Query 003304
Match_columns 832
No_of_seqs 197 out of 1105
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 20:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 5E-162 1E-166 1458.1 87.6 804 27-832 25-832 (900)
2 KOG1041 Translation initiation 100.0 3E-132 6E-137 1188.4 70.6 738 33-832 43-807 (876)
3 KOG1042 Germ-line stem cell di 100.0 5E-123 1E-127 1003.2 43.8 685 40-832 87-802 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 5.3E-89 1.1E-93 769.8 39.3 379 428-832 1-398 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 6.2E-85 1.3E-89 744.2 43.3 407 397-832 3-422 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 5.5E-76 1.2E-80 658.5 37.0 354 441-832 2-367 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 1.8E-61 3.8E-66 526.0 24.2 264 553-832 1-273 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 8.1E-39 1.7E-43 360.7 24.7 258 536-832 96-375 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 7.8E-23 1.7E-27 195.0 10.4 130 267-407 1-135 (135)
10 cd02825 PAZ PAZ domain, named 99.8 8.6E-19 1.9E-23 161.8 9.9 106 266-383 1-115 (115)
11 cd02846 PAZ_argonaute_like PAZ 99.8 1.3E-18 2.8E-23 160.9 11.1 107 267-383 2-114 (114)
12 cd02845 PAZ_piwi_like PAZ doma 99.7 2.3E-18 5E-23 158.3 8.0 106 267-384 2-115 (117)
13 PF08699 DUF1785: Domain of un 99.5 2.1E-14 4.4E-19 111.4 4.5 51 215-266 2-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.4 2.1E-13 4.5E-18 128.1 6.4 84 290-384 27-133 (135)
15 cd02843 PAZ_dicer_like PAZ dom 98.6 8.1E-08 1.8E-12 87.1 5.9 65 291-368 38-106 (122)
16 COG1431 Argonaute homolog, imp 96.4 0.13 2.7E-06 58.5 16.6 317 448-830 306-638 (685)
17 PF08459 UvrC_HhH_N: UvrC Heli 89.8 2.5 5.3E-05 41.1 9.6 108 626-763 9-120 (155)
18 TIGR00194 uvrC excinuclease AB 81.5 10 0.00022 44.9 11.1 110 629-768 382-498 (574)
19 PRK14672 uvrC excinuclease ABC 76.1 22 0.00048 42.6 11.5 111 626-767 452-565 (691)
20 PRK12306 uvrC excinuclease ABC 73.4 32 0.00069 40.3 11.9 108 627-766 365-476 (519)
21 PRK14670 uvrC excinuclease ABC 70.4 41 0.00088 40.0 12.0 113 627-767 357-473 (574)
22 PRK14667 uvrC excinuclease ABC 66.9 42 0.0009 39.8 11.1 108 627-767 360-471 (567)
23 cd06559 Endonuclease_V Endonuc 65.9 41 0.00089 34.4 9.5 80 626-720 23-104 (208)
24 PRK14669 uvrC excinuclease ABC 64.2 52 0.0011 39.5 11.3 109 627-766 395-507 (624)
25 PRK14671 uvrC excinuclease ABC 60.8 60 0.0013 39.0 11.1 107 627-766 414-524 (621)
26 PRK00558 uvrC excinuclease ABC 55.4 1.1E+02 0.0023 36.9 11.9 100 627-758 382-485 (598)
27 PRK14666 uvrC excinuclease ABC 54.6 1E+02 0.0022 37.4 11.3 100 627-758 471-571 (694)
28 PRK14668 uvrC excinuclease ABC 50.6 92 0.002 37.1 10.3 105 627-766 374-484 (577)
29 PF00763 THF_DHG_CYH: Tetrahyd 49.4 35 0.00076 31.4 5.3 69 536-605 16-85 (117)
30 PRK14185 bifunctional 5,10-met 44.5 62 0.0013 35.0 6.9 67 538-604 19-86 (293)
31 PRK14171 bifunctional 5,10-met 42.4 89 0.0019 33.7 7.7 65 540-604 22-87 (288)
32 PRK14187 bifunctional 5,10-met 41.6 93 0.002 33.6 7.7 66 540-605 22-88 (294)
33 PRK14184 bifunctional 5,10-met 41.4 88 0.0019 33.7 7.5 68 537-604 18-86 (286)
34 PRK14176 bifunctional 5,10-met 39.8 1.1E+02 0.0024 32.9 8.0 66 540-605 28-94 (287)
35 PRK14183 bifunctional 5,10-met 39.0 96 0.0021 33.3 7.3 56 549-604 30-86 (281)
36 PLN02897 tetrahydrofolate dehy 37.9 98 0.0021 34.2 7.3 65 540-604 76-141 (345)
37 PRK14192 bifunctional 5,10-met 37.7 1E+02 0.0022 33.2 7.4 74 540-613 23-99 (283)
38 PRK10792 bifunctional 5,10-met 37.3 97 0.0021 33.4 7.1 68 538-605 21-89 (285)
39 PLN02516 methylenetetrahydrofo 36.7 1.2E+02 0.0026 32.8 7.7 65 541-605 30-95 (299)
40 PRK14186 bifunctional 5,10-met 36.4 1.1E+02 0.0024 33.1 7.4 66 540-605 22-88 (297)
41 PRK14177 bifunctional 5,10-met 36.3 1.2E+02 0.0026 32.7 7.5 65 540-604 23-88 (284)
42 PRK14188 bifunctional 5,10-met 36.1 1.2E+02 0.0026 32.9 7.6 67 539-605 21-88 (296)
43 PLN02616 tetrahydrofolate dehy 36.0 1.2E+02 0.0026 33.7 7.6 65 540-604 93-158 (364)
44 PRK14174 bifunctional 5,10-met 35.0 1.2E+02 0.0026 32.9 7.4 66 540-605 21-87 (295)
45 PRK14180 bifunctional 5,10-met 34.6 1.2E+02 0.0026 32.6 7.2 65 540-604 21-86 (282)
46 PRK14168 bifunctional 5,10-met 34.4 1.2E+02 0.0025 33.0 7.1 68 537-604 20-88 (297)
47 PRK14169 bifunctional 5,10-met 33.4 1.3E+02 0.0029 32.3 7.3 65 539-604 20-85 (282)
48 PRK14179 bifunctional 5,10-met 33.2 1.4E+02 0.0031 32.1 7.5 66 540-605 22-88 (284)
49 PRK14191 bifunctional 5,10-met 32.4 1.4E+02 0.0031 32.1 7.4 66 540-605 21-87 (285)
50 PRK14166 bifunctional 5,10-met 32.2 1.3E+02 0.0029 32.3 7.0 64 540-604 21-85 (282)
51 PRK14172 bifunctional 5,10-met 31.8 1.4E+02 0.0031 32.0 7.2 69 537-605 19-88 (278)
52 PRK14193 bifunctional 5,10-met 31.4 1.4E+02 0.0031 32.1 7.1 57 549-605 31-88 (284)
53 COG0322 UvrC Nuclease subunit 31.4 3.2E+02 0.0068 32.7 10.6 108 627-767 378-487 (581)
54 PRK14194 bifunctional 5,10-met 31.1 1.5E+02 0.0032 32.2 7.3 56 549-604 32-88 (301)
55 PRK14190 bifunctional 5,10-met 29.2 1.6E+02 0.0035 31.7 7.1 65 540-605 23-88 (284)
56 PRK14170 bifunctional 5,10-met 25.9 1.9E+02 0.0042 31.1 7.0 56 549-604 30-86 (284)
57 PRK14173 bifunctional 5,10-met 25.8 1.9E+02 0.0041 31.2 6.9 57 549-605 28-85 (287)
58 PRK14181 bifunctional 5,10-met 25.5 2E+02 0.0043 31.1 7.0 56 549-604 25-81 (287)
59 PRK14178 bifunctional 5,10-met 25.1 2.3E+02 0.0051 30.4 7.4 58 548-605 24-82 (279)
60 PRK14189 bifunctional 5,10-met 24.7 2.4E+02 0.0052 30.4 7.4 55 550-604 32-87 (285)
61 PRK14167 bifunctional 5,10-met 24.6 2.1E+02 0.0047 31.0 7.1 57 549-605 30-87 (297)
62 KOG2488 Acetyltransferase (GNA 24.4 1.3E+02 0.0029 30.1 4.9 45 50-98 105-149 (202)
63 PRK14182 bifunctional 5,10-met 24.3 2.1E+02 0.0046 30.8 6.9 56 549-604 29-85 (282)
64 KOG3123 Diphthine synthase [Tr 24.0 95 0.0021 31.4 3.9 45 552-599 133-177 (272)
65 COG0190 FolD 5,10-methylene-te 23.8 2.2E+02 0.0048 30.6 6.8 66 539-604 19-85 (283)
66 PRK14175 bifunctional 5,10-met 22.1 2.4E+02 0.0053 30.4 6.9 55 550-604 32-87 (286)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=5e-162 Score=1458.08 Aligned_cols=804 Identities=71% Similarity=1.158 Sum_probs=700.7
Q ss_pred ccCCCcccccCCCCCCCCCCEEEEEEEEEEEEeccCCeEEEEEEEEeecCCcccccCchhhHHHHHHHHHHhhhhhcCCc
Q 003304 27 HVDLPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGKR 106 (832)
Q Consensus 27 ~~~~~~~~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~~~~~~~~ 106 (832)
....+.+.+++||||||.|++|.|+||||+|++..++..+|||||+|+|+.++++++++++++|+.++++++...+.+..
T Consensus 25 ~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 104 (900)
T PLN03202 25 KPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKD 104 (900)
T ss_pred cccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCc
Confidence 33556668899999999999999999999999765567899999999876545666778889999999887755666668
Q ss_pred eEEeCCcceeecCCCCCCceEEEEEeccchhccc--CCCCCCCCCC-CCCCCCCCCCCCCceEEEEEEEecccChHHHHH
Q 003304 107 FAYDGEKSLYTVGPLPQNKFEFTVVLEESRAKQQ--NGSPRGRDSP-IGPGKRSKHSFQSKTFMVEISFATKIPLRSIAL 183 (832)
Q Consensus 107 ~~yDG~~~lyS~~~L~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~~~~~i~l~~l~~ 183 (832)
+||||+++|||+.+|+.+..++.|+++++...++ ++++++.+.| +++.+|.+...+.+.|+|+|+++++|++.+|.+
T Consensus 105 ~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~ 184 (900)
T PLN03202 105 FAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIAN 184 (900)
T ss_pred eeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHH
Confidence 9999999999999999877788888765321110 0111111111 112222223346789999999999999999999
Q ss_pred HHcCCCCCchhHHHHHHHHHHhccccccCceecccccccCCCCCeeecCCCEEeeecceEEEEeeCCeeeEeeeeeeeee
Q 003304 184 ALKGNEVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMI 263 (832)
Q Consensus 184 ~l~g~~~~~~~~~iq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDv~~~~F 263 (832)
||.|.......++||+||+|||+.+...+++.+||+||.++.....++++|+|+|+||++|||+++++|+||+|+++++|
T Consensus 185 ~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F 264 (900)
T PLN03202 185 ALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI 264 (900)
T ss_pred HHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeee
Confidence 99998777788999999999999988777888899999876555568999999999999999999999999999999999
Q ss_pred eccccHHHHHHHhcCCCCCCcccHHHHHhhhcCcEEEeeccCceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeH
Q 003304 264 LKPGPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITV 343 (832)
Q Consensus 264 ~~~~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV 343 (832)
+++++|+|+|.+..+.++....++.++.++|+|++|.++|++++|+|.||++.++++.+|.+++.+.+|+ ++.+++|||
T Consensus 265 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~-~~~~~~iSv 343 (900)
T PLN03202 265 VQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGN-EVETVEITV 343 (900)
T ss_pred ecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccc-cCCcceEEH
Confidence 9999999999987655443334677899999999999999999999999999999999998764322121 112468999
Q ss_pred HHHHHHhcCCccccCC-CCcEEecCCCCCcccccccceEEcCCccccccCCHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 003304 344 YDYFTQHCRIELTYSA-YLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDALRSY 422 (832)
Q Consensus 344 ~eYf~~~Y~i~L~~~p-~lP~v~vg~~~k~~~lP~Elc~i~~~Q~~~~~l~~~q~~~mik~~~~~P~~R~~~i~~~~~~l 422 (832)
+|||+++||++|+| | ++|||++|+.++++|||||||.|+|+|+++++|++.|+++||++|+.+|++|.+.|.++++.+
T Consensus 344 ~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~ 422 (900)
T PLN03202 344 YDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSS 422 (900)
T ss_pred HHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 99999999999999 6 999999999888999999999999999999999999999999999999999999999999998
Q ss_pred cCCCcccccceeeEEcccceeeeeEEecCCeeeeCCccccCCCCCccccCCceeecccccceEEEEEeCCCccHHHHHHH
Q 003304 423 SYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSARCDTSHISRE 502 (832)
Q Consensus 423 ~~~~~~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~~p~~l~~W~vv~~~~~~~~~~f~~~ 502 (832)
+++.+++|++|||+|+.+|++|+||+|+||+|.||+++.+.|.+|+||+++++|++|+.+++|+|++|....++.+|++.
