Query 003304
Match_columns 832
No_of_seqs 197 out of 1105
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 20:38:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 4E-155 1E-159 1400.3 77.2 742 30-832 22-791 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 3E-144 1E-148 1300.6 65.0 774 29-832 13-975 (1046)
3 1yvu_A Hypothetical protein AQ 100.0 4.4E-87 1.5E-91 785.6 36.6 584 105-832 47-665 (706)
4 1u04_A Argonaute, hypothetical 100.0 2.4E-81 8.3E-86 735.2 36.3 631 47-832 3-727 (771)
5 2yhb_A QDE-2, post-transcripti 100.0 3.9E-81 1.3E-85 701.5 26.7 340 471-832 2-371 (437)
6 3ho1_A Argonaute; argonaute, p 100.0 1.8E-69 6.1E-74 624.0 44.4 612 47-832 6-641 (685)
7 2yha_A Post-transcriptional ge 100.0 8.7E-64 3E-68 554.1 27.2 297 471-832 2-322 (388)
8 2w42_A PIWI, putative uncharac 100.0 9.7E-45 3.3E-49 406.9 11.9 330 448-832 5-377 (427)
9 1vyn_A Argonaute2; nucleic aci 99.9 7.8E-27 2.7E-31 222.2 7.9 130 264-406 2-142 (143)
10 4g0o_A Protein argonaute 5; MI 99.9 5E-25 1.7E-29 209.0 11.2 132 473-613 2-139 (139)
11 4g0x_A Protein argonaute 1; MI 99.9 1.9E-24 6.6E-29 207.1 12.5 138 473-613 2-147 (147)
12 4g0m_A Protein argonaute 2; MI 99.9 2.5E-24 8.5E-29 207.1 10.5 139 473-613 2-150 (150)
13 3luc_A Protein argonaute-2; MI 99.9 6E-24 2E-28 201.5 12.0 129 473-610 2-138 (138)
14 2xfm_A MIWI, PIWI-like protein 99.9 2.5E-24 8.6E-29 206.4 6.8 134 265-417 1-149 (150)
15 3mj0_A Protein argonaute-2; ar 99.9 5.2E-23 1.8E-27 189.9 8.7 113 265-390 1-124 (124)
16 3qir_A PIWI-like protein 2; st 99.9 4.6E-23 1.6E-27 195.7 6.0 131 265-415 1-147 (148)
17 3o7v_X PIWI-like protein 1; PI 99.8 1.5E-20 5.1E-25 172.7 9.1 114 267-399 2-124 (124)
18 1r6z_P Chimera of maltose-bind 99.8 4.7E-20 1.6E-24 214.0 8.6 124 257-393 375-509 (509)
19 2qvw_A GLP_546_48378_50642; di 98.6 2.4E-08 8.2E-13 118.5 5.7 85 289-385 151-254 (756)
20 2nrr_A Uvrabc system protein C 82.6 9.5 0.00033 35.7 10.7 103 628-766 17-120 (159)
21 3qbz_A DDK kinase regulatory s 76.0 0.78 2.7E-05 42.7 1.1 66 696-761 46-119 (160)
22 2nrt_A Uvrabc system protein C 74.4 19 0.00065 35.7 10.7 102 628-765 22-124 (220)
23 3c65_A Uvrabc system protein C 44.0 83 0.0028 31.2 9.0 100 628-759 14-118 (226)
24 4b4u_A Bifunctional protein fo 39.3 39 0.0013 35.2 5.9 65 540-604 43-108 (303)
25 4a26_A Putative C-1-tetrahydro 29.3 87 0.003 32.5 6.7 76 538-613 24-103 (300)
26 4a5o_A Bifunctional protein fo 28.6 93 0.0032 32.0 6.7 74 539-612 24-100 (286)
27 1a4i_A Methylenetetrahydrofola 27.7 86 0.0029 32.6 6.3 68 537-604 21-90 (301)
28 1b0a_A Protein (fold bifunctio 25.9 86 0.003 32.3 5.9 68 537-604 20-88 (288)
29 3l07_A Bifunctional protein fo 23.5 95 0.0032 32.0 5.6 74 539-612 23-99 (285)
30 3p2o_A Bifunctional protein fo 22.7 1.1E+02 0.0039 31.4 6.0 74 539-613 23-99 (285)
31 2c2x_A Methylenetetrahydrofola 22.5 1.2E+02 0.0041 31.1 6.2 65 539-604 22-87 (281)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=3.6e-155 Score=1400.30 Aligned_cols=742 Identities=34% Similarity=0.585 Sum_probs=641.4
Q ss_pred CCcccccCCCCCCCCCCEEEEEEEEEEEEeccCCeEEEEEEEEeecCCcccccCchhhHHHHHHHHHHhhh-hhcCCceE
Q 003304 30 LPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSA-ELAGKRFA 108 (832)
Q Consensus 30 ~~~~~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~~-~~~~~~~~ 108 (832)
.....+++|||+||.|++|.|+||||+|+++ +..+|||||+|+| +.++++++|++++++++++.. .|++..+|
T Consensus 22 ~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~a 95 (861)
T 4f3t_A 22 GYAFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKPV 95 (861)
T ss_dssp ---CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCCE
T ss_pred cccccCCCCCCCCCCCcEEEEEeeeEEEECC--CCceeeeeEEeCC----CcCcHHHHHHHHHHHHHHhhhhhhcCceEE
Confidence 4466788999999999999999999999874 4679999999965 444567889999998887643 35566789
Q ss_pred EeCCcceeecCCCCCCceEEEEEeccchhcccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEecccChHHHHHHHcCC
Q 003304 109 YDGEKSLYTVGPLPQNKFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGN 188 (832)
Q Consensus 109 yDG~~~lyS~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~l~~l~~~l~g~ 188 (832)
|||+++|||+++||.+..++++.+.... ..+.+.|+|+|++++++++++|.+|++|.
T Consensus 96 fDG~~~l~s~~~L~~~~~~~~~~v~~~~-----------------------~~~~~~~~V~I~~~~~i~l~~L~~~l~g~ 152 (861)
T 4f3t_A 96 FDGRKNLYTAMPLPIGRDKVELEVTLPG-----------------------EGKDRIFKVSIKWVSCVSLQALHDALSGR 152 (861)
T ss_dssp ECSSSEEEESSCCSCSSCEEEEECCC------------------------------CEEEEEEEEEEEEHHHHHHHHHTC
T ss_pred EcCcceEEECCcCCCCCcceEEEEecCC-----------------------CCCCcEEEEEEEEeeecCHHHHHHHhcCC
Confidence 9999999999999976544433322110 11367899999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHhccccccCceecccccccCCCCCeeecCCCEEeeecceEEEEeeCCeeeEeeeeeeeeeecccc
Q 003304 189 EVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKPGP 268 (832)
Q Consensus 189 ~~~~~~~~iq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDv~~~~F~~~~~ 268 (832)
....+.++||+||+|||+.+. ..+..+||+||++..+...++|+|+|+|+||++|||+++++|+||+|+++++|++++|
T Consensus 153 ~~~~~~~~iq~Lniilr~~~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~ 231 (861)
T 4f3t_A 153 LPSVPFETIQALDVVMRHLPS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQP 231 (861)
T ss_dssp SSSCCHHHHHHHHHHHHHHHH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEE
T ss_pred CCCCcHHHHHHHHHHHHhhcc-ccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCc
Confidence 877789999999999999654 5688999999987655446789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC-------CcccHHHHHhhhcCcEEEeec---cCceEEEeecCCCCCCcccccccccCCCCCCCCCc
Q 003304 269 VIDFLIANQNVREP-------RFIDWTKAKKMLRNLRVKPRH---RNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGET 338 (832)
Q Consensus 269 l~d~l~~~~~~~~~-------~~~~~~~i~~~Lkgl~V~~~~---~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g 338 (832)
|+|+|.+..+.++. .+.++.+++++|+|++|.++| ++|+|+|.||++.++++.+|.++..+ | ++
T Consensus 232 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~--g----~~ 305 (861)
T 4f3t_A 232 VIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES--G----QT 305 (861)
T ss_dssp HHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS--S----CE
T ss_pred HHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCC--C----Cc
Confidence 99999886544322 122467899999999999999 46899999999989999999764321 2 13
Q ss_pred eeeeHHHHHHHhcCCccccCCCCcEEecCCCCCcccccccceEEcCCccccccCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003304 339 LEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDA 418 (832)
Q Consensus 339 ~~isV~eYf~~~Y~i~L~~~p~lP~v~vg~~~k~~~lP~Elc~i~~~Q~~~~~l~~~q~~~mik~~~~~P~~R~~~i~~~ 418 (832)
.+|||+|||+++|||+|+| |+||||++|++++++|||||||.|+|||++.++|+++|+++||++|+.+|.+|.+.|.++
T Consensus 306 ~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~ 384 (861)
T 4f3t_A 306 VECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKL 384 (861)
T ss_dssp EEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred eeEEHHHHHHHhcCcccCC-CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5899999999999999999 999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCcccccceeeEEcccceeeeeEEecCCeeeeCCcc--ccCCCCCccccCCceeecccccceEEEEEeCCC---
Q 003304 419 LRSYSYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSE--DCIPRNGRWNFNNKRFLEATRIDRWIVVNFSAR--- 493 (832)
Q Consensus 419 ~~~l~~~~~~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~~--~~~~~~g~W~~~~~~f~~p~~l~~W~vv~~~~~--- 493 (832)
++.++++.+++|++|||+|+++|++|+||+||||+|.|+++. ...+.+|+|++++++|++|+++++|++++++..
