Query 003305
Match_columns 832
No_of_seqs 334 out of 2739
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 20:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469 Elongation factor 2 [T 100.0 2E-174 4E-179 1368.5 49.9 828 1-831 1-830 (842)
2 PLN00116 translation elongatio 100.0 4E-153 8E-158 1383.5 86.0 832 1-832 1-832 (843)
3 PTZ00416 elongation factor 2; 100.0 2E-152 5E-157 1373.4 83.5 823 1-832 1-825 (836)
4 KOG0468 U5 snRNP-specific prot 100.0 3E-139 6E-144 1133.1 56.3 816 2-832 111-945 (971)
5 COG0480 FusA Translation elong 100.0 1E-126 3E-131 1104.7 61.1 666 16-829 7-697 (697)
6 PRK07560 elongation factor EF- 100.0 2E-125 3E-130 1132.1 70.1 710 6-832 7-722 (731)
7 TIGR00490 aEF-2 translation el 100.0 6E-122 1E-126 1098.2 67.5 711 6-832 6-720 (720)
8 KOG0465 Mitochondrial elongati 100.0 1E-123 2E-128 1011.5 41.5 661 17-821 37-719 (721)
9 KOG0467 Translation elongation 100.0 8E-122 2E-126 1016.8 44.9 789 14-830 4-869 (887)
10 PRK12739 elongation factor G; 100.0 5E-114 1E-118 1028.5 66.3 665 16-822 5-687 (691)
11 PRK00007 elongation factor G; 100.0 1E-113 2E-118 1024.6 64.7 665 16-822 7-690 (693)
12 TIGR00484 EF-G translation elo 100.0 7E-111 1E-115 1002.2 64.5 662 15-822 6-687 (689)
13 PRK13351 elongation factor G; 100.0 5E-108 1E-112 980.3 64.3 662 16-820 5-685 (687)
14 PRK12740 elongation factor G; 100.0 1E-101 3E-106 924.1 60.9 642 25-809 1-662 (668)
15 KOG0464 Elongation factor G [T 100.0 9.6E-98 2E-102 771.4 27.8 657 17-808 35-740 (753)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 4.3E-77 9.3E-82 691.1 49.0 464 19-809 1-475 (594)
17 PRK10218 GTP-binding protein; 100.0 1.6E-75 3.4E-80 676.3 49.5 465 17-808 3-479 (607)
18 PRK05433 GTP-binding protein L 100.0 9.3E-74 2E-78 666.0 49.7 488 15-825 3-520 (600)
19 TIGR01393 lepA GTP-binding pro 100.0 9.7E-73 2.1E-77 656.9 51.0 486 18-825 2-517 (595)
20 COG1217 TypA Predicted membran 100.0 1.2E-65 2.6E-70 542.7 38.9 466 17-809 3-479 (603)
21 PRK00741 prfC peptide chain re 100.0 7.1E-66 1.5E-70 590.5 39.1 437 13-569 4-472 (526)
22 KOG0462 Elongation factor-type 100.0 7.2E-64 1.6E-68 539.6 33.1 471 17-809 58-536 (650)
23 TIGR00503 prfC peptide chain r 100.0 2.4E-63 5.1E-68 569.7 39.2 435 12-564 4-468 (527)
24 COG0481 LepA Membrane GTPase L 100.0 3.5E-59 7.6E-64 495.3 35.8 471 15-804 5-483 (603)
25 COG4108 PrfC Peptide chain rel 100.0 6.8E-52 1.5E-56 436.9 23.7 434 16-562 9-467 (528)
26 cd01885 EF2 EF2 (for archaea a 100.0 6.1E-38 1.3E-42 322.3 20.1 204 20-229 1-209 (222)
27 cd01683 EF2_IV_snRNP EF-2_doma 100.0 7.3E-38 1.6E-42 309.0 18.1 174 559-732 1-178 (178)
28 cd01886 EF-G Elongation factor 100.0 2.4E-36 5.3E-41 320.3 22.6 255 21-343 1-270 (270)
29 cd04169 RF3 RF3 subfamily. Pe 100.0 2.6E-33 5.7E-38 296.9 20.1 247 18-343 1-267 (267)
30 cd04168 TetM_like Tet(M)-like 100.0 6.6E-33 1.4E-37 289.2 21.8 222 21-343 1-237 (237)
31 CHL00071 tufA elongation facto 100.0 2.1E-32 4.6E-37 308.2 27.0 301 10-471 3-307 (409)
32 cd01681 aeEF2_snRNP_like_IV Th 100.0 1.5E-32 3.3E-37 273.5 17.7 173 559-731 1-177 (177)
33 COG5256 TEF1 Translation elong 100.0 3.6E-31 7.7E-36 281.5 26.9 285 16-469 4-313 (428)
34 PRK12736 elongation factor Tu; 100.0 2.8E-31 6.1E-36 297.7 26.7 286 15-471 8-297 (394)
35 PLN03126 Elongation factor Tu; 100.0 3.2E-30 6.9E-35 292.6 28.4 304 7-471 69-376 (478)
36 PRK12735 elongation factor Tu; 100.0 3.2E-30 6.9E-35 289.4 28.1 292 11-471 4-299 (396)
37 TIGR00485 EF-Tu translation el 100.0 4.7E-30 1E-34 288.3 27.8 288 13-471 6-297 (394)
38 cd04170 EF-G_bact Elongation f 100.0 1.2E-30 2.5E-35 278.8 20.4 252 21-343 1-268 (268)
39 PRK05306 infB translation init 100.0 1.7E-29 3.7E-34 299.0 32.0 314 17-537 288-628 (787)
40 PLN00043 elongation factor 1-a 100.0 5.2E-30 1.1E-34 290.0 26.5 289 15-470 3-317 (447)
41 PRK00049 elongation factor Tu; 100.0 2.1E-29 4.5E-34 282.6 28.4 291 12-471 5-299 (396)
42 PTZ00141 elongation factor 1- 100.0 9.1E-30 2E-34 288.3 25.3 289 15-470 3-317 (446)
43 PLN03127 Elongation factor Tu; 100.0 8.2E-29 1.8E-33 280.0 29.5 289 15-470 57-349 (447)
44 KOG0460 Mitochondrial translat 100.0 4.5E-30 9.8E-35 263.3 16.4 288 15-471 50-341 (449)
45 COG0050 TufB GTPases - transla 100.0 1.7E-29 3.7E-34 254.5 19.6 287 13-470 6-296 (394)
46 cd04167 Snu114p Snu114p subfam 100.0 5.5E-29 1.2E-33 256.8 21.1 197 20-229 1-200 (213)
47 PRK12317 elongation factor 1-a 100.0 7E-28 1.5E-32 274.0 25.9 285 17-470 4-309 (425)
48 TIGR02034 CysN sulfate adenyly 100.0 1.2E-27 2.6E-32 269.2 26.9 127 21-163 2-146 (406)
49 TIGR00487 IF-2 translation ini 100.0 5.9E-27 1.3E-31 271.9 32.1 305 18-522 86-419 (587)
50 PRK05124 cysN sulfate adenylyl 100.0 3.1E-27 6.6E-32 269.7 27.9 132 16-163 24-173 (474)
51 TIGR00483 EF-1_alpha translati 100.0 3.1E-27 6.7E-32 268.6 26.5 288 14-470 2-311 (426)
52 CHL00189 infB translation init 100.0 2.3E-26 4.9E-31 269.9 29.3 319 17-538 242-584 (742)
53 PTZ00327 eukaryotic translatio 99.9 1.5E-26 3.2E-31 260.8 25.7 134 17-163 32-184 (460)
54 KOG0458 Elongation factor 1 al 99.9 1.6E-25 3.5E-30 246.1 24.5 287 16-468 174-487 (603)
55 PF00009 GTP_EFTU: Elongation 99.9 8.7E-27 1.9E-31 235.7 12.1 170 17-220 1-175 (188)
56 PRK05506 bifunctional sulfate 99.9 9E-25 2E-29 259.6 26.2 130 18-163 23-170 (632)
57 PRK10512 selenocysteinyl-tRNA- 99.9 1.6E-24 3.5E-29 253.6 25.7 115 21-163 2-117 (614)
58 cd01884 EF_Tu EF-Tu subfamily. 99.9 3.4E-25 7.4E-30 224.2 14.6 166 20-218 3-169 (195)
59 PRK04000 translation initiatio 99.9 6.7E-24 1.5E-28 238.8 26.3 136 15-163 5-152 (411)
60 COG5257 GCD11 Translation init 99.9 5.8E-23 1.3E-27 210.1 25.7 331 17-536 8-363 (415)
61 TIGR03680 eif2g_arch translati 99.9 6.2E-23 1.4E-27 231.3 27.4 133 18-163 3-147 (406)
62 TIGR00475 selB selenocysteine- 99.9 1.2E-22 2.6E-27 237.3 24.2 114 21-163 2-116 (581)
63 cd04166 CysN_ATPS CysN_ATPS su 99.9 4E-23 8.8E-28 212.2 15.5 127 21-163 1-143 (208)
64 KOG1145 Mitochondrial translat 99.9 1.6E-22 3.4E-27 219.7 20.6 125 18-177 152-276 (683)
65 COG2895 CysN GTPases - Sulfate 99.9 2.4E-22 5.1E-27 208.4 20.3 152 17-192 4-173 (431)
66 cd01883 EF1_alpha Eukaryotic e 99.9 5.1E-23 1.1E-27 213.1 13.2 127 21-163 1-150 (219)
67 COG0532 InfB Translation initi 99.9 3.8E-21 8.2E-26 212.3 26.4 130 18-180 4-133 (509)
68 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 3E-23 6.5E-28 178.1 7.2 80 727-806 1-80 (80)
69 COG3276 SelB Selenocysteine-sp 99.9 3.7E-21 8.1E-26 206.9 21.0 114 21-163 2-116 (447)
70 COG5258 GTPBP1 GTPase [General 99.9 1.5E-21 3.3E-26 203.7 15.6 291 16-459 114-424 (527)
71 cd01891 TypA_BipA TypA (tyrosi 99.9 5.9E-21 1.3E-25 194.1 17.3 144 18-181 1-144 (194)
72 PRK04004 translation initiatio 99.9 5.6E-20 1.2E-24 214.4 26.2 130 18-163 5-136 (586)
73 PF00679 EFG_C: Elongation fac 99.8 5.5E-21 1.2E-25 168.0 8.2 85 724-809 1-85 (89)
74 KOG0459 Polypeptide release fa 99.8 1.4E-20 2.9E-25 198.1 12.4 153 16-190 76-251 (501)
75 cd01890 LepA LepA subfamily. 99.8 8.5E-20 1.9E-24 182.7 17.6 132 20-163 1-132 (179)
76 smart00838 EFG_C Elongation fa 99.8 4.7E-21 1E-25 167.1 6.5 83 725-809 1-83 (85)
77 TIGR00491 aIF-2 translation in 99.8 2.3E-18 4.9E-23 200.0 27.8 129 19-163 4-134 (590)
78 cd04096 eEF2_snRNP_like_C eEF2 99.8 1.8E-20 3.8E-25 161.6 7.6 80 727-806 1-80 (80)
79 KOG0461 Selenocysteine-specifi 99.8 4.1E-19 8.8E-24 182.9 18.6 129 19-163 7-135 (522)
80 PF03764 EFG_IV: Elongation fa 99.8 3.1E-20 6.8E-25 173.4 8.6 99 622-722 22-120 (120)
81 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 2.6E-20 5.6E-25 159.6 7.2 78 727-806 1-78 (78)
82 cd03711 Tet_C Tet_C: C-terminu 99.8 4.6E-20 1E-24 158.0 6.6 78 727-806 1-78 (78)
83 cd01888 eIF2_gamma eIF2-gamma 99.8 1.8E-19 3.9E-24 184.4 12.2 131 20-163 1-150 (203)
84 PF14492 EFG_II: Elongation Fa 99.8 1E-19 2.2E-24 153.8 7.7 73 485-559 2-75 (75)
85 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.9E-19 6.2E-24 184.9 12.0 140 21-163 1-151 (224)
86 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 8.6E-20 1.9E-24 156.6 6.7 78 727-806 1-78 (78)
87 cd03710 BipA_TypA_C BipA_TypA_ 99.8 2.7E-19 5.9E-24 153.5 7.8 78 727-805 1-78 (79)
88 cd01514 Elongation_Factor_C El 99.8 4.9E-19 1.1E-23 152.3 7.0 79 727-806 1-79 (79)
89 cd01889 SelB_euk SelB subfamil 99.8 9.5E-18 2E-22 170.3 16.3 132 21-163 2-133 (192)
90 cd03709 lepA_C lepA_C: This fa 99.7 1.4E-18 3E-23 149.4 6.6 78 727-805 1-79 (80)
91 cd00881 GTP_translation_factor 99.7 4.9E-17 1.1E-21 163.8 15.7 127 21-163 1-127 (189)
92 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 3.6E-17 7.9E-22 145.4 11.1 94 376-469 1-94 (94)
93 cd04171 SelB SelB subfamily. 99.7 2.9E-16 6.4E-21 154.2 14.3 115 21-163 2-117 (164)
94 cd03690 Tet_II Tet_II: This su 99.7 1.8E-16 4E-21 137.9 9.9 83 373-468 1-84 (85)
95 PRK14845 translation initiatio 99.7 1E-14 2.2E-19 177.0 27.2 116 32-163 474-591 (1049)
96 cd01684 Tet_like_IV EF-G_domai 99.7 5.1E-16 1.1E-20 143.2 11.5 75 644-722 40-115 (115)
97 KOG0463 GTP-binding protein GP 99.6 3.2E-16 6.9E-21 163.1 8.7 306 20-471 134-456 (641)
98 cd04092 mtEFG2_II_like mtEFG2_ 99.6 1.8E-15 3.8E-20 131.5 9.6 82 376-469 1-83 (83)
99 cd01680 EFG_like_IV Elongation 99.6 6E-15 1.3E-19 136.9 11.8 77 644-722 40-116 (116)
100 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1E-14 2.3E-19 144.0 14.2 114 21-163 2-115 (168)
101 cd03700 eEF2_snRNP_like_II EF2 99.6 7.3E-15 1.6E-19 130.4 11.1 91 376-469 1-92 (93)
102 cd03689 RF3_II RF3_II: this su 99.6 4.5E-15 9.8E-20 129.0 9.2 80 378-469 1-84 (85)
103 COG1160 Predicted GTPases [Gen 99.6 1.3E-14 2.9E-19 158.3 13.8 115 18-163 177-302 (444)
104 PRK00093 GTP-binding protein D 99.6 2.1E-14 4.5E-19 164.6 15.8 115 18-163 172-297 (435)
105 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 9.5E-15 2.1E-19 126.9 9.5 81 376-468 1-82 (83)
106 cd04091 mtEFG1_II_like mtEFG1_ 99.6 1.4E-14 3.1E-19 125.1 9.6 79 376-468 1-80 (81)
107 KOG1144 Translation initiation 99.5 1.4E-14 2.9E-19 162.2 10.6 129 20-164 476-606 (1064)
108 TIGR03594 GTPase_EngA ribosome 99.5 4.2E-14 9.1E-19 161.8 15.1 114 19-163 172-296 (429)
109 COG1159 Era GTPase [General fu 99.5 4.1E-14 8.9E-19 146.6 12.9 114 19-163 6-127 (298)
110 COG1160 Predicted GTPases [Gen 99.5 3.6E-14 7.9E-19 154.9 11.9 113 20-163 4-125 (444)
111 cd01895 EngA2 EngA2 subfamily. 99.5 3.1E-13 6.7E-18 133.6 15.6 114 19-163 2-126 (174)
112 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.5 4.3E-14 9.2E-19 131.0 8.7 83 637-722 32-116 (116)
113 cd01894 EngA1 EngA1 subfamily. 99.5 9.4E-14 2E-18 135.2 11.6 110 23-163 1-118 (157)
114 cd03691 BipA_TypA_II BipA_TypA 99.5 7.9E-14 1.7E-18 122.0 9.9 84 376-468 1-85 (86)
115 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.4E-13 2.9E-18 136.0 12.5 115 21-163 1-120 (167)
116 KOG0466 Translation initiation 99.5 6.6E-14 1.4E-18 142.6 10.1 134 17-163 36-192 (466)
117 PRK03003 GTP-binding protein D 99.5 1E-12 2.2E-17 151.5 20.7 115 18-163 210-335 (472)
118 COG2229 Predicted GTPase [Gene 99.5 3.1E-13 6.6E-18 129.9 13.3 131 19-174 10-142 (187)
119 PRK15494 era GTPase Era; Provi 99.5 4E-13 8.8E-18 147.9 15.0 115 18-163 51-173 (339)
120 cd03699 lepA_II lepA_II: This 99.4 3.2E-13 6.9E-18 118.0 9.1 81 376-469 1-86 (86)
121 cd01693 mtEFG2_like_IV mtEF-G2 99.4 2.6E-13 5.5E-18 126.6 9.0 67 653-722 54-120 (120)
122 cd01864 Rab19 Rab19 subfamily. 99.4 5.7E-13 1.2E-17 131.5 12.0 116 18-163 2-121 (165)
123 PF02421 FeoB_N: Ferrous iron 99.4 3.6E-13 7.7E-18 130.0 10.1 109 21-163 2-118 (156)
124 PRK03003 GTP-binding protein D 99.4 6.3E-13 1.4E-17 153.3 13.7 117 16-163 35-159 (472)
125 TIGR03594 GTPase_EngA ribosome 99.4 4.1E-13 8.9E-18 153.7 12.2 112 21-163 1-120 (429)
126 TIGR00436 era GTP-binding prot 99.4 1.3E-12 2.8E-17 139.8 14.6 111 21-163 2-120 (270)
127 TIGR03598 GTPase_YsxC ribosome 99.4 2.3E-12 4.9E-17 129.2 15.3 114 17-163 16-142 (179)
128 PRK09554 feoB ferrous iron tra 99.4 5.7E-12 1.2E-16 151.4 21.0 110 20-163 4-125 (772)
129 KOG1143 Predicted translation 99.4 5.2E-13 1.1E-17 139.4 9.8 158 20-190 168-333 (591)
130 PRK00093 GTP-binding protein D 99.4 1.1E-12 2.3E-17 150.5 13.2 113 20-163 2-122 (435)
131 PRK09518 bifunctional cytidyla 99.4 1.4E-12 3E-17 157.4 14.0 115 18-163 449-574 (712)
132 cd04164 trmE TrmE (MnmE, ThdF, 99.4 2E-12 4.4E-17 125.6 12.0 110 21-163 3-120 (157)
133 cd04114 Rab30 Rab30 subfamily. 99.4 2.1E-12 4.5E-17 127.8 12.2 118 14-163 2-125 (169)
134 cd04105 SR_beta Signal recogni 99.4 4.5E-12 9.7E-17 129.7 14.5 131 20-185 1-141 (203)
135 cd04154 Arl2 Arl2 subfamily. 99.4 4E-12 8.8E-17 126.6 13.2 113 16-163 11-128 (173)
136 cd01898 Obg Obg subfamily. Th 99.4 4.8E-12 1E-16 125.2 13.6 111 21-163 2-127 (170)
137 cd04124 RabL2 RabL2 subfamily. 99.4 4.4E-12 9.4E-17 124.8 13.2 113 21-163 2-117 (161)
138 cd00879 Sar1 Sar1 subfamily. 99.4 3.3E-12 7.1E-17 129.2 12.4 123 6-163 6-133 (190)
139 PRK15467 ethanolamine utilizat 99.4 2.4E-12 5.2E-17 126.3 10.9 99 20-163 2-104 (158)
140 cd04157 Arl6 Arl6 subfamily. 99.4 5E-12 1.1E-16 123.9 13.2 110 21-163 1-117 (162)
141 smart00178 SAR Sar1p-like memb 99.4 5.3E-12 1.1E-16 127.2 13.6 120 9-163 7-131 (184)
142 PRK00089 era GTPase Era; Revie 99.4 7.6E-12 1.6E-16 135.6 15.7 115 18-163 4-126 (292)
143 cd00878 Arf_Arl Arf (ADP-ribos 99.4 3.5E-12 7.6E-17 124.7 11.8 108 21-163 1-113 (158)
144 PRK09518 bifunctional cytidyla 99.4 3.6E-12 7.8E-17 153.8 14.3 115 18-163 274-396 (712)
145 TIGR00231 small_GTP small GTP- 99.4 2.4E-12 5.2E-17 124.5 10.4 113 20-163 2-121 (161)
146 cd04115 Rab33B_Rab33A Rab33B/R 99.4 4.7E-12 1E-16 125.7 12.4 115 19-163 2-122 (170)
147 cd04151 Arl1 Arl1 subfamily. 99.4 5.8E-12 1.2E-16 123.4 12.7 108 21-163 1-113 (158)
148 PF01926 MMR_HSR1: 50S ribosom 99.4 7.4E-12 1.6E-16 116.1 12.6 107 21-159 1-116 (116)
149 cd04161 Arl2l1_Arl13_like Arl2 99.4 6.8E-12 1.5E-16 124.3 13.2 108 21-163 1-113 (167)
150 cd04145 M_R_Ras_like M-Ras/R-R 99.4 4.9E-12 1.1E-16 124.3 12.0 112 20-163 3-120 (164)
151 cd04113 Rab4 Rab4 subfamily. 99.4 4.7E-12 1E-16 124.2 11.8 113 21-163 2-118 (161)
152 cd01879 FeoB Ferrous iron tran 99.4 2.7E-12 5.8E-17 125.2 9.8 106 24-163 1-114 (158)
153 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 1.3E-11 2.7E-16 123.2 14.6 120 8-163 5-129 (174)
154 cd04106 Rab23_lke Rab23-like s 99.3 7.7E-12 1.7E-16 122.7 12.2 115 21-163 2-119 (162)
155 cd01866 Rab2 Rab2 subfamily. 99.3 7.3E-12 1.6E-16 124.1 12.0 115 19-163 4-122 (168)
156 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 7.8E-12 1.7E-16 123.5 12.0 108 22-163 2-112 (164)
157 TIGR00450 mnmE_trmE_thdF tRNA 99.3 8.3E-12 1.8E-16 141.7 13.8 113 19-163 203-323 (442)
158 smart00175 RAB Rab subfamily o 99.3 1.6E-11 3.5E-16 120.5 13.9 113 21-163 2-118 (164)
159 cd01861 Rab6 Rab6 subfamily. 99.3 9.1E-12 2E-16 122.1 11.9 114 20-163 1-118 (161)
160 cd04163 Era Era subfamily. Er 99.3 2.7E-11 5.9E-16 118.6 15.2 114 19-163 3-124 (168)
161 cd01897 NOG NOG1 is a nucleola 99.3 1.7E-11 3.7E-16 121.1 12.9 112 20-163 1-126 (168)
162 cd01893 Miro1 Miro1 subfamily. 99.3 2.4E-11 5.2E-16 120.1 13.6 111 21-163 2-116 (166)
163 cd04159 Arl10_like Arl10-like 99.3 1.4E-11 3.1E-16 119.6 11.8 108 22-163 2-114 (159)
164 smart00173 RAS Ras subfamily o 99.3 1.2E-11 2.6E-16 121.7 11.4 111 21-163 2-118 (164)
165 PRK05291 trmE tRNA modificatio 99.3 1.2E-11 2.6E-16 141.2 12.3 112 19-163 215-334 (449)
166 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.5E-11 3.3E-16 123.8 11.6 114 20-163 4-122 (183)
167 cd01862 Rab7 Rab7 subfamily. 99.3 1.7E-11 3.7E-16 121.5 11.8 113 21-163 2-122 (172)
168 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 5.1E-11 1.1E-15 121.8 15.2 112 21-163 2-123 (201)
169 cd01878 HflX HflX subfamily. 99.3 2.2E-11 4.7E-16 124.8 12.3 116 17-163 39-166 (204)
170 cd04122 Rab14 Rab14 subfamily. 99.3 2.1E-11 4.5E-16 120.5 11.8 114 20-163 3-120 (166)
171 cd01867 Rab8_Rab10_Rab13_like 99.3 2.6E-11 5.5E-16 120.0 12.3 115 19-163 3-121 (167)
172 cd01882 BMS1 Bms1. Bms1 is an 99.3 3.7E-11 8.1E-16 124.8 13.8 107 18-163 38-146 (225)
173 cd01863 Rab18 Rab18 subfamily. 99.3 1.8E-11 4E-16 120.0 10.9 113 21-163 2-119 (161)
174 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.3 3.1E-11 6.6E-16 119.2 12.4 115 19-163 2-120 (166)
175 cd04158 ARD1 ARD1 subfamily. 99.3 4.2E-11 9.1E-16 118.8 13.4 108 21-163 1-113 (169)
176 cd04138 H_N_K_Ras_like H-Ras/N 99.3 2.6E-11 5.5E-16 118.7 11.7 111 21-163 3-119 (162)
177 PF09439 SRPRB: Signal recogni 99.3 2.8E-11 6E-16 119.5 11.7 130 19-186 3-145 (181)
178 COG0218 Predicted GTPase [Gene 99.3 6.3E-11 1.4E-15 116.8 14.0 113 17-163 22-148 (200)
179 cd00877 Ran Ran (Ras-related n 99.3 2.3E-11 5E-16 120.4 11.0 113 21-163 2-117 (166)
180 cd04116 Rab9 Rab9 subfamily. 99.3 7.3E-11 1.6E-15 116.9 14.6 116 18-163 4-127 (170)
181 PTZ00369 Ras-like protein; Pro 99.3 4.6E-11 9.9E-16 120.9 13.2 114 19-163 5-123 (189)
182 cd04147 Ras_dva Ras-dva subfam 99.3 2.1E-11 4.6E-16 124.3 10.8 112 21-163 1-117 (198)
183 cd04137 RheB Rheb (Ras Homolog 99.3 2.6E-11 5.7E-16 121.4 11.3 113 20-163 2-119 (180)
184 cd04149 Arf6 Arf6 subfamily. 99.3 4.3E-11 9.4E-16 118.7 12.6 110 19-163 9-123 (168)
185 cd04120 Rab12 Rab12 subfamily. 99.3 4E-11 8.6E-16 122.4 12.6 113 21-163 2-118 (202)
186 cd04119 RJL RJL (RabJ-Like) su 99.3 2.8E-11 6.1E-16 119.1 11.2 113 21-163 2-123 (168)
187 cd04146 RERG_RasL11_like RERG/ 99.3 3.3E-11 7.2E-16 118.9 11.7 112 21-163 1-119 (165)
188 cd00154 Rab Rab family. Rab G 99.3 3.4E-11 7.5E-16 116.8 11.6 113 21-163 2-118 (159)
189 PRK04213 GTP-binding protein; 99.3 4.9E-11 1.1E-15 121.8 13.1 111 17-163 7-143 (201)
190 cd01860 Rab5_related Rab5-rela 99.3 3.2E-11 6.9E-16 118.5 11.2 114 20-163 2-119 (163)
191 cd04123 Rab21 Rab21 subfamily. 99.2 8.5E-11 1.8E-15 114.9 13.8 113 21-163 2-118 (162)
192 cd04150 Arf1_5_like Arf1-Arf5- 99.2 7.5E-11 1.6E-15 115.8 13.4 108 21-163 2-114 (159)
193 cd04139 RalA_RalB RalA/RalB su 99.2 6.4E-11 1.4E-15 116.1 12.9 112 21-163 2-118 (164)
194 cd04155 Arl3 Arl3 subfamily. 99.2 6.2E-11 1.3E-15 117.8 12.8 113 16-163 11-128 (173)
195 TIGR02528 EutP ethanolamine ut 99.2 1.8E-11 3.9E-16 117.5 8.6 97 20-163 1-101 (142)
196 cd04175 Rap1 Rap1 subgroup. T 99.2 6.9E-11 1.5E-15 116.4 12.9 112 20-163 2-119 (164)
197 COG0486 ThdF Predicted GTPase 99.2 3.9E-11 8.4E-16 131.7 12.1 113 19-163 217-337 (454)
198 cd00880 Era_like Era (E. coli 99.2 5.4E-11 1.2E-15 115.1 11.8 110 24-163 1-117 (163)
199 PLN03118 Rab family protein; P 99.2 6.9E-11 1.5E-15 121.8 13.2 114 19-163 14-133 (211)
200 cd04136 Rap_like Rap-like subf 99.2 4.9E-11 1.1E-15 117.0 11.3 112 20-163 2-119 (163)
201 cd01865 Rab3 Rab3 subfamily. 99.2 5.3E-11 1.2E-15 117.5 11.5 114 20-163 2-119 (165)
202 cd04156 ARLTS1 ARLTS1 subfamil 99.2 5E-11 1.1E-15 116.8 11.0 109 21-163 1-114 (160)
203 cd04177 RSR1 RSR1 subgroup. R 99.2 5.3E-11 1.1E-15 117.9 11.3 111 21-163 3-119 (168)
204 TIGR03156 GTP_HflX GTP-binding 99.2 5.3E-11 1.1E-15 131.4 12.4 115 18-163 188-314 (351)
205 cd04140 ARHI_like ARHI subfami 99.2 8.3E-11 1.8E-15 116.1 12.4 113 20-163 2-121 (165)
206 smart00177 ARF ARF-like small 99.2 1.2E-10 2.7E-15 116.2 13.6 110 19-163 13-127 (175)
207 cd04110 Rab35 Rab35 subfamily. 99.2 7.4E-11 1.6E-15 120.4 12.1 116 18-163 5-123 (199)
208 cd01868 Rab11_like Rab11-like. 99.2 6.9E-11 1.5E-15 116.5 11.4 115 19-163 3-121 (165)
209 cd04142 RRP22 RRP22 subfamily. 99.2 6.7E-11 1.4E-15 120.6 11.3 113 21-163 2-129 (198)
210 PLN00223 ADP-ribosylation fact 99.2 1.4E-10 3E-15 116.5 13.5 111 18-163 16-131 (181)
211 cd04112 Rab26 Rab26 subfamily. 99.2 7.8E-11 1.7E-15 119.4 11.6 114 21-163 2-119 (191)
212 KOG0084 GTPase Rab1/YPT1, smal 99.2 8.7E-11 1.9E-15 114.1 11.2 117 17-163 7-127 (205)
213 cd04144 Ras2 Ras2 subfamily. 99.2 6.6E-11 1.4E-15 119.8 11.0 111 21-163 1-119 (190)
214 PRK00454 engB GTP-binding prot 99.2 2E-10 4.4E-15 116.6 14.5 115 16-163 21-148 (196)
215 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 2.1E-10 4.5E-15 116.8 14.3 113 20-163 1-129 (196)
216 cd04108 Rab36_Rab34 Rab34/Rab3 99.2 8.9E-11 1.9E-15 116.7 11.4 113 21-163 2-119 (170)
217 cd04101 RabL4 RabL4 (Rab-like4 99.2 1.1E-10 2.4E-15 114.8 11.9 114 21-163 2-120 (164)
218 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 9.1E-11 2E-15 116.8 11.3 112 20-163 3-120 (172)
219 cd04132 Rho4_like Rho4-like su 99.2 2.2E-10 4.8E-15 115.5 14.0 112 21-163 2-118 (187)
220 cd04127 Rab27A Rab27a subfamil 99.2 1.4E-10 3E-15 116.1 12.1 125 19-163 4-133 (180)
221 COG1084 Predicted GTPase [Gene 99.2 2.8E-10 6.1E-15 119.2 14.5 123 9-163 158-293 (346)
222 cd00876 Ras Ras family. The R 99.2 1.2E-10 2.6E-15 113.6 10.9 112 21-163 1-117 (160)
223 PLN03071 GTP-binding nuclear p 99.2 1.6E-10 3.4E-15 119.8 12.3 117 17-163 11-130 (219)
224 PLN03110 Rab GTPase; Provision 99.2 1.5E-10 3.3E-15 119.7 12.1 117 17-163 10-130 (216)
225 PRK11058 GTPase HflX; Provisio 99.2 1.6E-10 3.5E-15 130.5 13.0 114 19-163 197-322 (426)
226 cd04109 Rab28 Rab28 subfamily. 99.2 1.8E-10 3.9E-15 119.1 12.3 114 21-163 2-122 (215)
227 cd04126 Rab20 Rab20 subfamily. 99.2 2E-10 4.3E-15 118.7 12.4 108 21-163 2-113 (220)
228 cd04176 Rap2 Rap2 subgroup. T 99.2 1.7E-10 3.8E-15 113.3 11.5 111 21-163 3-119 (163)
229 smart00176 RAN Ran (Ras-relate 99.2 1.4E-10 3.1E-15 118.2 10.8 109 25-163 1-112 (200)
230 cd04121 Rab40 Rab40 subfamily. 99.2 3.1E-10 6.7E-15 114.7 13.1 117 17-163 4-123 (189)
231 PRK12298 obgE GTPase CgtA; Rev 99.2 3.7E-10 8.1E-15 126.1 14.9 114 19-163 159-288 (390)
232 cd04118 Rab24 Rab24 subfamily. 99.1 2.9E-10 6.4E-15 115.2 12.4 112 21-163 2-118 (193)
233 cd01874 Cdc42 Cdc42 subfamily. 99.1 2E-10 4.4E-15 114.7 10.9 112 20-163 2-118 (175)
234 PTZ00133 ADP-ribosylation fact 99.1 2.3E-10 5.1E-15 115.0 11.4 109 20-163 18-131 (182)
235 cd01881 Obg_like The Obg-like 99.1 1.8E-10 3.9E-15 114.5 10.4 109 24-163 1-133 (176)
236 cd04135 Tc10 TC10 subfamily. 99.1 1.4E-10 3.1E-15 115.2 9.6 111 21-163 2-117 (174)
237 PF08477 Miro: Miro-like prote 99.1 1.3E-10 2.7E-15 108.0 8.3 113 21-161 1-119 (119)
238 PRK12299 obgE GTPase CgtA; Rev 99.1 3.6E-10 7.8E-15 123.8 13.2 115 18-163 157-284 (335)
239 smart00174 RHO Rho (Ras homolo 99.1 3.5E-10 7.5E-15 112.5 11.9 110 22-163 1-115 (174)
240 cd04134 Rho3 Rho3 subfamily. 99.1 1.9E-10 4.1E-15 116.4 10.0 112 20-163 1-117 (189)
241 cd01892 Miro2 Miro2 subfamily. 99.1 3.3E-10 7.2E-15 112.4 11.4 116 17-163 2-121 (169)
242 cd04128 Spg1 Spg1p. Spg1p (se 99.1 5.1E-10 1.1E-14 112.5 12.8 111 21-163 2-117 (182)
243 cd00157 Rho Rho (Ras homology) 99.1 2E-10 4.4E-15 113.6 9.8 112 21-163 2-117 (171)
244 cd00882 Ras_like_GTPase Ras-li 99.1 2.3E-10 5E-15 109.2 10.0 110 24-163 1-115 (157)
245 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 6.3E-10 1.4E-14 111.8 13.5 113 19-163 5-122 (182)
246 cd04131 Rnd Rnd subfamily. Th 99.1 5.1E-10 1.1E-14 112.1 12.7 111 21-163 3-118 (178)
247 cd04111 Rab39 Rab39 subfamily. 99.1 3.5E-10 7.6E-15 116.5 11.8 115 20-163 3-122 (211)
248 PF00025 Arf: ADP-ribosylation 99.1 3.7E-10 8.1E-15 112.7 11.4 112 17-163 12-128 (175)
249 TIGR02729 Obg_CgtA Obg family 99.1 7.6E-10 1.6E-14 121.2 14.6 115 18-163 156-286 (329)
250 PLN03108 Rab family protein; P 99.1 7.7E-10 1.7E-14 113.9 13.9 116 18-163 5-124 (210)
251 cd04125 RabA_like RabA-like su 99.1 4.4E-10 9.5E-15 113.5 11.8 113 21-163 2-118 (188)
252 cd04133 Rop_like Rop subfamily 99.1 7E-10 1.5E-14 110.8 13.0 113 20-163 2-118 (176)
253 KOG0052 Translation elongation 99.1 2E-11 4.4E-16 130.8 2.0 130 15-163 3-155 (391)
254 cd04143 Rhes_like Rhes_like su 99.1 6.2E-10 1.3E-14 117.2 12.5 111 21-163 2-126 (247)
255 cd01850 CDC_Septin CDC/Septin. 99.1 1.6E-09 3.5E-14 115.9 15.8 123 20-163 5-156 (276)
256 cd01871 Rac1_like Rac1-like su 99.1 4.6E-10 1E-14 112.0 10.9 112 20-163 2-118 (174)
257 PF10662 PduV-EutP: Ethanolami 99.1 3.6E-10 7.7E-15 106.8 9.4 98 19-163 1-102 (143)
258 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.1 4.6E-10 1E-14 116.0 11.2 112 20-163 2-118 (222)
259 cd04102 RabL3 RabL3 (Rab-like3 99.1 8.8E-10 1.9E-14 112.3 12.9 116 21-163 2-142 (202)
260 KOG1423 Ras-like GTPase ERA [C 99.1 3.7E-10 7.9E-15 116.4 10.0 116 17-163 70-198 (379)
261 cd01875 RhoG RhoG subfamily. 99.1 6.3E-10 1.4E-14 112.8 11.7 113 20-163 4-120 (191)
262 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.1 1.4E-09 3.1E-14 113.1 14.1 114 19-163 13-130 (232)
263 PRK12296 obgE GTPase CgtA; Rev 99.1 1.4E-09 2.9E-14 123.7 14.6 114 18-163 158-297 (500)
264 cd01870 RhoA_like RhoA-like su 99.1 4.8E-10 1E-14 111.6 9.7 112 20-163 2-118 (175)
265 cd04130 Wrch_1 Wrch-1 subfamil 99.0 6.9E-10 1.5E-14 110.4 9.5 112 21-163 2-117 (173)
266 cd04117 Rab15 Rab15 subfamily. 99.0 1.6E-09 3.4E-14 106.6 11.9 113 21-163 2-118 (161)
267 PRK12297 obgE GTPase CgtA; Rev 99.0 2.5E-09 5.5E-14 120.1 14.9 114 19-163 158-287 (424)
268 cd01876 YihA_EngB The YihA (En 99.0 4.7E-09 1E-13 102.9 14.3 109 22-163 2-123 (170)
269 PLN00023 GTP-binding protein; 99.0 2.1E-09 4.6E-14 115.0 12.5 130 17-163 19-164 (334)
270 PTZ00132 GTP-binding nuclear p 99.0 2.3E-09 5E-14 110.8 12.3 115 19-163 9-126 (215)
271 KOG0080 GTPase Rab18, small G 99.0 7.2E-10 1.6E-14 103.4 7.2 115 19-163 11-130 (209)
272 TIGR00437 feoB ferrous iron tr 99.0 1.5E-09 3.2E-14 127.9 11.2 104 26-163 1-112 (591)
273 cd04148 RGK RGK subfamily. Th 99.0 2.7E-09 5.9E-14 110.7 11.9 112 21-163 2-119 (221)
274 cd04104 p47_IIGP_like p47 (47- 99.0 3.1E-09 6.7E-14 108.3 11.7 114 20-163 2-120 (197)
275 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.0 2.8E-09 6E-14 103.2 10.3 118 16-163 19-141 (221)
276 KOG0098 GTPase Rab2, small G p 99.0 3.1E-09 6.6E-14 102.1 10.1 114 20-163 7-124 (216)
277 PRK09866 hypothetical protein; 98.9 2.1E-08 4.5E-13 114.4 17.5 67 97-163 229-302 (741)
278 KOG0095 GTPase Rab30, small G 98.9 1.3E-08 2.9E-13 93.6 12.5 117 17-163 5-125 (213)
279 KOG0092 GTPase Rab5/YPT51 and 98.9 2.7E-09 5.8E-14 103.4 8.1 115 19-163 5-123 (200)
280 PF00071 Ras: Ras family; Int 98.9 1.6E-08 3.5E-13 99.1 13.6 113 21-163 1-117 (162)
281 KOG0073 GTP-binding ADP-ribosy 98.9 1.4E-08 2.9E-13 95.7 11.9 115 14-163 11-130 (185)
282 KOG1191 Mitochondrial GTPase [ 98.9 5.9E-09 1.3E-13 114.3 10.8 121 12-163 261-402 (531)
283 KOG0078 GTP-binding protein SE 98.9 1.4E-08 3E-13 100.4 11.8 118 16-163 9-130 (207)
284 KOG0394 Ras-related GTPase [Ge 98.9 4.7E-09 1E-13 100.6 8.2 117 17-163 7-131 (210)
285 KOG0090 Signal recognition par 98.9 7.8E-09 1.7E-13 101.8 9.7 129 18-185 37-177 (238)
286 cd01853 Toc34_like Toc34-like 98.9 7.2E-08 1.6E-12 101.4 17.6 118 15-163 27-162 (249)
287 COG3596 Predicted GTPase [Gene 98.8 2.9E-08 6.3E-13 102.0 12.9 166 17-229 37-217 (296)
288 COG0370 FeoB Fe2+ transport sy 98.8 2.1E-08 4.5E-13 115.1 11.7 110 20-163 4-121 (653)
289 COG1100 GTPase SAR1 and relate 98.8 2.4E-08 5.1E-13 103.3 11.1 114 20-163 6-124 (219)
290 cd04103 Centaurin_gamma Centau 98.8 2.7E-08 5.9E-13 97.6 10.9 106 21-163 2-112 (158)
291 cd04129 Rho2 Rho2 subfamily. 98.8 2.2E-08 4.7E-13 101.1 10.2 112 20-163 2-118 (187)
292 KOG0087 GTPase Rab11/YPT3, sma 98.8 2.3E-08 5E-13 98.4 9.7 116 18-163 13-132 (222)
293 smart00053 DYNc Dynamin, GTPas 98.8 1.1E-07 2.3E-12 99.0 14.4 66 98-163 125-205 (240)
294 KOG0070 GTP-binding ADP-ribosy 98.8 2.4E-08 5.1E-13 96.8 8.7 112 17-163 15-131 (181)
295 KOG0086 GTPase Rab4, small G p 98.8 3.8E-08 8.1E-13 91.1 9.5 115 19-163 9-127 (214)
296 cd01873 RhoBTB RhoBTB subfamil 98.8 4E-08 8.7E-13 99.9 10.6 67 95-163 63-133 (195)
297 KOG0075 GTP-binding ADP-ribosy 98.8 2E-08 4.3E-13 92.6 7.3 110 20-163 21-135 (186)
298 cd01896 DRG The developmentall 98.7 1.3E-07 2.9E-12 98.8 14.0 97 21-150 2-105 (233)
299 COG2262 HflX GTPases [General 98.7 5.5E-08 1.2E-12 105.4 11.1 116 17-163 190-317 (411)
300 TIGR00991 3a0901s02IAP34 GTP-b 98.7 2.2E-07 4.8E-12 99.1 15.3 127 6-163 21-166 (313)
301 TIGR02836 spore_IV_A stage IV 98.7 2.7E-07 5.8E-12 100.4 15.5 142 9-162 7-192 (492)
302 KOG1489 Predicted GTP-binding 98.7 1.1E-07 2.3E-12 99.2 11.5 116 17-163 194-325 (366)
303 KOG0079 GTP-binding protein H- 98.7 6.6E-08 1.4E-12 89.2 8.8 113 21-163 10-125 (198)
304 KOG1532 GTPase XAB1, interacts 98.7 1.9E-08 4.2E-13 102.2 5.5 162 16-184 16-215 (366)
305 KOG0093 GTPase Rab3, small G p 98.6 2.5E-07 5.4E-12 85.4 11.2 115 19-163 21-139 (193)
306 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 3.7E-07 8.1E-12 94.4 13.8 133 21-189 1-144 (232)
307 KOG0395 Ras-related GTPase [Ge 98.6 1E-07 2.2E-12 96.5 9.3 114 19-163 3-121 (196)
308 PF03144 GTP_EFTU_D2: Elongati 98.6 3.2E-08 7E-13 83.8 3.8 71 393-468 3-74 (74)
309 PF00350 Dynamin_N: Dynamin fa 98.6 1.3E-07 2.9E-12 93.4 8.7 64 97-160 100-168 (168)
310 KOG0074 GTP-binding ADP-ribosy 98.6 2.6E-07 5.7E-12 84.7 8.8 116 14-163 12-132 (185)
311 KOG0088 GTPase Rab21, small G 98.5 5.1E-08 1.1E-12 90.8 3.6 115 19-163 13-131 (218)
312 KOG0076 GTP-binding ADP-ribosy 98.5 1.9E-07 4.2E-12 88.9 6.3 128 7-163 6-139 (197)
313 KOG0071 GTP-binding ADP-ribosy 98.5 1.2E-06 2.5E-11 80.4 11.1 110 19-163 17-131 (180)
314 PF04548 AIG1: AIG1 family; I 98.5 2.7E-06 5.9E-11 87.7 14.5 113 20-163 1-129 (212)
315 PRK13768 GTPase; Provisional 98.4 7.6E-07 1.6E-11 94.2 8.7 66 98-163 97-175 (253)
316 COG5192 BMS1 GTP-binding prote 98.4 1E-06 2.3E-11 97.0 9.4 107 19-163 69-176 (1077)
317 PRK09435 membrane ATPase/prote 98.3 2.9E-06 6.3E-11 92.4 11.8 60 95-163 146-207 (332)
318 PF00735 Septin: Septin; Inte 98.3 5.2E-06 1.1E-10 88.9 13.4 138 20-184 5-170 (281)
319 PF03029 ATP_bind_1: Conserved 98.3 1.3E-07 2.7E-12 98.9 0.4 65 99-163 92-169 (238)
320 PF05049 IIGP: Interferon-indu 98.3 1.9E-06 4.1E-11 94.6 9.0 112 19-163 35-154 (376)
321 COG4917 EutP Ethanolamine util 98.3 1.5E-06 3.2E-11 78.5 6.4 98 20-163 2-103 (148)
322 KOG4252 GTP-binding protein [S 98.3 6.8E-07 1.5E-11 85.2 3.7 117 17-163 18-137 (246)
323 PTZ00258 GTP-binding protein; 98.3 3.1E-06 6.7E-11 93.9 9.5 104 13-132 15-126 (390)
324 PTZ00099 rab6; Provisional 98.2 6.1E-06 1.3E-10 82.4 10.6 68 96-163 27-98 (176)
325 COG0536 Obg Predicted GTPase [ 98.2 1E-05 2.2E-10 85.9 12.4 114 19-163 159-288 (369)
326 KOG0077 Vesicle coat complex C 98.2 7E-06 1.5E-10 77.8 10.0 119 15-172 16-139 (193)
327 KOG3883 Ras family small GTPas 98.2 1E-05 2.3E-10 75.4 10.8 117 18-163 8-131 (198)
328 COG1163 DRG Predicted GTPase [ 98.2 3.5E-06 7.6E-11 88.5 7.7 111 19-162 63-185 (365)
329 cd01900 YchF YchF subfamily. 98.2 3.7E-06 8E-11 89.4 7.8 96 22-133 1-104 (274)
330 cd01342 Translation_Factor_II_ 98.2 9.3E-06 2E-10 69.2 8.5 71 377-459 2-72 (83)
331 KOG0097 GTPase Rab14, small G 98.1 1.6E-05 3.5E-10 72.7 10.1 115 19-163 11-129 (215)
332 KOG2486 Predicted GTPase [Gene 98.1 8E-06 1.7E-10 84.0 8.8 114 18-163 135-261 (320)
333 TIGR00993 3a0901s04IAP86 chlor 98.1 3.6E-05 7.7E-10 88.8 14.9 114 19-163 118-249 (763)
334 PRK09601 GTP-binding protein Y 98.1 8.9E-06 1.9E-10 89.3 9.7 98 20-133 3-108 (364)
335 TIGR00073 hypB hydrogenase acc 98.1 1.1E-05 2.4E-10 82.8 9.6 137 16-163 19-161 (207)
336 KOG1954 Endocytosis/signaling 98.1 5E-05 1.1E-09 80.6 14.3 162 19-189 58-244 (532)
337 TIGR00750 lao LAO/AO transport 98.1 1.3E-05 2.9E-10 87.1 9.9 61 96-163 125-185 (300)
338 PRK14722 flhF flagellar biosyn 98.1 1.1E-05 2.4E-10 89.1 8.6 135 19-163 137-294 (374)
339 COG5019 CDC3 Septin family pro 98.0 9.4E-05 2E-09 79.6 14.8 126 17-163 21-175 (373)
340 PRK09602 translation-associate 98.0 2.3E-05 5.1E-10 87.9 9.4 98 20-133 2-114 (396)
341 cd01899 Ygr210 Ygr210 subfamil 98.0 2E-05 4.4E-10 85.8 8.5 37 97-133 68-111 (318)
342 KOG0083 GTPase Rab26/Rab37, sm 97.9 7.8E-06 1.7E-10 74.2 3.9 70 94-163 43-116 (192)
343 cd03114 ArgK-like The function 97.9 4.9E-05 1.1E-09 73.6 8.9 59 96-161 90-148 (148)
344 PF03193 DUF258: Protein of un 97.9 8.1E-06 1.8E-10 79.3 3.3 36 7-43 24-59 (161)
345 KOG1547 Septin CDC10 and relat 97.9 0.00044 9.5E-09 69.7 15.1 125 17-163 44-197 (336)
346 KOG1490 GTP-binding protein CR 97.9 5.4E-05 1.2E-09 83.6 9.4 115 16-163 165-294 (620)
347 cd01858 NGP_1 NGP-1. Autoanti 97.8 2.9E-05 6.3E-10 76.0 6.2 26 19-44 102-127 (157)
348 KOG0081 GTPase Rab27, small G 97.8 3.4E-05 7.5E-10 72.3 5.9 67 97-163 66-137 (219)
349 KOG2655 Septin family protein 97.8 0.00032 6.8E-09 76.2 14.0 138 19-184 21-186 (366)
350 cd04178 Nucleostemin_like Nucl 97.8 4.3E-05 9.3E-10 75.9 6.7 25 19-43 117-141 (172)
351 KOG1707 Predicted Ras related/ 97.8 9.2E-05 2E-09 83.5 9.9 112 20-163 10-128 (625)
352 cd03115 SRP The signal recogni 97.8 0.00016 3.5E-09 71.9 10.8 66 96-163 81-152 (173)
353 cd03110 Fer4_NifH_child This p 97.7 0.00052 1.1E-08 68.6 14.0 66 96-163 91-156 (179)