T Consensus 423 ~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~f~~~ 502 (900)
T PLN03202 423 NYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRHLVRD 502 (900)
T ss_pred CCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEecCCCccceEEEEEecCchhHHHHHHH
Confidence 88889999999999999999999999999999999877677889999999999999999999999988766689999999
Q ss_pred HHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCcee
Q 003304 503 LINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIAT 582 (832)
Q Consensus 503 L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~T 582 (832)
|.+.|+.+||.+.+|..+....++.......++++.+++.+++.....++|+|||+|+++++++|+.||++||+++||+|
T Consensus 503 l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~T 582 (900)
T PLN03202 503 LIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVT 582 (900)
T ss_pred HHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEEcCCCCcchHHHHHHHHhhccCccc
Confidence 99999999999998865433322222223346789999999887666789999999974478899999999999999999
Q ss_pred eeeccccCChhHHHHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecCCccc
Q 003304 583 QCISPTKINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLIS 662 (832)
Q Consensus 583 Qcv~~~~~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~~~~~ 662 (832)
|||..++.++|+++|||||||+||||+||.|+++.+..+|++.+.+|||||+||+||++++.+.|||||+|||+|++.++
T Consensus 583 Qcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~ 662 (900)
T PLN03202 583 QCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLIS 662 (900)
T ss_pred EEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCccccc
Confidence 99987778999999999999999999999997654456888888899999999999998765579999999999976789
Q ss_pred eeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHH
Q 003304 663 RYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQH 742 (832)
Q Consensus 663 ~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~ 742 (832)
+|++.+++|.+++|++++|..+...+.+++|+.++|+.||+++++.+|++|||||||||||||.+|+++|+++|++||++
T Consensus 663 ~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~ 742 (900)
T PLN03202 663 RYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKF 742 (900)
T ss_pred ceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986544334567899999999999877899999999999999999999999999999999999
Q ss_pred hCCCCCCcEEEEEEeeccceeeecCCCCCCCCCceeeecccccCCcceEEEeeecCCccccCCCeEEEEecCCCCChHHH
Q 003304 743 LGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDL 822 (832)
Q Consensus 743 ~~~~~~pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~l 822 (832)
++++|+|+||||||+||||+|||+.+..+||+||||||++||+|..||||||||.++|||||||||+||+||+++++|+|
T Consensus 743 ~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~l 822 (900)
T PLN03202 743 LDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDL 822 (900)
T ss_pred hCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHH
Confidence 98889999999999999999999987779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccC
Q 003304 823 QNLIHSLSYV 832 (832)
Q Consensus 823 q~lt~~LCy~ 832 (832)
|+|||+|||+
T Consensus 823 q~lty~lc~~ 832 (900)
T PLN03202 823 QELVHSLSYV 832 (900)
T ss_pred HHHHHHHhhh
Confidence 9999999996
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-132 Score=1188.40 Aligned_cols=738 Identities=41% Similarity=0.624 Sum_probs=637.2
Q ss_pred ccccCCCCCCCCCCEEEEEEEEEEEEeccCCeE-EEEEEEEeecCCcccccCchhh-HHHHHHHHHHhh-hhhcCCceEE
Q 003304 33 HSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAV-FYHYTVTISGEDKRIAKGKGIG-RKVVDKLYQTYS-AELAGKRFAY 109 (832)
Q Consensus 33 ~~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~~~-~y~Y~V~i~~~~~~~~~~k~~~-r~i~~~l~~~~~-~~~~~~~~~y 109 (832)
..++.|||.|+.|+.+.|.+|||.++++.++.. ++||+|++.+ +..++..+ +.+++.+..... ..+.+..++|
T Consensus 43 ~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 118 (876)
T KOG1041|consen 43 RFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFN----EHGRRKVQCLRFFLDKVKNPELFELKSGGPAY 118 (876)
T ss_pred cccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecC----CCCchHHHHHHHHHHHHhccccccccCCcccc
Confidence 588899999999999999999999887755555 8999999954 33344444 355555544432 2356667779
Q ss_pred eCCcceeecCCCCCCce--EEEEEeccchhcccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEecccChHHHHHHHcC
Q 003304 110 DGEKSLYTVGPLPQNKF--EFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKG 187 (832)
Q Consensus 110 DG~~~lyS~~~L~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~l~~l~~~l~g 187 (832)
||+++|||..+|+.... .+.+..+.+ ...|+++|+++..+.+..+..++.+
T Consensus 119 Dg~~~lyt~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~ik~~~~~~~~~~~~~~~~ 171 (876)
T KOG1041|consen 119 DGQKTLYTKLELPEGVVTLDFDVISPKE---------------------------WKKFKVSIKKVSEVVLTKLNGFIYT 171 (876)
T ss_pred cCCceeEeccccccccceEEEEecCCCC---------------------------CcceEEEEEecccccccCccccccC
Confidence 99999999777774233 344433221 1129999999999999999999988
Q ss_pred CCCCchhHHHHHHHHHHhccccccCceecccccccCCCCCeeecCCCEEeeecceEEEEeeCCeeeEeeeeeeeeeeccc
Q 003304 188 NEVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKPG 267 (832)
Q Consensus 188 ~~~~~~~~~iq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDv~~~~F~~~~ 267 (832)
.....+.+++|++++++++.+...++...+++||.........+++|.|+|.||++|+|+++++++||+|+++++||++.
T Consensus 172 ~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~ 251 (876)
T KOG1041|consen 172 RGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGT 251 (876)
T ss_pred ccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCc
Confidence 87777899999999999999887778889999998633333458999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCCC-CCcccH-HHHHhhhcCcEEEeecc--CceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeH
Q 003304 268 PVIDFLIANQNVRE-PRFIDW-TKAKKMLRNLRVKPRHR--NMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITV 343 (832)
Q Consensus 268 ~l~d~l~~~~~~~~-~~~~~~-~~i~~~Lkgl~V~~~~~--~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV 343 (832)
+|.+++.+...... +...++ ..++++|+||+|.++|+ +|.|+|.+++..++.+++|++++.+ +.++||
T Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~--------~~~~tV 323 (876)
T KOG1041|consen 252 PVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKK--------GREITV 323 (876)
T ss_pred chHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCC--------ceEEeH
Confidence 99999988665432 111122 23899999999999994 4889999999999999999976532 369999
Q ss_pred HHHHHHhcCCccccCCCCcEEecCCCCCcccccccceEEcCCccccc-cCCHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 003304 344 YDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTK-ALSSMQRASLVEKSRQKPQDRMRTLTDALRSY 422 (832)
Q Consensus 344 ~eYf~~~Y~i~L~~~p~lP~v~vg~~~k~~~lP~Elc~i~~~Q~~~~-~l~~~q~~~mik~~~~~P~~R~~~i~~~~~~l 422 (832)
+|||+++||++|+| |+||||++|+.++..|||||||.|++||++.+ +|++.|+++|++.++..|++|.+.|.++++..
T Consensus 324 ~~Yf~~ky~~~Lky-p~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~ 402 (876)
T KOG1041|consen 324 ADYFLEKYNITLKY-PDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSS 402 (876)
T ss_pred HHHHHHhcCccccC-CCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999999998 99999999999999999999999999999998
Q ss_pred cCCCcccccceeeEEcccceeeeeEEecCCeeeeCCc-cccCCCCCccccCCceeecccccceEEEEEeCCCccH--HHH
Q 003304 423 SYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKS-EDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSARCDT--SHI 499 (832)
Q Consensus 423 ~~~~~~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~-~~~~~~~g~W~~~~~~f~~p~~l~~W~vv~~~~~~~~--~~f 499 (832)
++..+++|++|||.|.++|+.|+||+||||.|.|+++ ....+..|.|++++++|+.|+.+..|+|++|....+. +.|
T Consensus 403 ~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~~~f 482 (876)
T KOG1041|consen 403 LKLSNPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQKQF 482 (876)
T ss_pred ccccchhHHhcCeEEecccccccccccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEEEecccccccHHHH
Confidence 8877999999999999999999999999999999987 3456788999999999999999999999999876533 689
Q ss_pred HHHHHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhCC--CCCeEEEEEccCCCCCcchHHHHHHhhcc
Q 003304 500 SRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLP--GPPQFILCVLPERKNSDIYGPWKKKSLSD 577 (832)
Q Consensus 500 ~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~ 577 (832)
++.|.+.|+..||.|..|. ... ..+.+++..+..+....+ ..+++++||+++ +..++|..+|++++..
T Consensus 483 ~~~L~~~c~~~Gm~i~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~-k~~~vy~~lK~~e~t~ 552 (876)
T KOG1041|consen 483 VDELIKICKDKGMEIKRPR--KWA-------PTEESLEDMITEKSSMEKAAAGVQLVFIILPE-KNPDVHDELKYIEETV 552 (876)
T ss_pred HHHHHHHHHHcCccccccc--ccC-------cccchhHHHHHHHHhhhccCCCceEEEEEECC-CCcchhHHHHHHHHHh
Confidence 9999999999999997532 111 112456666666655442 458999999998 7789999999999999
Q ss_pred cCceeeeeccc---cCChhHHHHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCC--CCeEEEE
Q 003304 578 FGIATQCISPT---KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSD--IPSVAAV 652 (832)
Q Consensus 578 ~gI~TQcv~~~---~~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~--~pSi~av 652 (832)
.||+|||++.. +..+||++||+||||+||||+|+.+..+.....| ....+|||||+||+||+++... .||||||
T Consensus 553 ~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagv 631 (876)
T KOG1041|consen 553 GGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGV 631 (876)
T ss_pred cCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEE
Confidence 99999999975 4569999999999999999999988765433333 4568999999999999988655 5999999
Q ss_pred EEeecCCccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCCCchhHHHHHHHH
Q 003304 653 VGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIE 732 (832)
Q Consensus 653 VaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~E 732 (832)
|+|+|| +.++|.+.+++|.+++|.|+++ ++|+.++|..|++.+ +.+|+||||||||||||||.+|+++|
T Consensus 632 v~s~~~-~~~~y~g~~~~Q~~r~e~i~~~---------~~~~~~~l~~f~~~t-~~~P~~IIiyRdGvSEgqf~~vl~~E 700 (876)
T KOG1041|consen 632 VYNLDW-HPQKFAGFVRFQKSRQEVIQDL---------GEMIRELLRSFRKST-RKLPDRIVIYRDGVSEGQFSMVLEEE 700 (876)
T ss_pred Eecccc-cchhhcceEEEecCChhhhcch---------HHHHHHHHHHHHHhc-cCCCceEEEEecCCccchHHHHHHHH
Confidence 999998 8899999999999999999883 479999999998764 56999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecCCCC-------CCCCCceeeecccccCCcceEEEeeecCCccccCC
Q 003304 733 LEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGP-------ENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRP 805 (832)
Q Consensus 733 v~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~~-------~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarP 805 (832)
+.+|++||..+.++|+|+||||||+||||||||+.+.. .|+|||||||+.||||.++|||||||+++||||||
T Consensus 701 ~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp 780 (876)
T KOG1041|consen 701 LRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSKDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKP 780 (876)
T ss_pred HHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCCCccCCccCCCCCCEecccccCCCcceEEEeccCcccccccC
Confidence 99999999999999999999999999999999987653 59999999999999999999999999999999999
Q ss_pred CeEEEEecCCCCChHHHHHHHHhcccC
Q 003304 806 AHYHVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 806 t~Y~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
|||+|||||+++++|+||+|||+|||+
T Consensus 781 ~~Y~VL~dd~~~~~d~lq~lt~~Lc~~ 807 (876)
T KOG1041|consen 781 THYTVLYDDIGFSKDELQKLTYALCFT 807 (876)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999996
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.8e-123 Score=1003.23 Aligned_cols=685 Identities=26% Similarity=0.438 Sum_probs=596.7
Q ss_pred CCCCCCCEEEEEEEEEEEEeccCCeEEEEEEEEeecCCcccccCchhhHHHHHHHHHHhhhhhcCCceEEeCCcceeecC
Q 003304 40 GVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGKRFAYDGEKSLYTVG 119 (832)
Q Consensus 40 ~~Gt~G~~i~l~tN~f~i~~~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~~~~~~~~~~yDG~~~lyS~~ 119 (832)
.-|+.|.+|+|.||||++.. .+++.||||||++ .|.++.+++++.++..+ +++-|..++|||. +||.+.
