEEEccCCChhHHHHHH
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA-----------------PIRGAVSLEQDITKPECRARVK 101 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~-----------------~i~~V~~i~gDIt~~~~~~~l~ 101 (832)
+....+||=||.|.|--...+.++ |.-.+|+-||+.| |. .-|+|+++..|..++
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w------- 358 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW------- 358 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH-------
Confidence 345678999999999888777765 5467999999998 21 125688888887653
Q ss_pred HHHhhccCCcccEEEeCCC-CCC---CCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 102 KVMEEHGVRAFDLVLHDGS-PNV---GGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 102 ~~L~~~~~~~FDlVlsDga-pnv---~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
++.. ...||+|+.|-+ |+. +-.++. ....++.+.|+++|.||+..-.+
T Consensus 359 --lr~a-~~~fD~vIVDl~DP~tps~~rlYS~----------eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 359 --LRTA-ADMFDVVIVDLPDPSTPSIGRLYSV----------EFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred --HHhh-cccccEEEEeCCCCCCcchhhhhhH----------HHHHHHHHhcCcCceEEEecCCC
Confidence 2222 257899999963 221 112222 23346789999999999854333
No 256
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.46 E-value=0.12 Score=56.15 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=64.4
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC-CC---CCCc-eEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI-AP---IRGA-VSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~-~~---i~~V-~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+..|..++|.|||-|-.+.. . +.+.++|+|++.. .. -.+. ....+|+...+.+ . .+||.
T Consensus 43 ~~~gsv~~d~gCGngky~~~---~--p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~--------~---~s~d~ 106 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV---N--PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFR--------E---ESFDA 106 (293)
T ss_pred cCCcceeeecccCCcccCcC---C--CcceeeecchhhhhccccccCCCceeehhhhhcCCCC--------C---Ccccc
Confidence 35689999999999975321 1 3568999999863 22 2233 4566677664321 1 56788
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+++-.. ..++.....-..++....+.|+|||...+-++
T Consensus 107 ~lsiav--------ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 107 ALSIAV--------IHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred chhhhh--------hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 876532 22344445557889999999999999877554
No 257
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.38 E-value=0.13 Score=60.48 Aligned_cols=123 Identities=16% Similarity=0.261 Sum_probs=70.6
Q ss_pred chhHHHHHHH-hhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCCC---CCEEEEEeCCCC-------C-CCCCce----
Q 003302 22 YRSRASWKLV-QLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVPV---GSLVLGLDLVPI-------A-PIRGAV---- 85 (832)
Q Consensus 22 yrsRaafKLi-qi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p~---~~~ViGVDLsp~-------~-~i~~V~---- 85 (832)
|-.|+.-+|+ ++.. ..+..+|.|-|||+||+...+..++.. ...++|.++++. . -+.++.
T Consensus 169 yTP~~v~~liv~~l~----~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 169 YTPREVSELIVELLD----PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CChHHHHHHHHHHcC----CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 5566666655 3321 246779999999999998888877753 367999998752 1 122332
Q ss_pred EEEccCC-ChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHH-----------h-----HHhHHHHHHHHHHHhh
Q 003302 86 SLEQDIT-KPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEA-----------M-----SQNALVIDSVKLATQF 148 (832)
Q Consensus 86 ~i~gDIt-~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~-----------~-----~q~~L~~~aLk~A~~~ 148 (832)
...+|-. ++..-. ....+.||+|+++++.+.. .|.... + .... -...+..+...
T Consensus 245 i~~~dtl~~~~~~~-------~~~~~~~D~viaNPPf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~af~~h~~~~ 315 (489)
T COG0286 245 IRHGDTLSNPKHDD-------KDDKGKFDFVIANPPFSGK-GWGGDLLESEQDERFFFYGVFPTKNSA-DLAFLQHILYK 315 (489)
T ss_pred ccccccccCCcccc-------cCCccceeEEEeCCCCCcc-ccccccccccccccccccCCCCCCCch-HHHHHHHHHHh
Confidence 2233322 221000 0112678999999976622 232211 0 0011 14566778888
Q ss_pred cccCcEEEE
Q 003302 149 LAPKGTFVT 157 (832)
Q Consensus 149 LkpGG~fV~ 157 (832)
|+|||+..+
T Consensus 316 l~~~g~aai 324 (489)
T COG0286 316 LKPGGRAAI 324 (489)
T ss_pred cCCCceEEE
Confidence 999886554
No 258
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.26 E-value=0.12 Score=53.66 Aligned_cols=94 Identities=22% Similarity=0.187 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--C------CC--CceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--P------IR--GAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--~------i~--~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.|.+|||+|+|+|--+.+++... ...|++.|+.|.. . .. ++.+...|+... ...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~--------------~~~ 142 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGS--------------PPA 142 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCC--------------Ccc
Confidence 58999999999999888777652 4578888888731 1 11 244555665541 266
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
||+|+..-- .+++. . ....+. ....|+..|.-|+ ||.+.+
T Consensus 143 ~Dl~LagDl-----fy~~~--~----a~~l~~-~~~~l~~~g~~vl-vgdp~R 182 (218)
T COG3897 143 FDLLLAGDL-----FYNHT--E----ADRLIP-WKDRLAEAGAAVL-VGDPGR 182 (218)
T ss_pred eeEEEeece-----ecCch--H----HHHHHH-HHHHHHhCCCEEE-EeCCCC
Confidence 799997421 11111 1 112233 5566667777776 776654
No 259
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=93.14 E-value=0.29 Score=54.80 Aligned_cols=96 Identities=15% Similarity=0.245 Sum_probs=64.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC----CCC-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI----API-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~----~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
|..-...+|+|+|.|..+-.+....| ....+=+|+..+ ..+ |+|.++-+|.... + ..-|+
T Consensus 175 f~~v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~-------------P~~da 239 (342)
T KOG3178|consen 175 FKGVNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-T-------------PKGDA 239 (342)
T ss_pred cccCceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhcCCcceeccccccc-C-------------CCcCe
Confidence 33457899999999999977777766 333333344332 134 8888888887652 1 12277
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
|+.- .+-++|.-+. |...|+.|...|.|||.++++-
T Consensus 240 I~mk---WiLhdwtDed------cvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 240 IWMK---WILHDWTDED------CVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred EEEE---eecccCChHH------HHHHHHHHHHhCCCCCEEEEEe
Confidence 7753 2334454333 5688999999999999999853
No 260
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.08 E-value=0.14 Score=55.14 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.++..|||+|+|+|.||..|+... ..|++|++++. ...+++.++.+|+........+ ...
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~--------~~~ 97 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL--------KNQ 97 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC--------SSS
T ss_pred CCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh--------cCC
Confidence 378999999999999999999985 59999999972 1246899999999886533211 123
Q ss_pred ccEEEeCCC
Q 003302 112 FDLVLHDGS 120 (832)
Q Consensus 112 FDlVlsDga 120 (832)
..+|+++.+
T Consensus 98 ~~~vv~NlP 106 (262)
T PF00398_consen 98 PLLVVGNLP 106 (262)
T ss_dssp EEEEEEEET
T ss_pred ceEEEEEec
Confidence 467887754
No 261
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=92.93 E-value=0.14 Score=50.02 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhC---CCCCEEEEEeCCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRV---PVGSLVLGLDLVPI 78 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~---p~~~~ViGVDLsp~ 78 (832)
.+...|+|+|||-|.++++|+.++ ..+..|+|||.++-
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNES 64 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcH
Confidence 567899999999999999999832 24679999999873
No 262
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.91 E-value=0.86 Score=48.07 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=74.9
Q ss_pred cCchhHHHHHHHhhhhhcCCCC-C-CCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCC-----------C------
Q 003302 20 HGYRSRASWKLVQLDSKFSFLR-S-SHAVLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPI-----------A------ 79 (832)
Q Consensus 20 ~gyrsRaafKLiqi~~kf~fl~-~-g~~VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~-----------~------ 79 (832)
.+|--|-|-.|.| +-|.++. . .-.+-|-|||.|+...++.-..+. -..|+|-|+++- .
T Consensus 29 p~FPVRLAsEi~q--R~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~ 106 (246)
T PF11599_consen 29 PAFPVRLASEIFQ--RALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLE 106 (246)
T ss_dssp ----HHHHHHHHH--HHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHH
T ss_pred CCccHHHHHHHHH--HHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHH
Confidence 3456677777776 3466663 2 346999999999998888765432 235999999831 0
Q ss_pred ------------------------------------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCC
Q 003302 80 ------------------------------------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNV 123 (832)
Q Consensus 80 ------------------------------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv 123 (832)
+..-....+.|++++.....+. .. ...|+|+.|.+..-
T Consensus 107 ~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~---~~---~~~diViTDlPYG~ 180 (246)
T PF11599_consen 107 ARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD---AG---FTPDIVITDLPYGE 180 (246)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH---TT------SEEEEE--CCC
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc---cC---CCCCEEEecCCCcc
Confidence 0112557889999976543221 11 23499999986444
Q ss_pred CCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcccceEEec
Q 003302 124 GGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDK 183 (832)
Q Consensus 124 ~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F~~V~~~K 183 (832)
...|.-+ .+..=+...|.....+| |++.+|+-+-++.-.. ...|..++.+|
T Consensus 181 ~t~W~g~--~~~~p~~~ml~~l~~vL-p~~sVV~v~~k~~Ki~------~~~~r~~~rlK 231 (246)
T PF11599_consen 181 MTSWQGE--GSGGPVAQMLNSLAPVL-PERSVVAVSDKGRKIP------HDRFRRLERLK 231 (246)
T ss_dssp SSSTTS-----HHHHHHHHHHHHCCS--TT-EEEEEESSSS---------TTS--SEEEE
T ss_pred cccccCC--CCCCcHHHHHHHHHhhC-CCCcEEEEecCCcccc------cchhHHHHHHh
Confidence 4457553 11122356677788899 6666666454554321 24455555543
No 263
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.86 E-value=0.11 Score=49.87 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=36.8
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCCceEEEccCCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRGAVSLEQDITK 93 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~ 93 (832)
+|||+|||.|.++..++...+ .++|++||.+|-. .++++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999988765 5699999999721 23456666666654
No 264
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.88 E-value=0.63 Score=52.94 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCC-------------------------------CC-------EEEEEeCCC-CC--
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPV-------------------------------GS-------LVLGLDLVP-IA-- 79 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~-------------------------------~~-------~ViGVDLsp-~~-- 79 (832)
.++..++|-=||+|.++.-+|...+. .+ .++|+|+++ +.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 35578999999999999887765421 01 477999997 21
Q ss_pred --------CCCC-ceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcc
Q 003302 80 --------PIRG-AVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLA 150 (832)
Q Consensus 80 --------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~Lk 150 (832)
.+.+ |+|.++|++++... ...+|+|+||++. |....+......|.......+.+.+.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~-----------~~~~gvvI~NPPY---GeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEP-----------LEEYGVVISNPPY---GERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCC-----------CCcCCEEEeCCCc---chhcCChhhHHHHHHHHHHHHHHHhc
Confidence 2333 78899999875321 1567999999852 33333332222244444455557777
Q ss_pred cCcEEEEE
Q 003302 151 PKGTFVTK 158 (832)
Q Consensus 151 pGG~fV~K 158 (832)
-.+.+|+.
T Consensus 336 ~ws~~v~t 343 (381)
T COG0116 336 GWSRYVFT 343 (381)
T ss_pred CCceEEEE
Confidence 77777663
No 265
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.02 E-value=1.1 Score=45.27 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=70.0
Q ss_pred EcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----C------------CCCceEE-EccCCChhHHHHHHHHHhhccCCc
Q 003302 49 LCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----P------------IRGAVSL-EQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 49 LGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----~------------i~~V~~i-~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+|-|--+|+..|+...+.+..|+|.-+.... . .++|.++ ..|+|.+... + ......
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~------~-~~~~~~ 75 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKH------F-RLKNQR 75 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccccc------c-cccCCc
Confidence 5666666778888887656678887665421 1 2345444 4488875422 1 011277
Q ss_pred ccEEEeCCCCCCCCC--c-hhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCH
Q 003302 112 FDLVLHDGSPNVGGA--W-AQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDY 165 (832)
Q Consensus 112 FDlVlsDgapnv~g~--w-~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~ 165 (832)
||.|+-|- |.+|+. . .........|+...+..|..+|+++|.+.+.+..++.|
T Consensus 76 FDrIiFNF-PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py 131 (166)
T PF10354_consen 76 FDRIIFNF-PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY 131 (166)
T ss_pred CCEEEEeC-CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC
Confidence 89999996 444411 1 11111334778899999999999999999988877654
No 266
>PRK13699 putative methylase; Provisional
Probab=90.70 E-value=0.63 Score=49.41 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=45.2
Q ss_pred eEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCC------chhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 85 VSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGA------WAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 85 ~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~------w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
.++++|..+ +...|++ +++|+|+.||+.+.+.. +..+ ........++..+.++|+|||.|++
T Consensus 3 ~l~~gD~le------~l~~lpd---~SVDLIiTDPPY~i~~~~~~~~~~~~~--~~~ew~~~~l~E~~RVLKpgg~l~i- 70 (227)
T PRK13699 3 RFILGNCID------VMARFPD---NAVDFILTDPPYLVGFRDRQGRTIAGD--KTDEWLQPACNEMYRVLKKDALMVS- 70 (227)
T ss_pred eEEechHHH------HHHhCCc---cccceEEeCCCcccccccCCCcccccc--cHHHHHHHHHHHHHHHcCCCCEEEE-
Confidence 455666543 2223444 66799999997664211 1111 1224456788999999999999986
Q ss_pred EcCCCC-HHHHHHHHHH
Q 003302 159 VFRSQD-YSSVLYCLKQ 174 (832)
Q Consensus 159 VFrs~d-~~~ll~~L~~ 174 (832)
|.+.. ...+...+..
T Consensus 71 -f~~~~~~~~~~~al~~ 86 (227)
T PRK13699 71 -FYGWNRVDRFMAAWKN 86 (227)
T ss_pred -EeccccHHHHHHHHHH
Confidence 33322 3344444443
No 267
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=90.48 E-value=1.9 Score=44.85 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=67.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC---CCCCEEEEEeCCC--CC----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV---PVGSLVLGLDLVP--IA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~---p~~~~ViGVDLsp--~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
...|++.|...||-+...|..| +....|+|||++- .. ..|+|.|++++-+++.....++..-..-+ -=
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~---kI 146 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYP---KI 146 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCC---cE
Confidence 4689999999999766655543 3335899998873 32 36899999999999876665554322211 12
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.|. .+..+ .+++.|++...+|..|-++|+
T Consensus 147 fvilDs------dHs~~------hvLAel~~~~pllsaG~Y~vV 178 (237)
T COG3510 147 FVILDS------DHSME------HVLAELKLLAPLLSAGDYLVV 178 (237)
T ss_pred EEEecC------CchHH------HHHHHHHHhhhHhhcCceEEE
Confidence 344442 22232 356778888889999999986
No 268
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.56 E-value=1.3 Score=47.62 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=45.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CC----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
|.+|| |.|-+-.+..++........|+-+|+.. +. .++ +.+++.|+..+ |+..-.+.
T Consensus 45 gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~---------LP~~~~~~ 112 (243)
T PF01861_consen 45 GKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDP---------LPEELRGK 112 (243)
T ss_dssp T-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS------------TTTSS-
T ss_pred CCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEeccccc---------CCHHHhcC
Confidence 56776 4456666555554444456899999986 21 244 88899999885 22223388
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQ 163 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~ 163 (832)
||++++||+ |-.+.+ . -.+..+...|+.-|..++-.|...
T Consensus 113 fD~f~TDPP------yT~~G~---~---LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 113 FDVFFTDPP------YTPEGL---K---LFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp BSEEEE---------SSHHHH---H---HHHHHHHHTB-STT-EEEEEE-TT
T ss_pred CCEEEeCCC------CCHHHH---H---HHHHHHHHHhCCCCceEEEEEecC
Confidence 999999985 222222 1 234567788887664443344433
No 269
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=89.25 E-value=0.74 Score=58.73 Aligned_cols=86 Identities=22% Similarity=0.310 Sum_probs=54.6
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE-cCCCCHHHHHHHHHHc---ccceEEecCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV-FRSQDYSSVLYCLKQL---FEKVEVDKPA 185 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV-Frs~d~~~ll~~L~~~---F~~V~~~KP~ 185 (832)
|.|.+|.||.--...|.-...+. ..+....+..|+.+..+||.+|+|+ |.... -+-|+++++ |..+.++||.
T Consensus 568 Gtf~fVYSDVDQV~dg~~dl~As--~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~--vW~~if~~~s~~~~~~~ivKPl 643 (1289)
T PF06016_consen 568 GTFTFVYSDVDQVQDGGDDLVAS--NRAAISQLDVALQMTTAGGSTVVKINFPTRA--VWTQIFRQYSPRFTSYHIVKPL 643 (1289)
T ss_dssp --EEEEEEE-----SSTTTHHHH--HHHHHHHHHHHHHHEEEEEEEEEEESS--CC--HHHHHHHHCCCCECEEEEEEEE
T ss_pred CceEEEEecchhhccCCcchhhh--hHHHHHHHHHHHHhhcCCceEEEEEcCCChH--HHHHHHHHhccccceeeEecce
Confidence 88999999974333333334333 3455677889999999999999998 55544 234556655 8889999998
Q ss_pred CCCCCCcceeEEEeecc
Q 003302 186 ASRSASAEIYLLGIKYK 202 (832)
Q Consensus 186 sSR~~SaEiyvVc~gfk 202 (832)
-.. |.|+|+| .+.+
T Consensus 644 I~N--NvEvflv-~~~~ 657 (1289)
T PF06016_consen 644 IVN--NVEVFLV-FGGR 657 (1289)
T ss_dssp SSS--S--EEEE-ECEC
T ss_pred eec--ceEEEEE-EEee
Confidence 754 5799999 4444
No 270
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=88.40 E-value=0.76 Score=51.09 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhc-c
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEH-G 108 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~-~ 108 (832)
..++..+||.-.|.||.+..++..+|. +.|+|+|..|.. + -.++.++++++.+... .+... .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~------~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE------YLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH------HHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH------HHHHccC
Confidence 467889999999999999999999886 899999999731 2 2468999999887542 23333 3
Q ss_pred CCcccEEEeCC
Q 003302 109 VRAFDLVLHDG 119 (832)
Q Consensus 109 ~~~FDlVlsDg 119 (832)
...||-|+.|-
T Consensus 91 ~~~~dgiL~DL 101 (310)
T PF01795_consen 91 INKVDGILFDL 101 (310)
T ss_dssp TS-EEEEEEE-
T ss_pred CCccCEEEEcc
Confidence 36789999985
No 271
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=88.39 E-value=0.59 Score=50.93 Aligned_cols=97 Identities=21% Similarity=0.221 Sum_probs=58.5
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
+||||+||.||++.-+... + -..|+++|+++.. ..++. ++++||++..... + ...||+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~-----~----~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKD-----F----IPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhh-----c----CCCCCEEEeC
Confidence 6999999999998877654 2 3468899999732 23443 5778988754321 1 1457999998
Q ss_pred CCCCCCC-Cc----hhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 119 GSPNVGG-AW----AQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 119 gapnv~g-~w----~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+++...+ .. ..+. ...|....++.+ ..++|- +|++
T Consensus 70 pPCq~fS~ag~~~~~~d~--r~~L~~~~~~~i-~~~~P~-~~v~ 109 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDT--RGTLFFEIIRIL-KEKKPK-YFLL 109 (275)
T ss_pred CCChhhhHHhhcCCCCCc--hHHHHHHHHHHH-HhcCCC-EEEE
Confidence 7644211 11 1111 224555555544 455776 4444
No 272
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=87.88 E-value=0.18 Score=57.26 Aligned_cols=95 Identities=22% Similarity=0.182 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC-----------CCCC-ceEEEccCCChhHHHHHHHHHhhcc
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA-----------PIRG-AVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~-----------~i~~-V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.++..++|+|||-|+.+.+++..- .+.++|++.++.. .+.+ +.++.+|+-..+ +.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~--------fed-- 176 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP--------FED-- 176 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC--------CCc--
Confidence 567789999999999999998874 4689999998632 1111 223334443321 111
Q ss_pred CCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 109 VRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
..||.|-+.-+ +.+.++ ...++..+.++|+|||.++++.
T Consensus 177 -n~fd~v~~ld~----~~~~~~-------~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 177 -NTFDGVRFLEV----VCHAPD-------LEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred -cccCcEEEEee----cccCCc-------HHHHHHHHhcccCCCceEEeHH
Confidence 45677665421 111122 2456778999999999999854
No 273
>PRK06398 aldose dehydrogenase; Validated
Probab=87.57 E-value=8.8 Score=40.65 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=49.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++.+... ...+.++++|+++......+...+.. ..+.+|+|+++...
T Consensus 6 gk~vlItGas-~gIG~~ia~~l~~~G~~Vi~~~r~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~-~~~~id~li~~Ag~ 82 (258)
T PRK06398 6 DKVAIVTGGS-QGIGKAVVNRLKEEGSNVINFDIKEPS-YNDVDYFKVDVSNKEQVIKGIDYVIS-KYGRIDILVNNAGI 82 (258)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCccc-cCceEEEEccCCCHHHHHHHHHHHHH-HcCCCCEEEECCCC
Confidence 5788888865 55555555444 245689988876532 23578899999997655444443322 12567999998753
No 274
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.51 E-value=6.1 Score=41.91 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCcC-HHHHHHHHhCC-CCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPG-GWMQVAVQRVP-VGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPG-g~sq~La~~~p-~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++.| |++..++..+- .+..|+.++.+.-. .+..+.++++|+++......+...+... ++
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~g 87 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEE-WG 87 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHH-cC
Confidence 4678999999984 77776665542 35677777766311 1234567899999987665555444322 26
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+++++...
T Consensus 88 ~ld~lv~nAg~ 98 (258)
T PRK07533 88 RLDFLLHSIAF 98 (258)
T ss_pred CCCEEEEcCcc
Confidence 78999999753
No 275
>PRK06179 short chain dehydrogenase; Provisional
Probab=86.95 E-value=9.3 Score=40.42 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=51.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCC--CCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVP--IAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp--~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
+..||=.|| +|+++..++..+ ..+..|++++.++ .....++.++++|+++......+...+.. ..+.+|+|+++.
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~-~~g~~d~li~~a 81 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIA-RAGRIDVLVNNA 81 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHH-hCCCCCEEEECC
Confidence 456777775 577777766544 2356898888765 23455788999999997655444433322 236679999998
Q ss_pred CCC
Q 003302 120 SPN 122 (832)
Q Consensus 120 apn 122 (832)
.+.
T Consensus 82 g~~ 84 (270)
T PRK06179 82 GVG 84 (270)
T ss_pred CCC
Confidence 653
No 276
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.66 E-value=9.6 Score=40.84 Aligned_cols=79 Identities=14% Similarity=-0.009 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhCC-CCCEEEEEeCCCC--------C-CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRVP-VGSLVLGLDLVPI--------A-PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~p-~~~~ViGVDLsp~--------~-~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++. +|++..++..+. .+..|+.++.+.- . ..+.+.++++|+++......+...+.. .++
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~g 83 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGK-VWP 83 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHh-hcC
Confidence 367888899987 377665555442 3567777765421 0 124466789999998766555544432 236
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+++++...
T Consensus 84 ~iD~linnAg~ 94 (262)
T PRK07984 84 KFDGFVHSIGF 94 (262)
T ss_pred CCCEEEECCcc
Confidence 78999999853
No 277
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=86.63 E-value=3.7 Score=44.92 Aligned_cols=45 Identities=27% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHhhhhhcCC---CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 30 LVQLDSKFSF---LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 30 Liqi~~kf~f---l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
+-+|...|.- -....+||=-|||-|.++--+|.+ +-.+.|++.|.
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~ 88 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSY 88 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchH
Confidence 3345554431 123578999999999999888876 56899999984
No 278
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.51 E-value=2.3 Score=46.26 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=53.9
Q ss_pred HHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCC----CCCEEEEEeCCCCC--------CC---CCceEEEccCCC
Q 003302 29 KLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP----VGSLVLGLDLVPIA--------PI---RGAVSLEQDITK 93 (832)
Q Consensus 29 KLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p----~~~~ViGVDLsp~~--------~i---~~V~~i~gDIt~ 93 (832)
.|++.....++|.+...+|++|||.|.++.+++..++ ....++.||..... .. +.+.-+..||.+
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeec
Confidence 4788888899999999999999999999999999884 34688999997532 11 246667889998
Q ss_pred hhH
Q 003302 94 PEC 96 (832)
Q Consensus 94 ~~~ 96 (832)
+..
T Consensus 85 l~l 87 (259)
T PF05206_consen 85 LDL 87 (259)
T ss_pred cch
Confidence 753
No 279
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=85.23 E-value=14 Score=38.91 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++..+-. ...++.++++|+++......+...+.. ..+++|+|+++..
T Consensus 9 ~k~vlItG~s-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g~id~li~~Ag 86 (266)
T PRK06171 9 GKIIIVTGGS-SGIGLAIVKELLANGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEIIE-KFGRIDGLVNNAG 86 (266)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHHHH-HcCCCCEEEECCc
Confidence 5678867755 45555554443 346789999887643 223578899999998765554444332 1257799999875
Q ss_pred C
Q 003302 121 P 121 (832)
Q Consensus 121 p 121 (832)
.
T Consensus 87 ~ 87 (266)
T PRK06171 87 I 87 (266)
T ss_pred c
Confidence 3
No 280
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.14 E-value=4 Score=45.63 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=60.3
Q ss_pred CCCCCEEEEEcCCcCHH-HHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCC--Chh-HHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAAPGGW-MQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDIT--KPE-CRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~-sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt--~~~-~~~~l~~~L~~~~~~~ 111 (832)
+++|.+||=|||||=|. +..+++.++ .+.|+.+|+++.. ..-+++.+.-+-. ++. ....+...+.. ..