T Consensus 385 ~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~ 464 (861)
T 4f3t_A 385 MRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQC 464 (861)
T ss_dssp HHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTS
T ss_pred HHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcccc
Confidence 999888888999999999999999999999999999998753 246789999999999999999999999998642
Q ss_pred --ccHHHHHHHHHHHhhhcCcccCC-CceeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHH
Q 003304 494 --CDTSHISRELINCGRNKGIHIER-PFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPW 570 (832)
Q Consensus 494 --~~~~~f~~~L~~~~~~~G~~i~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~i 570 (832)
..++.|++.|.+.|+.+||.+.. |....... ..+.++.+++.+++.. .+++|||||+|+ + ++.|+.|
T Consensus 465 ~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~-------~~~~~~~~~~~l~~~~-~~~qlvl~Ilp~-~-~~~Y~~I 534 (861)
T 4f3t_A 465 TEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ-------GADSVEPMFRHLKNTY-AGLQLVVVILPG-K-TPVYAEV 534 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECC-------SSSSHHHHHHHHHHHS-TTCCEEEEEESS-S-CTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecC-------chHHHHHHHHHHHhhc-CCCcEEEEEeCC-C-ccHHHHH
Confidence 14899999999999999999975 54332211 1246788888888754 358999999997 4 6799999
Q ss_pred HHHhhcccCceeeeeccc---cCChhHHHHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCCCC
Q 003304 571 KKKSLSDFGIATQCISPT---KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIP 647 (832)
Q Consensus 571 K~~~~~~~gI~TQcv~~~---~~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~~p 647 (832)
|++||++.||+||||+.+ +.++|++.||+||||+||||+||.+.+. ..|.+...+|||||+||+||+++....|
T Consensus 535 K~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~p 611 (861)
T 4f3t_A 535 KRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKP 611 (861)
T ss_dssp HHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCC
T ss_pred HHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCc
Confidence 999999999999999975 4579999999999999999999988642 2344556899999999999998765689
Q ss_pred eEEEEEEeecCCccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCCCchhHHH
Q 003304 648 SVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQ 727 (832)
Q Consensus 648 Si~avVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~ 727 (832)
||||||||+|+ .+++|.+.+++|.+++|+|++|. +|++++|.+|++.+ +.+|++|||||||||||||++
T Consensus 612 Siaa~vaS~d~-~~~~y~~~~~~Q~~~~E~i~~l~---------~~~~~~L~~~~~~~-~~~P~~IiiyRDGVsegq~~~ 680 (861)
T 4f3t_A 612 SIAAVVGSMDA-HPNRYCATVRVQQHRQEIIQDLA---------AMVRELLIQFYKST-RFKPTRIIFYRDGVSEGQFQQ 680 (861)
T ss_dssp EEEEEEEECSS-SSCCEEEEEEEESTTCCSCTTHH---------HHHHHHHHHHHHHH-SCCCSEEEEEEESCCGGGHHH
T ss_pred eEEEEEEEcCC-CcceEEEEEEEcCCCccHHHHHH---------HHHHHHHHHHHHHh-CCCCceEEEEecCCChHHHHH
Confidence 99999999997 79999999999999999999864 69999999998875 599999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecCC------CCCCCCCceeeecccccCCcceEEEeeecCCcc
Q 003304 728 VLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQAS------GPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIG 801 (832)
Q Consensus 728 V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~------~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qG 801 (832)
|+++|+++|++||.+++.+|+|+||||||+||||+|||+.+ ..+||+||||||++||+|..||||||||+++||
T Consensus 681 v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qG 760 (861)
T 4f3t_A 681 VLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQG 760 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSS
T ss_pred HHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeecCCcccccccCCCCCceeccCccccCCCCEEEEEEEecccc
Confidence 99999999999999999899999999999999999999964 247999999999999999999999999999999
Q ss_pred ccCCCeEEEEecCCCCChHHHHHHHHhcccC
Q 003304 802 TSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 802 TarPt~Y~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
|||||||+||+||+++++|+||+|||+|||+
T Consensus 761 TarPthY~Vl~d~~~~~~d~lq~lty~Lc~~ 791 (861)
T 4f3t_A 761 TSRPSHYHVLWDDNRFSSDELQILTYQLCHT 791 (861)
T ss_dssp CCCCEEEEEEEETTCCCHHHHHHHHHHHTTC
T ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999996
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.4e-144 Score=1300.61 Aligned_cols=774 Identities=22% Similarity=0.318 Sum_probs=592.8
Q ss_pred CCCcccccCCCCCCCCCCEEEEEEEEEEEEeccCC-------------------eEEEEEEEEeecCCcc---------c
Q 003304 29 DLPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTD-------------------AVFYHYTVTISGEDKR---------I 80 (832)
Q Consensus 29 ~~~~~~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~-------------------~~~y~Y~V~i~~~~~~---------~ 80 (832)
-..-+.++.||||||.|++|.|+||||.|.+.... ..||+|+|+|+++..+ +
T Consensus 13 ~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~ 92 (1046)
T 4f1n_A 13 THAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPP 92 (1046)
T ss_dssp CCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC---------------
T ss_pred ccccccCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCcc
Confidence 34456788999999999999999999999987531 3799999999875322 1
Q ss_pred -ccCchhhHHHHHHHHHHh--hhhhcCCceEEeCCcceeecCCCC---CCceEEEEEec-----cchhcccCCCCCCCCC
Q 003304 81 -AKGKGIGRKVVDKLYQTY--SAELAGKRFAYDGEKSLYTVGPLP---QNKFEFTVVLE-----ESRAKQQNGSPRGRDS 149 (832)
Q Consensus 81 -~~~k~~~r~i~~~l~~~~--~~~~~~~~~~yDG~~~lyS~~~L~---~~~~~~~v~~~-----~~~~~~~~~~~~~~~~ 149 (832)
...++..++|+.+|+++. ...+ +..+||||+++|||.++|| .....+.|... ++...+. ..+++-
T Consensus 93 ~~~~~~k~~~ii~~ll~e~~~~~~~-~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~---~~~~~~ 168 (1046)
T 4f1n_A 93 QELSKPKKYELIEALLDEDEILYKY-RDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAP---SNKASL 168 (1046)
T ss_dssp --CCHHHHHHHHHHHHHSCTTTGGG-TTSEEECSSSEEEESSCGGGSTTCTTCCC-------------------------
T ss_pred cccchhHHHHHHHHHHHhcchhhhc-CCceeecCccceEECCcCCccccCCCceEEeccccccccCCcccc---cccccc
Confidence 113556788998888762 1223 4569999999999999999 33335666554 1110000 000000
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEecccChHHHHHHHcCCCCCc--h---hHHHHHHHHHHhcccccc-C--ceecccccc
Q 003304 150 PIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDN--T---QDALRVLDIVLRQQAANW-G--CLLVRQSFF 221 (832)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~v~i~~~~~i~l~~l~~~l~g~~~~~--~---~~~iq~lniilr~~~~~~-~--~~~~g~~ff 221 (832)
...+. ...+.+.|+|+|+++++|++.+|.+|+.|..... . .+++++|++||++.+... + +...+++||
T Consensus 169 ~~~~~----~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF 244 (1046)
T 4f1n_A 169 QKKID----PELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFF 244 (1046)
T ss_dssp -------------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEE
T ss_pred ccccc----ccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccc
Confidence 00011 1235788999999999999999999999986542 1 678999999999997755 2 333456788
Q ss_pred cCCC-CCeeecCCCEEeeecceEEEEeeCCeeeEeeeeeeeeeecc-----------------ccHHHHHHHhcC-----
Q 003304 222 HDDS-RNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKP-----------------GPVIDFLIANQN----- 278 (832)
Q Consensus 222 ~~~~-~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDv~~~~F~~~-----------------~~l~d~l~~~~~----- 278 (832)
..+. ....+||+|+|+|+|||+|||++.++|+||||+++++||++ ++|+|+|.++.+
T Consensus 245 ~~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~ 324 (1046)
T 4f1n_A 245 IFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAI 324 (1046)
T ss_dssp ECSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhcccccc
Confidence 6543 34678999999999999999999999999999999999985 799999877543
Q ss_pred ---------CCCCCcccH-------HHHHhhhcCcEEEeeccC---------------ceEEEeecCCCCCCcccccccc
Q 003304 279 ---------VREPRFIDW-------TKAKKMLRNLRVKPRHRN---------------MEFKIVGLSEKPCNQQFFPMKV 327 (832)
Q Consensus 279 ---------~~~~~~~~~-------~~i~~~Lkgl~V~~~~~~---------------r~~~I~~l~~~~a~~~~F~~~~ 327 (832)
.+.+...++ .+++++|+||+|.++|.+ +.|+|.||+..++.+.+|.+++
T Consensus 325 ~~~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~ 404 (1046)
T 4f1n_A 325 RDIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLE 404 (1046)
T ss_dssp HSSSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC-----
T ss_pred ccccccccccCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccC
Confidence 112222355 689999999999999954 3699999999999999998764
Q ss_pred cC--CCC--CCCCCceeeeHHHHHHHhcCCccccCCCCcEEecCCCCCcccccccceEEcCCccccccCCHHHHHHHHHH
Q 003304 328 KS--TEG--TNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEK 403 (832)
Q Consensus 328 ~~--~~g--~~~~~g~~isV~eYf~~~Y~i~L~~~p~lP~v~vg~~~k~~~lP~Elc~i~~~Q~~~~~l~~~q~~~mik~ 403 (832)
.+ ..| ....+++++||+|||+++||++|+| |+||||++|++ .+|||||||.|+|||+|+++|++ +++||++
T Consensus 405 ~~~~~~~~~~~g~~~~~iTVadYFk~kYni~Lky-P~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKf 479 (1046)
T 4f1n_A 405 SSLKKNSAPKPNEKPININTIDYFKRKYDITLKY-PDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDF 479 (1046)
T ss_dssp ------------------CHHHHHHHHSCCCCSC-TTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHH
T ss_pred CcccccccccCCcCceEEEHHHHHHHHhCcccCC-CCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHHHH
Confidence 21 001 0000136899999999999999999 99999999985 37999999999999999999987 4799999
Q ss_pred hcCCHHHHHHHHHHHHH-----hccCCCcccccceeeEEcccceeeeeEEecCCeeeeCCccc----------cCCCCCc
Q 003304 404 SRQKPQDRMRTLTDALR-----SYSYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSED----------CIPRNGR 468 (832)
Q Consensus 404 ~~~~P~~R~~~i~~~~~-----~l~~~~~~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~~~----------~~~~~g~ 468 (832)
|+++|.+|++.|.+... .+..+.+++|++|| +|+.+|++|+||||+||.|.|+++.. ..+.+|+
T Consensus 480 Aa~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~ 558 (1046)
T 4f1n_A 480 SAIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGN 558 (1046)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTB
T ss_pred HccCcHHHHHHHHHHHHHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCCc
Confidence 99999999999987642 23446688999999 99999999999999999999987542 3457899
Q ss_pred cccCCceeecccc-cceEEEEEeC-CC--------ccHHHHHHHHHHHhhhcCcccCCCc-eeeec-c--c---------
Q 003304 469 WNFNNKRFLEATR-IDRWIVVNFS-AR--------CDTSHISRELINCGRNKGIHIERPF-TLIEE-D--Q--------- 525 (832)
Q Consensus 469 W~~~~~~f~~p~~-l~~W~vv~~~-~~--------~~~~~f~~~L~~~~~~~G~~i~~p~-~~~~~-~--~--------- 525 (832)
|||++++|++|+. +.+|.++++. .. .++..|++.|.+.|+.+||.+..|. .+... . +
T Consensus 559 Wnm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~ 638 (1046)
T 4f1n_A 559 WNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGR 638 (1046)
T ss_dssp CCCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC-------
T ss_pred ccCCCCEEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCcccccccccccccccccc
Confidence 9999999999875 5667665442 21 2578999999999999999998641 11110 0 0
Q ss_pred cccCC------------------ChhHHHHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc
Q 003304 526 QTRRG------------------NPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP 587 (832)
Q Consensus 526 ~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~ 587 (832)
..+.. ......+..+..+.+.. ..++|||||+|+++++++|+.||++||+++||+||||+.
T Consensus 639 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~ 717 (1046)
T 4f1n_A 639 GGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVW 717 (1046)
T ss_dssp ---------------------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEH
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHHhc-CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEeh
Confidence 00000 00012234444454443 367999999999336789999999999999999999997
Q ss_pred c---cCChhHHHHHHHHHHhccCCcccccccccccCCCCcc----CCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecCCc
Q 003304 588 T---KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIK----DTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPL 660 (832)
Q Consensus 588 ~---~~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~----~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~~~ 660 (832)
+ +.++||++||+||||+||||+||.++.. .++++. ..+|||||+||+|++++ ..+||||||||+|+ .
T Consensus 718 ~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d~-~ 791 (1046)
T 4f1n_A 718 DNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSYDD-K 791 (1046)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECCSS-S
T ss_pred hhhccccHHHHHHHHHHHHHhcCCeeeecccc---ccccccccccCCceEEEeeeeecCCCC--CCCeeeEEEEEECC-C
Confidence 4 4678999999999999999999999753 233332 34799999999995333 24599999999997 8
Q ss_pred cceeeEEEEEccC-CceeeccccccccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHH
Q 003304 661 ISRYRAAVRTQSS-KVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKA 739 (832)
Q Consensus 661 ~~~y~~~~~~Q~~-~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a 739 (832)
+++|.+.+++|.+ ++|+|++|. +|+.++|+.|++.+++.+|++|||||||||||||.+|+++|+++|++|
T Consensus 792 ~t~y~s~~~~Q~~~~~Eii~~L~---------~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a 862 (1046)
T 4f1n_A 792 FTQFPGDYMLQDGPGEEIITNVG---------SLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKES 862 (1046)
T ss_dssp CCCCCEEEEEEEEETCCSCTTGG---------GGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHH
T ss_pred cCeEeeEEEEecCCCccHHHHHH---------HHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999998 999999875 599999999987657899999999999999999999999999999999
Q ss_pred HHHhC------CCCCCcEEEEEEeeccceeeecCCC--------------CCCCCCceeeecccccCCcceEEEeeecCC
Q 003304 740 YQHLG------EADIPKFTVIVAQKNHHTKLFQASG--------------PENVPPGTVVDTRIVHPRNYDFYMCAHAGM 799 (832)
Q Consensus 740 ~~~~~------~~~~pkit~Ivv~Krh~~Rff~~~~--------------~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~ 799 (832)
|.++. .+|+|+||||||+||||+|||+.+. .+|++||||||++||+|..||||||||.++
T Consensus 863 ~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~ 942 (1046)
T 4f1n_A 863 VRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQAL 942 (1046)
T ss_dssp HHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCC
T ss_pred HHHhhhhcccccCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEccccC
Confidence 99985 5799999999999999999998531 379999999999999999999999999999
Q ss_pred ccccCCCeEEEEecCCCCChHHHHHHHHhcccC
Q 003304 800 IGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 800 qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
|||||||||+||+||+++++|+||+|||+|||+
T Consensus 943 qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~ 975 (1046)
T 4f1n_A 943 KGTGVPCHYWCLYDENQSTSDYLQEICNNLCYI 975 (1046)
T ss_dssp SSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSC
T ss_pred CCcccCcEEEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999996
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=4.4e-87 Score=785.59 Aligned_cols=584 Identities=16% Similarity=0.175 Sum_probs=437.2
Q ss_pred CceEEeCCcceeecCCCCCCceEEEEEeccchhcccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEecccChHHHHHH
Q 003304 105 KRFAYDGEKSLYTVGPLPQNKFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALA 184 (832)
Q Consensus 105 ~~~~yDG~~~lyS~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~l~~l~~~ 184 (832)
+.+.|-...-.|..++.+.+..-.. .. .+. .|+|++++++...
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------------------~~~--~~~~~~~~~~~~~----- 89 (706)
T 1yvu_A 47 GLPTFRREDEFWCAGKVEKDTLYLT--LS----------------------------NGE--IVELKRVGEEEFR----- 89 (706)
T ss_dssp CSCEEEETTEEEESSCCTTCCCEEE--EC----------------------------SSS--CEEEEECCCEECC-----
T ss_pred CCccccccccceeccccccceEEEE--cC----------------------------CCC--EEEEEEEEEeecc-----
Confidence 4566777778888888876543211 11 122 5668999988720
Q ss_pred HcCCCCCchhHHHHHHHHHHhccccccCceecccccccCCCCCeee-cCCCEEeeecceEEEEeeC-CeeeEeeeeeeee
Q 003304 185 LKGNEVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVD-VGGGVSGIRGFHSSFRPTQ-GGLSLNMDVSTTM 262 (832)
Q Consensus 185 l~g~~~~~~~~~iq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~-l~~g~e~~~Gf~~Svr~~~-~~l~LniDv~~~~ 262 (832)
| .....+++|+++.+|++. ...+..+||+||++..+..++ -..++|+|+||.+||+..+ ++++||+|++|+
T Consensus 90 --~--~~~~~~~~~~~~~~~~~~--~l~~~~igr~~~~~~~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK- 162 (706)
T 1yvu_A 90 --G--FQNERECQELFRDFLTKT--KVKDKFISDFYKKFRDKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR- 162 (706)
T ss_dssp --C--CSCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-
T ss_pred --C--CCCCHHHHHHHHHHHHHc--CChHhhhCccccCccccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeee-
Confidence 0 013568999999999887 233457999999876543222 2467999999999999999 999999999999
Q ss_pred eeccccHHHHHHHhcCCCCCCcccHHHHHhhhcCcEEEeeccCceE--EEeec-CCCCCCcccccccccCCCCCCCCCce
Q 003304 263 ILKPGPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEF--KIVGL-SEKPCNQQFFPMKVKSTEGTNEGETL 339 (832)
Q Consensus 263 F~~~~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~--~I~~l-~~~~a~~~~F~~~~~~~~g~~~~~g~ 339 (832)
|.+..||+|+|.+ ... .+ -.+..+|+|++| +|+++ ++...+.++|.. |.