T Consensus 87 KtGssG~pv~l~tN~f~l~t-~p~w~iyqYhVef----~P~ves~rlR~~~L~~h-----~~lig~~~~FDG~-iLfl~~ 155 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMT-RPDWSIYQYHVEF----EPDVESRRLREALLYNH-----TDLIGKGYAFDGT-ILFLKE 155 (845)
T ss_pred ccCCCCceEEEEeceeeecc-CCCcEEEEEEEee----ccccccHHHHHHHHHHh-----Hhhhccceeecce-eehhhH
Confidence 35999999999999999874 5799999999999 56788888877777643 4455778999998 999999
Q ss_pred CCCCCceEEEEEeccchhcccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEecccChHHHHHHHcCCCCCchhHHHHH
Q 003304 120 PLPQNKFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDNTQDALRV 199 (832)
Q Consensus 120 ~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~l~~l~~~l~g~~~~~~~~~iq~ 199 (832)
+++++..+. ... .+.+..++|+|++++++... ..++||+
T Consensus 156 k~eq~~tel----~~k------------------------s~~ge~i~I~ik~~~~~~~t-------------~p~~iqv 194 (845)
T KOG1042|consen 156 KFEQKQTEL----VSK------------------------SRDGELIKITIKLTNELPST-------------DPQCIQV 194 (845)
T ss_pred HHhhhhhee----ecc------------------------cCCCceEEEEEEEeccccCC-------------ChhHHHH
Confidence 998764221 110 23577899999999998762 4589999
Q ss_pred HHHHHhccccccCceecccccccCCCCCeeecCCCEEeeecceEEEEeeCCeeeEeeeeeeeeeeccccHHHHHHHhcCC
Q 003304 200 LDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKPGPVIDFLIANQNV 279 (832)
Q Consensus 200 lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDv~~~~F~~~~~l~d~l~~~~~~ 279 (832)
+|+|+|+.+...++.++||+||++..+..++ ...+++|+||.+|||..+..++|+.|++|++ .+..+|.|+|.+..+
T Consensus 195 ~NlI~RR~~k~L~L~qigRnyynp~~~i~ip-~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~~~- 271 (845)
T KOG1042|consen 195 FNLILRRSMKGLNLTQIGRNYYDPRAKIEIP-EFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSCQH- 271 (845)
T ss_pred HHHHHHHHHhhccHHHhhhccCCCCcccccc-cccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHHhh-
Confidence 9999999998888899999999986553222 4689999999999999999999999999998 799999999987653
Q ss_pred CCCCcccHHHHHhhhcCcEEEeeccCceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeHHHHHHHhcCCccccCC
Q 003304 280 REPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYSA 359 (832)
Q Consensus 280 ~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV~eYf~~~Y~i~L~~~p 359 (832)
++.. ..+++++.+-|+.|.|.||||+|+|+++++...+.++|..++ .+||+.|||+++|||+|++ -
T Consensus 272 -~~~~-~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~d-----------geIs~veYyk~qYni~I~d-l 337 (845)
T KOG1042|consen 272 -NTQR-FQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDD-----------GEISFVEYYKKQYNIEITD-L 337 (845)
T ss_pred -CHHH-HHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecC-----------ceeeHhHHHHHhcCeEEee-C
Confidence 2221 456789999999999999999999999999999999997653 4999999999999999999 9
Q ss_pred CCcEEecCC--------CCCcccccccceEEcCCccccccCCHHHHH------HHHHHhcCCHHHHHHHHHHHHHhccCC
Q 003304 360 YLPCLDVGK--------PKRPNYLPLELCSLVSLQRYTKALSSMQRA------SLVEKSRQKPQDRMRTLTDALRSYSYD 425 (832)
Q Consensus 360 ~lP~v~vg~--------~~k~~~lP~Elc~i~~~Q~~~~~l~~~q~~------~mik~~~~~P~~R~~~i~~~~~~l~~~ 425 (832)
+||++.... ..+.+++.||||++++ |+|++++ +|.+++++.|++|.+.+..++..+..+
T Consensus 338 ~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TG-------Ltd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n 410 (845)
T KOG1042|consen 338 NQPLLISEPKDKRPKGEPPQLAMLIPELCFLTG-------LTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKN 410 (845)
T ss_pred CcceEeccCcccCCCCCCccceeeehhhhhccC-------CcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 999997632 2235799999999996 7888876 578899999999999999988887543
Q ss_pred --CcccccceeeEEcccceeeeeEEecCCeeeeCCccc-cCCCCCccc--cCCceeecccccceEEEEEeCCCc-cHHHH
Q 003304 426 --EDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSED-CIPRNGRWN--FNNKRFLEATRIDRWIVVNFSARC-DTSHI 499 (832)
Q Consensus 426 --~~~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~~~-~~~~~g~W~--~~~~~f~~p~~l~~W~vv~~~~~~-~~~~f 499 (832)
..+.|+.|||+++.+.++++||||++.+|.+++++. ..++..+|. ++.-.++....+++|++++.++.. .++.|
T Consensus 411 ~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~~a~~f 490 (845)
T KOG1042|consen 411 PNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNSEAQEF 490 (845)
T ss_pred hHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecCccHHHHHHH
Confidence 346799999999999999999999999999998653 335568997 677788888899999999887654 69999
Q ss_pred HHHHHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccC
Q 003304 500 SRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFG 579 (832)
Q Consensus 500 ~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~g 579 (832)
++.|.+.+..+||+|.+|..+.+.+ ++.+++++.|.+....++++|+||+|+ .+.+.|+.|||++|++.+
T Consensus 491 i~~l~r~a~~mgm~i~~P~~v~i~d---------dr~~tYvraiqq~v~~D~qmvvcil~~-~nk~~Y~sIKK~~cvd~p 560 (845)
T KOG1042|consen 491 INMLRRVASSMGMQIREPICVEIKD---------DRPGTYVRAIQQVVGADIQMVVCILPS-DNKTRYDSIKKYLCVDCP 560 (845)
T ss_pred HHHHHHhccccceecCCceEEEeCC---------CChHHHHHHHHHhccCCceEEEEEecC-CchhhHHHHHhheeccCC
Confidence 9999999999999999999876643 456778888988887889999999999 788999999999999999
Q ss_pred ceeeeeccccCCh-h----HHHHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCCCCeEEEEEE
Q 003304 580 IATQCISPTKIND-Q----YLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVG 654 (832)
Q Consensus 580 I~TQcv~~~~~~~-q----~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~~pSi~avVa 654 (832)
||||||..++++. + ..++|++||||||||..|.++ ||+ +.+|+||+||+|.+.. ...|++|+||
T Consensus 561 vPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsvga~VA 629 (845)
T KOG1042|consen 561 VPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSVGAFVA 629 (845)
T ss_pred CccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceEEEEEE
Confidence 9999999976532 2 468999999999999999884 676 7899999999998753 4579999999
Q ss_pred eecCCccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCCCchhHHHHHHHHHH
Q 003304 655 SQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELE 734 (832)
Q Consensus 655 S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~ 734 (832)
|+|. .+++|+|.+..|...+|+.+.|. -++..+|++||+.+ ..||+|||+||||||+||++++.++||+
T Consensus 630 s~n~-~~tr~fS~v~~~~~~qel~d~L~---------~~~~~ALr~y~~~n-~~LPsRIi~YRDGVgDGQLk~l~n~EV~ 698 (845)
T KOG1042|consen 630 SMNN-DFTRWFSRVIEQENGQELADNLK---------VFLAKALRQYYEVN-RTLPSRIIVYRDGVGDGQLKTLVNYEVP 698 (845)
T ss_pred eecc-chhhhhhheecccCHHHHHHHHH---------HHHHHHHHHHHHhc-ccCCceEEEEecCCCCcccceeeeeccc
Confidence 9994 89999999999999999999875 48999999998875 5999999999999999999999999999
Q ss_pred ----HHHHHHHHhCCCCCCcEEEEEEeeccceeeecCCCC--CCCCCceeeecccccCCcceEEEeeecCCccccCCCeE
Q 003304 735 ----QIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGP--ENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHY 808 (832)
Q Consensus 735 ----~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~~--~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y 808 (832)
++.+.+++++.+++|+++||||+||.++|||..... .||+||||||+.||.|.++||||+||++.|||..||||
T Consensus 699 ~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsY 778 (845)
T KOG1042|consen 699 LVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSY 778 (845)
T ss_pred hHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCccccCCCCCceecceecccceeeeEeehhhhhcCCcCCceE
Confidence 777778888888999999999999999999987643 79999999999999999999999999999999999999
Q ss_pred EEEecCCCCChHHHHHHHHhcccC
Q 003304 809 HVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 809 ~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
+||||++++++|.+|+|||.|||+
T Consensus 779 nvi~d~~gL~PDkmQrLtfKlCHl 802 (845)
T KOG1042|consen 779 NVIYDDMGLSPDKMQRLTFKLCHL 802 (845)
T ss_pred EEEecCCCCCHHHHHHHHHHHhhe
Confidence 999999999999999999999996
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=5.3e-89 Score=769.85 Aligned_cols=379 Identities=48% Similarity=0.801 Sum_probs=338.5
Q ss_pred ccccceeeEEcccceeeeeEEecCCeeeeCCc-cccCCCCCccccCCceeecccccceEEEEEeCCCc-------cHHHH
Q 003304 428 PVLAACGISIGKQLTQVDGRILEIPKLKVGKS-EDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSARC-------DTSHI 499 (832)
Q Consensus 428 ~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~-~~~~~~~g~W~~~~~~f~~p~~l~~W~vv~~~~~~-------~~~~f 499 (832)
++|++|||+|+.+|++|+||+|+||+|.|+++ ....+.+|+|++++++|++++.+++|+|+++.... +++.|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F 80 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNF 80 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHH
Confidence 46899999999999999999999999999954 34567899999999999999999999999987531 58899
Q ss_pred HHHHHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccC
Q 003304 500 SRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFG 579 (832)
Q Consensus 500 ~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~g 579 (832)
++.|.+.|+.+||.+. . .+. ..++.++.+++.+++.....++|+|||+|+ +++++|+.||++||.+.|
T Consensus 81 ~~~l~~~~~~~g~~~~-~-~~~---------~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 81 VDQLVKTVIGAGINIT-T-AIA---------SVEGRVEELFAKLKQAKGEGPQLVLVILPK-KDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHhcCCccc-c-ccc---------ccchhHHHHHHHHHhhccCCCCEEEEEEcC-CCcchHHHHHHHHhhcCC
Confidence 9999999999999987 1 111 112467778888887655578999999998 668999999999999999
Q ss_pred ceeeeecccc----CChhHHHHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCC-CCCCeEEEEEE
Q 003304 580 IATQCISPTK----INDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGR-SDIPSVAAVVG 654 (832)
Q Consensus 580 I~TQcv~~~~----~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~-~~~pSi~avVa 654 (832)
|+||||..++ .++|++.||+||||+||||+||.+++.. .+++...+|||||+||+||+++. ...||+||+||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999854 4789999999999999999999997532 22345689999999999999874 45799999999
Q ss_pred eecCCccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCCCchhHHHHHHHHHH
Q 003304 655 SQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELE 734 (832)
Q Consensus 655 S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~ 734 (832)
|+|. .+++|.+.+++|++++|++++| ++|++++|..|++. +|.+|++|||||||||||||.+|+++|++
T Consensus 226 s~d~-~~~~y~~~~~~q~~~~e~i~~l---------~~~~~~~l~~~~~~-~~~~P~~IiiyRDGvsegq~~~v~~~E~~ 294 (426)
T cd04657 226 SVDW-HLAQYPASVRLQSHRQEIIDDL---------ESMVRELLRAFKKA-TGKLPERIIYYRDGVSEGQFAQVLNEELP 294 (426)
T ss_pred ecCC-cccccceEEEEeCCCcchHHHH---------HHHHHHHHHHHHHH-hCCCCceEEEEEcCcCHHHHHHHHHHHHH
Confidence 9996 8999999999999999999886 46999999998765 56899999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEEEEeeccceeeecCCC------CCCCCCceeeecccccCCcceEEEeeecCCccccCCCeE
Q 003304 735 QIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASG------PENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHY 808 (832)
Q Consensus 735 ~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~------~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y 808 (832)
+|++||.+++.+|+|+||||||+||||+|||+.+. .+||+||||||++||+|..+||||+||.++|||||||||
T Consensus 295 ~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y 374 (426)
T cd04657 295 AIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHY 374 (426)
T ss_pred HHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceE
Confidence 99999999988899999999999999999998643 479999999999999999999999999999999999999
Q ss_pred EEEecCCCCChHHHHHHHHhcccC
Q 003304 809 HVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 809 ~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
+||+||+++++|+||+|||+|||+
T Consensus 375 ~vl~d~~~~~~d~lq~lt~~lc~~ 398 (426)
T cd04657 375 HVLWDEIGFTADELQTLTYNLCYT 398 (426)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999996
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=6.2e-85 Score=744.19 Aligned_cols=407 Identities=28% Similarity=0.482 Sum_probs=360.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--ccccceeeEEcccceeeeeEEecCCeeeeCCccccCCCCCccccC--
Q 003304 397 RASLVEKSRQKPQDRMRTLTDALRSYSYDED--PVLAACGISIGKQLTQVDGRILEIPKLKVGKSEDCIPRNGRWNFN-- 472 (832)
Q Consensus 397 ~~~mik~~~~~P~~R~~~i~~~~~~l~~~~~--~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~~~~~~~~g~W~~~-- 472 (832)
.++|+++++.+|++|++.|.++++.+..+.+ ++|++|||+|++++++|+||+|+||.|.|+++....+.+|+|++.