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~---~~ 242 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGK---KQ 242 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccc---cC
Confidence 46789999999999665 556677776 5799999999742 1123333322111 122 22223333322 23
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcC
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFR 161 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFr 161 (832)
||+++. ++|. ...+..|...|++||++++-.+-
T Consensus 243 ~d~~~d-----CsG~------------~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 243 PDVTFD-----CSGA------------EVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred CCeEEE-----ccCc------------hHHHHHHHHHhccCCEEEEeccC
Confidence 688774 3332 22345678899999997774443
No 281
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.11 E-value=12 Score=39.75 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=67.0
Q ss_pred CCEEEEEcCC-cCHHHHHHHHhCC-CCCEEEEEeCCCC----C----CC-CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAA-PGGWMQVAVQRVP-VGSLVLGLDLVPI----A----PI-RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcG-PGg~sq~La~~~p-~~~~ViGVDLsp~----~----~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++|=.|+| .+|++..++..+. .+..|+.++.+.. . .+ ..+.++++|+++......+...+... .+.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~-~g~ 85 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREH-VDG 85 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHH-cCC
Confidence 5789999996 5788777766543 3567888775531 1 12 24678899999987655554444322 267
Q ss_pred ccEEEeCCCCCCC-----CCc--hhHHhH---HhHH--HHHHHHHHHhhcccCcEEEE
Q 003302 112 FDLVLHDGSPNVG-----GAW--AQEAMS---QNAL--VIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 112 FDlVlsDgapnv~-----g~w--~~D~~~---q~~L--~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+++++...... ... ..+.+. ...+ ....++.+...|+++|.+|.
T Consensus 86 iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~ 143 (256)
T PRK07889 86 LDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVG 143 (256)
T ss_pred CcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEE
Confidence 8999998753311 011 112211 1111 12344556677788898775
No 282
>PRK06940 short chain dehydrogenase; Provisional
Probab=84.73 E-value=9.2 Score=41.06 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=49.6
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
++|=-|+ |+++..++..+..+..|+.++.++-. .. ..+.++++|+++......+...+.. .+.+|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~--~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQT--LGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHh--cCCCCE
Confidence 4554554 68888888877667789999876411 11 2477889999998765555544432 367899
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|+++...
T Consensus 80 li~nAG~ 86 (275)
T PRK06940 80 LVHTAGV 86 (275)
T ss_pred EEECCCc
Confidence 9999753
No 283
>PRK07806 short chain dehydrogenase; Provisional
Probab=84.64 E-value=6.4 Score=40.94 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=60.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC----------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA----------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+||=.|+ +|+++..++..+- .+..|+++..+... . -.++.++++|++++.....+...+.. ..+
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~ 83 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE-EFG 83 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH-hCC
Confidence 567887775 4567766665442 35578887664321 0 12467889999997655444433322 124
Q ss_pred cccEEEeCCCCCCCCCchhHH-hH-HhHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEA-MS-QNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~-~~-q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+|+|+++.+........... +. ...-...+++.+...+..+|.||+
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 679999887432111101110 00 001122344555666666787775
No 284
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.57 E-value=1.9 Score=52.67 Aligned_cols=127 Identities=14% Similarity=0.214 Sum_probs=71.4
Q ss_pred CCCchHHHHHHhcCchhHHHHHHHh---hhhhcCCC-CCCCEEEEEcCCcCHHHHHHHHhC-------CC----CCEEEE
Q 003302 8 HRLDKYYRLAKEHGYRSRASWKLVQ---LDSKFSFL-RSSHAVLDLCAAPGGWMQVAVQRV-------PV----GSLVLG 72 (832)
Q Consensus 8 ~~~D~yy~~Ake~gyrsRaafKLiq---i~~kf~fl-~~g~~VLDLGcGPGg~sq~La~~~-------p~----~~~ViG 72 (832)
...|.||.. .|-..-+.++.++ |..+|... .+.-+|+|+|-|+|.-..++.+.+ +. .-++++
T Consensus 22 ~f~d~y~s~---~~~~~e~~~~f~~~~~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s 98 (662)
T PRK01747 22 QFDDVYFSN---DNGLEETRYVFLGGNGLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFIS 98 (662)
T ss_pred cCCCcccCC---CCHHHHhhhhhhcCCCHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEE
Confidence 455666652 3334444444433 33444322 233689999999999655554333 21 247999
Q ss_pred EeCCCCC---------------------------CCCCc------------eEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 73 LDLVPIA---------------------------PIRGA------------VSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 73 VDLsp~~---------------------------~i~~V------------~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
++..|+. .++++ +.+.+|+.+ .+.... ..||
T Consensus 99 ~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~---------~~~~~~-~~~d 168 (662)
T PRK01747 99 FEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANE---------LLPQLD-ARAD 168 (662)
T ss_pred EECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCceEEEecCCcEEEEEEecCHHH---------HHHhcc-cccc
Confidence 9986642 01232 123345432 122111 4579
Q ss_pred EEEeCC-CCCC-CCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDG-SPNV-GGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDg-apnv-~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.|| +|.. ...|..+ .+....++++|||+|++
T Consensus 169 ~~~lD~FsP~~np~~W~~~----------~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 169 AWFLDGFAPAKNPDMWSPN----------LFNALARLARPGATLAT 204 (662)
T ss_pred EEEeCCCCCccChhhccHH----------HHHHHHHHhCCCCEEEE
Confidence 999998 4432 2346654 34567789999999996
No 285
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.32 E-value=11 Score=39.72 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhCC-CCCEEEEEeCCCC-----CCC--CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRVP-VGSLVLGLDLVPI-----API--RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~p-~~~~ViGVDLsp~-----~~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+.++|=.|++. +|++..++..+- .+..|+.++.+.- ..+ ..+.++++|++++.....+...+.. .++++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~g~i 84 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKE-RVGKI 84 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHH-HhCCC
Confidence 367899899885 677766666552 4668887765421 111 2477899999998765555444432 13678
Q ss_pred cEEEeCCC
Q 003302 113 DLVLHDGS 120 (832)
Q Consensus 113 DlVlsDga 120 (832)
|+++++..
T Consensus 85 D~lv~nAg 92 (252)
T PRK06079 85 DGIVHAIA 92 (252)
T ss_pred CEEEEccc
Confidence 99999874
No 286
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=84.31 E-value=17 Score=37.77 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=48.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCC-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
+.++|=.|++ |+++..++..+ ..+..|++++..+.... .++.++.+|+++......+...+.. ..+.+|+|+++..
T Consensus 8 ~k~vlItGas-~~iG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id~vi~~ag 85 (252)
T PRK08220 8 GKTVWVTGAA-QGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLA-ETGPLDVLVNAAG 85 (252)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHH-HcCCCCEEEECCC
Confidence 4667766665 45555555433 34678999988763222 2477889999998765554443322 1256799999875
Q ss_pred C
Q 003302 121 P 121 (832)
Q Consensus 121 p 121 (832)
.
T Consensus 86 ~ 86 (252)
T PRK08220 86 I 86 (252)
T ss_pred c
Confidence 3
No 287
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.24 E-value=4.7 Score=45.62 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.++.+||.+|||+ |.++..+++.++. ..|++++.++-. ...++.++...-.+ .....+.....+ ..+|
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~-~~~~~l~~~~~~---~~~D 256 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLGAETINFEEVD-DVVEALRELTGG---RGPD 256 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCcEEEcCCcch-HHHHHHHHHcCC---CCCC
Confidence 46788999999887 7777778888753 369999887621 12133333221111 122333333222 3579
Q ss_pred EEEeCCCCCC-CCCchhH--Hh-HHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 114 LVLHDGSPNV-GGAWAQE--AM-SQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 114 lVlsDgapnv-~g~w~~D--~~-~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+|+....... ...|..- +. ....-...++..+.++|++||+|++-
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 9987421110 0001000 00 00000123556778899999999873
No 288
>PRK08177 short chain dehydrogenase; Provisional
Probab=84.22 E-value=13 Score=38.20 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=47.7
Q ss_pred EEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
+||=.|| +|+++..++..+. .+..|++++.++.. .+.++.++.+|+++......+...+.. +.+|+|+++
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~---~~id~vi~~ 78 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQG---QRFDLLFVN 78 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhc---CCCCEEEEc
Confidence 4665665 4666665554442 35689999987632 234678889999997665555555543 457999998
Q ss_pred CC
Q 003302 119 GS 120 (832)
Q Consensus 119 ga 120 (832)
..
T Consensus 79 ag 80 (225)
T PRK08177 79 AG 80 (225)
T ss_pred Cc
Confidence 64
No 289
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.56 E-value=14 Score=40.06 Aligned_cols=113 Identities=9% Similarity=0.036 Sum_probs=61.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCC-----------CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAP-----------IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~-----------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++...... -.++.++.+|+++......+...+... .+
T Consensus 46 ~k~iLItGas-ggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~-~~ 123 (290)
T PRK06701 46 GKVALITGGD-SGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE-LG 123 (290)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH-cC
Confidence 5678888864 45555554443 2356788887664210 124678899999977655444333221 25
Q ss_pred cccEEEeCCCCCC--CCCc--hhHHhH---Hh--HHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNV--GGAW--AQEAMS---QN--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv--~g~w--~~D~~~---q~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+|+|++++.... .... ..+.+. +. .-...++..+...++++|.||+
T Consensus 124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~ 179 (290)
T PRK06701 124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIIN 179 (290)
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEE
Confidence 6799999864211 1111 111111 01 1123344455566677888876
No 290
>PRK06523 short chain dehydrogenase; Provisional
Probab=83.51 E-value=16 Score=38.40 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCC-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
.+.+||-.||+ |+++..++..+ ..+..|++++.++-... .++.++++|+++......+...+... .+.+|+|+++.
T Consensus 8 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~vi~~a 85 (260)
T PRK06523 8 AGKRALVTGGT-KGIGAATVARLLEAGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLER-LGGVDILVHVL 85 (260)
T ss_pred CCCEEEEECCC-CchhHHHHHHHHHCCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHHHHHHHH-cCCCCEEEECC
Confidence 46789988865 44555554433 23568999987653333 24778999999987655444433221 25679999987
Q ss_pred C
Q 003302 120 S 120 (832)
Q Consensus 120 a 120 (832)
.
T Consensus 86 g 86 (260)
T PRK06523 86 G 86 (260)
T ss_pred c
Confidence 5
No 291
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=83.34 E-value=8.6 Score=42.51 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCC---CCEEEEEeCCCCC--------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPV---GSLVLGLDLVPIA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~---~~~ViGVDLsp~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+++||=.|+ +|+++.+++..+-. ...|++++..+.. ..+++.++.+|+++.... ...+ ..
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l---~~~~-----~~ 74 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERL---TRAL-----RG 74 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHH---HHHH-----hc
Confidence 677887776 57888777765422 2478888765421 113588899999997543 2333 23
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+|.++.
T Consensus 75 iD~Vih~Ag~ 84 (324)
T TIGR03589 75 VDYVVHAAAL 84 (324)
T ss_pred CCEEEECccc
Confidence 5999998764
No 292
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.32 E-value=18 Score=38.47 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhCC-CCCEEEEEeCCC-----CC----CC--CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRVP-VGSLVLGLDLVP-----IA----PI--RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~p-~~~~ViGVDLsp-----~~----~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.++|=.|+++ +|++..++..+- .+..|+.++.+. +. .+ .++.++++|+++......+...+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~- 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE- 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh-
Confidence 467899999984 777777666543 456787775432 10 11 24778899999987666555554432
Q ss_pred CCcccEEEeCCC
Q 003302 109 VRAFDLVLHDGS 120 (832)
Q Consensus 109 ~~~FDlVlsDga 120 (832)
++.+|+++++..
T Consensus 85 ~g~ld~lv~nag 96 (257)
T PRK08594 85 VGVIHGVAHCIA 96 (257)
T ss_pred CCCccEEEECcc
Confidence 367899999864
No 293
>PRK06128 oxidoreductase; Provisional
Probab=82.36 E-value=23 Score=38.51 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=61.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------C-CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------P-IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+||=.|+ +|+++..++..+ ..+..|+.+.+.... . -..+.++.+|+++......+...+.. ..
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~ 132 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK-EL 132 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH-Hh
Confidence 567887885 555666555544 235567766554210 0 12467889999997654444333222 12
Q ss_pred CcccEEEeCCCCCCC-C-Cc--hhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVG-G-AW--AQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~-g-~w--~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++...... . .+ ..+.+.. . .-....++.+...|++||.||+
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~ 189 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEE
Confidence 567999999864321 1 11 1111111 1 1112345556667788888876
No 294
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.25 E-value=0.61 Score=46.81 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=32.0
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.++|+|++. +..+|+.-.+. ..++++++++|+|||++-|.|...
T Consensus 46 ns~d~iyae--------HvlEHlt~~Eg-~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 46 NSVDAIYAE--------HVLEHLTYDEG-TSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cchHHHHHH--------HHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEEcCCc
Confidence 455887763 45666654333 578999999999999999977444
No 295
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=81.96 E-value=1.2 Score=48.27 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=55.8
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
+||||+||-||++.-+.... --.|.++|+++.. ..+ ....+||+..... .++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~-----~l~~----~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--EVICGDITEIDPS-----DLPK----DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH-----HHHH----T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--ccccccccccccc-----cccc----cceEEEec
Confidence 69999999999998877652 2378999999742 234 7789999987543 2332 24999887
Q ss_pred CCCCCCC-Cc----hhHHhHHhHHHHHHHHHHHhhcccCcEEE
Q 003302 119 GSPNVGG-AW----AQEAMSQNALVIDSVKLATQFLAPKGTFV 156 (832)
Q Consensus 119 gapnv~g-~w----~~D~~~q~~L~~~aLk~A~~~LkpGG~fV 156 (832)
+++...+ .. ..|. ...|....++. ...++|--.|+
T Consensus 69 pPCQ~fS~ag~~~~~~d~--r~~L~~~~~~~-v~~~~Pk~~~~ 108 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDP--RNSLFFEFLRI-VKELKPKYFLL 108 (335)
T ss_dssp ---TTTSTTSTHHCCCCH--TTSHHHHHHHH-HHHHS-SEEEE
T ss_pred cCCceEeccccccccccc--cchhhHHHHHH-HhhccceEEEe
Confidence 6543211 11 1121 12455555554 45678855443
No 296
>PRK08265 short chain dehydrogenase; Provisional
Probab=81.83 E-value=19 Score=38.03 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=48.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.++|=.|++ |+++..++..+ ..+..|+.++.++-. .+ ..+.++++|+++......+...+... .+.+|+
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~g~id~ 83 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVAR-FGRVDI 83 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHH-hCCCCE
Confidence 5678877754 55665555443 235688888877521 11 24788999999976554444333221 256799
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|++++..
T Consensus 84 lv~~ag~ 90 (261)
T PRK08265 84 LVNLACT 90 (261)
T ss_pred EEECCCC
Confidence 9998753
No 297
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.61 E-value=19 Score=38.76 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=66.0
Q ss_pred CCCEEEEEcCC-cCHHHHHHHHhC-CCCCEEEEEeCCCC---------CCCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAA-PGGWMQVAVQRV-PVGSLVLGLDLVPI---------APIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcG-PGg~sq~La~~~-p~~~~ViGVDLsp~---------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++ .+|++..++..+ ..++.|+.+..+.. ..+..+.++++|++++.....+...+... ++
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~g 87 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK-WG 87 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh-cC
Confidence 35688888987 477887776655 24567776643310 11233567899999987666665554332 36
Q ss_pred cccEEEeCCCCCC-----CCCc--hhHHhHH---hHH--HHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNV-----GGAW--AQEAMSQ---NAL--VIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv-----~g~w--~~D~~~q---~~L--~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+|+++++..... +..+ ..+.+.. ..+ ....++.+...|+.+|.+|+
T Consensus 88 ~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~ 146 (272)
T PRK08159 88 KLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILT 146 (272)
T ss_pred CCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 7899999975321 1111 1112211 111 12334455667777888775
No 298
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.42 E-value=2.8 Score=47.21 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=23.5
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
+++||+|+|||.-..++...+|.--.++-++.+|
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp 148 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASP 148 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCH
Confidence 5699999999987666666666433455555655
No 299
>PRK05993 short chain dehydrogenase; Provisional
Probab=81.40 E-value=13 Score=39.87 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=49.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--C--CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--P--IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
+.+||=.|| +|+++..++..+ ..+..|++++.++-. . ..++.++.+|+++......+...+.....+.+|+|++
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~ 82 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFN 82 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEE
Confidence 457887776 577777766554 345689998876521 1 1357889999999765544443332211246799999
Q ss_pred CCCC
Q 003302 118 DGSP 121 (832)
Q Consensus 118 Dgap 121 (832)
++..
T Consensus 83 ~Ag~ 86 (277)
T PRK05993 83 NGAY 86 (277)
T ss_pred CCCc
Confidence 8753
No 300
>PRK05717 oxidoreductase; Validated
Probab=81.02 E-value=22 Score=37.26 Aligned_cols=78 Identities=15% Similarity=0.030 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.|.+||=.|++ |+++..++..+ ..+..|+.++.++-. .+ ..+.++.+|+++......+...+.. ..+.+|
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~g~id 86 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLG-QFGRLD 86 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH-HhCCCC
Confidence 46788877775 56666555554 345689998876421 12 2477899999997644333222221 125679
Q ss_pred EEEeCCCC
Q 003302 114 LVLHDGSP 121 (832)
Q Consensus 114 lVlsDgap 121 (832)
+|+++...
T Consensus 87 ~li~~ag~ 94 (255)
T PRK05717 87 ALVCNAAI 94 (255)
T ss_pred EEEECCCc
Confidence 99999753
No 301
>PRK06182 short chain dehydrogenase; Validated
Probab=80.90 E-value=17 Score=38.65 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=50.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC--CC--CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI--AP--IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~--~~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
+.+||=.|| +|+++..++..+ ..+..|++++.++- .. -.++.++.+|+++......+...+... .+.+|+|++
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~-~~~id~li~ 80 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAE-EGRIDVLVN 80 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHh-cCCCCEEEE
Confidence 457776674 566777776654 34568998877642 11 135888999999987655444433221 256799999
Q ss_pred CCCCC
Q 003302 118 DGSPN 122 (832)
Q Consensus 118 Dgapn 122 (832)
+..+.
T Consensus 81 ~ag~~ 85 (273)
T PRK06182 81 NAGYG 85 (273)
T ss_pred CCCcC
Confidence 97543
No 302
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=80.71 E-value=2.2 Score=43.54 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=30.2
Q ss_pred ccEEEeCCCCCCCCC------c--hhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 112 FDLVLHDGSPNVGGA------W--AQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 112 FDlVlsDgapnv~g~------w--~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
+|+|+.|++.+++.. + ......-...+...+..+.++|+|||.+++-+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFI 56 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEe
Confidence 499999998765543 0 01111123446778899999999999998754
No 303
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=80.29 E-value=0.94 Score=47.40 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=28.4
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCC
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLV 76 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLs 76 (832)
--+.|+|||-||++..|+...| ...|+|++|.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR 93 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIR 93 (249)
T ss_pred ceEEeeccCccchhhhccccCc-cceeeeehhh
Confidence 4599999999999999999988 5699999886
No 304
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.26 E-value=19 Score=38.27 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCcC-HHHHHHHHhCC-CCCEEEEEeCCCC-----C----CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPG-GWMQVAVQRVP-VGSLVLGLDLVPI-----A----PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPG-g~sq~La~~~p-~~~~ViGVDLsp~-----~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++.| |++..++..+. .++.|+.++.+.. . .+....++++|++++.....+...+.. .++
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~-~~g 85 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKE-KWG 85 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHH-HcC
Confidence 3567888888774 55555544332 3567877765421 0 112234568999998766555554433 236
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.+|+++++..
T Consensus 86 ~iDilVnnag 95 (260)
T PRK06603 86 SFDFLLHGMA 95 (260)
T ss_pred CccEEEEccc
Confidence 7899999864
No 305
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.07 E-value=8.6 Score=43.44 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=53.0
Q ss_pred CCCCCEEEEEcCCcCH--HHHHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAPGG--WMQVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg--~sq~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.||.+|+=.|+| |. .+.-+++.++ +.|+++|.++-. .+-.-.++.+. +......+. +.|
T Consensus 164 ~~pG~~V~I~G~G-GlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~--------~~~ 230 (339)
T COG1064 164 VKPGKWVAVVGAG-GLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVK--------EIA 230 (339)
T ss_pred CCCCCEEEEECCc-HHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHhH--------hhC
Confidence 4689999999998 32 3444455553 799999999742 22122233322 322222222 226
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|+|+.-.. . ..+..++.+|++||++|+-
T Consensus 231 d~ii~tv~-~-----------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 231 DAIIDTVG-P-----------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred cEEEECCC-h-----------------hhHHHHHHHHhcCCEEEEE
Confidence 99997532 1 1234578999999999983
No 306
>PRK08324 short chain dehydrogenase; Validated
Probab=80.07 E-value=18 Score=44.58 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC---CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI---RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i---~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.|.+||=.|++ |+++..++..+ ..+..|++++.++-. .+ .++.++.+|+++......+...+.. ..+.
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~-~~g~ 498 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAAL-AFGG 498 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHH-HcCC
Confidence 35788877764 55555554433 235689999987521 11 2678899999997655444333221 1256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 499 iDvvI~~AG~ 508 (681)
T PRK08324 499 VDIVVSNAGI 508 (681)
T ss_pred CCEEEECCCC
Confidence 7999998753
No 307
>PRK05693 short chain dehydrogenase; Provisional
Probab=80.05 E-value=14 Score=39.26 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=47.7
Q ss_pred EEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
+||=.|| +|+++..++..+ ..+..|++++.++-. ...++.++.+|+++......+...+.. ..+.+|+|+++.
T Consensus 3 ~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~~id~vi~~a 80 (274)
T PRK05693 3 VVLITGC-SSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEA-EHGGLDVLINNA 80 (274)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHH-hcCCCCEEEECC
Confidence 4665665 566666665544 335689998876421 113577889999997655544443322 125679999998
Q ss_pred CCC
Q 003302 120 SPN 122 (832)
Q Consensus 120 apn 122 (832)
...
T Consensus 81 g~~ 83 (274)
T PRK05693 81 GYG 83 (274)
T ss_pred CCC
Confidence 643
No 308
>PRK07576 short chain dehydrogenase; Provisional
Probab=79.96 E-value=19 Score=38.20 Aligned_cols=77 Identities=9% Similarity=0.054 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
++.+||=.|+ .|+++..++..+ ..+..|++++.++-. . ..++.++.+|+++......+...+.. ..+
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~-~~~ 85 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIAD-EFG 85 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH-HcC
Confidence 4567887875 556665554433 235689999876411 1 13467789999987644443333221 125
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.+|+|+++..
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 6799999864
No 309
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.84 E-value=9.6 Score=42.92 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 42 SSHAVLDLCAAPGGWM-QVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~s-q~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
++.+|+=+||||=|++ ..+++..+ .+.|+.+|+++.. ..-+...+...-.+ .....+.....+ ..||+|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t~g---~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILELTGG---RGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHHHhCC---CCCCEE
Confidence 4458999999997776 45555554 5799999998732 11233322222221 122222222221 256999
Q ss_pred EeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 116 LHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 116 lsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+=- .|. ..++..|..+++|||++++--+
T Consensus 243 ie~-----~G~------------~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 243 IEA-----VGS------------PPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred EEC-----CCC------------HHHHHHHHHHhcCCCEEEEEec
Confidence 853 231 1256678999999999997433
No 310
>PRK07326 short chain dehydrogenase; Provisional
Probab=79.63 E-value=17 Score=37.44 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=49.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC---CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI---RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i---~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+..||=+|+ +|+++..++..+ ..+..|++++.++-. .+ .++.++++|+++......+...+... .+.+
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~ 83 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAA-FGGL 83 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHH-cCCC
Confidence 567887885 677777666544 235689999876521 11 45788999999876544333333221 2467
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|+|++.+.+
T Consensus 84 d~vi~~ag~ 92 (237)
T PRK07326 84 DVLIANAGV 92 (237)
T ss_pred CEEEECCCC
Confidence 999998754
No 311
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=79.62 E-value=17 Score=38.26 Aligned_cols=78 Identities=10% Similarity=0.145 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+.++|=.||+ ||++..++..+ ..+..|+.++..... .. .++.++++|+++......+...+... .+++
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~g~i 84 (251)
T PRK12481 7 NGKVAIITGCN-TGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV-MGHI 84 (251)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH-cCCC
Confidence 46789988875 45666555443 346688888765321 11 24778899999987655554443221 2668
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|++++++..
T Consensus 85 D~lv~~ag~ 93 (251)
T PRK12481 85 DILINNAGI 93 (251)
T ss_pred CEEEECCCc
Confidence 999998753
No 312
>PRK08267 short chain dehydrogenase; Provisional
Probab=79.58 E-value=21 Score=37.54 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=47.1
Q ss_pred EEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC------CC--CCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 45 AVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA------PI--RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~------~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
+||=.|++ |+++..++..+. .+..|++++.++-. .+ .++.++++|+++......+...+.....+.+|+|
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v 81 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL 81 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence 46666655 566666655432 35688888866421 12 2578899999997655444333322112567999
Q ss_pred EeCCCCC
Q 003302 116 LHDGSPN 122 (832)
Q Consensus 116 lsDgapn 122 (832)
++++...
T Consensus 82 i~~ag~~ 88 (260)
T PRK08267 82 FNNAGIL 88 (260)
T ss_pred EECCCCC
Confidence 9987543
No 313
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=79.51 E-value=26 Score=37.17 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=51.1
Q ss_pred CCCEEEEEcCC-cCHHHHHHHHhCC-CCCEEEEEeCCCC--------C----CCCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 42 SSHAVLDLCAA-PGGWMQVAVQRVP-VGSLVLGLDLVPI--------A----PIRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 42 ~g~~VLDLGcG-PGg~sq~La~~~p-~~~~ViGVDLsp~--------~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
.+.+||=.|++ ++|++..++..+- .+..|+.+....- . ....+.+++.|+++......+...+..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~- 83 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ- 83 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH-
Confidence 46788999995 6888887776653 3556766543221 0 112366789999998766555544433
Q ss_pred cCCcccEEEeCCCC
Q 003302 108 GVRAFDLVLHDGSP 121 (832)
Q Consensus 108 ~~~~FDlVlsDgap 121 (832)
..+.+|+++++...