354 KOG0091 GTPase Rab39, small G 97.7 9.4E-05 2E-09 69.9 7.7 112 20-163 9-129 (213)
355 TIGR01425 SRP54_euk signal rec 97.7 0.00023 4.9E-09 80.1 11.8 66 96-163 181-252 (429)
356 PF03308 ArgK: ArgK protein; 97.7 4.3E-05 9.3E-10 79.0 5.2 161 8-183 18-194 (266)
357 KOG0072 GTP-binding ADP-ribosy 97.7 6.1E-05 1.3E-09 69.7 5.5 120 8-163 8-132 (182)
358 PF00448 SRP54: SRP54-type pro 97.6 4.7E-05 1E-09 77.3 4.7 65 97-163 83-153 (196)
359 cd03112 CobW_like The function 97.6 0.00026 5.7E-09 69.3 9.6 63 97-162 86-158 (158)
360 TIGR00064 ftsY signal recognit 97.6 0.00021 4.6E-09 76.3 9.7 135 18-163 71-230 (272)
361 cd03698 eRF3_II_like eRF3_II_l 97.6 0.00047 1E-08 59.7 9.9 66 375-455 1-66 (83)
362 PRK10416 signal recognition pa 97.6 0.00043 9.3E-09 75.6 11.4 135 19-163 114-272 (318)
363 cd01849 YlqF_related_GTPase Yl 97.6 0.00011 2.4E-09 71.7 6.1 26 18-43 99-124 (155)
364 TIGR00101 ureG urease accessor 97.5 0.00018 3.9E-09 73.3 7.3 58 97-163 91-150 (199)
365 cd03693 EF1_alpha_II EF1_alpha 97.5 0.00059 1.3E-08 60.2 9.6 84 373-470 2-88 (91)
366 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.00013 2.8E-09 70.1 5.7 24 20-43 84-107 (141)
367 KOG3886 GTP-binding protein [S 97.5 0.0002 4.4E-09 71.8 7.0 115 19-163 4-129 (295)
368 KOG0096 GTPase Ran/TC4/GSP1 (n 97.5 0.00027 5.7E-09 68.9 7.4 116 18-163 9-127 (216)
369 PRK00771 signal recognition pa 97.5 0.00028 6E-09 80.0 8.5 61 98-163 176-245 (437)
370 PRK11889 flhF flagellar biosyn 97.5 0.00026 5.6E-09 77.9 7.6 135 18-163 240-390 (436)
371 cd01855 YqeH YqeH. YqeH is an 97.5 0.00022 4.7E-09 72.2 6.6 25 19-43 127-151 (190)
372 cd01851 GBP Guanylate-binding 97.4 0.00043 9.4E-09 71.9 8.8 91 17-133 5-103 (224)
373 TIGR03597 GTPase_YqeH ribosome 97.4 0.00023 5E-09 79.4 6.7 114 20-163 155-279 (360)
374 TIGR00157 ribosome small subun 97.4 0.00026 5.7E-09 74.6 6.6 24 20-43 121-144 (245)
375 PRK12288 GTPase RsgA; Reviewed 97.4 0.0002 4.2E-09 79.1 5.6 23 21-43 207-229 (347)
376 cd01859 MJ1464 MJ1464. This f 97.4 0.00042 9E-09 67.6 7.1 25 17-41 99-123 (156)
377 KOG0393 Ras-related small GTPa 97.4 0.00019 4.2E-09 71.6 4.7 114 19-163 4-122 (198)
378 PRK12727 flagellar biosynthesi 97.4 0.00045 9.8E-09 78.9 8.1 64 97-163 428-497 (559)
379 KOG0448 Mitofusin 1 GTPase, in 97.3 0.0024 5.1E-08 73.6 13.5 136 17-163 107-274 (749)
380 COG1161 Predicted GTPases [Gen 97.3 0.00034 7.4E-09 76.6 6.5 57 19-109 132-188 (322)
381 PRK12289 GTPase RsgA; Reviewed 97.3 0.00026 5.6E-09 78.2 5.5 24 21-44 174-197 (352)
382 cd02036 MinD Bacterial cell di 97.3 0.0029 6.2E-08 62.9 12.4 63 99-163 64-127 (179)
383 PRK09563 rbgA GTPase YlqF; Rev 97.3 0.00042 9.1E-09 74.9 6.7 25 19-43 121-145 (287)
384 TIGR03596 GTPase_YlqF ribosome 97.3 0.00059 1.3E-08 73.3 7.7 24 19-42 118-141 (276)
385 KOG0410 Predicted GTP binding 97.3 0.00063 1.4E-08 71.6 7.3 114 19-163 178-307 (410)
386 PRK14974 cell division protein 97.3 0.00091 2E-08 73.3 9.0 62 97-163 222-292 (336)
387 COG1703 ArgK Putative periplas 97.3 0.0014 3.1E-08 68.8 9.8 163 7-184 39-217 (323)
388 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00038 8.3E-09 75.2 5.8 24 20-43 162-185 (287)
389 PRK12726 flagellar biosynthesi 97.2 0.00068 1.5E-08 74.5 7.3 25 18-42 205-229 (407)
390 cd01856 YlqF YlqF. Proteins o 97.2 0.00059 1.3E-08 67.8 6.3 25 19-43 115-139 (171)
391 COG0012 Predicted GTPase, prob 97.2 0.00095 2.1E-08 72.5 8.0 98 20-133 3-109 (372)
392 cd02038 FleN-like FleN is a me 97.2 0.0038 8.2E-08 59.7 11.1 79 98-183 45-125 (139)
393 PRK13796 GTPase YqeH; Provisio 97.1 0.00072 1.6E-08 75.5 6.8 37 7-43 148-184 (365)
394 TIGR00959 ffh signal recogniti 97.1 0.00086 1.9E-08 75.9 7.1 63 96-163 181-252 (428)
395 PRK10867 signal recognition pa 97.1 0.0023 4.9E-08 72.5 10.3 63 96-163 182-253 (433)
396 TIGR00092 GTP-binding protein 97.1 0.0017 3.6E-08 71.6 8.9 98 20-133 3-109 (368)
397 COG1162 Predicted GTPases [Gen 97.1 0.00053 1.1E-08 72.8 4.8 22 20-41 165-186 (301)
398 KOG1673 Ras GTPases [General f 97.1 0.0016 3.4E-08 61.3 7.2 115 20-164 21-138 (205)
399 PRK10463 hydrogenase nickel in 97.1 0.0016 3.4E-08 69.5 8.2 26 17-42 102-127 (290)
400 cd04089 eRF3_II eRF3_II: domai 97.0 0.0055 1.2E-07 52.8 9.9 65 375-455 1-65 (82)
401 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.001 2.2E-08 63.8 5.5 52 112-163 2-55 (141)
402 COG0523 Putative GTPases (G3E 97.0 0.0038 8.2E-08 68.1 10.0 157 20-188 2-176 (323)
403 PRK14721 flhF flagellar biosyn 97.0 0.0014 3.1E-08 73.7 6.9 24 19-42 191-214 (420)
404 cd02037 MRP-like MRP (Multiple 96.9 0.0035 7.6E-08 62.0 8.6 66 96-163 66-134 (169)
405 PRK00098 GTPase RsgA; Reviewed 96.8 0.0016 3.4E-08 70.8 5.7 23 20-42 165-187 (298)
406 cd03111 CpaE_like This protein 96.8 0.012 2.6E-07 53.4 10.3 59 99-159 44-106 (106)
407 KOG1486 GTP-binding protein DR 96.8 0.0015 3.3E-08 66.3 4.7 84 19-134 62-152 (364)
408 PRK12724 flagellar biosynthesi 96.8 0.0018 3.9E-08 72.3 5.8 65 96-163 298-372 (432)
409 COG3640 CooC CO dehydrogenase 96.8 0.0027 5.9E-08 64.5 6.5 66 95-163 131-198 (255)
410 PRK13849 putative crown gall t 96.8 0.0053 1.2E-07 64.0 8.9 64 96-161 82-151 (231)
411 PF02492 cobW: CobW/HypB/UreG, 96.7 0.0017 3.7E-08 64.9 4.5 82 97-187 84-172 (178)
412 cd03694 GTPBP_II Domain II of 96.7 0.014 3.1E-07 50.9 9.7 59 387-455 12-70 (87)
413 cd01858 NGP_1 NGP-1. Autoanti 96.7 0.0019 4.2E-08 63.1 4.7 49 115-163 2-52 (157)
414 cd00066 G-alpha G protein alph 96.7 0.0038 8.3E-08 68.4 7.5 67 97-163 160-241 (317)
415 PRK06731 flhF flagellar biosyn 96.7 0.0047 1E-07 65.7 7.9 63 97-163 154-224 (270)
416 PRK05703 flhF flagellar biosyn 96.7 0.0049 1.1E-07 70.1 8.6 65 97-163 299-370 (424)
417 KOG1534 Putative transcription 96.7 0.0022 4.9E-08 63.6 4.9 140 21-163 5-177 (273)
418 KOG1491 Predicted GTP-binding 96.7 0.0058 1.3E-07 65.1 8.2 108 10-133 11-126 (391)
419 PRK12723 flagellar biosynthesi 96.7 0.0051 1.1E-07 68.8 8.3 66 96-163 253-325 (388)
420 PRK14723 flhF flagellar biosyn 96.7 0.0019 4.2E-08 77.2 5.2 24 19-42 185-208 (767)
421 cd02042 ParA ParA and ParB of 96.6 0.011 2.5E-07 53.1 9.1 80 22-143 2-83 (104)
422 smart00275 G_alpha G protein a 96.6 0.0065 1.4E-07 67.2 8.3 67 97-163 183-264 (342)
423 cd01859 MJ1464 MJ1464. This f 96.5 0.0036 7.9E-08 61.0 5.3 50 114-163 5-54 (156)
424 COG0541 Ffh Signal recognition 96.5 0.0065 1.4E-07 67.2 7.6 140 19-163 100-252 (451)
425 PRK06995 flhF flagellar biosyn 96.5 0.0087 1.9E-07 68.6 8.7 24 19-42 256-279 (484)
426 cd03697 EFTU_II EFTU_II: Elong 96.5 0.016 3.4E-07 50.6 8.4 57 387-455 12-68 (87)
427 KOG2485 Conserved ATP/GTP bind 96.4 0.0061 1.3E-07 64.4 6.6 78 18-121 142-220 (335)
428 COG1419 FlhF Flagellar GTP-bin 96.4 0.003 6.6E-08 69.6 4.6 134 18-163 202-351 (407)
429 TIGR00257 IMPACT_YIGZ uncharac 96.4 0.024 5.1E-07 57.5 10.6 112 679-796 89-200 (204)
430 TIGR02475 CobW cobalamin biosy 96.4 0.011 2.5E-07 65.2 9.0 25 18-42 3-27 (341)
431 TIGR03596 GTPase_YlqF ribosome 96.3 0.0039 8.5E-08 67.0 4.6 56 106-163 5-61 (276)
432 PRK11568 hypothetical protein; 96.3 0.031 6.8E-07 56.7 10.6 112 679-796 89-200 (204)
433 PRK11537 putative GTP-binding 96.3 0.017 3.6E-07 63.3 9.3 156 18-187 3-178 (318)
434 TIGR03348 VI_IcmF type VI secr 96.3 0.0091 2E-07 76.6 8.1 44 120-163 200-256 (1169)
435 cd01856 YlqF YlqF. Proteins o 96.2 0.0043 9.3E-08 61.6 4.0 56 106-163 3-59 (171)
436 cd03688 eIF2_gamma_II eIF2_gam 96.2 0.023 5E-07 51.1 8.1 90 373-467 3-104 (113)
437 cd03696 selB_II selB_II: this 96.2 0.029 6.2E-07 48.5 8.4 55 387-455 12-66 (83)
438 KOG2423 Nucleolar GTPase [Gene 96.1 0.0045 9.7E-08 66.8 3.6 37 17-53 305-341 (572)
439 PRK08099 bifunctional DNA-bind 96.1 0.02 4.4E-07 64.6 9.0 31 16-46 216-246 (399)
440 cd03695 CysN_NodQ_II CysN_NodQ 96.0 0.039 8.5E-07 47.4 8.5 50 393-455 17-66 (81)
441 PRK13695 putative NTPase; Prov 96.0 0.016 3.4E-07 57.6 7.0 36 125-160 98-136 (174)
442 KOG1424 Predicted GTP-binding 95.8 0.0082 1.8E-07 67.3 3.9 25 19-43 314-338 (562)
443 TIGR03371 cellulose_yhjQ cellu 95.7 0.099 2.2E-06 54.9 12.0 64 98-163 115-181 (246)
444 KOG0447 Dynamin-like GTP bindi 95.7 0.099 2.1E-06 58.8 11.9 145 17-183 306-507 (980)
445 PRK09563 rbgA GTPase YlqF; Rev 95.6 0.0091 2E-07 64.5 3.6 57 105-163 7-64 (287)
446 cd03692 mtIF2_IVc mtIF2_IVc: t 95.6 0.077 1.7E-06 45.9 8.6 64 378-455 6-69 (84)
447 PRK01889 GTPase RsgA; Reviewed 95.3 0.014 3.1E-07 64.9 4.0 26 19-44 195-220 (356)
448 cd01855 YqeH YqeH. YqeH is an 95.3 0.016 3.5E-07 58.5 4.0 56 106-163 19-74 (190)
449 PF09547 Spore_IV_A: Stage IV 95.3 0.27 5.9E-06 54.5 13.5 139 9-161 7-191 (492)
450 cd04178 Nucleostemin_like Nucl 95.3 0.035 7.5E-07 55.2 6.2 41 123-163 1-43 (172)
451 cd02032 Bchl_like This family 95.3 0.084 1.8E-06 56.4 9.7 65 97-162 115-184 (267)
452 cd01983 Fer4_NifH The Fer4_Nif 95.3 0.12 2.6E-06 45.0 9.2 76 22-141 2-78 (99)
453 KOG1533 Predicted GTPase [Gene 95.1 0.023 5.1E-07 57.6 4.3 67 97-163 96-176 (290)
454 KOG0780 Signal recognition par 95.1 0.042 9.2E-07 59.6 6.4 137 19-163 101-253 (483)
455 KOG3887 Predicted small GTPase 95.1 0.068 1.5E-06 54.4 7.4 112 21-163 29-148 (347)
456 cd01849 YlqF_related_GTPase Yl 95.1 0.025 5.5E-07 55.0 4.5 41 123-163 1-42 (155)
457 KOG2484 GTPase [General functi 95.1 0.021 4.5E-07 62.3 4.0 70 6-109 233-308 (435)
458 PF07015 VirC1: VirC1 protein; 95.0 0.16 3.5E-06 52.3 10.2 64 96-161 82-151 (231)
459 KOG2743 Cobalamin synthesis pr 95.0 0.14 3E-06 53.9 9.6 83 98-190 146-244 (391)
460 KOG4423 GTP-binding protein-li 95.0 0.002 4.4E-08 62.6 -3.4 116 18-163 24-148 (229)
461 cd02117 NifH_like This family 94.9 0.18 3.8E-06 51.9 10.3 66 96-162 115-187 (212)
462 COG0552 FtsY Signal recognitio 94.8 0.036 7.7E-07 59.6 5.1 135 18-162 138-296 (340)
463 cd03702 IF2_mtIF2_II This fami 94.7 0.16 3.5E-06 45.0 8.1 68 378-460 3-70 (95)
464 PRK14493 putative bifunctional 94.7 0.073 1.6E-06 56.9 7.1 23 20-42 2-24 (274)
465 PF06858 NOG1: Nucleolar GTP-b 94.5 0.096 2.1E-06 41.4 5.4 48 114-161 5-58 (58)
466 TIGR03597 GTPase_YqeH ribosome 94.3 0.097 2.1E-06 58.5 7.1 53 109-163 51-103 (360)
467 TIGR01007 eps_fam capsular exo 94.3 0.13 2.8E-06 52.5 7.5 67 96-163 126-193 (204)
468 COG1618 Predicted nucleotide k 94.1 0.84 1.8E-05 44.2 11.9 49 113-163 92-143 (179)
469 cd02040 NifH NifH gene encodes 94.1 0.27 5.9E-06 52.4 10.0 38 96-133 115-153 (270)
470 COG3523 IcmF Type VI protein s 94.1 0.11 2.4E-06 65.2 7.7 66 98-163 174-269 (1188)
471 CHL00072 chlL photochlorophyll 94.0 0.22 4.7E-06 53.9 9.0 64 97-161 115-183 (290)
472 KOG4181 Uncharacterized conser 94.0 0.54 1.2E-05 50.5 11.3 34 7-40 176-209 (491)
473 PF13555 AAA_29: P-loop contai 93.8 0.063 1.4E-06 43.4 3.3 22 21-42 25-46 (62)
474 PF05621 TniB: Bacterial TniB 93.8 0.53 1.2E-05 50.5 11.1 36 8-43 48-85 (302)
475 TIGR01281 DPOR_bchL light-inde 93.8 0.33 7.1E-06 51.8 9.8 66 96-162 114-184 (268)
476 PRK05800 cobU adenosylcobinami 93.7 0.31 6.6E-06 48.3 8.6 138 21-194 3-156 (170)
477 PRK08118 topology modulation p 93.2 0.078 1.7E-06 52.4 3.5 25 20-44 2-26 (167)
478 COG1116 TauB ABC-type nitrate/ 93.1 0.11 2.4E-06 53.8 4.6 19 21-39 31-49 (248)
479 TIGR03499 FlhF flagellar biosy 93.1 0.033 7.2E-07 60.0 0.7 25 18-42 193-217 (282)
480 cd03701 IF2_IF5B_II IF2_IF5B_I 93.0 0.51 1.1E-05 41.8 8.1 68 378-460 3-70 (95)
481 PRK13232 nifH nitrogenase redu 93.0 0.39 8.4E-06 51.5 8.8 66 96-161 115-185 (273)
482 cd03116 MobB Molybdenum is an 92.8 0.31 6.6E-06 47.7 7.0 23 20-42 2-24 (159)
483 PRK12289 GTPase RsgA; Reviewed 92.8 0.16 3.4E-06 56.4 5.6 47 117-163 85-133 (352)
484 PF13207 AAA_17: AAA domain; P 92.8 0.11 2.4E-06 47.9 3.8 23 21-43 1-23 (121)
485 PRK13231 nitrogenase reductase 92.7 1 2.2E-05 48.0 11.4 66 96-161 112-179 (264)
486 PF03205 MobB: Molybdopterin g 92.6 0.12 2.6E-06 49.5 3.7 23 21-43 2-24 (140)
487 PRK13230 nitrogenase reductase 92.6 0.32 6.9E-06 52.3 7.4 37 97-133 116-153 (279)
488 COG1126 GlnQ ABC-type polar am 92.5 0.089 1.9E-06 53.2 2.7 20 20-39 29-48 (240)
489 COG0563 Adk Adenylate kinase a 92.4 0.12 2.6E-06 51.6 3.6 26 20-45 1-26 (178)
490 KOG3022 Predicted ATPase, nucl 92.3 1.1 2.4E-05 47.1 10.4 75 89-163 148-223 (300)
491 cd01130 VirB11-like_ATPase Typ 92.2 0.15 3.2E-06 51.3 4.1 25 18-42 24-48 (186)
492 PRK01889 GTPase RsgA; Reviewed 92.2 0.31 6.7E-06 54.4 6.9 45 119-163 110-155 (356)
493 KOG0082 G-protein alpha subuni 92.1 0.31 6.8E-06 53.4 6.7 67 97-163 194-275 (354)
494 PRK07261 topology modulation p 92.1 0.14 3E-06 50.9 3.6 22 21-42 2-23 (171)
495 cd02019 NK Nucleoside/nucleoti 92.0 0.13 2.8E-06 42.7 2.8 22 21-42 1-22 (69)
496 TIGR00157 ribosome small subun 92.0 0.14 3E-06 54.0 3.7 47 117-163 32-80 (245)
497 PRK09270 nucleoside triphospha 91.9 0.19 4.1E-06 52.4 4.7 35 8-42 22-56 (229)
498 cd03238 ABC_UvrA The excision 91.9 0.14 3E-06 51.1 3.4 24 19-42 21-44 (176)
499 cd01854 YjeQ_engC YjeQ/EngC. 91.8 0.17 3.7E-06 54.7 4.2 45 119-163 76-122 (287)
500 KOG1487 GTP-binding protein DR 91.8 0.17 3.7E-06 52.1 3.8 110 20-163 60-182 (358)
No 1
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-174 Score=1368.48 Aligned_cols=828 Identities=67% Similarity=1.103 Sum_probs=805.7
Q ss_pred CcccCHHHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEee
Q 003305 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
|+.+..++++.+|.+..++||+.+++|+|||||||+++|..++|.|+...+|+.+++|++++||+|||||+++.+++.++
T Consensus 1 Mv~Ftvd~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e 80 (842)
T KOG0469|consen 1 MVAFTVDQVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFE 80 (842)
T ss_pred CccccHHHHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhh
Confidence 78899999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECC
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKi 160 (832)
..+..++.+....+++++.|||||.|||+||.+|+-.|+|+.|||++|||+.+|++.||+.+++||..+++.+++|+|||
T Consensus 81 ~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~ 160 (842)
T KOG0469|consen 81 MSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKM 160 (842)
T ss_pred hhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehh
Confidence 88877777777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHH
Q 003305 161 DRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (832)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (832)
||.++|+..+.+++++.++++++.+|.+++.|.+.++|...+.|..|+|.|+||++||+|++.+||.+|.+||+++..+|
T Consensus 161 DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~km 240 (842)
T KOG0469|consen 161 DRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKM 240 (842)
T ss_pred hHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCcCCCceEecC--CCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHH
Q 003305 241 MERLWGENFFDPATKKWTTKN--TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALM 318 (832)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~ 318 (832)
+.++||+.||++++++|.++. .....+++.|+.++|+|||++++++++...+.+..+|+.+++.+..++....+++|+
T Consensus 241 m~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~Ll 320 (842)
T KOG0469|consen 241 MNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALL 320 (842)
T ss_pred HHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHH
Confidence 999999999999999999765 122367899999999999999999999999999999999999999999888899999
Q ss_pred HHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003305 319 KRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (832)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV 398 (832)
+.+|++|+|...+||++|.-+||||..+|+||...+|.||.+|+.+.+|++||+++|+++||+|+.++.+.|+|++|+||
T Consensus 321 K~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRV 400 (842)
T KOG0469|consen 321 KVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_pred HHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCCcccc
Q 003305 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPI 478 (832)
Q Consensus 399 ~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tgTl~~~~~~~~~~~ 478 (832)
|||++..|+.+++.||||.+|++++.+...|.+..+|||+..++++.++||||+++.|+++++.+|||+++.+ ..+.+
T Consensus 401 FsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e--~AHNm 478 (842)
T KOG0469|consen 401 FSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSE--AAHNM 478 (842)
T ss_pred ecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehh--hhccc
Confidence 9999999999999999999999988777888899999999999999999999999999999999999999988 78899
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEc
Q 003305 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (832)
Q Consensus 479 ~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s 558 (832)
+.++|+.+||+.++||++++.|++||.++|++|++.||.+.+..+|+||++|.|.||||||||+.+|++.|| +|.++.|
T Consensus 479 rvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedhA-~iPlk~s 557 (842)
T KOG0469|consen 479 RVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHA-CIPLKKS 557 (842)
T ss_pred eEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhccc-CCceecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEec
Q 003305 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (832)
Q Consensus 559 ~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (832)
+|.|+||||+.+.++..+.++|+|+||++|++++|+++++.+.|++|..+++|++|.|..+|...|+||-.++++|||||
T Consensus 558 dPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfg 637 (842)
T KOG0469|consen 558 DPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFG 637 (842)
T ss_pred CCeeeeecccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHH
Q 003305 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718 (832)
Q Consensus 639 P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 718 (832)
|+..|+|+++|.++|.+|+++++++++.|||||.++|||+++.++||+|.|.|..+|.|.+|++.+|+++.+|++|+.++
T Consensus 638 Pd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~ 717 (842)
T KOG0469|consen 638 PDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASV 717 (842)
T ss_pred CCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeE
Q 003305 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798 (832)
Q Consensus 719 ~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 798 (832)
+.|+|+|+||+|.|||+||++++|.||++|++|||++.+++...|++++.|+|++|+.|+|||..+|||.|.|+|..||.
T Consensus 718 l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~v 797 (842)
T KOG0469|consen 718 LTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMV 797 (842)
T ss_pred HhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchHHHHHHHHHHHhcCCCC
Q 003305 799 FDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKD 831 (832)
Q Consensus 799 f~~y~~~~~~~~~~~~~a~~~~~~~r~rkGl~~ 831 (832)
|+||+++|+||+|+++..-+++.++|+||||.|
T Consensus 798 FdHws~lpgdp~dp~sk~~~iV~~~RKrkglke 830 (842)
T KOG0469|consen 798 FDHWSILPGDPLDPTSKPGQIVLATRKRKGLKE 830 (842)
T ss_pred eeccccCCCCCCCCCccchHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999976
No 2
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=3.9e-153 Score=1383.49 Aligned_cols=832 Identities=95% Similarity=1.451 Sum_probs=753.0
Q ss_pred CcccCHHHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEee
Q 003305 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
|..++.++|.++|+++++||||+|+||+|||||||+++|++.+|.+.+...|.++++|+.++|++||+|++++.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (843)
T PLN00116 1 MVKFTAEELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
T ss_pred CCccCHHHHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEee
Confidence 78999999999999999999999999999999999999999999998877888889999999999999999999999996
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECC
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKi 160 (832)
.....+.......+++++.|||||||||.||..++.+|++.+|+||+||||.+|++.||+.+|+++...++|+|+|+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~ 160 (843)
T PLN00116 81 MTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
T ss_pred cccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECC
Confidence 32111111111224457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHH
Q 003305 161 DRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (832)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (832)
|+++++++.++++++..++++++++|.++..+..+..+.++|+|..+||.|+|+++||+|++.+|+.+|+.+|+++...+
T Consensus 161 D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l 240 (843)
T PLN00116 161 DRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
T ss_pred cccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999888877655556678999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHH
Q 003305 241 MERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKR 320 (832)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~ 320 (832)
.+++||++||+++++++...+.......+.|++++++|+|+|++.+++.|++++++||++++++++.+|+..+.+++++.
T Consensus 241 ~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~ 320 (843)
T PLN00116 241 MERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKR 320 (843)
T ss_pred HHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHH
Confidence 99999999999888777655411123467899999999999999999999999999999988899999998788999999
Q ss_pred HHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeee
Q 003305 321 VMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (832)
Q Consensus 321 i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~s 400 (832)
++..|+|.+++|||+|++|+|||.+++..++..+|.++.+++...+++.||+++|++|+|||+.++++.|++++|+||||
T Consensus 321 ~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVys 400 (843)
T PLN00116 321 VMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
T ss_pred HHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEe
Confidence 99999999999999999999999998888888777664334444578899999999999999999888887899999999
Q ss_pred eeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCCcccccc
Q 003305 401 GKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRA 480 (832)
Q Consensus 401 G~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tgTl~~~~~~~~~~~~~ 480 (832)
|+|++||.||++|+|++++++++...++|++||.++|++.++|++|+|||||+|.|++++.++++||++.....+.++++
T Consensus 401 GtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~ 480 (843)
T PLN00116 401 GTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKA 480 (843)
T ss_pred eeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccc
Confidence 99999999999999887765544555799999999999999999999999999999998755555998754112456677
Q ss_pred cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCc
Q 003305 481 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDP 560 (832)
Q Consensus 481 ~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p 560 (832)
+.++++|+++++|||.+++|+++|.+||++|.+|||+|++..++|||++|+||||+|||+|++||+++|+++|++++|+|
T Consensus 481 ~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p 560 (843)
T PLN00116 481 MKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDP 560 (843)
T ss_pred cccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCC
Confidence 77755999999999999999999999999999999999997779999999999999999999999999954699999999
Q ss_pred EEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccC
Q 003305 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPE 640 (832)
Q Consensus 561 ~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~ 640 (832)
+|+|||||.++++..+..+.+++|++++++++|++.++.+.|+.+.+...++.+.+...+...|+|+...++++|+|||+
T Consensus 561 ~V~yrETI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~ 640 (843)
T PLN00116 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPE 640 (843)
T ss_pred eEEEEecccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCC
Confidence 99999999998765555567889999999999999988888888876655665555566767799999999999999998
Q ss_pred CCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHh
Q 003305 641 TTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLT 720 (832)
Q Consensus 641 ~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~ 720 (832)
..|+|+|++++.|.+|+++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++.+++|++|+++||++||++
T Consensus 641 ~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~ 720 (843)
T PLN00116 641 TTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLT 720 (843)
T ss_pred CCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999998888888889999999999999999
Q ss_pred cCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEec
Q 003305 721 AKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFD 800 (832)
Q Consensus 721 a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~ 800 (832)
|+|+||||||+|||+||++++|+|++||++|||+|+++++.+++..++|+|++|++|||||+++|||+|+|+|+|+|+|+
T Consensus 721 a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~ 800 (843)
T PLN00116 721 AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFD 800 (843)
T ss_pred CCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEec
Confidence 99999999999999999999999999999999999999987776779999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCchHHHHHHHHHHHhcCCCCC
Q 003305 801 HWDMMSSDPLEPGTQAAQLVADIRKRKGLKDK 832 (832)
Q Consensus 801 ~y~~~~~~~~~~~~~a~~~~~~~r~rkGl~~~ 832 (832)
||++||+|||+++|+|+++|.++||||||+++
T Consensus 801 ~y~~v~~dp~~~~~~a~~~~~~~R~rKGl~~~ 832 (843)
T PLN00116 801 HWDMMSSDPLEAGSQAAQLVADIRKRKGLKEQ 832 (843)
T ss_pred eeEECCCCCCCchhHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999999999999873
No 3
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=2.4e-152 Score=1373.44 Aligned_cols=823 Identities=69% Similarity=1.137 Sum_probs=746.4
Q ss_pred CcccCHHHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEee
Q 003305 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
|..++.+++.++|++++++|||+|+||+|||||||+++|++.+|.+++...|.++++|+.++|++||+|+.++.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (836)
T PTZ00416 1 MVNFTVDQIREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYE 80 (836)
T ss_pred CCccCHHHHHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEee
Confidence 77899999999999999999999999999999999999999999998877888888999999999999999999999886
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECC
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKi 160 (832)
... ....+++++.|||+|||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++...++|+|+|+|||
T Consensus 81 ~~~------~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~ 154 (836)
T PTZ00416 81 HDL------EDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKV 154 (836)
T ss_pred ccc------ccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEECh
Confidence 211 11123347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHH
Q 003305 161 DRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (832)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (832)
|+.+++++.++++++..++++++++|..+..+..+....+.|.|..+||||+|+.+||+|++++|+..|+.+|+++...+
T Consensus 155 D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l 234 (836)
T PTZ00416 155 DRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKM 234 (836)
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHH
Confidence 99999999999999999999999999988766544333456899999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCcCCCceEecC--CCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHH
Q 003305 241 MERLWGENFFDPATKKWTTKN--TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALM 318 (832)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~ 318 (832)
.+++||++||+++++++...+ ......++.|++++++|+|+|++++++.|++++++||+.+++++++++++...+.|+
T Consensus 235 ~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~ 314 (836)
T PTZ00416 235 MERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLL 314 (836)
T ss_pred HHHHhccccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHH
Confidence 999999999988777676543 122245789999999999999999999999999999998889999998755556899
Q ss_pred HHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003305 319 KRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (832)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV 398 (832)
++++++|+|++++|||+|++|+|||.+++..+...++.++.++.....++.||+++|++|+|||+.++++.|++++|+||
T Consensus 315 ~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV 394 (836)
T PTZ00416 315 KAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRV 394 (836)
T ss_pred HHHHHHHhchHHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEE
Confidence 99999999999999999999999999887777766665533333345678999999999999999999998888899999
Q ss_pred eeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCCcccc
Q 003305 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPI 478 (832)
Q Consensus 399 ~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tgTl~~~~~~~~~~~ 478 (832)
|||+|++||.||++|+|++.+++++....+|++||.++|++..+|++|+|||||+|.||+++++++|||++.. .+.++
T Consensus 395 ~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~--~~~~l 472 (836)
T PTZ00416 395 FSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSE--TAHNI 472 (836)
T ss_pred EeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCC--Ccccc
Confidence 9999999999999999887665543333469999999999999999999999999999998667899998776 56677
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEc
Q 003305 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (832)
Q Consensus 479 ~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s 558 (832)
.++.++++|+++++|||.+++|+++|.+||++|.+|||++.++.++|||++|+||||+|||+|++||+++|+ +|++++|
T Consensus 473 ~~i~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~-~vev~~s 551 (836)
T PTZ00416 473 RDMKYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYA-NIDIIVS 551 (836)
T ss_pred cccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhc-CcceEec
Confidence 788775699999999999999999999999999999999999777999999999999999999999999997 8999999
Q ss_pred CcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEec
Q 003305 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (832)
Q Consensus 559 ~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (832)
+|+|+|||||.+.++..+.++.+++|++++++++||++++.+.++.+.+......+.+...+...|+|+...++++|+|+
T Consensus 552 ~P~V~yrETI~~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~ 631 (836)
T PTZ00416 552 DPVVSYRETVTEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFG 631 (836)
T ss_pred CCEEEEEEEecccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeecc
Confidence 99999999999998877777888999999999999999988888887765444444444555568999999999999999
Q ss_pred cCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHH
Q 003305 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718 (832)
Q Consensus 639 P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 718 (832)
|...|+|+++|.+.+.+|+++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++||
T Consensus 632 ~~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~ 711 (836)
T PTZ00416 632 PENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACE 711 (836)
T ss_pred CCCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHH
Confidence 99889999999999999999999999999999999999999999999999999999987777778899999999999999
Q ss_pred HhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeE
Q 003305 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798 (832)
Q Consensus 719 ~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 798 (832)
++|+|+||||||.|||+||++++|+|++||++|||+|+++++.+++..++|+|++|++|||||+++||++|+|+|+|+|+
T Consensus 712 ~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~ 791 (836)
T PTZ00416 712 LTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCV 791 (836)
T ss_pred hhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEE
Confidence 99999999999999999999999999999999999999999887766799999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchHHHHHHHHHHHhcCCCCC
Q 003305 799 FDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKDK 832 (832)
Q Consensus 799 f~~y~~~~~~~~~~~~~a~~~~~~~r~rkGl~~~ 832 (832)
|+||++||+||||++|+|++||+++||||||+++
T Consensus 792 F~~y~~vp~dp~~~~~~a~~~~~~~R~rKGl~~~ 825 (836)
T PTZ00416 792 FDHWQVVPGDPLEPGSKANEIVLSIRKRKGLKPE 825 (836)
T ss_pred eccEEECCCCCCCchhHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999853
No 4
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-139 Score=1133.09 Aligned_cols=816 Identities=40% Similarity=0.717 Sum_probs=758.4
Q ss_pred cccCHHHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc-cCCceEeecCcccccccCceeeeeeEEEEee
Q 003305 2 VKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
+.|+.+++..+|+++..+|||+++||-+||||+|.+.|...++.--+. .-...+++|....|++||++|++..+++...