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~w~~~~~ 82 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVYANSNADWKREIR 82 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccCCCCCCCcchhhc
Confidence 4689999999999999999999999877655 589999999999999999999999999999876555678999864
Q ss_pred CceeecccccceEEEEEeCCCc-cHHHHHHHHHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhCCCCC
Q 003304 473 NKRFLEATRIDRWIVVNFSARC-DTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPP 551 (832)
Q Consensus 473 ~~~f~~p~~l~~W~vv~~~~~~-~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (832)
+..|+.++++++|+++++..+. ++..|++.|.+.++.+||.+.+|..+.... .+.+.+++.+.+....++
T Consensus 83 ~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~---------~~~~~~~~~l~~~~~~~~ 153 (448)
T cd04658 83 NQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKD---------DRIETYIRALKDAFRSDP 153 (448)
T ss_pred CCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCC---------CCHHHHHHHHHHhhcCCC
Confidence 4578999999999999986443 699999999999999999999887654422 224556676766655678
Q ss_pred eEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccccC-----ChhHHHHHHHHHHhccCCcccccccccccCCCCccC
Q 003304 552 QFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTKI-----NDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKD 626 (832)
Q Consensus 552 ~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~-----~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~ 626 (832)
+|+|||+|+ +.+++|..||++|+.+.||+||||..+++ ..+++.||++|||+||||+||.++.. ....
T Consensus 154 ~lvvvilp~-~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~ 226 (448)
T cd04658 154 QLVVIILPG-NKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFIL 226 (448)
T ss_pred cEEEEEECC-CCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCC
Confidence 999999998 66789999999999999999999998543 34689999999999999999998642 1335
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecCCccceeeEEEEEccCCcee-eccccccccCCChHHHHHHHHHHHHHHh
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEM-IDALYKPIANGNDDGIIRELLLDFYRTS 705 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~~~~~~y~~~~~~Q~~~~E~-i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (832)
.+|||||+||+|++++ ..||+||+|||+|. ++++|++.+..|..++|+ +++| ++|++++|..|++.
T Consensus 227 ~~tmiiGidv~h~~~~--~~~Si~a~vas~~~-~~~~~~~~~~~q~~~~e~~~~~l---------~~~~~~~l~~y~~~- 293 (448)
T cd04658 227 KNTMIVGIDVYHDTIT--KKKSVVGFVASLNK-SITKWFSKYISQVRGQEEIIDSL---------GKSMKKALKAYKKE- 293 (448)
T ss_pred CCeEEEEEeeecCCCC--CCCcEEEEEEEcCC-CCceEeeEEEEeCCCceeeHHHH---------HHHHHHHHHHHHHH-
Confidence 7899999999999873 46999999999995 889999999999999998 6664 57999999998765
Q ss_pred CCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecCCCC--CCCCCceeeeccc
Q 003304 706 KQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGP--ENVPPGTVVDTRI 783 (832)
Q Consensus 706 ~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~~--~N~~pGTvVD~~I 783 (832)
+|.+|++|||||||||||||..|+++|+++|++||..+..+|+|+||||+|+||||+|||+.+.. +||+||||||++|
T Consensus 294 ~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~~~~N~~~GTvVd~~i 373 (448)
T cd04658 294 NKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEI 373 (448)
T ss_pred hCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCCCCCCCCCCcEecccc
Confidence 57999999999999999999999999999999999998888999999999999999999997654 5999999999999
Q ss_pred ccCCcceEEEeeecCCccccCCCeEEEEecCCCCChHHHHHHHHhcccC
Q 003304 784 VHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 784 t~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
|+|..+||||+||.++||||||+||+||+||+++++|+||+|||+|||+
T Consensus 374 t~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~ 422 (448)
T cd04658 374 TKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHL 422 (448)
T ss_pred cCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999996
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=5.5e-76 Score=658.52 Aligned_cols=354 Identities=28% Similarity=0.425 Sum_probs=302.4
Q ss_pred ceeeeeEEecCCeeeeCCccccCCCCCccccCCceeeccccc-ceEEEEEeCCCccHHHHHHHHHHHhhhcCcccCC-Cc
Q 003304 441 LTQVDGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATRI-DRWIVVNFSARCDTSHISRELINCGRNKGIHIER-PF 518 (832)
Q Consensus 441 ~~~v~~rvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~~p~~l-~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~-p~ 518 (832)
+++|+||+||||+|.|+++ |++++++|..|+.+ ++|+|+++... ..++|++.|.+.++++||.+.+ |.
T Consensus 2 ~~~v~grvL~~p~i~~~~~---------w~~~~~~f~~~~~~~~~W~vi~~~~~-~~~~f~~~l~~~~~~~G~~~~~~~~ 71 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK---------FLRNIGPFEKPAKITNPVAVIAFRNE-EVDDLVKRLADACRQLGMKIKEIPI 71 (393)
T ss_pred ceEEeeEecCCCceEecCC---------ccccCCeeCCCCEeCCeEEEEEcccH-HHHHHHHHHHHHHHhCCCccCCCCC
Confidence 6899999999999999864 99999999999998 99999988653 4678999999999999999988 54
Q ss_pred eeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecccc-----CChh
Q 003304 519 TLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTK-----INDQ 593 (832)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~-----~~~q 593 (832)
.......+ ...+.+...+++.. ..+++|+|||+|+ ++++.|+.||++++.+ ||+||||+..+ .+.+
T Consensus 72 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~ 142 (393)
T cd02826 72 VSWIEDLN----NSFKDLKSVFKNAI---KAGVQLVIFILKE-KKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQ 142 (393)
T ss_pred cceeeccc----ccHHHHHHHHHHHh---hcCCCEEEEEEcC-CCccHHHHHHHHHhcc-CCceEEEehhhhccccccHH
Confidence 43222110 01123444444333 3468999999998 7789999999999988 99999999753 4578
Q ss_pred HHHHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCC-CCCCCeEEEEEEeecCCccceeeEEEEEcc
Q 003304 594 YLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPG-RSDIPSVAAVVGSQSWPLISRYRAAVRTQS 672 (832)
Q Consensus 594 ~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~-~~~~pSi~avVaS~d~~~~~~y~~~~~~Q~ 672 (832)
+++||++|||+||||+||.++.. .+...+|||||+||+|++++ ....||++|+|+|+|. . +.|.+....|.
T Consensus 143 ~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~-~-~~~g~~~~~~~ 214 (393)
T cd02826 143 TLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSN-H-TFLGGFLYVQP 214 (393)
T ss_pred HHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCC-c-cccceEEEEec
Confidence 99999999999999999999642 12347899999999999875 3357999999999995 3 44445567788
Q ss_pred CCceeeccccccccCCChHHHHHHHHHHHHHHhCCC-CCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcE
Q 003304 673 SKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQR-KPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKF 751 (832)
Q Consensus 673 ~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~-~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pki 751 (832)
.++|++++| ++|++++|..|++. ++. +|++|||||||||||||+.|+++|+++|++||. +..+|+|+|
T Consensus 215 ~~~~~~~~l---------~~~~~~~L~~y~~~-~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~~~~p~i 283 (393)
T cd02826 215 SREVKLQDL---------GEVIKKCLDGFKKS-TGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEESYRPKL 283 (393)
T ss_pred CccchHHHH---------HHHHHHHHHHHHHH-cCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCCCCCCCE
Confidence 888887765 46999999998765 567 999999999999999999999999999999999 778899999
Q ss_pred EEEEEeeccceeeecCCCC---CCCCCceeeecccccCCcceEEEeeecCCccccCCCeEEEEecCCCCChHHHHHHHHh
Q 003304 752 TVIVAQKNHHTKLFQASGP---ENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHS 828 (832)
Q Consensus 752 t~Ivv~Krh~~Rff~~~~~---~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~ 828 (832)
|||+|+||||+|||+.+.. .||+||||||++||+|..+||||+||.++||||||+||+||+||+++++|+||+|||+
T Consensus 284 t~Ivv~Krh~~Rff~~~~~~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~ 363 (393)
T cd02826 284 VIIVVQKRHNTRFFPNEKNGGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYI 363 (393)
T ss_pred EEEEEeccccceeccCCCCCCCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999996542 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 003304 829 LSYV 832 (832)
Q Consensus 829 LCy~ 832 (832)
|||+
T Consensus 364 lc~~ 367 (393)
T cd02826 364 LCLT 367 (393)
T ss_pred Hhhc
Confidence 9996
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=1.8e-61 Score=526.02 Aligned_cols=264 Identities=47% Similarity=0.702 Sum_probs=232.2
Q ss_pred EEEEEccCCCCCcchHHHHHHhhcccCceeeeecccc---C--ChhHHHHHHHHHHhccCCcc-cccccccccCCCCccC
Q 003304 553 FILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTK---I--NDQYLTNVLLKINSKLGGIN-SLLALEQSSLIPLIKD 626 (832)
Q Consensus 553 ~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~---~--~~q~~~ni~lKiN~KlGG~n-~~~~~~~~~~~p~~~~ 626 (832)
+++||+|+ ++++.|+.+|++++.++||+||||..++ . ..+++.||++|||+||||.| |.++.. ...++
T Consensus 1 ~i~~ii~~-~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~--- 74 (302)
T PF02171_consen 1 LIVVIIPD-KNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL--- 74 (302)
T ss_dssp -EEEEESS-SSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---
T ss_pred CEEEEEeC-CChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---
Confidence 57899998 7789999999999999999999999753 2 36899999999999999996 444321 11111
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecCCccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhC
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSK 706 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~ 706 (832)
.++||||+||+|++++....||++|+|+|+|. ..++|.+.+..|..++|++++|. ++++++|+.|++.++
T Consensus 75 ~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~-~~~~~~~~~~~~~~~~e~~~~l~---------~~~~~~L~~~~~~~~ 144 (302)
T PF02171_consen 75 KNTMIIGIDVSHPSPGSDKNPSVVGFVASFDS-DGSKYFSSVRFQDSGQEIIDNLE---------EIIKEALKEFKKNNG 144 (302)
T ss_dssp SEEEEEEEEEEEESSTCTCSCEEEEEEEEEST-TTCEEEEEEEEECTTCCCHHHHH---------HHHHHHHHHHHHTTT
T ss_pred CceEEEEEEEEecCcccCCcceeeEEEEeccC-ccccccceeEEeccchhhhcchh---------hHHHHHHHHHHHHcC
Confidence 78999999999998765457999999999994 88999999999999999998854 699999999876654
Q ss_pred CCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecCCCC---CCCCCceeeeccc
Q 003304 707 QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGP---ENVPPGTVVDTRI 783 (832)
Q Consensus 707 ~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~~---~N~~pGTvVD~~I 783 (832)
+.+|++|||||||||||||..|+++|+++|++||.+++.+|+|+||||+|+||||+|||+.+.. .||+||||||+.|
T Consensus 145 ~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~~~~N~~~Gtvvd~~i 224 (302)
T PF02171_consen 145 KWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRDGLQNPPPGTVVDTGI 224 (302)
T ss_dssp T-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEETTTEECTTEEESSEE
T ss_pred CCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccccccCCCCCCeeeccce
Confidence 3499999999999999999999999999999999999989999999999999999999998764 5999999999999
Q ss_pred ccCCcceEEEeeecCCccccCCCeEEEEecCCCCChHHHHHHHHhcccC
Q 003304 784 VHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 784 t~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
|+|..+||||+||.++|||+||+||+|||||.+++.|+||+|||+|||+
T Consensus 225 ~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~ 273 (302)
T PF02171_consen 225 TSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHL 273 (302)
T ss_dssp EECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTG
T ss_pred eeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999995
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=8.1e-39 Score=360.69 Aligned_cols=258 Identities=21% Similarity=0.289 Sum_probs=195.8
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEccCCCC------CcchHHHHHHhhcccCceeeeeccccC-----ChhHHHHHHHHHHh