T Consensus 84 ~~g~iD~lv~nag~ 97 (258)
T PRK07370 84 KWGKLDILVHCLAF 97 (258)
T ss_pred HcCCCCEEEEcccc
Confidence 23678999999753
No 314
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.31 E-value=15 Score=39.02 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=59.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeC--CCCCCC---CCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDL--VPIAPI---RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDL--sp~~~i---~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
...||=.||..||++-.|+.... .++.|++.-. .+|..+ .++.....|++++.....+...+...+.|..|+.+
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L~ 86 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLLY 86 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEEE
Confidence 46799999999999988876554 3567888743 456543 46778889999988766666666555668889999
Q ss_pred eCCCCCC
Q 003302 117 HDGSPNV 123 (832)
Q Consensus 117 sDgapnv 123 (832)
.|+...|
T Consensus 87 NNAG~~C 93 (289)
T KOG1209|consen 87 NNAGQSC 93 (289)
T ss_pred cCCCCCc
Confidence 9975443
No 315
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=79.28 E-value=27 Score=36.70 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+..+|=.||+ |+++..++..+ ..+..|++++..... .. ..+.++++|+++......+...+... .+.+
T Consensus 9 ~~k~~lItG~~-~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~~ 86 (253)
T PRK08993 9 EGKVAVVTGCD-TGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAE-FGHI 86 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-hCCC
Confidence 35678877764 56666665544 236789998876421 11 24678899999876554444333221 2567
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|+|+++...
T Consensus 87 D~li~~Ag~ 95 (253)
T PRK08993 87 DILVNNAGL 95 (253)
T ss_pred CEEEECCCC
Confidence 999998753
No 316
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=79.11 E-value=2.3 Score=40.26 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
.+-...+|||||.|-..-.|... +..-+|+|+..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 34567999999999887766654 45678898865
No 317
>PRK12744 short chain dehydrogenase; Provisional
Probab=78.83 E-value=31 Score=36.20 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=61.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-------------C-CCCceEEEccCCChhHHHHHHHHHhhc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-------------P-IRGAVSLEQDITKPECRARVKKVMEEH 107 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-------------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~ 107 (832)
+.+||=.|| +|+++..++..+- .+..|+.+...+.. . -.++.++++|++++.....+...+...
T Consensus 8 ~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 86 (257)
T PRK12744 8 GKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA 86 (257)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence 567887785 5556666665543 34566666543211 0 125778899999986655444433221
Q ss_pred cCCcccEEEeCCCCCC-CCCc--hhHHhHH---h--HHHHHHHHHHHhhcccCcEEEE
Q 003302 108 GVRAFDLVLHDGSPNV-GGAW--AQEAMSQ---N--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 108 ~~~~FDlVlsDgapnv-~g~w--~~D~~~q---~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+.+|+|+++..... ...+ ..+.+.. . .-....++.+...++++|.+++
T Consensus 87 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 87 -FGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred -hCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 256799999975421 1112 1222211 0 1112345556667777887764
No 318
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=78.58 E-value=2.1 Score=45.89 Aligned_cols=70 Identities=27% Similarity=0.336 Sum_probs=40.4
Q ss_pred CCCC--CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC--------------C-C-----CCceEEEccCCChhHH
Q 003302 40 LRSS--HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA--------------P-I-----RGAVSLEQDITKPECR 97 (832)
Q Consensus 40 l~~g--~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~--------------~-i-----~~V~~i~gDIt~~~~~ 97 (832)
+++| .+|||.-||-|.=+.+++.. ++.|+|++-+|+. + . .+++.+++|..+.
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~--- 144 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY--- 144 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH---
T ss_pred CCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH---
Confidence 3454 38999999999999999865 5699999999842 1 1 2577888888773
Q ss_pred HHHHHHHhhccCCcccEEEeCCCCC
Q 003302 98 ARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 98 ~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
|. ....+||+|..||.+.
T Consensus 145 ------L~-~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 145 ------LR-QPDNSFDVVYFDPMFP 162 (234)
T ss_dssp ------CC-CHSS--SEEEE--S--
T ss_pred ------Hh-hcCCCCCEEEECCCCC
Confidence 11 1226789999998643
No 319
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.28 E-value=22 Score=37.78 Aligned_cols=77 Identities=9% Similarity=-0.006 Sum_probs=49.5
Q ss_pred CCEEEEEcC-CcCHHHHHHHHhCC-CCCEEEEEeCCC-----CC----CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCA-APGGWMQVAVQRVP-VGSLVLGLDLVP-----IA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGc-GPGg~sq~La~~~p-~~~~ViGVDLsp-----~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|+ |++|++..++..+. .+..|+.++... +. .+..+.++++|++++.....+...+.. .++.
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~-~~g~ 84 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQ-HWDG 84 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHH-HhCC
Confidence 578888898 57788777766553 356777665321 10 123345688999998766555554433 2367
Q ss_pred ccEEEeCCC
Q 003302 112 FDLVLHDGS 120 (832)
Q Consensus 112 FDlVlsDga 120 (832)
+|++++++.
T Consensus 85 iD~lvnnAG 93 (260)
T PRK06997 85 LDGLVHSIG 93 (260)
T ss_pred CcEEEEccc
Confidence 899999974
No 320
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.82 E-value=31 Score=35.45 Aligned_cols=114 Identities=13% Similarity=0.036 Sum_probs=64.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.+||=.|++ |++++.+++.+ ..+..|++++.++-. ...++.++.+|+++......+...... ..+.+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~~i 82 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAK-VLNAI 82 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHH-HhCCC
Confidence 5688888885 66777776654 246689999876521 112578889999987654443333221 12456
Q ss_pred cEEEeCCCCCCC-CCchhHHhH---Hh--HHHHHHHHHHHhhcccCcEEEEE
Q 003302 113 DLVLHDGSPNVG-GAWAQEAMS---QN--ALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 113 DlVlsDgapnv~-g~w~~D~~~---q~--~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
|.|++..+.... ..+..+.+. +. .-...++..+...+++||.||+.
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 988887642211 111111111 00 11123345556677788988863
No 321
>PRK06196 oxidoreductase; Provisional
Probab=77.81 E-value=21 Score=39.06 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.+.+||=.||+ |+++..++..+- .+..|++++.++-. .+.++.++.+|+++......+...+... .+.+|+
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~-~~~iD~ 102 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDS-GRRIDI 102 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhc-CCCCCE
Confidence 45788878854 677776665442 35688888876421 2345888999999987555444443321 256799
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|++++..
T Consensus 103 li~nAg~ 109 (315)
T PRK06196 103 LINNAGV 109 (315)
T ss_pred EEECCCC
Confidence 9999753
No 322
>PRK07578 short chain dehydrogenase; Provisional
Probab=77.25 E-value=32 Score=34.63 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=56.3
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVG 124 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~ 124 (832)
++|=.|+ .|+++..++..+.....|++++.++- ++.+|+++......+...+ +.+|+|+++......
T Consensus 2 ~vlItGa-s~giG~~la~~l~~~~~vi~~~r~~~-------~~~~D~~~~~~~~~~~~~~-----~~id~lv~~ag~~~~ 68 (199)
T PRK07578 2 KILVIGA-SGTIGRAVVAELSKRHEVITAGRSSG-------DVQVDITDPASIRALFEKV-----GKVDAVVSAAGKVHF 68 (199)
T ss_pred eEEEEcC-CcHHHHHHHHHHHhcCcEEEEecCCC-------ceEecCCChHHHHHHHHhc-----CCCCEEEECCCCCCC
Confidence 4676775 46666666665532257888876532 4678999876554443322 467999998753221
Q ss_pred CC---chhHHhHH-----hHHHHHHHHHHHhhcccCcEEEE
Q 003302 125 GA---WAQEAMSQ-----NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 125 g~---w~~D~~~q-----~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+. ...+.+.. ..-....++.+...++++|.|++
T Consensus 69 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~ 109 (199)
T PRK07578 69 APLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTL 109 (199)
T ss_pred CchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 11 11111111 01112345566667778898876
No 323
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=77.09 E-value=16 Score=39.56 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=52.3
Q ss_pred CCCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 39 FLRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 39 fl~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.++.+||-+|||+ |..+..++...+ ..|++++.++-. ...++..+..+.. ......+ ..... ..+|
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~-~~~~~---~~~D 234 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKK-AAGLG---GGFD 234 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHH-HHhcC---CCce
Confidence 357788888877653 455555666654 568888776521 1112322222211 1111222 22222 4579
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+|+.... + ...+..+.++|++||+|++.
T Consensus 235 ~vid~~g----~-------------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 235 VIFDFVG----T-------------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEEECCC----C-------------HHHHHHHHHHhhcCCEEEEE
Confidence 9986421 1 12345678999999999974
No 324
>PRK09072 short chain dehydrogenase; Provisional
Probab=76.94 E-value=31 Score=36.35 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHh-CCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQR-VPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~-~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
++.+||=.||+. +++..++.. ...+..|++++.++-. .-.++.++.+|+++......+...+.. .+.
T Consensus 4 ~~~~vlItG~s~-~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASG-GIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARARE--MGG 80 (263)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHh--cCC
Confidence 356778777764 455444433 2346689999876411 112578889999997655444444432 256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++.+.
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7999998754
No 325
>PRK09186 flagellin modification protein A; Provisional
Probab=76.57 E-value=38 Score=35.27 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.+||=.|++ |+++..++..+ ..+..|++++.++-. ....+.++++|++++.....+...+...
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~- 80 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK- 80 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH-
Confidence 35678877764 56666665554 235688888766421 1123566799999977654444433221
Q ss_pred CCcccEEEeCCC
Q 003302 109 VRAFDLVLHDGS 120 (832)
Q Consensus 109 ~~~FDlVlsDga 120 (832)
.+.+|+|+++..
T Consensus 81 ~~~id~vi~~A~ 92 (256)
T PRK09186 81 YGKIDGAVNCAY 92 (256)
T ss_pred cCCccEEEECCc
Confidence 256799999874
No 326
>PRK05872 short chain dehydrogenase; Provisional
Probab=76.24 E-value=34 Score=37.10 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC---CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI---RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i---~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+.+||=.|++. |++..++..+ ..+..|+.++.++-. .+ ..+.++.+|+++......+...+... .+.
T Consensus 8 ~gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVER-FGG 85 (296)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHH-cCC
Confidence 467888777654 5555555443 235688888776411 11 23556679999977655444433221 256
Q ss_pred ccEEEeCCCCC
Q 003302 112 FDLVLHDGSPN 122 (832)
Q Consensus 112 FDlVlsDgapn 122 (832)
+|+|+++....
T Consensus 86 id~vI~nAG~~ 96 (296)
T PRK05872 86 IDVVVANAGIA 96 (296)
T ss_pred CCEEEECCCcC
Confidence 79999997643
No 327
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=76.07 E-value=13 Score=37.97 Aligned_cols=112 Identities=12% Similarity=0.075 Sum_probs=60.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
|.++|=+|.. =-|..++|=..+ .+.|+-|+-+++.-.... +..+.+....+.... .. ...++||++.|-.+..
T Consensus 2 ~~~g~V~GS~-~PwvEv~aL~~G-A~~iltveyn~L~i~~~~---~dr~ssi~p~df~~~-~~-~y~~~fD~~as~~siE 74 (177)
T PF03269_consen 2 GKSGLVVGSM-QPWVEVMALQHG-AAKILTVEYNKLEIQEEF---RDRLSSILPVDFAKN-WQ-KYAGSFDFAASFSSIE 74 (177)
T ss_pred CceEEEEecC-CchhhHHHHHcC-CceEEEEeecccccCccc---ccccccccHHHHHHH-HH-Hhhccchhhheechhc
Confidence 4566667776 347777776655 568999998874311111 111111111111111 11 1237789998877654
Q ss_pred CCCC-chhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 123 VGGA-WAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 123 v~g~-w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
..|. ..-|+.....- +.++..+..+|+|||.|++.|.-+
T Consensus 75 h~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 75 HFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred cccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecC
Confidence 3332 22232222211 356677889999999999876444
No 328
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.97 E-value=35 Score=35.86 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=48.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++.++-. .-.++.++++|+++......+...+.. .+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~ 84 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE-AF 84 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH-Hh
Confidence 5688888876 55555554433 345689888876421 112477889999997654444333322 12
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
+.+|+|+++...
T Consensus 85 g~id~li~~ag~ 96 (260)
T PRK07063 85 GPLDVLVNNAGI 96 (260)
T ss_pred CCCcEEEECCCc
Confidence 678999998753
No 329
>PRK12937 short chain dehydrogenase; Provisional
Probab=75.79 E-value=49 Score=34.11 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCC----------CC-CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPI----------AP-IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~----------~~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
++.+||=.||+ |+++..++..+- .+..|+.+..... .. -.++.++.+|+++......+...+... .
T Consensus 4 ~~~~vlItG~~-~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~ 81 (245)
T PRK12937 4 SNKVAIVTGAS-RGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA-F 81 (245)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-c
Confidence 35677778875 666666665442 3456666543221 01 134788899999976554443333221 2
Q ss_pred CcccEEEeCCCCCCCC-Cch--hHHhH---Hh--HHHHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNVGG-AWA--QEAMS---QN--ALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g-~w~--~D~~~---q~--~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+|+++......+ .+. .+.+. +. .-....+..+...++++|.||+
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~ 137 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIIN 137 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEE
Confidence 5679999987532211 111 11111 00 1112334555666778888876
No 330
>PRK08643 acetoin reductase; Validated
Probab=75.66 E-value=52 Score=34.37 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=47.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++|=.|+ +|+++..++..+ ..+..|++++.++-. . -.++.++++|++++.....+...+... .+.
T Consensus 2 ~k~~lItGa-s~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~ 79 (256)
T PRK08643 2 SKVALVTGA-GQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDT-FGD 79 (256)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-cCC
Confidence 346675664 455665555443 235689988876421 1 135678899999987655544444321 256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 80 id~vi~~ag~ 89 (256)
T PRK08643 80 LNVVVNNAGV 89 (256)
T ss_pred CCEEEECCCC
Confidence 7999998753
No 331
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.46 E-value=36 Score=35.27 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=60.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+||=.|+ +|+.+..++..+. .+..|+.+...... .. ..+.++.+|+++......+...+... .+
T Consensus 6 ~~~vlitGa-sg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~ 83 (252)
T PRK06077 6 DKVVVVTGS-GRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDR-YG 83 (252)
T ss_pred CcEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHH-cC
Confidence 467887775 5666666655443 34566554332110 11 23567889999977554444333221 25
Q ss_pred cccEEEeCCCCCCC-CCchh--HHhH---H--hHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVG-GAWAQ--EAMS---Q--NALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~-g~w~~--D~~~---q--~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.+|+|+++.+.... ..+.. +.+. + ..-...++..+...|+++|.||+
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~ 138 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVN 138 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEE
Confidence 67999999854221 11211 1110 1 11123445566667778888886
No 332
>PRK07985 oxidoreductase; Provisional
Probab=75.43 E-value=37 Score=36.86 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=60.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------C-CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------P-IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++..... . -..+.++.+|+++......+...+.. .+
T Consensus 49 ~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~ 126 (294)
T PRK07985 49 DRKALVTGGD-SGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK-AL 126 (294)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH-Hh
Confidence 4688988865 55555555443 235678777654211 0 12467889999997655444433322 23
Q ss_pred CcccEEEeCCCCCC--CCCc--hhHHhH---HhHH--HHHHHHHHHhhcccCcEEEE
Q 003302 110 RAFDLVLHDGSPNV--GGAW--AQEAMS---QNAL--VIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv--~g~w--~~D~~~---q~~L--~~~aLk~A~~~LkpGG~fV~ 157 (832)
+.+|+++++..... ...+ ..+.+. +..+ ...+++.+...|+.+|.+|+
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~ 183 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIIT 183 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEE
Confidence 66799999864321 1111 111111 1111 12344455566677888776
No 333
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=75.33 E-value=10 Score=37.98 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=52.7
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
.-||+||-|.|----+|...+| +..|+.+|-.--. ..+.-.+++|||... ... ...++ ...-++.+|-
T Consensus 30 G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~t--l~~-~~~~g----~~a~laHaD~ 101 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHPSSTPPEEDLILGDIRET--LPA-LARFG----AGAALAHADI 101 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GGG---GGGEEES-HHHH--HHH-HHHH-----S-EEEEEE--
T ss_pred CceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCCCCCCchHheeeccHHHH--hHH-HHhcC----CceEEEEeec
Confidence 4699999999999999999998 6799999986422 123345789998652 222 11222 2336666664
Q ss_pred CCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 120 SPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 120 apnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
. ++....|.... .-+--++..+|.|||.+|.
T Consensus 102 G---~g~~~~d~a~a----~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 102 G---TGDKEKDDATA----AWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp -----S-HHHHHHHH----HHHHHHHGGGEEEEEEEEE
T ss_pred C---CCCcchhHHHH----HhhhHHHHHHhcCCcEEEe
Confidence 2 23333333321 1122356789999999986
No 334
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=74.94 E-value=16 Score=38.27 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=61.0
Q ss_pred EEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC--CC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 46 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP--IA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 46 VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp--~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
|.|+||-=|..+.+|.+... ..+|+++|+++ +. . ...+.+..+|-... +... ..+|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~---------l~~~--e~~d 68 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV---------LKPG--EDVD 68 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-----------GG--G---
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc---------cCCC--CCCC
Confidence 68999999999999998754 55899999996 21 1 23478888886542 1111 1247
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHH-HHHHHcccc
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVL-YCLKQLFEK 178 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll-~~L~~~F~~ 178 (832)
+|+.-|. || .|+...|......+...-.||+.- ......|. |+...-|.-
T Consensus 69 ~ivIAGM---GG----------~lI~~ILe~~~~~~~~~~~lILqP--~~~~~~LR~~L~~~gf~I 119 (205)
T PF04816_consen 69 TIVIAGM---GG----------ELIIEILEAGPEKLSSAKRLILQP--NTHAYELRRWLYENGFEI 119 (205)
T ss_dssp EEEEEEE----H----------HHHHHHHHHTGGGGTT--EEEEEE--SS-HHHHHHHHHHTTEEE
T ss_pred EEEEecC---CH----------HHHHHHHHhhHHHhccCCeEEEeC--CCChHHHHHHHHHCCCEE
Confidence 8777652 43 244556666667777767787632 23344554 444444543
No 335
>PRK07454 short chain dehydrogenase; Provisional
Probab=74.88 E-value=29 Score=35.90 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
...++|=.|+ +|+++..++..+. .+..|++++.++-. . -.++.++.+|++++.....+...+... .+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~ 82 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ-FG 82 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH-cC
Confidence 3467888885 6777777766553 35689999876421 1 135778999999976554443333221 25
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.+|+|++++.
T Consensus 83 ~id~lv~~ag 92 (241)
T PRK07454 83 CPDVLINNAG 92 (241)
T ss_pred CCCEEEECCC
Confidence 6799999874
No 336
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.87 E-value=46 Score=34.67 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=48.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.||+ |+++..++..+ ..+..|+.++.++-. . -.++.++.+|+++......+...+... .++
T Consensus 7 ~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~-~g~ 84 (253)
T PRK06172 7 GKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAA-YGR 84 (253)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-hCC
Confidence 5678888864 55555555433 335689999876421 1 124788999999976554443333221 256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 85 id~li~~ag~ 94 (253)
T PRK06172 85 LDYAFNNAGI 94 (253)
T ss_pred CCEEEECCCC
Confidence 7999998753
No 337
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=74.70 E-value=3.6 Score=38.57 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=53.3
Q ss_pred cCHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCch
Q 003302 53 PGGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWA 128 (832)
Q Consensus 53 PGg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~ 128 (832)
-|.++..+++.++ +.|++++.++-. .--++..+ .|..+....+.+.....+ ..+|+|+--. |.
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~-~~~~~~~~~~~i~~~~~~---~~~d~vid~~-----g~-- 68 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHV-IDYSDDDFVEQIRELTGG---RGVDVVIDCV-----GS-- 68 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEE-EETTTSSHHHHHHHHTTT---SSEEEEEESS-----SS--
T ss_pred hHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccccc-cccccccccccccccccc---ccceEEEEec-----Cc--
Confidence 4777778888876 799999998621 11232222 233333344555555443 4679998642 11
Q ss_pred hHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 129 QEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 129 ~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
...+..+..+|+|||++++--+.+
T Consensus 69 ----------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ----------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ----------HHHHHHHHHHhccCCEEEEEEccC
Confidence 134557889999999999854444
No 338
>PRK06500 short chain dehydrogenase; Provisional
Probab=74.64 E-value=45 Score=34.45 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=46.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC--C----CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI--A----PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~--~----~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+..||=.|++ |+++..++..+ ..+..|++++.+.- . .+ ..+.++++|+++......+...+... .+.+|+
T Consensus 6 ~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~ 83 (249)
T PRK06500 6 GKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEA-FGRLDA 83 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHH-hCCCCE
Confidence 4567766654 56666655543 23568888876531 1 11 24678899999876555444433321 256799
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|+++...
T Consensus 84 vi~~ag~ 90 (249)
T PRK06500 84 VFINAGV 90 (249)
T ss_pred EEECCCC
Confidence 9998753
No 339
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.59 E-value=36 Score=36.56 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhC-CCCCEEEEEeCCCC-----C----CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRV-PVGSLVLGLDLVPI-----A----PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~-p~~~~ViGVDLsp~-----~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++. +|++..++..+ ..+..|+.++.+.- . .+....++++|+++......+...+.. .++
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~-~~g 84 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEK-KWG 84 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHH-HhC
Confidence 367899999886 35665555444 23567887765421 0 112245689999998765555544432 226
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+++++...
T Consensus 85 ~iD~lVnnAG~ 95 (271)
T PRK06505 85 KLDFVVHAIGF 95 (271)
T ss_pred CCCEEEECCcc
Confidence 78999999753
No 340
>PRK07856 short chain dehydrogenase; Provisional
Probab=74.59 E-value=51 Score=34.48 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
.+.++|=.|++ |+++..++..+ ..+..|+.++.++-. ...++.++++|+++......+...+.. ..+.+|+|+++
T Consensus 5 ~~k~~lItGas-~gIG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id~vi~~ 82 (252)
T PRK07856 5 TGRVVLVTGGT-RGIGAGIARAFLAAGATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVDAIVE-RHGRLDVLVNN 82 (252)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHHHHHH-HcCCCCEEEEC
Confidence 35677766655 55666555443 235678888776521 223578899999997654444333322 12567999998
Q ss_pred CCC
Q 003302 119 GSP 121 (832)
Q Consensus 119 gap 121 (832)
...
T Consensus 83 ag~ 85 (252)
T PRK07856 83 AGG 85 (252)
T ss_pred CCC
Confidence 753
No 341
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.52 E-value=24 Score=38.65 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-------CC----CCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-------PI----RGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-------~i----~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.++|=.|++. +++..++..+ ..+..|+.++..... .+ ..+.++.+|+++......+...... .
T Consensus 11 ~~k~~lVTGas~-gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~--~ 87 (306)
T PRK07792 11 SGKVAVVTGAAA-GLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG--L 87 (306)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH--h
Confidence 467888777765 4454444333 346688888875321 01 2477889999998766555544333 3
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
+.+|+|+++...
T Consensus 88 g~iD~li~nAG~ 99 (306)
T PRK07792 88 GGLDIVVNNAGI 99 (306)
T ss_pred CCCCEEEECCCC
Confidence 678999998753
No 342
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=74.33 E-value=19 Score=37.31 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=52.3
Q ss_pred CCCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 39 FLRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 39 fl~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.++.+||-+|+|+ |..+..++..++ ..|++++.++-. ...+...+ .+.........+. .... +.||
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~~~~---~~~d 203 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKELGADHV-IDYKEEDLEEELR-LTGG---GGAD 203 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCcee-ccCCcCCHHHHHH-HhcC---CCCC
Confidence 347789999999886 444455555543 689999877521 00111111 1222222222222 1222 4679
Q ss_pred EEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 114 LVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 114 lVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+.... +. ..+..+...|+++|+|++
T Consensus 204 ~vi~~~~----~~-------------~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 204 VVIDAVG----GP-------------ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred EEEECCC----CH-------------HHHHHHHHhcccCCEEEE
Confidence 9997532 10 123346788999999987
No 343
>PRK07062 short chain dehydrogenase; Provisional
Probab=74.24 E-value=50 Score=34.73 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CC--CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PI--RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.++|=.||+.| ++..++..+ ..++.|++++.++-. .. ..+.++.+|+++......+...+...
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~- 84 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR- 84 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh-
Confidence 4678888887655 444444433 346789998876521 11 24667899999987655554444321
Q ss_pred CCcccEEEeCCC
Q 003302 109 VRAFDLVLHDGS 120 (832)
Q Consensus 109 ~~~FDlVlsDga 120 (832)
++.+|+|+++..
T Consensus 85 ~g~id~li~~Ag 96 (265)
T PRK07062 85 FGGVDMLVNNAG 96 (265)
T ss_pred cCCCCEEEECCC
Confidence 367899999875
No 344
>PRK08219 short chain dehydrogenase; Provisional
Probab=74.19 E-value=22 Score=36.10 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=44.9
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
+++|=+|++ |+.+..++..+-....|++++.++-. ..+++.++++|+++......+...+ +..|.|++
T Consensus 4 ~~vlVtG~~-g~iG~~l~~~l~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~id~vi~ 77 (227)
T PRK08219 4 PTALITGAS-RGIGAAIARELAPTHTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQL-----GRLDVLVH 77 (227)
T ss_pred CEEEEecCC-cHHHHHHHHHHHhhCCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhc-----CCCCEEEE
Confidence 467767764 66666555443222679999876421 2346888999999976443332221 24699999
Q ss_pred CCCC
Q 003302 118 DGSP 121 (832)
Q Consensus 118 Dgap 121 (832)
....
T Consensus 78 ~ag~ 81 (227)
T PRK08219 78 NAGV 81 (227)
T ss_pred CCCc
Confidence 8654
No 345
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.08 E-value=42 Score=35.18 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=46.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---C--CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---P--IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
+.++|=.|++ |+++..++..+ ..+..|+.+...... . ..++.++.+|+++......+...+... .+.+|+|+
T Consensus 7 ~k~~lItGas-~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~id~li 84 (255)
T PRK06463 7 GKVALITGGT-RGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKE-FGRVDVLV 84 (255)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHH-cCCCCEEE
Confidence 5678878875 55555555443 235577666433211 1 125788999999987655444433221 25679999
Q ss_pred eCCCC
Q 003302 117 HDGSP 121 (832)
Q Consensus 117 sDgap 121 (832)
++...
T Consensus 85 ~~ag~ 89 (255)
T PRK06463 85 NNAGI 89 (255)
T ss_pred ECCCc
Confidence 98754
No 346
>PRK08278 short chain dehydrogenase; Provisional
Probab=74.00 E-value=45 Score=35.59 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=47.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--C---------------CCCceEEEccCCChhHHHHHHHHH
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--P---------------IRGAVSLEQDITKPECRARVKKVM 104 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--~---------------i~~V~~i~gDIt~~~~~~~l~~~L 104 (832)
+.+||=.||+ |+++..++..+ ..+..|+.++..... . -.++.++.+|+++......+...+
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 84 (273)
T PRK08278 6 GKTLFITGAS-RGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA 84 (273)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4678877774 55666555543 235688888875421 0 024678899999987655444333
Q ss_pred hhccCCcccEEEeCCCC
Q 003302 105 EEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 105 ~~~~~~~FDlVlsDgap 121 (832)
.. ..+.+|+|+++...