T Consensus 111 T~y~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~ 190 (971)
T KOG0468|consen 111 TVYDLEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLS 190 (971)
T ss_pred hhhhHHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEe
Confidence 358899999999999999999999999999999999999887732211 0112479999999999999999999988765
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECC
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKi 160 (832)
..+++++.+|++|||||++|+.|+..+++.+|+++||||+.+|++.+|+.+++++.+.++|+++|+||+
T Consensus 191 -----------D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKi 259 (971)
T KOG0468|consen 191 -----------DSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKV 259 (971)
T ss_pred -----------cCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehh
Confidence 246679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccC-CChHH
Q 003305 161 DRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG-VDESK 239 (832)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~-i~~~~ 239 (832)
||+++|++..|.++|.+++.+++++|..+..+..+ ....++|..|||+|+|+..||||++.+||.+|...++ ++...
T Consensus 260 DRLilELkLPP~DAY~KLrHii~~iN~~is~~s~~--~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~ 337 (971)
T KOG0468|consen 260 DRLILELKLPPMDAYYKLRHIIDEINNLISTFSKD--DNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDD 337 (971)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcchhhhcccc--cccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhh
Confidence 99999999999999999999999999988877544 2345899999999999999999999999999999887 88899
Q ss_pred HHHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHH
Q 003305 240 MMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMK 319 (832)
Q Consensus 240 l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~ 319 (832)
+..++||+.||+.+|.+|++++... ...++|++|||+|+|+++..+....++.+...|.++++.++.++++.+.+.|++
T Consensus 338 Fa~RLWGdvYf~~ktrkF~kk~~~~-~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~ 416 (971)
T KOG0468|consen 338 FAKRLWGDVYFHSKTRKFVKKPPDG-SGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLR 416 (971)
T ss_pred hhhhhhccccccccccccccCCCCC-cccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHH
Confidence 9999999999999999998876321 346799999999999999999888788899999999999999999999999999
Q ss_pred HHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeee
Q 003305 320 RVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVF 399 (832)
Q Consensus 320 ~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~ 399 (832)
-+.++|+.....+.|++++++|||.+....++...|.|+.+....+.+..|++++|++.++.|+++..+.-.|.+|+||+
T Consensus 417 lvc~~ffg~~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~ 496 (971)
T KOG0468|consen 417 LVCKSFFGIESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVY 496 (971)
T ss_pred HHHHHhccchhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeee
Confidence 99999999999999999999999999888888888888777666778899999999999999999988877889999999
Q ss_pred eeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCC-Ccccc
Q 003305 400 SGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV-DAHPI 478 (832)
Q Consensus 400 sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tgTl~~~~~~-~~~~~ 478 (832)
||+++.|+.|.++|+|++....+++....|++++++.+++..+|.+|+||+++.|.|+++.+.+|.|+++.+.. ....|
T Consensus 497 Sg~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiF 576 (971)
T KOG0468|consen 497 SGQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIF 576 (971)
T ss_pred ecceeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeec
Confidence 99999999999999999887777888889999999999999999999999999999999999999999876532 34568
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEc
Q 003305 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (832)
Q Consensus 479 ~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s 558 (832)
++++|.+.|+++++++|.+|++++||.+||++.++.+|.+....+|+||++|.|.|||+|++++++||+-|+ .|+++++
T Consensus 577 rpl~~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~ys-eieikva 655 (971)
T KOG0468|consen 577 RPLKFNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSYS-EIEIKVA 655 (971)
T ss_pred cchhcCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHHh-hhceeec
Confidence 899998999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEec
Q 003305 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (832)
Q Consensus 559 ~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (832)
+|.|.|.||+.++++..|..+++++.|+|.|.+|||+..+.+.|++|........++..+.+...|+||..++++||+||
T Consensus 656 DPvv~F~Et~vetssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFg 735 (971)
T KOG0468|consen 656 DPVVRFCETVVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFG 735 (971)
T ss_pred CceeEEEEeeecccchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccC
Confidence 99999999999999999999999999999999999999999999998876666777888889999999999999999999
Q ss_pred cCCCCCceEEeccc----cccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHH
Q 003305 639 PETTGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 714 (832)
Q Consensus 639 P~~~g~~~~~~~~~----g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 714 (832)
|+..|+|+++|++- ..+.+..++++|++||||++++||||++|+++|+|+|.|+.+.++..+++++|++++||++|
T Consensus 736 pd~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~ 815 (971)
T KOG0468|consen 736 PDYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVA 815 (971)
T ss_pred CCCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHH
Confidence 99999999999983 45678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCcee
Q 003305 715 YASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAF 794 (832)
Q Consensus 715 ~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~ 794 (832)
+.||+.|.|+||||+|.|||++|.+.+..|+.+|++|||+|....+..|++.+.|+|++|+.|+|||.++||..|+|+|.
T Consensus 816 YsafL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~ 895 (971)
T KOG0468|consen 816 YSAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAF 895 (971)
T ss_pred HHHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEecceeecCCCCCCC------------chHHHHHHHHHHHhcCCCCC
Q 003305 795 PQCVFDHWDMMSSDPLEP------------GTQAAQLVADIRKRKGLKDK 832 (832)
Q Consensus 795 ~~~~f~~y~~~~~~~~~~------------~~~a~~~~~~~r~rkGl~~~ 832 (832)
+++.|.||++||+||+|+ +.+|++++-++||||||++|
T Consensus 896 C~~vF~HW~~VPGDpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGlsed 945 (971)
T KOG0468|consen 896 CLSVFDHWRIVPGDPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGLSED 945 (971)
T ss_pred HHHhhhhcccCCCCccccccccccCCCCCcchhHHHHHHHhhhhcccccc
Confidence 999999999999999985 56999999999999999986
No 5
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-126 Score=1104.66 Aligned_cols=666 Identities=36% Similarity=0.538 Sum_probs=562.2
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceE----eecCcccccccCceeeeeeEEEEeeccchhhccccC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR----MTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~----~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (832)
.+++|||+|+||+|||||||+++||+++|.+++ +|+++ ++|++++|++|||||.++.+++.|.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k--~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~----------- 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISK--IGEVHDGAATMDWMEQEQERGITITSAATTLFWK----------- 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCC--CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-----------
Confidence 678999999999999999999999999999998 78766 9999999999999999999999996
Q ss_pred cCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCH
Q 003305 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~ 171 (832)
.++.|||||||||+||..|+.++++++|+||+|+||++|+++||+.+|++|.++++|+++|+|||||. +++.
T Consensus 74 ----~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~----~a~~ 145 (697)
T COG0480 74 ----GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL----GADF 145 (697)
T ss_pred ----CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc----ccCh
Confidence 14999999999999999999999999999999999999999999999999999999999999999999 6663
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003305 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (832)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (832)
....+.++..+.. .|...|+|+++. +.|| +|+..+..+.|++
T Consensus 146 ~~~~~~l~~~l~~------------------~~~~v~~pIg~~~~f~g~----------------idl~~~~~~~~~~-- 189 (697)
T COG0480 146 YLVVEQLKERLGA------------------NPVPVQLPIGAEEEFEGV----------------IDLVEMKAVAFGD-- 189 (697)
T ss_pred hhhHHHHHHHhCC------------------CceeeeccccCccccCce----------------eEhhhcCeEEEcC--
Confidence 3333333332221 122335566552 4555 5566666777763
Q ss_pred cCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc
Q 003305 250 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA 328 (832)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (832)
.....|...|. ...+...+-+.++++++++.|++++++||++ .+++.+++. +.|++.++ ..++|+
T Consensus 190 --~~~~~~~~ip~-------~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g--~e~~~~~i~---~~i~~~~~~~~~~pv 255 (697)
T COG0480 190 --GAKYEWIEIPA-------DLKEIAEEAREKLLEALAEFDEELMEKYLEG--EEPTEEEIK---KALRKGTIAGKIVPV 255 (697)
T ss_pred --CcccceeeCCH-------HHHhHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCccHHHHH---HHHHHhhhccceeeE
Confidence 11112433331 1112222344688999999999999999998 678888876 56666655 456664
Q ss_pred ----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCcccccee-eccCCCCCeEEEEEEeeecCCCCcceeeee
Q 003305 329 ----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAI-RNCDPNGPLMLYVSKMIPASDKGRFFAFGR 397 (832)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~va~VfK~~~~~~~g~~l~~~R 397 (832)
++.|||+|++|||+|.+.+.+. |..+++....+ ..+++++|++|+|||+..+++.|. ++|+|
T Consensus 256 l~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~------g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~-l~~~R 328 (697)
T COG0480 256 LCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIK------GDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK-LTFVR 328 (697)
T ss_pred EeeecccCCcHHHHHHHHHHHCCChhhccccc------ccCCccccchhcccCCCCCceEEEEEEeEecCCCCe-EEEEE
Confidence 8999999999999999987443 22222212222 244568999999999999999988 99999
Q ss_pred eeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcc
Q 003305 398 VFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAH 476 (832)
Q Consensus 398 V~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~ 476 (832)
||||+|++|+.+++.+ .+++ +||++|+.|+|.+++++++++|||||++.||+++ .+| |+|+.. .+.
T Consensus 329 vysGtl~~G~~v~n~~----~~~~-----erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~--~tGdTl~~~~--~~v 395 (697)
T COG0480 329 VYSGTLKSGSEVLNST----KGKK-----ERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA--TTGDTLCDEN--KPV 395 (697)
T ss_pred EeccEEcCCCEEEeCC----CCcc-----EEEEEEEEccCCceeecccccCccEEEEEccccc--ccCCeeecCC--Ccc
Confidence 9999999999999643 3333 8999999999999999999999999999999997 677 999876 567
Q ss_pred cccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeE
Q 003305 477 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEI 555 (832)
Q Consensus 477 ~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v 555 (832)
.+..+.++ +||++++|+|++++|++||.+||++|++|||+++++.| ||||++|+|||||||||+++||+++| ||++
T Consensus 396 ~~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~--~Vev 472 (697)
T COG0480 396 ILESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREF--GVEV 472 (697)
T ss_pred ccccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhc--CceE
Confidence 88999998 99999999999999999999999999999999999997 99999999999999999999999999 9999
Q ss_pred EEcCcEEeEeeeccccccceEe----eecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhcc
Q 003305 556 IKSDPVVSFRETVLEKSCRTVM----SKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLA 631 (832)
Q Consensus 556 ~~s~p~V~yrEti~~~~~~~~~----~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 631 (832)
++++|+|+|||||...+..... +.++++|+++++.+||++
T Consensus 473 ~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~------------------------------------ 516 (697)
T COG0480 473 EVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLE------------------------------------ 516 (697)
T ss_pred EecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCC------------------------------------
Confidence 9999999999999988742211 123444455555554444
Q ss_pred CeEEEeccCCCC-CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHH
Q 003305 632 KKIWCFGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTA 710 (832)
Q Consensus 632 ~~i~~~~P~~~g-~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~ 710 (832)
.| .+.|.+.+.|+.++.++++++.+||++|+++|||+||||+|++|+|+|+++|.+. ++..+|.+|+
T Consensus 517 ----------~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vd--ss~~af~~a~ 584 (697)
T COG0480 517 ----------DGSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVD--SSEMAFKIAA 584 (697)
T ss_pred ----------CCcceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceEeeEEEEEcCccccCC--CCHHHHHHHH
Confidence 33 5778888888889999999999999999999999999999999999999999732 3445788999
Q ss_pred HHHHHHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCC
Q 003305 711 RRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATS 790 (832)
Q Consensus 711 ~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~ 790 (832)
++||++|+++|+|+||||||+|+|++|++++|+|+++|++|||+|++++...++.+++|+|++|++|||||+++|||+|+
T Consensus 585 ~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~ 664 (697)
T COG0480 585 SLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQ 664 (697)
T ss_pred HHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEEEEEechHHhccchhhhHhhcC
Confidence 99999999999999999999999999999999999999999999999998866678999999999999999999999999
Q ss_pred CceeeeeEecceeecCCCCCCCchHHHHHHHHHHHhcCC
Q 003305 791 GQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 829 (832)
Q Consensus 791 G~~~~~~~f~~y~~~~~~~~~~~~~a~~~~~~~r~rkGl 829 (832)
|+|.|+|+|+||+++|.+ +|++++.++|+|||+
T Consensus 665 Gra~~~m~f~~y~~vp~~------~a~~ii~~~~~~~~~ 697 (697)
T COG0480 665 GRASFSMEFDHYEEVPSS------VAEEIIAKRRKRKGL 697 (697)
T ss_pred CceeEEEEecccEeCCHH------HHHHHHHHhhhhcCC
Confidence 999999999999999965 699999999999986
No 6
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.5e-125 Score=1132.13 Aligned_cols=710 Identities=44% Similarity=0.726 Sum_probs=621.1
Q ss_pred HHHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchh
Q 003305 6 AEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (832)
Q Consensus 6 ~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (832)
.+++.++|.+.+++|||+|+||+|||||||+++|++.+|.+.+...|..+++|+.++|++||||++++.+++.|..
T Consensus 7 ~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~---- 82 (731)
T PRK07560 7 VEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY---- 82 (731)
T ss_pred HHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe----
Confidence 5788999999999999999999999999999999999999988767778899999999999999999999998852
Q ss_pred hccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccc
Q 003305 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL 165 (832)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~ 165 (832)
+++++.|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+...
T Consensus 83 --------~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 83 --------EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIK 154 (731)
T ss_pred --------cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcc
Confidence 234789999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCHHHHHHHHHHHHHHhhhhhhhccCCCC-CCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHh
Q 003305 166 ELQVDGEEAYQTFSRVVENANVIMATYEDPLL-GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERL 244 (832)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~ 244 (832)
+++..++++++++.+++++++.++..+..+.. ..+.+.|..++|.|+|+.++|+|.++.+.... +
T Consensus 155 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~-----~--------- 220 (731)
T PRK07560 155 ELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTG-----I--------- 220 (731)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhC-----C---------
Confidence 88889999999999999999988876543221 23457788899999999999999876432111 0
Q ss_pred hcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhc
Q 003305 245 WGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQT 324 (832)
Q Consensus 245 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 324 (832)
.| .+|++. |+++ +.+++ .+
T Consensus 221 -------------------------~~--------~~l~e~-----------~~~~-----~~~~l------------~~ 239 (731)
T PRK07560 221 -------------------------KF--------KDIIDY-----------YEKG-----KQKEL------------AE 239 (731)
T ss_pred -------------------------CH--------HHHHHH-----------HhcC-----CHHHH------------Hh
Confidence 01 022222 2111 11222 35
Q ss_pred cccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeee
Q 003305 325 WLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVS 404 (832)
Q Consensus 325 ~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~ 404 (832)
|+|+.++|||+|++|+|||.+++.++...++.+...++....++.||+++|++|+|||+.++++.|. ++|+|||||+|+
T Consensus 240 ~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~-va~~RV~sGtL~ 318 (731)
T PRK07560 240 KAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGE-VATGRVFSGTLR 318 (731)
T ss_pred hccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCe-EEEEEEEEeEEc
Confidence 6999999999999999999998887777777654333333467789999999999999999999886 999999999999
Q ss_pred CCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccccccccc
Q 003305 405 TGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKF 483 (832)
Q Consensus 405 ~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~ 483 (832)
+||.|++.+. +.+ ++|++|+.++|++..++++|+|||||+|.|++++ .+| ||++.. ...+++++.+
T Consensus 319 ~Gd~v~~~~~----~~~-----~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~--~~GdtL~~~~--~~~~~~~~~~ 385 (731)
T PRK07560 319 KGQEVYLVGA----KKK-----NRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDA--RAGETVVSVE--DMTPFESLKH 385 (731)
T ss_pred CCCEEEEcCC----CCc-----eEeheehhhhcCCCceeeeECCCCEEEEEccccc--ccCCEEeCCC--cccccccccc
Confidence 9999997642 222 7999999999999999999999999999999887 456 998776 5667777754
Q ss_pred CCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCcEE
Q 003305 484 SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVV 562 (832)
Q Consensus 484 ~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p~V 562 (832)
.|+|+++++|+|.+++|.+||.+||++|++|||+|+|.++ +|||++|+||||+|||++++||+++| ++++++++|+|
T Consensus 386 ~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~--~vev~~~~p~V 463 (731)
T PRK07560 386 ISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY--GIEVVTSEPIV 463 (731)
T ss_pred CCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh--CCceEecCCEE
Confidence 4599999999999999999999999999999999999998 89999999999999999999999999 99999999999
Q ss_pred eEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhh---hcCCchhccCeEEEecc
Q 003305 563 SFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSE---EFGWDKDLAKKIWCFGP 639 (832)
Q Consensus 563 ~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~---~~~~~~~~~~~i~~~~P 639 (832)
+|||||.+.+.. +...++++|++++++++|++.+..+.++.|.....++.+.+ .+|.. ++||+..+++++|+++
T Consensus 464 ~yrETI~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~~~~i~~~~- 540 (731)
T PRK07560 464 VYRETVRGKSQV-VEGKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEA-KILREKLIEAGMDKDEAKRVWAIY- 540 (731)
T ss_pred EEEEecccCccc-eEEECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHH-HHHHHhhhhcCCchhhhhceeecc-
Confidence 999999988631 23457889999999999999988888888776544444443 55554 8999999999999983
Q ss_pred CCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHH
Q 003305 640 ETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQL 719 (832)
Q Consensus 640 ~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~ 719 (832)
++|+|+|.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++||+
T Consensus 541 ---~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~ 617 (731)
T PRK07560 541 ---NGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAML 617 (731)
T ss_pred ---CCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999888888889999999999999999
Q ss_pred hcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEe
Q 003305 720 TAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVF 799 (832)
Q Consensus 720 ~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f 799 (832)
+|+|+||||||+|||+||++++|+|+++|++|||+|++++..+ +.++|+|++|++|||||+++|||+|+|+|+|+|+|
T Consensus 618 ~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f 695 (731)
T PRK07560 618 TAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEG--DMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEF 695 (731)
T ss_pred hCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCC--CcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEe
Confidence 9999999999999999999999999999999999999987643 57999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCchHHHHHHHHHHHhcCCCCC
Q 003305 800 DHWDMMSSDPLEPGTQAAQLVADIRKRKGLKDK 832 (832)
Q Consensus 800 ~~y~~~~~~~~~~~~~a~~~~~~~r~rkGl~~~ 832 (832)
+||++||++ +|+++++++||||||+++
T Consensus 696 ~~y~~v~~~------~~~~ii~~~r~rKGl~~~ 722 (731)
T PRK07560 696 AGFEPVPDS------LQLDIVRQIRERKGLKPE 722 (731)
T ss_pred ccceeCCHH------HHHHHHHHHHhhCCCCCC
Confidence 999999975 599999999999999875
No 7
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=5.8e-122 Score=1098.17 Aligned_cols=711 Identities=39% Similarity=0.668 Sum_probs=612.9
Q ss_pred HHHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchh
Q 003305 6 AEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (832)
Q Consensus 6 ~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (832)
.+++.++|++.+++|||+|+||.|||||||+++|++.+|.+.+...|..+++|+.++|++||+|+.++.+++.|.
T Consensus 6 ~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~----- 80 (720)
T TIGR00490 6 IDKIKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE----- 80 (720)
T ss_pred HHHHHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe-----
Confidence 578899999999999999999999999999999999999998876777788999999999999999988776553
Q ss_pred hccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccc
Q 003305 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL 165 (832)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~ 165 (832)
.++++++++|||||||.+|..++.++++.+|++|+|+|+.+|+..+|+.+|+++...++|+++|+||||+...
T Consensus 81 -------~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 81 -------YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLIN 153 (720)
T ss_pred -------ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccc
Confidence 1335899999999999999999999999999999999999999999999999998999999999999999977
Q ss_pred cccCCHHHHHHHHHHHHHHhhhhhhhccCCC-CCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHh
Q 003305 166 ELQVDGEEAYQTFSRVVENANVIMATYEDPL-LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERL 244 (832)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~ 244 (832)
+++..+++++.++.+++..++..+..+..+. .+.+.+.|..+++.|+|+..+|+|++++|.... ++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~-----~~~------- 221 (720)
T TIGR00490 154 ELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTG-----IGF------- 221 (720)
T ss_pred hhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcC-----CCH-------
Confidence 7788899999999999999988875432111 123457788899999999999999877542111 100
Q ss_pred hcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhc
Q 003305 245 WGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQT 324 (832)
Q Consensus 245 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 324 (832)
++ +.+++.. .. .++ +.+
T Consensus 222 -----------------------------------~~------------l~~~~~~--~~--~~~------------~~~ 238 (720)
T TIGR00490 222 -----------------------------------KD------------IYKYCKE--DK--QKE------------LAK 238 (720)
T ss_pred -----------------------------------HH------------HHHHHHh--cc--HHH------------Hhh
Confidence 11 1222221 00 111 125
Q ss_pred cccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeee
Q 003305 325 WLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVS 404 (832)
Q Consensus 325 ~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~ 404 (832)
|+|++++|||+|++|+|||.+++.++++.++.++.+++....++.||+++|++|+|||+.++++.|. ++|+|||||+|+
T Consensus 239 ~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~-ia~~RV~sGtL~ 317 (720)
T TIGR00490 239 KSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGE-VAVGRLYSGTIR 317 (720)
T ss_pred hhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcE-EEEEEEEeCEEc
Confidence 8999999999999999999988777766666543222223467789999999999999999998887 999999999999
Q ss_pred CCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccccccccc
Q 003305 405 TGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKF 483 (832)
Q Consensus 405 ~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~ 483 (832)
+||.|++.+++ .+ ++|.+|+.++|.+..++++|.|||||+|.|++++ .+| |||+... ...+++++.+
T Consensus 318 ~G~~l~~~~~~----~~-----~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~--~~GdtL~~~~~-~~~~~~~~~~ 385 (720)
T TIGR00490 318 PGMEVYIVDRK----AK-----ARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDA--VAGETICTTVE-NITPFESIKH 385 (720)
T ss_pred CCCEEEEcCCC----Ce-----eEeeEEEEeccCCccCccEECCCCEEEEECcccc--ccCceeecCCc-ccccCccccc
Confidence 99999976432 22 7999999999999999999999999999999987 456 9987651 1234566654
Q ss_pred CCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCcEE
Q 003305 484 SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVV 562 (832)
Q Consensus 484 ~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p~V 562 (832)
.++|+++++|+|++++|+++|.++|++|++|||+|++.++ +|||++|+||||+|||+|++||+++| ++++++++|+|
T Consensus 386 ~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~--~vev~~~~P~V 463 (720)
T TIGR00490 386 ISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY--GLDVETSPPIV 463 (720)
T ss_pred CCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh--CCceeecCCEE
Confidence 4599999999999999999999999999999999999997 89999999999999999999999999 99999999999
Q ss_pred eEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCC-CCChhHHHHHhhhhcCCchhccCeEEEeccCC
Q 003305 563 SFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGP-RDDPKARSKILSEEFGWDKDLAKKIWCFGPET 641 (832)
Q Consensus 563 ~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~-~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~ 641 (832)
+|||||.+.++. ...+.+++|++++++++|++..+.+.|++|.++. ....+.+..+| ..+||+..+++++|+|+
T Consensus 464 ~YrETi~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~--- 538 (720)
T TIGR00490 464 VYRETVTGTSPV-VEGKSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLL-IEAGMDSEEAARVEEYY--- 538 (720)
T ss_pred EEEEeccccccc-eEEEcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHH-HhcCCchhhhcCEEEec---
Confidence 999999988752 1234477899999999999999888888887642 23445566677 56999999999999996
Q ss_pred CCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhc
Q 003305 642 TGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 721 (832)
Q Consensus 642 ~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a 721 (832)
++|.|+|.+.|+.+++++++||++||+||+++||||||||+||+|+|+|+++|.|+.++..++|++|+++||++||++|
T Consensus 539 -~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a 617 (720)
T TIGR00490 539 -EGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQA 617 (720)
T ss_pred -CCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999999999999999999999999999999999977777777899999999999999999
Q ss_pred CCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecc
Q 003305 722 KPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDH 801 (832)
Q Consensus 722 ~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~ 801 (832)
+|+||||||+|||+||++++|+|++||++|||+|++++... +.++|+|++|++|||||+++||++|+|+|+|+|+|+|
T Consensus 618 ~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~ 695 (720)
T TIGR00490 618 KPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEG--DMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAG 695 (720)
T ss_pred CCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCC--CcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecc
Confidence 99999999999999999999999999999999999887433 5799999999999999999999999999999999999
Q ss_pred eeecCCCCCCCchHHHHHHHHHHHhcCCCCC
Q 003305 802 WDMMSSDPLEPGTQAAQLVADIRKRKGLKDK 832 (832)
Q Consensus 802 y~~~~~~~~~~~~~a~~~~~~~r~rkGl~~~ 832 (832)
|++||++ ++++++.++||||||+++
T Consensus 696 y~~vp~~------~~~~ii~~~r~rkgl~~~ 720 (720)
T TIGR00490 696 FELVPQN------LQQEFVMEVRKRKGLKLE 720 (720)
T ss_pred cccCCHH------HHHHHHHHHHhhcCCCCC
Confidence 9999976 599999999999999985
No 8
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-124 Score=1011.51 Aligned_cols=661 Identities=26% Similarity=0.402 Sum_probs=567.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
.++|||+|++|.|+||||+++++||++|.+... ..|....+|+.+.|++|||||++..+++.|.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~-------------- 102 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR-------------- 102 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--------------
Confidence 579999999999999999999999999988662 1222468999999999999999999999997
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHH
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~ 174 (832)
+++|||||||||.||.-|+++|+++.||||+|+|++.|++.||..+|+|+.++++|.|.|+|||||. ++++..+
T Consensus 103 --~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm----Ga~~~~~ 176 (721)
T KOG0465|consen 103 --DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM----GASPFRT 176 (721)
T ss_pred --cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc----CCChHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 9985544
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhcc-C-CChHHHHHHhhcCcccCc
Q 003305 175 YQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKF-G-VDESKMMERLWGENFFDP 252 (832)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~-~-i~~~~l~~~~w~~~~~~~ 252 (832)
... ++..+.. .|...++|+++.- +| | +|+...++.+|...-
T Consensus 177 l~~-------i~~kl~~-----------~~a~vqiPig~e~----------------~f~GvvDlv~~kai~~~g~~--- 219 (721)
T KOG0465|consen 177 LNQ-------IRTKLNH-----------KPAVVQIPIGSES----------------NFKGVVDLVNGKAIYWDGEN--- 219 (721)
T ss_pred HHH-------HHhhcCC-----------chheeEccccccc----------------cchhHHhhhhceEEEEcCCC---
Confidence 333 3333321 3455588887641 22 2 788888888885321
Q ss_pred CCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc---
Q 003305 253 ATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA--- 328 (832)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 328 (832)
...+... +.+........+-+.+|+|.+++.|+++.+.||++ .+++.++++ .+++++++ +.|+||
T Consensus 220 -g~~i~~~-----eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee--~~ps~~~l~---~aIRr~Ti~r~fvPVl~G 288 (721)
T KOG0465|consen 220 -GEIVRKD-----EIPEDLEELAEEKRQALIETLADVDETLAEMFLEE--EEPSAQQLK---AAIRRATIKRSFVPVLCG 288 (721)
T ss_pred -CceeEec-----cCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcc--CCCCHHHHH---HHHHHHHhhcceeeEEec
Confidence 1122222 34555666677788899999999999999999998 678888886 67888877 789997
Q ss_pred -------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCC-CeEEEEEEeeecCCCCcceeeeeeee
Q 003305 329 -------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNG-PLMLYVSKMIPASDKGRFFAFGRVFS 400 (832)
Q Consensus 329 -------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~va~VfK~~~~~~~g~~l~~~RV~s 400 (832)
+|+|||+|++|||||.|..++.+.+-.+ +++ ++....+++. ||+|++||+..+++ |+ ++|+|||+
T Consensus 289 SAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~---~~e--kv~l~~~~d~~Pfv~LAFKle~g~f-Gq-LTyvRvYq 361 (721)
T KOG0465|consen 289 SALKNKGVQPLLDAVVDYLPSPSEVENYALNKETN---SKE--KVTLSPSRDKDPFVALAFKLEEGRF-GQ-LTYVRVYQ 361 (721)
T ss_pred hhhcccCcchHHHHHHHhCCChhhhcccccccCCC---Ccc--ceEeccCCCCCceeeeEEEeeecCc-cc-eEEEEEee
Confidence 8999999999999999998876652111 121 3444444444 99999999999988 87 99999999
Q ss_pred eeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccccc
Q 003305 401 GKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIR 479 (832)
Q Consensus 401 G~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~ 479 (832)
|+|++||.+| |.+++++ +|+.+|+.||+..+++|+++.||||||+.|++. .+| |+++... ....+.
T Consensus 362 G~L~kG~~iy----N~rtgKK-----vrv~RL~rmHa~~medV~~v~AG~I~alfGidc---asGDTftd~~~-~~~~m~ 428 (721)
T KOG0465|consen 362 GTLSKGDTIY----NVRTGKK-----VRVGRLVRMHANDMEDVNEVLAGDICALFGIDC---ASGDTFTDKQN-LALSME 428 (721)
T ss_pred eeecCCcEEE----ecCCCce-----eEhHHHhHhcccccchhhhhhccceeeeecccc---ccCceeccCcc-ccceee
Confidence 9999999999 6667766 899999999999999999999999999999954 577 9998741 456777
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEc
Q 003305 480 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (832)
Q Consensus 480 ~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s 558 (832)
.+..| +||+++||+|.+..|.+++.+||.++.+|||||++..| |+||++|+|||||||||..+||+++| |+++.+|
T Consensus 429 si~vP-ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy--~~~~~~G 505 (721)
T KOG0465|consen 429 SIHIP-EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREY--KVDAELG 505 (721)
T ss_pred eeecC-CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHh--CCccccC
Confidence 88776 99999999999999999999999999999999999999 99999999999999999999999999 9999999
Q ss_pred CcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEec
Q 003305 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (832)
Q Consensus 559 ~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (832)
+|+|+|||||..++++ .+.|++ |+|+. +||+- .+-.++
T Consensus 506 kp~VayRETi~~~~~f------~~~hKk----------------qSgG~--------------gqy~k------v~g~~e 543 (721)
T KOG0465|consen 506 KPQVAYRETITSPVEF------DYTHKK----------------QSGGA--------------GQYGK------VEGVIE 543 (721)
T ss_pred CceeeehhhcCCcccc------eeeecc----------------ccCCC--------------ccccc------eeeEEe
Confidence 9999999999988744 344655 77775 67774 122466
Q ss_pred cCCCC---CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHH
Q 003305 639 PETTG---PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVI 714 (832)
Q Consensus 639 P~~~g---~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~ 714 (832)
|-+.+ ..+|.+.+.|++.|.++++++++||.++|+.|||.|+|+.|+++.|.||.+|. ||++.+ |+.|++.|+
T Consensus 544 pl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~ela---f~~at~~a~ 620 (721)
T KOG0465|consen 544 PLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELA---FMKATRNAF 620 (721)
T ss_pred ecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHH---HHHHHHHHH
Confidence 64433 35799999999999999999999999999999999999999999999999998 887775 558999999
Q ss_pred HHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCcee
Q 003305 715 YASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAF 794 (832)
Q Consensus 715 ~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~ 794 (832)
++||.+|+|+||||||.|||++|+|++|.|+++|++|+|.|.+.+..+ ++++|.|.+||.+||||+++|||+|+|+|.
T Consensus 621 r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~--~~~ti~A~VPL~~mfgYss~LRslTqGkge 698 (721)
T KOG0465|consen 621 REAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSE--DYKTIKAEVPLNEMFGYSSELRSLTQGKGE 698 (721)
T ss_pred HHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCC--ceEEEEecccHHHHhhhhhhhhhhhcCcce
Confidence 999999999999999999999999999999999999999999988766 599999999999999999999999999999
Q ss_pred eeeEecceeecCCCCCCCchHHHHHHH
Q 003305 795 PQCVFDHWDMMSSDPLEPGTQAAQLVA 821 (832)
Q Consensus 795 ~~~~f~~y~~~~~~~~~~~~~a~~~~~ 821 (832)
|+|+|++|+++|.+. +.+++.
T Consensus 699 ftMEys~y~p~~~~v------q~~~~~ 719 (721)
T KOG0465|consen 699 FTMEYSRYSPVPPDV------QDQLVH 719 (721)
T ss_pred EEEeecccCCCchHH------HHHhhc
Confidence 999999999999985 666654
No 9
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-122 Score=1016.80 Aligned_cols=789 Identities=37% Similarity=0.657 Sum_probs=666.2
Q ss_pred cccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
+..+.+|||++++|+|||||||.++|+..+|.|+.+.+|+.+++|++++|+.||||++++.+++...
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~------------- 70 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHK------------- 70 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccC-------------
Confidence 4567899999999999999999999999999999999999999999999999999999999997665
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHH
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (832)
++.+||||+|||+||.+++.+|.+.+|+|+++||+.+|++.||..+++|++..+..+++|+|||||++.|++++|.+
T Consensus 71 ---~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~e 147 (887)
T KOG0467|consen 71 ---DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQE 147 (887)
T ss_pred ---ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCC-----------CCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHH
Q 003305 174 AYQTFSRVVENANVIMATYEDPL-----------LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMME 242 (832)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~ 242 (832)
+|.++-++++++|..+.+|.... -..+.|.|.++||.|+++.+||+|.+++||++|.+|.+.+...+.+
T Consensus 148 a~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k 227 (887)
T KOG0467|consen 148 AYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLK 227 (887)
T ss_pred HHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhh
Confidence 99999999999999987652110 0136799999999999999999999999999999999999999999
Q ss_pred HhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHH-HhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHH
Q 003305 243 RLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINT-CMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRV 321 (832)
Q Consensus 243 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~-~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i 321 (832)
.+||++|++++++++.....-+ ..+++|.+++|+|+|++|+. +.+.|.+.+++....+|+.+-+++++ .++.++
T Consensus 228 ~lwgd~y~~~ktk~I~~~~~~~-grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~----~ll~~i 302 (887)
T KOG0467|consen 228 FLWGDRYIDPKTKRICEGKKLK-GRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLR----NLLDAI 302 (887)
T ss_pred hhccceeecchhhhhhcccCcc-cCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHH----HHHHHH
Confidence 9999999999987665443211 33899999999999999995 45568899999999999999888885 789999
Q ss_pred HhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCC---CccccceeeccCCCCCeEEEEEEeeecCCCC----ccee
Q 003305 322 MQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPL---DDQYANAIRNCDPNGPLMLYVSKMIPASDKG----RFFA 394 (832)
Q Consensus 322 ~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g----~~l~ 394 (832)
|++|+|+.++.|-+++..+|+|++.+..+...+...+. +.+...+.+.|++++|.++||.|+...+.+. ++++
T Consensus 303 m~~wLPls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~ 382 (887)
T KOG0467|consen 303 MSTWLPLSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLA 382 (887)
T ss_pred HHhhcccccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhhee
Confidence 99999999999999999999999999999888765421 1123455677899999999999998755332 2589
Q ss_pred eeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCC
Q 003305 395 FGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVD 474 (832)
Q Consensus 395 ~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tgTl~~~~~~~ 474 (832)
|+||||||++.|+.+|+.++ .+...+.+...+|.++|+++|++..+.+++++||+++|.| -..+.+++|||+.. .
T Consensus 383 ~ari~sgTlr~g~~v~v~~p--d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~~--~ 457 (887)
T KOG0467|consen 383 FARIFSGTLRVGQVVYVLGP--DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSKV--P 457 (887)
T ss_pred eeeeccCceeeccEeeecCC--CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceecccC--C
Confidence 99999999999999999887 3333334556899999999999999999999999999999 66667888999875 3
Q ss_pred cccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChhhHHHHHHHHHhhcCCCee
Q 003305 475 AHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAE 554 (832)
Q Consensus 475 ~~~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~ 554 (832)
+.++....|..+|.++++|+|.++.++++|.++|+.|.+.||++++..+++||+++.+.||+|||.|+.+|++ |+ +++
T Consensus 458 ~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-fa-~i~ 535 (887)
T KOG0467|consen 458 CGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-FA-KIE 535 (887)
T ss_pred CcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-hh-ceE
Confidence 4454446666799999999999999999999999999999999999999999999999999999999999999 98 999
Q ss_pred EEEcCcEEeEeeeccccccce-------EeeecCCCceEEEEEEeeCchhhhhHHhcCCCC------------CCCC---
Q 003305 555 IIKSDPVVSFRETVLEKSCRT-------VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG------------PRDD--- 612 (832)
Q Consensus 555 v~~s~p~V~yrEti~~~~~~~-------~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~------------~~~~--- 612 (832)
+++++|.|+||||+.+.+... .....+.+.=++.+++.|+...+.+.+...... +.++
T Consensus 536 i~vSeP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k 615 (887)
T KOG0467|consen 536 ISVSEPLVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQK 615 (887)
T ss_pred EEecCCccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhcccccccccccccc
Confidence 999999999999996654311 001112222356677777764443322111000 0000
Q ss_pred --hhH---HHHHhhhhcC--Cc----hhccCeEEEeccCCCCCceEEecccc--------ccchHHHHHHHHHHHHHHHH
Q 003305 613 --PKA---RSKILSEEFG--WD----KDLAKKIWCFGPETTGPNMVVDMCKG--------VQYLNEIKDSVVAGFQWASK 673 (832)
Q Consensus 613 --~~~---~~~~l~~~~~--~~----~~~~~~i~~~~P~~~g~~~~~~~~~g--------~~~~~~~~~~i~~G~~~a~~ 673 (832)
+.. ....+...+. -+ ..+..++|+|||.+.|+|+|.+.... ..+...+-+++..||+.++.
T Consensus 616 ~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~ 695 (887)
T KOG0467|consen 616 GSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATS 695 (887)
T ss_pred ccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhc
Confidence 000 0001111111 00 11225678999999999999886532 22233366899999999999
Q ss_pred cCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHHHHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhcc
Q 003305 674 EGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKR 752 (832)
Q Consensus 674 ~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rr 752 (832)
.||||.||++|++|.+..+.... ++...-.||++.|++.+|++|++...|+|+.|||.|+|++..+++|+||++|++|+
T Consensus 696 sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~ 775 (887)
T KOG0467|consen 696 SGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRH 775 (887)
T ss_pred cCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhc
Confidence 99999999999999998854333 22222237999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeecCCCCCCC----------------chHH
Q 003305 753 GHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEP----------------GTQA 816 (832)
Q Consensus 753 g~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~----------------~~~a 816 (832)
|+|+++++.+||+.|.|+|.+|+.|+|||+.++|..|||.|+.++.||||+.++.||||. .|.|
T Consensus 776 gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~A 855 (887)
T KOG0467|consen 776 GKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENIA 855 (887)
T ss_pred chhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhHH
Confidence 999999999999999999999999999999999999999999999999999999999983 5899
Q ss_pred HHHHHHHHHhcCCC
Q 003305 817 AQLVADIRKRKGLK 830 (832)
Q Consensus 817 ~~~~~~~r~rkGl~ 830 (832)
+++|+.+||||||.
T Consensus 856 rkYMdaVRRRKGLf 869 (887)
T KOG0467|consen 856 RKYMDAVRRRKGLF 869 (887)
T ss_pred HHHHHHHHhhcCCc
Confidence 99999999999994
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=4.6e-114 Score=1028.51 Aligned_cols=665 Identities=28% Similarity=0.428 Sum_probs=562.9
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
.+++|||+|+||+|||||||+++|++.+|.+.+. ..+..+++|+.++|++||+|++++.+++.|.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~------------- 71 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------- 71 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC-------------
Confidence 4679999999999999999999999999877541 1122579999999999999999999999996
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHH
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (832)
+++++|||||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++...++|+|+|+||||+. +.+.++
T Consensus 72 ---~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~----~~~~~~ 144 (691)
T PRK12739 72 ---GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRI----GADFFR 144 (691)
T ss_pred ---CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 766433
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcC
Q 003305 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (832)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (832)
..+.++ ..+.. .+...++|++.. .++.- .+|...+..++|++...