Q 003304 536 VERMFELITEKLPGPPQFILCVLPERKN------SDIYGPWKKKSLSDFGIATQCISPTKI-----NDQYLTNVLLKINS 604 (832)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~vlvIlp~~~~------~~~Y~~iK~~~~~~~gI~TQcv~~~~~-----~~q~~~ni~lKiN~ 604 (832)
+...++...+.....++++||++|+ +. .+.|..||+++ .+.||+||||..+++ ..+++.||++|||+
T Consensus 96 ~~~a~~~~~~~~~~~~~~~lvilP~-~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~a 173 (404)
T cd04659 96 IIEAVDLALSESSQGVDVVIVVLPE-DLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYA 173 (404)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeCH-HHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHH
Confidence 3334444333323468999999998 43 78999999987 679999999997543 35689999999999
Q ss_pred ccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecCCccceeeEEEEEccCCceeecccccc
Q 003304 605 KLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKP 684 (832)
Q Consensus 605 KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~ 684 (832)
|+||+||.++.. ...+|||||+||+|+..+....+++|.+ .|. ....+ ...+.+..+.+++-
T Consensus 174 KlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~v---f~~-~g~g~---~~~~~~~~~~~~~~--- 235 (404)
T cd04659 174 KLGGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQV---FDS-DGLGL---ILRGAPIEEPTEDR--- 235 (404)
T ss_pred hcCCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEE---EcC-CCCEE---EEecCccCCccccc---
Confidence 999999999632 2368999999999997642222343333 332 21111 11222333333210
Q ss_pred ccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceee
Q 003304 685 IANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKL 764 (832)
Q Consensus 685 ~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rf 764 (832)
..+.+.++++++|..|.+.++..+|+||||||||+. .++|+++|++||.+++ |+++||+|+|+||+||
T Consensus 236 -~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~ 303 (404)
T cd04659 236 -SPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRL 303 (404)
T ss_pred -CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcce
Confidence 001356799999999876644339999999999993 6899999999999874 9999999999999999
Q ss_pred ecCCCC---CCCCCceeeecccccCCcceEEEeeecCC--------ccccCCCeEEEEecCCCCChHHHHHHHHhcccC
Q 003304 765 FQASGP---ENVPPGTVVDTRIVHPRNYDFYMCAHAGM--------IGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 765 f~~~~~---~N~~pGTvVD~~It~p~~~dFyL~Sh~~~--------qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
|..+.. .||++|||||.+ .+||||++|.+. +||++|+| |++|+.+.+.|+|+++||.|||+
T Consensus 304 f~~~~~~~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~ 375 (404)
T cd04659 304 FRFGTYPNGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKL 375 (404)
T ss_pred EEecCCCCCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhc
Confidence 986543 489999999964 499999999986 99999999 88899889999999999999986
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.88 E-value=7.8e-23 Score=194.98 Aligned_cols=130 Identities=37% Similarity=0.565 Sum_probs=107.7
Q ss_pred ccHHHHHHHhcCCCCCCcccH-HHHHhhhcCcEEEeeccC--ceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeH
Q 003304 267 GPVIDFLIANQNVREPRFIDW-TKAKKMLRNLRVKPRHRN--MEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITV 343 (832)
Q Consensus 267 ~~l~d~l~~~~~~~~~~~~~~-~~i~~~Lkgl~V~~~~~~--r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV 343 (832)
++|+|++.+..+........+ .++++.|+|++|.++|++ +.|+|.+|++.++++++|+.+. |+++||
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~----------g~~itv 70 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDND----------GKEITV 70 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETT----------SEEEEH
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCC----------CceEEh
Confidence 478999998776554332222 348999999999999998 9999999999999999998762 479999
Q ss_pred HHHHHHhcCCccccCCCCcEEecCCCCC--cccccccceEEcCCccccccCCHHHHHHHHHHhcCC
Q 003304 344 YDYFTQHCRIELTYSAYLPCLDVGKPKR--PNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQK 407 (832)
Q Consensus 344 ~eYf~~~Y~i~L~~~p~lP~v~vg~~~k--~~~lP~Elc~i~~~Q~~~~~l~~~q~~~mik~~~~~ 407 (832)
+|||+++||++|+| |+||||+++...+ ++|||||||.|+|+|++.+++.+.+++.|++.++.+
T Consensus 71 ~eYf~~~Y~i~L~~-p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 71 AEYFKEKYNIRLKY-PDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HHHHHHTCT---SS-TTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred HHHHHhhhhccccc-CCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 99999999999999 9999999998777 899999999999999999999999999999998763
No 10
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.77 E-value=8.6e-19 Score=161.79 Aligned_cols=106 Identities=27% Similarity=0.305 Sum_probs=89.4
Q ss_pred cccHHHHHHHhcCCCCC----CcccHHHHHhhhcCcEEEeecc--CceEEEeecCCCCCCcccccccccCCCCCCCCCce
Q 003304 266 PGPVIDFLIANQNVREP----RFIDWTKAKKMLRNLRVKPRHR--NMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETL 339 (832)
Q Consensus 266 ~~~l~d~l~~~~~~~~~----~~~~~~~i~~~Lkgl~V~~~~~--~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~ 339 (832)
.++|+|++.+..+.++. ...++.++.++|+|++|.++|+ ++.|+|.+|++.+|+++ |...+ |.
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~----------~~ 69 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSD----------GK 69 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCC----------CC
Confidence 36899999887654322 2335678999999999999998 78999999999999988 75332 46
Q ss_pred eeeHHHHHHHhcCCccccCCCCcEEecCCC---CCcccccccceEEc
Q 003304 340 EITVYDYFTQHCRIELTYSAYLPCLDVGKP---KRPNYLPLELCSLV 383 (832)
Q Consensus 340 ~isV~eYf~~~Y~i~L~~~p~lP~v~vg~~---~k~~~lP~Elc~i~ 383 (832)
++||+|||+++||++|+| |+||||++|+. .+.+|||||||.|+
T Consensus 70 ~isv~dYf~~kY~~~l~~-p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 70 EITFADYFKERYNLTLTD-LNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred EEEHHHHHHHHcCCcccC-CCCCEEEecCcccCCCceEEchheEEeC
Confidence 899999999999999999 99999999987 67899999999985
No 11
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.77 E-value=1.3e-18 Score=160.88 Aligned_cols=107 Identities=47% Similarity=0.791 Sum_probs=91.7
Q ss_pred ccHHHHHHHhcCCCCC---CcccHHHHHhhhcCcEEEeecc---CceEEEeecCCCCCCcccccccccCCCCCCCCCcee
Q 003304 267 GPVIDFLIANQNVREP---RFIDWTKAKKMLRNLRVKPRHR---NMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLE 340 (832)
Q Consensus 267 ~~l~d~l~~~~~~~~~---~~~~~~~i~~~Lkgl~V~~~~~---~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~ 340 (832)
++|+|++.++.+.... ...++.+++++|+|++|.++|. +|.|+|.||+..++.+.+|..++. +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~---------~~~ 72 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDG---------EKE 72 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCC---------CcE
Confidence 6899999987655432 2336678999999999999997 689999999999998899976531 148
Q ss_pred eeHHHHHHHhcCCccccCCCCcEEecCCCCCcccccccceEEc
Q 003304 341 ITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLV 383 (832)
Q Consensus 341 isV~eYf~~~Y~i~L~~~p~lP~v~vg~~~k~~~lP~Elc~i~ 383 (832)
+||+|||+++||++|+| |+||||++|+..+++|+|||||.|+
T Consensus 73 isV~dYf~~~y~~~l~~-p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 73 ISVADYFKEKYNIRLKY-PNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred EEHHHHHHHHcCCcccC-CCCCEEEeCCCCCCcEecceeEEeC
Confidence 99999999999999999 9999999999888999999999984
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.75 E-value=2.3e-18 Score=158.25 Aligned_cols=106 Identities=24% Similarity=0.229 Sum_probs=87.6
Q ss_pred ccHHHHHHHhcCCCCCCcccHHHHHhhhcCcEEEeeccCceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeHHHH
Q 003304 267 GPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDY 346 (832)
Q Consensus 267 ~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV~eY 346 (832)
.+++|++.+..+... ...++.++.+.|+|+.|.+.|+++.|+|.+|++.+++.++|+.++ +.++||+||
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~----------~~~~S~~~Y 70 (117)
T cd02845 2 TTVLDRMHKLYRQET-DERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSD----------GTEITFVEY 70 (117)
T ss_pred eeHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCC----------CCeeeHHHH
Confidence 467788776443221 112567899999999999999999999999999999999996443 248999999
Q ss_pred HHHhcCCccccCCCCcEEecCCCC--------CcccccccceEEcC
Q 003304 347 FTQHCRIELTYSAYLPCLDVGKPK--------RPNYLPLELCSLVS 384 (832)
Q Consensus 347 f~~~Y~i~L~~~p~lP~v~vg~~~--------k~~~lP~Elc~i~~ 384 (832)
|+++||+.|+| |+|||+.++.++ +++|||||||.++|
T Consensus 71 y~~kY~i~I~~-~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltg 115 (117)
T cd02845 71 YKKQYNIEITD-LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTG 115 (117)
T ss_pred HHHHcCCcccc-CCCCcEEeeccccccCCCCCcEEEEchHHhhhcC
Confidence 99999999999 999999997633 47999999999997
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.49 E-value=2.1e-14 Score=111.36 Aligned_cols=51 Identities=55% Similarity=0.868 Sum_probs=41.5
Q ss_pred ecccccccCCCCCeeecCCCEEeeecceEEEEeeCCeeeEeeeeeeeeeecc
Q 003304 215 LVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKP 266 (832)
Q Consensus 215 ~~g~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDv~~~~F~~~ 266 (832)
.+||+||+++... .+|++|+|+|+|||+||||+.++|.||+|+++++||++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 5799999876554 68999999999999999999999999999999999975
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.42 E-value=2.1e-13 Score=128.15 Aligned_cols=84 Identities=26% Similarity=0.288 Sum_probs=70.0
Q ss_pred HHhhhcCcEEEeeccCceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeHHHHHHHhcCCccccCCCCcEEecCC-
Q 003304 290 AKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGK- 368 (832)
Q Consensus 290 i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV~eYf~~~Y~i~L~~~p~lP~v~vg~- 368 (832)
..+.|+|+.|.+.|++|.|+|.+++ ..+++++|+.++ | +..+||+|||+++|||+|+| |+|||+++..
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~----~-----~~~~Sy~eYy~~kY~i~L~~-~~QPLL~~~~~ 95 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKE----G-----LGYATYAEYFKEKYGIVLNH-PNQPLLKGKQI 95 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCC----C-----CceeeHHHHHHHHhCceecc-CCcceEEEecc
Confidence 4667999999999999999999999 899999996543 1 14699999999999999999 9999997541
Q ss_pred -------------------CC---CcccccccceEEcC
Q 003304 369 -------------------PK---RPNYLPLELCSLVS 384 (832)
Q Consensus 369 -------------------~~---k~~~lP~Elc~i~~ 384 (832)
.. ..++||||||.+.+
T Consensus 96 ~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 96 FNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred cccceecccccccccccccccccceEEEeChHHhcccc
Confidence 01 14699999999864
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.58 E-value=8.1e-08 Score=87.11 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=57.3
Q ss_pred HhhhcCcEEEeeccC----ceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeHHHHHHHhcCCccccCCCCcEEec
Q 003304 291 KKMLRNLRVKPRHRN----MEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYSAYLPCLDV 366 (832)
Q Consensus 291 ~~~Lkgl~V~~~~~~----r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV~eYf~~~Y~i~L~~~p~lP~v~v 366 (832)
.+.+.|..|.+.|+| ++|+|.+|.+...+.++|+.+ ..+|++|||+++|||.|++ ++||+|.|
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~------------~~~Ty~eYyk~KY~I~I~~-~~QPLL~v 104 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP------------EYETFEEYYKKKYKLDIQN-LNQPLLDV 104 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC------------CCccHHHHHHHhcCeEecc-CCCCcEee
Confidence 346899999999998 899999999888889999532 2799999999999999999 99999998
Q ss_pred CC
Q 003304 367 GK 368 (832)
Q Consensus 367 g~ 368 (832)
..