T Consensus 85 ~~-~~g~id~li~~ag~ 100 (273)
T PRK08278 85 VE-RFGGIDICVNNASA 100 (273)
T ss_pred HH-HhCCCCEEEECCCC
Confidence 22 12567999999753
No 347
>PRK08628 short chain dehydrogenase; Provisional
Probab=73.97 E-value=51 Score=34.45 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+..+|=.|++ |+++..++..+ ..+..|+.++.++-. .-.++.++.+|+++......+...+... .+.
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~ 83 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAK-FGR 83 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh-cCC
Confidence 35677777764 56666655443 235577777665421 1135788999999987554444333221 256
Q ss_pred ccEEEeCCC
Q 003302 112 FDLVLHDGS 120 (832)
Q Consensus 112 FDlVlsDga 120 (832)
+|+|+++..
T Consensus 84 id~vi~~ag 92 (258)
T PRK08628 84 IDGLVNNAG 92 (258)
T ss_pred CCEEEECCc
Confidence 799999875
No 348
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.95 E-value=30 Score=37.27 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCc-CHHHHHHHHhCC-CCCEEEEEeCCC-----CC----CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAP-GGWMQVAVQRVP-VGSLVLGLDLVP-----IA----PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGP-Gg~sq~La~~~p-~~~~ViGVDLsp-----~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++. +|++..++..+. .++.|+.++.+. .. .+....++++|+++......+...+.. ..+
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~-~~g 82 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKK-DLG 82 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHH-HcC
Confidence 357888899874 577776665543 356788777652 11 112225788999998766555554432 236
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+++++...
T Consensus 83 ~iDilVnnAG~ 93 (274)
T PRK08415 83 KIDFIVHSVAF 93 (274)
T ss_pred CCCEEEECCcc
Confidence 78999999753
No 349
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.91 E-value=51 Score=34.03 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=47.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC---CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI---RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i---~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.+||=.|++ |+++..++..+ ..+..|++++.++-. .+ .++.++.+|+++......+...+.. ..+.+
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~ 82 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALE-RFGSV 82 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH-HhCCC
Confidence 4577767665 45555444433 235689999887521 11 2467899999998765544333211 12567
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|+|++....
T Consensus 83 d~vi~~ag~ 91 (251)
T PRK07231 83 DILVNNAGT 91 (251)
T ss_pred CEEEECCCC
Confidence 999998754
No 350
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=73.83 E-value=68 Score=32.60 Aligned_cols=123 Identities=14% Similarity=0.156 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
++.+|+=|||=+-.. .+.....+...++-.|+.. ...+++=.|+.-|...+. .+...+. +.||+|++||+
T Consensus 25 ~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~---~~~~~l~----~~~d~vv~DPP 95 (162)
T PF10237_consen 25 DDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPE---ELPEELK----GKFDVVVIDPP 95 (162)
T ss_pred CCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChh---hhhhhcC----CCceEEEECCC
Confidence 457888888765443 3333223355677778775 222332146677777653 2333342 67899999987
Q ss_pred CCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCCHHHHHHHHHHcc-cceEEecCCCCCC
Q 003302 121 PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLF-EKVEVDKPAASRS 189 (832)
Q Consensus 121 pnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d~~~ll~~L~~~F-~~V~~~KP~sSR~ 189 (832)
+- +.+ ........+..+++++|.+++.. +..... .+.+++ -+...++|.+.++
T Consensus 96 Fl-----~~e------c~~k~a~ti~~L~k~~~kii~~T--g~~~~~---~~~~ll~~~~~~f~p~h~~~ 149 (162)
T PF10237_consen 96 FL-----SEE------CLTKTAETIRLLLKPGGKIILCT--GEEMEE---LIKKLLGLRMCDFQPEHPNN 149 (162)
T ss_pred CC-----CHH------HHHHHHHHHHHHhCccceEEEec--HHHHHH---HHHHHhCeeEEeEEeccccC
Confidence 41 111 11122334445557777777532 111122 222333 2445567877774
No 351
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.69 E-value=3 Score=46.38 Aligned_cols=64 Identities=23% Similarity=0.115 Sum_probs=42.7
Q ss_pred EEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 46 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 46 VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
||||+||.||++.-+... + --.|.++|+.+.. ..++ .++++||++.... .+ ..+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~-----~~-----~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPS-----DI-----PDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhh-----hC-----CCcCEEEecC
Confidence 699999999999877654 2 2246789998632 3455 5567888875321 11 3469998876
Q ss_pred CCC
Q 003302 120 SPN 122 (832)
Q Consensus 120 apn 122 (832)
++.
T Consensus 68 PCq 70 (315)
T TIGR00675 68 PCQ 70 (315)
T ss_pred CCc
Confidence 543
No 352
>PRK05867 short chain dehydrogenase; Provisional
Probab=73.58 E-value=32 Score=36.06 Aligned_cols=78 Identities=12% Similarity=0.024 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++. +++..++..+ ..+..|+.++.++-. . -.++.++.+|+++......+...+... .+
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~g 85 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE-LG 85 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH-hC
Confidence 467899888755 4555555443 235688888876421 1 134678899999977655444433221 25
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|+++...
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 67999998754
No 353
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=73.55 E-value=6.4 Score=43.25 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=57.5
Q ss_pred CEEEEEcCCcCHHHHH-HHHhCCCCCEEEEEeCCCCC--------C-----CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 44 HAVLDLCAAPGGWMQV-AVQRVPVGSLVLGLDLVPIA--------P-----IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~-La~~~p~~~~ViGVDLsp~~--------~-----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+|+=|||||=-+|.. ++.....+..|+++|+++-. . -.++.|+++|+.+... ..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~-----------dl 190 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY-----------DL 190 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----------G-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----------cc
Confidence 4899999999988754 44443446789999999732 1 1358899999876421 12
Q ss_pred CcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc---CCCCHHHHH-HHHHHcccceEEecCC
Q 003302 110 RAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF---RSQDYSSVL-YCLKQLFEKVEVDKPA 185 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF---rs~d~~~ll-~~L~~~F~~V~~~KP~ 185 (832)
..||+|+.-+- ++..- . .. ..+|......++||+.+++.-- |+.-|..+- +.+. .|....++.|.
T Consensus 191 ~~~DvV~lAal--Vg~~~--e-~K-----~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~-gf~~~~~~hP~ 259 (276)
T PF03059_consen 191 KEYDVVFLAAL--VGMDA--E-PK-----EEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLR-GFEVLAVVHPT 259 (276)
T ss_dssp ---SEEEE-TT---S-------SH-----HHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGT-TEEEEEEE---
T ss_pred ccCCEEEEhhh--ccccc--c-hH-----HHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCC-CeEEEEEECCC
Confidence 56799998642 22110 0 11 3456677889999999987422 222222221 1112 46666666664
No 354
>PRK09242 tropinone reductase; Provisional
Probab=73.47 E-value=57 Score=34.12 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHh-CCCCCEEEEEeCCCCC----------CC--CCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQR-VPVGSLVLGLDLVPIA----------PI--RGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~-~p~~~~ViGVDLsp~~----------~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.++|=.||+.| ++..++.. ...+..|+.++.++-. .. ..+.++.+|+++......+...+.. .
T Consensus 8 ~~k~~lItGa~~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~ 85 (257)
T PRK09242 8 DGQTALITGASKG-IGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED-H 85 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH-H
Confidence 4678888888554 44444433 3345688888766411 11 2467789999997655444443322 1
Q ss_pred CCcccEEEeCCCC
Q 003302 109 VRAFDLVLHDGSP 121 (832)
Q Consensus 109 ~~~FDlVlsDgap 121 (832)
.+.+|+|++....
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 2667999998754
No 355
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=73.09 E-value=51 Score=33.78 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=57.3
Q ss_pred EEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCCCCCCceEEEcc--CCCh--hHHHHHHHHHhhccCCcccEEEeCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIAPIRGAVSLEQD--ITKP--ECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~~i~~V~~i~gD--It~~--~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
+|| +-.|-|.+.....+... .+.-|..||++......--+.+.++ ++.. .....+-..|.+ ..+|.|+|-.
T Consensus 5 rVi-vYGGkGALGSacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~g---ekvDav~CVA 80 (236)
T KOG4022|consen 5 RVI-VYGGKGALGSACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQG---EKVDAVFCVA 80 (236)
T ss_pred eEE-EEcCcchHhHHHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcc---cccceEEEee
Confidence 444 33466766655554443 2456888999875432211122222 2221 112233334555 4569999976
Q ss_pred CCCCCCC-chhHHhHHhHHH--------HHHHHHHHhhcccCcEEEE
Q 003302 120 SPNVGGA-WAQEAMSQNALV--------IDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 120 apnv~g~-w~~D~~~q~~L~--------~~aLk~A~~~LkpGG~fV~ 157 (832)
.-..||. -+.+-+....|. ..+.++|...|+|||.+.+
T Consensus 81 GGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~L 127 (236)
T KOG4022|consen 81 GGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQL 127 (236)
T ss_pred ccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeee
Confidence 4333333 233433333322 2345689999999999976
No 356
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.93 E-value=30 Score=39.96 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
++.++|=.|++ |+++..++..+ ..+..|++++..... ..-+..++.+|+++......+...+... .+.+|
T Consensus 209 ~g~~vlItGas-ggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~-~g~id 286 (450)
T PRK08261 209 AGKVALVTGAA-RGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAER-HGGLD 286 (450)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHh-CCCCC
Confidence 35678877764 55666555543 236689998875321 0113467889999987666555544332 24679
Q ss_pred EEEeCCCC
Q 003302 114 LVLHDGSP 121 (832)
Q Consensus 114 lVlsDgap 121 (832)
+|+++...
T Consensus 287 ~vi~~AG~ 294 (450)
T PRK08261 287 IVVHNAGI 294 (450)
T ss_pred EEEECCCc
Confidence 99998753
No 357
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.83 E-value=56 Score=34.04 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=47.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|+ +|+++..++..+ ..+..|++++.++.. . -..+.++++|+++......+...+... .+.
T Consensus 7 ~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~ 84 (262)
T PRK13394 7 GKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAER-FGS 84 (262)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHH-cCC
Confidence 567775554 466666555543 235678888877621 1 124677899999987655444333221 256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+|+...
T Consensus 85 ~d~vi~~ag~ 94 (262)
T PRK13394 85 VDILVSNAGI 94 (262)
T ss_pred CCEEEECCcc
Confidence 7999998754
No 358
>PRK07890 short chain dehydrogenase; Provisional
Probab=72.73 E-value=37 Score=35.35 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++ |+++..++..+ ..+..|++++.++-. .-.++.++.+|+++......+...+.. .++
T Consensus 4 ~~k~vlItGa~-~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g 81 (258)
T PRK07890 4 KGKVVVVSGVG-PGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE-RFG 81 (258)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH-HcC
Confidence 35678878874 45565555433 245689999876521 013478899999987655444333322 125
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|+++...
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 67999998753
No 359
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=72.62 E-value=27 Score=41.39 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVP 77 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp 77 (832)
|+..|.|+|||+|++.......+. ....++|.++.+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~ 255 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINH 255 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCch
Confidence 667899999999999865544432 113578888775
No 360
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=72.40 E-value=16 Score=38.38 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=46.9
Q ss_pred CCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhH-HhHHHHHHHHHH
Q 003302 67 GSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMS-QNALVIDSVKLA 145 (832)
Q Consensus 67 ~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~-q~~L~~~aLk~A 145 (832)
+..|+.++..+.. ...+.++++|+++......+...+. +.+|+|+++........|.. .+. ...-....++.+
T Consensus 9 G~~Vv~~~r~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~----~~iD~li~nAG~~~~~~~~~-~~~vN~~~~~~l~~~~ 82 (241)
T PRK12428 9 GARVIGVDRREPG-MTLDGFIQADLGDPASIDAAVAALP----GRIDALFNIAGVPGTAPVEL-VARVNFLGLRHLTEAL 82 (241)
T ss_pred CCEEEEEeCCcch-hhhhHhhcccCCCHHHHHHHHHHhc----CCCeEEEECCCCCCCCCHHH-hhhhchHHHHHHHHHH
Confidence 5578888776532 1124567899998765444433332 46799999975432112211 111 111122344555
Q ss_pred HhhcccCcEEEE
Q 003302 146 TQFLAPKGTFVT 157 (832)
Q Consensus 146 ~~~LkpGG~fV~ 157 (832)
...|+++|.+|+
T Consensus 83 ~~~~~~~g~Iv~ 94 (241)
T PRK12428 83 LPRMAPGGAIVN 94 (241)
T ss_pred HHhccCCcEEEE
Confidence 666777888876
No 361
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=72.20 E-value=0.9 Score=47.61 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=25.5
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
..++||||||.|-++.+++... ..|+|.+++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~ 144 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSW 144 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhH
Confidence 3689999999999998887653 3578888875
No 362
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=72.17 E-value=3.6 Score=41.99 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
.+|..|||..||+|.-+.++... +...+|+|+++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~ 223 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDE 223 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSH
T ss_pred ccceeeehhhhccChHHHHHHHc---CCeEEEEeCCH
Confidence 67999999999999876655554 45899999986
No 363
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=71.98 E-value=23 Score=42.34 Aligned_cols=135 Identities=21% Similarity=0.185 Sum_probs=75.1
Q ss_pred CCCCchHHHHHHhcCchhH--HHHHHHhhhhhcCC------CCCCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEeCCC
Q 003302 7 KHRLDKYYRLAKEHGYRSR--ASWKLVQLDSKFSF------LRSSHAVLDLCAAPGGWM-QVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 7 k~~~D~yy~~Ake~gyrsR--aafKLiqi~~kf~f------l~~g~~VLDLGcGPGg~s-q~La~~~p~~~~ViGVDLsp 77 (832)
-++.|-++..|.=.|||+= ++..+-. -|.- ..++.+||=+||||=|.. ..++..++ +.|+++|+++
T Consensus 124 aq~~d~lssma~IAGy~Av~~aa~~~~~---~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~ 198 (509)
T PRK09424 124 AQSLDALSSMANIAGYRAVIEAAHEFGR---FFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRP 198 (509)
T ss_pred CCCcccccchhhhhHHHHHHHHHHHhcc---cCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 3678888998988998762 2222211 1110 246889999999998754 45566665 4899999997
Q ss_pred CC----CCCCceEEEccCCC-------------hhHHHHHHHHHhhccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHH
Q 003302 78 IA----PIRGAVSLEQDITK-------------PECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVID 140 (832)
Q Consensus 78 ~~----~i~~V~~i~gDIt~-------------~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~ 140 (832)
.. ..-++.++..|... ..........+.. ....+|+|+.-... .+...+ ..
T Consensus 199 ~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~-~~~gaDVVIetag~--pg~~aP---------~l 266 (509)
T PRK09424 199 EVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE-QAKEVDIIITTALI--PGKPAP---------KL 266 (509)
T ss_pred HHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh-ccCCCCEEEECCCC--CcccCc---------ch
Confidence 32 11255544333221 1111112222221 11346999975421 010011 01
Q ss_pred HHHHHHhhcccCcEEEEE
Q 003302 141 SVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 141 aLk~A~~~LkpGG~fV~K 158 (832)
.+..+...++|||++|.-
T Consensus 267 it~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 267 ITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHhcCCCCEEEEE
Confidence 135688999999999863
No 364
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=71.86 E-value=13 Score=43.56 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=68.6
Q ss_pred CCCCC-EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 40 LRSSH-AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 40 l~~g~-~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
+.+.. ++|-||||-=-++..+-... -.-|+-+|+++.. ..+...+...|++... |..
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~--------fed-- 112 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV--------FED-- 112 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc--------CCC--
Confidence 34445 89999999998887776542 3469999999731 2244677788888753 233
Q ss_pred CCcccEEEeCCCCCCC-----CCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 109 VRAFDLVLHDGSPNVG-----GAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 109 ~~~FDlVlsDgapnv~-----g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
.+||+|+.-|..+.. ..|+. ..+...+...+++|++||+++.-++
T Consensus 113 -ESFdiVIdkGtlDal~~de~a~~~~------~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 113 -ESFDIVIDKGTLDALFEDEDALLNT------AHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred -cceeEEEecCccccccCCchhhhhh------HHhhHHHhhHHHHhccCCEEEEEEe
Confidence 677998887743321 12322 2244667789999999999887554
No 365
>PF11861 DUF3381: Domain of unknown function (DUF3381); InterPro: IPR024576 This uncharacterised domain is found in eukaryotic rRNA methyltransferases like yeast Spb1 and mammalian homologue Ftsj3. Spb1 is required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [, ].
Probab=71.71 E-value=14 Score=37.41 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003302 350 NRVLNEMEELKYAMDQRKKREKKLLAKKRAKDKARK 385 (832)
Q Consensus 350 ~~~~~el~~l~~~~~~~~kr~kkk~~~~k~k~~~r~ 385 (832)
+++++++++...+..++.+++.++..+..++.+.+|
T Consensus 123 ~el~~~~e~~~~~~k~e~kk~~k~k~K~~~k~~~~m 158 (159)
T PF11861_consen 123 EELEELQEKELAELKREKKKENKRKQKKILKEQLKM 158 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444455555555566666666666666666666654
No 366
>PRK06483 dihydromonapterin reductase; Provisional
Probab=71.47 E-value=45 Score=34.41 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=47.7
Q ss_pred CEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCC-----CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 44 HAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAP-----IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~-----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
.+||-.|++. +++..++..+ ..+..|+.++.++... ..++.++.+|+++......+...+.. .++.+|+|++
T Consensus 3 k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id~lv~ 80 (236)
T PRK06483 3 APILITGAGQ-RIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQ-HTDGLRAIIH 80 (236)
T ss_pred ceEEEECCCC-hHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHh-hCCCccEEEE
Confidence 4677777764 5566665544 3456888888765321 12477889999987655444443332 1256799999
Q ss_pred CCC
Q 003302 118 DGS 120 (832)
Q Consensus 118 Dga 120 (832)
+..
T Consensus 81 ~ag 83 (236)
T PRK06483 81 NAS 83 (236)
T ss_pred CCc
Confidence 875
No 367
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=71.45 E-value=3.5 Score=39.15 Aligned_cols=44 Identities=14% Similarity=0.305 Sum_probs=29.1
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKV 159 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KV 159 (832)
.||+|+|=.- .-|.+-..--.. +...++.++..|+|||.||+.-
T Consensus 1 ~yDvilclSV----tkWIHLn~GD~G-l~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSV----TKWIHLNWGDEG-LKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-----HHHHHHHHHHHH-HHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEe----eEEEEecCcCHH-HHHHHHHHHHhhCCCCEEEEeC
Confidence 3799998421 246654332222 3567889999999999999843
No 368
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=71.32 E-value=38 Score=35.73 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC-----CC-C-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI-----AP-I-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~-----~~-i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.++|=.|++ |+++..++..+ ..+..|++++.+.- .. . ..+.++++|+++......+...+.. ..+.+|+
T Consensus 5 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g~id~ 82 (262)
T TIGR03325 5 GEVVLVTGGA-SGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVA-AFGKIDC 82 (262)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHH-HhCCCCE
Confidence 5677777875 55555554433 34678999887641 11 1 2477889999987654433332221 1256799
Q ss_pred EEeCCC
Q 003302 115 VLHDGS 120 (832)
Q Consensus 115 VlsDga 120 (832)
++++..
T Consensus 83 li~~Ag 88 (262)
T TIGR03325 83 LIPNAG 88 (262)
T ss_pred EEECCC
Confidence 999874
No 369
>PRK09135 pteridine reductase; Provisional
Probab=71.24 E-value=57 Score=33.54 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC----------C--CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA----------P--IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~----------~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+..||=.|| +|+++.+++..+- .+..|++++..... . ...+.++.+|+++......+...+.. .
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~ 82 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVA-A 82 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHH-H
Confidence 3467888886 4677777665542 35689999875321 1 12477889999997655444443322 1
Q ss_pred CCcccEEEeCCCC
Q 003302 109 VRAFDLVLHDGSP 121 (832)
Q Consensus 109 ~~~FDlVlsDgap 121 (832)
.+.+|+|++..+.
T Consensus 83 ~~~~d~vi~~ag~ 95 (249)
T PRK09135 83 FGRLDALVNNASS 95 (249)
T ss_pred cCCCCEEEECCCC
Confidence 2567999999764
No 370
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.22 E-value=66 Score=33.54 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CCC--CceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PIR--GAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i~--~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
++.+||=.|+. |+++..++..+ ..+..|++++.++-. ..+ ++.++.+|++++.....+...+.. ..+.+
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~ 87 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVE-RFGGL 87 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHH-HhCCC
Confidence 56789988876 66666655543 335689999876411 122 457889999997755444333322 12567
Q ss_pred cEEEeCCCCC
Q 003302 113 DLVLHDGSPN 122 (832)
Q Consensus 113 DlVlsDgapn 122 (832)
|+|++..+..
T Consensus 88 d~vi~~ag~~ 97 (264)
T PRK12829 88 DVLVNNAGIA 97 (264)
T ss_pred CEEEECCCCC
Confidence 9999987543
No 371
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=71.06 E-value=49 Score=35.13 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++. +++..++..+ ..+..|+.++.++-. .. .++.++++|+++......+...+... .+
T Consensus 9 ~~k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~g 86 (278)
T PRK08277 9 KGKVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED-FG 86 (278)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-cC
Confidence 356777777764 4555444433 345688888876411 11 24778899999976554444433221 26
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.+|+|+++..
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 7799999875
No 372
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=71.02 E-value=38 Score=35.65 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++ |+++..++..+ ..+..|+.++.++-. .+ .++.++++|++++.....+...+.. ..+.+|
T Consensus 5 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g~id 82 (263)
T PRK06200 5 HGQVALITGGG-SGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVD-AFGKLD 82 (263)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHH-hcCCCC
Confidence 35678878865 55565555443 235688888876411 12 2477899999997655444333322 136779
Q ss_pred EEEeCCCC
Q 003302 114 LVLHDGSP 121 (832)
Q Consensus 114 lVlsDgap 121 (832)
+|+++..+
T Consensus 83 ~li~~ag~ 90 (263)
T PRK06200 83 CFVGNAGI 90 (263)
T ss_pred EEEECCCC
Confidence 99999754
No 373
>PRK08339 short chain dehydrogenase; Provisional
Probab=71.02 E-value=44 Score=35.51 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C--CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P--IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.++|=.|++.| ++..++..+ ..++.|+.++.++-. . -.++.++++|+++......+...+.. +
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~--~ 83 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKN--I 83 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHh--h
Confidence 3678887887754 455444433 246688888876411 1 12578899999998765555544432 3
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
+.+|+++++...
T Consensus 84 g~iD~lv~nag~ 95 (263)
T PRK08339 84 GEPDIFFFSTGG 95 (263)
T ss_pred CCCcEEEECCCC
Confidence 678999998753
No 374
>PRK07109 short chain dehydrogenase; Provisional
Probab=70.67 E-value=39 Score=37.62 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=48.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|+ +|+++..++..+ ..+..|+.++.++-. . -.++.++.+|+++......+...+.. ..+.
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~-~~g~ 85 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEE-ELGP 85 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH-HCCC
Confidence 467777775 456666665443 235688888776411 1 12477889999998765544443322 1267
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 86 iD~lInnAg~ 95 (334)
T PRK07109 86 IDTWVNNAMV 95 (334)
T ss_pred CCEEEECCCc
Confidence 8999998754
No 375
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=70.52 E-value=5.4 Score=44.60 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=66.2
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
..||||+||-||++.-+.... --.|.++|+.+.. ..+...++..||....+.. +.. ..+|+|+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~-----~~~---~~~Dvlig 73 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEA-----LRK---SDVDVLIG 73 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhh-----ccc---cCCCEEEe
Confidence 579999999999997665542 2368889999842 3444566778887654321 111 15699998
Q ss_pred CCCCCCC---C-C-chhHHhHHhHHHHHHHHHHHhhcccCcEEEEE-E--c-C--CCCHHHHHHHHHHc
Q 003302 118 DGSPNVG---G-A-WAQEAMSQNALVIDSVKLATQFLAPKGTFVTK-V--F-R--SQDYSSVLYCLKQL 175 (832)
Q Consensus 118 Dgapnv~---g-~-w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K-V--F-r--s~d~~~ll~~L~~~ 175 (832)
.++|... | . +..|.- ..|....+ .+...++| -+||+. | + . ...+..+...|..+
T Consensus 74 GpPCQ~FS~aG~r~~~~D~R--~~L~~~~~-r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 74 GPPCQDFSIAGKRRGYDDPR--GSLFLEFI-RLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred CCCCcchhhcCcccCCcCcc--ceeeHHHH-HHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHc
Confidence 7654311 1 1 112221 12333333 35567788 666652 1 1 1 12455555556544
No 376
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=70.07 E-value=64 Score=33.77 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=49.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC------C-CCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.+||=.| |+|+++..++..+- .+..|+.++.+.-. . ...+.++.+|+++......+...+... .+.+|+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~ 83 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVER-FGGIDI 83 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH-cCCCCE
Confidence 45777666 55666766665542 35689888876521 1 124778899999987665554444321 256799
Q ss_pred EEeCCC
Q 003302 115 VLHDGS 120 (832)
Q Consensus 115 VlsDga 120 (832)
|+++..
T Consensus 84 li~~ag 89 (257)
T PRK07067 84 LFNNAA 89 (257)
T ss_pred EEECCC
Confidence 999864
No 377
>PRK06194 hypothetical protein; Provisional
Probab=70.04 E-value=66 Score=34.26 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC------C----CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA------P----IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~------~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|++ |+++..++..+- .+..|+.+|.++-. . -.++.++.+|+++......+...+... .+.
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~-~g~ 83 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER-FGA 83 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-cCC
Confidence 4678866654 666666655442 35688888876411 0 124777999999976544443333221 256
Q ss_pred ccEEEeCCCCC
Q 003302 112 FDLVLHDGSPN 122 (832)
Q Consensus 112 FDlVlsDgapn 122 (832)
+|+|++++...