T Consensus 163 vlr~~Tvld~l~~-~~~-~~--------------~~~~~~y~n~ty~~riddi~~~~~~P~~~f~~------------g~ 214 (706)
T 1yvu_A 163 IQPFETLQTLLER-NDF-NP--------------KRIRVKPIGIDFVGRVQDVFKAKEKGEEFFRL------------CM 214 (706)
T ss_dssp EEESSCHHHHHHH-CCC-CC--------------TTCEEEETTCCCCEEEEEEEESTTSCHHHHHH------------HH
T ss_pred ecccchHHHHHHH-hhh-cc--------------hhHHhhcccceeccccCcccccCCCcceEecC------------CC
Confidence 6999999999987 321 11 134567778889 99998 888888888862 24
Q ss_pred eeeHHHHHHHhcCCc--------cccCCCCcEEecCCCCC-cccccccceEEcCCccccccCCHHHHHHHHHHhcCCHHH
Q 003304 340 EITVYDYFTQHCRIE--------LTYSAYLPCLDVGKPKR-PNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQD 410 (832)
Q Consensus 340 ~isV~eYf~~~Y~i~--------L~~~p~lP~v~vg~~~k-~~~lP~Elc~i~~~Q~~~~~l~~~q~~~mik~~~~~P~~ 410 (832)
++| ||+++|++. .+. +.+|++....+.. +.++++ ||+++ +|+++|+++|+++++.+|++
T Consensus 215 ~iS---Yyk~~~~~~q~ll~~r~~~~-~~~~~~v~~~~~~p~~lL~p-lc~~t-------~Ltd~q~~~mik~t~~~P~~ 282 (706)
T 1yvu_A 215 ERS---THKSSKKAWEELLKNRELRE-KAFLVVLEKGYTYPATILKP-VLTYE-------NLEDEERNEVADIVRMEPGK 282 (706)
T ss_dssp HTC---SSHHHHHHHHHHHHCHHHHH-HCEEEEETTSCEEEGGGEEE-CCCCC-------------HHHHTSTTSCCHHH
T ss_pred Ccc---eEecccCcchhhhhcccccc-CCceEEeccCCCCCceeecc-ccccC-------CCCHHHHHHHHHHHccCHHH
Confidence 678 999888766 445 5665554432111 234443 66544 69999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcccccceeeEEcccceeeeeEEecCCeeeeCCcc--ccC-CCCCccccCCceeecccccce---
Q 003304 411 RMRTLTDALRSYSYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSE--DCI-PRNGRWNFNNKRFLEATRIDR--- 484 (832)
Q Consensus 411 R~~~i~~~~~~l~~~~~~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~~--~~~-~~~g~W~~~~~~f~~p~~l~~--- 484 (832)
|++.|+++++.+ ++.|++|||+|+++|++|+|||||+|.|.++.|. ... ..+|.|++.+ +|+.++.++.
T Consensus 283 R~~~i~~~~~~~----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l 357 (706)
T 1yvu_A 283 RLNLIRYILRRY----VKALRDYGWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKFLELCR-PFVKKDVLSVEII 357 (706)
T ss_dssp HHHHHHHHHHHH----HHHHHTTTEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHHHHHCC-CCCSCSEEEEEEE
T ss_pred HHHHHHHHHHHH----HHHHHHcCCEECCceeecccEEcCCceeecCCCCcceeccCCcccccccC-ceecccccccceE
Confidence 999999988764 5789999999999999999999999999965432 222 3345677665 5778888999
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhC--CCCCeEEEEEccCCC
Q 003304 485 WIVVNFSARCDTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKL--PGPPQFILCVLPERK 562 (832)
Q Consensus 485 W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vlvIlp~~~ 562 (832)
|++++.....+++.|++.|.+.|+.+||.+..|....... +.++.+++.+.+.. ..+++++|||+|+ +
T Consensus 358 W~~i~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~---------~~~~~~~~~l~~~~~~~~~~qlvlvIlp~-~ 427 (706)
T 1yvu_A 358 SVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILA---------QTREEAKEKLIPVINKIKDVDLVIVFLEE-Y 427 (706)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEEC---------SSTTHHHHHHHHHHTTTSSCSEEEEEEC---
T ss_pred EEEEecchhHHHHHHHHHHHHHHHHcCceecCCccccccc---------hhHHHHHHHHHHHhcccCCCcEEEEEECC-c
Confidence 9655432222589999999999999999998774432211 22344555554322 2468999999999 6
Q ss_pred -------CCcchHHHHHHhhcccCceeeeeccccC----ChhHHHHHHHHHHhccCCcccccccccccCCCCccCCCeEE
Q 003304 563 -------NSDIYGPWKKKSLSDFGIATQCISPTKI----NDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMI 631 (832)
Q Consensus 563 -------~~~~Y~~iK~~~~~~~gI~TQcv~~~~~----~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMi 631 (832)
+.+.|+.||++|+ +.||+||||..+++ +.|++.||++|||+||||+||.++. | ...+|||
T Consensus 428 ~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~------~--~~~~tmi 498 (706)
T 1yvu_A 428 PKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE------I--EGKVDAF 498 (706)
T ss_dssp --------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC------C--TTCCSEE
T ss_pred cccccccCccHHHHHHHHHh-cCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeecc------C--CCCceEE
Confidence 6789999999965 89999999997542 4689999999999999999999963 2 2368999
Q ss_pred EEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCCCCC
Q 003304 632 LGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKP 710 (832)
Q Consensus 632 iG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P 710 (832)
||+||+|++.+. ..||++|+|||+|. ..+++|.+....|. ++|++++ ++..+|+.| +++++.+|
T Consensus 499 IGiDVsH~~~~~-~~pSv~g~vas~d~~g~~~~~~~~~~~q~-~~ei~~~------------l~~~~l~~~-~~~~~~~P 563 (706)
T 1yvu_A 499 VGIDISRITRDG-KTVNAVAFTKIFNSKGELVRYYLTSYPAF-GEKLTEK------------AIGDVFSLL-EKLGFKKG 563 (706)
T ss_dssp EEECEEECCCSS-SCCCEEEEEEEECTTSCEEEEEEEEECSC-TTHHHHH------------HHHHHHHHH-HHTTCCTT
T ss_pred EEEEEeccCCCC-CCceEEEEEEEEcCCCCEEEEEEEecccc-cchHHHH------------HHHHHHHHH-HHhcCCCC
Confidence 999999997543 35899999999984 13567777665443 6777654 455566665 45567999
Q ss_pred cEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecCCCCCCCCCceeeecccccCCcce
Q 003304 711 KQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYD 790 (832)
Q Consensus 711 ~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~It~p~~~d 790 (832)
+||||||||||| ++|+++|++||.+ |.|++|||+|+||||+|||+.+ ||+||||||. ..+|
T Consensus 564 ~rIIiyRDGVse-------~~El~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~~---np~pGTvVD~-----~~~~ 624 (706)
T 1yvu_A 564 SKIVVHRDGRLY-------RDEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSNE---KFIKGYFYKL-----SEDS 624 (706)
T ss_dssp CEEEEEESSCCC-------HHHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECSC---SCCTTEEEEB-----SSSE
T ss_pred cEEEEEeCCCCc-------HHHHHHHHHHHHH----cCCcEEEEEEEeccCeeEECCC---CCCCeEEEEc-----CCCe
Confidence 999999999999 7899999999987 4799999999999999999974 7999999994 4588
Q ss_pred EEEeeecC-CccccCCCeEEEEecCCCCChHHHHHHHHhcccC
Q 003304 791 FYMCAHAG-MIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 791 FyL~Sh~~-~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
|||++|.+ +|||+||+||+|+++|. ++|+||+|||+|||+
T Consensus 625 ffL~ss~~~~qGT~rPthY~vv~~D~--~~d~Lq~lty~Lc~l 665 (706)
T 1yvu_A 625 VILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLM 665 (706)
T ss_dssp EEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGG
T ss_pred EEEEecCCccCCCCCCEEEEEEeCCC--CHHHHHHHHHHHHHh
Confidence 88887766 99999999999555544 999999999999996
No 4
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=2.4e-81 Score=735.20 Aligned_cols=631 Identities=13% Similarity=0.100 Sum_probs=444.7
Q ss_pred EEEEEEEEEEEEec-cCCeEEEEEEEEeecCCcccccCchhhHHHHHHHHHHhhhhhcCCceEEeCCcc--eeecCCCCC
Q 003304 47 RISLLTNHFKVSVN-TTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGKRFAYDGEKS--LYTVGPLPQ 123 (832)
Q Consensus 47 ~i~l~tN~f~i~~~-~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~~~~~~~~~~yDG~~~--lyS~~~L~~ 123 (832)
++.|.+|||+|... .|+ .+|||+|++ +|+++.+ .+..++..+.+. .| ..+|||. . ||++++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~----~p~~~~~-~~~~~~~~~~~~-----~g-~~~fdg~-~~~l~~~~~l~~ 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFN----DPEEELQ-KEGYSIYRLAYE-----NV-GIVIDPE-NLIIATTKELEY 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-----------------CCHHHHHHH-----TT-EEEEETT-TTEEEESSCCCC
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeec----CChHHHH-HHHHHHHHHHhh-----cC-cEEecCc-ceeeeccceecc
Confidence 57899999999852 456 799999999 4566544 444556555433 24 7899997 6 999999972
Q ss_pred CceEEEEEeccchhcccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEecccChHHHHHHHcCCCCCchhHHHHHHHHH
Q 003304 124 NKFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDNTQDALRVLDIV 203 (832)
Q Consensus 124 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~l~~l~~~l~g~~~~~~~~~iq~lnii 203 (832)
+ +..+.|+++.+++++ +|++|++
T Consensus 70 ~--------------------------------------~~~~~~~~~~~~~~~-------------------~~~~n~i 92 (771)
T 1u04_A 70 E--------------------------------------GEFIPEGEISFSELR-------------------NDYQSKL 92 (771)
T ss_dssp S--------------------------------------SCCEEEEEECGGGSC-------------------HHHHHHH
T ss_pred C--------------------------------------CCeEEEEEEEcceec-------------------HHHHHHH
Confidence 1 234778888887764 7889999
Q ss_pred HhccccccC-----ceecccccccCCCCCeeecCCCEEeeecceEEEEeeCCeeeEeeeeeeeeeeccccHHHHHHHhcC
Q 003304 204 LRQQAANWG-----CLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKPGPVIDFLIANQN 278 (832)
Q Consensus 204 lr~~~~~~~-----~~~~g~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDv~~~~F~~~~~l~d~l~~~~~ 278 (832)
+|+.+...+ +..+||+||++ ..+ +.+++|+|+.+||+..+++++|++|++|++ .+.+||+|+|.+..+
T Consensus 93 ~r~~l~~~~~~~~~l~~~~r~~~~~-----~~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~~~~ 165 (771)
T 1u04_A 93 VLRLLKENGIGEYELSKLLRKFRKP-----KTF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDPK 165 (771)
T ss_dssp HHHHHHHTTCSHHHHHHHHTTTSCC-----EEE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCHH
T ss_pred HHHHHHHcccchHHHHHHhhhcCCC-----ccc-cccEEEECceeeEEecCCceEEEEEeeeeE-eehhHHHHHHHHHHH
Confidence 999988776 67889999986 122 578999999999999999999999999998 799999999964320
Q ss_pred CCCCCcccHHHHHhhhcCcEEEee--------c--cCceEEEeecCCCCCCcc--cc---cccccCCCCCCCCCceeeeH
Q 003304 279 VREPRFIDWTKAKKMLRNLRVKPR--------H--RNMEFKIVGLSEKPCNQQ--FF---PMKVKSTEGTNEGETLEITV 343 (832)
Q Consensus 279 ~~~~~~~~~~~i~~~Lkgl~V~~~--------~--~~r~~~I~~l~~~~a~~~--~F---~~~~~~~~g~~~~~g~~isV 343 (832)
..+.......|..|.+. | ++++|++++ ..+..+.+ +| +.++ |+ .++++
T Consensus 166 -------~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~----~~-----~~~~~ 228 (771)
T 1u04_A 166 -------ELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIER----YW-----NTPEA 228 (771)
T ss_dssp -------HHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHH----HC-----CSHHH
T ss_pred -------HHHHHHHhccCcEEeeeccccceeEeecccceeecCC-ccccCCCChhheeceeecC----CC-----CCcch
Confidence 22344556677776666 6 667777765 44333443 45 4321 00 25677
Q ss_pred HHHHHHhcCCccccCCCCcEEecCCC-------CCcccccccceEEcCCccccccCCHHHHHHHHHHhcCCHHHHHHHHH
Q 003304 344 YDYFTQHCRIELTYSAYLPCLDVGKP-------KRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLT 416 (832)
Q Consensus 344 ~eYf~~~Y~i~L~~~p~lP~v~vg~~-------~k~~~lP~Elc~i~~~Q~~~~~l~~~q~~~mik~~~~~P~~R~~~i~ 416 (832)
.+||.++|++ ++ ++||++....+ .+.+||.||||.++|. ..+++....++|..+++..|++|.+.|.