T Consensus 105 ~~ 106 (122)
T cd02843 105 DH 106 (122)
T ss_pred cC
Confidence 53
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.13 Score=58.46 Aligned_cols=317 Identities=18% Similarity=0.149 Sum_probs=153.4
Q ss_pred EecCCeeeeCC-ccccCCCCCccccCCceeecccccceEEEEEe---CCCc--cHHHHHHHHHHHhhhcC-cc--cCCCc
Q 003304 448 ILEIPKLKVGK-SEDCIPRNGRWNFNNKRFLEATRIDRWIVVNF---SARC--DTSHISRELINCGRNKG-IH--IERPF 518 (832)
Q Consensus 448 vL~~P~i~~g~-~~~~~~~~g~W~~~~~~f~~p~~l~~W~vv~~---~~~~--~~~~f~~~L~~~~~~~G-~~--i~~p~ 518 (832)
.-.+|.|..++ |.+......-|++. ....|.....|.-+.. +..- .+..+.+.+....+..+ +. +.-+.
T Consensus 306 ~ek~pdiv~g~~gktti~n~nl~~yl--py~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv~~~fkn~n~i~~k~eg~~ 383 (685)
T COG1431 306 PEKGPDIVIGTEGKTTIDNVNLFCYL--PYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVEGLT 383 (685)
T ss_pred cccCCceEecccceeeEehhhhhhhh--cccccccceecceeeEEEehhhhhhHHHHHHHHHHHHHHhccchhhhcccce
Confidence 33455666554 33222222334432 2345544556654432 2211 47778888888887765 32 22222
Q ss_pred eeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecccc---CChhHH
Q 003304 519 TLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTK---INDQYL 595 (832)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~---~~~q~~ 595 (832)
..... .+....+.+-.++.++ ....+...-+- ++...|+.+|+ .+.-|+||.+.-.+ .-.-++
T Consensus 384 l~~a~----~r~~~kddl~~iIkei------d~ee~~k~e~y-kdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~ 449 (685)
T COG1431 384 LHVAG----KRPKMKDDLTKIIKEI------DVEELKKQEMY-KDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTK 449 (685)
T ss_pred eeecc----cchhhhccchhhhhhh------hhhhhcccccc-ccchHHHHHHh---hcccCcceeeeccccCCcchhhh
Confidence 21110 0100111222223322 01122222223 45677999998 45669999998633 234578
Q ss_pred HHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCC
Q 003304 596 TNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSK 674 (832)
Q Consensus 596 ~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~ 674 (832)
.|++.|+-||-+|+++.+-.. .- .-+-|+|+||+...-+ ...+-|++.-.++ ....+|......- .+
T Consensus 450 tnla~~~~~ktlgqpY~~r~~---~g-----pvDaivGlDvsr~~~g---n~tV~gct~~f~seg~l~eyy~t~tpa-~G 517 (685)
T COG1431 450 TNLASKRYLKTLGQPYLKRNG---LG-----PVDAIVGLDVSRVSEG---NWTVEGCTSCFVSEGGLEEYYHTVTPA-LG 517 (685)
T ss_pred hHHHHHHHHHhcCCceeeecc---CC-----CccceeeeeeeEEeeC---CeEEeeeeEEEeccCceEEeeecccCC-cc
Confidence 999999999999999987421 11 2257999999987632 2233342222221 1233443221100 00
Q ss_pred ceeeccccccccCCChHHHHHHHHHHHHHHhCC-CCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEE
Q 003304 675 VEMIDALYKPIANGNDDGIIRELLLDFYRTSKQ-RKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTV 753 (832)
Q Consensus 675 ~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~-~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~ 753 (832)
|... -+-+-|+. ..+.+ ..-.+|++.|||- +...|++++++.=..++ ..+++
T Consensus 518 -Erl~-------------~~g~yle~--~~~~gfe~~n~iV~lRDG~-------l~~~E~aavkeyg~elg----sn~ev 570 (685)
T COG1431 518 -ERLE-------------TSGRYLEK--MNWRGFESRNLIVTLRDGK-------LVAGEIAAVKEYGGELG----SNPEV 570 (685)
T ss_pred -chhh-------------hHHHHHHH--HHhhhhhccCeeEEEecCc-------cchHHHHHHHHHhhhcC----CChhh
Confidence 1110 01111111 01111 3446799999996 55667776666555443 34455
Q ss_pred EEEeeccceeeecCCCCCCCCCceeeecccccCCcceEEEe--eecCCccccCCCeEEEEecCCCCChHHHHHHHHhcc
Q 003304 754 IVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMC--AHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLS 830 (832)
Q Consensus 754 Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~It~p~~~dFyL~--Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~LC 830 (832)
+.+-| .+-+||......= |..+-.++..++. .| +.....||-+|..- .+.-+.-..|+-.|.|.|.
T Consensus 571 ~~i~k-nNp~vf~~e~~i~---g~f~~~~~s~~h~----~~~~ynpv~~gT~~pi~~---r~~~g~l~~e~i~lv~dLT 638 (685)
T COG1431 571 NRILK-NNPWVFAIEGEIW---GAFVRLDGSTVHL----CCSPYNPVRRGTPRPIAL---RRRDGKLDGELIGLVHDLT 638 (685)
T ss_pred heecc-cCCeEEEecceee---eEEEecCCccccc----ccCCCCceecCCCccccc---ccccCccchhhHHHHHHhh
Confidence 55544 4555887653200 3333222211110 00 12244688887653 3333334444444777765
No 17
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=89.79 E-value=2.5 Score=41.06 Aligned_cols=108 Identities=25% Similarity=0.327 Sum_probs=53.5
Q ss_pred CCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHH
Q 003304 626 DTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRT 704 (832)
Q Consensus 626 ~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~ 704 (832)
+.|.-|-++|+||-.. .-.|+++|.-.|. +.-..|. ...+... +-.+|. .+|.|.|..+|+.
T Consensus 9 ~~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR-~f~i~~~--~~~dDy----------~~M~Evl~RR~~~ 71 (155)
T PF08459_consen 9 KLPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYR-RFNIKTV--DGGDDY----------AAMREVLTRRFKR 71 (155)
T ss_dssp S--SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-E-EEEEE----STT-HH----------HHHHHHHHHHHCC
T ss_pred CCCCEEEEEECcccCC----cccEEEEEEEECCccChhhCc-eEecCCC--CCCcHH----------HHHHHHHHHHHhc
Confidence 3567899999999754 2367888776664 2222333 2223211 111343 4788888877653
Q ss_pred h---CCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecccee
Q 003304 705 S---KQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTK 763 (832)
Q Consensus 705 ~---~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~R 763 (832)
. ...+|+-|+| || +.||+. +.++++++++-. .++.=++=.+.|.++
T Consensus 72 ~~~~~~~lPDLilI--DG-G~gQl~--------aa~~~l~~lgl~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 72 LKEEKEPLPDLILI--DG-GKGQLN--------AAKEVLKELGLN--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp CHHHT----SEEEE--SS-SHHHHH--------HHHHHHHCTT------EEEEESSSSE---
T ss_pred ccccCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcCCC--eEEEEEEeccccccc
Confidence 2 1268998888 87 456654 456777766433 333333334446666
No 18
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=81.50 E-value=10 Score=44.93 Aligned_cols=110 Identities=29% Similarity=0.382 Sum_probs=65.1
Q ss_pred eEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCC
Q 003304 629 TMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQ 707 (832)
Q Consensus 629 tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~ 707 (832)
.-|-++|+||-.+. -.|+++|.-.|. |.-..|.- ..+.. .+-.+|. .+|+|.|...|.....
T Consensus 382 ~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YR~-f~i~~--~~~~dDy----------a~m~Evl~RR~~r~~~ 444 (574)
T TIGR00194 382 KRIEIFDISHIDGS----QTVGSMVVFEDGKPLKASYRR-YNINS--ITGGDDY----------AAMREVLRRRYSSIQK 444 (574)
T ss_pred CEEEEEECCccCCC----cceEEEEEEeCCccChhhCCe-eecCC--CCCCCHH----------HHHHHHHHHHHhhhcc
Confidence 67889999997642 368888877764 22223321 22211 1112443 4778887766654211
Q ss_pred ----CCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEee--ccceeeecCC
Q 003304 708 ----RKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQK--NHHTKLFQAS 768 (832)
Q Consensus 708 ----~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~K--rh~~Rff~~~ 768 (832)
.+|+-||| || +.||+.. ..+++.+++-. ..+.+|-..| ||.+++|..+
T Consensus 445 ~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg~~--~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 445 KNNLPLPDLILI--DG-GKGQLNA--------ALEVLKSLGVV--NKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred ccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCC--CCCcEEEEEecCCCceEEEeCC
Confidence 48998888 77 4677654 45666666431 1355666666 7778888644
No 19
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=76.05 E-value=22 Score=42.65 Aligned_cols=111 Identities=22% Similarity=0.328 Sum_probs=66.4
Q ss_pred CCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHH
Q 003304 626 DTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRT 704 (832)
Q Consensus 626 ~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~ 704 (832)
..|..|-++|+||-.+. -.|+++|.-.|. |.-..|. ...+.... .-.+|. .+|.|.|...|..
T Consensus 452 ~~p~rIE~fDiSh~~G~----~~VasmVvf~~G~p~k~~YR-~f~ik~~~-~~~DD~----------asM~Evl~RR~~r 515 (691)
T PRK14672 452 RIPTLIEGFDISHLGGK----YTVASLICFKNGAPDTKNYR-LFNLRAHD-TRIDDF----------ASMREAIARRYTH 515 (691)
T ss_pred CCCCeEEEEECCccCCc----CceEEEEEEECCccChhhCC-eeeccCCC-CCCchH----------HHHHHHHHHHhhc
Confidence 35789999999997642 368888887764 2222332 12222110 112443 4788888776654
Q ss_pred hC--CCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecC
Q 003304 705 SK--QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQA 767 (832)
Q Consensus 705 ~~--~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~ 767 (832)
.. ..+|+-||| || +.||+. +.++++.+++- .+.+|-..||.-.-|+|.
T Consensus 516 ~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elgl----~i~vigLaKr~e~i~~~~ 565 (691)
T PRK14672 516 TPEGYTLPDLILV--DG-GIGHVS--------AAQHVLDALGL----SIPLVGLAKRAEELFIPN 565 (691)
T ss_pred ccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEecccEEEeCC
Confidence 21 258998888 76 456654 45667777653 366787888765544453
No 20
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=73.42 E-value=32 Score=40.34 Aligned_cols=108 Identities=28% Similarity=0.396 Sum_probs=63.5
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHh
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (832)
.|.-|-|+|+||-.+. -.|+++|.-.|. |.-..|. ...+.. .+-.+|. .+|.|.|...|...
T Consensus 365 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~p~k~~YR-~f~Ik~--~~~~dDy----------~~m~Evl~RR~~r~ 427 (519)
T PRK12306 365 PPNVIECFDISHLSGT----STVGSMVQFRNGKPDKKNYR-RFKIKT--VEGIDDF----------ASIAEVVRRRYSRL 427 (519)
T ss_pred CCCeEEEEECCccCCC----CceEEEEEEeCCccChhhcC-eeecCC--CCCCCHH----------HHHHHHHHHHHhhc
Confidence 3566889999997542 368888877764 2222332 222221 1112343 47778777666542
Q ss_pred CC---CCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeec
Q 003304 706 KQ---RKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQ 766 (832)
Q Consensus 706 ~~---~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~ 766 (832)
.. .+|+-||| || +-||+.. ..+++.+++- .+.+|-..|+.-.-|+|
T Consensus 428 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~~l~elg~----~i~viglaK~~e~i~~p 476 (519)
T PRK12306 428 LEENSELPDLIVI--DG-GKGQLSS--------AFKELRKLGL----KIPLISIAKREEEIYVP 476 (519)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEcCceEEEeC
Confidence 11 48998888 77 4577654 4567776643 36778788876443344
No 21
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=70.44 E-value=41 Score=39.96 Aligned_cols=113 Identities=26% Similarity=0.322 Sum_probs=65.4
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHh
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (832)
.|.-|-++|+||-.+. -.|+++|.-.|. |.-..|. ...+........+|. .+|.|.|...|...
T Consensus 357 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YR-kf~ik~~~~~~~DD~----------a~M~Evl~RR~~r~ 421 (574)
T PRK14670 357 LPKTIEGFDIAHLNGQ----KTVASLVTFKMGKPFKDGYR-VYKINSLLKGEIDDF----------KAIKEVISRRYSKL 421 (574)
T ss_pred CCCeEEEEECCccCCC----CceEEEEEEECCccChhhCC-eeeccCCCCCCCCHH----------HHHHHHHHHHHhhc
Confidence 4578899999997642 368888877764 2212232 222221100002443 47788877766542
Q ss_pred C---CCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecC
Q 003304 706 K---QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQA 767 (832)
Q Consensus 706 ~---~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~ 767 (832)
. +.+|+-||| || +.||+.. ..+++.+++- ..++.+|-..|+--+=|+|.