T Consensus 84 id~vi~~Ag~~ 94 (287)
T PRK06194 84 VHLLFNNAGVG 94 (287)
T ss_pred CCEEEECCCCC
Confidence 79999998643
No 378
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.01 E-value=70 Score=32.85 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=43.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCC-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGS 120 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDga 120 (832)
+.++|=.|+ +|+++..++..+ ..+..|++++..+.... .++.++.+|+++. ...+...+ +.+|+|+++..
T Consensus 5 ~k~~lVtGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~--~~~~~~~~-----~~id~lv~~ag 76 (235)
T PRK06550 5 TKTVLITGA-ASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDD--LEPLFDWV-----PSVDILCNTAG 76 (235)
T ss_pred CCEEEEcCC-CchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHH--HHHHHHhh-----CCCCEEEECCC
Confidence 456776665 455565555543 23568998887764332 3577889999886 22222222 56799999875
No 379
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.83 E-value=49 Score=35.11 Aligned_cols=80 Identities=10% Similarity=0.027 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-CcCHHHHHHHHhCC-CCCEEEEEeCCC--------CC-CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCA-APGGWMQVAVQRVP-VGSLVLGLDLVP--------IA-PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGc-GPGg~sq~La~~~p-~~~~ViGVDLsp--------~~-~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|| |.+|++..++..+. .+..|+.+.... +. ....+.++++|+++......+...+.. .++
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g 83 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGK-HWD 83 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHH-HhC
Confidence 3568888888 57788877776553 355777664432 10 123356789999998766555544432 236
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|+++++....
T Consensus 84 ~iD~lVnnAG~~ 95 (261)
T PRK08690 84 GLDGLVHSIGFA 95 (261)
T ss_pred CCcEEEECCccC
Confidence 789999998543
No 380
>PRK06180 short chain dehydrogenase; Provisional
Probab=69.77 E-value=62 Score=34.49 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=49.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-----C--CCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-----P--IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-----~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+..||=.|| +|+++.+++..+- .+..|++++.++-. . -.++.++.+|+++......+...+... .+.+|+
T Consensus 4 ~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~-~~~~d~ 81 (277)
T PRK06180 4 MKTWLITGV-SSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEAT-FGPIDV 81 (277)
T ss_pred CCEEEEecC-CChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHH-hCCCCE
Confidence 456786776 4567776666542 35689999876521 1 125778899999976554443332221 256799
Q ss_pred EEeCCCCC
Q 003302 115 VLHDGSPN 122 (832)
Q Consensus 115 VlsDgapn 122 (832)
|+++....
T Consensus 82 vv~~ag~~ 89 (277)
T PRK06180 82 LVNNAGYG 89 (277)
T ss_pred EEECCCcc
Confidence 99997643
No 381
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=69.75 E-value=73 Score=34.93 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|++ |+++..++..+. .+..|+.++.+.-. +-..+.++.+|+++......+...+... .+
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~~ 82 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRAL-GK 82 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHh-CC
Confidence 35678877764 666666555442 35688888765311 1125788899999976544444333221 24
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|++++..
T Consensus 83 ~iD~li~nAg~ 93 (322)
T PRK07453 83 PLDALVCNAAV 93 (322)
T ss_pred CccEEEECCcc
Confidence 57999999764
No 382
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=69.19 E-value=41 Score=36.02 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=47.4
Q ss_pred EEEEcCCcCHHHHHHHHhCCC-CCEEEEEeCCCCCCC---CCceEEEccCCChhHHHHHHHHHhhccCCcc-cEEEeCCC
Q 003302 46 VLDLCAAPGGWMQVAVQRVPV-GSLVLGLDLVPIAPI---RGAVSLEQDITKPECRARVKKVMEEHGVRAF-DLVLHDGS 120 (832)
Q Consensus 46 VLDLGcGPGg~sq~La~~~p~-~~~ViGVDLsp~~~i---~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F-DlVlsDga 120 (832)
||=.|+ +|.++.+++.++-. +..|+++|..+.... .++.++.+|+++..... ..+ ..+ |+|+|.++
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~-----~~~~d~vih~aa 73 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVD---ELA-----KGVPDAVIHLAA 73 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHH---HHH-----hcCCCEEEEccc
Confidence 676777 89888888877754 568999998764322 46888999999863322 111 223 99999886
Q ss_pred CC
Q 003302 121 PN 122 (832)
Q Consensus 121 pn 122 (832)
..
T Consensus 74 ~~ 75 (314)
T COG0451 74 QS 75 (314)
T ss_pred cC
Confidence 54
No 383
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=69.00 E-value=56 Score=34.20 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=46.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--------C-CCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.+||=.||+ |+++..++..+ ..+..|+.++.++.. . -..+.++.+|+++......+...+... .+.+
T Consensus 8 ~k~vlVtGas-~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~i 85 (260)
T PRK12823 8 GKVVVVTGAA-QGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA-FGRI 85 (260)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH-cCCC
Confidence 5678878865 45555555433 345689988876421 1 124678899999975444333333221 2567
Q ss_pred cEEEeCCC
Q 003302 113 DLVLHDGS 120 (832)
Q Consensus 113 DlVlsDga 120 (832)
|+|+++..
T Consensus 86 d~lv~nAg 93 (260)
T PRK12823 86 DVLINNVG 93 (260)
T ss_pred eEEEECCc
Confidence 99999874
No 384
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.75 E-value=68 Score=33.27 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=49.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+..||=.|+ +|+++..++..+- .+..|++++.++-. .-.++.++.+|+++......+...+... .+.
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~ 81 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVET-FGG 81 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-cCC
Confidence 456775554 6777777766543 35588888876521 1135778999999977655444433321 246
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++.+.
T Consensus 82 ~d~vi~~a~~ 91 (258)
T PRK12429 82 VDILVNNAGI 91 (258)
T ss_pred CCEEEECCCC
Confidence 7999998753
No 385
>PRK06914 short chain dehydrogenase; Provisional
Probab=68.34 E-value=83 Score=33.39 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=45.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHh-CCCCCEEEEEeCCCCC-----------C-CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQR-VPVGSLVLGLDLVPIA-----------P-IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~-~p~~~~ViGVDLsp~~-----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+||=.|| +|+++..++.. ...+..|++++.++-. . -.++.++.+|+++......+...... .
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--~ 79 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE--I 79 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh--c
Confidence 456776664 45555555443 3345688888765421 1 13578899999997654433333322 2
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
+.+|.|++++..
T Consensus 80 ~~id~vv~~ag~ 91 (280)
T PRK06914 80 GRIDLLVNNAGY 91 (280)
T ss_pred CCeeEEEECCcc
Confidence 567999998753
No 386
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=68.26 E-value=40 Score=38.08 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=57.2
Q ss_pred HHHHHHhhhhhcCCCCCCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCCCC----CCceEEEccCCChhHHHHH
Q 003302 26 ASWKLVQLDSKFSFLRSSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIAPI----RGAVSLEQDITKPECRARV 100 (832)
Q Consensus 26 aafKLiqi~~kf~fl~~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~~i----~~V~~i~gDIt~~~~~~~l 100 (832)
.+|.|.++...-.++..+++||=+ -|+|.++.+++..+. .+..|++++..+.... ..+.++.+|+++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~IlVt-GgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~--- 79 (370)
T PLN02695 4 GAYTLAELEREPYWPSEKLRICIT-GAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENC--- 79 (370)
T ss_pred cccchhhcCCCCCCCCCCCEEEEE-CCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHH---
Confidence 457777777766677788999855 467778877776653 3458999986532111 1357788999986432
Q ss_pred HHHHhhccCCcccEEEeCCCC
Q 003302 101 KKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDgap 121 (832)
...+ ..+|+|+|-++.
T Consensus 80 ~~~~-----~~~D~Vih~Aa~ 95 (370)
T PLN02695 80 LKVT-----KGVDHVFNLAAD 95 (370)
T ss_pred HHHH-----hCCCEEEEcccc
Confidence 2222 235999998764
No 387
>PRK07825 short chain dehydrogenase; Provisional
Probab=68.10 E-value=49 Score=35.02 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=49.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
+.+||=.||+ |+++..++..+ ..+..|+.++.++-. .+..+.++++|++++.....+...+... .+.+|+|
T Consensus 5 ~~~ilVtGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~l 82 (273)
T PRK07825 5 GKVVAITGGA-RGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEAD-LGPIDVL 82 (273)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHH-cCCCCEE
Confidence 4677867765 66766665543 235678888766421 1235788999999987655444443321 2567999
Q ss_pred EeCCCCC
Q 003302 116 LHDGSPN 122 (832)
Q Consensus 116 lsDgapn 122 (832)
+++....
T Consensus 83 i~~ag~~ 89 (273)
T PRK07825 83 VNNAGVM 89 (273)
T ss_pred EECCCcC
Confidence 9987543
No 388
>PRK12939 short chain dehydrogenase; Provisional
Probab=68.01 E-value=84 Score=32.39 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=48.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|+ .|+++..++..+- .+..|++++..+-. . -.++.++++|+++......+...+... .+.
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~ 84 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAA-LGG 84 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH-cCC
Confidence 567885664 6777777766543 35678888765421 1 135788999999976554444433221 256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|++....
T Consensus 85 id~vi~~ag~ 94 (250)
T PRK12939 85 LDGLVNNAGI 94 (250)
T ss_pred CCEEEECCCC
Confidence 7999998753
No 389
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=67.96 E-value=22 Score=39.64 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=49.8
Q ss_pred CCCCCEEEEEcCCcCHHHH---HHHHhCCCCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 40 LRSSHAVLDLCAAPGGWMQ---VAVQRVPVGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq---~La~~~p~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+++|.+||=+||| +.++ .+++.++ ...|++++.++.. .--++..+ .+.........+.....+ ..+
T Consensus 174 ~~~g~~VlV~G~g--~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~~Ga~~~-i~~~~~~~~~~i~~~~~~---~g~ 246 (358)
T TIGR03451 174 VKRGDSVAVIGCG--GVGDAAIAGAALAG-ASKIIAVDIDDRKLEWAREFGATHT-VNSSGTDPVEAIRALTGG---FGA 246 (358)
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHcCCceE-EcCCCcCHHHHHHHHhCC---CCC
Confidence 5678899888864 4443 3455543 2259999887532 11122211 122222233333333322 246
Q ss_pred cEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 113 DLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 113 DlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+|+--. |. . .++..+..+|++||++|+
T Consensus 247 d~vid~~-----g~--~----------~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 247 DVVIDAV-----GR--P----------ETYKQAFYARDLAGTVVL 274 (358)
T ss_pred CEEEECC-----CC--H----------HHHHHHHHHhccCCEEEE
Confidence 9988421 11 1 123456788999999987
No 390
>PRK05884 short chain dehydrogenase; Provisional
Probab=67.76 E-value=43 Score=34.74 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=42.4
Q ss_pred EEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHD 118 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsD 118 (832)
++|=.||+ |+++..+++.+. .+..|+.++.++-. ...++.++++|+++......+...+. ..+|+++++
T Consensus 2 ~vlItGas-~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~----~~id~lv~~ 76 (223)
T PRK05884 2 EVLVTGGD-TDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFP----HHLDTIVNV 76 (223)
T ss_pred eEEEEeCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHh----hcCcEEEEC
Confidence 35556655 456665555442 35688888776411 11246788999998765444433332 246999998
Q ss_pred CC
Q 003302 119 GS 120 (832)
Q Consensus 119 ga 120 (832)
..
T Consensus 77 ag 78 (223)
T PRK05884 77 PA 78 (223)
T ss_pred CC
Confidence 64
No 391
>PRK05650 short chain dehydrogenase; Provisional
Probab=67.68 E-value=72 Score=33.78 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=46.8
Q ss_pred EEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 45 AVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+||=.|| +|+++..++..+ ..+..|+.++.++-. . -.++.++++|+++......+...+... .+.+|
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~-~~~id 79 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEK-WGGID 79 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH-cCCCC
Confidence 4665665 556666555443 335688888776421 1 135778899999976555444443321 25679
Q ss_pred EEEeCCCCC
Q 003302 114 LVLHDGSPN 122 (832)
Q Consensus 114 lVlsDgapn 122 (832)
+|+++....
T Consensus 80 ~lI~~ag~~ 88 (270)
T PRK05650 80 VIVNNAGVA 88 (270)
T ss_pred EEEECCCCC
Confidence 999997543
No 392
>PRK08264 short chain dehydrogenase; Validated
Probab=67.67 E-value=59 Score=33.44 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=47.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCC-EEEEEeCCCCCC--C-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGS-LVLGLDLVPIAP--I-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~-~ViGVDLsp~~~--i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
+.+||=+|| +|+.+..++..+- .+. .|+.++.++-.. . .++.++.+|+++......+...+ +.+|+|++
T Consensus 6 ~~~vlItGg-sg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~id~vi~ 79 (238)
T PRK08264 6 GKVVLVTGA-NRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAA-----SDVTILVN 79 (238)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhc-----CCCCEEEE
Confidence 467887885 6666666555432 344 788887765321 1 46888999999876544333322 45699999
Q ss_pred CCCC
Q 003302 118 DGSP 121 (832)
Q Consensus 118 Dgap 121 (832)
....
T Consensus 80 ~ag~ 83 (238)
T PRK08264 80 NAGI 83 (238)
T ss_pred CCCc
Confidence 9764
No 393
>PRK08589 short chain dehydrogenase; Validated
Probab=67.59 E-value=62 Score=34.47 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=47.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----CC----CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----PI----RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----~i----~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.+||=.|++. +++..++..+ ..+..|++++.++-. .+ .++.++.+|+++......+...+.. ..+.+
T Consensus 6 ~k~vlItGas~-gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~g~i 83 (272)
T PRK08589 6 NKVAVITGAST-GIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKE-QFGRV 83 (272)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHH-HcCCc
Confidence 56777677654 4555554433 346789988876310 11 2477889999997655544444332 12567
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|+|+++...
T Consensus 84 d~li~~Ag~ 92 (272)
T PRK08589 84 DVLFNNAGV 92 (272)
T ss_pred CEEEECCCC
Confidence 999999754
No 394
>PLN02253 xanthoxin dehydrogenase
Probab=67.53 E-value=94 Score=33.02 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=49.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.+||=.|+ .|+++..++..+. .+..|+.++..+-. .-.++.++++|+++......+...+... .+.+
T Consensus 18 ~k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~-~g~i 95 (280)
T PLN02253 18 GKVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDK-FGTL 95 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHH-hCCC
Confidence 577888885 4667776665442 45688888875411 1135788999999976654444333221 2567
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|+|++++..
T Consensus 96 d~li~~Ag~ 104 (280)
T PLN02253 96 DIMVNNAGL 104 (280)
T ss_pred CEEEECCCc
Confidence 999998753
No 395
>PRK06181 short chain dehydrogenase; Provisional
Probab=67.45 E-value=67 Score=33.67 Aligned_cols=76 Identities=13% Similarity=0.136 Sum_probs=46.7
Q ss_pred CEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
..||=.| |+|+++..++..+ ..+..|++++.++-. . -.++.++.+|+++......+...+.. ..+.+
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~~i 79 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVA-RFGGI 79 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-HcCCC
Confidence 3566555 5566776665433 235689999876421 1 12477889999997765544443322 12467
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|+|+++..+
T Consensus 80 d~vi~~ag~ 88 (263)
T PRK06181 80 DILVNNAGI 88 (263)
T ss_pred CEEEECCCc
Confidence 999998753
No 396
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=67.19 E-value=66 Score=34.85 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=45.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC--------C----CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA--------P----IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~--------~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+||=.|+ +|.++.+++..+- .+..|++++.++.. . .+++.++.+|+++..... ..+
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~----- 74 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFD---SVV----- 74 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHH---HHH-----
Confidence 466776664 6888877766653 34578887765421 0 136788999999865332 223
Q ss_pred CcccEEEeCCCCC
Q 003302 110 RAFDLVLHDGSPN 122 (832)
Q Consensus 110 ~~FDlVlsDgapn 122 (832)
..+|+|+|.+++.
T Consensus 75 ~~~d~Vih~A~~~ 87 (322)
T PLN02662 75 DGCEGVFHTASPF 87 (322)
T ss_pred cCCCEEEEeCCcc
Confidence 2359999988754
No 397
>PRK12367 short chain dehydrogenase; Provisional
Probab=67.11 E-value=72 Score=33.88 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=41.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCC-----CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAP-----IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~-----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
+.++|-.|++. |++..++..+ ..+..|++++.++... .....++..|+++.... ...+ +.+|+++
T Consensus 14 ~k~~lITGas~-gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~---~~~~-----~~iDilV 84 (245)
T PRK12367 14 GKRIGITGASG-ALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESL---DKQL-----ASLDVLI 84 (245)
T ss_pred CCEEEEEcCCc-HHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHH---HHhc-----CCCCEEE
Confidence 56788777665 4555544433 3466888887764110 11235678899886432 2222 4579999
Q ss_pred eCCCC
Q 003302 117 HDGSP 121 (832)
Q Consensus 117 sDgap 121 (832)
++...
T Consensus 85 nnAG~ 89 (245)
T PRK12367 85 LNHGI 89 (245)
T ss_pred ECCcc
Confidence 99754
No 398
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=67.06 E-value=83 Score=32.82 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|+ .|+++..++..+ ..+..|+.++.++-. . -.++.++.+|+++......+...+.. ..+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~ 87 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA-EHG 87 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH-hcC
Confidence 4678888886 455666555543 236689999876411 1 12477889999997655444433322 125
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
++|+|+++...
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 67999998753
No 399
>PRK06057 short chain dehydrogenase; Provisional
Probab=66.99 E-value=58 Score=34.11 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
.+.+||=.|++ |+++..++..+- .+..|++++.++-. ...+..++++|+++......+...+... .+.+|+|
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~v 83 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAET-YGSVDIA 83 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHH-cCCCCEE
Confidence 36788888885 566666665542 35689998876521 1112367889999976554444433221 2567999
Q ss_pred EeCCC
Q 003302 116 LHDGS 120 (832)
Q Consensus 116 lsDga 120 (832)
+++..
T Consensus 84 i~~ag 88 (255)
T PRK06057 84 FNNAG 88 (255)
T ss_pred EECCC
Confidence 99864
No 400
>PRK06114 short chain dehydrogenase; Provisional
Probab=66.82 E-value=92 Score=32.62 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC----------C-CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA----------P-IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.++|=.| |+|+++..++..+- .+..|+.++.+... . -.++.++.+|+++......+...+... .
T Consensus 7 ~~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~-~ 84 (254)
T PRK06114 7 DGQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE-L 84 (254)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence 456788777 45566766665442 35688888875421 1 124678899999976554444333221 2
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
+.+|+|+++...
T Consensus 85 g~id~li~~ag~ 96 (254)
T PRK06114 85 GALTLAVNAAGI 96 (254)
T ss_pred CCCCEEEECCCC
Confidence 667999998753
No 401
>PRK10458 DNA cytosine methylase; Provisional
Probab=66.79 E-value=7.9 Score=45.60 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=36.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------C---CCCceEEEccCCChh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------P---IRGAVSLEQDITKPE 95 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------~---i~~V~~i~gDIt~~~ 95 (832)
..++|||+||.||++.-+-.. + .-.|.++|+.+.. . .|+...+.+||++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCc
Confidence 468999999999998877543 3 2367889998732 1 245566778888754
No 402
>PRK07774 short chain dehydrogenase; Provisional
Probab=66.66 E-value=58 Score=33.76 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=48.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.| |+|+++..++..+ ..+..|++++..+.. . ..++.++.+|+++......+...+... .+.
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~ 83 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSA-FGG 83 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-hCC
Confidence 56777666 5667777666544 235689999876421 1 124678899999976544444333221 245
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+|+...
T Consensus 84 id~vi~~ag~ 93 (250)
T PRK07774 84 IDYLVNNAAI 93 (250)
T ss_pred CCEEEECCCC
Confidence 7999998753
No 403
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=66.62 E-value=40 Score=37.14 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=45.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCC---CCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPV---GSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~---~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
|..||=+|+|||.....|....+. .-+.+-+|..+.. .+++|+.++ ++++..+...++..+.
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~~~Le~l~nV~Li~-~f~de~~i~~~r~~~~ 129 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHDPILNGLRDVTLVT-RFVDEAYLRRLKKQLH 129 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcccHhhcCCCcEEeeH-hhcCHHHHHHHHHhcc
Confidence 679999999999998888887753 2468888988743 456666554 4777777666666553
No 404
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=66.60 E-value=13 Score=43.65 Aligned_cols=137 Identities=15% Similarity=0.200 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-CCCCC--CceEEEccCCC---hhHHHHHHHHHhhc-cCCcccE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-IAPIR--GAVSLEQDITK---PECRARVKKVMEEH-GVRAFDL 114 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-~~~i~--~V~~i~gDIt~---~~~~~~l~~~L~~~-~~~~FDl 114 (832)
.+..+|=+|-|.|+++..+....| ...|+||.+.| +..++ .+.|.+.|-.. ......+....+.. .-..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 345567777788999998887776 56999999998 33322 23333333110 01112233333311 1146899
Q ss_pred EEeCCC-CCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEE-EcCCCC-HHHHHHHHHHcccceEEe
Q 003302 115 VLHDGS-PNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTK-VFRSQD-YSSVLYCLKQLFEKVEVD 182 (832)
Q Consensus 115 VlsDga-pnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~K-VFrs~d-~~~ll~~L~~~F~~V~~~ 182 (832)
++.|.. +...|.-.+. ..-+...+|..+...|.|-|.|++- |.|... +..++..|..+|..+..+
T Consensus 374 l~~dvds~d~~g~~~pp---~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~ 441 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPP---PAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHH 441 (482)
T ss_pred EEEECCCCCcccCcCCc---hHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHHhhh
Confidence 998751 1122222221 1223456777888999999999984 455554 456667777777665543
No 405
>PRK07814 short chain dehydrogenase; Provisional
Probab=66.25 E-value=78 Score=33.42 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|+ +|+.+.++++.+ ..+..|++++.++-. . -.++.++.+|+++......+...+.. ..+
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~ 86 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVE-AFG 86 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-HcC
Confidence 4678888886 566666655543 235689999876421 0 12477889999997655444333322 125
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|+++...
T Consensus 87 ~id~vi~~Ag~ 97 (263)
T PRK07814 87 RLDIVVNNVGG 97 (263)
T ss_pred CCCEEEECCCC
Confidence 67999998753
No 406
>PRK11524 putative methyltransferase; Provisional
Probab=66.03 E-value=6.1 Score=43.22 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
.+|..|||-+||+|.-+.++. .+ +...+|+|+++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~-~l--gR~~IG~Ei~~ 240 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAK-AS--GRKFIGIEINS 240 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHH-Hc--CCCEEEEeCCH
Confidence 579999999999998665554 44 45899999987
No 407
>PRK08226 short chain dehydrogenase; Provisional
Probab=65.88 E-value=97 Score=32.46 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=48.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+.++|=.|+. |+++..++..+ ..+..|+.++...-. .-..+.++.+|+++......+...+... .+..
T Consensus 6 ~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~~~i 83 (263)
T PRK08226 6 GKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEK-EGRI 83 (263)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH-cCCC
Confidence 5678877775 55665555443 345689988876410 1124678899999977655554443322 2567
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|+|+++...
T Consensus 84 d~vi~~ag~ 92 (263)
T PRK08226 84 DILVNNAGV 92 (263)
T ss_pred CEEEECCCc
Confidence 999998753
No 408
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=65.84 E-value=7.3 Score=44.39 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
+.+-..|+|+|+|+|..++.++-.+ +-.|+|||-+.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq 186 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQ 186 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccch
Confidence 3456789999999999999998765 45899999883
No 409
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=65.65 E-value=17 Score=38.67 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=59.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-----CC-----CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-----IA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-----~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+|.+||.+|-|-|.....+-.+-|. .-+-|+..| |. .-.+|+.+.+-..+ +...|.+ +
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD------vl~~L~d---~ 168 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWED------VLNTLPD---K 168 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccccceEEEecchHh------hhccccc---c
Confidence 67899999999999987777666443 233355554 11 12467777775444 1222333 5
Q ss_pred cccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
.||-|+-|-- +... +-+......+.++|+|+|.|-.
T Consensus 169 ~FDGI~yDTy----~e~y-------Edl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 169 HFDGIYYDTY----SELY-------EDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred CcceeEeech----hhHH-------HHHHHHHHHHhhhcCCCceEEE
Confidence 6899998742 1111 1123344468899999999875
No 410
>PRK06197 short chain dehydrogenase; Provisional
Probab=65.59 E-value=68 Score=34.80 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCC---------C---CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPI---------A---PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~---------~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.+||=.|+ +|+++..++..+- .+..|+.+..++- . +-..+.++++|+++......+...+.. .
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~-~ 92 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA-A 92 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh-h
Confidence 3567886665 5667766665432 3557888766531 0 112477889999998765544444332 1
Q ss_pred CCcccEEEeCCCC
Q 003302 109 VRAFDLVLHDGSP 121 (832)
Q Consensus 109 ~~~FDlVlsDgap 121 (832)
.+.+|+|+++...
T Consensus 93 ~~~iD~li~nAg~ 105 (306)
T PRK06197 93 YPRIDLLINNAGV 105 (306)
T ss_pred CCCCCEEEECCcc
Confidence 2567999999753
No 411
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.39 E-value=6.7 Score=39.93 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=52.1
Q ss_pred CCEEEEEcCCcCHHHH-HHHHhCCCCCEEEEEeCCCCC--CCCCceEEE--ccCCChhHHHHH-HHHHhhccCCcccEEE
Q 003302 43 SHAVLDLCAAPGGWMQ-VAVQRVPVGSLVLGLDLVPIA--PIRGAVSLE--QDITKPECRARV-KKVMEEHGVRAFDLVL 116 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq-~La~~~p~~~~ViGVDLsp~~--~i~~V~~i~--gDIt~~~~~~~l-~~~L~~~~~~~FDlVl 116 (832)
|.+||+||.|--+.+- .+|...| .+.|.-.|-+... .+..+...+ .-++.-...... ...........||.|+
T Consensus 30 g~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 6889999988666543 3344444 4566666665421 111111111 112221111000 0000000115799999
Q ss_pred eCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 117 HDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 117 sDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
|--. -..+.+. ...++.+..+|+|.|.-+ +|.+.+
T Consensus 109 aADC------lFfdE~h-----~sLvdtIk~lL~p~g~Al--~fsPRR 143 (201)
T KOG3201|consen 109 AADC------LFFDEHH-----ESLVDTIKSLLRPSGRAL--LFSPRR 143 (201)
T ss_pred eccc------hhHHHHH-----HHHHHHHHHHhCccccee--EecCcc
Confidence 8532 1123222 345567789999999955 454443
No 412
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=65.37 E-value=42 Score=37.44 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
....||=+|-|-||+......+ +.-..|+-+|+..+. .-+.|..+.||-... ...++
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~f------l~~~~- 192 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLF------LEDLK- 192 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHH------HHHhc-
Confidence 3468999999999998766665 323356666665421 124577777765431 12222
Q ss_pred ccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 107 HGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 107 ~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
-++||+|+.|-+-.++. +-. -.....+....+.|++||..++
T Consensus 193 --~~~~dVii~dssdpvgp-----a~~--lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 193 --ENPFDVIITDSSDPVGP-----ACA--LFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred --cCCceEEEEecCCccch-----HHH--HHHHHHHHHHHHhhCCCcEEEE
Confidence 27889999997533321 111 1123445677889999999987
No 413
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=65.23 E-value=60 Score=40.06 Aligned_cols=77 Identities=21% Similarity=0.197 Sum_probs=48.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+||=.|++ |+++..++..+ ..+..|++++.++-. ....+.++++|+++......+...+.. .+
T Consensus 414 gkvvLVTGas-ggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~-~~ 491 (676)
T TIGR02632 414 RRVAFVTGGA-GGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL-AY 491 (676)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH-hc
Confidence 5778877765 55666555443 346789999887421 112466889999997654433332221 23
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
+.+|+|+++...