T Consensus 145 ~~~~i~-------~~l~~-----------~~~~~~iPis~~-~~f~g-------------~vd~~~~~~~~~~~~~~--- 189 (691)
T PRK12739 145 SVEQIK-------DRLGA-----------NAVPIQLPIGAE-DDFKG-------------VIDLIKMKAIIWDDETL--- 189 (691)
T ss_pred HHHHHH-------HHhCC-----------CceeEEeccccc-ccceE-------------EEEcchhhhhhccCCCC---
Confidence 333332 22210 112224555432 22110 16677788899976411
Q ss_pred CCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc----
Q 003305 254 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA---- 328 (832)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 328 (832)
++++... +....+.+++++++++|++.+++.|++++++||++ .+++.+++. ..+.++++ .+|+|+
T Consensus 190 ~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~gS 259 (691)
T PRK12739 190 GAKYEEE-----DIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEG--EEITEEEIK---AAIRKATINMEFFPVLCGS 259 (691)
T ss_pred CCeeEEc-----CCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhcc--CCCCHHHHH---HHHHHHHHcCCEEEEEecc
Confidence 1223332 23445778899999999999999999999999987 568888876 45666665 589997
Q ss_pred ------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeee
Q 003305 329 ------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGK 402 (832)
Q Consensus 329 ------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~ 402 (832)
+++|||+|++++|+|.+++..+...... + ....+.|++++|++|+|||++++++.|+ ++|+|||||+
T Consensus 260 a~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~----~--~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sGt 332 (691)
T PRK12739 260 AFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDT----E--EEIERPASDDEPFAALAFKIMTDPFVGR-LTFFRVYSGV 332 (691)
T ss_pred ccCCccHHHHHHHHHHHCCChhhccccccccCCC----C--cceeeccCCCCCeEEEEEEeeeCCCCCe-EEEEEEeeeE
Confidence 7999999999999998876654432211 1 2466889999999999999999999887 9999999999
Q ss_pred eeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccccccc
Q 003305 403 VSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAM 481 (832)
Q Consensus 403 L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~ 481 (832)
|++||.|++ .+++++ ++|++||.++|++..++++++|||||+|.|++++ ++| ||++.+ .+..++++
T Consensus 333 L~~g~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~l~~~ 399 (691)
T PRK12739 333 LESGSYVLN----TTKGKK-----ERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT--TTGDTLCDEK--APIILESM 399 (691)
T ss_pred EcCCCEEEe----CCCCce-----EEecceEEEecCCcccccccCCCCEEEEeCCCcc--cCCCEEeCCC--CccccCCC
Confidence 999999984 333333 7999999999999999999999999999999986 778 998876 56677888
Q ss_pred ccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCc
Q 003305 482 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDP 560 (832)
Q Consensus 482 ~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p 560 (832)
.++ +|+++++|+|.+++|+++|.+||++|.+|||+|+|.++ +|||++|+||||||||+|++||+++| ++++++++|
T Consensus 400 ~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f--~vev~~s~p 476 (691)
T PRK12739 400 EFP-EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREF--KVEANVGAP 476 (691)
T ss_pred CCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHh--CCeeEecCC
Confidence 885 99999999999999999999999999999999999997 89999999999999999999999999 999999999
Q ss_pred EEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEE-Eecc
Q 003305 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW-CFGP 639 (832)
Q Consensus 561 ~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~-~~~P 639 (832)
+|+|||||.+.++ ..++|++ ++|+. +||+ .++ .++|
T Consensus 477 ~V~yrEti~~~~~------~~~~~~~----------------~s~g~--------------~~~~-------~v~l~~~P 513 (691)
T PRK12739 477 QVAYRETITKSVE------AEGKYKK----------------QSGGR--------------GQYG-------DVWIEFEP 513 (691)
T ss_pred EEEEeeccCCccc------ccceecc----------------ccCCC--------------Ccee-------EEEEEEEE
Confidence 9999999998763 3455544 44442 3444 244 5888
Q ss_pred CCCC-CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHHHHH
Q 003305 640 ETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYAS 717 (832)
Q Consensus 640 ~~~g-~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~a 717 (832)
...| ++.|.+++.|+.++++++++|++||+|||++|||||+||+||+|+|+|+++|. |+.+ ++|.+|+++||++|
T Consensus 514 ~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~---~~~~~a~~~a~~~a 590 (691)
T PRK12739 514 NEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSE---LAFKIAASMALKEA 590 (691)
T ss_pred CCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcH---HHHHHHHHHHHHHH
Confidence 6554 68899999999999999999999999999999999999999999999999996 5543 35678999999999
Q ss_pred HHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeee
Q 003305 718 QLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (832)
Q Consensus 718 l~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (832)
|++|+|+||||||+|||+||++++|+||++|++|||+|++++..++ .+.|+|.+|++|+|||+++||++|+|+|+|+|
T Consensus 591 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~--~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~ 668 (691)
T PRK12739 591 AKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGG--AQIVKAFVPLSEMFGYATDLRSATQGRATFSM 668 (691)
T ss_pred HHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCC--cEEEEEEeCHHHhhccHHHHHhhccCceEEEE
Confidence 9999999999999999999999999999999999999999987664 67899999999999999999999999999999
Q ss_pred EecceeecCCCCCCCchHHHHHHHH
Q 003305 798 VFDHWDMMSSDPLEPGTQAAQLVAD 822 (832)
Q Consensus 798 ~f~~y~~~~~~~~~~~~~a~~~~~~ 822 (832)
+|+||+++|++. +++++++
T Consensus 669 ~f~~y~~v~~~~------~~~ii~~ 687 (691)
T PRK12739 669 EFDHYEEVPKNI------AEEIIKK 687 (691)
T ss_pred EeccceECCHHH------HHHHHHH
Confidence 999999999774 8888765
No 11
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1e-113 Score=1024.63 Aligned_cols=665 Identities=28% Similarity=0.418 Sum_probs=556.9
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
.++||||+|+||+|+|||||+++|++.+|.+.+. ..+..+++|+.++|++||+|++++.+++.|.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~------------- 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------- 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-------------
Confidence 5789999999999999999999999999987651 1122579999999999999999999999996
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHH
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (832)
+++++|||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+. +++..+
T Consensus 74 ---~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~----~~~~~~ 146 (693)
T PRK00007 74 ---DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRT----GADFYR 146 (693)
T ss_pred ---CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCC----CCCHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 776443
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccce-eeehhhHHHHhhhccCCChHHHHHHhhcCcccCc
Q 003305 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGW-AFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (832)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~-~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~ 252 (832)
.. +++.+.++.. +....+|+++. .++ ++ +|+..+..++|++..
T Consensus 147 ~~---~~i~~~l~~~---------------~~~~~ipisa~-~~f~g~--------------~d~~~~~~~~~~~~~--- 190 (693)
T PRK00007 147 VV---EQIKDRLGAN---------------PVPIQLPIGAE-DDFKGV--------------VDLVKMKAIIWNEAD--- 190 (693)
T ss_pred HH---HHHHHHhCCC---------------eeeEEecCccC-CcceEE--------------EEcceeeeeecccCC---
Confidence 33 3333333221 11224555432 221 11 455566677886421
Q ss_pred CCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc---
Q 003305 253 ATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA--- 328 (832)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 328 (832)
.+.++... +......+++.+++++|++.+++.|++++++||++ ++++.+++. .++.++++ ++|+|+
T Consensus 191 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~l~~~~l~---~~l~~~~~~~~~~Pv~~g 260 (693)
T PRK00007 191 LGATFEYE-----EIPADLKDKAEEYREKLIEAAAEADEELMEKYLEG--EELTEEEIK---AALRKATIANEIVPVLCG 260 (693)
T ss_pred CCCcceEc-----cCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCc--CCCCHHHHH---HHHHHHHhcCcEEEEEec
Confidence 12223322 22334566788899999999999999999999985 789998886 56677766 589997
Q ss_pred -------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeee
Q 003305 329 -------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 401 (832)
Q Consensus 329 -------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG 401 (832)
+++|||+|++++|+|.+++..+.. ..+......++.||+++|++|||||+.++++.|+ ++|+|||||
T Consensus 261 Sa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-ia~~RV~sG 334 (693)
T PRK00007 261 SAFKNKGVQPLLDAVVDYLPSPLDVPAIKGI-----LPDGEEEEVERKASDDEPFSALAFKIMTDPFVGK-LTFFRVYSG 334 (693)
T ss_pred ccccCcCHHHHHHHHHHHCCChhhccccccc-----CCCccccceeecCCCCCCeEEEEEEeeecCCCCc-EEEEEEeee
Confidence 599999999999999876543210 0011123456789999999999999999999887 999999999
Q ss_pred eeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccc
Q 003305 402 KVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRA 480 (832)
Q Consensus 402 ~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~ 480 (832)
+|++||.|++ .+++++ ++|++||.++|++..+|++|.|||||++.|++++ ++| ||++.+ .+..+++
T Consensus 335 tl~~g~~v~~----~~~~~~-----eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdtL~~~~--~~~~l~~ 401 (693)
T PRK00007 335 VLESGSYVLN----STKGKK-----ERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT--TTGDTLCDEK--NPIILES 401 (693)
T ss_pred EEcCCCEEEe----CCCCce-----eEeceeEEeccCCcccccccCCCcEEEEeCCccC--CcCCEeeCCC--CccccCC
Confidence 9999999994 333333 7999999999999999999999999999999987 677 998876 5567777
Q ss_pred cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcC
Q 003305 481 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSD 559 (832)
Q Consensus 481 ~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~ 559 (832)
+.++ +|+++++|+|.++.|.+||.+||++|.+|||+|+|.++ +|||++|+||||||||+|++||+++| ++++++++
T Consensus 402 ~~~~-~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~--~vev~~s~ 478 (693)
T PRK00007 402 MEFP-EPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREF--KVEANVGK 478 (693)
T ss_pred CCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHh--CCeeEecC
Confidence 7775 99999999999999999999999999999999999997 89999999999999999999999999 99999999
Q ss_pred cEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEE-ec
Q 003305 560 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC-FG 638 (832)
Q Consensus 560 p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~ 638 (832)
|+|+|||||.+.+. ..++|++ +.|+. +||+ .+|. ++
T Consensus 479 p~V~yrETi~~~~~------~~~~~~~----------------~~gg~--------------~~~~-------~v~l~~e 515 (693)
T PRK00007 479 PQVAYRETIRKKVE------VEGKFVK----------------QSGGR--------------GQYG-------HVVIEFE 515 (693)
T ss_pred CEEEEeecccCccc------cCccccc----------------ccCCC--------------CceE-------EEEEEEE
Confidence 99999999998762 3455544 44442 3443 2553 77
Q ss_pred cCCC-CCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHHHH
Q 003305 639 PETT-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYA 716 (832)
Q Consensus 639 P~~~-g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~ 716 (832)
|... .++.|.+.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+.+|. |+.+ .++..|+++||++
T Consensus 516 P~~~~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~---~~~~~a~~~a~~~ 592 (693)
T PRK00007 516 PNEPGKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSE---MAFKIAGSMAFKE 592 (693)
T ss_pred eCCCCCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcH---HHHHHHHHHHHHH
Confidence 7544 357888889999999999999999999999999999999999999999999996 6544 3577899999999
Q ss_pred HHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeee
Q 003305 717 SQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (832)
Q Consensus 717 al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (832)
|+++|+|+||||||+|+|+||++++|+||++|++|||+|+++++.+ +++.|+|.+|++|||||+++||++|+|+|+|+
T Consensus 593 a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~ 670 (693)
T PRK00007 593 AAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRG--GAKVIRAEVPLSEMFGYATDLRSMTQGRATYS 670 (693)
T ss_pred HHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccC--CcEEEEEEcCHHHhhccHHHHHhhcCCceEEE
Confidence 9999999999999999999999999999999999999999987654 47899999999999999999999999999999
Q ss_pred eEecceeecCCCCCCCchHHHHHHHH
Q 003305 797 CVFDHWDMMSSDPLEPGTQAAQLVAD 822 (832)
Q Consensus 797 ~~f~~y~~~~~~~~~~~~~a~~~~~~ 822 (832)
|+|+||++||++. +++++.+
T Consensus 671 ~~f~~y~~v~~~~------~~~~~~~ 690 (693)
T PRK00007 671 MEFDHYEEVPKNV------AEEIIKK 690 (693)
T ss_pred EEeceeeECCHHH------HHHHHHH
Confidence 9999999999875 7777655
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=6.8e-111 Score=1002.17 Aligned_cols=662 Identities=28% Similarity=0.397 Sum_probs=551.2
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc----eEeecCcccccccCceeeeeeEEEEeeccchhhcccc
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~----~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (832)
..++||||+|+||+|||||||+++|++.+|.+.+ .|+ .+++|+.++|++||+|++++..++.|.
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~--~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~---------- 73 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHK--IGEVHDGAATMDWMEQEKERGITITSAATTVFWK---------- 73 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccc--cccccCCccccCCCHHHHhcCCCEecceEEEEEC----------
Confidence 3578999999999999999999999999998755 222 478999999999999999999999996
Q ss_pred CcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCC
Q 003305 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 170 (832)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~ 170 (832)
+++++|||||||.+|..++.++++.+|++|+|||+.+|++.+++.+|+++...++|+++|+||||+. +++
T Consensus 74 ------~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~----~~~ 143 (689)
T TIGR00484 74 ------GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKT----GAN 143 (689)
T ss_pred ------CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCC----CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 776
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCccc
Q 003305 171 GEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 250 (832)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~ 250 (832)
.++..+.+++. +.. .+....+|++.. .++.-. +|+..+..+.|
T Consensus 144 ~~~~~~~i~~~-------l~~-----------~~~~~~ipis~~-~~~~~~-------------id~~~~~~~~~----- 186 (689)
T TIGR00484 144 FLRVVNQIKQR-------LGA-----------NAVPIQLPIGAE-DNFIGV-------------IDLVEMKAYFF----- 186 (689)
T ss_pred HHHHHHHHHHH-------hCC-----------CceeEEeccccC-CCceEE-------------EECccceEEec-----
Confidence 44443333322 210 112224555432 221100 33433323333
Q ss_pred CcCC-CceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc
Q 003305 251 DPAT-KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA 328 (832)
Q Consensus 251 ~~~~-~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (832)
++.. ..+... .....+.+++.+++++|+|++++.|+++|++||++ .+++.+++. +++.++++ ++++|+
T Consensus 187 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~~~~~~l~---~~l~~~~~~~~~~PV 256 (689)
T TIGR00484 187 NGDKGTKAIEK-----EIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEG--EELTIEEIK---NAIRKGVLNCEFFPV 256 (689)
T ss_pred ccCCCceeeec-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHhcCCEEEE
Confidence 3211 112211 34556778888999999999999999999999996 688888876 56777765 678887
Q ss_pred ----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003305 329 ----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (832)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV 398 (832)
+++|||+|++++|+|.+++..+... .+......+.|++++|++|+|||+.++++.|. ++|+||
T Consensus 257 ~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~------~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-i~~~RV 329 (689)
T TIGR00484 257 LCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGID------PDTEKEIERKASDDEPFSALAFKVATDPFVGQ-LTFVRV 329 (689)
T ss_pred EeccccCCccHHHHHHHHHHHCCCchhcccccccC------CCCCceeeecCCCCCceEEEEEEeeecCCCCe-EEEEEE
Confidence 5999999999999998765432211 01112456789999999999999999999886 999999
Q ss_pred eeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccc
Q 003305 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHP 477 (832)
Q Consensus 399 ~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~ 477 (832)
|||+|++||.|++ .+.+++ +++++||.++|++..++++++|||||+|.|++++ .+| ||++.+ .+..
T Consensus 330 ~sGtL~~g~~v~~----~~~~~~-----~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~ 396 (689)
T TIGR00484 330 YSGVLKSGSYVKN----SRKNKK-----ERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT--TTGDTLCDPK--IDVI 396 (689)
T ss_pred EEeEEcCCCEEEe----CCCCce-----EEecceEEeecCCcccccccCCCCEEEEcCCCCC--CCCCEEeCCC--Cccc
Confidence 9999999999994 333333 7999999999999999999999999999999987 556 998776 5566
Q ss_pred ccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEE
Q 003305 478 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEII 556 (832)
Q Consensus 478 ~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~ 556 (832)
++++.++ +|+++++|+|.++.|.+||.+||++|.+|||+|+|.++ +|||++|+||||||||+|++||+++| +++++
T Consensus 397 ~~~~~~~-~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~--~vev~ 473 (689)
T TIGR00484 397 LERMEFP-EPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREF--KVEAN 473 (689)
T ss_pred cCCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHh--CCeeE
Confidence 7777775 99999999999999999999999999999999999998 89999999999999999999999999 99999
Q ss_pred EcCcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEE
Q 003305 557 KSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC 636 (832)
Q Consensus 557 ~s~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 636 (832)
+++|+|+|||||.+.++ ..++|++ ++|+. +||+ .++.
T Consensus 474 ~~~p~V~yrEti~~~~~------~~~~~~~----------------~~~~~--------------~~~~-------~v~l 510 (689)
T TIGR00484 474 VGAPQVAYRETIRSKVE------VEGKHAK----------------QSGGR--------------GQYG-------HVKI 510 (689)
T ss_pred ecCCEEEEeecccCccc------ccccccc----------------ccCCC--------------CceE-------EEEE
Confidence 99999999999998763 2344543 44432 3333 2553
Q ss_pred -eccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHH
Q 003305 637 -FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVI 714 (832)
Q Consensus 637 -~~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~ 714 (832)
++|...+++.|.+++.|+..+++++++|++||+||+++|||||+||+||+|+|+|+++|. |+.. .++.+|+++||
T Consensus 511 ~~eP~~~~g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~---~~~~~a~~~a~ 587 (689)
T TIGR00484 511 RFEPLEPKGYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSE---MAFKLAASLAF 587 (689)
T ss_pred EEEECCCCCcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCH---HHHHHHHHHHH
Confidence 677655667788888889999999999999999999999999999999999999999996 5543 35668999999
Q ss_pred HHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCcee
Q 003305 715 YASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAF 794 (832)
Q Consensus 715 ~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~ 794 (832)
++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+ +.+.|+|++|++|||||+++||++|+|+|+
T Consensus 588 ~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~ 665 (689)
T TIGR00484 588 KEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARG--NVQKIKAEVPLSEMFGYATDLRSFTQGRGT 665 (689)
T ss_pred HHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccC--CcEEEEEEeCHHHHhChHHHHHHhcCCceE
Confidence 999999999999999999999999999999999999999999887654 479999999999999999999999999999
Q ss_pred eeeEecceeecCCCCCCCchHHHHHHHH
Q 003305 795 PQCVFDHWDMMSSDPLEPGTQAAQLVAD 822 (832)
Q Consensus 795 ~~~~f~~y~~~~~~~~~~~~~a~~~~~~ 822 (832)
|+|+|+||++||+++ +++++++
T Consensus 666 ~~~~f~~y~~v~~~~------~~~ii~~ 687 (689)
T TIGR00484 666 YSMEFLHYGEVPSSV------ANEIIEK 687 (689)
T ss_pred EEEEeccceeCCHHH------HHHHHHh
Confidence 999999999999886 8887754
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=5.3e-108 Score=980.25 Aligned_cols=662 Identities=29% Similarity=0.410 Sum_probs=547.9
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc--CCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
.+++|||+|+||.|||||||+++|++.+|.+.+.. .+..+++|+.+.|++||+|+..+..++.|.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~------------- 71 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD------------- 71 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC-------------
Confidence 45789999999999999999999999998776521 112468999999999999999999999996
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHH
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (832)
++.++|||||||.||..++..+++.+|++++|+|+++|++.++..+|+++...++|+++|+||+|+. +++..+
T Consensus 72 ---~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~----~~~~~~ 144 (687)
T PRK13351 72 ---NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV----GADLFK 144 (687)
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC----CCCHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 777443
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceec--ccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccC
Q 003305 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAF--SAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (832)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~--~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (832)
.+++++..+.. .+...++|+ ++.+.||. |+..+..+.|+..
T Consensus 145 -------~~~~i~~~l~~-----------~~~~~~~P~~~~~~~~g~i----------------d~~~~~~~~~~~~--- 187 (687)
T PRK13351 145 -------VLEDIEERFGK-----------RPLPLQLPIGSEDGFEGVV----------------DLITEPELHFSEG--- 187 (687)
T ss_pred -------HHHHHHHHHCC-----------CeEEEEeccccCCceEEEE----------------ECccceEEecccC---
Confidence 44444443321 111123333 23355553 3333444566432
Q ss_pred cCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc--
Q 003305 252 PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA-- 328 (832)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-- 328 (832)
..++.+... +....+.+++++++++|++.+++.|++++++||++ .+++.+++. ..++++++ ++|+|+
T Consensus 188 ~~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~--~~l~~~~l~---~~~~~~~~~~~~~PV~~ 257 (687)
T PRK13351 188 DGGSTVEEG-----PIPEELLEEVEEAREKLIEALAEFDDELLELYLEG--EELSAEQLR---APLREGTRSGHLVPVLF 257 (687)
T ss_pred CCCCceEEc-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEe
Confidence 112223322 33557888899999999999999999999999985 789998886 45555554 689997
Q ss_pred --------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeee
Q 003305 329 --------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (832)
Q Consensus 329 --------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~s 400 (832)
+++|||+|++++|+|.+++..+... . +. ....+.|++++|++|+|||++++++.|. ++|+||||
T Consensus 258 gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~----~~-~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~s 329 (687)
T PRK13351 258 GSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--D----NG-KPVKVDPDPEKPLLALVFKVQYDPYAGK-LTYLRVYS 329 (687)
T ss_pred cccCcCccHHHHHHHHHHHCCChhhcccccccC--C----CC-CceeecCCCCCCeEEEEEEeeecCCCce-EEEEEEeE
Confidence 5899999999999998765543321 0 00 1234678999999999999999999887 99999999
Q ss_pred eeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccccc
Q 003305 401 GKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIR 479 (832)
Q Consensus 401 G~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~ 479 (832)
|+|++||.|++.+. ++. +++++||.++|.+..++++|.|||||++.|++++ .+| ||++.. ....++
T Consensus 330 Gtl~~g~~v~~~~~----~~~-----~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~~~ 396 (687)
T PRK13351 330 GTLRAGSQLYNGTG----GKR-----EKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL--ETGDTLHDSA--DPVLLE 396 (687)
T ss_pred EEEcCCCEEEeCCC----CCc-----eEeeeEEEEccCCeeECCccCCCCEEEEECcccC--ccCCEEeCCC--CccccC
Confidence 99999999997542 222 7999999999999999999999999999999987 456 998776 455666
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEc
Q 003305 480 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (832)
Q Consensus 480 ~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s 558 (832)
++.++ +|+++++|+|.+++|.++|.+||++|.+|||+|+|+++ +|||++|+||||||||++++||+++| +++++++
T Consensus 397 ~~~~~-~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~--~vev~~~ 473 (687)
T PRK13351 397 LLTFP-EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREF--KLEVNTG 473 (687)
T ss_pred CCCCC-CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CCceEec
Confidence 76664 99999999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred CcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEE-e
Q 003305 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC-F 637 (832)
Q Consensus 559 ~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~ 637 (832)
+|+|+|||||.+.++. .++|++ +.|+. +||+ .++. +
T Consensus 474 ~p~V~y~Eti~~~~~~------~~~~~~----------------~~~~~--------------~~~~-------~v~~~~ 510 (687)
T PRK13351 474 KPQVAYRETIRKMAEG------VYRHKK----------------QFGGK--------------GQFG-------EVHLRV 510 (687)
T ss_pred CCeEEEEeeccccccc------cceeee----------------ccCCC--------------ceEE-------EEEEEE
Confidence 9999999999987632 333433 33221 2222 2343 5
Q ss_pred ccCCC-CCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHH
Q 003305 638 GPETT-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYA 716 (832)
Q Consensus 638 ~P~~~-g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~ 716 (832)
+|... .++.|.+.+.|+.++++++++|++||++||++|||||+||+||+|+|+|+++|.+.+ ..++|++|+++||++
T Consensus 511 ep~~~~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s--~~~~~~~a~~~a~~~ 588 (687)
T PRK13351 511 EPLERGAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDS--SESAFKAAARKAFLE 588 (687)
T ss_pred EECCCCCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCC--CHHHHHHHHHHHHHH
Confidence 55432 247888888899999999999999999999999999999999999999999996322 357899999999999
Q ss_pred HHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeee
Q 003305 717 SQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (832)
Q Consensus 717 al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (832)
|+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..+++ .+.|+|.+|++|||||+++||++|+|+|+|+
T Consensus 589 a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~-~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~ 667 (687)
T PRK13351 589 AFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDG-EVLVKAEAPLAELFGYATRLRSMTKGRGSFT 667 (687)
T ss_pred HHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCc-EEEEEEEECHHHhhChHHHHHhhcCCceEEE
Confidence 999999999999999999999999999999999999999999876653 3349999999999999999999999999999
Q ss_pred eEecceeecCCCCCCCchHHHHHH
Q 003305 797 CVFDHWDMMSSDPLEPGTQAAQLV 820 (832)
Q Consensus 797 ~~f~~y~~~~~~~~~~~~~a~~~~ 820 (832)
|+|+||++||+++ +++++
T Consensus 668 ~~f~~y~~v~~~~------~~~~~ 685 (687)
T PRK13351 668 MEFSHFDPVPPAV------QKKVG 685 (687)
T ss_pred EEeccceeCCHHH------HHHHh
Confidence 9999999999886 66664
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.3e-101 Score=924.14 Aligned_cols=642 Identities=29% Similarity=0.419 Sum_probs=529.1
Q ss_pred EeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEEE
Q 003305 25 IAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINL 102 (832)
Q Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 102 (832)
+||+|||||||+++|++.+|.+.+. ..+..+++|+.+.|++||+|+..+..++.|. ++.++|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----------------~~~i~l 64 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK----------------GHKINL 64 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC----------------CEEEEE
Confidence 6999999999999999999988762 0112478999999999999999999999996 899999
Q ss_pred EeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHHHHHHH
Q 003305 103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVV 182 (832)
Q Consensus 103 iDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~ 182 (832)
||||||.+|..++.++++.+|++++|+|++++...++..+|+++...++|+++|+||+|+. ..+..+..+.+++
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~----~~~~~~~~~~l~~-- 138 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRA----GADFFRVLAQLQE-- 138 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999999999999998 6664443333333
Q ss_pred HHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCceEecCC
Q 003305 183 ENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNT 262 (832)
Q Consensus 183 ~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~ 262 (832)
.+.. .. .....|... ++++.||.. ......+ +|+ .++.+...
T Consensus 139 -----~l~~---~~--~~~~~p~~~----~~~~~~~id----------------~~~~~~~-----~~~-~~~~~~~~-- 180 (668)
T PRK12740 139 -----KLGA---PV--VPLQLPIGE----GDDFTGVVD----------------LLSMKAY-----RYD-EGGPSEEI-- 180 (668)
T ss_pred -----HHCC---Cc--eeEEecccC----CCCceEEEE----------------CccceEE-----Eec-CCCeeEEe--
Confidence 2210 00 011123222 344556533 2221122 233 23333332
Q ss_pred CcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc----------hHH
Q 003305 263 GSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSA 331 (832)
Q Consensus 263 ~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~----------~~~ 331 (832)
.....+.+++.+++++|++.+++.|++++++||++ ++++.+++. ..+++++. ++|+|+ ++.
T Consensus 181 ---~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~--~~l~~~~~~---~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~ 252 (668)
T PRK12740 181 ---EIPAELLDRAEEAREELLEALAEFDDELMEKYLEG--EELSEEEIK---AGLRKATLAGEIVPVFCGSALKNKGVQR 252 (668)
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHcCCEEEEEeccccCCccHHH
Confidence 23445677888999999999999999999999987 688888876 44555544 789998 899
Q ss_pred HHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEE
Q 003305 332 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI 411 (832)
Q Consensus 332 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v 411 (832)
|||+|++++|+|.+++.+. +. ......+..|++++|++|+|||++++++.|. ++|+|||||+|++||.|++
T Consensus 253 LLd~i~~~lPsp~~~~~~~------~~--~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~-i~~~RV~sG~L~~g~~v~~ 323 (668)
T PRK12740 253 LLDAVVDYLPSPLEVPPVD------GE--DGEEGAELAPDPDGPLVALVFKTMDDPFVGK-LSLVRVYSGTLKKGDTLYN 323 (668)
T ss_pred HHHHHHHHCCChhhccccc------CC--CCccccccccCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEEe
Confidence 9999999999998755421 10 0112345678999999999999999999886 9999999999999999997
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEE
Q 003305 412 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 490 (832)
Q Consensus 412 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~ 490 (832)
.+ ++++ +++++|+.++|++.+++++|+|||||++.|++.+ .+| ||++.. .+.+++++.++ +|+++
T Consensus 324 ~~----~~~~-----~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~--~~~~~~~~~~~-~P~~~ 389 (668)
T PRK12740 324 SG----TGKK-----ERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA--ATGDTLCDKG--DPILLEPMEFP-EPVIS 389 (668)
T ss_pred CC----CCCc-----EEecceeeecCCCccccCccCCCCEEEEeccCcc--CCCCEEeCCC--CccccCCCCCC-CcceE
Confidence 54 2222 7999999999999999999999999999999875 566 998766 45677788876 99999
Q ss_pred EEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEeeecc
Q 003305 491 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 569 (832)
Q Consensus 491 ~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p~V~yrEti~ 569 (832)
++|+|.+++|.++|.++|++|+++||+|+|..+ ++||++|+|+||||||+|++||+++| ++++.+++|+|+|||||.
T Consensus 390 ~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~--~~~v~~~~p~V~yrEti~ 467 (668)
T PRK12740 390 LAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREY--GVEVETGPPQVPYRETIR 467 (668)
T ss_pred EEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CceeEecCCeeEEeeccC
Confidence 999999999999999999999999999999998 89999999999999999999999999 999999999999999999
Q ss_pred ccccceEeee----cCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCc
Q 003305 570 EKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 645 (832)
Q Consensus 570 ~~~~~~~~~~----~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~ 645 (832)
++++.....+ ..+.+..++++++|++.+ .++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~---------------------------------------------~~~ 502 (668)
T PRK12740 468 KKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRG---------------------------------------------EGF 502 (668)
T ss_pred CCccccceeccccCCCCceEEEEEEEEECCCC---------------------------------------------Cce
Confidence 8764321111 111223455555555421 135
Q ss_pred eEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHHHHHHHhcCCe
Q 003305 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPR 724 (832)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~ 724 (832)
.|.+++.|+.++++++++|++||++|+++|||||+|++||+|+|+|+.+|. |+ ...+|+.|+++||++|+++|+|+
T Consensus 503 ~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~~s---~~~~~~~a~~~a~~~a~~~a~~~ 579 (668)
T PRK12740 503 EFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSVDS---SEMAFKIAARLAFREALPKAKPV 579 (668)
T ss_pred EEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccCCC---CHHHHHHHHHHHHHHHHHhcCCe
Confidence 666677788899999999999999999999999999999999999999996 43 34568899999999999999999
Q ss_pred eeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceee
Q 003305 725 LLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDM 804 (832)
Q Consensus 725 LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (832)
||||||+|||+||++++|+|+++|++|||+|++++..++ .+.|+|++|++|||||+++||++|+|+|+|+++|+||++
T Consensus 580 LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~ 657 (668)
T PRK12740 580 LLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGG--GDVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEE 657 (668)
T ss_pred eecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCC--CEEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEeccccc
Confidence 999999999999999999999999999999999987664 389999999999999999999999999999999999999
Q ss_pred cCCCC
Q 003305 805 MSSDP 809 (832)
Q Consensus 805 ~~~~~ 809 (832)
+|+++
T Consensus 658 ~~~~~ 662 (668)
T PRK12740 658 VPGNV 662 (668)
T ss_pred CCHHH
Confidence 99875
No 15
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-98 Score=771.44 Aligned_cols=657 Identities=27% Similarity=0.362 Sum_probs=523.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc----eEeecCcccccccCceeeeeeEEEEeeccchhhccccCc
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~----~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (832)
.++|||+|++|+|+||||.+++++|.+|.+.. +|. .+++|+...|++||||+++..+.+.|.
T Consensus 35 akirnigiiahidagktttterily~ag~~~s--~g~vddgdtvtdfla~erergitiqsaav~fdwk------------ 100 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHS--AGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------------ 100 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhc--ccccCCCchHHHHHHHHHhcCceeeeeeeecccc------------
Confidence 67999999999999999999999999999876 453 368999999999999999999999996
Q ss_pred CCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHH
Q 003305 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (832)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 172 (832)
+|+||+||||||+||.-|+++++|+.||+|.|+|++.|+++||..+|+++.+.++|.+.|+||||+. .++++
T Consensus 101 ----g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~----~anfe 172 (753)
T KOG0464|consen 101 ----GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL----AANFE 172 (753)
T ss_pred ----cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh----hhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 88766
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccc-eeeehhhHHHHhhhccCCChHHHHHHhhcCcccC
Q 003305 173 EAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHG-WAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (832)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g-~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (832)
.+.+.+++.+. ..|.+.++|++.+... -+| +|...-.+.+|+-+.-|
T Consensus 173 ~avdsi~ekl~------------------ak~l~l~lpi~eak~fnkg~--------------ldil~ke~l~~ncnsnd 220 (753)
T KOG0464|consen 173 NAVDSIEEKLG------------------AKALKLQLPIGEAKGFNKGF--------------LDILHKEKLLGNCNSND 220 (753)
T ss_pred hHHHHHHHHhC------------------CceEEEEecccccccccchH--------------HHHHHHhhccCCCCCCc
Confidence 55555544332 1344557788776210 011 45544445677433222
Q ss_pred cCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCc---CChHHHhhhhHHHHHH-HHhcccc
Q 003305 252 PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVT---MKSEEKDLMGKALMKR-VMQTWLP 327 (832)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~---l~~~el~~~~~~l~~~-i~~~~~P 327 (832)
+ +.|...|--. .-.+.+.+...+...+|++.+++.|++...++|+++... ++.++++ .++.+- ++++..|
T Consensus 221 g--kd~e~~plle-~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elk---sai~~lt~aq~a~~ 294 (753)
T KOG0464|consen 221 G--KDFENKPLLE-KNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELK---SAIHELTCAQKAAP 294 (753)
T ss_pred c--ccccCCcccc-cCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHH---HHHHHHhhhhhhcc
Confidence 2 3365544000 112334444556678999999999999999999997543 5666665 445543 3477777
Q ss_pred c----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeee
Q 003305 328 A----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGR 397 (832)
Q Consensus 328 ~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~R 397 (832)
+ +++|||++.-|+|||.+++ |.+-..|+ ..++|+.||+.+|+.+|+ ++|.|
T Consensus 295 i~cgsaiknkgiqplldavtmylpspeern-yeflqwyk-----------------ddlcalafkvlhdkqrg~-l~fmr 355 (753)
T KOG0464|consen 295 ILCGSAIKNKGIQPLLDAVTMYLPSPEERN-YEFLQWYK-----------------DDLCALAFKVLHDKQRGP-LSFMR 355 (753)
T ss_pred eehhhhhcccCccchhhhhhhccCChhhcc-hHHHhhhh-----------------hhHHHHhhhhhcccccCc-eeEEE
Confidence 5 7999999999999997764 66666665 237899999999999999 99999
Q ss_pred eeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCC---
Q 003305 398 VFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEV--- 473 (832)
Q Consensus 398 V~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~--- 473 (832)
||||+++++..+++.+.+. +|++.++|++++++..+|+++.||||..++||+++ .|| |+..++.+
T Consensus 356 iysgsi~~~~ai~nin~~~---------se~~~kl~~pfade~~~i~qlsagnialt~glk~t--atgdtivaskasa~a 424 (753)
T KOG0464|consen 356 IYSGSIHNNLAIFNINGMC---------SEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT--ATGDTIVASKASAEA 424 (753)
T ss_pred EecccccCceeeeeccccc---------ccchHhhhccchhhhhhhhhcccccEEEEecceee--ccCCeEEecchhHHH
Confidence 9999999999999764332 37999999999999999999999999999999998 566 77655320
Q ss_pred -------------------CcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEec
Q 003305 474 -------------------DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGA 533 (832)
Q Consensus 474 -------------------~~~~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~ 533 (832)
....|.++..| .|||+|.|||.+.+.++.+..||+.|.+||||++++.+ ++||+++.||
T Consensus 425 a~qk~~~egekk~~q~~daerll~agie~p-d~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~ 503 (753)
T KOG0464|consen 425 AAQKAAGEGEKKHLQNKDAERLLFAGIEIP-DAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGM 503 (753)
T ss_pred HHHHhhccchhhccCCccccceeeecccCC-CceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEecc
Confidence 12235667765 99999999999999999999999999999999999999 9999999999
Q ss_pred ChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEeeeccccccceEeee---cCCCceE-EEEEEeeCchhhhhHHhcCCCCC
Q 003305 534 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSK---SPNKHNR-LYMEARPLEEGLAEAIDDGRIGP 609 (832)
Q Consensus 534 GelHLei~~~~L~~~f~~~v~v~~s~p~V~yrEti~~~~~~~~~~~---~~~~~~~-i~~~~~Pl~~~~~~~i~~g~~~~ 609 (832)
||||+|++.+|++++| |+++-+|+.+|+|||+|.+....+.... +..+|-. +.+++.|.+. +..+|.
T Consensus 504 gelhie~ihdrikrey--~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~t-------qa~ip~ 574 (753)
T KOG0464|consen 504 GELHIEAIHDRIKREY--GLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEET-------QAHIPF 574 (753)
T ss_pred chhhHHHHHHHHHhhc--CchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccc-------cccccc
Confidence 9999999999999999 9999999999999999988653221111 2223311 1222222221 001110
Q ss_pred CCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCceEEeccccccchHHH-HHHHHHHHHHHHHcCCccCCCceeeEEE
Q 003305 610 RDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEI-KDSVVAGFQWASKEGALAEENMRGICFE 688 (832)
Q Consensus 610 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~~~~~~~~g~~~~~~~-~~~i~~G~~~a~~~Gpl~~~pv~~v~v~ 688 (832)
++|..--|.. -....-.+ +.+|++|+++||..|||+|+|+++|+++
T Consensus 575 ----------------------kkiefe~~es-----------~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~it 621 (753)
T KOG0464|consen 575 ----------------------KKIEFELAES-----------ANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAIT 621 (753)
T ss_pred ----------------------eeEEeecccc-----------ccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEe
Confidence 0011100110 00112223 6899999999999999999999999999
Q ss_pred EeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeeeeeeEEEEEEec-CcccccHHHHHhhccceeeeecccCCCCcE
Q 003305 689 VCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAP-EQALGGIYSVLNQKRGHVFEEMQRPGTPLY 767 (832)
Q Consensus 689 l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p-~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~ 767 (832)
|+.+.+|.... .+..+.+++.+|+++|+++|..+|+||+|+++|.+. ++++..|+++|.+|||++...+..+.+...
T Consensus 622 l~~~~i~~gk~--n~alisac~qkcvqealkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneir 699 (753)
T KOG0464|consen 622 LHECIIHGGKI--NPALISACAQKCVQEALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIR 699 (753)
T ss_pred eEEEEecCCcC--CHHHHHHHHHHHHHHHHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchh
Confidence 99999996432 234567899999999999999999999999999985 499999999999999999999887776677
Q ss_pred EEEEEeechhhcCccHHhhhhCCCceeeeeEecceeecCCC
Q 003305 768 NIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD 808 (832)
Q Consensus 768 ~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~ 808 (832)
.|.|.+|++|..||++.||.+|+|.|.|.++|++|+.|.++
T Consensus 700 ri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn~~ 740 (753)
T KOG0464|consen 700 RICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMNEH 740 (753)
T ss_pred eeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcChH
Confidence 89999999999999999999999999999999999999776
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=4.3e-77 Score=691.12 Aligned_cols=464 Identities=27% Similarity=0.473 Sum_probs=396.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
||||+|+||+|||||||+++|++.+|.+.+...-..+++|+.++|++||+|+.++..++.|. ++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~----------------~~ 64 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN----------------GT 64 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----------------CE
Confidence 69999999999999999999999999887632223468999999999999999999999996 89
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHHH
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 178 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~ 178 (832)
++||||||||.||..++.++++.+|+|+||||+.+|+.+||+.+|+.+...++|+|+|+||||+. +++++++.+.+
T Consensus 65 kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~----~a~~~~v~~ei 140 (594)
T TIGR01394 65 KINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----SARPDEVVDEV 140 (594)
T ss_pred EEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCC----CcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 77766666555
Q ss_pred HHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCceE
Q 003305 179 SRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWT 258 (832)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~~ 258 (832)
.+.+..+... ++. ...++.++|+..||+..- . +..
T Consensus 141 ~~l~~~~g~~-----~e~--------l~~pvl~~SA~~g~~~~~--------------~-------------~~~----- 175 (594)
T TIGR01394 141 FDLFAELGAD-----DEQ--------LDFPIVYASGRAGWASLD--------------L-------------DDP----- 175 (594)
T ss_pred HHHHHhhccc-----ccc--------ccCcEEechhhcCccccc--------------C-------------ccc-----
Confidence 5555432210 000 011456677777774310 0 000
Q ss_pred ecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHHHHHh
Q 003305 259 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIF 338 (832)
Q Consensus 259 ~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~~ 338 (832)
. + .+.+||+++++
T Consensus 176 ------------------------------~--~-----------------------------------gi~~Lld~Iv~ 188 (594)
T TIGR01394 176 ------------------------------S--D-----------------------------------NMAPLFDAIVR 188 (594)
T ss_pred ------------------------------c--c-----------------------------------CHHHHHHHHHH
Confidence 0 0 02568899999
Q ss_pred cCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCC
Q 003305 339 HLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVP 418 (832)
Q Consensus 339 ~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~ 418 (832)
++|+|. .++++||+++|||++.+++.|+ ++++||+||+|++||.|++...+
T Consensus 189 ~lP~P~-------------------------~~~~~pl~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~~~~--- 239 (594)
T TIGR01394 189 HVPAPK-------------------------GDLDEPLQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALMKRD--- 239 (594)
T ss_pred hCCCCC-------------------------CCCCCCEEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEecCC---
Confidence 999993 1356899999999999999998 99999999999999999976421
Q ss_pred CCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEeCC
Q 003305 419 GEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKV 497 (832)
Q Consensus 419 ~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~~Iep~~ 497 (832)
+. ...++|++|+.+.|.+..++++|.|||||++.|++++ .+| |||+.. .+.+++++.++ +|+++++++|.+
T Consensus 240 ~~---~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i--~~Gdtl~~~~--~~~~l~~~~~~-~P~~~~~~~~~~ 311 (594)
T TIGR01394 240 GT---IENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI--NIGETIADPE--VPEALPTITVD-EPTLSMTFSVND 311 (594)
T ss_pred Cc---eeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc--CCCCEEeCCC--ccccCCCCCCC-CCeEEEEEEecC
Confidence 11 1237999999999999999999999999999999987 677 999887 66778888876 999999999975
Q ss_pred C---CChhH------HHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEeee
Q 003305 498 A---SDLPK------LVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567 (832)
Q Consensus 498 ~---~d~~k------l~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p~V~yrEt 567 (832)
. .+..| |.++|.++.++||+|+|+.+ +++|++|+|+|||||+|++++|+++ |+++.+++|+|+|||
T Consensus 312 ~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yre- 387 (594)
T TIGR01394 312 SPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE---GFELQVGRPQVIYKE- 387 (594)
T ss_pred CCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc---CceEEEeCCEEEEEe-
Confidence 4 33333 99999999999999999998 8999999999999999999999998 899999999999998
Q ss_pred ccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCceE
Q 003305 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMV 647 (832)
Q Consensus 568 i~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~~~ 647 (832)
|.