T Consensus 229 ~~~y~~~y~i--~d-~~QPllvs~~~~~~~~~~~~~i~LiPELc~~TG~---~~~~~~~~MK~la~~trl~P~~R~~~l~ 302 (771)
T 1u04_A 229 KLEFYRKFGQ--VD-LKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYN---AEQLESDVAKEILEYTKLMPEERKELLE 302 (771)
T ss_dssp HHHHHHHHCS--CC-TTSCEEEEEESCC-----CCCEEECTTTEEEEEE---GGGC----CCHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHhcCc--Cc-CCCCeEEecchhhccCCCCceeeechHhhhhcCc---hhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777799995 87 99999987431 2469999999999982 3344455567899999999999999999
Q ss_pred HHHHhc-----cCC--CcccccceeeEEcccceeeeeEEecCCeeeeCCccccCCCCCccc--cCCceeeccc-------
Q 003304 417 DALRSY-----SYD--EDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSEDCIPRNGRWN--FNNKRFLEAT------- 480 (832)
Q Consensus 417 ~~~~~l-----~~~--~~~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~~~~~~~~g~W~--~~~~~f~~p~------- 480 (832)
++++++ ..+ ..+.|+.|| .++.. +.|.++++.+-.+.+++ ...+..++|. +++.+++.+.
T Consensus 303 ~~~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~--~~~~~~adW~~~~~~~~~~~~~~~p~~l~ 378 (771)
T 1u04_A 303 NILAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLN--VQKSQLLLWTNYSRKYPVILPYEVPEKFR 378 (771)
T ss_dssp HHHHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC----------CGGGGSCCCCCCCCSBCCTHHH
T ss_pred HHHHHhhhhhhcCCHHHHHHHhhhh-ccCcC-cccccccccccceeecC--cCCCccCCcchhhCCCcceecccchhhhh
Confidence 999998 332 346777788 47755 67665555443454443 1224568995 5666665443
Q ss_pred ---ccceEEEEEeCCCccHHHHH---------HHHHHHhhhcCcc---------cCCCc------eeeeccccccCCChh
Q 003304 481 ---RIDRWIVVNFSARCDTSHIS---------RELINCGRNKGIH---------IERPF------TLIEEDQQTRRGNPV 533 (832)
Q Consensus 481 ---~l~~W~vv~~~~~~~~~~f~---------~~L~~~~~~~G~~---------i~~p~------~~~~~~~~~~~~~~~ 533 (832)
.++.|++++......+.+|+ +.|.+.++.+|+. +.-|. +...... ....
T Consensus 379 ~~~~i~~wil~~~~~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~d----l~~~ 454 (771)
T 1u04_A 379 KIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITED----LNSD 454 (771)
T ss_dssp HCCCCCEEEEEETTSCHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEEC----TTSH
T ss_pred cccccceEEEEeCCchHHHHHHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCcccccCcceeccc----ccch
Confidence 34457777554433677777 4454544333332 33332 1111100 1112
Q ss_pred HHHHHHHHHHHhhC-CCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccccC-------C-----hhHHHHHHH
Q 003304 534 VRVERMFELITEKL-PGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTKI-------N-----DQYLTNVLL 600 (832)
Q Consensus 534 ~~~~~~~~~~~~~~-~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~-------~-----~q~~~ni~l 600 (832)
+.++.+++.+.+.. +..++|++|+++..++.+.|+.||+.| .+.||+||||..+++ + .+++.||++
T Consensus 455 ~~i~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIal 533 (771)
T 1u04_A 455 KGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLF 533 (771)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHH
Confidence 46677777776543 245799877775425678999999998 689999999997543 1 567999999
Q ss_pred HHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecCCccceeeEEEEEccCCceeecc
Q 003304 601 KINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDA 680 (832)
Q Consensus 601 KiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~~~~~~y~~~~~~Q~~~~E~i~~ 680 (832)
|||+||||+||.++. |. .++||||+||+|++++. ..++++|+|+|.|+ ...+|.+....|.++ |.++
T Consensus 534 qIn~KLGG~pW~L~~------p~---~~tmiIGiDV~H~~~~~-~svs~~A~V~s~dg-~~~~~~s~~~~~~~~-E~i~- 600 (771)
T 1u04_A 534 QVLSKLGVKYYVLDY------RF---NYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQG-YIRKIVPIKIGEQRG-ESVD- 600 (771)
T ss_dssp HHHHHTTCBCCEESC------CC---SSSEEEEEEEEEECCTT-TCEEEEEEEEETTS-CEEEEEEEECCCCSS-SSCC-
T ss_pred HHHHHhCCcceeecC------CC---CCEEEEEEEEEcCCCCC-CceEEEEEEECCCC-CEEEEEEEEeecCCc-cEEc-
Confidence 999999999999852 32 68999999999986543 45788888888885 667777655445544 4443
Q ss_pred ccccccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeecc
Q 003304 681 LYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNH 760 (832)
Q Consensus 681 l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh 760 (832)
+ +.|+.++|.+|++.+++.+|+||||||||+ |+++|+++|++||.++ .|++|||+|+|||
T Consensus 601 l---------~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh 660 (771)
T 1u04_A 601 M---------NEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNH 660 (771)
T ss_dssp H---------HHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCC
T ss_pred H---------HHHHHHHHHHHHHHhCCCCCCEEEEEcCCC-------CCHHHHHHHHHHHHhc----CCCEEEEEEEecC
Confidence 3 359999999998775678999999999997 7789999999999864 4899999999999
Q ss_pred ceeeecCCCCCCCCCceeeecccccCCcceEEEeeec--CCccccCCCeE--EEEecCCCCC----hHHHHHHHHhcccC
Q 003304 761 HTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHA--GMIGTSRPAHY--HVLLDEIGFS----PDDLQNLIHSLSYV 832 (832)
Q Consensus 761 ~~Rff~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~--~~qGTarPt~Y--~Vl~d~~~~~----~d~lq~lt~~LCy~ 832 (832)
|+|||. |.+|||||| . ||||+||. +.|||++|+|| +|++|+++++ +|+||++||+|||+
T Consensus 661 ~tRfF~-----~~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchl 727 (771)
T 1u04_A 661 PVRAFA-----NMKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRL 727 (771)
T ss_dssp CCCBSS-----CSCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTC
T ss_pred ceeeec-----CCCCeeEEe-------C-CEEEEeccccCCCCCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhh
Confidence 999993 357999993 3 99999996 55999999999 9999999999 99999999999996
No 5
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=3.9e-81 Score=701.48 Aligned_cols=340 Identities=29% Similarity=0.481 Sum_probs=244.7
Q ss_pred cCCceeec-ccccceEEEEEeCCC---ccHHHHHHHHHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhh
Q 003304 471 FNNKRFLE-ATRIDRWIVVNFSAR---CDTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEK 546 (832)
Q Consensus 471 ~~~~~f~~-p~~l~~W~vv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (832)
+++++|++ ++++++|+++++... .+++.|++.|.+.|+.+||.+..|........ ..+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~--~~~~~~~~ 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMS---VPGSEKEF--FAKVKELM 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEE---CCSSHHHH--HHHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecC---CCchHHHH--HHHHhhcc
Confidence 45678999 689999999999532 37999999999999999999988752111000 01112222 22333221
Q ss_pred CCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc---cCChh--HHHHHHHHHHhccCCcccccccccccCC
Q 003304 547 LPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT---KINDQ--YLTNVLLKINSKLGGINSLLALEQSSLI 621 (832)
Q Consensus 547 ~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~---~~~~q--~~~ni~lKiN~KlGG~n~~~~~~~~~~~ 621 (832)
.+++|+|||+|+ ++.++|+.||++||++.||+||||..+ +.++| +++||+||||+||||+||.++. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~----~~ 149 (437)
T 2yhb_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (437)
T ss_dssp --HTCSEEEEEESS-CCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS----CC
T ss_pred --CCCcEEEEEECC-CChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceeccc----cc
Confidence 258999999998 777899999999999999999999975 45778 9999999999999999999964 34
Q ss_pred CCccCCCeEEEEEEeeeCC---CC--CCCCCeEEEEEEeecCCccceeeEEEEEcc-CCceeeccccccccCCChHHHHH
Q 003304 622 PLIKDTPTMILGMDVSHGS---PG--RSDIPSVAAVVGSQSWPLISRYRAAVRTQS-SKVEMIDALYKPIANGNDDGIIR 695 (832)
Q Consensus 622 p~~~~~~tMiiG~DV~H~~---~~--~~~~pSi~avVaS~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~~~ 695 (832)
|++.+.+|||||+||+||+ || ....||+||+|||+|. .+++|.+.+++|. +++|++++| ++|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l---------~~~~~ 219 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQF---------TDKFK 219 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHH---------HHHHH
T ss_pred cccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecCC-CcCeeeeEEEEcCCcchhHHHHH---------HHHHH
Confidence 5556689999999999998 76 3357999999999995 8999999999999 999999986 46999
Q ss_pred HHHHHHHH--HhCCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCC-CCcEEEEEEeeccceeeecCCC---
Q 003304 696 ELLLDFYR--TSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEAD-IPKFTVIVAQKNHHTKLFQASG--- 769 (832)
Q Consensus 696 ~~l~~f~~--~~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~-~pkit~Ivv~Krh~~Rff~~~~--- 769 (832)
++|+.|++ .+++.+|++|||||||||||||.+|+++|+++|++||.+++.+| +|+||||||+||||+|||+.+.
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~ 299 (437)
T 2yhb_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI 299 (437)
T ss_dssp HHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCcccc
Confidence 99999876 25679999999999999999999999999999999999998887 8999999999999999999643
Q ss_pred ---CCCCCCceeeecccccCCcceEEEeeecCCccccCCCeEEEEecCC------CCChHHHHHHHHhcccC
Q 003304 770 ---PENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEI------GFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 770 ---~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~------~~~~d~lq~lt~~LCy~ 832 (832)
.+||+||||||++||+|..+|||||||.++|||||||||+||+||+ ++++|+||+|||+|||+
T Consensus 300 ~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~ 371 (437)
T 2yhb_A 300 HFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYL 371 (437)
T ss_dssp ----------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC
T ss_pred ccccCCCCCceEecccccCCCCceEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHh
Confidence 4699999999999999999999999999999999999999999998 99999999999999996
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=1.8e-69 Score=624.01 Aligned_cols=612 Identities=15% Similarity=0.161 Sum_probs=433.1
Q ss_pred EEEEEEEEEEEE-eccCCeEEEEEEEEeecCCcccccCchhhHHHHHHHHHHhhhhhcCCceEEeCCcceeecCCCCCC-
Q 003304 47 RISLLTNHFKVS-VNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGKRFAYDGEKSLYTVGPLPQN- 124 (832)
Q Consensus 47 ~i~l~tN~f~i~-~~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~~~~~~~~~~yDG~~~lyS~~~L~~~- 124 (832)
.+.|.-|-|.++ +...+.+.|.|.|.+.|..+ ++--..++.+++... |...+==| +.|.|-.+ |..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~-~~~~ 73 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPG-----REEVYPLLAQVARRA-----GGVTVRMG-DGLASWSP-PEVL 73 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCC-----TTTHHHHHHHHHHHT-----CSSEEEET-TEEEESSC-TTTS
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCC-----cchHHHHHHHHHHHh-----CCeEEeec-CceecccC-chhh
Confidence 467899999987 44567889999999965321 222344566665542 23323333 36666555 321
Q ss_pred ceEEEEEeccchhcccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEecccChHHHHHHHcCCCCCchhHHHH-----H
Q 003304 125 KFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDNTQDALR-----V 199 (832)
Q Consensus 125 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~l~~l~~~l~g~~~~~~~~~iq-----~ 199 (832)
..|-+|- +.++...|.+.-.-...++..+-. .+++|. .
T Consensus 74 ~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 116 (685)
T 3ho1_A 74 VLEGTLA---------------------------RMGQTYAYRLYPKGRRPLDPKDPG----------ERSVLSALARRL 116 (685)
T ss_dssp CCEEEEE---------------------------CSSCEEEEEEEEEEECCCCTTSHH----------HHHHHHHHHHHH
T ss_pred hccchhc---------------------------cccCCcceeeeecccccCCCCChH----------HHHHHHHHHHHH
Confidence 1122221 112345577766666666653211 123332 3
Q ss_pred HHHHHhccccccCceecccccccCCCCCeeecCCCEEeeecceEEEEeeC-CeeeEeeeeeeeeeeccccHHHHHHHhcC
Q 003304 200 LDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQ-GGLSLNMDVSTTMILKPGPVIDFLIANQN 278 (832)
Q Consensus 200 lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~-~~l~LniDv~~~~F~~~~~l~d~l~~~~~ 278 (832)
|+-.|++. .++..-|.-.+..+ + . -|.|.|+++|+...|.+.. |+++|.||+.|. |+++.++.+++.+...