T Consensus 492 g~iDilV~nAG~ 503 (676)
T TIGR02632 492 GGVDIVVNNAGI 503 (676)
T ss_pred CCCcEEEECCCC
Confidence 678999999754
No 414
>PRK07024 short chain dehydrogenase; Provisional
Probab=65.11 E-value=1.2e+02 Score=31.74 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=47.0
Q ss_pred CEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC------CC---CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA------PI---RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~------~i---~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+||=.|+ +|+++..++..+. .+..|+.++.++-. .+ .++.++++|+++......+...+.. ..+.+|
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~-~~g~id 80 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIA-AHGLPD 80 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHH-hCCCCC
Confidence 46666665 5667766665543 35688888865310 11 1578899999997654433333221 125679
Q ss_pred EEEeCCCCC
Q 003302 114 LVLHDGSPN 122 (832)
Q Consensus 114 lVlsDgapn 122 (832)
+|++++...
T Consensus 81 ~lv~~ag~~ 89 (257)
T PRK07024 81 VVIANAGIS 89 (257)
T ss_pred EEEECCCcC
Confidence 999997643
No 415
>PRK06841 short chain dehydrogenase; Provisional
Probab=65.07 E-value=82 Score=32.78 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++. +++..++..+ ..+..|++++.++-. ....+.++.+|+++......+...+... .+.+|
T Consensus 14 ~~k~vlItGas~-~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~~d 91 (255)
T PRK06841 14 SGKVAVVTGGAS-GIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISA-FGRID 91 (255)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHH-hCCCC
Confidence 466888788764 4555544433 235688888776421 1124568899999976554444433221 25679
Q ss_pred EEEeCCCC
Q 003302 114 LVLHDGSP 121 (832)
Q Consensus 114 lVlsDgap 121 (832)
+|+++...
T Consensus 92 ~vi~~ag~ 99 (255)
T PRK06841 92 ILVNSAGV 99 (255)
T ss_pred EEEECCCC
Confidence 99998754
No 416
>PRK06484 short chain dehydrogenase; Validated
Probab=65.01 E-value=48 Score=38.92 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.+.+||=.|++.| ++..++..+ ..+..|+.++.++-. .+ .++.++++|++++.....+...+... .+.+|
T Consensus 4 ~~k~~lITGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~g~iD 81 (520)
T PRK06484 4 QSRVVLVTGAAGG-IGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHRE-FGRID 81 (520)
T ss_pred CCeEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHH-hCCCC
Confidence 4678888887766 444443332 335689888776421 11 24677899999987655554443321 25679
Q ss_pred EEEeCCC
Q 003302 114 LVLHDGS 120 (832)
Q Consensus 114 lVlsDga 120 (832)
+|+++..
T Consensus 82 ~li~nag 88 (520)
T PRK06484 82 VLVNNAG 88 (520)
T ss_pred EEEECCC
Confidence 9999864
No 417
>PLN00198 anthocyanidin reductase; Provisional
Probab=64.91 E-value=89 Score=34.37 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=44.4
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC--------C---CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA--------P---IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~--------~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+++||=.|+ +|.++.+++..+- .+..|+++...+.. . .+++.++.+|+++.... ...+ .
T Consensus 9 ~~~vlItG~-~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~---~~~~-----~ 79 (338)
T PLN00198 9 KKTACVIGG-TGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESF---EAPI-----A 79 (338)
T ss_pred CCeEEEECC-chHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHH---HHHH-----h
Confidence 567775554 4888888776553 34578777554321 1 13578899999986532 2223 2
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|.|+|.+++
T Consensus 80 ~~d~vih~A~~ 90 (338)
T PLN00198 80 GCDLVFHVATP 90 (338)
T ss_pred cCCEEEEeCCC
Confidence 35999998875
No 418
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=64.83 E-value=68 Score=33.71 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=46.3
Q ss_pred EEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 45 AVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+||=.|++ |+++..++..+ ..+..|+.++.++-. ...++.++++|+++......+...+.. ..+.+|+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~-~~g~id~ 79 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWE-LLGGIDA 79 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHH-hcCCCCE
Confidence 56767766 45555555443 345688888876421 123578899999997655444433322 1266799
Q ss_pred EEeCCC
Q 003302 115 VLHDGS 120 (832)
Q Consensus 115 VlsDga 120 (832)
|+++..
T Consensus 80 li~naG 85 (259)
T PRK08340 80 LVWNAG 85 (259)
T ss_pred EEECCC
Confidence 999875
No 419
>PRK08251 short chain dehydrogenase; Provisional
Probab=64.78 E-value=1e+02 Score=31.89 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=48.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+||=.|+ +|+++..++..+. .+..|+.++.++-. +-.++.++.+|+++......+...+... .
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~ 79 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDE-L 79 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence 346777774 6777777666543 24578888766421 1124788899999986554444433321 2
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
+.+|+|++++..
T Consensus 80 ~~id~vi~~ag~ 91 (248)
T PRK08251 80 GGLDRVIVNAGI 91 (248)
T ss_pred CCCCEEEECCCc
Confidence 567999998753
No 420
>PRK06484 short chain dehydrogenase; Validated
Probab=64.56 E-value=57 Score=38.28 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=61.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.++|=.|++ ||++..++..+ ..+..|+.++.++-. .+ ..+.++.+|+++......+...+.. ..+.+|+
T Consensus 269 ~k~~lItGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g~id~ 346 (520)
T PRK06484 269 PRVVAITGGA-RGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQA-RWGRLDV 346 (520)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHH-HcCCCCE
Confidence 5677767765 45565555443 235689998876411 11 2466789999998755544443322 1267899
Q ss_pred EEeCCCCCC--CCCc--hhHHhHH---hHH--HHHHHHHHHhhcccCcEEEE
Q 003302 115 VLHDGSPNV--GGAW--AQEAMSQ---NAL--VIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 115 VlsDgapnv--~g~w--~~D~~~q---~~L--~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+++..... ...+ ..+.+.. ..+ ....++.+...|+.+|.||+
T Consensus 347 li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~ 398 (520)
T PRK06484 347 LVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVN 398 (520)
T ss_pred EEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEE
Confidence 999875321 1111 1111111 000 12334555566677888876
No 421
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=64.54 E-value=59 Score=33.71 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+.+||=.||+ |+++..++..+- .+..|++++.++.. .. ..+.++.+|+++......+...+... .+.+
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~ 81 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE-FGHI 81 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH-cCCC
Confidence 36778878875 556666655442 35689988865421 11 24778999999976554444333221 2567
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|+|+++...
T Consensus 82 d~li~~ag~ 90 (248)
T TIGR01832 82 DILVNNAGI 90 (248)
T ss_pred CEEEECCCC
Confidence 999998753
No 422
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.46 E-value=99 Score=31.88 Aligned_cols=78 Identities=13% Similarity=0.062 Sum_probs=49.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+..||=.|+ +|+++..++..+ ..+..|+.++.++-. .. .++.++++|++++.....+...+.. ..+.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~ 84 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKN-ELGS 84 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHH-HcCC
Confidence 456777885 667777665543 346689888876421 11 2577889999997655444443322 1256
Q ss_pred ccEEEeCCCCC
Q 003302 112 FDLVLHDGSPN 122 (832)
Q Consensus 112 FDlVlsDgapn 122 (832)
+|+|++...+.
T Consensus 85 id~vi~~ag~~ 95 (239)
T PRK07666 85 IDILINNAGIS 95 (239)
T ss_pred ccEEEEcCccc
Confidence 79999987543
No 423
>PRK05876 short chain dehydrogenase; Provisional
Probab=64.41 E-value=78 Score=33.97 Aligned_cols=77 Identities=12% Similarity=-0.023 Sum_probs=48.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC--C----C----CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI--A----P----IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~--~----~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++.++- . . -..+.++.+|+++......+...+.. ..+.
T Consensus 6 ~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~-~~g~ 83 (275)
T PRK05876 6 GRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFR-LLGH 83 (275)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCC
Confidence 5678878876 55666555543 23567888876641 1 1 12467789999997755544443322 1256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|++++..
T Consensus 84 id~li~nAg~ 93 (275)
T PRK05876 84 VDVVFSNAGI 93 (275)
T ss_pred CCEEEECCCc
Confidence 7999999854
No 424
>PRK07478 short chain dehydrogenase; Provisional
Probab=64.36 E-value=91 Score=32.56 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=47.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|++ |+++..++..+ ..+..|+.++.++-. . -.++.++.+|+++......+...+... .+.
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~ 83 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER-FGG 83 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh-cCC
Confidence 5678877776 44555554433 235688888766421 1 124778899999987655554443321 256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 84 id~li~~ag~ 93 (254)
T PRK07478 84 LDIAFNNAGT 93 (254)
T ss_pred CCEEEECCCC
Confidence 7999999753
No 425
>PRK06953 short chain dehydrogenase; Provisional
Probab=64.28 E-value=60 Score=33.25 Aligned_cols=73 Identities=22% Similarity=0.184 Sum_probs=45.6
Q ss_pred EEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--C--CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--P--IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
+||=.||+ |+++..++..+ ..+..|++++.++-. . ..++.++.+|+++......+...+.. +.+|+|+++.
T Consensus 3 ~vlvtG~s-g~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---~~~d~vi~~a 78 (222)
T PRK06953 3 TVLIVGAS-RGIGREFVRQYRADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDG---EALDAAVYVA 78 (222)
T ss_pred eEEEEcCC-CchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcC---CCCCEEEECC
Confidence 46656654 66666665544 235689998876421 1 12467889999997655544433332 3579999987
Q ss_pred CC
Q 003302 120 SP 121 (832)
Q Consensus 120 ap 121 (832)
..
T Consensus 79 g~ 80 (222)
T PRK06953 79 GV 80 (222)
T ss_pred Cc
Confidence 53
No 426
>PRK08263 short chain dehydrogenase; Provisional
Probab=63.83 E-value=66 Score=34.20 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=47.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.+||=.|| +|+++..++..+ ..+..|++++.++-. .+ ..+.++++|+++......+...+.. ..+.+|+
T Consensus 3 ~k~vlItGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~d~ 80 (275)
T PRK08263 3 EKVWFITGA-SRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVE-HFGRLDI 80 (275)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHH-HcCCCCE
Confidence 356777775 577777776654 235678888876421 11 2477889999987654333332221 1256799
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|+++...
T Consensus 81 vi~~ag~ 87 (275)
T PRK08263 81 VVNNAGY 87 (275)
T ss_pred EEECCCC
Confidence 9998754
No 427
>PRK06101 short chain dehydrogenase; Provisional
Probab=63.80 E-value=78 Score=32.91 Aligned_cols=71 Identities=15% Similarity=0.040 Sum_probs=42.6
Q ss_pred EEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC--C----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 45 AVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI--A----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~--~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
.||=.|+ +|+++..++..+ ..+..|+.++.++- . ...++.++++|+++......+...+. ...|.+++
T Consensus 3 ~vlItGa-s~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~----~~~d~~i~ 77 (240)
T PRK06101 3 AVLITGA-TSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLP----FIPELWIF 77 (240)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcc----cCCCEEEE
Confidence 4554554 577777666544 34568998887641 1 12458889999999765444333322 12377777
Q ss_pred CCC
Q 003302 118 DGS 120 (832)
Q Consensus 118 Dga 120 (832)
+..
T Consensus 78 ~ag 80 (240)
T PRK06101 78 NAG 80 (240)
T ss_pred cCc
Confidence 653
No 428
>PRK07577 short chain dehydrogenase; Provisional
Probab=63.62 E-value=1.3e+02 Score=30.65 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=44.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
+..||=.| |+|+++..++..+ ..+..|++++..+-...+ ..++.+|+++......+...+... ..+|+|+++...
T Consensus 3 ~k~vlItG-~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~--~~~d~vi~~ag~ 78 (234)
T PRK07577 3 SRTVLVTG-ATKGIGLALSLRLANLGHQVIGIARSAIDDFP-GELFACDLADIEQTAATLAQINEI--HPVDAIVNNVGI 78 (234)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEEeCCcccccC-ceEEEeeCCCHHHHHHHHHHHHHh--CCCcEEEECCCC
Confidence 45677444 5556666555443 235689888876544332 357889999876443333322221 246999998753
No 429
>PRK08303 short chain dehydrogenase; Provisional
Probab=63.60 E-value=1.3e+02 Score=33.17 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC---------C----------CC-CCceEEEccCCChhHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI---------A----------PI-RGAVSLEQDITKPECRARV 100 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~---------~----------~i-~~V~~i~gDIt~~~~~~~l 100 (832)
.+.++|-.|++.| ++..++..+ ..++.|+.++.+.. . .. ..+.++++|++++.....+
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 3678898897655 555555443 34668888876521 0 01 1367789999998655555
Q ss_pred HHHHhhccCCcccEEEeCC
Q 003302 101 KKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 101 ~~~L~~~~~~~FDlVlsDg 119 (832)
...+... ++.+|+++++.
T Consensus 86 ~~~~~~~-~g~iDilVnnA 103 (305)
T PRK08303 86 VERIDRE-QGRLDILVNDI 103 (305)
T ss_pred HHHHHHH-cCCccEEEECC
Confidence 4444322 36789999986
No 430
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.58 E-value=82 Score=32.97 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=49.8
Q ss_pred CCEEEEEcCCc-CHHHHHHHHhCC-CCCEEEEEeCCCC-----------C---------CC-CCceEEEccCCChhHHHH
Q 003302 43 SHAVLDLCAAP-GGWMQVAVQRVP-VGSLVLGLDLVPI-----------A---------PI-RGAVSLEQDITKPECRAR 99 (832)
Q Consensus 43 g~~VLDLGcGP-Gg~sq~La~~~p-~~~~ViGVDLsp~-----------~---------~i-~~V~~i~gDIt~~~~~~~ 99 (832)
+..||=.|++. |+++..++..+. .+..|+.++.++. . .. .++.++.+|+++......
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 84 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNR 84 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 46788888774 677777665552 3557888876521 0 01 247889999999765544
Q ss_pred HHHHHhhccCCcccEEEeCCCC
Q 003302 100 VKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 100 l~~~L~~~~~~~FDlVlsDgap 121 (832)
+...+... .+.+|+|+++...
T Consensus 85 ~~~~~~~~-~g~id~vi~~ag~ 105 (256)
T PRK12748 85 VFYAVSER-LGDPSILINNAAY 105 (256)
T ss_pred HHHHHHHh-CCCCCEEEECCCc
Confidence 44443321 2567999998753
No 431
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=63.53 E-value=76 Score=33.15 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------C----CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------P----IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+..+|=.|++ |+++..++..+ ..+..|+.++.++-. . -..+.++.+|+++......+...+.. ..+
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~ 85 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK-DIG 85 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH-hcC
Confidence 35678878855 55666555544 235688888876421 1 12466788999998766555444332 125
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|++++..
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 68999998753
No 432
>PRK05854 short chain dehydrogenase; Provisional
Probab=63.51 E-value=1.1e+02 Score=33.65 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.+||=.||+ ||++..++..+ ..+..|+.+..+.-. +-..+.++.+|++++.....+...+...
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~- 90 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE- 90 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh-
Confidence 35677766765 56666555443 246688888765310 1124788999999987655554444322
Q ss_pred CCcccEEEeCCCC
Q 003302 109 VRAFDLVLHDGSP 121 (832)
Q Consensus 109 ~~~FDlVlsDgap 121 (832)
.+.+|++++++..
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 2567999999753
No 433
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=63.46 E-value=78 Score=33.08 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=47.8
Q ss_pred CEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC------C----C--CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA------P----I--RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~------~----i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
..||=.|++ |+++..++..+- .+..|+.++.++.. . . ..+.++.+|+++......+...+... .+
T Consensus 3 k~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~-~~ 80 (259)
T PRK12384 3 QVAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEI-FG 80 (259)
T ss_pred CEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHH-cC
Confidence 467878854 666665554442 35689999876421 0 1 24788999999876554444333221 25
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|.|++++..
T Consensus 81 ~id~vv~~ag~ 91 (259)
T PRK12384 81 RVDLLVYNAGI 91 (259)
T ss_pred CCCEEEECCCc
Confidence 67999998753
No 434
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=63.41 E-value=54 Score=32.12 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=48.4
Q ss_pred CCEEEEEcCCcCHH-HHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 43 SHAVLDLCAAPGGW-MQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 43 g~~VLDLGcGPGg~-sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
..+|+++|-|-=-- +..|..+ +..|+++|+.+.....++.++.-||+++.. ... ...|+|.|--+|
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~~a~~g~~~v~DDif~P~l-----~iY-----~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPRKAPEGVNFVVDDIFNPNL-----EIY-----EGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----STTEE---SSS--H-----HHH-----TTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc---CCcEEEEECcccccccCcceeeecccCCCH-----HHh-----cCCcEEEEeCCC
Confidence 34999999876442 3334433 468999999997434789999999999752 122 334999986432
Q ss_pred CCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCCCC
Q 003302 122 NVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQD 164 (832)
Q Consensus 122 nv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs~d 164 (832)
- +|+..++.+|..+ |.-|++..+.+..
T Consensus 81 ~-------------El~~~il~lA~~v---~adlii~pL~~e~ 107 (127)
T PF03686_consen 81 P-------------ELQPPILELAKKV---GADLIIRPLGGES 107 (127)
T ss_dssp T-------------TSHHHHHHHHHHH---T-EEEEE-BTTB-
T ss_pred h-------------HHhHHHHHHHHHh---CCCEEEECCCCCC
Confidence 1 2334455566644 8888887766654
No 435
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=63.14 E-value=88 Score=34.70 Aligned_cols=72 Identities=19% Similarity=0.127 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCCC---------CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIAP---------IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~~---------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+++||=.| |+|+.+.+++..+- .+..|++++..+... ..++.++.+|+++.... ...+.. ..
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~~~---~~ 75 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKL---RKAIAE---FK 75 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHH---HHHHhh---cC
Confidence 367888777 55666666665442 356899998765321 12467889999986543 333333 23
Q ss_pred ccEEEeCCC
Q 003302 112 FDLVLHDGS 120 (832)
Q Consensus 112 FDlVlsDga 120 (832)
+|+|+|.++
T Consensus 76 ~d~vih~A~ 84 (349)
T TIGR02622 76 PEIVFHLAA 84 (349)
T ss_pred CCEEEECCc
Confidence 599999876
No 436
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=63.00 E-value=1.1e+02 Score=31.36 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=46.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC---------CC-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI---------AP-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~---------~~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=+|+ +|+.+..++..+ ..+..|++++-++- .. ..++.++.+|+++......+...+.. ..+.
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~~ 83 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVE-DFGR 83 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH-HhCC
Confidence 467887775 466666655443 23468889877631 01 13477889999987654444332221 1246
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+|..+.
T Consensus 84 ~d~vi~~ag~ 93 (251)
T PRK12826 84 LDILVANAGI 93 (251)
T ss_pred CCEEEECCCC
Confidence 7999998753
No 437
>PRK12742 oxidoreductase; Provisional
Probab=62.74 E-value=87 Score=32.11 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=42.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC---C---CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI---A---PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~---~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
+..||=.|+ +|+++..++..+ ..+..|+.+..... . ...++.++.+|+++..... ..+.. .+.+|+|
T Consensus 6 ~k~vlItGa-sggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~---~~~~~--~~~id~l 79 (237)
T PRK12742 6 GKKVLVLGG-SRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVI---DVVRK--SGALDIL 79 (237)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHH---HHHHH--hCCCcEE
Confidence 567887776 555666665544 23457776644221 0 1124677889998865332 22222 2567999
Q ss_pred EeCCCC
Q 003302 116 LHDGSP 121 (832)
Q Consensus 116 lsDgap 121 (832)
+++...
T Consensus 80 i~~ag~ 85 (237)
T PRK12742 80 VVNAGI 85 (237)
T ss_pred EECCCC
Confidence 998753
No 438
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=62.72 E-value=73 Score=34.75 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC-----------C-CCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA-----------P-IRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~-----------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+.+||=.| |+|+++.+++..+ ..+..|+++..++.. . .+++.++.+|+++..... ..+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~---~~~---- 75 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFE---LAI---- 75 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHH---HHH----
Confidence 357788777 5678777776654 235577776554321 1 135788999999875332 223
Q ss_pred CCcccEEEeCCCC
Q 003302 109 VRAFDLVLHDGSP 121 (832)
Q Consensus 109 ~~~FDlVlsDgap 121 (832)
..+|+|+|.+++
T Consensus 76 -~~~d~vih~A~~ 87 (325)
T PLN02989 76 -DGCETVFHTASP 87 (325)
T ss_pred -cCCCEEEEeCCC
Confidence 235999999864
No 439
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=62.59 E-value=76 Score=33.17 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC------CC----CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA------PI----RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~------~i----~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.|+ +|+++..++..+- .+..|++++.++-. .+ ..+.++++|+++......+...+.. ..+
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~ 86 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEA-EIG 86 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHH-hcC
Confidence 4678888885 5777776665442 35689888776421 11 2377889999997765544443332 235
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
.+|+|+++++..
T Consensus 87 ~~d~li~~ag~~ 98 (255)
T PRK07523 87 PIDILVNNAGMQ 98 (255)
T ss_pred CCCEEEECCCCC
Confidence 679999998643
No 440
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=62.53 E-value=70 Score=33.53 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCC-C-------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPI-A-------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~-~-------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+.+||=.|++.| ++..+++.+ ..+..|+.++.... . . -..+.++.+|+++......+...+... .+.
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~-~g~ 91 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE-FGK 91 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-cCC
Confidence 4678888888654 455444433 24567888766521 0 1 124778999999977655444433221 256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 92 id~li~~ag~ 101 (258)
T PRK06935 92 IDILVNNAGT 101 (258)
T ss_pred CCEEEECCCC
Confidence 7999998753
No 441
>PRK06198 short chain dehydrogenase; Provisional
Probab=62.47 E-value=77 Score=33.09 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCE-EEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSL-VLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~-ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=.|+ +|+++..++..+ ..+.. |+.++..+-. . -..+.++.+|++++.....+...+.. ..
T Consensus 5 ~~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~ 82 (260)
T PRK06198 5 DGKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADE-AF 82 (260)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH-Hh
Confidence 3567886775 556666665544 23456 8888876421 0 12466789999997765544443322 12
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
+.+|+|++....
T Consensus 83 g~id~li~~ag~ 94 (260)
T PRK06198 83 GRLDALVNAAGL 94 (260)
T ss_pred CCCCEEEECCCc
Confidence 567999998753
No 442
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=62.43 E-value=49 Score=36.03 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=41.3
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCCCCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPN 122 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapn 122 (832)
+||=.| |+|-++.++.+.+-..+.|+++|.... ++.+|+++.... ...+... .+|+|+|-++..
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~~~g~V~~~~~~~~-------~~~~Dl~d~~~~---~~~~~~~---~~D~Vih~Aa~~ 65 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALAPLGNLIALDVHST-------DYCGDFSNPEGV---AETVRKI---RPDVIVNAAAHT 65 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhhccCCEEEeccccc-------cccCCCCCHHHH---HHHHHhc---CCCEEEECCccC
Confidence 456555 678888888776644447898886431 346899986543 3334332 359999987643
No 443
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=62.38 E-value=95 Score=32.73 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHH-hCCCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQ-RVPVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~-~~p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++.| ++..++. ....+..|+.++.++-. .. .++.++++|+++......+...+... .+
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~ 86 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE-VG 86 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh-CC
Confidence 4678888888765 4443333 33345678888766421 11 24778999999976554444433221 25
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|+++.+.
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 67999998754
No 444
>PRK06138 short chain dehydrogenase; Provisional
Probab=62.36 E-value=96 Score=32.08 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=47.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
+..+|=.||+ |+++..++..+ ..+..|+++..+.-. .-..+.++++|+++......+...+... .+.+
T Consensus 5 ~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~-~~~i 82 (252)
T PRK06138 5 GRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAAR-WGRL 82 (252)
T ss_pred CcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH-cCCC
Confidence 4577877775 56666555543 235688888765311 0124678899999987655444433221 2567
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|+|+++...
T Consensus 83 d~vi~~ag~ 91 (252)
T PRK06138 83 DVLVNNAGF 91 (252)
T ss_pred CEEEECCCC
Confidence 999998764
No 445
>PRK07677 short chain dehydrogenase; Provisional
Probab=62.30 E-value=1e+02 Score=32.11 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=45.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++|=.||+.| ++..++..+ ..+..|++++.++.. .. ..+.++.+|++++.....+...+.. ..+.
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDE-KFGR 78 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH-HhCC
Confidence 356787777554 444444332 235688888876421 01 3577899999997655444433322 1256
Q ss_pred ccEEEeCCC
Q 003302 112 FDLVLHDGS 120 (832)
Q Consensus 112 FDlVlsDga 120 (832)
+|+|+++..
T Consensus 79 id~lI~~ag 87 (252)
T PRK07677 79 IDALINNAA 87 (252)
T ss_pred ccEEEECCC
Confidence 799999864
No 446
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.27 E-value=1e+02 Score=31.88 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=47.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+..||=.|++ |+++..++..+ ..+..|++++.+.-. .-.++.++.+|+++......+...+... .+.