T Consensus 388 i~------------------------------------------------------------------------------ 389 (594)
T TIGR01394 388 ID------------------------------------------------------------------------------ 389 (594)
T ss_pred CC------------------------------------------------------------------------------
Confidence 30
Q ss_pred EeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeeee
Q 003305 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 727 (832)
Q Consensus 648 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlE 727 (832)
| +|||
T Consensus 390 -----g----------------------------------------------------------------------~llE 394 (594)
T TIGR01394 390 -----G----------------------------------------------------------------------KKLE 394 (594)
T ss_pred -----C----------------------------------------------------------------------eEEC
Confidence 0 5799
Q ss_pred eeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeecCC
Q 003305 728 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSS 807 (832)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~ 807 (832)
||++++|.||++++|+||++|++|||+|++++..++ ++..|+|.+|+++++||.++|||+|+|+|+|+++|+||+++|+
T Consensus 395 Pi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~-~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~ 473 (594)
T TIGR01394 395 PIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGN-GRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKG 473 (594)
T ss_pred CEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCC-CEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCC
Confidence 999999999999999999999999999999997543 5889999999999999999999999999999999999999998
Q ss_pred CC
Q 003305 808 DP 809 (832)
Q Consensus 808 ~~ 809 (832)
+.
T Consensus 474 ~i 475 (594)
T TIGR01394 474 EI 475 (594)
T ss_pred cC
Confidence 74
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.6e-75 Score=676.32 Aligned_cols=465 Identities=27% Similarity=0.455 Sum_probs=395.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+++|||+|+||+|||||||+++|++.+|.+.+......+++|+.++|++||+|+.++.+.+.|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~---------------- 66 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN---------------- 66 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC----------------
Confidence 4799999999999999999999999988876632223479999999999999999999999886
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHH
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (832)
+++++|||||||.+|..++.++++.+|++|+|||+.+|+..||+.+|+.+...++|+++|+||||+. +++++++.+
T Consensus 67 ~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~----~a~~~~vl~ 142 (607)
T PRK10218 67 DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP----GARPDWVVD 142 (607)
T ss_pred CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC----CCchhHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 888777666
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003305 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (832)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (832)
.+.+.+..+... +. ....+|.++|+.+||+-. +...
T Consensus 143 ei~~l~~~l~~~-----~~--------~~~~PVi~~SA~~G~~~~--------------~~~~----------------- 178 (607)
T PRK10218 143 QVFDLFVNLDAT-----DE--------QLDFPIVYASALNGIAGL--------------DHED----------------- 178 (607)
T ss_pred HHHHHHhccCcc-----cc--------ccCCCEEEeEhhcCcccC--------------Cccc-----------------
Confidence 666655432211 00 011256677887776320 0000
Q ss_pred eEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHHHH
Q 003305 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (832)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (832)
. .+ .+.+|||+|
T Consensus 179 --------------------------------~--------~~----------------------------~i~~Lld~I 190 (607)
T PRK10218 179 --------------------------------M--------AE----------------------------DMTPLYQAI 190 (607)
T ss_pred --------------------------------c--------cc----------------------------chHHHHHHH
Confidence 0 00 025789999
Q ss_pred HhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCC
Q 003305 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (832)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~ 416 (832)
++++|+|. +++++||.++|||++.+++.|+ ++++||+||+|+.||.|++....
T Consensus 191 i~~iP~P~-------------------------~~~~~Pl~~~V~k~~~d~~~G~-i~~gRV~sG~lk~Gd~v~~~~~~- 243 (607)
T PRK10218 191 VDHVPAPD-------------------------VDLDGPFQMQISQLDYNSYVGV-IGIGRIKRGKVKPNQQVTIIDSE- 243 (607)
T ss_pred HHhCCCCC-------------------------CCCCCCeEEEEEeeEecCCCcE-EEEEEEEeCcCcCCCEEEEecCC-
Confidence 99999993 2457899999999999999998 99999999999999999975321
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEe
Q 003305 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 495 (832)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~~Iep 495 (832)
+. ...++|++||.+.|.++.++++|.|||||+++|++++ .+| |||+.. .+.+++++.++ +|++++++.|
T Consensus 244 --~~---~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GdTl~~~~--~~~~l~~~~~~-~P~~~~~~~~ 313 (607)
T PRK10218 244 --GK---TRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL--NISDTVCDTQ--NVEALPALSVD-EPTVSMFFCV 313 (607)
T ss_pred --Cc---EeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc--ccCcEEecCC--CcccCCCCCCC-CCeEEEEEEe
Confidence 11 1237999999999999999999999999999999997 677 999877 56677888876 9999999999
Q ss_pred CC---CCChhHHHH---HHHHHHh---hCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEe
Q 003305 496 KV---ASDLPKLVE---GLKRLAK---SDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 565 (832)
Q Consensus 496 ~~---~~d~~kl~~---~L~~L~~---eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p~V~yr 565 (832)
.+ ..|+.|+.. +|++|.+ +||+|+|+.+ +++|++|+|+|||||+|++++|+++ |+++.+++|+|+||
T Consensus 314 ~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yr 390 (607)
T PRK10218 314 NTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE---GFELAVSRPKVIFR 390 (607)
T ss_pred CCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC---CceEEEeCCEEEEE
Confidence 99 789999855 5555555 9999999988 8999999999999999999999999 89999999999999
Q ss_pred eeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCc
Q 003305 566 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 645 (832)
Q Consensus 566 Eti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~ 645 (832)
|| + |
T Consensus 391 et--~------------------------------------------------------------------------g-- 394 (607)
T PRK10218 391 EI--D------------------------------------------------------------------------G-- 394 (607)
T ss_pred EE--C------------------------------------------------------------------------C--
Confidence 97 0 0
Q ss_pred eEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCee
Q 003305 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725 (832)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~L 725 (832)
..
T Consensus 395 --------~k---------------------------------------------------------------------- 396 (607)
T PRK10218 395 --------RK---------------------------------------------------------------------- 396 (607)
T ss_pred --------EE----------------------------------------------------------------------
Confidence 00
Q ss_pred eeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeec
Q 003305 726 LEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM 805 (832)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~ 805 (832)
||||++++|.||++++|+||++|++|||++++++..++ ++..|+|.+|+++++||.++|||+|+|+|+|++.|+||+++
T Consensus 397 lEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~-~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~ 475 (607)
T PRK10218 397 QEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGK-GRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDV 475 (607)
T ss_pred eCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECCC-CEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCC
Confidence 69999999999999999999999999999999997543 58999999999999999999999999999999999999999
Q ss_pred C-CC
Q 003305 806 S-SD 808 (832)
Q Consensus 806 ~-~~ 808 (832)
| ++
T Consensus 476 ~~g~ 479 (607)
T PRK10218 476 RPGE 479 (607)
T ss_pred CCCC
Confidence 9 54
No 18
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=9.3e-74 Score=665.98 Aligned_cols=488 Identities=27% Similarity=0.442 Sum_probs=393.2
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
..+++|||+|+||+|||||||+++|++.+|.+.+...+ .+++|+.++|++||+|+.++.+.+.|.. .+
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~-~~~lD~~~~ErerGiTi~~~~v~~~~~~-----------~d 70 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMK-AQVLDSMDLERERGITIKAQAVRLNYKA-----------KD 70 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccc-cccccCchHHhhcCCcccccEEEEEEEc-----------cC
Confidence 45679999999999999999999999999988764333 5789999999999999999999988851 13
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHH
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~ 174 (832)
++++.++|||||||.||..++.++++.+|++|+|||+++|++.||...|..+...++|+++|+||+|+. +++.++.
T Consensus 71 g~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~----~a~~~~v 146 (600)
T PRK05433 71 GETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLP----AADPERV 146 (600)
T ss_pred CCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC----cccHHHH
Confidence 457899999999999999999999999999999999999999999999988888899999999999987 6553332
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCC
Q 003305 175 YQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (832)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~ 254 (832)
.+.+++ .+.. .+ ..+...|+..|+
T Consensus 147 ~~ei~~-------~lg~-----------~~--~~vi~iSAktG~------------------------------------ 170 (600)
T PRK05433 147 KQEIED-------VIGI-----------DA--SDAVLVSAKTGI------------------------------------ 170 (600)
T ss_pred HHHHHH-------HhCC-----------Cc--ceEEEEecCCCC------------------------------------
Confidence 222211 1110 00 012222221111
Q ss_pred CceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHH
Q 003305 255 KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLE 334 (832)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 334 (832)
| +..||+
T Consensus 171 -----------------------------------------------G--------------------------I~~Ll~ 177 (600)
T PRK05433 171 -----------------------------------------------G--------------------------IEEVLE 177 (600)
T ss_pred -----------------------------------------------C--------------------------HHHHHH
Confidence 0 145788
Q ss_pred HHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCC
Q 003305 335 MMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGP 414 (832)
Q Consensus 335 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~ 414 (832)
++++++|+|. .++++|+.++|||++.+++.|. ++++||++|+|+.||.|+++.
T Consensus 178 ~I~~~lp~P~-------------------------~~~~~pl~~~Vfd~~~d~~~G~-v~~~rV~sG~Lk~Gd~i~~~~- 230 (600)
T PRK05433 178 AIVERIPPPK-------------------------GDPDAPLKALIFDSWYDNYRGV-VVLVRVVDGTLKKGDKIKMMS- 230 (600)
T ss_pred HHHHhCcccc-------------------------CCCCCCceEEEEEEEecCCCce-EEEEEEEcCEEecCCEEEEec-
Confidence 8888899983 1356899999999999999998 999999999999999999753
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe-cc---ccccccce-eeecCCCCCcccccccccCCCceE
Q 003305 415 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVV 489 (832)
Q Consensus 415 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~ 489 (832)
.+.. ++|.+|+.+.+ +..+++++.||||+++. |+ +++ ++| ||++...+...++++++++ +|++
T Consensus 231 ---~~~~-----~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~v 298 (600)
T PRK05433 231 ---TGKE-----YEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDA--RVGDTITLAKNPAEEPLPGFKEV-KPMV 298 (600)
T ss_pred ---CCce-----EEEEEeeccCC-CceECcEEcCCCEEEEeccccccccc--CCCCEEECCCCccccCCCCCCCC-CcEE
Confidence 2222 79999996655 88999999999998885 44 444 677 9987762112467788775 9999
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEe-----cChhhHHHHHHHHHhhcCCCeeEEEcCcEEeE
Q 003305 490 RVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSF 564 (832)
Q Consensus 490 ~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g-----~GelHLei~~~~L~~~f~~~v~v~~s~p~V~y 564 (832)
+++|+|.+.+|.++|.+||++|++|||||.++ .+|+|.++.| ||+||||++++||+++| |+++.+++|.|+|
T Consensus 299 ~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~--~~~v~~~~P~V~Y 375 (600)
T PRK05433 299 FAGLYPVDSDDYEDLRDALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVY 375 (600)
T ss_pred EEEEEECCccCHHHHHHHHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhh--CceEEEecCEEEE
Confidence 99999999999999999999999999999997 6899999999 99999999999999999 9999999999999
Q ss_pred eeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCC
Q 003305 565 RETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGP 644 (832)
Q Consensus 565 rEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~ 644 (832)
|||+++.. .+.+
T Consensus 376 reti~~g~---------------~~~~----------------------------------------------------- 387 (600)
T PRK05433 376 EVTLTDGE---------------VIEV----------------------------------------------------- 387 (600)
T ss_pred EEEEeCCc---------------EEEE-----------------------------------------------------
Confidence 99987521 0000
Q ss_pred ceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCe
Q 003305 645 NMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPR 724 (832)
Q Consensus 645 ~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~ 724 (832)
.| | .|+| |+++.+ +
T Consensus 388 ---~~--------------------------p-~~~p---------------ds~~~~---------------------~ 401 (600)
T PRK05433 388 ---DN--------------------------P-SKLP---------------DPGKIE---------------------E 401 (600)
T ss_pred ---EC--------------------------c-ccCC---------------Cccccc---------------------e
Confidence 00 1 1222 333221 8
Q ss_pred eeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhh-cCccHHhhhhCCCceeeeeEeccee
Q 003305 725 LLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWD 803 (832)
Q Consensus 725 LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~ 803 (832)
||||||+++|.+|++|+|+||++|++|||++++++..+ +...|+|.+|++|+ ++|.++|||+|+|.|+|.++|+||+
T Consensus 402 llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~--~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~ 479 (600)
T PRK05433 402 IEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG--NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYR 479 (600)
T ss_pred EECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC--CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcc
Confidence 99999999999999999999999999999999999765 37999999999999 9999999999999999999999999
Q ss_pred ec---------CCCCCCC----------chHHHHHHHHHHH
Q 003305 804 MM---------SSDPLEP----------GTQAAQLVADIRK 825 (832)
Q Consensus 804 ~~---------~~~~~~~----------~~~a~~~~~~~r~ 825 (832)
+. .++|.|. .+.+++++++.+.
T Consensus 480 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 520 (600)
T PRK05433 480 ESDLVKLDILINGEPVDALSFIVHRDKAYERGRALVEKLKE 520 (600)
T ss_pred cccEEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHh
Confidence 85 3444442 2356777666553
No 19
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=9.7e-73 Score=656.88 Aligned_cols=486 Identities=27% Similarity=0.434 Sum_probs=390.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
++|||+|+||+|||||||+++|++.+|.+++...+ .+++|+.++|++||+|+.++.+++.|.. .+++.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~-----------~~g~~ 69 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMR-EQVLDSMDLERERGITIKAQAVRLNYKA-----------KDGET 69 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccccc-ccccCCChHHHhcCCCeeeeEEEEEEEc-----------CCCCE
Confidence 68999999999999999999999999988764333 5789999999999999999999888841 12346
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHH
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (832)
+.++|||||||.+|..++.++++.||++|+|+|+++|++.|+...|..+...++|+++|+||+|+. +.+.++..+.
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~----~~~~~~~~~e 145 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLP----SADPERVKKE 145 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCC----ccCHHHHHHH
Confidence 899999999999999999999999999999999999999999999888888899999999999987 6553332222
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCce
Q 003305 178 FSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKW 257 (832)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~ 257 (832)
+.+ .+.. . + ..+...|+..|.
T Consensus 146 l~~-------~lg~---~--------~--~~vi~vSAktG~--------------------------------------- 166 (595)
T TIGR01393 146 IEE-------VIGL---D--------A--SEAILASAKTGI--------------------------------------- 166 (595)
T ss_pred HHH-------HhCC---C--------c--ceEEEeeccCCC---------------------------------------
Confidence 211 1110 0 0 011122221110
Q ss_pred EecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHHHHH
Q 003305 258 TTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMI 337 (832)
Q Consensus 258 ~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~ 337 (832)
| ++.||+.++
T Consensus 167 --------------------------------------------G--------------------------I~~Lle~I~ 176 (595)
T TIGR01393 167 --------------------------------------------G--------------------------IEEILEAIV 176 (595)
T ss_pred --------------------------------------------C--------------------------HHHHHHHHH
Confidence 0 145778888
Q ss_pred hcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCC
Q 003305 338 FHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYV 417 (832)
Q Consensus 338 ~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~ 417 (832)
+++|+|. .++++|+.++|||++.+++.|. ++++||++|+|++||.|+++.
T Consensus 177 ~~lp~p~-------------------------~~~~~pl~~~V~~~~~d~~~G~-v~~~rV~sG~lk~Gd~v~~~~---- 226 (595)
T TIGR01393 177 KRVPPPK-------------------------GDPDAPLKALIFDSHYDNYRGV-VALVRVFEGTIKPGDKIRFMS---- 226 (595)
T ss_pred HhCCCCC-------------------------CCCCCCeEEEEEEEEEeCCCcE-EEEEEEECCEEecCCEEEEec----
Confidence 8999983 1356899999999999999998 999999999999999999753
Q ss_pred CCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe-c---cccccccce-eeecCCCCCcccccccccCCCceEEEE
Q 003305 418 PGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVA 492 (832)
Q Consensus 418 ~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~-g---l~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~~ 492 (832)
.+.. ++|.+|+.+.+.. .+++++.||||+++. | ++++ ++| ||++...+...++++++++ +|+++++
T Consensus 227 ~~~~-----~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~v~~~ 297 (595)
T TIGR01393 227 TGKE-----YEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDV--RVGDTITHVKNPAKEPLPGFKEV-KPMVFAG 297 (595)
T ss_pred CCCe-----eEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCcc--CCCCEEECCCCccccCCCCCcCC-CcEEEEE
Confidence 2222 7999999776655 999999999998885 4 4445 677 9988762112467777775 9999999
Q ss_pred EEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEE-----ecChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEeee
Q 003305 493 VQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVA-----GAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567 (832)
Q Consensus 493 Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~-----g~GelHLei~~~~L~~~f~~~v~v~~s~p~V~yrEt 567 (832)
|+|.+.+|.++|.+||++|.+|||||.++. +|+|.++. |||+|||||+++||+++| |+++.+++|+|+||||
T Consensus 298 i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~-e~~~~l~~g~r~g~lG~lHlei~~erL~re~--~~~v~~~~P~V~Yret 374 (595)
T TIGR01393 298 LYPIDTEDYEDLRDALEKLKLNDASLTYEP-ESSPALGFGFRCGFLGLLHMEIIQERLEREF--NLDLITTAPSVIYRVY 374 (595)
T ss_pred EEECCcccHHHHHHHHHHHhccCCeEEEEe-cCCcccccccEEeeeeHHHHHHHHHHHHHHh--CCeeEEecCEEEEEEE
Confidence 999999999999999999999999999974 78887777 499999999999999999 9999999999999999
Q ss_pred ccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCceE
Q 003305 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMV 647 (832)
Q Consensus 568 i~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~~~ 647 (832)
+.+.. .+.++
T Consensus 375 i~~g~---------------~~~~~------------------------------------------------------- 384 (595)
T TIGR01393 375 LTNGE---------------VIEVD------------------------------------------------------- 384 (595)
T ss_pred ecCCc---------------EEEEE-------------------------------------------------------
Confidence 86421 01010
Q ss_pred EeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeeee
Q 003305 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 727 (832)
Q Consensus 648 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlE 727 (832)
| | .|+|+.++ -|.|||
T Consensus 385 -~--------------------------p-~~~p~~~~------------------------------------~~~llE 400 (595)
T TIGR01393 385 -N--------------------------P-SDLPDPGK------------------------------------IEHVEE 400 (595)
T ss_pred -C--------------------------c-ccCCCccc------------------------------------ccceeC
Confidence 0 2 25665441 178999
Q ss_pred eeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhh-cCccHHhhhhCCCceeeeeEecceee--
Q 003305 728 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDM-- 804 (832)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~-- 804 (832)
|||+++|.+|++|+|+||++|++|||++++++..++ ++..|+|.+|++|+ ++|.++|||+|+|.|+|.++|+||++
T Consensus 401 P~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~-~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~ 479 (595)
T TIGR01393 401 PYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDP-NRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPSD 479 (595)
T ss_pred CeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCC-CeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccccc
Confidence 999999999999999999999999999999997543 37899999999997 99999999999999999999999997
Q ss_pred -------cCCCCCCC----------chHHHHHHHHHHH
Q 003305 805 -------MSSDPLEP----------GTQAAQLVADIRK 825 (832)
Q Consensus 805 -------~~~~~~~~----------~~~a~~~~~~~r~ 825 (832)
+.++|.|. ...+++++++.+.
T Consensus 480 ~~~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~~ 517 (595)
T TIGR01393 480 LVKLDILINGEPVDALSFIVHRDKAYSRGREICEKLKE 517 (595)
T ss_pred eEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHh
Confidence 34444442 2356777766554
No 20
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-65 Score=542.71 Aligned_cols=466 Identities=26% Similarity=0.461 Sum_probs=404.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
..+|||||++|+|||||||+++||..+|.......-..++||+...|+||||||-++.+.+.|+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~---------------- 66 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN---------------- 66 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC----------------
Confidence 4689999999999999999999999999887642223579999999999999999999999996
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHH
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (832)
+++|||+|||||.||-+|+++.+...|+++|+|||.+|+++||+.+++.|.+.++++|+|+||+|++ ++.|+++..
T Consensus 67 ~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp----~Arp~~Vvd 142 (603)
T COG1217 67 GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP----DARPDEVVD 142 (603)
T ss_pred CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC----CCCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 999999888
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003305 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (832)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (832)
..-+++-++.+.-.+ ..| ++.++||..||+-. ++..
T Consensus 143 ~vfDLf~~L~A~deQ--------LdF-----PivYAS~~~G~a~~-----------------------------~~~~-- 178 (603)
T COG1217 143 EVFDLFVELGATDEQ--------LDF-----PIVYASARNGTASL-----------------------------DPED-- 178 (603)
T ss_pred HHHHHHHHhCCChhh--------CCC-----cEEEeeccCceecc-----------------------------Cccc--
Confidence 877777766554322 112 78899999998531 0000
Q ss_pred eEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHHHH
Q 003305 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (832)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (832)
.. +. ..+|+++|
T Consensus 179 ------~~-------------------------------------------~~-------------------m~pLfe~I 190 (603)
T COG1217 179 ------EA-------------------------------------------DD-------------------MAPLFETI 190 (603)
T ss_pred ------cc-------------------------------------------cc-------------------hhHHHHHH
Confidence 00 00 15789999
Q ss_pred HhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCC
Q 003305 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (832)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~ 416 (832)
++|.|+|. .|.++||.++|+-+-.+++.|+ ++.+||++|++++|+.|.++...
T Consensus 191 ~~hvp~P~-------------------------~~~d~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~~q~V~~i~~~- 243 (603)
T COG1217 191 LDHVPAPK-------------------------GDLDEPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKPNQQVALIKSD- 243 (603)
T ss_pred HHhCCCCC-------------------------CCCCCCeEEEEEeeccccccce-eEEEEEecCcccCCCeEEEEcCC-
Confidence 99999993 3568999999999999999998 99999999999999999988532
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEe
Q 003305 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 495 (832)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~~Iep 495 (832)
+.. ...||++++-+.|-++.++++|.||||+||+|+++. ..| |+|++. .+.+++.+... +|.+++.+..
T Consensus 244 --g~~---~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~--~igdTi~d~~--~~~aLp~l~iD-ePTlsMtf~v 313 (603)
T COG1217 244 --GTT---ENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI--NIGDTICDPD--NPEALPALSVD-EPTLSMTFSV 313 (603)
T ss_pred --CcE---EeeEEEeeeeccceeeeecccccccCEEEEcCcccc--cccccccCCC--CccCCCCcccC-CCceEEEEEe
Confidence 222 247999999999999999999999999999999997 456 999988 67788888876 8999998876
Q ss_pred CCC---------CChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEe
Q 003305 496 KVA---------SDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 565 (832)
Q Consensus 496 ~~~---------~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p~V~yr 565 (832)
.+. -...++.+.|.+-.+.+-+|+|+.- +-..+.++|.|||||-|+++.+||+ |.++.+|.|+|.||
T Consensus 314 N~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE---GfEl~VsrP~Vi~k 390 (603)
T COG1217 314 NDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE---GFELQVSRPEVIIK 390 (603)
T ss_pred cCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc---ceEEEecCceEEEE
Confidence 654 1567899999999999999999865 5588999999999999999999999 99999999999999
Q ss_pred eeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCc
Q 003305 566 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 645 (832)
Q Consensus 566 Eti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~ 645 (832)
| +.+
T Consensus 391 e-idG--------------------------------------------------------------------------- 394 (603)
T COG1217 391 E-IDG--------------------------------------------------------------------------- 394 (603)
T ss_pred e-cCC---------------------------------------------------------------------------
Confidence 8 210
Q ss_pred eEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCee
Q 003305 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725 (832)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~L 725 (832)
..
T Consensus 395 ------------------------------------------------------------------------------~~ 396 (603)
T COG1217 395 ------------------------------------------------------------------------------VK 396 (603)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 01
Q ss_pred eeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeec
Q 003305 726 LEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM 805 (832)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~ 805 (832)
.||+=.+.|.||+++.|.|+..|..|+|...+|.+.++ ++..+.-.+|..-+.||.++.-++|+|.|.....|+||++.
T Consensus 397 ~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~-G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~ 475 (603)
T COG1217 397 CEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDGK-GRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPV 475 (603)
T ss_pred cCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCCC-CeEEEEEEccCcceeccchheeeccccceeeeecccccccc
Confidence 57888888999999999999999999999999998654 69999999999999999999999999999999999999999
Q ss_pred CCCC
Q 003305 806 SSDP 809 (832)
Q Consensus 806 ~~~~ 809 (832)
.++.
T Consensus 476 ~g~i 479 (603)
T COG1217 476 KGEI 479 (603)
T ss_pred cccc
Confidence 8853
No 21
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=7.1e-66 Score=590.46 Aligned_cols=437 Identities=23% Similarity=0.306 Sum_probs=345.6
Q ss_pred hcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc------CCceEeecCcccccccCceeeeeeEEEEeeccchhh
Q 003305 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV------AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDAL 86 (832)
Q Consensus 13 ~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~------~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~ 86 (832)
+....++|||+|+||+|||||||+++|++.+|.+...- .|...++|+.+.|++||+|+.++...+.|.
T Consensus 4 ~~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~------ 77 (526)
T PRK00741 4 AQEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR------ 77 (526)
T ss_pred cchhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC------
Confidence 34456899999999999999999999999999886520 122346899999999999999999999986
Q ss_pred ccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCccccc
Q 003305 87 KSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLE 166 (832)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~ 166 (832)
++++|+||||||.||..++.++++.+|+||+|||+++|+..+++.+|+++...++|+++|+||||+.
T Consensus 78 ----------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~--- 144 (526)
T PRK00741 78 ----------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD--- 144 (526)
T ss_pred ----------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc---
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccC--ccceeeehhhHHHHhhhccCCChHHHHHHh
Q 003305 167 LQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERL 244 (832)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~ 244 (832)
++++.++.+.+++.+. . .+...++|++.+ +.|. +|+.....+.
T Consensus 145 -~a~~~~~l~~i~~~l~---~---------------~~~p~~~Pig~~~~f~Gv----------------vdl~~~~~~~ 189 (526)
T PRK00741 145 -GREPLELLDEIEEVLG---I---------------ACAPITWPIGMGKRFKGV----------------YDLYNDEVEL 189 (526)
T ss_pred -ccCHHHHHHHHHHHhC---C---------------CCeeEEeccccCCceeEE----------------EEeecceeee
Confidence 8875554444433321 1 122336677665 3333 3444433343
Q ss_pred hcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhh--------hhHH
Q 003305 245 WGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDL--------MGKA 316 (832)
Q Consensus 245 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~--------~~~~ 316 (832)
|.+ ..+ +. .++.+.+++.|++++++||++ ..+ +|+.. ....
T Consensus 190 ~~~-----~~~-------~~---------------~~~~e~~~~~dd~lle~~l~~--~~~--~~l~~~lel~~~~~~~~ 238 (526)
T PRK00741 190 YQP-----GEG-------HT---------------IQEVEIIKGLDNPELDELLGE--DLA--EQLREELELVQGASNEF 238 (526)
T ss_pred ccc-----CCC-------Cc---------------ceeeeeccCCCHHHHHHHhcc--cHH--HHHHHHHHhhhhcccch
Confidence 311 000 00 022445666778888888875 211 22210 0122
Q ss_pred HHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeee
Q 003305 317 LMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIP 385 (832)
Q Consensus 317 l~~~i~-~~~~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~ 385 (832)
..+++. ++++|+ +++|||+|++++|+|.++... .....+ .+.|++|+|||+.+
T Consensus 239 ~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~---------------~~~~~~-~~~~~~~~VFK~~~ 302 (526)
T PRK00741 239 DLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD---------------EREVEP-TEEKFSGFVFKIQA 302 (526)
T ss_pred hHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc---------------ceeecC-CCCceEEEEEEEEe
Confidence 244444 688997 799999999999999754321 001112 34679999999984
Q ss_pred ---cCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccc
Q 003305 386 ---ASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFIT 462 (832)
Q Consensus 386 ---~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~ 462 (832)
+++.|+ ++|+|||||+|++|+.|++ .+++++ +|+++++.++|.++.+|++|.|||||++.|++++
T Consensus 303 ~m~~~~~gr-lafvRV~sG~l~~g~~v~~----~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~-- 370 (526)
T PRK00741 303 NMDPKHRDR-IAFVRVCSGKFEKGMKVRH----VRTGKD-----VRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI-- 370 (526)
T ss_pred cCCCCcCce-EEEEEEeccEECCCCEEEe----ccCCce-----EEecceEEEecCCceECceeCCCCEEEEECCCCC--
Confidence 457777 9999999999999999994 444443 8999999999999999999999999999999998
Q ss_pred cce-eeecCCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHH
Q 003305 463 KNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEI 540 (832)
Q Consensus 463 ~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei 540 (832)
++| ||++.+ +..+++++++ +|+++++|+|+++.|.+||.+||++|++||| +++..+ +|||++|+|||+||||+
T Consensus 371 ~~GDTL~~~~---~~~~~~i~~~-~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV 445 (526)
T PRK00741 371 QIGDTFTQGE---KLKFTGIPNF-APELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEV 445 (526)
T ss_pred ccCCCccCCC---ccccCCCCCC-CccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHH
Confidence 788 998754 5667888886 9999999999999999999999999999995 999998 99999999999999999
Q ss_pred HHHHHHhhcCCCeeEEEcCcEEeEeeecc
Q 003305 541 CLKDLQDDFMGGAEIIKSDPVVSFRETVL 569 (832)
Q Consensus 541 ~~~~L~~~f~~~v~v~~s~p~V~yrEti~ 569 (832)
+++||+++| |+++.+++|+|++-.-|.
T Consensus 446 ~~~RL~~ey--~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 446 VAHRLKNEY--NVEAIYEPVGVATARWVE 472 (526)
T ss_pred HHHHHHHHh--CCEEEEecCCccEEEEEe
Confidence 999999999 999999999999877664
No 22
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-64 Score=539.60 Aligned_cols=471 Identities=30% Similarity=0.420 Sum_probs=387.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+++||++|++|+|||||||.++||..+|.+++. .+..+++|....||||||||++...++.|. +++
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~-~~q~q~LDkl~vERERGITIkaQtasify~-------------~~~ 123 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN-IGQEQVLDKLQVERERGITIKAQTASIFYK-------------DGQ 123 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCC-CchhhhhhhhhhhhhcCcEEEeeeeEEEEE-------------cCC
Confidence 789999999999999999999999999988765 556789999999999999999999999997 245
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHH
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (832)
.+.+|+||||||+||..|+.+.+..||||+|||||.+|+++||...+..|.+.++.+|.|+||+|++ .++++.+..
T Consensus 124 ~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp----~adpe~V~~ 199 (650)
T KOG0462|consen 124 SYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP----SADPERVEN 199 (650)
T ss_pred ceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC----CCCHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999 999888877
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003305 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (832)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (832)
.+.+++... |. .+.+.|+..||+
T Consensus 200 q~~~lF~~~------------------~~--~~i~vSAK~G~~------------------------------------- 222 (650)
T KOG0462|consen 200 QLFELFDIP------------------PA--EVIYVSAKTGLN------------------------------------- 222 (650)
T ss_pred HHHHHhcCC------------------cc--ceEEEEeccCcc-------------------------------------
Confidence 766654421 11 344555544441
Q ss_pred eEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHHHH
Q 003305 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (832)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (832)
+..+|++|
T Consensus 223 ------------------------------------------------------------------------v~~lL~AI 230 (650)
T KOG0462|consen 223 ------------------------------------------------------------------------VEELLEAI 230 (650)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 13478899
Q ss_pred HhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCC
Q 003305 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (832)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~ 416 (832)
++.+|+|. ...++||.+++|..+.|.+.|. ++++||..|.+++||.|..+.
T Consensus 231 I~rVPpP~-------------------------~~~d~plr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~~~~--- 281 (650)
T KOG0462|consen 231 IRRVPPPK-------------------------GIRDAPLRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQSAA--- 281 (650)
T ss_pred HhhCCCCC-------------------------CCCCcchHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEEEee---
Confidence 99999993 2357899999999999999998 999999999999999998652
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEec-cccccccce-eeecCCC-CCcccccccccCCCceEEEEE
Q 003305 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG-LDQFITKNA-TLTNEKE-VDAHPIRAMKFSVSPVVRVAV 493 (832)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~g-l~~~~~~tg-Tl~~~~~-~~~~~~~~~~~~~~Pv~~~~I 493 (832)
++++ .+.+.-.++.+..-...++....+|+||+..| ++.. ..| |+++... .....++..+. ..|++++..
T Consensus 282 -t~~~---yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea--~IGdTi~~~~~~~~v~tl~~~~~-~~pMvFvg~ 354 (650)
T KOG0462|consen 282 -TGKS---YEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEA--QIGDTIAHKSVTKAVETLPGFEP-TKPMVFVGL 354 (650)
T ss_pred -cCcc---eEeEEeEEeccCceeeeeecccccceeEecccccccc--cccceeeecccCcccCcCCCCCC-CcceEEecc
Confidence 2222 23566666666666677777788888888877 7776 556 8887651 12334555554 489999999
Q ss_pred EeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCc----ceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEeeecc
Q 003305 494 QCKVASDLPKLVEGLKRLAKSDPMVVCTIEESG----EHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 569 (832)
Q Consensus 494 ep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etg----e~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p~V~yrEti~ 569 (832)
.|.+.+|...|..++.+|+.+|+++.+..+.++ -+.+++.|.|||+|.++||+++| |.++.+++|.|+||=-..
T Consensus 355 fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey--g~elivt~PtV~Yr~~~~ 432 (650)
T KOG0462|consen 355 FPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY--GAELIVTPPTVPYRVVYS 432 (650)
T ss_pred ccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc--CceeeecCCcceEEEEec
Confidence 999999999999999999999999999887544 46999999999999999999999 999999999999985322
Q ss_pred ccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCceEEe
Q 003305 570 EKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVD 649 (832)
Q Consensus 570 ~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~~~~~ 649 (832)
+.. . +.+..|.
T Consensus 433 ~~~-----------~-------------------------------------------------~~i~np~--------- 443 (650)
T KOG0462|consen 433 NGD-----------E-------------------------------------------------ILISNPA--------- 443 (650)
T ss_pred CCc-----------e-------------------------------------------------eeecChh---------
Confidence 110 0 0111111
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeeeeee
Q 003305 650 MCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPV 729 (832)
Q Consensus 650 ~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi 729 (832)
.+| |..... -.|||+
T Consensus 444 -----------------------------~fp---------------~~~~v~---------------------~~lEP~ 458 (650)
T KOG0462|consen 444 -----------------------------LFP---------------DPSDVK---------------------EFLEPY 458 (650)
T ss_pred -----------------------------hCC---------------Ccccch---------------------hhcCce
Confidence 011 111111 139999
Q ss_pred EEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcC-ccHHhhhhCCCceeeeeEecceeecCCC
Q 003305 730 YMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFG-FSGTLRAATSGQAFPQCVFDHWDMMSSD 808 (832)
Q Consensus 730 ~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~g-y~~~Lrs~T~G~~~~~~~f~~y~~~~~~ 808 (832)
...+|.+|+||+|.|+..++.|||...++...++ +...++-++|++|+.+ |-..|.|.|+|.|+|..+|++|+ ++|
T Consensus 459 v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~-nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~--~sd 535 (650)
T KOG0462|consen 459 VEATIITPDEYVGAVIELCSERRGEQKDMTYIDG-NRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ--ASD 535 (650)
T ss_pred EEEEEECcHHHHHHHHHHHHHhhhheecceeccC-CeEEEEEecChHHHHHHHHHHHhccccceeEEeecccccc--ccc
Confidence 9999999999999999999999999999998776 4889999999999998 99999999999999999999999 444
Q ss_pred C
Q 003305 809 P 809 (832)
Q Consensus 809 ~ 809 (832)
.
T Consensus 536 L 536 (650)
T KOG0462|consen 536 L 536 (650)
T ss_pred c
Confidence 3
No 23
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=2.4e-63 Score=569.74 Aligned_cols=435 Identities=20% Similarity=0.289 Sum_probs=331.1
Q ss_pred hhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc----CC--ceEeecCcccccccCceeeeeeEEEEeeccchh
Q 003305 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----AG--DVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (832)
Q Consensus 12 ~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----~g--~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (832)
++....++|||+|+||+|+|||||+++|++.+|.+...- .| ..+++|+.+.|++||+|+.++...+.|.
T Consensus 4 ~~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~----- 78 (527)
T TIGR00503 4 LLKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR----- 78 (527)
T ss_pred hhhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC-----
Confidence 455667899999999999999999999999999886520 11 1367999999999999999999999886
Q ss_pred hccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccc
Q 003305 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL 165 (832)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~ 165 (832)
+++++|||||||.+|..++.++++.+|++|+|||++.|+..+++.+|+.+...++|+++|+||+|+.
T Consensus 79 -----------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~-- 145 (527)
T TIGR00503 79 -----------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD-- 145 (527)
T ss_pred -----------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc--
Confidence 8999999999999999999999999999999999999999999999999988999999999999998
Q ss_pred cccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccC--ccceeeehhhHHHHhhhccCCChHHHHHH
Q 003305 166 ELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMER 243 (832)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~ 243 (832)
+++++++.+.+++.+.. .+...++|++.+ +.|+ +|......+
T Consensus 146 --~~~~~~ll~~i~~~l~~------------------~~~~~~~PIg~~~~f~gv----------------~d~l~~~~~ 189 (527)
T TIGR00503 146 --IRDPLELLDEVENELKI------------------NCAPITWPIGCGKLFKGV----------------YHLLKDETY 189 (527)
T ss_pred --CCCHHHHHHHHHHHhCC------------------CCccEEEEecCCCceeEE----------------EEcccCcce
Confidence 78866655555443321 112235565544 2333 233332233
Q ss_pred hhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHH------HHhcCCcCChHHHhhhhHHH
Q 003305 244 LWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPM------LQKLGVTMKSEEKDLMGKAL 317 (832)
Q Consensus 244 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~------l~~~~~~l~~~el~~~~~~l 317 (832)
+|.+ ...+.....+. ...... .+.+.++.. +.++++ +++.+.+++.
T Consensus 190 ~y~~----~~~~~~~~~~~-~~~~~~-----------~~~e~~~~~--~~~~~~~~~le~~~~~~~~~~~---------- 241 (527)
T TIGR00503 190 LYQS----GTGGTIQAVRQ-VKGLNN-----------PALDSAVGS--DLAQQLRDELELVEGASNEFDL---------- 241 (527)
T ss_pred ecCc----cCCCceeEeeh-hccCCC-----------hhhhhhhhH--HHHHHHHHHHHHHhhhccccCH----------
Confidence 3311 00111111000 000000 001111111 112222 2222222321
Q ss_pred HHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeee-
Q 003305 318 MKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIP- 385 (832)
Q Consensus 318 ~~~i~-~~~~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~- 385 (832)
+++. ++++|+ ++.|||++++|+|+|.++... .....+ .++|++|+|||+.+
T Consensus 242 -~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~---------------~~~~~~-~~~~~~~~VFK~~~~ 304 (527)
T TIGR00503 242 -AAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD---------------TRTVEP-TEEKFSGFVFKIQAN 304 (527)
T ss_pred -HHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC---------------ceecCC-CCCCeeEEEEEEEec
Confidence 2222 688897 899999999999999754311 001122 45789999999998
Q ss_pred -c-CCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEecccccccc
Q 003305 386 -A-SDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITK 463 (832)
Q Consensus 386 -~-~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~ 463 (832)
| ++.|+ ++|+|||||+|++|++|++ .+++++ +|+++++.++|.++++|++|.|||||++.|++++ +
T Consensus 305 mdp~~~gr-iaf~RV~sG~l~~g~~v~~----~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~--~ 372 (527)
T TIGR00503 305 MDPKHRDR-VAFMRVVSGKYEKGMKLKH----VRTGKD-----VVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI--Q 372 (527)
T ss_pred cCcccCce-EEEEEEeeeEEcCCCEEEe----cCCCCc-----EEecchhhhhcCCceEcceeCCCCEEEEECCCCc--c
Confidence 6 47887 9999999999999999994 444444 8999999999999999999999999999999998 7
Q ss_pred ce-eeecCCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHH
Q 003305 464 NA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEIC 541 (832)
Q Consensus 464 tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~ 541 (832)
+| |||+.. ...+++++++ +|+++++|+|+++.|.+||.+||++|++||| +++.++ +|+|++|+||||||||++
T Consensus 373 ~GDtl~~~~---~~~~~~i~~~-~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~ 447 (527)
T TIGR00503 373 IGDTFTQGE---KIKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVV 447 (527)
T ss_pred cCCEecCCC---ceeecCCCCC-CcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHH
Confidence 88 999844 5667788876 9999999999999999999999999999998 999988 999999999999999999
Q ss_pred HHHHHhhcCCCeeEEEcCcEEeE
Q 003305 542 LKDLQDDFMGGAEIIKSDPVVSF 564 (832)
Q Consensus 542 ~~~L~~~f~~~v~v~~s~p~V~y 564 (832)
++||+++| ||++.+++|+|+.