T Consensus 117 ~~~~~~~~---~~~~~~~~~~~~~~-~--~-~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~~ 188 (685)
T 3ho1_A 117 LQERLRRL---EGVWVEGLAVYRRE-H--A-RGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGHP 188 (685)
T ss_dssp HHHHHHTC---SSSEEETTEEEEEE-E--E-EETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSCC
T ss_pred HHHHHHhh---hceEEccEEEEeec-C--C-CCCceEEecceEEEEEECCCCcEEEEEeehee-ecChhhHHHHHHhCCC
Confidence 34444444 12222233333221 1 2 2789999999999999997 999999999998 5899999999986321
Q ss_pred CCCCCcccHHHHHhhhcCcEEEeeccCceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeHHHHHHHhcCCccccC
Q 003304 279 VREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYS 358 (832)
Q Consensus 279 ~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV~eYf~~~Y~i~L~~~ 358 (832)
|. ..|.++|+.++|.|.+|+. ..+++.|-. ..+|++|||+++|.+ +.
T Consensus 189 ---------------~~-~~v~~~y~~~~~~~~~~~~-~~p~~~~l~-------------~~~s~~~y~~~k~~~--~~- 235 (685)
T 3ho1_A 189 ---------------LP-KRVRNAYDRRTWELLRLGE-EDPKELPLP-------------GGLSLLDYHASKGRL--QG- 235 (685)
T ss_dssp ---------------CC-SEEEESSSCCEECCCEEEC-CCTTCC-------------------CSTTTTTTTSTT--TT-
T ss_pred ---------------cc-HHHhhhcccceEEEeeccc-CCchheecC-------------CCccHHHHHhhcccc--cc-
Confidence 34 6999999999999999984 566666642 269999999999887 77
Q ss_pred CCCcEEec-CCC---CC-----cccccccceEEcCCccccccCCHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCccc
Q 003304 359 AYLPCLDV-GKP---KR-----PNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDALRSYSYDEDPV 429 (832)
Q Consensus 359 p~lP~v~v-g~~---~k-----~~~lP~Elc~i~~~Q~~~~~l~~~q~~~mik~~~~~P~~R~~~i~~~~~~l~~~~~~~ 429 (832)
-++|.|.. .+. .+ ..+|-|||| +++ |++.+.+ .+++.+|++|++.+.++.+. +
T Consensus 236 ~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~~-------l~~~~~~---~~trlsP~~R~~~l~~~~~~-------i 297 (685)
T 3ho1_A 236 REGGRVAWVADPKDPRKPIPHLTGLLVPVLT-LED-------LHEEEGS---LALSLPWEERRRRTREIASW-------I 297 (685)
T ss_dssp SCCCSEEEECSCC---CCEEEETTSEEEECC-TTT-------TSSCSSC---CCCCCCHHHHHHHHHHHHHH-------H
T ss_pred cCCceEEEEeccccCCCcceeeeeeechHhH-HHH-------Hhhhhhh---ccccCCHHHHHHHHHHHHHH-------H
Confidence 88887754 321 12 369999999 554 4554433 57889999999999988765 3
Q ss_pred ccceeeEEcccceeeeeEEecCCeeeeCCccccCCCCCccccCCceeecccccceEEEEEeCCC-ccHHHHHHHHHHHhh
Q 003304 430 LAACGISIGKQLTQVDGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSAR-CDTSHISRELINCGR 508 (832)
Q Consensus 430 l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~~p~~l~~W~vv~~~~~-~~~~~f~~~L~~~~~ 508 (832)
++.|||+ +++|++++||+||||+| +|+.. + .+.|++.+.+|+.++.. .|+++++++. ..+..|++.|.+.|+
T Consensus 298 ~~~~Gl~-~~~~i~v~gRvLppp~I-~g~~~-~---~~~~d~~~~~~~~~~~~-~~ail~l~~~~~~~~~f~~~L~~va~ 370 (685)
T 3ho1_A 298 GRRLGLG-TPEAVRAQAYRLSIPKL-MGRRA-V---SKPADALRVGFYRAQET-ALALLRLDGAQGWPEFLRRALLRAFG 370 (685)
T ss_dssp HHTTCSC-CCEEEEEEEEECCCCCE-ESSSB-C---SSGGGHHHHCCSSCCCE-EEEEEECSSCCSCCHHHHHHHHHHHH
T ss_pred HHhcCCC-CCCcceEEEEEcCHHHh-cCCCC-c---CCchhhccCcceeccCc-eEEEEeccCchHHHHHHHHHHHHHHH
Confidence 6789998 99999999999999999 77542 2 24566666677777665 7999988764 368899999999999
Q ss_pred hcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-
Q 003304 509 NKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP- 587 (832)
Q Consensus 509 ~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~- 587 (832)
.+||+|..|..... ++. ...+...+++..+ .++|+||||+|+ ++.+.|+.||++| .+.||+||||..
T Consensus 371 ~~G~~i~~~~~~~~--~~d-----~~~~~~~l~~~~~---~~~qlvvvIlp~-~~~~~y~~IKk~~-~~~GIpTQcV~~t 438 (685)
T 3ho1_A 371 ASGASLRLHTLHAH--PSQ-----GLAFREALRKAKE---EGVQAVLVLTPP-MAWEDRNRLKALL-LREGLPSQILNVP 438 (685)
T ss_dssp SSSSCEEEEECCCC--GGG-----THHHHHHHHHHHH---TTCCEEEEEESC-CCHHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred hCCcEeccceeecC--CCc-----hHHHHHHHHHhhh---cCCCEEEEEECC-CCccHHHHHHHHH-hcCCCccEEEecc
Confidence 99999986432211 110 1123334444443 358999999999 7778899999976 799999999992
Q ss_pred -ccCChhHHHHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-Cccceee
Q 003304 588 -TKINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYR 665 (832)
Q Consensus 588 -~~~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~ 665 (832)
.+.+.++++||++|||+||||+||.++. |. .++||||+||+|++. .++++++++++. ....+|.
T Consensus 439 l~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~---~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~~ 504 (685)
T 3ho1_A 439 LREEERHRWENALLGLLAKAGLQVVALSG------AY---PAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLLWT 504 (685)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTCCCCEECS------CC---SCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCEEE
T ss_pred cccccHhHHHHHHHHHHHHhCCeeEEecC------CC---CCeEEEEEEEEcCCC-----CccceEEEEEECCCCEEEeE
Confidence 2345678999999999999999999953 32 689999999999862 255555555443 1344443
Q ss_pred EEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCC-CchhHHHHHHHHHHHHHHHHHHhC
Q 003304 666 AAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGV-SESQFNQVLNIELEQIIKAYQHLG 744 (832)
Q Consensus 666 ~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGV-segq~~~V~~~Ev~~i~~a~~~~~ 744 (832)
..+.|.+.++.+++| .+|+.++|..|++. ++.+|+||||||||| ||+|++ +|++||+++
T Consensus 505 -~~~~Q~~e~l~~~~L---------~~~l~eaL~~Y~k~-ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~- 564 (685)
T 3ho1_A 505 -LPEAQAGERIPQEVV---------WDLLEETLWAFRRK-AGRLPSRVLLLRNGRVPQDEFA--------LALEALARE- 564 (685)
T ss_dssp -CCCCCCSCCCHHHHH---------HHHHHHHHHHHHHH-HSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHT-
T ss_pred -EEEccCCcEecHHHH---------HHHHHHHHHHHHHH-hCCCCcEEEEEeCCCCCHHHHH--------HHHHHHHhc-
Confidence 234554433333454 46999999999876 469999999999999 898765 456788865
Q ss_pred CCCCCcEEEEEEeeccceeeecCCCCCCCCCceeeecccccCCcceEEEeee--cCCccccCCCeEEEEecCCCCChHHH
Q 003304 745 EADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAH--AGMIGTSRPAHYHVLLDEIGFSPDDL 822 (832)
Q Consensus 745 ~~~~pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh--~~~qGTarPt~Y~Vl~d~~~~~~d~l 822 (832)
.+++|||+|+||||+|||+.+ .+|.+||+|+. . +||||++| .+.|||++|+||+ +|++++++|+|
T Consensus 565 ---~~~~t~IvVqKRh~tRfF~~n--~pp~~Gt~v~~-----e-~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~L 631 (685)
T 3ho1_A 565 ---GIAYDLVSVRKSGGGRVYPVQ--GRLADGLYVPL-----E-DKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEAL 631 (685)
T ss_dssp ---TCEEEEEEEESSCCCCEEESS--SCCCSSEEEEC-----S-TTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHH
T ss_pred ---CCCEEEEEEEecCCceEecCC--CCCCCeEEEeC-----C-CCEEEEEecCCCCccCCceEEEE--ECCCCCCHHHH
Confidence 378999999999999999976 46777887753 2 55555554 4689999999998 99999999999
Q ss_pred HHHHHhcccC
Q 003304 823 QNLIHSLSYV 832 (832)
Q Consensus 823 q~lt~~LCy~ 832 (832)
|++||+|||+
T Consensus 632 Q~ltY~Lchm 641 (685)
T 3ho1_A 632 AHQIFHLTRL 641 (685)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHHh
Confidence 9999999996
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=8.7e-64 Score=554.08 Aligned_cols=297 Identities=28% Similarity=0.446 Sum_probs=245.1
Q ss_pred cCCceeec-ccccceEEEEEeCCC---ccHHHHHHHHHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhh
Q 003304 471 FNNKRFLE-ATRIDRWIVVNFSAR---CDTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEK 546 (832)
Q Consensus 471 ~~~~~f~~-p~~l~~W~vv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (832)
+++++|++ ++++++|+++++... .++++|++.|.+.|+.+||.+..|........ ..+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~--~~~~~~~~ 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMS---VPGSEKEF--FAKVKELM 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEE---CCSSHHHH--HHHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecC---CCchHHHh--HHHHhhcc
Confidence 46778999 689999999999542 37999999999999999999988752111000 11112222 22333221
Q ss_pred CCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc---cCChh--HHHHHHHHHHhccCCcccccccccccCC
Q 003304 547 LPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT---KINDQ--YLTNVLLKINSKLGGINSLLALEQSSLI 621 (832)
Q Consensus 547 ~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~---~~~~q--~~~ni~lKiN~KlGG~n~~~~~~~~~~~ 621 (832)
.+++|+|||+|+ ++.+.|+.||++||++.||+||||..+ +.++| +++||+||||+||||+||.+++ .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~----~~ 149 (388)
T 2yha_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (388)
T ss_dssp --HTCSEEEEEESS-SCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS----CC
T ss_pred --CCCeEEEEEECC-CChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceeccc----cc
Confidence 258999999998 777899999999999999999999975 45778 9999999999999999999964 24
Q ss_pred CCccCCCeEEEEEEeeeCC---CC--CCCCCeEEEEEEeecCCccceeeEEEEEcc-CCceeeccccccccCCChHHHHH
Q 003304 622 PLIKDTPTMILGMDVSHGS---PG--RSDIPSVAAVVGSQSWPLISRYRAAVRTQS-SKVEMIDALYKPIANGNDDGIIR 695 (832)
Q Consensus 622 p~~~~~~tMiiG~DV~H~~---~~--~~~~pSi~avVaS~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~~~ 695 (832)
|++.+.+|||||+||+||+ || ....||+||+|||+|. .+++|.+.+++|. +++|++++| ++|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l---------~~~~~ 219 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQF---------TDKFK 219 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHH---------HHHHH
T ss_pred cccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcCC-CCCEEEEEEEEcCCCcccHHHHH---------HHHHH
Confidence 5556689999999999998 77 3357999999999995 8999999999999 999999986 46999
Q ss_pred HHHHHHHH--HhCCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCC-CCcEEEEEEeeccceeeecCCCCCC
Q 003304 696 ELLLDFYR--TSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEAD-IPKFTVIVAQKNHHTKLFQASGPEN 772 (832)
Q Consensus 696 ~~l~~f~~--~~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~-~pkit~Ivv~Krh~~Rff~~~~~~N 772 (832)
++|+.|++ .+++.+|+||||||||||||||.+|+++|+++|++||.+++.+| +|+||||||+||
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr------------- 286 (388)
T 2yha_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG------------- 286 (388)
T ss_dssp HHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHHhhhhcCCCCceEEEEecCcChhHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEeccc-------------
Confidence 99999876 35679999999999999999999999999999999999998887 899999999999
Q ss_pred CCCceeeecccccCCcceEEEeeecCCccccCCCeEEEEecCC------CCChHHHHHHHHhcccC
Q 003304 773 VPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEI------GFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 773 ~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~------~~~~d~lq~lt~~LCy~ 832 (832)
||||||+||+||+ ++++|+||+|||+|||+
T Consensus 287 ------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~ 322 (388)
T 2yha_A 287 ------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYL 322 (388)
T ss_dssp ----------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC
T ss_pred ------------------------------cCCceEEEEeCCccccccCCCCHHHHHHHHHHHHHH
Confidence 9999999999998 99999999999999996
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=9.7e-45 Score=406.94 Aligned_cols=330 Identities=14% Similarity=0.101 Sum_probs=217.3
Q ss_pred EecCCeeeeC--CccccCCC-CC-cc-ccCCceeeccccc--ceEEEEEeCCCccHHHHHHHHHHHhh---hcCcccCCC
Q 003304 448 ILEIPKLKVG--KSEDCIPR-NG-RW-NFNNKRFLEATRI--DRWIVVNFSARCDTSHISRELINCGR---NKGIHIERP 517 (832)
Q Consensus 448 vL~~P~i~~g--~~~~~~~~-~g-~W-~~~~~~f~~p~~l--~~W~vv~~~~~~~~~~f~~~L~~~~~---~~G~~i~~p 517 (832)
-|..|.+.|+ +|+.++.. .+ -+ .+.+...+..... .+|+||+..+..+ |++.|.+... ..++.+..+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~gl~~~gpy~~~~~~~~~w~vI~~~~~~~---~l~~l~~~~~~~~g~~f~~~~~ 81 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKGLRNYGPYEVPSLKYNQIALIHNNQFSS---LINQLKSQISSKIDEVWHIHNI 81 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHHHHHHCCSBCCCCSSSEEEEEESCTTCH---HHHHHHHHHHHHHHHTTCCCSC
T ss_pred ccCCCcceeeccCCCcccccccCCHHHHHHhcCCCccCCCCCCEEEEEECcccHH---HHHHHHHhhhhcCCCceeecCC
Confidence 3566778887 55442211 01 00 0222233443333 6999998765433 6666655432 245555444
Q ss_pred ceeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEEEc--------cCCCCCcchHHHHHHhhcccCceeeeecccc
Q 003304 518 FTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVL--------PERKNSDIYGPWKKKSLSDFGIATQCISPTK 589 (832)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIl--------p~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~ 589 (832)
... ...+. +.++ +.+++ +++++|||+ |+ ++.+.|. +|+ ++.+.|||||||..++
T Consensus 82 ~~~---~~~y~-----~~i~---~~l~~----~~~lvlvilp~~~~~~~~~-~~~~~y~-~K~-~~~~~gvptQ~I~~~t 143 (427)
T 2w42_A 82 NIS---EFIYD-----SPHF---DSIKS----QVDNAIDTGVDGIMLVLPE-YNTPLYY-KLK-SYLINSIPSQFMRYDI 143 (427)
T ss_dssp EEE---EEECS-----SSSH---HHHHH----HHHHHHHHCCSEEEEEESS-CCHHHHH-HHH-HHHHTTSCEEEEEGGG
T ss_pred cCC---hHHHH-----HHHH---HHhcC----CCCEEEEEEEccccccCCC-CCcchHH-HHH-HHhCCCcCcEEEEhhh
Confidence 311 00111 1122 22332 368999999 55 4444554 775 6689999999999876
Q ss_pred C---Chh-HHHHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecCCccceee
Q 003304 590 I---NDQ-YLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYR 665 (832)
Q Consensus 590 ~---~~q-~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~~~~~~y~ 665 (832)
+ +.+ ++.||++|||+||||+||.++.. .|. .++||||+||+|++++ +++|++.+.|. ....+.