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~ 80 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQA-LGP 80 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-cCC
Confidence 4677877764 56666555443 335588888776421 1135788999999876554444333221 245
Q ss_pred ccEEEeCCC
Q 003302 112 FDLVLHDGS 120 (832)
Q Consensus 112 FDlVlsDga 120 (832)
+|+|++..+
T Consensus 81 ~d~vi~~ag 89 (250)
T TIGR03206 81 VDVLVNNAG 89 (250)
T ss_pred CCEEEECCC
Confidence 699998875
No 447
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=61.78 E-value=65 Score=35.78 Aligned_cols=72 Identities=14% Similarity=0.003 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
.+++||=.|+ +|.++.+++..+- .+..|++++.++.. ...++.++.+|+++.... ...+ ..
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~-----~~ 79 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSF---DEAV-----KG 79 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHH---HHHH-----cC
Confidence 4678887774 6888887777553 34588888765421 123578899999986533 2223 23
Q ss_pred ccEEEeCCCCC
Q 003302 112 FDLVLHDGSPN 122 (832)
Q Consensus 112 FDlVlsDgapn 122 (832)
+|+|+|.++..
T Consensus 80 ~d~Vih~A~~~ 90 (353)
T PLN02896 80 CDGVFHVAASM 90 (353)
T ss_pred CCEEEECCccc
Confidence 59999998643
No 448
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=61.68 E-value=18 Score=33.27 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=54.9
Q ss_pred CCcCHHHHHHHHhCCCCC-EEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCCCCCCCC
Q 003302 51 AAPGGWMQVAVQRVPVGS-LVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGG 125 (832)
Q Consensus 51 cGPGg~sq~La~~~p~~~-~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDgapnv~g 125 (832)
||.|.++..+++.+...+ .|+.||.++-. .-.++.++.||.+++...... ....++.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a-------~i~~a~~vv~~~~----- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERA-------GIEKADAVVILTD----- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHT-------TGGCESEEEEESS-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhc-------CccccCEEEEccC-----
Confidence 566777777777665556 79999999732 234588999999997654321 2245688887532
Q ss_pred CchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEcCC
Q 003302 126 AWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRS 162 (832)
Q Consensus 126 ~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVFrs 162 (832)
.+..+ ..+....+-|-|...+++.+...
T Consensus 72 ---~d~~n------~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 72 ---DDEEN------LLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp ---SHHHH------HHHHHHHHHHTTTSEEEEEESSH
T ss_pred ---CHHHH------HHHHHHHHHHCCCCeEEEEECCH
Confidence 12221 11123446677888888866443
No 449
>PRK12828 short chain dehydrogenase; Provisional
Probab=61.53 E-value=1.3e+02 Score=30.59 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=47.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC--------CCCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA--------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
+.+||=+|++ |+++..+++.+ ..+..|++++.++-. ...++.++.+|+++......+...+.. .++.+|
T Consensus 7 ~k~vlItGat-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~d 84 (239)
T PRK12828 7 GKVVAITGGF-GGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNR-QFGRLD 84 (239)
T ss_pred CCEEEEECCC-CcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHH-HhCCcC
Confidence 5677777754 67776666544 235689999876521 113567788999987654444333322 125679
Q ss_pred EEEeCCC
Q 003302 114 LVLHDGS 120 (832)
Q Consensus 114 lVlsDga 120 (832)
+|++...
T Consensus 85 ~vi~~ag 91 (239)
T PRK12828 85 ALVNIAG 91 (239)
T ss_pred EEEECCc
Confidence 9999864
No 450
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=61.40 E-value=2.7 Score=46.39 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=55.6
Q ss_pred CCCCCCEEEEEcCCcCHHHH-HHHHhCCCCCEEEEEeCCCCC--C------CCC----ceEEEccCCChhHHHHHHHHHh
Q 003302 39 FLRSSHAVLDLCAAPGGWMQ-VAVQRVPVGSLVLGLDLVPIA--P------IRG----AVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq-~La~~~p~~~~ViGVDLsp~~--~------i~~----V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
+.-.+..|+||-||-|.|+. .+.. .+ ...|+|+|++|-. . ..+ +..+.+|-..+.
T Consensus 191 ~sc~~eviVDLYAGIGYFTlpflV~-ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~---------- 258 (351)
T KOG1227|consen 191 TSCDGEVIVDLYAGIGYFTLPFLVT-AG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK---------- 258 (351)
T ss_pred cccccchhhhhhcccceEEeehhhc-cC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC----------
Confidence 33456899999999999998 4433 33 5689999999831 1 112 222333333221
Q ss_pred hccCCcccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEEEEc
Q 003302 106 EHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVF 160 (832)
Q Consensus 106 ~~~~~~FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~KVF 160 (832)
+....|.|....-|..-+.|. .|+.+|+|-|-=++-|+
T Consensus 259 --~~~~AdrVnLGLlPSse~~W~---------------~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 259 --PRLRADRVNLGLLPSSEQGWP---------------TAIKALKPEGGSILHIH 296 (351)
T ss_pred --ccccchheeeccccccccchH---------------HHHHHhhhcCCcEEEEe
Confidence 013347777766666555554 47889998555333344
No 451
>PRK12747 short chain dehydrogenase; Provisional
Probab=61.09 E-value=1.1e+02 Score=31.97 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=57.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCC---CC-------C-CCCceEEEccCCChhHHHHHHHHHhhc---
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVP---IA-------P-IRGAVSLEQDITKPECRARVKKVMEEH--- 107 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp---~~-------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~--- 107 (832)
+.++|=.||+.| ++..++..+ ..+..|+.++... .. . -..+.++..|+++......+...+...
T Consensus 4 ~k~~lItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK12747 4 GKVALVTGASRG-IGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 82 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 567888886654 555555443 2345676654322 10 0 123567888999875444333322211
Q ss_pred c--CCcccEEEeCCCCCCCCC-ch--hHHhH---HhH--HHHHHHHHHHhhcccCcEEEE
Q 003302 108 G--VRAFDLVLHDGSPNVGGA-WA--QEAMS---QNA--LVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 108 ~--~~~FDlVlsDgapnv~g~-w~--~D~~~---q~~--L~~~aLk~A~~~LkpGG~fV~ 157 (832)
. .+.+|+|+++......+. +. .+.+. ... -....++.+...|+.+|.+|+
T Consensus 83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~ 142 (252)
T PRK12747 83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIIN 142 (252)
T ss_pred hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEE
Confidence 0 126799999976432221 11 11111 111 112334455666677788775
No 452
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=60.52 E-value=48 Score=35.78 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=47.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-----------CCCCCCceEEEccCCChhH-HHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-----------IAPIRGAVSLEQDITKPEC-RARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-----------~~~i~~V~~i~gDIt~~~~-~~~l~~~L~~~~~~ 110 (832)
|..+|=.|.+.|.=.+....++..+..+++||-+. +.|.+.+.|+++|++...- .+.+..++.. ++
T Consensus 5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~--fg 82 (261)
T KOG4169|consen 5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT--FG 82 (261)
T ss_pred CceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHH--hC
Confidence 66777677666553344444444577888887663 2355678999999998432 2333333332 37
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
..|+++.+..
T Consensus 83 ~iDIlINgAG 92 (261)
T KOG4169|consen 83 TIDILINGAG 92 (261)
T ss_pred ceEEEEcccc
Confidence 7899887654
No 453
>PRK12743 oxidoreductase; Provisional
Probab=60.01 E-value=1.3e+02 Score=31.63 Aligned_cols=77 Identities=8% Similarity=-0.016 Sum_probs=46.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC----------CC-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA----------PI-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~----------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+||=.||+ |+++..+++.+ ..+..|+.+...+.. .. .++.++.+|++++.....+...+.. .++
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~ 79 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQ-RLG 79 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH-HcC
Confidence 3567878865 55666665544 235577776433211 11 2478889999997655444443322 125
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
++|+|+++...
T Consensus 80 ~id~li~~ag~ 90 (256)
T PRK12743 80 RIDVLVNNAGA 90 (256)
T ss_pred CCCEEEECCCC
Confidence 67999998753
No 454
>PRK05599 hypothetical protein; Provisional
Probab=59.99 E-value=1.1e+02 Score=32.09 Aligned_cols=75 Identities=15% Similarity=0.009 Sum_probs=47.3
Q ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC---------CC--CCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA---------PI--RGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~---------~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
.||=.|++ +|++..++..+..+..|+.++.++-. .. ..+.++++|+++......+...+.. ..+.+|
T Consensus 2 ~vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~-~~g~id 79 (246)
T PRK05599 2 SILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQE-LAGEIS 79 (246)
T ss_pred eEEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHH-hcCCCC
Confidence 46666765 55676666655556788887765311 11 2367889999998765555444432 136779
Q ss_pred EEEeCCCC
Q 003302 114 LVLHDGSP 121 (832)
Q Consensus 114 lVlsDgap 121 (832)
+++++...
T Consensus 80 ~lv~nag~ 87 (246)
T PRK05599 80 LAVVAFGI 87 (246)
T ss_pred EEEEecCc
Confidence 99998643
No 455
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=59.89 E-value=1.4e+02 Score=30.59 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=41.1
Q ss_pred EEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCCCCC--CCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEeCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVPIAP--IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDG 119 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp~~~--i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVlsDg 119 (832)
.||=.|++.| ++..++..+- .+..|+++....... .+++.++++|+++......+...+ +.+|+|+++.
T Consensus 2 ~vlItGas~g-IG~~ia~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Dls~~~~~~~~~~~~-----~~id~li~~a 75 (235)
T PRK09009 2 NILIVGGSGG-IGKAMVKQLLERYPDATVHATYRHHKPDFQHDNVQWHALDVTDEAEIKQLSEQF-----TQLDWLINCV 75 (235)
T ss_pred EEEEECCCCh-HHHHHHHHHHHhCCCCEEEEEccCCccccccCceEEEEecCCCHHHHHHHHHhc-----CCCCEEEECC
Confidence 4566676554 4444443331 134566555443322 246788999999876544443322 5679999987
Q ss_pred CC
Q 003302 120 SP 121 (832)
Q Consensus 120 ap 121 (832)
..
T Consensus 76 G~ 77 (235)
T PRK09009 76 GM 77 (235)
T ss_pred cc
Confidence 54
No 456
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=59.72 E-value=41 Score=37.34 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=25.2
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp 77 (832)
+.+|.+||=+|||+ |..+..+++.++ ..|++++.++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~ 200 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDP 200 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCH
Confidence 56788999999855 334445566654 4789998876
No 457
>PLN02427 UDP-apiose/xylose synthase
Probab=59.67 E-value=46 Score=37.52 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=46.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCC--CCEEEEEeCCCCC-----C------CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPV--GSLVLGLDLVPIA-----P------IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~--~~~ViGVDLsp~~-----~------i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.++||=.| |+|.++.+++..+-. +..|+++|.++.. . .+++.++.+|+++.... ...+.
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l---~~~~~---- 85 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRL---EGLIK---- 85 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHH---HHHhh----
Confidence 35777454 678888877776543 3579999965421 1 13688999999986533 23332
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
.+|+|+|-++.
T Consensus 86 -~~d~ViHlAa~ 96 (386)
T PLN02427 86 -MADLTINLAAI 96 (386)
T ss_pred -cCCEEEEcccc
Confidence 35999998763
No 458
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=59.65 E-value=21 Score=39.92 Aligned_cols=31 Identities=13% Similarity=-0.113 Sum_probs=23.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLV 76 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLs 76 (832)
..+||==|||.|.++.-|+... -.+-|.+++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G---~~~qGNEfS 181 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLG---FKCQGNEFS 181 (369)
T ss_pred CceEEecCCCchhHHHHHHHhc---ccccccHHH
Confidence 4679999999999998888763 355566655
No 459
>PRK07791 short chain dehydrogenase; Provisional
Probab=59.44 E-value=1.1e+02 Score=33.05 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCC---------C--C----CC----CCceEEEccCCChhHHHHHH
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVP---------I--A----PI----RGAVSLEQDITKPECRARVK 101 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp---------~--~----~i----~~V~~i~gDIt~~~~~~~l~ 101 (832)
.+.++|=.|++.| ++..++..+ ..+..|+.++... - . .+ ..+.++.+|+++......+.
T Consensus 5 ~~k~~lITGas~G-IG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 5 DGRVVIVTGAGGG-IGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 4678888887765 454444333 2456787777643 0 0 01 23667889999976554444
Q ss_pred HHHhhccCCcccEEEeCCCC
Q 003302 102 KVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 102 ~~L~~~~~~~FDlVlsDgap 121 (832)
..+... .+.+|+++++...
T Consensus 84 ~~~~~~-~g~id~lv~nAG~ 102 (286)
T PRK07791 84 DAAVET-FGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHh-cCCCCEEEECCCC
Confidence 333221 2678999998753
No 460
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=59.34 E-value=79 Score=36.14 Aligned_cols=74 Identities=22% Similarity=0.206 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhhcc
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEEHG 108 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~ 108 (832)
.+++||=+| |+|.++.+++..+ ..+..|++++..+.. ..+++.++++|++++.... ..+....
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~---~~~~~~~ 134 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLR---KVLFSEG 134 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHH---HHHHHhC
Confidence 366888777 6788887776644 235688888776421 1357899999999975433 2333210
Q ss_pred CCcccEEEeCCC
Q 003302 109 VRAFDLVLHDGS 120 (832)
Q Consensus 109 ~~~FDlVlsDga 120 (832)
..+|+|++..+
T Consensus 135 -~~~D~Vi~~aa 145 (390)
T PLN02657 135 -DPVDVVVSCLA 145 (390)
T ss_pred -CCCcEEEECCc
Confidence 14699998654
No 461
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=59.30 E-value=93 Score=33.31 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=48.2
Q ss_pred CCCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCCCC------------CCCCceEEEccCCChhHHHHHHHHHhh
Q 003302 39 FLRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIA------------PIRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 39 fl~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp~~------------~i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
|+..+..+.|+||==|..+.+|.+..+ .+.++++|+++-. ..+.+.+.++|.... +..
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~---------l~~ 82 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV---------LEL 82 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc---------cCc
Confidence 346677799999999999999998865 6799999999731 123456666665331 111
Q ss_pred ccCCcccEEEeCCC
Q 003302 107 HGVRAFDLVLHDGS 120 (832)
Q Consensus 107 ~~~~~FDlVlsDga 120 (832)
...+|+|+.-|.
T Consensus 83 --~d~~d~ivIAGM 94 (226)
T COG2384 83 --EDEIDVIVIAGM 94 (226)
T ss_pred --cCCcCEEEEeCC
Confidence 024688887663
No 462
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=59.14 E-value=1e+02 Score=37.76 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=47.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEeCCCC-------C---CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP---VGSLVLGLDLVPI-------A---PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p---~~~~ViGVDLsp~-------~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+++||=.| |+|.++.+++..+- .+..|+++|..+. . ..+++.++.+|+++...... .+..
T Consensus 6 ~~~VLVTG-atGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~---~~~~--- 78 (668)
T PLN02260 6 PKNILITG-AAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNY---LLIT--- 78 (668)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHH---HHhh---
Confidence 46777566 45888888777653 2458999986421 1 13578899999998653322 2222
Q ss_pred CcccEEEeCCCC
Q 003302 110 RAFDLVLHDGSP 121 (832)
Q Consensus 110 ~~FDlVlsDgap 121 (832)
..+|+|+|-++.
T Consensus 79 ~~~D~ViHlAa~ 90 (668)
T PLN02260 79 EGIDTIMHFAAQ 90 (668)
T ss_pred cCCCEEEECCCc
Confidence 346999998764
No 463
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=58.86 E-value=46 Score=36.34 Aligned_cols=96 Identities=17% Similarity=0.265 Sum_probs=49.5
Q ss_pred CCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEeCCCCCC----CCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAP-GGWMQVAVQRVPVGSLVLGLDLVPIAP----IRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGP-Gg~sq~La~~~p~~~~ViGVDLsp~~~----i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
++++.+||-.|+|+ |..+..+++.++. ..|++++.++... ..++..+ .+.........+.....+ ..||+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~i~~~~~~---~~~d~ 239 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEAGATDI-INPKNGDIVEQILELTGG---RGVDC 239 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHhCCcEE-EcCCcchHHHHHHHHcCC---CCCcE
Confidence 46788888876542 3344445666542 3788886654210 0122111 112222222333333322 45799
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+... ++ . ..+..+.+.|+++|+|++
T Consensus 240 vld~~----g~---~----------~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 240 VIEAV----GF---E----------ETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred EEEcc----CC---H----------HHHHHHHHHhhcCCEEEE
Confidence 98532 11 0 134456789999999986
No 464
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=58.82 E-value=8.6 Score=41.81 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=26.6
Q ss_pred cccEEEeCCCCCCCCCchhHHhH-HhHHHHHHHHHHHhhcccCcEEEEE
Q 003302 111 AFDLVLHDGSPNVGGAWAQEAMS-QNALVIDSVKLATQFLAPKGTFVTK 158 (832)
Q Consensus 111 ~FDlVlsDgapnv~g~w~~D~~~-q~~L~~~aLk~A~~~LkpGG~fV~K 158 (832)
+||+|++-.. .+... ...-...+++....+|+|||.||+-
T Consensus 158 ~~D~v~s~fc--------LE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 158 KFDCVISSFC--------LESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp SEEEEEEESS--------HHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred chhhhhhhHH--------HHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4788887542 22111 1122357889999999999999973
No 465
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=58.79 E-value=1.4e+02 Score=30.51 Aligned_cols=74 Identities=18% Similarity=0.094 Sum_probs=46.0
Q ss_pred EEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 45 AVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.||=.| |.|++++.++..+- .+..|++++.++.. .-..+.++++|+++......+...+.. ..+.+
T Consensus 4 ~vlItG-~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-~~~~i 81 (245)
T PRK12824 4 IALVTG-AKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEE-EEGPV 81 (245)
T ss_pred EEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHH-HcCCC
Confidence 566566 56777777766552 34688888766310 112478899999997654443333222 12567
Q ss_pred cEEEeCCC
Q 003302 113 DLVLHDGS 120 (832)
Q Consensus 113 DlVlsDga 120 (832)
|+|+++..
T Consensus 82 d~vi~~ag 89 (245)
T PRK12824 82 DILVNNAG 89 (245)
T ss_pred CEEEECCC
Confidence 99999875
No 466
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=58.35 E-value=20 Score=41.29 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=49.2
Q ss_pred CEEEEEcCCcCHHHHHHHHhCCCC--CEEEEEeCCCCC-------CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVPVG--SLVLGLDLVPIA-------PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p~~--~~ViGVDLsp~~-------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+.||=||| |+.+++++..+..+ +.|+..|.++.. ..+++.+++.|+.+..... ..|. .+|+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~---~li~-----~~d~ 71 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALV---ALIK-----DFDL 71 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHH---HHHh-----cCCE
Confidence 46888999 88888887775433 489999999632 1347999999999976443 3332 3499
Q ss_pred EEeCCCCC
Q 003302 115 VLHDGSPN 122 (832)
Q Consensus 115 VlsDgapn 122 (832)
|++-++|.
T Consensus 72 VIn~~p~~ 79 (389)
T COG1748 72 VINAAPPF 79 (389)
T ss_pred EEEeCCch
Confidence 99877654
No 467
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=57.94 E-value=1.1e+02 Score=31.93 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=+|++. +++..++..+ ..+..|+.++...-. . -.++.++.+|+++......+...+.. .++
T Consensus 10 ~~k~vlVtG~s~-gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~-~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS-KLG 87 (255)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-HcC
Confidence 367899889665 4555444432 335678887765311 0 12467789999997644333322222 125
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|+++.+.
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 67999998753
No 468
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=57.92 E-value=56 Score=36.41 Aligned_cols=71 Identities=20% Similarity=0.168 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC---------------CCCCceEEEccCCChhHHHHHHHHHh
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA---------------PIRGAVSLEQDITKPECRARVKKVME 105 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~---------------~i~~V~~i~gDIt~~~~~~~l~~~L~ 105 (832)
...+||=.| |+|..+.+|...+- .+..|+|+|..+-. ...++.++.+|+++.... ...+.
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l---~~~~~ 89 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDC---QKACK 89 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHH---HHHhh
Confidence 346777666 56777777766553 24589999874311 013577899999986433 22232
Q ss_pred hccCCcccEEEeCCCC
Q 003302 106 EHGVRAFDLVLHDGSP 121 (832)
Q Consensus 106 ~~~~~~FDlVlsDgap 121 (832)
.+|+|+|-++.
T Consensus 90 -----~~d~ViHlAa~ 100 (348)
T PRK15181 90 -----NVDYVLHQAAL 100 (348)
T ss_pred -----CCCEEEECccc
Confidence 25999998864
No 469
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=57.57 E-value=71 Score=35.68 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=50.5
Q ss_pred CCCCCEEEEEcCC--cCHHHHHHHHhCCCCCEEEEEeCCCCC-----CCCCceEEEccCCC-hhHHHHHHHHHhhccCCc
Q 003302 40 LRSSHAVLDLCAA--PGGWMQVAVQRVPVGSLVLGLDLVPIA-----PIRGAVSLEQDITK-PECRARVKKVMEEHGVRA 111 (832)
Q Consensus 40 l~~g~~VLDLGcG--PGg~sq~La~~~p~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~-~~~~~~l~~~L~~~~~~~ 111 (832)
+.+|.+||=.||+ -|.++..+++.++ ..|++++.++-. .--++..+. |..+ ......+.... . +.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~lGa~~vi-~~~~~~~~~~~i~~~~-~---~g 228 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKLGFDEAF-NYKEEPDLDAALKRYF-P---EG 228 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhcCCCEEE-ECCCcccHHHHHHHHC-C---CC
Confidence 5788999888873 3445555666654 578888776511 112332211 1111 11222233221 1 35
Q ss_pred ccEEEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 112 FDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 112 FDlVlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
+|+|+... ++ ..+..+..+|++||+|++
T Consensus 229 vD~v~d~v----G~--------------~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 229 IDIYFDNV----GG--------------DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred cEEEEECC----CH--------------HHHHHHHHHhccCCEEEE
Confidence 79998531 11 123456789999999987
No 470
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=57.32 E-value=1.5e+02 Score=30.84 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=44.6
Q ss_pred EEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC------CC-CCceEEEccCCChhHHHHHHHHHhhccCCcccEEE
Q 003302 45 AVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA------PI-RGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
+||=.|++ |+.+..++..+ ..+..|++++.++-. .+ .++.++.+|+++......+...+.. ..+.+|+|+
T Consensus 2 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~-~~~~id~vi 79 (248)
T PRK10538 2 IVLVTGAT-AGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPA-EWRNIDVLV 79 (248)
T ss_pred EEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHH-HcCCCCEEE
Confidence 45555544 45555555443 346689999887521 11 3578899999997654444333322 124679999
Q ss_pred eCCCC
Q 003302 117 HDGSP 121 (832)
Q Consensus 117 sDgap 121 (832)
+....
T Consensus 80 ~~ag~ 84 (248)
T PRK10538 80 NNAGL 84 (248)
T ss_pred ECCCc
Confidence 98653
No 471
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.04 E-value=1.5e+02 Score=33.22 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCcCH---HHHHHHHhCCCCCEEEEEeCCCCC---------CCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGG---WMQVAVQRVPVGSLVLGLDLVPIA---------PIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg---~sq~La~~~p~~~~ViGVDLsp~~---------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.|..||=-|+|.|- .++.++++ +++++-.|++.-. .+-.+.++.+|+++......+.+.+.. ..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~-e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKK-EV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHH-hc
Confidence 47889999999885 33444444 6688899998632 122488899999998765555554443 23
Q ss_pred CcccEEEeCCCCCC
Q 003302 110 RAFDLVLHDGSPNV 123 (832)
Q Consensus 110 ~~FDlVlsDgapnv 123 (832)
|.+|++++|++...
T Consensus 113 G~V~ILVNNAGI~~ 126 (300)
T KOG1201|consen 113 GDVDILVNNAGIVT 126 (300)
T ss_pred CCceEEEecccccc
Confidence 78899999986443
No 472
>PRK08862 short chain dehydrogenase; Provisional
Probab=56.82 E-value=1.3e+02 Score=31.44 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCcCHHHHHHHH-hCCCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQ-RVPVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~-~~p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++.|. +..++. +...+..|+.++.++-. . -..+.+++.|+++......+...+... .+
T Consensus 4 ~~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~g 81 (227)
T PRK08862 4 KSSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQ-FN 81 (227)
T ss_pred CCeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHH-hC
Confidence 35688888888765 333332 33346788888765421 1 124667889999876554443333221 24
Q ss_pred -cccEEEeCCC
Q 003302 111 -AFDLVLHDGS 120 (832)
Q Consensus 111 -~FDlVlsDga 120 (832)
.+|+++++..
T Consensus 82 ~~iD~li~nag 92 (227)
T PRK08862 82 RAPDVLVNNWT 92 (227)
T ss_pred CCCCEEEECCc
Confidence 6799999964
No 473
>PRK07060 short chain dehydrogenase; Provisional
Probab=56.49 E-value=88 Score=32.19 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEE
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLV 115 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlV 115 (832)
.+.++|=.|++ |+++..++..+. .+..|++++.++-. ...++.++.+|+++......+ +.. .+.+|+|
T Consensus 8 ~~~~~lItGa~-g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~---~~~--~~~~d~v 81 (245)
T PRK07060 8 SGKSVLVTGAS-SGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAA---LAA--AGAFDGL 81 (245)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHH---HHH--hCCCCEE
Confidence 45677756654 556655554432 24578888876421 112467888999986533322 322 1457999
Q ss_pred EeCCCC
Q 003302 116 LHDGSP 121 (832)
Q Consensus 116 lsDgap 121 (832)
+++...
T Consensus 82 i~~ag~ 87 (245)
T PRK07060 82 VNCAGI 87 (245)
T ss_pred EECCCC
Confidence 998754
No 474
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=56.25 E-value=1.1e+02 Score=33.65 Aligned_cols=72 Identities=13% Similarity=-0.019 Sum_probs=44.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-------CC--------CCceEEEccCCChhHHHHHHHHHhh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-------PI--------RGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-------~i--------~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
+++||=.|+ +|+++.+++..+- .+..|++++..+.. .+ .++.++.+|+++..... ..+..