T Consensus 448 ~~RL~~ey--~v~v~~~~~~v~~ 468 (527)
T TIGR00503 448 VYRLKEEY--NVEARYEPVNVAT 468 (527)
T ss_pred HHHHHHHh--CCeEEEeCCCceE
Confidence 99999999 9999999999984
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.5e-59 Score=495.27 Aligned_cols=471 Identities=28% Similarity=0.433 Sum_probs=381.5
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
..+++||.+|++|.|||||||.++|+..+|.++.+... ..++|++..|+||||||+...+.+.|.. .+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~-~Q~LDsMdiERERGITIKaq~v~l~Yk~-----------~~ 72 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR-AQVLDSMDIERERGITIKAQAVRLNYKA-----------KD 72 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH-HHhhhhhhhHhhcCceEEeeEEEEEEEe-----------CC
Confidence 45689999999999999999999999999998775322 4689999999999999999999999973 34
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHH
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~ 174 (832)
++.|.+||||||||+||.-|+.+++..|.||+|||||+.|++.||..-.-+|...++-+|-|+||+|++ .++++.+
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP----~Adperv 148 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP----AADPERV 148 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC----CCCHHHH
Confidence 568999999999999999999999999999999999999999999988888999999999999999999 9998887
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCC
Q 003305 175 YQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (832)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~ 254 (832)
.+.+++++.- . + ...+..|+..|
T Consensus 149 k~eIe~~iGi-d-----------------~--~dav~~SAKtG------------------------------------- 171 (603)
T COG0481 149 KQEIEDIIGI-D-----------------A--SDAVLVSAKTG------------------------------------- 171 (603)
T ss_pred HHHHHHHhCC-C-----------------c--chheeEecccC-------------------------------------
Confidence 7666654321 0 0 01111122111
Q ss_pred CceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHH
Q 003305 255 KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLE 334 (832)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 334 (832)
+| +..+|+
T Consensus 172 ----------------------------------------------~g--------------------------I~~iLe 179 (603)
T COG0481 172 ----------------------------------------------IG--------------------------IEDVLE 179 (603)
T ss_pred ----------------------------------------------CC--------------------------HHHHHH
Confidence 11 145788
Q ss_pred HHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCC
Q 003305 335 MMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGP 414 (832)
Q Consensus 335 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~ 414 (832)
+|++.+|+|. .++++|+-|++|..+.|++.|- ++++||+.|++++||.+.+++
T Consensus 180 ~Iv~~iP~P~-------------------------g~~~~pLkALifDS~yD~Y~GV-v~~vRi~dG~ik~gdki~~m~- 232 (603)
T COG0481 180 AIVEKIPPPK-------------------------GDPDAPLKALIFDSWYDNYLGV-VVLVRIFDGTLKKGDKIRMMS- 232 (603)
T ss_pred HHHhhCCCCC-------------------------CCCCCcceEEEEeccccccceE-EEEEEEeeceecCCCEEEEEe-
Confidence 9999999992 3578999999999999999998 999999999999999999875
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE-ecccccc-ccce-eeecCCCCCcccccccccCCCceEEE
Q 003305 415 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM-VGLDQFI-TKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 491 (832)
Q Consensus 415 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i-~gl~~~~-~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 491 (832)
++++ ..|.++.++.- +...++++.||+++-+ +|+++.- ++.| |++....+...++++.+.. .|++++
T Consensus 233 ---tg~~-----y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~-~P~Vf~ 302 (603)
T COG0481 233 ---TGKE-----YEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEV-KPMVFA 302 (603)
T ss_pred ---cCCE-----EEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcC-CceEEE
Confidence 2332 56777776654 7788999999999755 3544421 1455 7764433356788888875 999999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCC---c-ceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEeee
Q 003305 492 AVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEES---G-EHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567 (832)
Q Consensus 492 ~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~et---g-e~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p~V~yrEt 567 (832)
.+.|.+..|.+.|.+||.||...|.+|.++.+-+ | -+-.+.+|-|||||+.+||+|+| ++++-...|.|.|+=.
T Consensus 303 GlyPid~~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf--~ldlI~TaPsV~Y~v~ 380 (603)
T COG0481 303 GLYPVDSDDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVYKVE 380 (603)
T ss_pred eecccChhHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhh--CcceEecCCceEEEEE
Confidence 9999999999999999999999999999976532 2 46788899999999999999999 9999999999999865
Q ss_pred ccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCceE
Q 003305 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMV 647 (832)
Q Consensus 568 i~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~~~ 647 (832)
.++... +..-.|.
T Consensus 381 ~~~g~~------------------------------------------------------------~~i~NPs------- 393 (603)
T COG0481 381 LTDGEE------------------------------------------------------------IEVDNPS------- 393 (603)
T ss_pred EcCCcE------------------------------------------------------------EEecChH-------
Confidence 433210 0000110
Q ss_pred EeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeeee
Q 003305 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 727 (832)
Q Consensus 648 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlE 727 (832)
.+| |.... -.+.|
T Consensus 394 -------------------------------~~P---------------~~~~I---------------------~~i~E 406 (603)
T COG0481 394 -------------------------------DLP---------------DPNKI---------------------EEIEE 406 (603)
T ss_pred -------------------------------hCC---------------Chhhh---------------------heeeC
Confidence 011 00000 03589
Q ss_pred eeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhh-cCccHHhhhhCCCceeeeeEecceee
Q 003305 728 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDM 804 (832)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (832)
|+.++.|.+|++|+|.||...+.+||...+++..+. +...+.-.+|++|. ++|-+.|.|.|+|.|+|..+|.+|++
T Consensus 407 P~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~-~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~ 483 (603)
T COG0481 407 PYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQ-NRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRE 483 (603)
T ss_pred ceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecC-ceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccc
Confidence 999999999999999999999999999999987653 58899999999997 69999999999999999999999986
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-52 Score=436.87 Aligned_cols=434 Identities=24% Similarity=0.348 Sum_probs=316.8
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc--------eEeecCcccccccCceeeeeeEEEEeeccchhhc
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~--------~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (832)
..+-|+.|||.|+|+|||||++.||...|+|.. +|. ...+|++..|++|||++.++...|.|.
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~--AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~------- 79 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQE--AGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA------- 79 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhh--cceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC-------
Confidence 356689999999999999999999999888866 443 458999999999999999999999986
Q ss_pred cccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccc
Q 003305 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (832)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~ 167 (832)
++.+||+|||||.||...+.+.|..+|.||.||||..|+.+||..+++-|+..++|++=|||||||.
T Consensus 80 ---------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~---- 146 (528)
T COG4108 80 ---------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDRE---- 146 (528)
T ss_pred ---------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccc----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcC
Q 003305 168 QVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 247 (832)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~ 247 (832)
.-+|-++...+++.+. +.+.+.++|+|.|. .|...|.-..+ . -.+
T Consensus 147 ~rdP~ELLdEiE~~L~------------------i~~~PitWPIG~gk--------~F~Gvy~l~~~----~--v~~--- 191 (528)
T COG4108 147 GRDPLELLDEIEEELG------------------IQCAPITWPIGMGK--------DFKGVYHLYND----E--VEL--- 191 (528)
T ss_pred cCChHHHHHHHHHHhC------------------cceecccccccCCc--------ccceeeeeccC----E--EEE---
Confidence 8888876665555433 12334477888773 22222321100 0 011
Q ss_pred cccCcCC---CceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhc
Q 003305 248 NFFDPAT---KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQT 324 (832)
Q Consensus 248 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 324 (832)
|.+.. +......++- . .+...+..=+ .+++.+.++ -++ +.+-+-+.+.+ ..+. +.
T Consensus 192 --y~~~~~~~~~~~~~~~~~-~-~p~~~~~l~~---~~~~~~~ee-~EL----~~~a~~~Fd~~-------~fl~---G~ 249 (528)
T COG4108 192 --YESGHTDQERRADIVKGL-D-NPELDALLGE---DLAEQLREE-LEL----VQGAGNEFDLE-------AFLA---GE 249 (528)
T ss_pred --eccCCCccccccccccCC-C-ChhHHhhhch---HHHHHHHHH-HHH----HHhhccccCHH-------HHhc---CC
Confidence 11111 0000000000 0 0000000000 111111110 011 11111112111 1111 45
Q ss_pred cccc----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCC-CCCeEEEEEEeeecCCCCc--
Q 003305 325 WLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP-NGPLMLYVSKMIPASDKGR-- 391 (832)
Q Consensus 325 ~~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~va~VfK~~~~~~~g~-- 391 (832)
+.|| ++.+||+++++.|+|..++... ....+ +..|++||||+....+..+
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~-----------------~~v~p~e~kfsGFVFKIQANMDp~HRD 312 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT-----------------REVEPTEDKFSGFVFKIQANMDPKHRD 312 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc-----------------CcccCCCCccceEEEEEEcCCCccccc
Confidence 6665 8999999999999997543210 01122 3449999999998554332
Q ss_pred ceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecC
Q 003305 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNE 470 (832)
Q Consensus 392 ~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~ 470 (832)
+++|+||.||++.+|+.+. ..++|+. .+++.-..+++++++.|++|.||||+++..-... +.| |++..
T Consensus 313 RIAFmRv~SGkferGMkv~----h~rtGK~-----~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~--~IGDT~t~G 381 (528)
T COG4108 313 RIAFMRVCSGKFERGMKVT----HVRTGKD-----VKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTI--QIGDTFTEG 381 (528)
T ss_pred ceeEEEeccccccCCceee----eeecCCc-----eEecchHhhhhhhhhhhhhccCCCeEeccCCCce--eecceeecC
Confidence 3999999999999999998 4566655 7999999999999999999999999999754444 556 88866
Q ss_pred CCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChhhHHHHHHHHHhhcC
Q 003305 471 KEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFM 550 (832)
Q Consensus 471 ~~~~~~~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~ 550 (832)
. ...|++++.. .|-++..|..+++....+|.+||.+|++|--.--+....+.+.||...|.||+|++.+||+++|
T Consensus 382 e---~l~f~giP~F-aPE~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY- 456 (528)
T COG4108 382 E---KLKFTGIPNF-APELFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEY- 456 (528)
T ss_pred c---eeeecCCCCC-CHHHHHHHhcCChHHHHHHHHHHHHHhhcCeeEEEecCCCCCceEEeeeeeehHHHHHHHHhhh-
Confidence 4 6778888877 8999999999999999999999999999985444444488999999999999999999999999
Q ss_pred CCeeEEEcCcEE
Q 003305 551 GGAEIIKSDPVV 562 (832)
Q Consensus 551 ~~v~v~~s~p~V 562 (832)
++++.+.+..+
T Consensus 457 -~ve~~~e~~~~ 467 (528)
T COG4108 457 -NVEAVFEPVNF 467 (528)
T ss_pred -CCeEEEeeccc
Confidence 99998865433
No 26
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=6.1e-38 Score=322.33 Aligned_cols=204 Identities=62% Similarity=1.026 Sum_probs=183.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
|||+|+||+|||||||+++|++.+|.+.+...|..+++|+.++|++||+|++++.+++.|....+ ...+++++.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~------~~~~~~~~~ 74 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEE------DKADGNEYL 74 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcc------cccCCCceE
Confidence 89999999999999999999999998887767778899999999999999999999998863211 012345789
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHHHH
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFS 179 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~~ 179 (832)
++|||||||.+|..++..+++.+|+|++|+|+++|++.+++.+++++...++|+++|+||||+.+.+++.++++++.+++
T Consensus 75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~ 154 (222)
T cd01885 75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLA 154 (222)
T ss_pred EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhccCCCC-----CCeeEeecccceecccCccceeeehhhHHHHh
Q 003305 180 RVVENANVIMATYEDPLL-----GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 229 (832)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~-----~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 229 (832)
++++++|.++..+..+.. +.+.|+|..|||.|+|+.+||+|++++||++|
T Consensus 155 ~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~ 209 (222)
T cd01885 155 RIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIY 209 (222)
T ss_pred HHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchH
Confidence 999999999987643211 34679999999999999999999999999988
No 27
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=100.00 E-value=7.3e-38 Score=309.04 Aligned_cols=174 Identities=47% Similarity=0.857 Sum_probs=165.6
Q ss_pred CcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEec
Q 003305 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (832)
Q Consensus 559 ~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (832)
+|.|+|||||.+.+...+..+++++|+++|++++||++++.+.|++|.++..++.+.+.+.|..+||||..++++||+||
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 69999999999998878888999999999999999999999999999998888889999999999999999999999999
Q ss_pred cCCCCCceEEeccc----cccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHH
Q 003305 639 PETTGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 714 (832)
Q Consensus 639 P~~~g~~~~~~~~~----g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 714 (832)
|++.|+|+|+|.+. +.+++++++++|++||++|+++|||||+||+||+|+|.|+.+|.|+.+++.+|+++|+|+||
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aar~a~ 160 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTARRAC 160 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHHHHHH
Confidence 99999999999887 55688999999999999999999999999999999999999998888888899999999999
Q ss_pred HHHHHhcCCeeeeeeEEE
Q 003305 715 YASQLTAKPRLLEPVYMV 732 (832)
Q Consensus 715 ~~al~~a~~~LlEPi~~~ 732 (832)
++|+++|+|+||||||.|
T Consensus 161 ~~a~l~a~prLLEPim~v 178 (178)
T cd01683 161 YSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHCCCEEEcceEeC
Confidence 999999999999999975
No 28
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=2.4e-36 Score=320.31 Aligned_cols=255 Identities=31% Similarity=0.440 Sum_probs=202.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
||+++||+|||||||+++|++.+|.+.+. .....+++|+.++|++||+|++++..++.|. ++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----------------~~ 64 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK----------------DH 64 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC----------------CE
Confidence 79999999999999999999999987652 1112568999999999999999999999997 89
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHHH
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 178 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~ 178 (832)
+++|||||||.+|..++.++++.+|++|+|||+.+|++.+++.+|+.+...++|+++|+||+|+. +++.+...+.+
T Consensus 65 ~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~----~a~~~~~~~~l 140 (270)
T cd01886 65 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT----GADFFRVVEQI 140 (270)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 77755554444
Q ss_pred HHHHHHhhhhhhhccCCCCCCeeEeecccceecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003305 179 SRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (832)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (832)
++.+.. .+...++|++.. +.|. +|+..++.+.|.+. ..++
T Consensus 141 ~~~l~~------------------~~~~~~~Pisa~~~f~g~----------------vd~~~~~a~~~~~~----~~~~ 182 (270)
T cd01886 141 REKLGA------------------NPVPLQLPIGEEDDFRGV----------------VDLIEMKALYWDGE----LGEK 182 (270)
T ss_pred HHHhCC------------------CceEEEeccccCCCceEE----------------EEccccEEEecccC----CCce
Confidence 443321 122235566543 2222 66666666666221 1111
Q ss_pred eEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc-------
Q 003305 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA------- 328 (832)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------- 328 (832)
+... +.+..+.+.+-+-+.+|+|++++.|+++||+||++ .+++.+|+. ++|++++. ++++|+
T Consensus 183 ~~~~-----~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~PV~~gSa~~ 252 (270)
T cd01886 183 IEET-----EIPEDLLEEAEEAREELIETLAEFDDELMEKYLEG--EEITEEEIK---AAIRKGTIANKIVPVLCGSAFK 252 (270)
T ss_pred eEEe-----cCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHcCcEEEEEeCcCCC
Confidence 2222 22333444455566799999999999999999998 789999987 67888876 689997
Q ss_pred ---hHHHHHHHHhcCCCc
Q 003305 329 ---SSALLEMMIFHLPSP 343 (832)
Q Consensus 329 ---~~~LLd~i~~~lPsP 343 (832)
++.|||++++|+|+|
T Consensus 253 ~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 253 NKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcCHHHHHHHHHHhcCCC
Confidence 799999999999998
No 29
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=2.6e-33 Score=296.95 Aligned_cols=247 Identities=23% Similarity=0.292 Sum_probs=187.0
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc--C----CceEeecCcccccccCceeeeeeEEEEeeccchhhccccC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--A----GDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~----g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (832)
++|||+|+||+|+|||||+++|++.+|.+.+.- . ...+++|+.++|++||+|+..+...+.|.
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~----------- 69 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR----------- 69 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC-----------
Confidence 479999999999999999999999999887621 0 12357999999999999999999999996
Q ss_pred cCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCH
Q 003305 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~ 171 (832)
+++++|||||||.+|..++..+++.+|++|+|+|++.|+..+++.+|+++...++|+++|+||+|+. +++.
T Consensus 70 -----~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~----~a~~ 140 (267)
T cd04169 70 -----DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE----GRDP 140 (267)
T ss_pred -----CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC----CCCH
Confidence 8999999999999999999999999999999999999999999999999888899999999999998 7774
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003305 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (832)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (832)
.++.+.+++.+. . .+...++|++.+ +.|. +|+..++++.|.+
T Consensus 141 ~~~~~~l~~~l~---~---------------~~~~~~~Pi~~~~~~~g~----------------vd~~~~~a~~~~~-- 184 (267)
T cd04169 141 LELLDEIEEELG---I---------------DCTPLTWPIGMGKDFKGV----------------YDRRTGEVELYDR-- 184 (267)
T ss_pred HHHHHHHHHHHC---C---------------CceeEEecccCCCceEEE----------------EEhhhCEEEEecC--
Confidence 444433333221 1 122235666654 2332 5666555555521
Q ss_pred cCcCCC-ceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hcccc
Q 003305 250 FDPATK-KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLP 327 (832)
Q Consensus 250 ~~~~~~-~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P 327 (832)
+..+ .+...+ .+. .+.+.+++.|+++||+|+++ .+++.+++. ..+.+++. ++++|
T Consensus 185 --~~~~~~~~~~~-----~p~-----------~~~e~~~e~~~~l~e~~~e~--~~~~~~~~~---~~~~~~~~~~~~~P 241 (267)
T cd04169 185 --GAGGATIAPEE-----TKG-----------LDDPKLDELGGDLAEQLREE--LELLEGAGP---EFDQEAFLAGELTP 241 (267)
T ss_pred --CCCCccceecc-----CCc-----------ccHHHHHhcCHHHHHHHhCC--CccchhhhH---HHhHHHHHcCCEEE
Confidence 1011 011110 011 12377888899999999997 566666654 45566665 68999
Q ss_pred c----------hHHHHHHHHhcCCCc
Q 003305 328 A----------SSALLEMMIFHLPSP 343 (832)
Q Consensus 328 ~----------~~~LLd~i~~~lPsP 343 (832)
| ++.|||+|++|+|+|
T Consensus 242 v~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 242 VFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred EEecccccCcCHHHHHHHHHHHCCCC
Confidence 7 899999999999998
No 30
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=6.6e-33 Score=289.16 Aligned_cols=222 Identities=33% Similarity=0.452 Sum_probs=181.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCc----eEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~----~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
||+++||+|+|||||+++|++.+|.+.+ .|+ .+++|+.++|++||+|+..+...+.|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~--~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~---------------- 62 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRK--LGSVDKGTTRTDTMELERQRGITIFSAVASFQWE---------------- 62 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccc--cccccCCcccCCCchhHhhCCCceeeeeEEEEEC----------------
Confidence 7999999999999999999999998876 332 468899999999999999999999986
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHH
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (832)
++++++||||||.+|..++.++++.+|++++|+|+.+|++.+++.+|+++...++|.++|+||+|+. ++++++.++
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~----~a~~~~~~~ 138 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA----GADLEKVYQ 138 (237)
T ss_pred CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc----CCCHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999 887655544
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003305 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (832)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (832)
.+++.+ ... +...++| +|... ++.
T Consensus 139 ~i~~~~---~~~---------------~~~~~~p------~~~~~---------------------------~~~----- 162 (237)
T cd04168 139 EIKEKL---SSD---------------IVPMQKV------GLAPN---------------------------ICE----- 162 (237)
T ss_pred HHHHHH---CCC---------------eEEEECC------cEeee---------------------------eee-----
Confidence 444322 211 1111222 12110 000
Q ss_pred eEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc-------
Q 003305 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA------- 328 (832)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------- 328 (832)
.. +.+ .+|+|++++.|+++||+||++ .+++.+|+. ++|++++. ++++||
T Consensus 163 ~~-------~~~-----------~~l~e~vae~dd~l~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~Pv~~gsa~~ 219 (237)
T cd04168 163 TN-------EID-----------DEFWETLAEGDDELLEKYLEG--GPIEELELD---NELSARIAKRKVFPVYHGSALK 219 (237)
T ss_pred ee-------ecc-----------HHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCeEEEEEccccC
Confidence 00 001 378999999999999999997 789999987 67888776 689997
Q ss_pred ---hHHHHHHHHhcCCCc
Q 003305 329 ---SSALLEMMIFHLPSP 343 (832)
Q Consensus 329 ---~~~LLd~i~~~lPsP 343 (832)
+++|||++++|+|||
T Consensus 220 ~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 220 GIGIEELLEGITKLFPTS 237 (237)
T ss_pred CcCHHHHHHHHHHhcCCC
Confidence 899999999999998
No 31
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=2.1e-32 Score=308.25 Aligned_cols=301 Identities=23% Similarity=0.365 Sum_probs=218.7
Q ss_pred HhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccc
Q 003305 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY 89 (832)
Q Consensus 10 ~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (832)
++.+...+..+||+++||+|||||||+++|++..+.+..........+|..++|++||+|+++....+.++
T Consensus 3 ~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--------- 73 (409)
T CHL00071 3 REKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE--------- 73 (409)
T ss_pred hhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC---------
Confidence 34556677789999999999999999999999988775432323457899999999999999987776554
Q ss_pred cCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCccccccc
Q 003305 90 KGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQ 168 (832)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~~~~~~ 168 (832)
+.+++|+|||||.+|..++.++++.+|+|++|||+.+|+..||++++..+...++| +|+++||||+. .
T Consensus 74 -------~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~----~ 142 (409)
T CHL00071 74 -------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV----D 142 (409)
T ss_pred -------CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC----C
Confidence 67899999999999999999999999999999999999999999999999999999 56799999987 4
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCc
Q 003305 169 VDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 248 (832)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~ 248 (832)
. ++.++ .+.+++...+..+..+ +....+.+.|+.+||.....
T Consensus 143 ~--~~~~~---~~~~~l~~~l~~~~~~--------~~~~~ii~~Sa~~g~n~~~~------------------------- 184 (409)
T CHL00071 143 D--EELLE---LVELEVRELLSKYDFP--------GDDIPIVSGSALLALEALTE------------------------- 184 (409)
T ss_pred H--HHHHH---HHHHHHHHHHHHhCCC--------CCcceEEEcchhhccccccc-------------------------
Confidence 2 23222 2333444444432111 11124556777777643100
Q ss_pred ccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccc
Q 003305 249 FFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA 328 (832)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~ 328 (832)
.. .+.. . ...|...
T Consensus 185 ----~~-~~~~-----------------------------~--------------------------------~~~w~~~ 198 (409)
T CHL00071 185 ----NP-KIKR-----------------------------G--------------------------------ENKWVDK 198 (409)
T ss_pred ----Cc-cccc-----------------------------c--------------------------------CCchhhh
Confidence 00 0000 0 0012222
Q ss_pred hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCE
Q 003305 329 SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLK 408 (832)
Q Consensus 329 ~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~ 408 (832)
...||+++.+++|+|.. +.++||.++|++++..++.|. ++++||++|+++.||.
T Consensus 199 ~~~ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~v~~~~g~G~-Vv~G~V~sG~l~~Gd~ 252 (409)
T CHL00071 199 IYNLMDAVDSYIPTPER-------------------------DTDKPFLMAIEDVFSITGRGT-VATGRIERGTVKVGDT 252 (409)
T ss_pred HHHHHHHHHhhCCCCCC-------------------------CCCCCEEEEEEEEEEeCCCeE-EEEEEEecCEEeeCCE
Confidence 25688888888888721 235799999999999888887 8999999999999999
Q ss_pred EEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eeecCC
Q 003305 409 VRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 471 (832)
Q Consensus 409 v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~--gl~~~~~~tg-Tl~~~~ 471 (832)
|.++++. .+. ..+|..|... ..++++|.|||+|++. |++....+.| +|++.+
T Consensus 253 v~i~p~~--~~~-----~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 253 VEIVGLR--ETK-----TTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred EEEeeCC--CCc-----EEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 9876432 111 2688888753 2478999999999664 6654334567 777653
No 32
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=100.00 E-value=1.5e-32 Score=273.47 Aligned_cols=173 Identities=65% Similarity=1.101 Sum_probs=158.2
Q ss_pred CcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEec
Q 003305 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (832)
Q Consensus 559 ~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (832)
+|.|+|||||.+.+...+..+++++|++++++++||++++.+.|++|....+...+.+.+.+...++|+..++++||+||
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 69999999999988777788999999999999999999999999998876555555556677789999999999999999
Q ss_pred cCCCCCceEEeccccccc----hHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHH
Q 003305 639 PETTGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 714 (832)
Q Consensus 639 P~~~g~~~~~~~~~g~~~----~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 714 (832)
|.+.|+|+|+|.+.+.++ +++++++|++||++|+++|||||+||+||+|+|.|+.+|.+..+...+|+++|+|+||
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~ 160 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRAC 160 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHH
Confidence 999999999999888777 8999999999999999999999999999999999999998766777889999999999
Q ss_pred HHHHHhcCCeeeeeeEE
Q 003305 715 YASQLTAKPRLLEPVYM 731 (832)
Q Consensus 715 ~~al~~a~~~LlEPi~~ 731 (832)
++||++|+|+||||||.
T Consensus 161 ~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 161 YAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHhhCCCEEEccccC
Confidence 99999999999999994
No 33
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-31 Score=281.53 Aligned_cols=285 Identities=28% Similarity=0.411 Sum_probs=209.0
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCcccccccCceeeeeeEEEEee
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
.+...|++++||+|||||||+.+|+|..|.++.+ ..|+ .+++|+.++||+||+|++.+...|..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3456799999999999999999999999998763 2343 579999999999999999999988775
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-------cchhHHHHHHHHHcCCCC-
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR- 152 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~~p- 152 (832)
.+.++|+|||||.||..+++.++.+||+|||||||..| +..||++++-.+...++.
T Consensus 84 ----------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~ 147 (428)
T COG5256 84 ----------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQ 147 (428)
T ss_pred ----------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCce
Confidence 77899999999999999999999999999999999998 999999999999999986
Q ss_pred eEEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhc
Q 003305 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASK 232 (832)
Q Consensus 153 ~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~ 232 (832)
.|+++||||.. .|| .++++++..+++.++..+..++. ++.|.| .||+.|-..+-
T Consensus 148 lIVavNKMD~v----~wd----e~rf~ei~~~v~~l~k~~G~~~~-~v~FIP-------iSg~~G~Nl~~---------- 201 (428)
T COG5256 148 LIVAVNKMDLV----SWD----EERFEEIVSEVSKLLKMVGYNPK-DVPFIP-------ISGFKGDNLTK---------- 201 (428)
T ss_pred EEEEEEccccc----ccC----HHHHHHHHHHHHHHHHHcCCCcc-CCeEEe-------cccccCCcccc----------
Confidence 56799999999 887 45677777777776655443321 233444 34454422110
Q ss_pred cCCChHHHHHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhh
Q 003305 233 FGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDL 312 (832)
Q Consensus 233 ~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~ 312 (832)
..+ ..-| |++
T Consensus 202 ----~s~--~~pW----Y~G------------------------------------------------------------ 211 (428)
T COG5256 202 ----KSE--NMPW----YKG------------------------------------------------------------ 211 (428)
T ss_pred ----cCc--CCcC----ccC------------------------------------------------------------
Confidence 000 1112 211
Q ss_pred hhHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcc
Q 003305 313 MGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRF 392 (832)
Q Consensus 313 ~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~ 392 (832)
..||+++. .+..|.. .-+.||..-|-.++.-...|.
T Consensus 212 -----------------pTLleaLd-~~~~p~~-------------------------~~d~Plr~pI~~v~~i~~~gt- 247 (428)
T COG5256 212 -----------------PTLLEALD-QLEPPER-------------------------PLDKPLRLPIQDVYSISGIGT- 247 (428)
T ss_pred -----------------ChHHHHHh-ccCCCCC-------------------------CCCCCeEeEeeeEEEecCCce-
Confidence 11222222 3333310 035799999999887666777
Q ss_pred eeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccceeeec
Q 003305 393 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNATLTN 469 (832)
Q Consensus 393 l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i--~gl~~~~~~tgTl~~ 469 (832)
+..+||-||.|++||.|++...+ . .-.|+.+.. +.++++.+.+||.+.+ .|++..-.+.|.++.
T Consensus 248 v~vGrVEsG~i~~g~~v~~~p~~-----~----~~evksie~----~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~ 313 (428)
T COG5256 248 VPVGRVESGVIKPGQKVTFMPAG-----V----VGEVKSIEM----HHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIG 313 (428)
T ss_pred EEEEEEeeeeeccCCEEEEecCc-----c----eEEEeeeee----cccccccCCCCCeEEEEecCCchhccCCccEec
Confidence 88899999999999999986422 1 135666653 3788999999999876 465543346674443
No 34
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.8e-31 Score=297.70 Aligned_cols=286 Identities=25% Similarity=0.353 Sum_probs=204.4
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
..+..+||+++||+|||||||+++|+...+...+........+|..++|++||+|++.+...+.+.
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~-------------- 73 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE-------------- 73 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC--------------
Confidence 456679999999999999999999987543221111111236899999999999999876665443
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcccccccCCHHH
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEE 173 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~~~~~~~~~~~ 173 (832)
++.++|||||||.+|..++.++++.+|++++|||+.+|+..||++++.++...++| +|+++||||+. .. ++
T Consensus 74 --~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~----~~--~~ 145 (394)
T PRK12736 74 --KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV----DD--EE 145 (394)
T ss_pred --CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc----ch--HH
Confidence 67899999999999999999999999999999999999999999999999999999 46799999976 32 22
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcC
Q 003305 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (832)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (832)
.++ .+.+++...+..+.. .+...++...|+.+|+.
T Consensus 146 ~~~---~i~~~i~~~l~~~~~--------~~~~~~ii~vSa~~g~~---------------------------------- 180 (394)
T PRK12736 146 LLE---LVEMEVRELLSEYDF--------PGDDIPVIRGSALKALE---------------------------------- 180 (394)
T ss_pred HHH---HHHHHHHHHHHHhCC--------CcCCccEEEeecccccc----------------------------------
Confidence 222 222344444432211 01111233334432210
Q ss_pred CCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHH
Q 003305 254 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALL 333 (832)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 333 (832)
+. ..|.+....|+
T Consensus 181 ---------~~----------------------------------------------------------~~~~~~i~~Ll 193 (394)
T PRK12736 181 ---------GD----------------------------------------------------------PKWEDAIMELM 193 (394)
T ss_pred ---------CC----------------------------------------------------------CcchhhHHHHH
Confidence 00 01122235678
Q ss_pred HHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcC
Q 003305 334 EMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 413 (832)
Q Consensus 334 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~ 413 (832)
+++.+++|.|. .+.++||.++|+.++..+..|. ++.+||++|+|+.||.|++++
T Consensus 194 ~~l~~~lp~~~-------------------------~~~~~p~r~~I~~~~~~~g~G~-Vv~G~v~~G~l~~gd~v~i~p 247 (394)
T PRK12736 194 DAVDEYIPTPE-------------------------RDTDKPFLMPVEDVFTITGRGT-VVTGRVERGTVKVGDEVEIVG 247 (394)
T ss_pred HHHHHhCCCCC-------------------------CCCCCCeEEEEEEEEecCCcEE-EEEEEEeecEEecCCEEEEec
Confidence 88888898772 1235799999999999888887 899999999999999999875
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003305 414 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (832)
Q Consensus 414 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i--~gl~~~~~~tg-Tl~~~~ 471 (832)
.+. + ...+|.+|.. ...++++|.|||++++ .|++....+.| +||+.+
T Consensus 248 ~~~--~-----~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 248 IKE--T-----QKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred CCC--C-----eEEEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 321 1 1268888875 3567899999999966 67654333566 777654
No 35
>PLN03126 Elongation factor Tu; Provisional
Probab=99.97 E-value=3.2e-30 Score=292.61 Aligned_cols=304 Identities=24% Similarity=0.346 Sum_probs=215.9
Q ss_pred HHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhh
Q 003305 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDAL 86 (832)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~ 86 (832)
..+.+.++..+..+||+++||+|||||||+++|++..+.+..........+|..++|++||+|++.....+.++
T Consensus 69 ~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~------ 142 (478)
T PLN03126 69 RAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE------ 142 (478)
T ss_pred HHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC------
Confidence 34445555567789999999999999999999999988776543333467999999999999999988877665
Q ss_pred ccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcccc
Q 003305 87 KSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFL 165 (832)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~~~ 165 (832)
++.++|||||||.+|..++.++++.+|+|++||||.+|+.+||+++|..+...++| +|+++||||+.
T Consensus 143 ----------~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~-- 210 (478)
T PLN03126 143 ----------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV-- 210 (478)
T ss_pred ----------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc--
Confidence 77999999999999999999999999999999999999999999999999999999 56799999986
Q ss_pred cccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhh
Q 003305 166 ELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 245 (832)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w 245 (832)
. .++.+ +.+.++++.++..+..+ +....+...|+++||.....
T Consensus 211 --~--~~~~~---~~i~~~i~~~l~~~g~~--------~~~~~~vp~Sa~~g~n~~~~---------------------- 253 (478)
T PLN03126 211 --D--DEELL---ELVELEVRELLSSYEFP--------GDDIPIISGSALLALEALME---------------------- 253 (478)
T ss_pred --C--HHHHH---HHHHHHHHHHHHhcCCC--------cCcceEEEEEcccccccccc----------------------
Confidence 4 23333 33334555555432111 11113344566666532100
Q ss_pred cCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhcc
Q 003305 246 GENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTW 325 (832)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 325 (832)
+.. ... +. . -| |
T Consensus 254 -~~~-------~~~---g~----~---------~w--y------------------------------------------ 265 (478)
T PLN03126 254 -NPN-------IKR---GD----N---------KW--V------------------------------------------ 265 (478)
T ss_pred -ccc-------ccc---CC----C---------ch--h------------------------------------------
Confidence 000 000 00 0 01 0
Q ss_pred ccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeC
Q 003305 326 LPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVST 405 (832)
Q Consensus 326 ~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~ 405 (832)
.....||+++.++.|.|.. +.+.||.++|..++..++.|. +..+||.+|+|+.
T Consensus 266 -~~i~~Ll~~l~~~~~~p~r-------------------------~~~~p~r~~I~~vf~v~g~Gt-Vv~G~V~sG~i~~ 318 (478)
T PLN03126 266 -DKIYELMDAVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERGTVKV 318 (478)
T ss_pred -hhHHHHHHHHHHhCCCCCC-------------------------ccccceeeEEEEEEEeCCceE-EEEEEEEcCeEec
Confidence 0013467777777766621 135789999999988888886 8999999999999
Q ss_pred CCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003305 406 GLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (832)
Q Consensus 406 g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i--~gl~~~~~~tg-Tl~~~~ 471 (832)
||.|+++..+ . ....+|..|... ..++++|.|||.+++ .|++....+.| .|++..
T Consensus 319 Gd~v~i~p~~----~---~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 319 GETVDIVGLR----E---TRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred CCEEEEecCC----C---ceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 9999986311 1 112578888743 478999999999888 46554333456 677643
No 36
>PRK12735 elongation factor Tu; Reviewed
Probab=99.97 E-value=3.2e-30 Score=289.43 Aligned_cols=292 Identities=21% Similarity=0.312 Sum_probs=208.4
Q ss_pred hhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhcccc
Q 003305 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (832)
Q Consensus 11 ~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (832)
+.....+...||+++||+|||||||+++|++..+...+......+.+|..++|++||+|++.+...+.++
T Consensus 4 ~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~---------- 73 (396)
T PRK12735 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA---------- 73 (396)
T ss_pred hhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------
Confidence 4455667789999999999999999999998544222111111247899999999999999877665553
Q ss_pred CcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcccccccC
Q 003305 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQV 169 (832)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~~~~~~~ 169 (832)
+.+++|||||||.+|..++.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+. .
T Consensus 74 ------~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~----~- 142 (396)
T PRK12735 74 ------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D- 142 (396)
T ss_pred ------CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc----c-
Confidence 6789999999999999999999999999999999999999999999999999999977 589999986 3
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003305 170 DGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (832)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (832)
.++.+ +.+.+++...+..+.. .+...++.+.|+..||... . ..
T Consensus 143 -~~~~~---~~~~~ei~~~l~~~~~--------~~~~~~ii~~Sa~~g~n~~-----------------~--~~------ 185 (396)
T PRK12735 143 -DEELL---ELVEMEVRELLSKYDF--------PGDDTPIIRGSALKALEGD-----------------D--DE------ 185 (396)
T ss_pred -hHHHH---HHHHHHHHHHHHHcCC--------CcCceeEEecchhccccCC-----------------C--CC------
Confidence 12222 2233344444432211 1111233445555554210 0 00
Q ss_pred cCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccch
Q 003305 250 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPAS 329 (832)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~ 329 (832)
.|.+..
T Consensus 186 --------------------------------------------------------------------------~w~~~~ 191 (396)
T PRK12735 186 --------------------------------------------------------------------------EWEAKI 191 (396)
T ss_pred --------------------------------------------------------------------------cccccH
Confidence 011112
Q ss_pred HHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEE
Q 003305 330 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKV 409 (832)
Q Consensus 330 ~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v 409 (832)
..||+++.+++|.|.. +.++||.++|..++..+..|. ++.+||.+|+|+.||.|
T Consensus 192 ~~Ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~Gt-vv~G~v~~G~i~~gd~v 245 (396)
T PRK12735 192 LELMDAVDSYIPEPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIVKVGDEV 245 (396)
T ss_pred HHHHHHHHhcCCCCCc-------------------------cCCCCeEEEEEEEEecCCceE-EEEEEEEecEEeCCCEE
Confidence 4578888888887721 235799999999998888886 89999999999999999
Q ss_pred EEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003305 410 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (832)
Q Consensus 410 ~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i--~gl~~~~~~tg-Tl~~~~ 471 (832)
++++.+ .. ...+|..|.. ...++++|.|||.+++ .|++....+.| +||+.+
T Consensus 246 ~i~p~~--~~-----~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 246 EIVGIK--ET-----QKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred EEecCC--CC-----eEEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 987422 01 1257888774 3478999999999988 56654333556 777654
No 37
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.97 E-value=4.7e-30 Score=288.30 Aligned_cols=288 Identities=22% Similarity=0.335 Sum_probs=201.8
Q ss_pred hcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCc
Q 003305 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (832)
Q Consensus 13 ~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (832)
..+.++.+||+++||+|||||||+++|++......+......+.+|..++|++||+|++.+...+.+.
T Consensus 6 ~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~------------ 73 (394)
T TIGR00485 6 FERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE------------ 73 (394)
T ss_pred hcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC------------
Confidence 34556789999999999999999999986533211111111347999999999999999877665443
Q ss_pred CCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcccccccCCH
Q 003305 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDG 171 (832)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~~~~~~~~~ 171 (832)
+.+++|||||||.+|..++.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+. ..
T Consensus 74 ----~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~----~~-- 143 (394)
T TIGR00485 74 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV----DD-- 143 (394)
T ss_pred ----CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC----CH--
Confidence 6789999999999999999999999999999999999999999999999999999977 589999986 32
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccC
Q 003305 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (832)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (832)
++.+ +.+.+++...+..+... +...++.+.|+..|+.
T Consensus 144 ~~~~---~~~~~~i~~~l~~~~~~--------~~~~~ii~vSa~~g~~-------------------------------- 180 (394)
T TIGR00485 144 EELL---ELVEMEVRELLSEYDFP--------GDDTPIIRGSALKALE-------------------------------- 180 (394)
T ss_pred HHHH---HHHHHHHHHHHHhcCCC--------ccCccEEECccccccc--------------------------------
Confidence 2222 22333444444322110 1011223334322210
Q ss_pred cCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHH
Q 003305 252 PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSA 331 (832)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 331 (832)
+. . -| ++ ....
T Consensus 181 -----------g~---~----------~~--~~-------------------------------------------~~~~ 191 (394)
T TIGR00485 181 -----------GD---A----------EW--EA-------------------------------------------KILE 191 (394)
T ss_pred -----------cC---C----------ch--hH-------------------------------------------hHHH
Confidence 00 0 00 00 0134
Q ss_pred HHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEE
Q 003305 332 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI 411 (832)
Q Consensus 332 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v 411 (832)
||+++.+++|.|. .+.++||.++|+.++..+..|. ++.+||.+|+|+.||.|++
T Consensus 192 ll~~l~~~~~~~~-------------------------~~~~~p~r~~V~~vf~~~g~G~-Vv~G~v~~G~l~~gd~v~i 245 (394)
T TIGR00485 192 LMDAVDEYIPTPE-------------------------RETDKPFLMPIEDVFSITGRGT-VVTGRVERGIVKVGEEVEI 245 (394)
T ss_pred HHHHHHhcCCCCC-------------------------CCCCCCeEEEEEEEEeeCCceE-EEEEEEEeeEEeCCCEEEE
Confidence 6777777888772 1235789999999998888887 9999999999999999997
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003305 412 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (832)
Q Consensus 412 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i--~gl~~~~~~tg-Tl~~~~ 471 (832)
.+.. .+. ..+|..|.. ...++++|.|||.|++ .|++..-.+.| +|++..
T Consensus 246 ~p~~--~~~-----~~~VksI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 246 VGLK--DTR-----KTTVTGVEM----FRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred ecCC--CCc-----EEEEEEEEE----CCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 6421 111 267888875 2467899999999977 56643323556 777653
No 38
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.97 E-value=1.2e-30 Score=278.79 Aligned_cols=252 Identities=26% Similarity=0.366 Sum_probs=192.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccc---cCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
||+++||+|+|||||+++|++..|.+.+. ..| .+++|+.++|++|++|+......+.|. +
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g-~~~~d~~~~e~~r~~ti~~~~~~~~~~----------------~ 63 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG-TTVSDYDPEEIKRKMSISTSVAPLEWK----------------G 63 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC-cccCCCCHHHHhhcccccceeEEEEEC----------------C
Confidence 79999999999999999999998877552 122 467899999999999999998888886 7
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHH
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (832)
+.+++||||||.+|..++..+++.+|++++|+|++.|...++..+|+++...++|.++|+||+|+. +.+.++..+.
T Consensus 64 ~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~----~~~~~~~~~~ 139 (268)
T cd04170 64 HKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE----RADFDKTLAA 139 (268)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC----CCCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999998 7765544444
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeEeecccceecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCC
Q 003305 178 FSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (832)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~ 255 (832)
+++.+. . .+...++|...+ +.|+ +|......+.|.+ ..
T Consensus 140 l~~~~~---~---------------~~~~~~ip~~~~~~~~~~----------------vd~~~~~~~~~~~-----~~- 179 (268)
T cd04170 140 LQEAFG---R---------------PVVPLQLPIGEGDDFKGV----------------VDLLTEKAYIYSP-----GA- 179 (268)
T ss_pred HHHHhC---C---------------CeEEEEecccCCCceeEE----------------EEcccCEEEEccC-----CC-
Confidence 333221 1 011224444432 3333 3333333334421 11
Q ss_pred ceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc------
Q 003305 256 KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA------ 328 (832)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------ 328 (832)
..... +.+......+.+.+.+|+|.+++.|+++||+||++ .+++++|+. +.|++++. +.++|+
T Consensus 180 ~~~~~-----~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~--~~~~~~~l~---~~l~~~~~~~~~~pv~~gSa~ 249 (268)
T cd04170 180 PSEEI-----EIPEELKEEVAEAREELLEAVAETDDELMEKYLEG--GELTEEELH---AGLRRALRAGLLVPVLCGSAL 249 (268)
T ss_pred cceec-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEEeeCC
Confidence 01111 22333444444556789999999999999999997 789999987 67777776 688886
Q ss_pred ----hHHHHHHHHhcCCCc
Q 003305 329 ----SSALLEMMIFHLPSP 343 (832)
Q Consensus 329 ----~~~LLd~i~~~lPsP 343 (832)
++.|||++.+|+|+|
T Consensus 250 ~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 250 TNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCcCHHHHHHHHHHhCCCC
Confidence 899999999999998
No 39
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.97 E-value=1.7e-29 Score=298.96 Aligned_cols=314 Identities=19% Similarity=0.286 Sum_probs=223.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+|+||+|||||||+++|.... +. ....+|+|+......+.|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--v~--------------~~e~~GIT~~iga~~v~~~---------------- 335 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--VA--------------AGEAGGITQHIGAYQVETN---------------- 335 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--cc--------------ccccCceeeeccEEEEEEC----------------
Confidence 456799999999999999999994321 11 1123688888887777775
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHH
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (832)
++.++|||||||.+|...+.++++.+|++|||||+++|+.+||.++|.++...++|+|+|+||||+. +++++.+..