T Consensus 144 l~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~~-~g~~~~ 210 (427)
T 2w42_A 144 LSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFKK-DGTMLW 210 (427)
T ss_dssp CCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEECT-TSCEEE
T ss_pred cccccchhHHHHHHHHHHHHhCCcceecccC----CCC---CCeEEEEEEEEEcCCC-----cEEEEEEEEcC-CCCEEE
Confidence 4 333 48899999999999999999641 122 5799999999998764 56766444443 233344
Q ss_pred EEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCCCCCc--EEEEEecCCCchhHHHHHHHHHHHHHHHHHHh
Q 003304 666 AAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPK--QIIIFRDGVSESQFNQVLNIELEQIIKAYQHL 743 (832)
Q Consensus 666 ~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~--~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~ 743 (832)
..+..|.+++|++++|. .++.++|..|++..++.+|+ ||||| ||+..|.++|+++|++||.++
T Consensus 211 ~~~~~~~~~~E~~~~l~---------~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~~~ 275 (427)
T 2w42_A 211 NEISPIVTSSEYLTYLK---------STIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVEEL 275 (427)
T ss_dssp EEECCCEEGGGHHHHHH---------HHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHHHH
T ss_pred EEEEecCChhHHHHHHH---------HHHHHHHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHHHHHHh
Confidence 44445556788888864 69999999987614568888 66887 889999999999999999998
Q ss_pred CC----CCCCcEEEEEEeeccc-eeeecCCCCCCCCCceeeecccccCCcceEEEeeecCCcc------c---cCCCeEE
Q 003304 744 GE----ADIPKFTVIVAQKNHH-TKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIG------T---SRPAHYH 809 (832)
Q Consensus 744 ~~----~~~pkit~Ivv~Krh~-~Rff~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qG------T---arPt~Y~ 809 (832)
+. +|+|+||||+|+|||| +|||..+..+||+||||||.+ ++|||++|.+.|+ + ++||||+
T Consensus 276 ~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~~~~~~~~~Pt~y~ 349 (427)
T 2w42_A 276 KKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLS------SKRYLLTLLQPYLKRNGLEMVTPIKPLSVE 349 (427)
T ss_dssp HHTTSSCTTCEEEEEEEEECCCEEEEC--------CCSEEEESS------SSEEEEEEEC---------CEEEEEEEEEE
T ss_pred ccccccCCCCCEEEEEEEccccceeeecCCCCCCCCCceEEEcC------CCeEEEEEEeeeccccccccccCCCCEEEE
Confidence 64 7899999999999999 899976555799999999983 5666666666665 4 3399999
Q ss_pred EEec----CCCC-ChHHHHHHHHhcccC
Q 003304 810 VLLD----EIGF-SPDDLQNLIHSLSYV 832 (832)
Q Consensus 810 Vl~d----~~~~-~~d~lq~lt~~LCy~ 832 (832)
|++| |+++ ++|+||++||+|||+
T Consensus 350 vi~d~~~~~~~~~~~d~lq~lty~L~~~ 377 (427)
T 2w42_A 350 IVSDNWTSEEYYHNVHEILDEIYYLSKM 377 (427)
T ss_dssp EEEECCCTTTHHHHHHHHHHHHHHHHTC
T ss_pred EEecCCcCcccCCCHHHHHHHHHHhhCc
Confidence 9995 4555 489999999999996
No 9
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.93 E-value=7.8e-27 Score=222.19 Aligned_cols=130 Identities=22% Similarity=0.376 Sum_probs=91.3
Q ss_pred eccccHHHHHHHhcCC---CCCCcc--cHHHHHhhhcCcEEEeec------cCceEEEeecCCCCCCcccccccccCCCC
Q 003304 264 LKPGPVIDFLIANQNV---REPRFI--DWTKAKKMLRNLRVKPRH------RNMEFKIVGLSEKPCNQQFFPMKVKSTEG 332 (832)
Q Consensus 264 ~~~~~l~d~l~~~~~~---~~~~~~--~~~~i~~~Lkgl~V~~~~------~~r~~~I~~l~~~~a~~~~F~~~~~~~~g 332 (832)
++++||+|||.+..+. .+.... ++.+++++|+|++|.++| ++|+|+|.||++.++++++|+.+
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~------ 75 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD------ 75 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESS------
T ss_pred CCcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEcC------
Confidence 5789999999987622 111222 345689999999999999 57899999999999999999753
Q ss_pred CCCCCceeeeHHHHHHHhcCCccccCCCCcEEecCCCCCcccccccceEEcCCccccccCCHHHHHHHHHHhcC
Q 003304 333 TNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQ 406 (832)
Q Consensus 333 ~~~~~g~~isV~eYf~~~Y~i~L~~~p~lP~v~vg~~~k~~~lP~Elc~i~~~Q~~~~~l~~~q~~~mik~~~~ 406 (832)
|.++||+|||+++ |++|+| |+||||++|++.+++|||||||.|+|||+++++|++.|+++||++|+.
T Consensus 76 -----g~~isv~~Yf~~~-~~~l~~-p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~ 142 (143)
T 1vyn_A 76 -----GKKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAAT 142 (143)
T ss_dssp -----SCEEEHHHHHHHT-TCCCSS-TTSEEEEEECSSSEEEEEGGGEEECC----------------------
T ss_pred -----CCEEEHHHHHHHc-CCCCCC-CCCCeEEecCCCCCeEeccEeEEccCCccccccCCHHHHHHHHHHHhc
Confidence 3589999999988 999999 999999999988999999999999999999999999999999999986
No 10
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.92 E-value=5e-25 Score=209.03 Aligned_cols=132 Identities=30% Similarity=0.538 Sum_probs=110.6
Q ss_pred CceeecccccceEEEEEeCCC---ccHHHHHHHHHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhCCC
Q 003304 473 NKRFLEATRIDRWIVVNFSAR---CDTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPG 549 (832)
Q Consensus 473 ~~~f~~p~~l~~W~vv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (832)
+++|++|+++++|++++|+++ .++++|++.|.+.|+.+||.+.+|..+.... ...++++.+++.+.+.. .
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~------~~~~~~e~~l~~~~~~~-~ 74 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFIS------CPPEHIEEALLDIHKRA-P 74 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEE------CCGGGHHHHHHHHHHHC-T
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeec------CCchhHHHHHHHHHHhc-C
Confidence 578999999999999998532 3699999999999999999999875332110 01256788888887765 4
Q ss_pred CCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc---cCChhHHHHHHHHHHhccCCccccc
Q 003304 550 PPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT---KINDQYLTNVLLKINSKLGGINSLL 613 (832)
Q Consensus 550 ~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~---~~~~q~~~ni~lKiN~KlGG~n~~~ 613 (832)
+++|+|||+|+ ++.+ |+.||++||+++||+||||+.+ +.++||++||+||||+||||+||.+
T Consensus 75 ~~qlv~~ilp~-~~~~-Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 75 GLQLLIVILPD-VTGS-YGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp TCSEEEEECCS-SSSC-HHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCcEEEEEECC-CCCc-HHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 68999999999 6667 9999999999999999999984 4679999999999999999999864
No 11
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.91 E-value=1.9e-24 Score=207.14 Aligned_cols=138 Identities=28% Similarity=0.500 Sum_probs=109.3
Q ss_pred CceeecccccceEEEEEeCCCc---cHHHHHHHHHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhC--
Q 003304 473 NKRFLEATRIDRWIVVNFSARC---DTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKL-- 547 (832)
Q Consensus 473 ~~~f~~p~~l~~W~vv~~~~~~---~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 547 (832)
+++|++|+++++|+++++++.. .+++|++.|.+.|+.+||.+.+|..+..... .....+..++..++++.+.+
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~ 79 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSA--RPEQVEKVLKTRYHDATSKLSQ 79 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEEC--CGGGHHHHHHHHHHHHHHTSST
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCC--ChHHHHHHHHHHHHHHHhhccc
Confidence 4689999999999999998653 5888999999999999999998765322110 01111234444555554433
Q ss_pred CCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc---cCChhHHHHHHHHHHhccCCccccc
Q 003304 548 PGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT---KINDQYLTNVLLKINSKLGGINSLL 613 (832)
Q Consensus 548 ~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~---~~~~q~~~ni~lKiN~KlGG~n~~~ 613 (832)
+.+++|+|||+|+ +++++|+.||++||+++||+||||+.+ +.++||++||+||||+||||+||.+
T Consensus 80 ~~~~~lv~~il~~-~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 80 GKEIDLLIVILPD-NNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp TCCCCEEEEEECS-SCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCCCeEEEEEeCC-CCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 2468999999999 778899999999999999999999985 4579999999999999999999864
No 12
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.90 E-value=2.5e-24 Score=207.09 Aligned_cols=139 Identities=25% Similarity=0.421 Sum_probs=98.1
Q ss_pred CceeecccccceEEEEEeCCC----ccHHHHHHHHHHHhhhcCcccCCCceeeecc-ccccC-CChhHHHHHHHHHHHhh
Q 003304 473 NKRFLEATRIDRWIVVNFSAR----CDTSHISRELINCGRNKGIHIERPFTLIEED-QQTRR-GNPVVRVERMFELITEK 546 (832)
Q Consensus 473 ~~~f~~p~~l~~W~vv~~~~~----~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 546 (832)
+++|++|+++++|+++++++. .++++|++.|.+.|+.+||.+++|..+.... +...+ ...+..++.+++++.++
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRK 81 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHh
Confidence 468999999999999999754 2689999999999999999999887543210 00111 11123456666776665
Q ss_pred CC-CCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc---cCChhHHHHHHHHHHhccCCccccc
Q 003304 547 LP-GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT---KINDQYLTNVLLKINSKLGGINSLL 613 (832)
Q Consensus 547 ~~-~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~---~~~~q~~~ni~lKiN~KlGG~n~~~ 613 (832)
.+ ..|+|+|||+|+ ++ +.|+.||++||+++||+||||+.+ +.++||++||+||||+||||+||.+
T Consensus 82 ~~~~~pqlv~~ilp~-~~-~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 82 HGGARPTLVLCAMSR-KD-DGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp TTTCCCCEEEEEESS-CC-THHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCcEEEEEECC-CC-ccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 44 267999999999 55 459999999999999999999974 5689999999999999999999864
No 13
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.90 E-value=6e-24 Score=201.47 Aligned_cols=129 Identities=28% Similarity=0.494 Sum_probs=106.9
Q ss_pred CceeecccccceEEEEEeCCC-----ccHHHHHHHHHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhC
Q 003304 473 NKRFLEATRIDRWIVVNFSAR-----CDTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKL 547 (832)
Q Consensus 473 ~~~f~~p~~l~~W~vv~~~~~-----~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (832)
+++|++|+++++|++++|+.. .++++|++.|.+.|+.+||.+.+|..+... .+..++++.+++.+.+..