T Consensus 6 ~~~vlVTGa-tGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~~~ 81 (340)
T PLN02653 6 RKVALITGI-TGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLR---RWLDD 81 (340)
T ss_pred CCEEEEECC-CCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHH---HHHHH
Confidence 567776665 5666666665542 35689998764311 11 24788999999865432 23332
Q ss_pred ccCCcccEEEeCCCC
Q 003302 107 HGVRAFDLVLHDGSP 121 (832)
Q Consensus 107 ~~~~~FDlVlsDgap 121 (832)
. .+|+|+|.++.
T Consensus 82 ~---~~d~Vih~A~~ 93 (340)
T PLN02653 82 I---KPDEVYNLAAQ 93 (340)
T ss_pred c---CCCEEEECCcc
Confidence 1 35999999864
No 475
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=56.13 E-value=74 Score=34.01 Aligned_cols=65 Identities=20% Similarity=0.127 Sum_probs=40.6
Q ss_pred CCcCHHHHHHHHhCCC---CCEEEEEeCCC-------CC---CCCCceEEEccCCChhHHHHHHHHHhhccCCcccEEEe
Q 003302 51 AAPGGWMQVAVQRVPV---GSLVLGLDLVP-------IA---PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLH 117 (832)
Q Consensus 51 cGPGg~sq~La~~~p~---~~~ViGVDLsp-------~~---~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDlVls 117 (832)
-|+|..+.++++.+-. ...|++++... +. ..+++.++.+|++++... ...+.. ..+|+|++
T Consensus 6 GatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~~~---~~~d~vi~ 79 (317)
T TIGR01181 6 GGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELV---SRLFTE---HQPDAVVH 79 (317)
T ss_pred cCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHH---HHHHhh---cCCCEEEE
Confidence 3677888877775522 25789887531 11 123678899999987543 333332 23599999
Q ss_pred CCCC
Q 003302 118 DGSP 121 (832)
Q Consensus 118 Dgap 121 (832)
.+++
T Consensus 80 ~a~~ 83 (317)
T TIGR01181 80 FAAE 83 (317)
T ss_pred cccc
Confidence 8754
No 476
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=55.92 E-value=84 Score=30.29 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=46.8
Q ss_pred EEEEEcCCcCHHHHHHHHhC-CC-CCEEEEEeCC---CC-C--------CCCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 45 AVLDLCAAPGGWMQVAVQRV-PV-GSLVLGLDLV---PI-A--------PIRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~-p~-~~~ViGVDLs---p~-~--------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.||=.|+++| ++..++..+ .. ...|+.+..+ +. . +..++.++++|+++......+...+.. ..+
T Consensus 2 ~~lItGa~~g-iG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~ 79 (167)
T PF00106_consen 2 TVLITGASSG-IGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIK-RFG 79 (167)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHH-HHS
T ss_pred EEEEECCCCH-HHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 4666777754 444443332 12 3467777766 11 0 124688999999998766666555542 236
Q ss_pred cccEEEeCCCCCC
Q 003302 111 AFDLVLHDGSPNV 123 (832)
Q Consensus 111 ~FDlVlsDgapnv 123 (832)
.+|+|+++.....
T Consensus 80 ~ld~li~~ag~~~ 92 (167)
T PF00106_consen 80 PLDILINNAGIFS 92 (167)
T ss_dssp SESEEEEECSCTT
T ss_pred ccccccccccccc
Confidence 7899999875443
No 477
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.85 E-value=97 Score=34.31 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC-----C-------CCCCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP-----I-------APIRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp-----~-------~~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
.+.+||=-||..|.=...+..+...+.+++-|-... . .+...+.++++|+++..-.......+.. .+
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~-~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR-HF 89 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH-hc
Confidence 478899999988864444444444455443332221 1 1222589999999997533322222221 24
Q ss_pred CcccEEEeCCCCCCCCCchh---HHhH-HhHH----HHHHHHHHHhhccc-C-cEEEE
Q 003302 110 RAFDLVLHDGSPNVGGAWAQ---EAMS-QNAL----VIDSVKLATQFLAP-K-GTFVT 157 (832)
Q Consensus 110 ~~FDlVlsDgapnv~g~w~~---D~~~-q~~L----~~~aLk~A~~~Lkp-G-G~fV~ 157 (832)
+..|+.++|+.....+.+.. +... .+.. .....+.++..|++ | |.+|+
T Consensus 90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVv 147 (282)
T KOG1205|consen 90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVV 147 (282)
T ss_pred CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEE
Confidence 78899999986554433322 1111 0100 12334556666655 3 88886
No 478
>PRK07074 short chain dehydrogenase; Provisional
Probab=55.83 E-value=1.9e+02 Score=30.18 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=45.9
Q ss_pred CEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC------CC--CCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA------PI--RGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~------~i--~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
.++|=.||+. +++..++..+. .+..|++++.++-. .+ ..+.++.+|+++......+...+.. ..+.+|+
T Consensus 3 k~ilItGat~-~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~d~ 80 (257)
T PRK07074 3 RTALVTGAAG-GIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAA-ERGPVDV 80 (257)
T ss_pred CEEEEECCcc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH-HcCCCCE
Confidence 4566666644 56666655442 35689999876521 12 2477889999997655433332221 1245799
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|++....
T Consensus 81 vi~~ag~ 87 (257)
T PRK07074 81 LVANAGA 87 (257)
T ss_pred EEECCCC
Confidence 9999753
No 479
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=55.78 E-value=73 Score=35.28 Aligned_cols=68 Identities=22% Similarity=0.146 Sum_probs=42.6
Q ss_pred EEEEEcCCcCHHHHHHHHhCCC--CCEEEEEeCCCC-----CCCCCceEEEccCC-ChhHHHHHHHHHhhccCCcccEEE
Q 003302 45 AVLDLCAAPGGWMQVAVQRVPV--GSLVLGLDLVPI-----APIRGAVSLEQDIT-KPECRARVKKVMEEHGVRAFDLVL 116 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p~--~~~ViGVDLsp~-----~~i~~V~~i~gDIt-~~~~~~~l~~~L~~~~~~~FDlVl 116 (832)
+||=+ -|+|..+.+++..+-. +..|+|++.+.. .+.+++.++.+|++ +... +...+ ..+|+|+
T Consensus 3 ~ilVt-GatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~~-----~~~d~Vi 73 (347)
T PRK11908 3 KVLIL-GVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEW---IEYHV-----KKCDVIL 73 (347)
T ss_pred EEEEE-CCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHH---HHHHH-----cCCCEEE
Confidence 45533 3568888888776532 358999997542 23356889999998 4322 22222 2359999
Q ss_pred eCCCC
Q 003302 117 HDGSP 121 (832)
Q Consensus 117 sDgap 121 (832)
|-++.
T Consensus 74 H~aa~ 78 (347)
T PRK11908 74 PLVAI 78 (347)
T ss_pred ECccc
Confidence 97653
No 480
>PRK05866 short chain dehydrogenase; Provisional
Probab=55.65 E-value=1.5e+02 Score=32.10 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=47.6
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.|++ ||++..++..+ ..+..|+.++.++-. . -..+.++.+|+++......+...+... .+.
T Consensus 40 ~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~-~g~ 117 (293)
T PRK05866 40 GKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR-IGG 117 (293)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH-cCC
Confidence 4678877765 55565555433 235688888876411 0 123678899999976555444433321 256
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 118 id~li~~AG~ 127 (293)
T PRK05866 118 VDILINNAGR 127 (293)
T ss_pred CCEEEECCCC
Confidence 7999998653
No 481
>PRK13699 putative methylase; Provisional
Probab=55.57 E-value=13 Score=39.63 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEeCCC
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVP 77 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~p~~~~ViGVDLsp 77 (832)
.+|..|||-.||+|..+.++... +...+|+|+++
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~ 195 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLE 195 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCH
Confidence 57999999999999876655543 45799999987
No 482
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.25 E-value=2.2e+02 Score=29.20 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=47.9
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCC--C-------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPI--A-------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~--~-------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++|=.|+ .|++++.++..+. .+..|+.++.++- . . -..+.++++|+++......+...+... .+.
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~ 82 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAED-FGQ 82 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-cCC
Confidence 567887886 4566666655442 3567899987741 1 1 124678899999876554444433221 246
Q ss_pred ccEEEeCCC
Q 003302 112 FDLVLHDGS 120 (832)
Q Consensus 112 FDlVlsDga 120 (832)
+|+|+++..
T Consensus 83 id~vi~~ag 91 (253)
T PRK08217 83 LNGLINNAG 91 (253)
T ss_pred CCEEEECCC
Confidence 799999864
No 483
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.19 E-value=1.2e+02 Score=31.32 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=44.0
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeC-CCC---------CC-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDL-VPI---------AP-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDL-sp~---------~~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+||=.|++ |+++..++..+. .+..|+.+.. +.- .. -.++.++.+|+++......+...+... .+
T Consensus 4 ~~~vlItGa~-g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~ 81 (250)
T PRK08063 4 GKVALVTGSS-RGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEE-FG 81 (250)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence 4678877775 666666655543 2446665422 210 01 124778899999976544333332221 24
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
..|+|+|+...
T Consensus 82 ~id~vi~~ag~ 92 (250)
T PRK08063 82 RLDVFVNNAAS 92 (250)
T ss_pred CCCEEEECCCC
Confidence 56999998754
No 484
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=54.93 E-value=1.5e+02 Score=30.63 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=45.2
Q ss_pred EEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCccc
Q 003302 45 AVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAFD 113 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FD 113 (832)
++|=.|| .|+++..++..+ ..+..|+.++.++-. . -.++.++.+|+++......+...+.. ..+.+|
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~-~~~~id 79 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAE-KFGGFD 79 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH-HcCCCC
Confidence 4565675 466666665544 235688888766310 1 12477889999997654443333322 125679
Q ss_pred EEEeCCCC
Q 003302 114 LVLHDGSP 121 (832)
Q Consensus 114 lVlsDgap 121 (832)
+|+++...
T Consensus 80 ~vi~~ag~ 87 (254)
T TIGR02415 80 VMVNNAGV 87 (254)
T ss_pred EEEECCCc
Confidence 99998754
No 485
>PRK06482 short chain dehydrogenase; Provisional
Probab=54.60 E-value=1.6e+02 Score=31.25 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=46.2
Q ss_pred CEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCC--C----C-CCCceEEEccCCChhHHHHHHH-HHhhccCCcccE
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPI--A----P-IRGAVSLEQDITKPECRARVKK-VMEEHGVRAFDL 114 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~--~----~-i~~V~~i~gDIt~~~~~~~l~~-~L~~~~~~~FDl 114 (832)
..||=.|| +|+++..++..+- .+..|+++..++- . . ..++.++.+|+++......+.. .+.. .+.+|+
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~~~id~ 79 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAA--LGRIDV 79 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHH--cCCCCE
Confidence 35665555 6778777766542 3567888876541 1 1 1357889999999765443332 2221 255799
Q ss_pred EEeCCCC
Q 003302 115 VLHDGSP 121 (832)
Q Consensus 115 VlsDgap 121 (832)
|+++...
T Consensus 80 vi~~ag~ 86 (276)
T PRK06482 80 VVSNAGY 86 (276)
T ss_pred EEECCCC
Confidence 9998754
No 486
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=54.58 E-value=39 Score=37.48 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=24.8
Q ss_pred CCCCCEEEEEcCCcCHHH-HHHHHh-CCCCCEEEEEeCCC
Q 003302 40 LRSSHAVLDLCAAPGGWM-QVAVQR-VPVGSLVLGLDLVP 77 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~s-q~La~~-~p~~~~ViGVDLsp 77 (832)
+++|.+||=+|||+=|.+ ..+++. ++ .+.|+++|.++
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~ 199 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQ 199 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcH
Confidence 467899999998665533 233443 33 45799999876
No 487
>PRK07035 short chain dehydrogenase; Provisional
Probab=54.51 E-value=98 Score=32.18 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=46.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHh-CCCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQR-VPVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~-~p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.||+.| ++..++.. ...+..|++++.++-. . -..+.+++.|+++......+...+.. .++.
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~ 85 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE-RHGR 85 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH-HcCC
Confidence 467887887755 44444333 2335689999876421 1 12467789999987655444333322 1256
Q ss_pred ccEEEeCCC
Q 003302 112 FDLVLHDGS 120 (832)
Q Consensus 112 FDlVlsDga 120 (832)
+|+|+++++
T Consensus 86 id~li~~ag 94 (252)
T PRK07035 86 LDILVNNAA 94 (252)
T ss_pred CCEEEECCC
Confidence 799999875
No 488
>PRK06139 short chain dehydrogenase; Provisional
Probab=54.42 E-value=1.4e+02 Score=33.27 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=47.7
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.+||=.||+ ||++..++..+ ..+..|+.++.++-. . -..+.++.+|+++......+...+... .+.
T Consensus 7 ~k~vlITGAs-~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g~ 84 (330)
T PRK06139 7 GAVVVITGAS-SGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF-GGR 84 (330)
T ss_pred CCEEEEcCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh-cCC
Confidence 5677767764 55665555433 235688888776411 1 124667889999977655554444332 266
Q ss_pred ccEEEeCCCC
Q 003302 112 FDLVLHDGSP 121 (832)
Q Consensus 112 FDlVlsDgap 121 (832)
+|+|+++...
T Consensus 85 iD~lVnnAG~ 94 (330)
T PRK06139 85 IDVWVNNVGV 94 (330)
T ss_pred CCEEEECCCc
Confidence 8999999753
No 489
>PRK06720 hypothetical protein; Provisional
Probab=54.34 E-value=1.3e+02 Score=30.36 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCcCHHHHHHHHh-CCCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQR-VPVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~-~p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.++|=.|++.| ++..++.. ...+..|+.++.+.-. . -..+.++..|+++......+...+.. .++
T Consensus 15 ~gk~~lVTGa~~G-IG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~-~~G 92 (169)
T PRK06720 15 AGKVAIVTGGGIG-IGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLN-AFS 92 (169)
T ss_pred CCCEEEEecCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-HcC
Confidence 4677887777654 44444332 2345688888876311 1 12356789999986544333332222 236
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.+|+++++..
T Consensus 93 ~iDilVnnAG 102 (169)
T PRK06720 93 RIDMLFQNAG 102 (169)
T ss_pred CCCEEEECCC
Confidence 7899999964
No 490
>PRK05875 short chain dehydrogenase; Provisional
Probab=54.30 E-value=1.5e+02 Score=31.30 Aligned_cols=76 Identities=14% Similarity=0.066 Sum_probs=47.1
Q ss_pred CCEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C---CCCceEEEccCCChhHHHHHHHHHhhccC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P---IRGAVSLEQDITKPECRARVKKVMEEHGV 109 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~---i~~V~~i~gDIt~~~~~~~l~~~L~~~~~ 109 (832)
+.+||=.|++ |+++..++..+ ..+..|++++.++-. . ..++.++.+|+++......+...+.. ..
T Consensus 7 ~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~ 84 (276)
T PRK05875 7 DRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA-WH 84 (276)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH-Hc
Confidence 5688888855 56666666544 235689988865311 0 13567889999987644433332221 12
Q ss_pred CcccEEEeCCC
Q 003302 110 RAFDLVLHDGS 120 (832)
Q Consensus 110 ~~FDlVlsDga 120 (832)
+.+|+|+++..
T Consensus 85 ~~~d~li~~ag 95 (276)
T PRK05875 85 GRLHGVVHCAG 95 (276)
T ss_pred CCCCEEEECCC
Confidence 56799999875
No 491
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=54.17 E-value=36 Score=37.30 Aligned_cols=95 Identities=25% Similarity=0.342 Sum_probs=51.1
Q ss_pred CCCCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC----CCCCceEEEccCCChhHHHHHHHHHhhccCCcccE
Q 003302 40 LRSSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA----PIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDL 114 (832)
Q Consensus 40 l~~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~----~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~FDl 114 (832)
+++|+.|| +-++.||.+..|.+.+. .+.++|+.--..-. .-.++++.. |..+......+.++-.+ ..+|+
T Consensus 144 vkpGhtVl-vhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I-~y~~eD~v~~V~kiTng---KGVd~ 218 (336)
T KOG1197|consen 144 VKPGHTVL-VHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPI-DYSTEDYVDEVKKITNG---KGVDA 218 (336)
T ss_pred CCCCCEEE-EEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCccee-eccchhHHHHHHhccCC---CCcee
Confidence 58999888 55666777666666543 35577777554321 112343221 22222222233333323 34587
Q ss_pred EEeCCCCCCCCCchhHHhHHhHHHHHHHHHHHhhcccCcEEEE
Q 003302 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVT 157 (832)
Q Consensus 115 VlsDgapnv~g~w~~D~~~q~~L~~~aLk~A~~~LkpGG~fV~ 157 (832)
|+-. +|. | -+...+.+|+|+|+||.
T Consensus 219 vyDs----vG~----d----------t~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 219 VYDS----VGK----D----------TFAKSLAALKPMGKMVS 243 (336)
T ss_pred eecc----ccc----h----------hhHHHHHHhccCceEEE
Confidence 7743 221 2 23456789999999996
No 492
>PRK07904 short chain dehydrogenase; Provisional
Probab=52.67 E-value=2.3e+02 Score=29.92 Aligned_cols=77 Identities=10% Similarity=0.017 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCcCHHHHHHHHhC-CC-CCEEEEEeCCCCC----------C--CCCceEEEccCCChhHHHHHHHHHhh
Q 003302 41 RSSHAVLDLCAAPGGWMQVAVQRV-PV-GSLVLGLDLVPIA----------P--IRGAVSLEQDITKPECRARVKKVMEE 106 (832)
Q Consensus 41 ~~g~~VLDLGcGPGg~sq~La~~~-p~-~~~ViGVDLsp~~----------~--i~~V~~i~gDIt~~~~~~~l~~~L~~ 106 (832)
..+.+||=.|| +||++..++..+ .. +..|+.++.++-. . ..++.++++|+++......+...+..
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 45678888887 567777777653 22 3588888776421 1 12578899999987654433333322
Q ss_pred ccCCcccEEEeCCC
Q 003302 107 HGVRAFDLVLHDGS 120 (832)
Q Consensus 107 ~~~~~FDlVlsDga 120 (832)
. +.+|+++++..
T Consensus 85 ~--g~id~li~~ag 96 (253)
T PRK07904 85 G--GDVDVAIVAFG 96 (253)
T ss_pred c--CCCCEEEEeee
Confidence 1 56798887653
No 493
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=52.67 E-value=2.1e+02 Score=29.86 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC---------CC-CCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA---------PI-RGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~---------~i-~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+.+||=.| |+|+++..++..+- .+..|+.++.++-. .. .++.++.+|++++.....+...+... .+
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~-~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER-FG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH-hC
Confidence 467888888 56677777666542 35578888776411 11 24778999999977654443333221 24
Q ss_pred cccEEEeCCC
Q 003302 111 AFDLVLHDGS 120 (832)
Q Consensus 111 ~FDlVlsDga 120 (832)
.+|+|+|.++
T Consensus 89 ~id~vi~~ag 98 (259)
T PRK08213 89 HVDILVNNAG 98 (259)
T ss_pred CCCEEEECCC
Confidence 6799999875
No 494
>PLN02572 UDP-sulfoquinovose synthase
Probab=52.42 E-value=1.3e+02 Score=35.14 Aligned_cols=72 Identities=18% Similarity=0.104 Sum_probs=45.8
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCC-C-----------C---------------CCCceEEEccCCCh
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPI-A-----------P---------------IRGAVSLEQDITKP 94 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~-~-----------~---------------i~~V~~i~gDIt~~ 94 (832)
+++|| +--|+|.++.++++.+- .+..|+++|.... . + ..++.++.+|+++.
T Consensus 47 ~k~VL-VTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~d~ 125 (442)
T PLN02572 47 KKKVM-VIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICDF 125 (442)
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCCCH
Confidence 46777 44577888888877663 3568999873210 0 0 02578899999986
Q ss_pred hHHHHHHHHHhhccCCcccEEEeCCCC
Q 003302 95 ECRARVKKVMEEHGVRAFDLVLHDGSP 121 (832)
Q Consensus 95 ~~~~~l~~~L~~~~~~~FDlVlsDgap 121 (832)
.. +...+.. ..+|+|+|-++.
T Consensus 126 ~~---v~~~l~~---~~~D~ViHlAa~ 146 (442)
T PLN02572 126 EF---LSEAFKS---FEPDAVVHFGEQ 146 (442)
T ss_pred HH---HHHHHHh---CCCCEEEECCCc
Confidence 53 3333433 235999998753
No 495
>PRK06949 short chain dehydrogenase; Provisional
Probab=52.40 E-value=1.8e+02 Score=30.17 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 42 SSHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 42 ~g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
.+..||=.| |+|+++..++..+. .+..|++++.++-. . -.++.++.+|+++......+...+.. ..+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~ 85 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET-EAG 85 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH-hcC
Confidence 357888788 55666666665543 35579988776411 1 12477889999987544444333322 235
Q ss_pred cccEEEeCCCC
Q 003302 111 AFDLVLHDGSP 121 (832)
Q Consensus 111 ~FDlVlsDgap 121 (832)
.+|+|+++...
T Consensus 86 ~~d~li~~ag~ 96 (258)
T PRK06949 86 TIDILVNNSGV 96 (258)
T ss_pred CCCEEEECCCC
Confidence 67999998753
No 496
>PRK07023 short chain dehydrogenase; Provisional
Probab=52.27 E-value=1.4e+02 Score=30.81 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=45.4
Q ss_pred EEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCCC-----CCCceEEEccCCChhHHHHH-HHHHhh-c-cCCcccEE
Q 003302 45 AVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIAP-----IRGAVSLEQDITKPECRARV-KKVMEE-H-GVRAFDLV 115 (832)
Q Consensus 45 ~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~~-----i~~V~~i~gDIt~~~~~~~l-~~~L~~-~-~~~~FDlV 115 (832)
.||=.|| +|+++..++..+- .+..|++++.++... -.++.++.+|+++......+ ...+.. . ..+..|.|
T Consensus 3 ~vlItGa-sggiG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (243)
T PRK07023 3 RAIVTGH-SRGLGAALAEQLLQPGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVLL 81 (243)
T ss_pred eEEEecC-CcchHHHHHHHHHhCCCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceEE
Confidence 5777785 6677776666542 356888888764211 12577889999997654432 221111 0 11346899
Q ss_pred EeCCCC
Q 003302 116 LHDGSP 121 (832)
Q Consensus 116 lsDgap 121 (832)
++++..
T Consensus 82 v~~ag~ 87 (243)
T PRK07023 82 INNAGT 87 (243)
T ss_pred EEcCcc
Confidence 998754
No 497
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=52.22 E-value=1.8e+02 Score=30.02 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=46.8
Q ss_pred CEEEEEcCCcCHHHHHHHHhC-CCCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCcc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRV-PVGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRAF 112 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~-p~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~F 112 (832)
.+||=.| |+|+++..++..+ ..+..|++++.++-. . -.++.++.+|+++......+...+.. ..+..
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~ 79 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAA-EFGGL 79 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH-hcCCC
Confidence 3566566 5577777666543 335689999876521 1 12477889999997654444333322 12456
Q ss_pred cEEEeCCCC
Q 003302 113 DLVLHDGSP 121 (832)
Q Consensus 113 DlVlsDgap 121 (832)
|+|+|+.+.
T Consensus 80 d~vi~~a~~ 88 (255)
T TIGR01963 80 DILVNNAGI 88 (255)
T ss_pred CEEEECCCC
Confidence 999998753
No 498
>PRK05855 short chain dehydrogenase; Validated
Probab=52.22 E-value=1.1e+02 Score=35.95 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=50.3
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
+.++|=.|+ +|+++..++..+. .+..|+.++.+.-. . -.++.++.+|++++.....+...+.. ..+.
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~-~~g~ 392 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRA-EHGV 392 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH-hcCC
Confidence 456776776 6667766665543 35678888876411 0 12578899999998766555544432 1256
Q ss_pred ccEEEeCCCCC
Q 003302 112 FDLVLHDGSPN 122 (832)
Q Consensus 112 FDlVlsDgapn 122 (832)
+|+|+++....
T Consensus 393 id~lv~~Ag~~ 403 (582)
T PRK05855 393 PDIVVNNAGIG 403 (582)
T ss_pred CcEEEECCccC
Confidence 79999998643
No 499
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=52.19 E-value=2e+02 Score=29.67 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=48.2
Q ss_pred CCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCC-CCC---------C-CCCceEEEccCCChhHHHHHHHHHhhccCC
Q 003302 43 SHAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLV-PIA---------P-IRGAVSLEQDITKPECRARVKKVMEEHGVR 110 (832)
Q Consensus 43 g~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLs-p~~---------~-i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~ 110 (832)
+.+||=.|+ +|+++..++.++- .+..|+++.-. +-. . -.++.++.+|+++......+...+.. ..+
T Consensus 6 ~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~ 83 (247)
T PRK12935 6 GKVAIVTGG-AKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN-HFG 83 (247)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH-HcC
Confidence 578888995 6788887776542 35567665322 110 1 12478899999997755444433322 125
Q ss_pred cccEEEeCCCCC
Q 003302 111 AFDLVLHDGSPN 122 (832)
Q Consensus 111 ~FDlVlsDgapn 122 (832)
++|+|+++....
T Consensus 84 ~id~vi~~ag~~ 95 (247)
T PRK12935 84 KVDILVNNAGIT 95 (247)
T ss_pred CCCEEEECCCCC
Confidence 679999997543
No 500
>PRK07102 short chain dehydrogenase; Provisional
Probab=52.08 E-value=1.3e+02 Score=31.05 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=45.6
Q ss_pred CEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEeCCCCC-----------CCCCceEEEccCCChhHHHHHHHHHhhccCCc
Q 003302 44 HAVLDLCAAPGGWMQVAVQRVP-VGSLVLGLDLVPIA-----------PIRGAVSLEQDITKPECRARVKKVMEEHGVRA 111 (832)
Q Consensus 44 ~~VLDLGcGPGg~sq~La~~~p-~~~~ViGVDLsp~~-----------~i~~V~~i~gDIt~~~~~~~l~~~L~~~~~~~ 111 (832)
++||=.|| +|+++..++..+- .+..|++++.++-. .-.++.++++|+++......+...+. ..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~----~~ 76 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLP----AL 76 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHh----hc
Confidence 35776774 5677776665542 35689998876521 12357889999999765444433332 24
Q ss_pred ccEEEeCCC
Q 003302 112 FDLVLHDGS 120 (832)
Q Consensus 112 FDlVlsDga 120 (832)
+|+|+++..
T Consensus 77 ~d~vv~~ag 85 (243)
T PRK07102 77 PDIVLIAVG 85 (243)
T ss_pred CCEEEECCc
Confidence 599998764
Done!