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~----~a~~e~V~~ 411 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKP----GANPDRVKQ 411 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccc----ccCHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999998 776544433
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003305 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (832)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (832)
.+.+ .+.....+. +.+ ++...|+..|.+.
T Consensus 412 eL~~----~~~~~e~~g----~~v-------p~vpvSAktG~GI------------------------------------ 440 (787)
T PRK05306 412 ELSE----YGLVPEEWG----GDT-------IFVPVSAKTGEGI------------------------------------ 440 (787)
T ss_pred HHHH----hcccHHHhC----CCc-------eEEEEeCCCCCCc------------------------------------
Confidence 3322 111111000 000 1122233222210
Q ss_pred eEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHHHH
Q 003305 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (832)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (832)
..|++.+
T Consensus 441 -------------------------------------------------------------------------~eLle~I 447 (787)
T PRK05306 441 -------------------------------------------------------------------------DELLEAI 447 (787)
T ss_pred -------------------------------------------------------------------------hHHHHhh
Confidence 0011111
Q ss_pred HhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCC
Q 003305 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (832)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~ 416 (832)
... + +... ..+++++|+.++||++..+++.|. ++++||++|+|+.||.|++.
T Consensus 448 ~~~--~--e~~~-------------------l~~~~~~~~~g~V~es~~dkg~G~-v~~v~V~sGtLk~Gd~vv~g---- 499 (787)
T PRK05306 448 LLQ--A--EVLE-------------------LKANPDRPARGTVIEAKLDKGRGP-VATVLVQNGTLKVGDIVVAG---- 499 (787)
T ss_pred hhh--h--hhhh-------------------cccCCCCCcEEEEEEEEEcCCCeE-EEEEEEecCeEecCCEEEEC----
Confidence 100 0 0000 013456889999999999999998 99999999999999999851
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCC----------------------
Q 003305 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEV---------------------- 473 (832)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~---------------------- 473 (832)
.+.++++.+.+.+..++++|.|||+|+|.||+++ ..+| ||+.....
T Consensus 500 ----------~~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~-p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~ 568 (787)
T PRK05306 500 ----------TTYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGV-PQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQ 568 (787)
T ss_pred ----------CcEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2567888888888889999999999999999875 2456 77732210
Q ss_pred CcccccccccC----CCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChhh
Q 003305 474 DAHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELH 537 (832)
Q Consensus 474 ~~~~~~~~~~~----~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~GelH 537 (832)
....+..+..+ -.+.+.+.|.+......+.|..+|.+|..+++.+.+ +-+|.|.+.
T Consensus 569 ~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i--------~~~~vG~it 628 (787)
T PRK05306 569 QRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI--------IHSGVGAIT 628 (787)
T ss_pred cccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE--------EeeccCCCC
Confidence 01122222111 123699999999999999999999999999998877 345666664
No 40
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.97 E-value=5.2e-30 Score=290.04 Aligned_cols=289 Identities=24% Similarity=0.332 Sum_probs=205.3
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-----eEeecCcccccccCceeeeeeEEEEe
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYY 79 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~ 79 (832)
..+..+||+++||+|||||||+++|++.+|.+.+.. .|. .+++|..++|++||+|++.+...+.+
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 345678999999999999999999999999876531 111 35799999999999999998887777
Q ss_pred eccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-------chhHHHHHHHHHcCCCC
Q 003305 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR 152 (832)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-------~~qt~~~~~~~~~~~~p 152 (832)
. ++.++|||||||.||..++..+++.+|+||||||+++|. ..||+++|..+...++|
T Consensus 83 ~----------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 83 T----------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred C----------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCC
Confidence 5 889999999999999999999999999999999999983 27999999999999997
Q ss_pred e-EEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhh
Q 003305 153 P-VLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (832)
Q Consensus 153 ~-ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (832)
. |+++||||+. ..+ ....++.+++++++.++..++.+ +....+...|++.|....
T Consensus 147 ~iIV~vNKmD~~----~~~--~~~~~~~~i~~ei~~~l~~~g~~--------~~~~~~ipiSa~~G~ni~---------- 202 (447)
T PLN00043 147 QMICCCNKMDAT----TPK--YSKARYDEIVKEVSSYLKKVGYN--------PDKIPFVPISGFEGDNMI---------- 202 (447)
T ss_pred cEEEEEEcccCC----chh--hhHHHHHHHHHHHHHHHHHcCCC--------cccceEEEEecccccccc----------
Confidence 5 6799999976 222 22356777777777776543211 111123334555554220
Q ss_pred ccCCChHHHHHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHh
Q 003305 232 KFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKD 311 (832)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 311 (832)
+... ..-| |+
T Consensus 203 ----~~~~--~~~W----y~------------------------------------------------------------ 212 (447)
T PLN00043 203 ----ERST--NLDW----YK------------------------------------------------------------ 212 (447)
T ss_pred ----cccc--CCcc----cc------------------------------------------------------------
Confidence 0000 0011 00
Q ss_pred hhhHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCc
Q 003305 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 391 (832)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~ 391 (832)
-..||+++.+ +|.|. .+.+.||.+.|..++..+..|.
T Consensus 213 -----------------g~tLl~~l~~-i~~p~-------------------------~~~~~plr~~I~~v~~~~g~G~ 249 (447)
T PLN00043 213 -----------------GPTLLEALDQ-INEPK-------------------------RPSDKPLRLPLQDVYKIGGIGT 249 (447)
T ss_pred -----------------hHHHHHHHhh-cCCCc-------------------------cccCCCcEEEEEEEEEeCCcEE
Confidence 0124444433 34441 0135789999999888777776
Q ss_pred ceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eee
Q 003305 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLT 468 (832)
Q Consensus 392 ~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~--gl~~~~~~tg-Tl~ 468 (832)
+..+||.+|+|+.||.|.++. . +. ..+|..|.. ...++++|.|||.+++. +++....+.| .|+
T Consensus 250 -vv~G~V~~G~l~~Gd~v~~~P-~---~~-----~~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~ 315 (447)
T PLN00043 250 -VPVGRVETGVIKPGMVVTFGP-T---GL-----TTEVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYVAS 315 (447)
T ss_pred -EEEEEEECCEEeeCCEEEEcC-C---CC-----EEEEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccEEc
Confidence 899999999999999999752 1 11 268888874 35789999999998874 4432223456 666
Q ss_pred cC
Q 003305 469 NE 470 (832)
Q Consensus 469 ~~ 470 (832)
+.
T Consensus 316 ~~ 317 (447)
T PLN00043 316 NS 317 (447)
T ss_pred cC
Confidence 54
No 41
>PRK00049 elongation factor Tu; Reviewed
Probab=99.97 E-value=2.1e-29 Score=282.62 Aligned_cols=291 Identities=21% Similarity=0.331 Sum_probs=205.0
Q ss_pred hhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccC
Q 003305 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (832)
Q Consensus 12 ~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (832)
...+.+..+||+++||+|||||||+++|++...............+|..++|++||+|++.+...+.+.
T Consensus 5 ~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------- 73 (396)
T PRK00049 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------- 73 (396)
T ss_pred hccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-----------
Confidence 445567789999999999999999999998542211111111236899999999999999887665543
Q ss_pred cCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcccccccCC
Q 003305 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVD 170 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~~~~~~~~ 170 (832)
+.+++|+|||||.+|..++.+++..+|++++|||+.+|+..||++++.++...++|.+ +++||||+. .
T Consensus 74 -----~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~----~-- 142 (396)
T PRK00049 74 -----KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D-- 142 (396)
T ss_pred -----CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc----c--
Confidence 6789999999999999999999999999999999999999999999999999999986 589999986 4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCccc
Q 003305 171 GEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 250 (832)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~ 250 (832)
.++. ++.+.++++..+..+.. .+...++...|+.+||...
T Consensus 143 ~~~~---~~~~~~~i~~~l~~~~~--------~~~~~~iv~iSa~~g~~~~----------------------------- 182 (396)
T PRK00049 143 DEEL---LELVEMEVRELLSKYDF--------PGDDTPIIRGSALKALEGD----------------------------- 182 (396)
T ss_pred hHHH---HHHHHHHHHHHHHhcCC--------CccCCcEEEeecccccCCC-----------------------------
Confidence 2222 22333344444432211 1111133344554443100
Q ss_pred CcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchH
Q 003305 251 DPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASS 330 (832)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~ 330 (832)
.. ..|.....
T Consensus 183 --~~--------------------------------------------------------------------~~w~~~~~ 192 (396)
T PRK00049 183 --DD--------------------------------------------------------------------EEWEKKIL 192 (396)
T ss_pred --Cc--------------------------------------------------------------------ccccccHH
Confidence 00 00111124
Q ss_pred HHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEE
Q 003305 331 ALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVR 410 (832)
Q Consensus 331 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~ 410 (832)
.||+++.+++|.|.. +.++||.+.|..++..+..|. +..+||.+|++++||.|+
T Consensus 193 ~ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~G~-Vv~G~v~~G~i~~gd~v~ 246 (396)
T PRK00049 193 ELMDAVDSYIPTPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIIKVGEEVE 246 (396)
T ss_pred HHHHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEeeeEEecCCEEE
Confidence 578888888887721 135789999998888788886 899999999999999999
Q ss_pred EcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003305 411 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (832)
Q Consensus 411 v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i--~gl~~~~~~tg-Tl~~~~ 471 (832)
+++.. .+. ..+|..|... ..++++|.|||.+++ .|++......| +||+.+
T Consensus 247 i~p~~--~~~-----~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 247 IVGIR--DTQ-----KTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred EeecC--CCc-----eEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 87532 111 2578888743 468999999999888 56543223456 777653
No 42
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.97 E-value=9.1e-30 Score=288.33 Aligned_cols=289 Identities=24% Similarity=0.333 Sum_probs=203.1
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CC--c---eEeecCcccccccCceeeeeeEEEEe
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG--D---VRMTDTRADEAERGITIKSTGISLYY 79 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g--~---~~~~d~~~~E~~rgiTi~~~~~~~~~ 79 (832)
..+...||+++||+|||||||+++|++..|.+.+.. .| . .+++|..++|++||+|++.+...+.|
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 345678999999999999999999999999877521 12 1 24799999999999999998888777
Q ss_pred eccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-------chhHHHHHHHHHcCCCC
Q 003305 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR 152 (832)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-------~~qt~~~~~~~~~~~~p 152 (832)
. ++.++|||||||.+|..++..+++.+|+||||||+.+|+ ..||+++|.++...++|
T Consensus 83 ~----------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~ 146 (446)
T PTZ00141 83 P----------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK 146 (446)
T ss_pred C----------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC
Confidence 5 889999999999999999999999999999999999997 58999999999999998
Q ss_pred e-EEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhh
Q 003305 153 P-VLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (832)
Q Consensus 153 ~-ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (832)
. |+++||||+. ..++. .+++.++.+++...+..... .+...++...|+..|.+..
T Consensus 147 ~iiv~vNKmD~~----~~~~~--~~~~~~i~~~i~~~l~~~g~--------~~~~~~~ipiSa~~g~ni~---------- 202 (446)
T PTZ00141 147 QMIVCINKMDDK----TVNYS--QERYDEIKKEVSAYLKKVGY--------NPEKVPFIPISGWQGDNMI---------- 202 (446)
T ss_pred eEEEEEEccccc----cchhh--HHHHHHHHHHHHHHHHhcCC--------CcccceEEEeecccCCCcc----------
Confidence 6 5799999965 32211 23466666666666543211 1111223334554443210
Q ss_pred ccCCChHHHHHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHh
Q 003305 232 KFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKD 311 (832)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 311 (832)
+... ...| |++
T Consensus 203 ----~~~~--~~~W----y~G----------------------------------------------------------- 213 (446)
T PTZ00141 203 ----EKSD--NMPW----YKG----------------------------------------------------------- 213 (446)
T ss_pred ----cCCC--CCcc----cch-----------------------------------------------------------
Confidence 0000 0011 100
Q ss_pred hhhHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCc
Q 003305 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 391 (832)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~ 391 (832)
..|++++.++ +.|. .+.+.|+.+.|..++..+..|.
T Consensus 214 ------------------~tL~~~l~~~-~~~~-------------------------~~~~~p~r~~I~~v~~v~g~Gt 249 (446)
T PTZ00141 214 ------------------PTLLEALDTL-EPPK-------------------------RPVDKPLRLPLQDVYKIGGIGT 249 (446)
T ss_pred ------------------HHHHHHHhCC-CCCC-------------------------cCCCCCeEEEEEEEEecCCceE
Confidence 1244444332 3331 0134789899998888777776
Q ss_pred ceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eee
Q 003305 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLT 468 (832)
Q Consensus 392 ~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~--gl~~~~~~tg-Tl~ 468 (832)
+..+||.+|+|+.||.|.++.. .. ..+|.+|.. ...++++|.|||.+++. +++......| .|+
T Consensus 250 -vv~G~V~~G~l~~Gd~v~i~P~-----~~----~~~VksI~~----~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~ 315 (446)
T PTZ00141 250 -VPVGRVETGILKPGMVVTFAPS-----GV----TTEVKSVEM----HHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVAS 315 (446)
T ss_pred -EEEEEEEcceEecCCEEEEccC-----Cc----EEEEEEEEe----cCcccCEECCCCEEEEEECCCCHHHcCCceEEe
Confidence 8899999999999999998632 11 268888874 34679999999999884 4332223456 665
Q ss_pred cC
Q 003305 469 NE 470 (832)
Q Consensus 469 ~~ 470 (832)
+.
T Consensus 316 ~~ 317 (446)
T PTZ00141 316 DS 317 (446)
T ss_pred cC
Confidence 53
No 43
>PLN03127 Elongation factor Tu; Provisional
Probab=99.97 E-value=8.2e-29 Score=279.97 Aligned_cols=289 Identities=22% Similarity=0.330 Sum_probs=198.7
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
..+..+||+++||+|||||||+++|........+........+|..++|++||+|++.....+.++
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-------------- 122 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA-------------- 122 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--------------
Confidence 446678999999999999999999974421111100111226899999999999999987776654
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCe-EEEEECCCcccccccCCHHH
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGEE 173 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~-ilviNKiD~~~~~~~~~~~~ 173 (832)
+.+++|||||||.+|..++.+++..+|++++|||+.+|+..||++++..+...++|. |+++||||+. . .++
T Consensus 123 --~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv----~--~~~ 194 (447)
T PLN03127 123 --KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV----D--DEE 194 (447)
T ss_pred --CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC----C--HHH
Confidence 679999999999999999999999999999999999999999999999999999995 6799999986 3 223
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcC
Q 003305 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (832)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (832)
..+.+. +++...+..+..+ +...++...|++.++. | .
T Consensus 195 ~~~~i~---~~i~~~l~~~~~~--------~~~vpiip~Sa~sa~~--------------------------g------~ 231 (447)
T PLN03127 195 LLELVE---MELRELLSFYKFP--------GDEIPIIRGSALSALQ--------------------------G------T 231 (447)
T ss_pred HHHHHH---HHHHHHHHHhCCC--------CCcceEEEeccceeec--------------------------C------C
Confidence 333332 2333333211110 0000111223321110 0 0
Q ss_pred CCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHH
Q 003305 254 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALL 333 (832)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 333 (832)
+ .....+ ....|+
T Consensus 232 n------------------------------------------------~~~~~~-------------------~i~~Ll 244 (447)
T PLN03127 232 N------------------------------------------------DEIGKN-------------------AILKLM 244 (447)
T ss_pred C------------------------------------------------cccccc-------------------hHHHHH
Confidence 0 000000 014578
Q ss_pred HHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcC
Q 003305 334 EMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 413 (832)
Q Consensus 334 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~ 413 (832)
+++.+++|.|.. +.++||.+.|..++..+..|. +..+||.+|+|+.||.|++++
T Consensus 245 ~~l~~~lp~p~r-------------------------~~~~pfr~~I~~vf~v~g~Gt-VvtG~v~~G~i~~Gd~v~i~p 298 (447)
T PLN03127 245 DAVDEYIPEPVR-------------------------VLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEIVG 298 (447)
T ss_pred HHHHHhCCCCCc-------------------------ccccceEeeEEEEEEcCCceE-EEEEEEEccEEecCCEEEEcc
Confidence 888888988721 134689888888888788886 899999999999999999876
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecC
Q 003305 414 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNE 470 (832)
Q Consensus 414 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i--~gl~~~~~~tg-Tl~~~ 470 (832)
++.. + ....+|..|... ..++++|.|||.+++ .|++....+.| .||+.
T Consensus 299 ~~~~-g----~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 299 LRPG-G----PLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred cCCC-C----cEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 4311 1 113688888754 356899999999887 46654333556 77764
No 44
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.5e-30 Score=263.30 Aligned_cols=288 Identities=23% Similarity=0.329 Sum_probs=200.3
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
..+..-||+-|||+|||||||+.++............-+..-.|..|+|+.|||||+...+.+...
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa-------------- 115 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETA-------------- 115 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeecc--------------
Confidence 345578999999999999999998854321111101112345789999999999999876655543
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcccccccCCHHH
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGEE 173 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~~~~~~~~~~~ 173 (832)
..++--+|||||.||+..|+.+..+.|||||||.|++|.++||++++-.|++-+++.| +|+||.|.. + |+ +
T Consensus 116 --~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V----~-d~-e 187 (449)
T KOG0460|consen 116 --KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLV----D-DP-E 187 (449)
T ss_pred --ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEeccccc----C-CH-H
Confidence 6688899999999999999999999999999999999999999999999999999865 699999976 2 22 2
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcC
Q 003305 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (832)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (832)
..+.++- +++..|..|.. .-...+|..||++-. +-|
T Consensus 188 ~leLVEm---E~RElLse~gf--------~Gd~~PvI~GSAL~A--------------------------Leg------- 223 (449)
T KOG0460|consen 188 MLELVEM---EIRELLSEFGF--------DGDNTPVIRGSALCA--------------------------LEG------- 223 (449)
T ss_pred HHHHHHH---HHHHHHHHcCC--------CCCCCCeeecchhhh--------------------------hcC-------
Confidence 2222221 23334433321 122235555655200 000
Q ss_pred CCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHH
Q 003305 254 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALL 333 (832)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 333 (832)
.+++ +..+ .+..||
T Consensus 224 -----------------------------------~~pe------------ig~~-------------------aI~kLl 237 (449)
T KOG0460|consen 224 -----------------------------------RQPE------------IGLE-------------------AIEKLL 237 (449)
T ss_pred -----------------------------------CCcc------------ccHH-------------------HHHHHH
Confidence 0000 0000 024589
Q ss_pred HHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcC
Q 003305 334 EMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 413 (832)
Q Consensus 334 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~ 413 (832)
|++.+|+|-|. .+-+.||+.-|-.++.-+.+|. ++.+|+-.|+|++|+++-++|
T Consensus 238 davDsyip~P~-------------------------R~~~~pFl~pie~vfsI~GRGT-VvtGrlERG~lKkG~e~eivG 291 (449)
T KOG0460|consen 238 DAVDSYIPTPE-------------------------RDLDKPFLLPIEDVFSIPGRGT-VVTGRLERGVLKKGDEVEIVG 291 (449)
T ss_pred HHHhccCCCcc-------------------------cccCCCceeehhheeeecCCce-EEEEEEeecccccCCEEEEec
Confidence 99999999993 1235788888888888888888 999999999999999999987
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecCC
Q 003305 414 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (832)
Q Consensus 414 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i--~gl~~~~~~tg-Tl~~~~ 471 (832)
.|-. - ..+|+.|-. ....+++|.|||-|++ +|++..-.+-| .++.+.
T Consensus 292 ~~~~--l-----kttvtgiem----F~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pG 341 (449)
T KOG0460|consen 292 HNKT--L-----KTTVTGIEM----FRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPG 341 (449)
T ss_pred cCcc--e-----eeEeehHHH----HHHHHHhcccccceehhhhcCCHHHHhcccEEecCC
Confidence 5522 1 134443321 3356899999999876 57765544666 666554
No 45
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.7e-29 Score=254.54 Aligned_cols=287 Identities=23% Similarity=0.350 Sum_probs=195.8
Q ss_pred hcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCc
Q 003305 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (832)
Q Consensus 13 ~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (832)
....+..-||+.+||+|||||||+.++...........+-...-.|..|+|++|||||+.+.+.+...
T Consensus 6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~------------ 73 (394)
T COG0050 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA------------ 73 (394)
T ss_pred hcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC------------
Confidence 34556788999999999999999999955432111111112335788999999999999988776654
Q ss_pred CCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcccccccCCH
Q 003305 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDG 171 (832)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~~~~~~~~~ 171 (832)
+.++..+|||||.||...|+.+..++|+|||||+|.+|.++||++++-.+.+.++|.| +|+||+|+. . |
T Consensus 74 ----~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv----d-d- 143 (394)
T COG0050 74 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV----D-D- 143 (394)
T ss_pred ----CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc----C-c-
Confidence 7789999999999999999999999999999999999999999999999999999866 599999987 3 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccC
Q 003305 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (832)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (832)
.+.. ...-.++..+|..|. |.-...+|+.+|++.. +-
T Consensus 144 ~ell---elVemEvreLLs~y~--------f~gd~~Pii~gSal~a--------------------------le------ 180 (394)
T COG0050 144 EELL---ELVEMEVRELLSEYG--------FPGDDTPIIRGSALKA--------------------------LE------ 180 (394)
T ss_pred HHHH---HHHHHHHHHHHHHcC--------CCCCCcceeechhhhh--------------------------hc------
Confidence 2222 222233444444332 1111224444443110 00
Q ss_pred cCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHH
Q 003305 252 PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSA 331 (832)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 331 (832)
.++. |...+..
T Consensus 181 -------------------------------------~~~~--------------------------------~~~~i~e 191 (394)
T COG0050 181 -------------------------------------GDAK--------------------------------WEAKIEE 191 (394)
T ss_pred -------------------------------------CCcc--------------------------------hHHHHHH
Confidence 0000 1111256
Q ss_pred HHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEE
Q 003305 332 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI 411 (832)
Q Consensus 332 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v 411 (832)
|||++.+|+|.|. .+.+.||.+-|-.++.-..+|. ++++||-.|+|+.|+.+-+
T Consensus 192 Lm~avd~yip~Pe-------------------------r~~dkPflmpvEdvfsIsgrgt-vvtGrVeRG~lkvg~evei 245 (394)
T COG0050 192 LMDAVDSYIPTPE-------------------------RDIDKPFLMPVEDVFSISGRGT-VVTGRVERGILKVGEEVEI 245 (394)
T ss_pred HHHHHHhcCCCCC-------------------------CcccccccccceeeEEEcCcee-EEEEEEeeeeeccCCEEEE
Confidence 8999999999993 1346789888888887777787 9999999999999999998
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecC
Q 003305 412 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNE 470 (832)
Q Consensus 412 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i--~gl~~~~~~tg-Tl~~~ 470 (832)
.|-. ..++ ..++.+- .-++..++..|||-+++ +|.+.--..-| .|+.+
T Consensus 246 vG~~--~~~k-----ttvtgve----mfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakp 296 (394)
T COG0050 246 VGIK--ETQK-----TTVTGVE----MFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKP 296 (394)
T ss_pred eccc--ccce-----eEEEhHH----HHHHHHhccccCCCcceEEEeccccceecceEeecC
Confidence 7633 1111 1222111 12345688889998765 45443222334 55544
No 46
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.96 E-value=5.5e-29 Score=256.80 Aligned_cols=197 Identities=42% Similarity=0.714 Sum_probs=172.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCcccc---ccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~---~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
|||+++||+|+|||||+++|++..+.+.+ ...+..+++|..++|++||+|+......+.|.. .+++
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~-----------~~~~ 69 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD-----------SKGK 69 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc-----------CCCC
Confidence 79999999999999999999999988763 223446789999999999999999988887751 1234
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHH
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (832)
.+.+++||||||.+|...+..+++.+|++|+|+|+.++...+++.+++.+...+.|.++++||+|+...+...+.++.++
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~ 149 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYF 149 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHH
Confidence 68999999999999999999999999999999999999999988888888778899999999999986666777888899
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHh
Q 003305 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 229 (832)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 229 (832)
++.++++++|..+..+..++ .+.|.|..+||.++|+..||+|++++|+++|
T Consensus 150 ~l~~~i~~~n~~~~~~~~~~--~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~ 200 (213)
T cd04167 150 KLRHIIDEVNNIIASFSTTL--SFLFSPENGNVCFASSKFGFCFTLESFAKKY 200 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCC--ceEeccCCCeEEEEecCCCeEEecHHHHhhh
Confidence 99999999999987654432 3678999999999999999999999999988
No 47
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=7e-28 Score=273.98 Aligned_cols=285 Identities=26% Similarity=0.395 Sum_probs=200.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-----eEeecCcccccccCceeeeeeEEEEeec
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYEM 81 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 81 (832)
+...||+++||+|||||||+++|++..|.+.... .|. .+++|+.++|++||+|++.....+.++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 4568999999999999999999999999886531 232 358999999999999999998888775
Q ss_pred cchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCC--ccchhHHHHHHHHHcCCCC-eEEEEE
Q 003305 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--GVCVQTETVLRQALGERIR-PVLTVN 158 (832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~--g~~~qt~~~~~~~~~~~~p-~ilviN 158 (832)
++.++|||||||.+|...+..+++.+|++++|||+++ |+..+++.++..+...++| +++++|
T Consensus 83 ---------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviN 147 (425)
T PRK12317 83 ---------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAIN 147 (425)
T ss_pred ---------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEE
Confidence 7899999999999999999999999999999999999 9999999999888888875 678999
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChH
Q 003305 159 KMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDES 238 (832)
Q Consensus 159 KiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~ 238 (832)
|+|+. .++.+ ++..+.++++..+..+.. .+...++...|+..|.+. +..
T Consensus 148 K~Dl~----~~~~~----~~~~~~~~i~~~l~~~g~--------~~~~~~ii~iSA~~g~gi---------------~~~ 196 (425)
T PRK12317 148 KMDAV----NYDEK----RYEEVKEEVSKLLKMVGY--------KPDDIPFIPVSAFEGDNV---------------VKK 196 (425)
T ss_pred ccccc----cccHH----HHHHHHHHHHHHHHhhCC--------CcCcceEEEeecccCCCc---------------ccc
Confidence 99987 54422 233344444444432111 111112333455444321 000
Q ss_pred HHHHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHH
Q 003305 239 KMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALM 318 (832)
Q Consensus 239 ~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~ 318 (832)
. ...-| |+
T Consensus 197 ~-~~~~w----y~------------------------------------------------------------------- 204 (425)
T PRK12317 197 S-ENMPW----YN------------------------------------------------------------------- 204 (425)
T ss_pred c-cCCCc----cc-------------------------------------------------------------------
Confidence 0 00001 10
Q ss_pred HHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003305 319 KRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (832)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV 398 (832)
-..|++++. .+|.|.. +.+.||.+.|..++..+..|. +..+||
T Consensus 205 ----------g~~L~~~l~-~~~~~~~-------------------------~~~~p~r~~i~~~~~~~g~G~-vv~G~v 247 (425)
T PRK12317 205 ----------GPTLLEALD-NLKPPEK-------------------------PTDKPLRIPIQDVYSISGVGT-VPVGRV 247 (425)
T ss_pred ----------HHHHHHHHh-cCCCCcc-------------------------ccCCCcEEEEEEEEeeCCCeE-EEEEEE
Confidence 023455543 3555510 135789999999888777776 889999
Q ss_pred eeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eeecC
Q 003305 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNE 470 (832)
Q Consensus 399 ~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~--gl~~~~~~tg-Tl~~~ 470 (832)
.+|+|+.||.|+++..+ . ..+|..|.. ...++++|.|||.|++. |++......| .|++.
T Consensus 248 ~~G~v~~Gd~v~i~P~~-----~----~~~VksI~~----~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 248 ETGVLKVGDKVVFMPAG-----V----VGEVKSIEM----HHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred eeccEecCCEEEECCCC-----C----eEEEEEEEE----CCcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 99999999999986422 1 268888874 34679999999998773 5443222445 66654
No 48
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.96 E-value=1.2e-27 Score=269.22 Aligned_cols=127 Identities=31% Similarity=0.349 Sum_probs=115.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-------eEeecCcccccccCceeeeeeEEEEeeccc
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRADEAERGITIKSTGISLYYEMTD 83 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-------~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~ 83 (832)
||+++||+|||||||+++|++.+|.+.+.. .|. .+++|..++|++||+|++.....+.|.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 799999999999999999999999987632 343 358999999999999999998888775
Q ss_pred hhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCc
Q 003305 84 DALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDR 162 (832)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~ 162 (832)
+++++|||||||.+|..++..++..+|+|++|||+.+|+.+||++++..+...++| +|+|+||||+
T Consensus 79 -------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 79 -------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred -------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 78999999999999999999999999999999999999999999999999888886 5679999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 146 ~ 146 (406)
T TIGR02034 146 V 146 (406)
T ss_pred c
Confidence 7
No 49
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.96 E-value=5.9e-27 Score=271.90 Aligned_cols=305 Identities=21% Similarity=0.292 Sum_probs=209.4
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+.++|+++||+|||||||+++|.... + ..+..+|+|+......+.|. +.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~--v--------------~~~e~~GIT~~ig~~~v~~~---------------~~ 134 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK--V--------------AQGEAGGITQHIGAYHVENE---------------DG 134 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC--c--------------ccccCCceeecceEEEEEEC---------------CC
Confidence 45799999999999999999994321 1 11123578888777666664 13
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHH
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (832)
..++|||||||.+|...+.++++.+|++|+|+|+.+|+.+||.++++++...++|+++++||+|+. +.+++++.+.
T Consensus 135 ~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~----~~~~e~v~~~ 210 (587)
T TIGR00487 135 KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKP----EANPDRVKQE 210 (587)
T ss_pred cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccc----cCCHHHHHHH
Confidence 389999999999999999999999999999999999999999999999988999999999999998 7665544333
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCce
Q 003305 178 FSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKW 257 (832)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~ 257 (832)
+++ .+.....+.. .. ++...|+..|.+
T Consensus 211 L~~----~g~~~~~~~~----~~-------~~v~iSAktGeG-------------------------------------- 237 (587)
T TIGR00487 211 LSE----YGLVPEDWGG----DT-------IFVPVSALTGDG-------------------------------------- 237 (587)
T ss_pred HHH----hhhhHHhcCC----Cc-------eEEEEECCCCCC--------------------------------------
Confidence 221 1111100000 00 111122222110
Q ss_pred EecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHHHHH
Q 003305 258 TTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMI 337 (832)
Q Consensus 258 ~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~ 337 (832)
+ ..|++.+.
T Consensus 238 ------------------------------------I-----------------------------------~eLl~~I~ 246 (587)
T TIGR00487 238 ------------------------------------I-----------------------------------DELLDMIL 246 (587)
T ss_pred ------------------------------------h-----------------------------------HHHHHhhh
Confidence 0 00111111
Q ss_pred h--cCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCC
Q 003305 338 F--HLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPN 415 (832)
Q Consensus 338 ~--~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n 415 (832)
. .++.+ ..++++|+.++|+++..++..|. ++++||++|+|+.||.|.+. +.
T Consensus 247 ~~~~~~~l-------------------------~~~~~~~~~~~V~ev~~~~g~G~-v~~~~V~~GtL~~Gd~iv~~-~~ 299 (587)
T TIGR00487 247 LQSEVEEL-------------------------KANPNGQASGVVIEAQLDKGRGP-VATVLVQSGTLRVGDIVVVG-AA 299 (587)
T ss_pred hhhhhccc-------------------------cCCCCCCceeEEEEEEEeCCCcE-EEEEEEEeCEEeCCCEEEEC-CC
Confidence 0 00000 12356899999999999998887 99999999999999999753 11
Q ss_pred CCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCC---------------------
Q 003305 416 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEV--------------------- 473 (832)
Q Consensus 416 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~--------------------- 473 (832)
..+|..++... ...+++|.||++|.|.|++.. ..+| +|+-..+.
T Consensus 300 ----------~~kVr~l~~~~---g~~v~~a~~g~~v~i~Gl~~~-p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~ 365 (587)
T TIGR00487 300 ----------YGRVRAMIDEN---GKSVKEAGPSKPVEILGLSDV-PAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSR 365 (587)
T ss_pred ----------ccEEEEEECCC---CCCCCEECCCCEEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 03666665544 456899999999999999874 2455 55522100
Q ss_pred -Cccccccccc----CCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEE
Q 003305 474 -DAHPIRAMKF----SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI 522 (832)
Q Consensus 474 -~~~~~~~~~~----~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~ 522 (832)
....+..+.. ...|.+.+.|++......+.|.++|.+|..+++++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 366 SVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred ccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE
Confidence 0011122211 124889999999999999999999999999999998743
No 50
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.96 E-value=3.1e-27 Score=269.75 Aligned_cols=132 Identities=28% Similarity=0.331 Sum_probs=117.5
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-------eEeecCcccccccCceeeeeeEEEE
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRADEAERGITIKSTGISLY 78 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-------~~~~d~~~~E~~rgiTi~~~~~~~~ 78 (832)
.+...||+|+||+|+|||||+++||+.+|.+.+.. .|. .+++|+.++|++||+|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 45678999999999999999999999999887632 343 2489999999999999999888777
Q ss_pred eeccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEE
Q 003305 79 YEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTV 157 (832)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilvi 157 (832)
++ +++++|||||||.+|..++..+++.+|+|++|||+.+|+..||+.++..+...+++ +|+++
T Consensus 104 ~~----------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvv 167 (474)
T PRK05124 104 TE----------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAV 167 (474)
T ss_pred cC----------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEE
Confidence 65 78999999999999999999999999999999999999999999999888888865 67799
Q ss_pred ECCCcc
Q 003305 158 NKMDRC 163 (832)
Q Consensus 158 NKiD~~ 163 (832)
||||+.
T Consensus 168 NKiD~~ 173 (474)
T PRK05124 168 NKMDLV 173 (474)
T ss_pred Eeeccc
Confidence 999987
No 51
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=3.1e-27 Score=268.60 Aligned_cols=288 Identities=24% Similarity=0.343 Sum_probs=200.3
Q ss_pred cccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCcccccccCceeeeeeEEEE
Q 003305 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLY 78 (832)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~ 78 (832)
...+..+||+++||+|||||||+++|++..|.+... ..|. .+++|..++|++||+|++.....+.
T Consensus 2 ~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 345678999999999999999999999999887642 1232 3579999999999999999988887
Q ss_pred eeccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc---cchhHHHHHHHHHcCCCC-eE
Q 003305 79 YEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG---VCVQTETVLRQALGERIR-PV 154 (832)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g---~~~qt~~~~~~~~~~~~p-~i 154 (832)
+. ++.++|||||||.+|...+..+++.+|++|+|||+++| ...++..++..+...+.+ +|
T Consensus 82 ~~----------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iI 145 (426)
T TIGR00483 82 TD----------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLI 145 (426)
T ss_pred cC----------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEE
Confidence 75 78999999999999999999999999999999999999 888888887777666664 66
Q ss_pred EEEECCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccC
Q 003305 155 LTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG 234 (832)
Q Consensus 155 lviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~ 234 (832)
+++||+|+. +++.+. +..+.+++..++..+.. .+....+...|+..|++..
T Consensus 146 VviNK~Dl~----~~~~~~----~~~~~~ei~~~~~~~g~--------~~~~~~~i~iSA~~g~ni~------------- 196 (426)
T TIGR00483 146 VAINKMDSV----NYDEEE----FEAIKKEVSNLIKKVGY--------NPDTVPFIPISAWNGDNVI------------- 196 (426)
T ss_pred EEEEChhcc----CccHHH----HHHHHHHHHHHHHHcCC--------CcccceEEEeecccccccc-------------
Confidence 799999997 655332 33333344444332110 0111122334555443220
Q ss_pred CChHHHHHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhh
Q 003305 235 VDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMG 314 (832)
Q Consensus 235 i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~ 314 (832)
... ... |.| . +
T Consensus 197 --~~~-~~~----------------------------------~w~---~---------------g-------------- 207 (426)
T TIGR00483 197 --KKS-ENT----------------------------------PWY---K---------------G-------------- 207 (426)
T ss_pred --ccc-cCC----------------------------------ccc---c---------------c--------------
Confidence 000 000 101 0 0
Q ss_pred HHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCccee
Q 003305 315 KALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFA 394 (832)
Q Consensus 315 ~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~ 394 (832)
..|++++.+ +|.|. .+.+.||.++|..++..+..|. ++
T Consensus 208 ---------------~~l~~~l~~-~~~~~-------------------------~~~~~p~r~~i~~v~~~~g~G~-vv 245 (426)
T TIGR00483 208 ---------------KTLLEALDA-LEPPE-------------------------KPTDKPLRIPIQDVYSITGVGT-VP 245 (426)
T ss_pred ---------------hHHHHHHhc-CCCCC-------------------------CccCCCcEEEEEEEEecCCCeE-EE
Confidence 235555533 45441 0135789999999988888887 89
Q ss_pred eeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE--eccccccccce-eeecC
Q 003305 395 FGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNE 470 (832)
Q Consensus 395 ~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i--~gl~~~~~~tg-Tl~~~ 470 (832)
.+||.+|+|+.||.|.+...+ . ..+|..|.. ...++++|.|||.+++ .+++....+.| .|++.
T Consensus 246 ~G~v~~G~i~~gd~v~i~P~~-----~----~~~VksI~~----~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 246 VGRVETGVLKPGDKVVFEPAG-----V----SGEVKSIEM----HHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred EEEEccceeecCCEEEECCCC-----c----EEEEEEEEE----CCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 999999999999999975321 1 268888874 3467899999999987 35433223455 66654
No 52
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.95 E-value=2.3e-26 Score=269.92 Aligned_cols=319 Identities=19% Similarity=0.261 Sum_probs=210.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+.++|+|+||+|||||||+++|....... +..+|+|.......+.|.. ++.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~------------~~~ 293 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEY------------KDE 293 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEe------------cCC
Confidence 467899999999999999999996543322 1235778776665555541 123
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHH
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (832)
++.++|||||||.+|...+.++++.+|++|||||+.+|+++||.++|..+...++|+|+++||+|+. +.+.+++.+
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~----~~~~e~v~~ 369 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKA----NANTERIKQ 369 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcc----ccCHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999998 655333322
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003305 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (832)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (832)
.+. ..+.....+. +. .++...|+..|.+
T Consensus 370 eL~----~~~ll~e~~g----~~-------vpvv~VSAktG~G------------------------------------- 397 (742)
T CHL00189 370 QLA----KYNLIPEKWG----GD-------TPMIPISASQGTN------------------------------------- 397 (742)
T ss_pred HHH----HhccchHhhC----CC-------ceEEEEECCCCCC-------------------------------------
Confidence 221 1111110000 00 0111222222110
Q ss_pred eEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHHHH
Q 003305 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (832)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (832)
+ ..|++.+
T Consensus 398 -------------------------------------I-----------------------------------deLle~I 405 (742)
T CHL00189 398 -------------------------------------I-----------------------------------DKLLETI 405 (742)
T ss_pred -------------------------------------H-----------------------------------HHHHHhh
Confidence 0 1112222
Q ss_pred HhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCC
Q 003305 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (832)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~ 416 (832)
..+.+.+ . ..+++++|+.++||++..++..|. ++++||++|+|+.||.|++.
T Consensus 406 ~~l~e~~----~-------------------lk~~~~~~~~g~V~e~~iD~~~G~-V~~~~V~sGtLr~GD~vv~g---- 457 (742)
T CHL00189 406 LLLAEIE----D-------------------LKADPTQLAQGIILEAHLDKTKGP-VATILVQNGTLHIGDIIVIG---- 457 (742)
T ss_pred hhhhhhh----c-------------------ccCCCCCCceEEEEEEEEcCCCce-EEEEEEEcCEEecCCEEEEC----
Confidence 1111000 0 012456789999999999999887 99999999999999999852
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCC-Cc------------------c
Q 003305 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEV-DA------------------H 476 (832)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~-~~------------------~ 476 (832)
.+.++++.+.+....++++|.||++|+|.||+.. ..+| +|.-.... .. .
T Consensus 458 ----------~~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~-~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~~~ 526 (742)
T CHL00189 458 ----------TSYAKIRGMINSLGNKINLATPSSVVEIWGLSSV-PATGEHFQVFNSEKEAKLKIIKNKENNKKDTTKRI 526 (742)
T ss_pred ----------CcceEEEEEEcCCCcCccEEcCCCceEecCcccC-CCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhccc
Confidence 1446778888888899999999999999999653 3567 54422110 00 0
Q ss_pred cccc----cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChhhH
Q 003305 477 PIRA----MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHL 538 (832)
Q Consensus 477 ~~~~----~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~GelHL 538 (832)
.+.. +...-.+.+.+-|.+...+-.+.+..+|.++..+. +.+ .++=+|.|.+.-
T Consensus 527 ~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~--v~i------~i~~~~vG~it~ 584 (742)
T CHL00189 527 TLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKK--VQL------NILYASLGEVTE 584 (742)
T ss_pred chHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCc--EEE------EEEEeecCCCCH
Confidence 0000 01112466778888888888888888888774332 222 234566676643
No 53
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.95 E-value=1.5e-26 Score=260.84 Aligned_cols=134 Identities=24% Similarity=0.231 Sum_probs=105.3
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccc---hhhc------
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD---DALK------ 87 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~---~~~~------ 87 (832)
+...||+++||+|||||||+.+| .| ..+|..++|++||||++..+..+.+.... .+.+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aL-----------tg--~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~ 98 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKAL-----------SG--VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGS 98 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHH-----------hC--CCcccchhhHHhCCchhccccccccccCcccCCcccccccCC
Confidence 45679999999999999999999 34 24678899999999999887766431000 0000
Q ss_pred ----cccCcC----CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-cchhHHHHHHHHHcCCCC-eEEEE
Q 003305 88 ----SYKGER----NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVLTV 157 (832)
Q Consensus 88 ----~~~~~~----~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-~~~qt~~~~~~~~~~~~p-~ilvi 157 (832)
...+.. ..-...++|||||||.+|..++.+++..+|+|+|||||.+| +++||++++..+...+++ +|+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 99 SKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred CcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 000000 11135799999999999999999999999999999999996 899999999988888886 56799
Q ss_pred ECCCcc
Q 003305 158 NKMDRC 163 (832)
Q Consensus 158 NKiD~~ 163 (832)
||||+.