T Consensus 422 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg~--~~~i~v~gLaK~~e~i~~~~ 473 (574)
T PRK14670 422 INEQLELPNLILI--DG-GKGQLNA--------AYSILKGLKI--ENKVKVCALAKKEETIFLPN 473 (574)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC--CCCceEEEEecCCeEEEeCC
Confidence 1 258998888 87 4566544 4567766643 22377888888764444453
No 22
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=66.91 E-value=42 Score=39.84 Aligned_cols=108 Identities=26% Similarity=0.306 Sum_probs=64.5
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHh
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (832)
.|.-|-++|+||-.+. -.|+++|.-.|. |.-..|. ...+... +-.+|. .+|.|.|...|...
T Consensus 360 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dD~----------~~m~Evl~RR~~r~ 422 (567)
T PRK14667 360 LPERIEGFDISHFYGE----FTVGSCVVWEDGSMNKKEYR-RYKIKTV--DGIDDY----------ASLREVLTRRARRY 422 (567)
T ss_pred CCCeEEEEECcccCCC----cceEEEEEEECCccChhhCC-eeecCCC--CCCCHH----------HHHHHHHHHHhhhc
Confidence 4567889999997542 378888887774 2222332 2222211 112443 47888887766542
Q ss_pred C---CCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecC
Q 003304 706 K---QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQA 767 (832)
Q Consensus 706 ~---~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~ 767 (832)
. +.+|+-||| || +.||+. +..+++.+++- +|.+|-..|+. .++|..
T Consensus 423 ~~~~~~~PDLili--DG-GkgQl~--------aa~~~l~~lg~----~i~v~glaK~~-e~i~~~ 471 (567)
T PRK14667 423 KEGENPMPDLWLI--DG-GKGQLS--------VGIEVRDRLGL----NIKVFSLAKKE-EILYTE 471 (567)
T ss_pred cccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEecC-cEEEcC
Confidence 2 148998888 77 456654 44567777653 36677777875 445543
No 23
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=65.88 E-value=41 Score=34.45 Aligned_cols=80 Identities=26% Similarity=0.316 Sum_probs=39.8
Q ss_pred CCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecCCccceeeEEEEEccCCceeeccccccccCCChHHHHHHH--HHHHHH
Q 003304 626 DTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIREL--LLDFYR 703 (832)
Q Consensus 626 ~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~--l~~f~~ 703 (832)
..+.+|-|+|++|... +.-.++++|.- ++++..-....++...-....|..+. .++|. +.+.++
T Consensus 23 ~~~~~I~gvDiS~~~~---~~~~vaa~Vv~-~~~~~~~~~~~~~~~~~~~PYIPG~L----------afRE~p~l~~~~~ 88 (208)
T cd06559 23 GEVRLVAGVDVSYKKD---GDLAVAAAVVL-DYPDLEVVETAVAVGEVTFPYIPGLL----------AFREGPPLLEALE 88 (208)
T ss_pred CCccEEEEEEeeeccC---CCeEEEEEEEE-ECCCCcEEEEEEEEEecCCCCcchhH----------HHhhHHHHHHHHH
Confidence 4678999999999752 12355555433 43333333332222222222233322 44444 443344
Q ss_pred HhCCCCCcEEEEEecCC
Q 003304 704 TSKQRKPKQIIIFRDGV 720 (832)
Q Consensus 704 ~~~~~~P~~IIiyRDGV 720 (832)
+-. .+|+-|+|=-.|+
T Consensus 89 ~l~-~~PDlilVDG~G~ 104 (208)
T cd06559 89 KLK-TKPDLLLVDGHGI 104 (208)
T ss_pred hCC-CCCCEEEEeCCcc
Confidence 332 6899888833344
No 24
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=64.19 E-value=52 Score=39.52 Aligned_cols=109 Identities=22% Similarity=0.269 Sum_probs=63.1
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHh
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (832)
.|.-|-++|+||-.+. -.|+++|.-.|. |.-..|.- ..+.. .+-.+|. .+|+|.|...|...
T Consensus 395 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YRk-f~Ik~--~~~~DDy----------a~M~Evl~RR~~r~ 457 (624)
T PRK14669 395 LPSRIECFDISHIQGA----ETVASMVVWEDGKMKKSDYRK-FIIKT--VVGVDDF----------ASMREVVTRRYSRL 457 (624)
T ss_pred CCCeEEEEECCccCCC----CceEEEEEEECCccChhhCCe-eecCC--CCCCCHH----------HHHHHHHHHHhhcc
Confidence 4567899999997542 368888877764 22122321 22211 1112443 47778777666442
Q ss_pred C--C-CCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeec
Q 003304 706 K--Q-RKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQ 766 (832)
Q Consensus 706 ~--~-~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~ 766 (832)
. + .+|+-||| || +.||+.. ..+++.+++-+ .+.+|-..|+...=|+|
T Consensus 458 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~elgl~---~i~vigLaK~~e~i~~p 507 (624)
T PRK14669 458 QEEKQPMPGLVLI--DG-GLGQLHA--------AAEALEAIGIT---DQPLASIAKREEIIYVF 507 (624)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCC---CCcEEEEecCCeEEECC
Confidence 1 1 48998888 87 4577644 46677766532 26677777876443334
No 25
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=60.78 E-value=60 Score=39.04 Aligned_cols=107 Identities=31% Similarity=0.329 Sum_probs=63.7
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHh
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (832)
.|.-|-|+|+||-.+. -.|+++|.-.|. |.-..|.- ..+... +-.+|. .+|.|.|...|...
T Consensus 414 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YR~-f~ik~~--~~~dDy----------~~m~Evl~RR~~r~ 476 (621)
T PRK14671 414 LPRRIECFDNSHFQGT----DYVSSMVCFVDGKPKKSDYRK-FKLRSF--EGSDDY----------AAMREVVTRRYSGS 476 (621)
T ss_pred CCCEEEEEECCccCCC----CceEEEEEEECCccChhhCCe-eecCCC--CCCCHH----------HHHHHHHHHHhhcc
Confidence 4567899999997642 368888877764 22223332 222211 112343 47888887766542
Q ss_pred C---CCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeec
Q 003304 706 K---QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQ 766 (832)
Q Consensus 706 ~---~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~ 766 (832)
. +.+|+-||| || +.||+. +..+++.+++- .+.+|-..||. .++|.
T Consensus 477 ~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~~lg~----~i~viglaK~~-e~i~~ 524 (621)
T PRK14671 477 LAEELPLPDLIVI--DG-GKGQVN--------SAWKVLQELGL----SVPVIGLAKRL-EEIFT 524 (621)
T ss_pred ccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEecc-cEEEe
Confidence 1 258998888 77 456654 34667776643 36677778854 44554
No 26
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=55.37 E-value=1.1e+02 Score=36.89 Aligned_cols=100 Identities=28% Similarity=0.319 Sum_probs=58.6
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHh
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (832)
.|.-|-++|+||-.+ .-.|+++|.-.|. |.-..|.- ..+... +-.+|. .+|+|.|...|...
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dDy----------a~m~Evl~RR~~~~ 444 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFEDGGPDKSEYRR-YNIKGV--TGGDDY----------AAMREVLTRRYSRL 444 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEECCccChhhCCe-eecCCC--CCCCHH----------HHHHHHHHHHhhcc
Confidence 466789999999754 2368888877764 22223332 222211 112443 47788877666542
Q ss_pred ---CCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEee
Q 003304 706 ---KQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQK 758 (832)
Q Consensus 706 ---~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~K 758 (832)
...+|+-||| || +.||+.. ..+++.+++- .+.+|-..|
T Consensus 445 ~~~~~~~PDLili--DG-GkgQl~~--------a~~~l~~lg~----~i~v~glaK 485 (598)
T PRK00558 445 LKEFGPLPDLILI--DG-GKGQLNA--------AKEVLEELGL----DIPVVGLAK 485 (598)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHCCC----CCcEEEEEe
Confidence 1258998888 87 4677654 4567776653 255565555
No 27
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=54.62 E-value=1e+02 Score=37.40 Aligned_cols=100 Identities=22% Similarity=0.300 Sum_probs=59.6
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHh
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (832)
.|.-|-++|+||-... -.++|+|.-.|. |.-..|.. ..+... + .+|. .+|.|.+...|...
T Consensus 471 ~p~rIE~~DiSh~~G~----~~v~~mVvf~~G~p~k~~YR~-f~i~~~--~-~dD~----------~~m~ev~~RR~~~~ 532 (694)
T PRK14666 471 PPHRIEAVDVSHTGGR----NTRVGMVVFEDGKPARDAYRT-YAFEDG--E-GDDY----------GTLAAWAGRRVESG 532 (694)
T ss_pred CCCEEEEEECcccCCc----CceEEEEEEECCccChhhCCe-eeCCCC--C-CChH----------HHHHHHHHHHhcCC
Confidence 5678899999997642 367888877764 22122322 222111 1 1443 47888887766532
Q ss_pred CCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEee
Q 003304 706 KQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQK 758 (832)
Q Consensus 706 ~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~K 758 (832)
..+|+-||| || +.||+.. ..+++.+++-+ ..+.+|-..|
T Consensus 533 -~~~PDLili--DG-G~gQl~a--------a~~~l~e~g~~--~~~~v~~laK 571 (694)
T PRK14666 533 -PPWPDLLLV--DG-GRGQLAA--------VVRALEEAGMG--GLFAVASIAK 571 (694)
T ss_pred -CCCCCEEEE--cC-CHHHHHH--------HHHHHHHcCCC--CCccEEEEec
Confidence 258998888 77 4577654 45677776542 2366776666
No 28
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=50.58 E-value=92 Score=37.14 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=62.0
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHh
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTS 705 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~ 705 (832)
.|.-|-++|+||-.+. -.|+++|.-.|. |.-..|. ...+.. + .+|. .+|.|.|...|...
T Consensus 374 ~p~rIE~fDiSh~~G~----~~V~s~Vvf~~G~~~k~~YR-~f~i~~-~---~dD~----------~~m~Evl~RR~~r~ 434 (577)
T PRK14668 374 RPERIEGFDVSHAQGR----AVVGSNVCFVDGSAETADYR-RKKLTE-R---NDDY----------ANMRELVRWRAERA 434 (577)
T ss_pred CCCEEEEEECCccCCC----CceEEEEEEECCccCHHHcC-eecCCC-C---CChH----------HHHHHHHHHHHHhh
Confidence 3567889999997542 368888877764 2212232 222222 1 2443 47777777666442
Q ss_pred C-----CCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeec
Q 003304 706 K-----QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQ 766 (832)
Q Consensus 706 ~-----~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~ 766 (832)
. +.+|+-||| || +-||+. +..+++.+++- .+.+|-..|+.- ++|-
T Consensus 435 ~~~~~~~~~PDLili--DG-G~gQl~--------aa~~~l~elg~----~i~v~glaK~~e-~i~~ 484 (577)
T PRK14668 435 VEGRDDRPDPDLLLI--DG-GDGQLG--------AARDALAETGW----DVPAIALAKAEE-LVVT 484 (577)
T ss_pred hccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEcCCe-EEEc
Confidence 1 258998888 77 356654 44667776653 366777777653 4443
No 29
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=49.44 E-value=35 Score=31.44 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 536 VERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
+...++.++.. +..|.|+++...+...+..|...|.-.+.+.||.+..+.. .....+-+...+.++|.-
T Consensus 16 l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 16 LKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 33344555554 3467888887765345678999999889999999999886 455677778888888854
No 30
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.49 E-value=62 Score=34.97 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=47.9
Q ss_pred HHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHh
Q 003304 538 RMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINS 604 (832)
Q Consensus 538 ~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~ 604 (832)
..++.++++.+..|.|+++...++..+..|...|...+.+.||.+..+... .....-+.+.+.++|.