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~------~~~~~~v~~~~~~l~~~~ 75 (138)
T 3luc_A 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKY------AQGADSVEPMFRHLKNTY 75 (138)
T ss_dssp -CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEE------CCSGGGHHHHHHHHHHHC
T ss_pred cCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeec------CCcHHHHHHHHHHHHhcC
Confidence 578999999999999998742 158999999999999999999874432221 112357889999988764
Q ss_pred CCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeeccc---cCChhHHHHHHHHHHhccCCcc
Q 003304 548 PGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPT---KINDQYLTNVLLKINSKLGGIN 610 (832)
Q Consensus 548 ~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~~---~~~~q~~~ni~lKiN~KlGG~n 610 (832)
.+++|+|||+|+ +++.|+.||++||+++||+||||+.+ +.++||++||+||||+||||+|
T Consensus 76 -~~~qlv~~ilp~--~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 76 -AGLQLVVVILPG--KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp -TTCCEEEEEECS--SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred -CCCcEEEEEECC--CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 368999999997 46899999999999999999999974 4579999999999999999987
No 14
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.89 E-value=2.5e-24 Score=206.41 Aligned_cols=134 Identities=21% Similarity=0.294 Sum_probs=93.3
Q ss_pred ccccHHHHHHHhcCCCCCCcccHHHHHhhhcCcEEEeeccCceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeHH
Q 003304 265 KPGPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVY 344 (832)
Q Consensus 265 ~~~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV~ 344 (832)
+++||+|+|.+..+.. .....+.++.+.|+|+.|.+.|+||+|+|.||++.++++++|+..+ |.++||+
T Consensus 1 r~~tvld~~~~~~~~~-~~~~~~~~~~~~l~g~~V~t~y~nr~yrI~~i~~~~~p~~~F~~~~----------g~~~T~~ 69 (150)
T 2xfm_A 1 RSETVLDFMFNLYQQT-EEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKAD----------GSEVSFL 69 (150)
T ss_dssp CCCBHHHHHHHHHHHS-CHHHHHHHHHHHHTTCEEEETTTTEEEECCEEETTCCTTCCCCSSS----------SCCCCHH
T ss_pred CCccHHHHHHHHHccc-cchHHHHHHHHHhCCcEEEEeeCCceEEeeecCCCCCccCeeecCC----------CceeeHH
Confidence 4689999998754321 1111356789999999999999999999999999999999997643 3589999
Q ss_pred HHHHHhcCCccccCCCCcEEecCCCC---------CcccccccceEEcCCccccccCCHHHHHH------HHHHhcCCHH
Q 003304 345 DYFTQHCRIELTYSAYLPCLDVGKPK---------RPNYLPLELCSLVSLQRYTKALSSMQRAS------LVEKSRQKPQ 409 (832)
Q Consensus 345 eYf~~~Y~i~L~~~p~lP~v~vg~~~---------k~~~lP~Elc~i~~~Q~~~~~l~~~q~~~------mik~~~~~P~ 409 (832)
|||+++||++|+| |+||||++|.+. +++|||||||.|++ |+++|+++ |+++++.+|+
T Consensus 70 eYf~~~Y~i~i~~-~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~~-------L~d~~rs~~~~mk~l~~~t~~~P~ 141 (150)
T 2xfm_A 70 EYYRKQYNQEITD-LKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRNDFNVMKDLAVHTRLTPE 141 (150)
T ss_dssp HHHHTTCCCCCCC-SSSCEEEECSSCTTCCSSCSSCCEEECGGGEEECS-------TTC---------------------
T ss_pred HHHHHHcCCccCC-CCCCeEEecccccccccccccceEEecHHHhccCC-------CCHHHHhhHHHHHHHHHHHccCHH
Confidence 9999999999999 999999997642 56999999999994 88898874 8899999999
Q ss_pred HHHHHHHH
Q 003304 410 DRMRTLTD 417 (832)
Q Consensus 410 ~R~~~i~~ 417 (832)
+|.+.|.+
T Consensus 142 ~R~~~i~~ 149 (150)
T 2xfm_A 142 QRQREVGR 149 (150)
T ss_dssp --------
T ss_pred HHHHHHhc
Confidence 99988764
No 15
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.88 E-value=5.2e-23 Score=189.90 Aligned_cols=113 Identities=24% Similarity=0.397 Sum_probs=92.2
Q ss_pred ccccHHHHHHHhcCCCC-----CCcccHHHHHhhhcCcEEEeec------cCceEEEeecCCCCCCcccccccccCCCCC
Q 003304 265 KPGPVIDFLIANQNVRE-----PRFIDWTKAKKMLRNLRVKPRH------RNMEFKIVGLSEKPCNQQFFPMKVKSTEGT 333 (832)
Q Consensus 265 ~~~~l~d~l~~~~~~~~-----~~~~~~~~i~~~Lkgl~V~~~~------~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~ 333 (832)
+++||+|||++.....+ ....++.+++++|+|++|.++| ++|+|+|.||++.+|++++|..+
T Consensus 1 ~~~~vief~~e~~~~~~~~~~~~l~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~------- 73 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD------- 73 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTTCCGGGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESS-------
T ss_pred CCccHHHHHHHHhhhcccccccCCHHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeC-------
Confidence 46899999999653211 1123567899999999999998 35899999999999999999863
Q ss_pred CCCCceeeeHHHHHHHhcCCccccCCCCcEEecCCCCCcccccccceEEcCCccccc
Q 003304 334 NEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTK 390 (832)
Q Consensus 334 ~~~~g~~isV~eYf~~~Y~i~L~~~p~lP~v~vg~~~k~~~lP~Elc~i~~~Q~~~~ 390 (832)
|.++||+|||+++ |++|+| |+||||++|+..+++|||||||.|+|||++++
T Consensus 74 ----g~~isV~~Yf~~~-~~~l~~-p~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~~ 124 (124)
T 3mj0_A 74 ----GKKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNR 124 (124)
T ss_dssp ----SSEEEHHHHHHTT-TCCCSC-SSSEEEECCBTTBCCEECGGGEEEEC------
T ss_pred ----CcEEEHHHHHHHc-CCcccC-CCCCeEeecCCCCceEecceeEEECCCCccCC
Confidence 3689999999987 999999 99999999998889999999999999999863
No 16
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.87 E-value=4.6e-23 Score=195.66 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=88.4
Q ss_pred ccccHHHHHHHhcCCCCCCcccHHHHHhhhcCcEEEeeccCceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeHH
Q 003304 265 KPGPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVY 344 (832)
Q Consensus 265 ~~~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV~ 344 (832)
+..||+|+|.+.... + ....+.++++.|+|+.|.+.|++++|+|.||++..++.++|...+ |.++||+
T Consensus 1 r~~tvld~m~~~~~~-~-~~~~~~~~~k~l~g~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~d----------g~~iT~~ 68 (148)
T 3qir_A 1 RNDCVLDVMHAIYQQ-N-KEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSD----------GKEITFL 68 (148)
T ss_dssp -CCCHHHHHHHHHHH-H-HHHHHHHHHHHHTTCEEEETTTCCEEECCEEETTCCTTSEEECTT----------SCEEEHH
T ss_pred CcchHHHHHHHHHhh-C-cHHHHHHHHHHcCCCEEEEccCCcEEEEeeecCCCCcCccccCCC----------CCcccHH
Confidence 457899999874321 1 112456899999999999999999999999998888888997643 4689999
Q ss_pred HHHHHhcCCccccCCCCcEEecCCCC----------CcccccccceEEcCCccccccCCHHHHH------HHHHHhcCCH
Q 003304 345 DYFTQHCRIELTYSAYLPCLDVGKPK----------RPNYLPLELCSLVSLQRYTKALSSMQRA------SLVEKSRQKP 408 (832)
Q Consensus 345 eYf~~~Y~i~L~~~p~lP~v~vg~~~----------k~~~lP~Elc~i~~~Q~~~~~l~~~q~~------~mik~~~~~P 408 (832)
|||+++|||+|+| |+||||+++.++ +++|||||||.++| |+++|++ +|++++++.|
T Consensus 69 eYf~~kY~i~I~~-~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~ltg-------Ltd~~r~d~~~mk~l~~~tr~~P 140 (148)
T 3qir_A 69 EYYSKNYGITVKE-EDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMTG-------IPEKMKKDFRAMKDLAQQINLSP 140 (148)
T ss_dssp HHHHHHHCCCCSC-TTCCEEEECCTTCCCC---CCSCCEEECGGGEECC-------------------------------
T ss_pred HHHHHHcCCeecC-CCCceEEeecccccCCCCCCccceeeecHHHhhhcC-------CCHHHHhhhHHHHHHHHHHCCCH
Confidence 9999999999999 999999997643 57999999999995 7888876 6999999999
Q ss_pred HHHHHHH
Q 003304 409 QDRMRTL 415 (832)
Q Consensus 409 ~~R~~~i 415 (832)
++|...|
T Consensus 141 ~~R~~~l 147 (148)
T 3qir_A 141 KQHHSAL 147 (148)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 9998765
No 17
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.82 E-value=1.5e-20 Score=172.72 Aligned_cols=114 Identities=21% Similarity=0.268 Sum_probs=90.9
Q ss_pred ccHHHHHHHhcCCCCCCcccHHHHHhhhcCcEEEeeccCceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeHHHH
Q 003304 267 GPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDY 346 (832)
Q Consensus 267 ~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV~eY 346 (832)
+||+|+|.+.....+. ...+.++.+.|+|+.|.+.|++++|+|.+|++..++.++|+.++ |.++||+||
T Consensus 2 ~tvld~~~~~~~~~~~-~~~~~~~~k~l~G~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~d----------g~~~T~~eY 70 (124)
T 3o7v_X 2 ETVLDFMFNFYHQTEE-HKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKAD----------GSEVSFLEY 70 (124)
T ss_dssp CBHHHHHHHSCCCSSH-HHHHHHHHHHHTTCEEEETTSSCEEECCEEETTCCTTCEEECTT----------SCEEEHHHH
T ss_pred ccHHHHHHHHHHhccc-HHHHHHHHHHcCCCEEEEeeCCeEEEEeeeCCCCCccCcccCCC----------CCeeeHHHH
Confidence 6899999875432111 22456899999999999999999999999999999999997643 468999999
Q ss_pred HHHhcCCccccCCCCcEEecCCCC---------CcccccccceEEcCCccccccCCHHHHHH
Q 003304 347 FTQHCRIELTYSAYLPCLDVGKPK---------RPNYLPLELCSLVSLQRYTKALSSMQRAS 399 (832)
Q Consensus 347 f~~~Y~i~L~~~p~lP~v~vg~~~---------k~~~lP~Elc~i~~~Q~~~~~l~~~q~~~ 399 (832)
|+++||++|+| |+||||.++.+. +++|||||||.++| |+++++++
T Consensus 71 yk~kY~i~I~~-~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~ltG-------ltd~~r~d 124 (124)
T 3o7v_X 71 YRKQYNQEITD-LKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRND 124 (124)
T ss_dssp HHHHHCCCCCC-SSCCEEEECCC----------CCEEECGGGEECCC-------CC------
T ss_pred HHHHhCceecC-CCcceEEEeeecccCCCCCCcceEEechhheeccC-------CChHhccC
Confidence 99999999999 999999997532 57999999999995 88888753
No 18
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.79 E-value=4.7e-20 Score=214.03 Aligned_cols=124 Identities=24% Similarity=0.449 Sum_probs=100.3
Q ss_pred eeeeeeeeccccHHHHHHHhc---CCCCCCcccHHH--HHhhhcCcEEEeec------cCceEEEeecCCCCCCcccccc
Q 003304 257 DVSTTMILKPGPVIDFLIANQ---NVREPRFIDWTK--AKKMLRNLRVKPRH------RNMEFKIVGLSEKPCNQQFFPM 325 (832)
Q Consensus 257 Dv~~~~F~~~~~l~d~l~~~~---~~~~~~~~~~~~--i~~~Lkgl~V~~~~------~~r~~~I~~l~~~~a~~~~F~~ 325 (832)
+...+.|++++||+|++.++. +.+++..+++.+ ++++||||+|+++| .+|.|+|.||+..+|.+.+|+.
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~ 454 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH 454 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEE
T ss_pred hhhhhccCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEecc
Confidence 344557999999999999853 445566666654 99999999999999 4688999999999999999987
Q ss_pred cccCCCCCCCCCceeeeHHHHHHHhcCCccccCCCCcEEecCCCCCcccccccceEEcCCccccccCC
Q 003304 326 KVKSTEGTNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALS 393 (832)
Q Consensus 326 ~~~~~~g~~~~~g~~isV~eYf~~~Y~i~L~~~p~lP~v~vg~~~k~~~lP~Elc~i~~~Q~~~~~l~ 393 (832)
+ +++|||+|||+ +||++|+| |+||||++|++++++|||||||.|+|||||++||+
T Consensus 455 ~-----------~~~~sv~~yf~-~~~~~l~~-p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 455 D-----------GKKVTIASYFH-SRNYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp T-----------TEEEEHHHHHH-HTTCCCSC-TTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred C-----------CeEEEHHHHHH-HcCCcccC-CCCCeEecCCCCCCceecceeeEecCCccccccCC
Confidence 4 36999999999 89999999 99999999998899999999999999999999875
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.60 E-value=2.4e-08 Score=118.50 Aligned_cols=85 Identities=21% Similarity=0.325 Sum_probs=71.5
Q ss_pred HHHhhhcCcEEEeeccC-ceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeHHHHHHHhcCCccccCCCCcEEecC
Q 003304 289 KAKKMLRNLRVKPRHRN-MEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVG 367 (832)
Q Consensus 289 ~i~~~Lkgl~V~~~~~~-r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV~eYf~~~Y~i~L~~~p~lP~v~vg 367 (832)
...+.|+|..|.+.|+| |+|+|.++++...+.++|+.++ ..+|+.|||+++||++|++ ++||++.+.