T Consensus 19 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (293)
T PRK14185 19 AEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQ 86 (293)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334445444334688988888765567889999999999999999988753 3444456677778874
No 31
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.42 E-value=89 Score=33.68 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=46.6
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
++.++++.+..|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 22 IQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred HHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344444323467888887766456788999988888999999988876 34555556677777774
No 32
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.58 E-value=93 Score=33.64 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=47.5
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHhc
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINSK 605 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~K 605 (832)
++.++.+.+..|.|+++...++..+..|...|...+.+.||.+..+... .....-+..++.++|.-
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 22 IDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred HHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444433223578888877665667889999999999999999998763 44555577788888843
No 33
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.40 E-value=88 Score=33.69 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 537 ERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 537 ~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
...++.++++.+..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 18 ~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 18 KTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred HHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 333444444433467888887766456788999999999999999988875 34455566778888885
No 34
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.78 E-value=1.1e+02 Score=32.90 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=47.7
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
++.++++.+..|.|+++...+...+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 28 i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 28 VERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKR 94 (287)
T ss_pred HHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344443323357898887766566788999999999999999988876 344555667888888853
No 35
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.96 E-value=96 Score=33.33 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=43.4
Q ss_pred CCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 549 ~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
..|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 30 ~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 30 IVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNN 86 (281)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357898888876566788999999999999999988875 34454456677888873
No 36
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=37.92 E-value=98 Score=34.19 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=46.8
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHh
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINS 604 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~ 604 (832)
++.++.+.+..|.|+++.+.++..+..|...|...+.+.||.+..+... .....-+...+.++|.
T Consensus 76 v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 76 VRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred HHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444334578988888775667889999999999999999888753 3444446678888874
No 37
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.74 E-value=1e+02 Score=33.20 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=53.1
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHhc--cCCccccc
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINSK--LGGINSLL 613 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~K--lGG~n~~~ 613 (832)
++.++++....|.|+++...+...+..|..+|...+.+.||.+..+... .....-+..++.++|.. .-|+|..+
T Consensus 23 i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vql 99 (283)
T PRK14192 23 VEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQH 99 (283)
T ss_pred HHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 3444443233578888887765667889999999999999999888763 34455577888888875 56776544
No 38
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.31 E-value=97 Score=33.36 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHhc
Q 003304 538 RMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINSK 605 (832)
Q Consensus 538 ~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~K 605 (832)
..++.++++....|.|+++...+...+..|...|...+.+.||.+..+... .....-+...+.++|.-
T Consensus 21 ~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 21 QKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334444443233578888877664567889999999999999999888763 44555566777888854
No 39
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=36.74 E-value=1.2e+02 Score=32.85 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=46.3
Q ss_pred HHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 541 ELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 541 ~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
+.++++.+..|.|+++...+...+..|...|...+.+.||.+-.+.. ......-+...+.++|.-
T Consensus 30 ~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 30 AQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33433323357888887766456788999999999999999988875 445555566777788743
No 40
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.36 E-value=1.1e+02 Score=33.12 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=47.4
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 22 v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (297)
T PRK14186 22 IESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQD 88 (297)
T ss_pred HHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444323357888887766456788999999999999999988876 444555667888888864
No 41
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.25 E-value=1.2e+02 Score=32.70 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=46.9
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
++.++.+....|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 23 i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 23 IEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred HHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444323357888887766456788999999899999999998876 34455567788888885
No 42
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.11 E-value=1.2e+02 Score=32.91 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=47.4
Q ss_pred HHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 539 MFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 539 ~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
.++.++.+....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 21 ~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 21 EVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344443323357898887766456788999999999999999888765 344555566788888854
No 43
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=35.99 E-value=1.2e+02 Score=33.74 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=46.7
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
++.++++.+..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+-+.+.++|.
T Consensus 93 v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 93 VSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred HHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344444433457898888876566788999999999999999988775 34445556677778874
No 44
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.03 E-value=1.2e+02 Score=32.86 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=47.1
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHhc
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINSK 605 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~K 605 (832)
++.++++.+..|.|+++...++..+..|...|...+.+.||.+-.+... .....-+.+.+.++|.-
T Consensus 21 v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 21 VEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444433223578988888764567889999999999999999888753 44555566777888753
No 45
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.65 E-value=1.2e+02 Score=32.63 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=45.9
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHh
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINS 604 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~ 604 (832)
++.++++.+..|.|+++...+...+..|...|...+.+.||.+..+... .....-+.+++.++|.
T Consensus 21 v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (282)
T PRK14180 21 VQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNN 86 (282)
T ss_pred HHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444433223578888877664567889999999999999999888753 3445556678888884
No 46
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.40 E-value=1.2e+02 Score=32.98 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=47.5
Q ss_pred HHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 537 ERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 537 ~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
...++.++.+.+..|.|+++..-++..+..|...|...+.+.||.+-.+.. ......-+...+.++|.
T Consensus 20 k~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 88 (297)
T PRK14168 20 RGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNN 88 (297)
T ss_pred HHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 333444444433457888887766456788999999999999999877765 34455556677888874
No 47
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.43 E-value=1.3e+02 Score=32.28 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=46.9
Q ss_pred HHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHh
Q 003304 539 MFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINS 604 (832)
Q Consensus 539 ~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~ 604 (832)
.++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+... .....-+.+.+.++|.
T Consensus 20 ~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 20 TVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred HHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444433 23578888877664667889999999999999999888763 3445556677888875
No 48
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.15 E-value=1.4e+02 Score=32.13 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=46.9
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
++.++.+.+..|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 22 v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 22 VAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344443323357888887766456788999998888999999987775 344555667788888853
No 49
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.36 E-value=1.4e+02 Score=32.06 Aligned_cols=66 Identities=14% Similarity=0.263 Sum_probs=47.0
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
++.++++.+..|.|+++..-++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 21 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 21 IQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344443323467888887766456788999999999999999988775 344455566788888853
No 50
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.18 E-value=1.3e+02 Score=32.31 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=46.0
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHh
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINS 604 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~ 604 (832)
++.++.+ +..|.|+++...+...+..|...|...+.+.||.+..+... .....-+.+.+.++|.
T Consensus 21 v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 21 NQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred HHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444433 23578888877664567889999999999999999998764 3444456677778874
No 51
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.76 E-value=1.4e+02 Score=31.96 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 537 ERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 537 ~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
...++.++.+....|.|.++...+...+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 19 k~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 19 KNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred HHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444443321247888887766456778999998888999999988775 344444566777888753
No 52
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.41 E-value=1.4e+02 Score=32.13 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=43.1
Q ss_pred CCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 549 ~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
..|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 31 ITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357888887766456788999999999999999988875 344555566777888754
No 53
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=31.38 E-value=3.2e+02 Score=32.69 Aligned_cols=108 Identities=27% Similarity=0.328 Sum_probs=59.8
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHH-
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRT- 704 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~- 704 (832)
.|.-|-++|.||-... -.++++|...|. |.-..|. ...+. -+-.+|. .+|.|.|..-|..
T Consensus 378 ~p~rIE~~D~Sh~~g~----~~V~smvvf~~g~~~k~~YR-ry~i~---~~~~dDy----------a~m~evl~RR~~~~ 439 (581)
T COG0322 378 APYRIECFDISHIQGE----DTVGSMVVFEDGGPSKKDYR-RYNIK---ITGGDDY----------ASMREVLTRRYSRL 439 (581)
T ss_pred CceeEEEeecCccccc----cceeEEEEEcCCCCChhhcc-ccccc---CCCCchH----------HHHHHHHHHHhhhc
Confidence 3566789999998643 256777776664 1111121 11111 0112332 3666666543333
Q ss_pred hCCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecC
Q 003304 705 SKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQA 767 (832)
Q Consensus 705 ~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~ 767 (832)
....+|+-|+| || +.||+.. .++++++++-. .. +|-+.|+-.+-|++.
T Consensus 440 ~~~~~Pdli~i--DG-GkgQl~~--------a~~vl~~l~~~--~~--viglaK~~~~~~~~~ 487 (581)
T COG0322 440 LKEELPDLILI--DG-GKGQLNA--------AKEVLKELGLD--IP--VIGLAKGEEELLLPG 487 (581)
T ss_pred cccCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCC--cc--EEEEEecCceeEecC
Confidence 23379987777 76 4677654 45677766433 22 777888877555553
No 54
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.06 E-value=1.5e+02 Score=32.25 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=43.1
Q ss_pred CCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 549 ~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
..|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 32 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 32 IEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 358898888866556788999999999999999988775 34455556677777874
No 55
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.18 E-value=1.6e+02 Score=31.69 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=46.3
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
++.++.+ +..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 23 v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 23 VVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444433 2357888887766456788999999999999999988875 344455566777788854
No 56
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.94 E-value=1.9e+02 Score=31.06 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=42.0
Q ss_pred CCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHh
Q 003304 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINS 604 (832)
Q Consensus 549 ~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~ 604 (832)
..|.|+++..-+...+..|...|...+.+.||.+-.+... .....-+-+.+.++|.
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 30 KKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578888877664567889999999999999999888753 3444445577777774
No 57
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.83 E-value=1.9e+02 Score=31.21 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=43.6
Q ss_pred CCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHhc
Q 003304 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINSK 605 (832)
Q Consensus 549 ~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~K 605 (832)
..|.|+++...++..+..|...|...+.+.||.+..+... .....-+.+++.++|.-
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578888877664567789999999999999999888763 44455567788888853
No 58
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.45 E-value=2e+02 Score=31.07 Aligned_cols=56 Identities=14% Similarity=0.308 Sum_probs=43.3
Q ss_pred CCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 549 ~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
..|.|+++...+...+..|...|...+.+.||.+..+.. ......-+..++.++|.
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888887766456788999999999999999988876 34455556688888883
No 59
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.14 E-value=2.3e+02 Score=30.40 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=44.0
Q ss_pred CCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 548 PGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 548 ~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
+..|.|+++...+...+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 24 g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467898887766456788999999999999999988876 344555566778888743
No 60
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.69 E-value=2.4e+02 Score=30.41 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=42.7
Q ss_pred CCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 550 ~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
.|.|.++...+...+..|...|...+.+.||.+-.+.. ......-+..++.++|.
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57888887766566788999999999999999987775 34555566677788874
No 61
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.63 E-value=2.1e+02 Score=30.97 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=43.3
Q ss_pred CCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc
Q 003304 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK 605 (832)
Q Consensus 549 ~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K 605 (832)
..|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 30 VTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357888887766456788999999999999999988775 344555567778888853
No 62
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=24.40 E-value=1.3e+02 Score=30.13 Aligned_cols=45 Identities=33% Similarity=0.571 Sum_probs=33.9
Q ss_pred EEEEEEEEEeccCCeEEEEEEEEeecCCcccccCchhhHHHHHHHHHHh
Q 003304 50 LLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTY 98 (832)
Q Consensus 50 l~tN~f~i~~~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~ 98 (832)
+-==+|+..++..+.++|-|.|.+ .+...+|++.+.|++.+....
T Consensus 105 vgf~~Frf~vd~g~~vlYcyEvqv----~~~yR~kGiGk~LL~~l~~~a 149 (202)
T KOG2488|consen 105 VGFTMFRFTVDTGDPVLYCYEVQV----ASAYRGKGIGKFLLDTLEKLA 149 (202)
T ss_pred eeEEEEEEEcccCCeEEEEEEEee----hhhhhccChHHHHHHHHHHHH
Confidence 333468888887788999999998 445667888888888776553
No 63
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.30 E-value=2.1e+02 Score=30.76 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=42.5
Q ss_pred CCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 549 GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 549 ~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
..|.|+++...+...+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 29 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 29 VQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357888887766456788999999999999999988775 34455556677778774
No 64
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=24.02 E-value=95 Score=31.43 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=30.2
Q ss_pred eEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccccCChhHHHHHH
Q 003304 552 QFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTKINDQYLTNVL 599 (832)
Q Consensus 552 ~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~~q~~~ni~ 599 (832)
+++++--.. +....|+.||+ ..+.|.+|-|++--+.+.|.+.|++
T Consensus 133 Siv~ftd~w-rP~SfydkI~~--Nr~~glHTLcLLDIkvkEqs~enl~ 177 (272)
T KOG3123|consen 133 SIVFFTDNW-RPESFYDKIKE--NRQLGLHTLCLLDIKVKEQSVENLA 177 (272)
T ss_pred EEEEEccCc-CchhHHHHHHH--hhhcCceeEEEEEEeeccHHHHHHh
Confidence 444443322 45678999996 6789999999997555555555544
No 65
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=23.81 E-value=2.2e+02 Score=30.55 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=47.3
Q ss_pred HHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 539 MFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 539 ~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
..+.++++....|.|+++..-+.-.+..|.+.|...+.+.|+.+..... ......-+-++..++|.
T Consensus 19 ~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~ 85 (283)
T COG0190 19 KVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNA 85 (283)
T ss_pred HHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcC
Confidence 3344444333467888887766345788999999999999999988876 44556667777777763
No 66
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.09 E-value=2.4e+02 Score=30.40 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=42.0
Q ss_pred CCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc-cCChhHHHHHHHHHHh
Q 003304 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINS 604 (832)
Q Consensus 550 ~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~-~~~~q~~~ni~lKiN~ 604 (832)
.|.|+++...++..+..|...|...+.+.||.+-.+... .....-+.+.+.++|.
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578888877664567889999999999999999888763 3444456677788874
Done!