T Consensus 151 ~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~~-----------~~~Ty~dYYk~ky~i~I~d-~~QPLL~~~ 218 (756)
T 2qvw_A 151 TLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRAN-----------ESITYMRYYATAHNIHLRA-ADLPLVAAV 218 (756)
T ss_dssp -CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEETT-----------EEEEHHHHHHHTTCCCCSC-TTSEEEEEE
T ss_pred hhHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCCCC-----------CCCCHHHHHHHHcCccccc-CCCCeEEEE
Confidence 35668999999999999 9999999998888888997532 5899999999999999999 999999763
Q ss_pred CC------------------CCcccccccceEEcCC
Q 003304 368 KP------------------KRPNYLPLELCSLVSL 385 (832)
Q Consensus 368 ~~------------------~k~~~lP~Elc~i~~~ 385 (832)
.. .+.++||||||.+++.
T Consensus 219 ~~~~~~~~r~~~~~~~~~~~~~~v~L~PELC~vt~L 254 (756)
T 2qvw_A 219 RLDDLKDHQIPAPGSWDDLAPKLRFLPPELCLLLPD 254 (756)
T ss_dssp ETTTTTTCCCCSTTC-CCSCSSCEEECTTTCEECCT
T ss_pred ecccccccccccccccccCCccceeeCHHHheeecC
Confidence 21 1247999999999963
No 20
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=82.58 E-value=9.5 Score=35.74 Aligned_cols=103 Identities=25% Similarity=0.356 Sum_probs=58.8
Q ss_pred CeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhC
Q 003304 628 PTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSK 706 (832)
Q Consensus 628 ~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~ 706 (832)
|.-|=++|+||-.. .-+++++|.-.|. |.-..|.- ..+.. +-.+|. .+|+|.|..-|..
T Consensus 17 P~RIE~fDiSh~~G----~~~VasmVVf~~g~p~K~~YRr-f~I~~---~g~DDy----------a~M~Evl~RR~~r-- 76 (159)
T 2nrr_A 17 PYRIEGIDISHLQG----KYTVASLVVFEDGFPKKGDYRR-YKIEQ---DHPDDY----------ESIRTVVKRRYSK-- 76 (159)
T ss_dssp CCEEEEEEEECC-------CCEEEEEEEETTEECGGGCEE-EEC--------CHH----------HHHHHHHHHHHTT--
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeCCccChhhCce-eecCC---CCCCHH----------HHHHHHHHHHhcc--
Confidence 56788999999754 2378888877664 22233332 12211 112343 4788888765543
Q ss_pred CCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeec
Q 003304 707 QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQ 766 (832)
Q Consensus 707 ~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~ 766 (832)
..+|+-|+| || +.||+.. .++++.+++-. +.+|-+.|+ ..++|-
T Consensus 77 ~~~PDLilI--DG-GkgQl~a--------A~~vl~elg~~----i~v~glAK~-~e~l~~ 120 (159)
T 2nrr_A 77 HPLPNLLFV--DG-GIGQVNA--------AIEALKEIGKD----CPVVGLAKK-EETVVF 120 (159)
T ss_dssp SCCCSEEEE--SS-CHHHHHH--------HHHHHHHTTCC----CCEEEEC-----CEEE
T ss_pred CCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCC----ccEEEEEcC-CcEEEe
Confidence 279998888 88 5777654 46677777542 457777786 344443
No 21
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=76.01 E-value=0.78 Score=42.71 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCCCcEEEEEecCCCchhHHHHHHHHHHH----HHHHHHHhCCC----CCCcEEEEEEeeccc
Q 003304 696 ELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQ----IIKAYQHLGEA----DIPKFTVIVAQKNHH 761 (832)
Q Consensus 696 ~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~----i~~a~~~~~~~----~~pkit~Ivv~Krh~ 761 (832)
+-|..|.++.++.+|...+||-|+++|.+.......|+.- +++++..+|+. |.-.+|+||..+...
T Consensus 46 ~eL~~WQ~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~ 119 (160)
T 3qbz_A 46 KELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVE 119 (160)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSS
T ss_pred HHHHHHHHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCc
Confidence 5567777777778998889999999988655554445444 66777788753 667899888665543
No 22
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=74.38 E-value=19 Score=35.67 Aligned_cols=102 Identities=25% Similarity=0.371 Sum_probs=62.8
Q ss_pred CeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhC
Q 003304 628 PTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSK 706 (832)
Q Consensus 628 ~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~ 706 (832)
|.-|=++|+||-.+ .-+|+++|.-.|. |.-..|.- ..+.. +-.+|. .+|.|.|..-|..
T Consensus 22 p~rIE~fDiSh~~G----~~~V~smVvf~~g~p~k~~YRr-f~i~~---~g~DDy----------a~m~Evl~RR~~r-- 81 (220)
T 2nrt_A 22 PYRIEGIDISHLQG----KYTVASLVVFEDGFPKKGDYRR-YKIEQ---DHPDDY----------ESIRTVVKRRYSK-- 81 (220)
T ss_dssp CCEEEEEEEEEETT----TEEEEEEEEEETTEECGGGCEE-EEEEC---SSCCHH----------HHHHHHHHHHHTT--
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeCCccChhhCce-eeCCC---CCCCHH----------HHHHHHHHHHhcc--
Confidence 56788999999754 3478888877664 22233432 22221 112343 4788888765543
Q ss_pred CCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeee
Q 003304 707 QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLF 765 (832)
Q Consensus 707 ~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff 765 (832)
..+|+-|+| || +.||+.. .++++.+++- .+.+|-+.|+. .++|
T Consensus 82 ~~~PDLili--DG-GkgQl~~--------a~~vl~~lg~----~i~v~glaK~~-e~l~ 124 (220)
T 2nrt_A 82 HPLPNLLFV--DG-GIGQVNA--------AIEALKEIGK----DCPVVGLAKKE-ETVV 124 (220)
T ss_dssp SCCCSEEEE--SS-SHHHHHH--------HHHHHHHTTC----CCCEEEECTTT-CCEE
T ss_pred CCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCeEEEEECCC-cEEE
Confidence 269998888 88 5777654 4667777753 25577778873 3444
No 23
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=44.04 E-value=83 Score=31.22 Aligned_cols=100 Identities=23% Similarity=0.285 Sum_probs=56.2
Q ss_pred CeEEEEEEeeeCCCCCCCCCeEEEEEEeecC-CccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHH--
Q 003304 628 PTMILGMDVSHGSPGRSDIPSVAAVVGSQSW-PLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRT-- 704 (832)
Q Consensus 628 ~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~-- 704 (832)
|.-|=++|+||-.. .-+|+++|.-.|. |.-..|.- ..+.. .+-.+|. .+|.|.|..-|..
T Consensus 14 p~rIE~fDiSh~~G----~~~V~smVvf~~g~p~k~~YR~-f~i~~--~~g~DDy----------a~m~Evl~RR~~r~~ 76 (226)
T 3c65_A 14 PRRIEAFDNSNIYG----ADPVSALVVFLDGKPAKKEYRK-YKVKT--VAGPNDY----------ETMREVVRRRYTRVL 76 (226)
T ss_dssp CSEEEEEEEEESSS----SSCEEEEEEEETTEECGGGCEE-EECCC--CCTTCHH----------HHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccCC----cCceEEEEEEeCCccChhhCce-eecCC--CCCCcHH----------HHHHHHHHHHHhhhh
Confidence 66788999999754 3478888877764 22233332 12211 1111332 3666666554432
Q ss_pred -hCCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHH-HHhCCCCCCcEEEEEEeec
Q 003304 705 -SKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAY-QHLGEADIPKFTVIVAQKN 759 (832)
Q Consensus 705 -~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~-~~~~~~~~pkit~Ivv~Kr 759 (832)
....+|+-|+| || +.||+.. .++++ .+++- .+.+|-+.|.
T Consensus 77 ~e~~~~PDLili--DG-GkgQl~~--------a~~vl~~~lg~----~i~v~glaK~ 118 (226)
T 3c65_A 77 KEGLPLPDLIII--DG-GKGHLSA--------VRDVLENELGL----DVPLAGLAKD 118 (226)
T ss_dssp HHTCCCCSEEEE--SS-CHHHHHH--------HHHHHHHTSCC----CCCEEEC---
T ss_pred cccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHhcCC----CceEEEEEcC
Confidence 12269998888 88 5777654 46677 46653 2456666774
No 24
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=39.33 E-value=39 Score=35.17 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=48.1
Q ss_pred HHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 540 FELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 540 ~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
++.++++....|.|.++..-+...+..|...|...+.+.||.+..+.. ......-+-+.+.++|.
T Consensus 43 v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~ 108 (303)
T 4b4u_A 43 VEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNA 108 (303)
T ss_dssp HHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcC
Confidence 344444434568898888766345678999999999999999988875 44556667777888885
No 25
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=29.33 E-value=87 Score=32.51 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=53.4
Q ss_pred HHHHHHHhhCC-CCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh--ccCCccccc
Q 003304 538 RMFELITEKLP-GPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS--KLGGINSLL 613 (832)
Q Consensus 538 ~~~~~~~~~~~-~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~--KlGG~n~~~ 613 (832)
.-++.++++.. ..|.|.++..-++..+..|...|...+.+.||.+..+.. ......-+-+.+.++|. ..-|+...+
T Consensus 24 ~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVql 103 (300)
T 4a26_A 24 DKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQL 103 (300)
T ss_dssp HHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECS
T ss_pred HHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcC
Confidence 33445555433 468898888866345788999999999999999988875 44555667788888885 355665433
No 26
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=28.64 E-value=93 Score=32.04 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=51.6
Q ss_pred HHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh--ccCCcccc
Q 003304 539 MFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS--KLGGINSL 612 (832)
Q Consensus 539 ~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~--KlGG~n~~ 612 (832)
-++.++++....|.|.++..-+...+..|...|...+.+.||.+..+.. ......-+-+.+.++|. ..-|+...
T Consensus 24 ~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVq 100 (286)
T 4a5o_A 24 RVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQ 100 (286)
T ss_dssp HHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred HHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEc
Confidence 3444554433458898888866345678999999999999999988775 34555567778888885 35555443
No 27
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=27.74 E-value=86 Score=32.56 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=49.1
Q ss_pred HHHHHHHHhhC-CCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 537 ERMFELITEKL-PGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 537 ~~~~~~~~~~~-~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
..-++.++++. +..|.|.++..-++..+..|.+.|...+.+.||.+..+.. ......-+-+.+.++|.
T Consensus 21 ~~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~ 90 (301)
T 1a4i_A 21 KNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNE 90 (301)
T ss_dssp HHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 33444555543 2348898888866455788999999999999999988875 44555567778888885
No 28
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=25.88 E-value=86 Score=32.32 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=48.1
Q ss_pred HHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 537 ERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 537 ~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
...++.++++....|.|.++..-+...+..|.+.|...+.+.||.+..+.. ......-+-+.+.++|.
T Consensus 20 ~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~ 88 (288)
T 1b0a_A 20 AQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNA 88 (288)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 333445554432348898888766445788999999999999999988765 34455566778888885
No 29
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=23.51 E-value=95 Score=31.97 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=51.5
Q ss_pred HHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHhc--cCCcccc
Q 003304 539 MFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINSK--LGGINSL 612 (832)
Q Consensus 539 ~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~K--lGG~n~~ 612 (832)
-++.++++....|.|.++..-+...+..|...|...+.+.||.+..+.. ......-+-..+.++|.- .-|+...
T Consensus 23 ~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvq 99 (285)
T 3l07_A 23 QVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQ 99 (285)
T ss_dssp HHHHHHHHHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred HHHHHHhcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEc
Confidence 3344444323368898888766345678999999999999999988875 345556677788888853 5565443
No 30
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=22.73 E-value=1.1e+02 Score=31.39 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=52.4
Q ss_pred HHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh--ccCCccccc
Q 003304 539 MFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS--KLGGINSLL 613 (832)
Q Consensus 539 ~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~--KlGG~n~~~ 613 (832)
-++.++++. ..|.|.++..-+...+..|...|...+.+.||.+..+.. ......-+-..+.++|. +.-|++..+
T Consensus 23 ~v~~l~~~~-~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvql 99 (285)
T 3p2o_A 23 KNQFLKSKG-IESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQL 99 (285)
T ss_dssp HHHHHHTTT-CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred HHHHHHhcC-CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecC
Confidence 344444443 368898887766345678999999999999999988775 34455667788888885 466665443
No 31
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=22.54 E-value=1.2e+02 Score=31.09 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=47.2
Q ss_pred HHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCceeeeecc-ccCChhHHHHHHHHHHh
Q 003304 539 MFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP-TKINDQYLTNVLLKINS 604 (832)
Q Consensus 539 ~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQcv~~-~~~~~q~~~ni~lKiN~ 604 (832)
.++.++.+ +..|.|.++..-+...+..|...|...+.+.||.+..+.. ......-+-+.+.++|.
T Consensus 22 ~v~~l~~~-g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~ 87 (281)
T 2c2x_A 22 RVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNA 87 (281)
T ss_dssp HHHHHHHT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34445444 2348898887765345788999999999999999988875 44455667778888885
Done!