T Consensus 179 NKiDlv 184 (460)
T PTZ00327 179 NKIDLV 184 (460)
T ss_pred eccccc
Confidence 999986
No 54
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.6e-25 Score=246.13 Aligned_cols=287 Identities=24% Similarity=0.335 Sum_probs=206.4
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCcccccccCceeeeeeEEEEee
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
++...|.+++||+|+|||||..+|||..|.+..+ ..|+ .|++|...+||+||+|+......|.-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 4457799999999999999999999999988653 2333 689999999999999999998887643
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-------cchhHHHHHHHHHcCCCC-
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR- 152 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~~p- 152 (832)
.+.++|+|+|||.||..+|+.+...+|.|||||||+-| ...||++|...+...|+.
T Consensus 254 ----------------~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~q 317 (603)
T KOG0458|consen 254 ----------------SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQ 317 (603)
T ss_pred ----------------ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcce
Confidence 88999999999999999999999999999999999965 467999999999999986
Q ss_pred eEEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhhh-hccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhh
Q 003305 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMA-TYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (832)
Q Consensus 153 ~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (832)
.||++||||.. +|+ .+++++|...++.+|. +++-+. ..+.|.|. ||+.|-..+-
T Consensus 318 livaiNKmD~V----~Ws----q~RF~eIk~~l~~fL~~~~gf~e-s~v~FIPi-------SGl~GeNL~k--------- 372 (603)
T KOG0458|consen 318 LIVAINKMDLV----SWS----QDRFEEIKNKLSSFLKESCGFKE-SSVKFIPI-------SGLSGENLIK--------- 372 (603)
T ss_pred EEEEeeccccc----Ccc----HHHHHHHHHHHHHHHHHhcCccc-CCcceEec-------ccccCCcccc---------
Confidence 67899999999 998 5678888888888883 322111 12344443 3443321100
Q ss_pred ccCCChHHHHHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHh
Q 003305 232 KFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKD 311 (832)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 311 (832)
+. ++..+-++.++
T Consensus 373 ---~~-----------------------------------------------------~~~~l~~WY~G----------- 385 (603)
T KOG0458|consen 373 ---IE-----------------------------------------------------QENELSQWYKG----------- 385 (603)
T ss_pred ---cc-----------------------------------------------------cchhhhhhhcC-----------
Confidence 00 00001111111
Q ss_pred hhhHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCc
Q 003305 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 391 (832)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~ 391 (832)
..||+.|-. +-.|.. +-+.||++-|..++..+..+
T Consensus 386 ------------------p~LL~~id~-~~~p~~-------------------------~~~kPl~ltIsdi~~~~~~~- 420 (603)
T KOG0458|consen 386 ------------------PTLLSQIDS-FKIPER-------------------------PIDKPLRLTISDIYPLPSSG- 420 (603)
T ss_pred ------------------ChHHHHHhh-ccCCCC-------------------------cccCCeEEEhhheeecCCCe-
Confidence 235555544 333310 12359999999998877766
Q ss_pred ceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eee
Q 003305 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLT 468 (832)
Q Consensus 392 ~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~--gl~~~~~~tg-Tl~ 468 (832)
+..++||-||.|++||.||++.+. . ...|..|-. .-.+...|.|||-|.+. |+....+..| +++
T Consensus 421 ~~i~gkiesG~iq~gqkl~i~~s~-----e----~~~vk~l~~----~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 421 VSISGKIESGYIQPGQKLYIMTSR-----E----DATVKGLTS----NDEPKTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred eEEEEEEeccccccCCEEEEecCc-----c----eEEEEeeec----CCCcceeEeeCCEEEEecCccChhhcccceeee
Confidence 589999999999999999986421 1 156666542 35678889999998774 5444444556 444
No 55
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=8.7e-27 Score=235.69 Aligned_cols=170 Identities=35% Similarity=0.469 Sum_probs=136.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccC--CceEeecCcccccccCceeeeeeEEEE--eeccchhhccccCc
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGISLY--YEMTDDALKSYKGE 92 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~d~~~~E~~rgiTi~~~~~~~~--~~~~~~~~~~~~~~ 92 (832)
+++|||+++||+|||||||+++|++..+.+.+... +....+|..++|++||+|+..+...+. +.
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~------------ 68 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN------------ 68 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES------------
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc------------
Confidence 46899999999999999999999999988765211 113468999999999999999998887 54
Q ss_pred CCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHH
Q 003305 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (832)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 172 (832)
.+.++|||||||.+|..++.++++.+|+||+|||+.+|++.|+++++.++...++|+++|+||||+. ..
T Consensus 69 ----~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~----~~--- 137 (188)
T PF00009_consen 69 ----NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI----EK--- 137 (188)
T ss_dssp ----SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS----HH---
T ss_pred ----ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch----hh---
Confidence 8999999999999999999999999999999999999999999999999999999999999999987 33
Q ss_pred HHHHHHHHHHHHhh-hhhhhccCCCCCCeeEeecccceecccCccceee
Q 003305 173 EAYQTFSRVVENAN-VIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 220 (832)
Q Consensus 173 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 220 (832)
.+++.++++. .++..+.... . ...++.+.|+..||++
T Consensus 138 ----~~~~~~~~~~~~l~~~~~~~~--~-----~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 138 ----ELEEIIEEIKEKLLKEYGENG--E-----EIVPVIPISALTGDGI 175 (188)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSTT--T-----STEEEEEEBTTTTBTH
T ss_pred ----hHHHHHHHHHHHhccccccCc--c-----ccceEEEEecCCCCCH
Confidence 3344444443 2222221110 0 1226778899999865
No 56
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.93 E-value=9e-25 Score=259.57 Aligned_cols=130 Identities=31% Similarity=0.360 Sum_probs=115.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-------eEeecCcccccccCceeeeeeEEEEee
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-------VRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-------~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
...||+|+||+|||||||+++|++..|.+... ..|. .+++|..++|++||+|++.....+.+.
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 34589999999999999999999999988732 2443 258999999999999999998888775
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEEC
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNK 159 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNK 159 (832)
+.+++|||||||.+|...+..++..+|++++|||+.+|+..||++++..+...+++ +|+++||
T Consensus 103 ----------------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK 166 (632)
T PRK05506 103 ----------------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNK 166 (632)
T ss_pred ----------------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEe
Confidence 78899999999999999999999999999999999999999999999988888865 5679999
Q ss_pred CCcc
Q 003305 160 MDRC 163 (832)
Q Consensus 160 iD~~ 163 (832)
||+.
T Consensus 167 ~D~~ 170 (632)
T PRK05506 167 MDLV 170 (632)
T ss_pred cccc
Confidence 9987
No 57
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.93 E-value=1.6e-24 Score=253.63 Aligned_cols=115 Identities=32% Similarity=0.421 Sum_probs=101.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
.|+++||+|||||||+++| .| ..+|..++|++||+|+......+... ++..+
T Consensus 2 ii~~~GhvdhGKTtLi~aL-----------tg--~~~dr~~eE~~rGiTI~l~~~~~~~~---------------~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAI-----------TG--VNADRLPEEKKRGMTIDLGYAYWPQP---------------DGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHH-----------hC--CCCccchhcccCCceEEeeeEEEecC---------------CCcEE
Confidence 5899999999999999999 33 23688899999999998876655442 25679
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCe-EEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~-ilviNKiD~~ 163 (832)
+|||||||.+|...+..++..+|++++|||+.+|+.+||++++..+...++|. |+|+||||+.
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 99999999999999999999999999999999999999999999888888885 6899999986
No 58
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.92 E-value=3.4e-25 Score=224.21 Aligned_cols=166 Identities=26% Similarity=0.348 Sum_probs=128.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.||+++||+|||||||+++|++......+........+|+.++|++||+|++.....+.+. +.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA----------------NRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC----------------CeE
Confidence 6999999999999999999998753222111111347899999999999999988777664 789
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcccccccCCHHHHHHHH
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQTF 178 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~~~~~~~~~~~~~~~~ 178 (832)
++|+|||||.+|..++.++++.+|+|++|||+.+|+..+++.+|+.+...++| +|+|+||||+. . + ++. +
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~----~-~-~~~---~ 137 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV----D-D-EEL---L 137 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC----C-c-HHH---H
Confidence 99999999999999999999999999999999999999999999999999998 56899999986 3 1 222 2
Q ss_pred HHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccce
Q 003305 179 SRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGW 218 (832)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~ 218 (832)
+.+.+++...+..+. +.+...++.+.|+..|+
T Consensus 138 ~~~~~~i~~~l~~~g--------~~~~~v~iipiSa~~g~ 169 (195)
T cd01884 138 ELVEMEVRELLSKYG--------FDGDNTPIVRGSALKAL 169 (195)
T ss_pred HHHHHHHHHHHHHhc--------ccccCCeEEEeeCcccc
Confidence 333334444444321 12223356667887776
No 59
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.92 E-value=6.7e-24 Score=238.84 Aligned_cols=136 Identities=28% Similarity=0.344 Sum_probs=106.1
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccch-----hhccc
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD-----ALKSY 89 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~-----~~~~~ 89 (832)
+.+...||+++||+|||||||+++| .| ..+|..++|++||+|+..+...+.|..... .....
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L-----------~~--~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQAL-----------TG--VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTE 71 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHh-----------hC--eecccCHhHHhcCcEEEecccccccccccccCcccccccc
Confidence 3455689999999999999999999 33 358999999999999998776655531100 00000
Q ss_pred --cC---cCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-chhHHHHHHHHHcCCCC-eEEEEECCCc
Q 003305 90 --KG---ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMDR 162 (832)
Q Consensus 90 --~~---~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~~p-~ilviNKiD~ 162 (832)
.. ......+.++|||||||.+|..++..++..+|++++|+|+.+|. ..++..++..+...+++ +++++||+|+
T Consensus 72 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 72 PKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 00 00111468999999999999999999999999999999999998 89999998888777774 7889999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 152 ~ 152 (411)
T PRK04000 152 V 152 (411)
T ss_pred c
Confidence 7
No 60
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=5.8e-23 Score=210.13 Aligned_cols=331 Identities=23% Similarity=0.309 Sum_probs=215.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhh----------
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDAL---------- 86 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~---------- 86 (832)
+...||+.+||+|||||||+.+| .| .-+|.+.+|.+|||||+..++...+..+.+--
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Al-----------sG--vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~ 74 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKAL-----------SG--VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPK 74 (415)
T ss_pred CcceEeeeeeecccchhhheehh-----------hc--eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCC
Confidence 44579999999999999999999 66 45889999999999999887766543222100
Q ss_pred ccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-cchhHHHHHHHHHcCCCC-eEEEEECCCccc
Q 003305 87 KSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVLTVNKMDRCF 164 (832)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-~~~qt~~~~~~~~~~~~p-~ilviNKiD~~~ 164 (832)
+..+.....--.++.|+|+|||+-++..|.++...+|+|+|||+|++. .++||++|+-.+.-.+++ +|++.||+|+.
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV- 153 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV- 153 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee-
Confidence 111111112245899999999999999999999999999999999985 699999999888778886 55799999987
Q ss_pred ccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHh
Q 003305 165 LELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERL 244 (832)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~ 244 (832)
+.+++.+.++++.+.+.-... + ..++.
T Consensus 154 -----~~E~AlE~y~qIk~FvkGt~A---e-----------~aPII---------------------------------- 180 (415)
T COG5257 154 -----SRERALENYEQIKEFVKGTVA---E-----------NAPII---------------------------------- 180 (415)
T ss_pred -----cHHHHHHHHHHHHHHhccccc---C-----------CCcee----------------------------------
Confidence 456777777766543221110 0 00000
Q ss_pred hcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhc
Q 003305 245 WGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQT 324 (832)
Q Consensus 245 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 324 (832)
|+.++.. .|
T Consensus 181 ---------------------------------PiSA~~~----------------~N---------------------- 189 (415)
T COG5257 181 ---------------------------------PISAQHK----------------AN---------------------- 189 (415)
T ss_pred ---------------------------------eehhhhc----------------cC----------------------
Confidence 0110000 01
Q ss_pred cccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCC--------Ccceeee
Q 003305 325 WLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDK--------GRFFAFG 396 (832)
Q Consensus 325 ~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~--------g~~l~~~ 396 (832)
++.|+++|.+|+|.|. .|.+.|..+||...+..+.. |+ +.=+
T Consensus 190 ----IDal~e~i~~~IptP~-------------------------rd~~~~p~m~v~RSFDVNkPGt~~~~L~GG-ViGG 239 (415)
T COG5257 190 ----IDALIEAIEKYIPTPE-------------------------RDLDKPPRMYVARSFDVNKPGTPPEELKGG-VIGG 239 (415)
T ss_pred ----HHHHHHHHHHhCCCCc-------------------------cCCCCCceEEEEeecccCCCCCCHHHccCc-eecc
Confidence 2578999999999992 24567788888888764433 33 5667
Q ss_pred eeeeeeeeCCCEEEEcCCCCCCCCccc----cceeeeceEEEEecCceeeeCcccCCCEEEE-eccccccccceeeecCC
Q 003305 397 RVFSGKVSTGLKVRIMGPNYVPGEKKD----LYVKSVQRTVIWMGKKQETVEDVPCGNTVAM-VGLDQFITKNATLTNEK 471 (832)
Q Consensus 397 RV~sG~L~~g~~v~v~~~n~~~~~~~~----~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i-~gl~~~~~~tgTl~~~~ 471 (832)
-+.+|.|+.||++-+- |.....+..+ ....+|.+|+ + ....+++|.+|-.++| ++|+.++++.+-|...-
T Consensus 240 sl~~G~l~vGDEIEIr-PGi~v~k~~k~~~~pi~T~i~Sl~---a-g~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V 314 (415)
T COG5257 240 SLVQGVLRVGDEIEIR-PGIVVEKGGKTVWEPITTEIVSLQ---A-GGEDVEEARPGGLVGVGTKLDPTLTKADALVGQV 314 (415)
T ss_pred eeeeeeEecCCeEEec-CCeEeecCCceEEEEeeEEEEEEE---e-CCeeeeeccCCceEEEecccCcchhhhhhhcccc
Confidence 7889999999999853 2211111110 1123444443 2 4467999999999888 47888776655444321
Q ss_pred CCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChh
Q 003305 472 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGEL 536 (832)
Q Consensus 472 ~~~~~~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~Gel 536 (832)
.- .+=..| +...++.+|-. -|.++.-.+-.++|+.-.++|.++...|.-
T Consensus 315 ----~G-~pG~lP-pv~~~~~ie~~----------LL~RvvG~~~e~kvepik~~E~Lml~VGta 363 (415)
T COG5257 315 ----VG-KPGTLP-PVWTSIRIEYH----------LLERVVGTKEELKVEPIKTNEVLMLNVGTA 363 (415)
T ss_pred ----cc-CCCCCC-CceEEEEEEee----------ehhhhhCcccccccccccCCCeEEEEeecc
Confidence 00 011111 33444555532 244555555667776557888888777753
No 61
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.91 E-value=6.2e-23 Score=231.25 Aligned_cols=133 Identities=29% Similarity=0.356 Sum_probs=104.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccch-----hhcc-ccC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD-----ALKS-YKG 91 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~-----~~~~-~~~ 91 (832)
...||+++||+|||||||+++| .+ ..+|..++|++||+|+......+.+..... .... ..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~L-----------t~--~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKAL-----------TG--VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVC 69 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHH-----------hC--eecccCHhHHHcCceeEecccccccccccccCccccccccccc
Confidence 4579999999999999999999 23 247889999999999998876665431100 0000 000
Q ss_pred c----CCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-chhHHHHHHHHHcCCCC-eEEEEECCCcc
Q 003305 92 E----RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMDRC 163 (832)
Q Consensus 92 ~----~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~~p-~ilviNKiD~~ 163 (832)
. .......++|||||||.+|..++.+++..+|++++|||+++|. ..|+++++..+...+++ +++++||+|+.
T Consensus 70 ~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 70 PNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 0 0112468999999999999999999999999999999999998 89999999888777775 67899999987
No 62
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=1.2e-22 Score=237.34 Aligned_cols=114 Identities=36% Similarity=0.446 Sum_probs=103.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++||+|||||||+++|. |. .+|..++|+++|+|++.....+.+. ++.+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt-----------g~--~~d~~~eE~~rGiTid~~~~~~~~~----------------~~~v 52 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT-----------GI--AADRLPEEKKRGMTIDLGFAYFPLP----------------DYRL 52 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh-----------Cc--cCcCChhHhcCCceEEeEEEEEEeC----------------CEEE
Confidence 79999999999999999993 31 2577888999999999887777664 5899
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~ 163 (832)
+|||||||.+|...+..++..+|++++|||+++|+.+||.+++..+...++| +++++||||+.
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999888888999 89999999987
No 63
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.90 E-value=4e-23 Score=212.21 Aligned_cols=127 Identities=28% Similarity=0.300 Sum_probs=112.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCC---------------ceEeecCcccccccCceeeeeeEEEEeeccchh
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG---------------DVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g---------------~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (832)
||+|+||+|||||||+++|++.+|.+.....| ..+++|..++|++||+|++.....+.|.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 68999999999999999999999988732111 1468999999999999999999888775
Q ss_pred hccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcc
Q 003305 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (832)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~ 163 (832)
+..++|||||||.+|..++..+++.+|++|+|+|+++|...+++.++..+...+.| +|+|+||+|+.
T Consensus 76 -----------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 76 -----------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred -----------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 78999999999999999999999999999999999999999998888888777766 56689999987
No 64
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.6e-22 Score=219.68 Aligned_cols=125 Identities=29% Similarity=0.438 Sum_probs=109.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..-|.|+||+|||||||+++|-...-+... .| |||.......+... ++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E--~G--------------GITQhIGAF~V~~p---------------~G 200 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGE--AG--------------GITQHIGAFTVTLP---------------SG 200 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhh--cC--------------CccceeceEEEecC---------------CC
Confidence 5678999999999999999999554433333 55 79988888777765 46
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHH
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (832)
..|+|+|||||.-|.....++...+|.+||||.|.+|+.+||.+.+.+|...++|+|+++||||++ +++|+.+++.
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp----~a~pekv~~e 276 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP----GANPEKVKRE 276 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC----CCCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999 9998876544
No 65
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.4e-22 Score=208.42 Aligned_cols=152 Identities=28% Similarity=0.335 Sum_probs=127.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc-------------cCCc----eEeecCcccccccCceeeeeeEEEEe
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-------------VAGD----VRMTDTRADEAERGITIKSTGISLYY 79 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~-------------~~g~----~~~~d~~~~E~~rgiTi~~~~~~~~~ 79 (832)
+...++..+|++|.|||||+.+||+.+..+-.. ..|+ .-..|-...|||.||||+..+..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 345688999999999999999999998766332 0111 12578889999999999999887766
Q ss_pred eccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEE
Q 003305 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVN 158 (832)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviN 158 (832)
. ..++.+.|||||+.|...|.++.+-||.||++|||..|+..||+.|.-.+.-.+++.+ +++|
T Consensus 84 ~----------------KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVN 147 (431)
T COG2895 84 E----------------KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVN 147 (431)
T ss_pred c----------------cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEe
Confidence 5 7899999999999999999999999999999999999999999999888888999865 6999
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHhhhhhhhc
Q 003305 159 KMDRCFLELQVDGEEAYQTFSRVVENANVIMATY 192 (832)
Q Consensus 159 KiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (832)
|||+. +++ .+.+++|.+++..+....
T Consensus 148 KmDLv----dy~----e~~F~~I~~dy~~fa~~L 173 (431)
T COG2895 148 KMDLV----DYS----EEVFEAIVADYLAFAAQL 173 (431)
T ss_pred eeccc----ccC----HHHHHHHHHHHHHHHHHc
Confidence 99999 887 455777777777666543
No 66
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.89 E-value=5.1e-23 Score=213.14 Aligned_cols=127 Identities=34% Similarity=0.426 Sum_probs=112.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCce-----EeecCcccccccCceeeeeeEEEEeeccchh
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGDV-----RMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~~-----~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (832)
||+++||+|||||||+++|++.+|.+.+.. .|.. +++|+.++|++||+|++.....+.|.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 799999999999999999999999887532 2322 37999999999999999999998886
Q ss_pred hccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCC-------ccchhHHHHHHHHHcCCC-CeEEEE
Q 003305 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------GVCVQTETVLRQALGERI-RPVLTV 157 (832)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~-------g~~~qt~~~~~~~~~~~~-p~ilvi 157 (832)
++.+++||||||.+|..++..+++.+|++|+|||+++ ++..++..++..+...+. |+++|+
T Consensus 76 -----------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 76 -----------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred -----------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 8899999999999999999999999999999999998 577789888888777775 566799
Q ss_pred ECCCcc
Q 003305 158 NKMDRC 163 (832)
Q Consensus 158 NKiD~~ 163 (832)
||||+.
T Consensus 145 NK~Dl~ 150 (219)
T cd01883 145 NKMDDV 150 (219)
T ss_pred Eccccc
Confidence 999987
No 67
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.8e-21 Score=212.26 Aligned_cols=130 Identities=28% Similarity=0.410 Sum_probs=109.0
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..-|+++||+|||||||++.+-..+ +....+| |||.......+.++. .+.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~--Va~~EaG--------------GITQhIGA~~v~~~~-------------~~~ 54 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN--VAAGEAG--------------GITQHIGAYQVPLDV-------------IKI 54 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc--cccccCC--------------ceeeEeeeEEEEecc-------------CCC
Confidence 44679999999999999999994433 2222255 789988888777640 024
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHH
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (832)
..++|||||||+-|.....++...+|.||||||+.+|+++||.+.+.+++..++|+++++||||++ ..+|+.....
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~----~~np~~v~~e 130 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKP----EANPDKVKQE 130 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCC----CCCHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999 8887765544
Q ss_pred HHH
Q 003305 178 FSR 180 (832)
Q Consensus 178 ~~~ 180 (832)
+++
T Consensus 131 l~~ 133 (509)
T COG0532 131 LQE 133 (509)
T ss_pred HHH
Confidence 443
No 68
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.88 E-value=3e-23 Score=178.14 Aligned_cols=80 Identities=55% Similarity=1.046 Sum_probs=76.4
Q ss_pred eeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeecC
Q 003305 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (832)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 806 (832)
||||+|||+||++++|+|+++|++|||+|++++..+++..+.|+|++|++|+|||+++||++|+|+|+|+|+|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998887765558999999999999999999999999999999999999986
No 69
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.7e-21 Score=206.87 Aligned_cols=114 Identities=37% Similarity=0.457 Sum_probs=105.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
.|+..||++||||||+.++ .| ..+|..++|++||+|++.....+... ++.+
T Consensus 2 ii~t~GhidHgkT~L~~al-----------tg--~~~d~l~EekKRG~TiDlg~~y~~~~----------------d~~~ 52 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKAL-----------TG--GVTDRLPEEKKRGITIDLGFYYRKLE----------------DGVM 52 (447)
T ss_pred eEEEeeeeeccchhhhhhh-----------cc--cccccchhhhhcCceEeeeeEeccCC----------------CCce
Confidence 5899999999999999999 44 46899999999999999988776665 6699
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCe-EEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~-ilviNKiD~~ 163 (832)
.|||+|||+||...+..++...|.|+||||+.+|+++||.+++..+...+++. ++|+||+|+.
T Consensus 53 ~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 53 GFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred EEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999987 7899999976
No 70
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=203.65 Aligned_cols=291 Identities=22% Similarity=0.349 Sum_probs=204.9
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccc-----hhhcccc
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-----DALKSYK 90 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-----~~~~~~~ 90 (832)
.....+|++.||+|||||||+.+| .+|..+..+-+...++|..++|.+||.|-+.+..-+.|.... |++.+-.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEE--EecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 345679999999999999999999 555555542222458999999999999999988888776422 1111111
Q ss_pred Cc--CCCCceEEEEEeCCCCCCcHHHHHHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCccccc
Q 003305 91 GE--RNGNEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLE 166 (832)
Q Consensus 91 ~~--~~~~~~~i~liDTPGh~df~~~~~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~ 166 (832)
.. .+..+..+.|+||-||+.+...+++++ ...|..+|||.|.+|++..|++++..+....+|+|++++|+|+.
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~--- 268 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV--- 268 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC---
Confidence 11 233467899999999999999999999 57899999999999999999999999999999999999999987
Q ss_pred ccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhc
Q 003305 167 LQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWG 246 (832)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~ 246 (832)
.- ++++.+++++..+|+..+ .+|+--.- .|..-+....-
T Consensus 269 -~d------dr~~~v~~ei~~~Lk~v~--------------Rip~~vk~-------------------~~d~v~aa~a~- 307 (527)
T COG5258 269 -PD------DRFQGVVEEISALLKRVG--------------RIPLIVKD-------------------TDDVVLAAKAM- 307 (527)
T ss_pred -cH------HHHHHHHHHHHHHHHHhc--------------ccceeeec-------------------cchhHHhhhhh-
Confidence 32 356667777766665321 11211000 00000000000
Q ss_pred CcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccc
Q 003305 247 ENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWL 326 (832)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~ 326 (832)
+.+ +..+
T Consensus 308 ------k~~-------------------------------------------------------------------~~vv 314 (527)
T COG5258 308 ------KAG-------------------------------------------------------------------RGVV 314 (527)
T ss_pred ------hcC-------------------------------------------------------------------CceE
Confidence 000 0012
Q ss_pred cc---------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeee
Q 003305 327 PA---------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGR 397 (832)
Q Consensus 327 P~---------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~R 397 (832)
|+ --.||+-+...||.-. ..+.++||.+||-|++.....|. ++.+-
T Consensus 315 Pi~~tSsVTg~GldlL~e~f~~Lp~rr------------------------~~~d~g~flmYId~iYsVtGVGt-VvsGs 369 (527)
T COG5258 315 PIFYTSSVTGEGLDLLDEFFLLLPKRR------------------------RWDDEGPFLMYIDKIYSVTGVGT-VVSGS 369 (527)
T ss_pred EEEEEecccCccHHHHHHHHHhCCccc------------------------ccCCCCCeEEEEEeeEEEeeeEE-EEeee
Confidence 21 1245666666666531 12456899999999999988888 89999
Q ss_pred eeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--cccc
Q 003305 398 VFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQ 459 (832)
Q Consensus 398 V~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~--gl~~ 459 (832)
|-||+|+.||+++ +||+ +..++.+.+|++|.. +...|++|.||+|+.++ |.+.
T Consensus 370 V~~G~l~~gd~vl-lGP~----~~G~fr~v~vkSIem----h~~rvdsa~aG~iig~Al~gv~~ 424 (527)
T COG5258 370 VKSGILHVGDTVL-LGPF----KDGKFREVVVKSIEM----HHYRVDSAKAGSIIGIALKGVEK 424 (527)
T ss_pred EEeeeeccCCEEE-EccC----CCCcEEEEEEEEEEE----eeEEeccccCCcEEEEEecccCH
Confidence 9999999999998 4655 223466688888874 66789999999997664 6554
No 71
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=5.9e-21 Score=194.08 Aligned_cols=144 Identities=40% Similarity=0.653 Sum_probs=119.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
++|||+++|+.|+|||||+++|++..+.+.....-..+.+|+.+.|..+|+|+......+.+. .
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~----------------~ 64 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK----------------D 64 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC----------------C
Confidence 479999999999999999999998776655421112356888899999999999888777775 7
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHH
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (832)
+.+++||||||.+|...+..+++.+|++++|+|++++...++..++..+...++|+++++||+|+. ....+...+.
T Consensus 65 ~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~----~~~~~~~~~~ 140 (194)
T cd01891 65 TKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----DARPEEVVDE 140 (194)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHH
Confidence 899999999999999999999999999999999999988888888888878899999999999987 5554444444
Q ss_pred HHHH
Q 003305 178 FSRV 181 (832)
Q Consensus 178 ~~~~ 181 (832)
+.+.
T Consensus 141 ~~~~ 144 (194)
T cd01891 141 VFDL 144 (194)
T ss_pred HHHH
Confidence 4443
No 72
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=5.6e-20 Score=214.38 Aligned_cols=130 Identities=28% Similarity=0.323 Sum_probs=88.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCc--CCC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE--RNG 95 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~~~ 95 (832)
+...|+++||+|||||||+++|.+....... +| |+|.......+.+............. ..-
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g--------------~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~ 68 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AG--------------GITQHIGATEVPIDVIEKIAGPLKKPLPIKL 68 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCC--CC--------------ceEEeeceeeccccccccccceecccccccc
Confidence 3457999999999999999999544321111 22 22222221111111000000000000 000
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+-..++|||||||.+|...+.++++.+|++++|+|+++|+.+|+..++..+...++|+++++||+|+.
T Consensus 69 ~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 69 KIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred ccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 01137999999999999999999999999999999999999999999998888999999999999985
No 73
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.83 E-value=5.5e-21 Score=168.05 Aligned_cols=85 Identities=38% Similarity=0.529 Sum_probs=79.3
Q ss_pred eeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEeccee
Q 003305 724 RLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWD 803 (832)
Q Consensus 724 ~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~ 803 (832)
+||||||+++|.+|++++|+|+++|++|||+|+++... +++++.|+|.+|+++++||.++||++|+|+|+|+++|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 68999999999999999999999999999999999987 33699999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 003305 804 MMSSDP 809 (832)
Q Consensus 804 ~~~~~~ 809 (832)
++++++
T Consensus 80 ~~~~~~ 85 (89)
T PF00679_consen 80 PVPGDI 85 (89)
T ss_dssp EESHHH
T ss_pred ECCCCh
Confidence 999986
No 74
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.4e-20 Score=198.06 Aligned_cols=153 Identities=22% Similarity=0.317 Sum_probs=126.4
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-----eEeecCcccccccCceeeeeeEEEEee
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
+....|+.++||+++||||+-..+++..|.++.+. .++ .|++|+..+|+++|-|+......|...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 45678999999999999999999999998876541 111 578999999999999999999988876
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-------chhHHHHHHHHHcCCCC-
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR- 152 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-------~~qt~~~~~~~~~~~~p- 152 (832)
..+++++|+|||-.|..+++.++.+||.++||++|..|- ..||+++...+...++.
T Consensus 156 ----------------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~ 219 (501)
T KOG0459|consen 156 ----------------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 219 (501)
T ss_pred ----------------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccce
Confidence 789999999999999999999999999999999998652 45999999888888886
Q ss_pred eEEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhhh
Q 003305 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMA 190 (832)
Q Consensus 153 ~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (832)
.|+++||||-+.. +|+ .+++.++.+.+..+|.
T Consensus 220 lVv~vNKMddPtv--nWs----~eRy~E~~~k~~~fLr 251 (501)
T KOG0459|consen 220 LIVLINKMDDPTV--NWS----NERYEECKEKLQPFLR 251 (501)
T ss_pred EEEEEEeccCCcc--Ccc----hhhHHHHHHHHHHHHH
Confidence 5569999998733 333 2455556565555554
No 75
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=8.5e-20 Score=182.71 Aligned_cols=132 Identities=45% Similarity=0.697 Sum_probs=113.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
|||+++|++|+|||||+++|++..+.+.+. .....++|+.+.|+++|+|.....+.+.|.. .+++++.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------~~~~~~~ 68 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKA-----------KDGQEYL 68 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEec-----------CCCCcEE
Confidence 799999999999999999999988877652 1224688999999999999988877776631 1235788
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++|||||||.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++++||+|+.
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 69 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred EEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999999988888888877777889999999999986
No 76
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.83 E-value=4.7e-21 Score=167.14 Aligned_cols=83 Identities=36% Similarity=0.558 Sum_probs=78.3
Q ss_pred eeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceee
Q 003305 725 LLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDM 804 (832)
Q Consensus 725 LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (832)
||||||+++|.||++++|+|+++|++|||.|++++..+ +.+.|+|++|+++++||.++||++|+|+|+|+++|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG--GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC--CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceE
Confidence 69999999999999999999999999999999888544 4789999999999999999999999999999999999999
Q ss_pred cCCCC
Q 003305 805 MSSDP 809 (832)
Q Consensus 805 ~~~~~ 809 (832)
+|+++
T Consensus 79 ~~~~~ 83 (85)
T smart00838 79 VPKSI 83 (85)
T ss_pred CChhh
Confidence 99764
No 77
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=2.3e-18 Score=200.00 Aligned_cols=129 Identities=29% Similarity=0.310 Sum_probs=90.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhcccc--CcCCCC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK--GERNGN 96 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~--~~~~~~ 96 (832)
..-|+++||+|||||||+++|.+..-.... +| |+|.......+.+........... .....+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e--~g--------------giTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~ 67 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKRE--AG--------------GITQHIGATEIPMDVIEGICGDLLKKFKIRLK 67 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccccc--CC--------------ceecccCeeEeeeccccccccccccccccccc
Confidence 457999999999999999999655321111 22 334333322222210000000000 000001
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
...++|||||||.+|...+.++++.+|++++|+|+++|+.+|+..++..+...++|.++++||+|+.
T Consensus 68 ~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 68 IPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred cCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 1248999999999999999999999999999999999999999999988888899999999999986
No 78
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.82 E-value=1.8e-20 Score=161.57 Aligned_cols=80 Identities=66% Similarity=1.192 Sum_probs=76.2
Q ss_pred eeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeecC
Q 003305 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (832)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 806 (832)
||||+++|++|++++|+|+++|++|||.|++++..++++.+.|+|.+|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 89999999999999999999999999999999876655669999999999999999999999999999999999999986
No 79
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.1e-19 Score=182.92 Aligned_cols=129 Identities=26% Similarity=0.358 Sum_probs=109.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..|++++||+|||||||+.+|.. .|++...|..++..+||+|.+.....+..... ..-+.+...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~---------~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~p-------arLpq~e~l 70 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSE---------LGSTAAFDKHPQSTERGITLDLGFSTMTVLSP-------ARLPQGEQL 70 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHh---------hccchhhccCCcccccceeEeecceeeecccc-------cccCccccc
Confidence 36999999999999999999943 45556789999999999999988766655321 111344457
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++++||||||..++..++.+....|.+++|||+..|.+.||.+.+-.......+.++++||+|..
T Consensus 71 q~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~l 135 (522)
T KOG0461|consen 71 QFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVL 135 (522)
T ss_pred eeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccc
Confidence 89999999999999999999999999999999999999999999877777778899999999976
No 80
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.81 E-value=3.1e-20 Score=173.37 Aligned_cols=99 Identities=26% Similarity=0.358 Sum_probs=87.6
Q ss_pred hhcCCchhccCeEEEeccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeecccccccc
Q 003305 622 EEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHR 701 (832)
Q Consensus 622 ~~~~~~~~~~~~i~~~~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~ 701 (832)
.++||+..+++.+|.++|...++|+|.+++.+..++++++++|++||++|+++|||+|+||.||+|+|.|+.+|. .++
T Consensus 22 ~~~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s 99 (120)
T PF03764_consen 22 RQYGGKRQFAKVILRVEPLEGGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE--VDS 99 (120)
T ss_dssp EECTSSEEEEEEEEEEEETSTSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T--TTB
T ss_pred HHhCCCCceEEEEEEEeecccCCceeeeccccccccHHHHHHHhhhhhheecccccCCCceEEEEEEEEEeeecC--CcC
Confidence 357888888999999999887789999999999999999999999999999999999999999999999999996 334
Q ss_pred CCCchHHHHHHHHHHHHHhcC
Q 003305 702 GGGQVIPTARRVIYASQLTAK 722 (832)
Q Consensus 702 ~~~~~~~a~~~a~~~al~~a~ 722 (832)
+..+|++|+++||++||++|+
T Consensus 100 ~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 100 SPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHS-
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 456789999999999999985
No 81
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.81 E-value=2.6e-20 Score=159.58 Aligned_cols=78 Identities=26% Similarity=0.519 Sum_probs=74.6
Q ss_pred eeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeecC
Q 003305 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (832)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 806 (832)
||||+++|.||++++|+|+++|++|||+|.+++..+ +.+.|+|.+|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE--DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC--CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999998654 478999999999999999999999999999999999999986
No 82
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.80 E-value=4.6e-20 Score=158.02 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=74.3
Q ss_pred eeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeecC
Q 003305 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (832)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 806 (832)
||||+++|+||++++|+|+++|++|||+|.+++..+ +.+.|+|.+|++|++||.++||++|+|+|+|+++|+||++|+
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG--DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC--CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999888654 589999999999999999999999999999999999999984
No 83
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=1.8e-19 Score=184.40 Aligned_cols=131 Identities=27% Similarity=0.271 Sum_probs=103.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhc-----------c
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALK-----------S 88 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~-----------~ 88 (832)
+||+++||.|||||||+++| .| ..+|..+.|.+||+|+..+...+.|....+... .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l-----------~~--~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKAL-----------SG--VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHH-----------hC--CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 58999999999999999999 33 336888999999999999988887741100000 0
Q ss_pred ccC------cCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCC-ccchhHHHHHHHHHcCCC-CeEEEEECC
Q 003305 89 YKG------ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERI-RPVLTVNKM 160 (832)
Q Consensus 89 ~~~------~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~-g~~~qt~~~~~~~~~~~~-p~ilviNKi 160 (832)
... ......++++|||||||.+|..++.++++.+|++++|+|+++ +...++..++..+...++ |+++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 000 011123789999999999999999999999999999999998 467888888887766676 577899999
Q ss_pred Ccc
Q 003305 161 DRC 163 (832)
Q Consensus 161 D~~ 163 (832)
|+.
T Consensus 148 Dl~ 150 (203)
T cd01888 148 DLV 150 (203)
T ss_pred hcc
Confidence 986
No 84
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.80 E-value=1e-19 Score=153.83 Aligned_cols=73 Identities=41% Similarity=0.665 Sum_probs=68.3
Q ss_pred CCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcC
Q 003305 485 VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSD 559 (832)
Q Consensus 485 ~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~ 559 (832)
|+|+++++|+|.+++|.++|.+||++|++|||+|++.+| +|||++|+||||+|||++++||+++| |+++++++
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~--~v~v~~~~ 75 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF--GVEVEFGK 75 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT--CEBEEEE-
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH--CCeeEecC
Confidence 499999999999999999999999999999999999998 89999999999999999999999999 99999874
No 85
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.79 E-value=2.9e-19 Score=184.90 Aligned_cols=140 Identities=25% Similarity=0.282 Sum_probs=111.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-eEeecCcccccccCceeeeeeEEEEeeccchhhcccc--------C
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK--------G 91 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~--------~ 91 (832)
+|+++||.++|||||+++|.. +..... .|. ...+|.+++|.+||+|+..+...+.+...+..++... .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~~-~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDNG-RGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIE 77 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCCC-CCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccce
Confidence 478999999999999999965 333332 232 3578999999999999877665565554332222110 1
Q ss_pred cCCCCceEEEEEeCCCCCCcHHHHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 92 ERNGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+.+++.++|+|||||.+|..++.+++. .+|++++|||+.+|+..+++.++..+...++|+++++||+|+.
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 12334679999999999999999999986 7999999999999999999999999999999999999999976
No 86
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.79 E-value=8.6e-20 Score=156.56 Aligned_cols=78 Identities=32% Similarity=0.566 Sum_probs=74.5
Q ss_pred eeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeecC
Q 003305 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (832)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 806 (832)
||||+++|+||++++|+|+++|++|||.|++++..+ +.+.|+|.+|++|++||.++||++|+|+|+++++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG--GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC--CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999988654 478999999999999999999999999999999999999986
No 87
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.78 E-value=2.7e-19 Score=153.49 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=73.8
Q ss_pred eeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeec
Q 003305 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM 805 (832)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~ 805 (832)
||||+++|.||++++|+|+++|++|||+|.+++..++ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~-~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGN-GRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCC-CEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 8999999999999999999999999999999887542 57899999999999999999999999999999999999975
No 88
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.77 E-value=4.9e-19 Score=152.31 Aligned_cols=79 Identities=38% Similarity=0.590 Sum_probs=75.1
Q ss_pred eeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeecC
Q 003305 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (832)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 806 (832)
||||.++|+||++++|+|+++|++|||.|.+++..+ ++.+.|+|.+|++|++||.++||++|+|+|+|+++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~-~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRG-TGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecC-CCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999988655 3589999999999999999999999999999999999999985
No 89
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.76 E-value=9.5e-18 Score=170.26 Aligned_cols=132 Identities=28% Similarity=0.375 Sum_probs=106.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
||+++||+|+|||||+++|+...+ ...+|...+|++||+|+......+.+..... .......+++++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH--LRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEeccccc--ccccccccccCceE
Confidence 899999999999999999976421 2357888899999999999888887752110 00011123447899
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++||||||.+|...+..+++.+|++++|+|+.+|...++...+..+...+.|+++++||+|+.
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 999999999999999999999999999999999998888877776666788999999999986
No 90
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.75 E-value=1.4e-18 Score=149.37 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=73.1
Q ss_pred eeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhh-cCccHHhhhhCCCceeeeeEecceeec
Q 003305 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDMM 805 (832)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~~ 805 (832)
|||++++|.||++++|+|+++|++|||+|++++..++ +.+.|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~-~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDA-NRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCC-CeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 8999999999999999999999999999999986542 37899999999999 699999999999999999999999975
No 91
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.73 E-value=4.9e-17 Score=163.76 Aligned_cols=127 Identities=43% Similarity=0.625 Sum_probs=108.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
||+++|..|+|||||+++|+................++....+..+|+|+......+.+. ...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 64 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP----------------DRRV 64 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC----------------CEEE
Confidence 689999999999999999998876654422222345677778889999988777666664 6789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+||||||+.+|...+..+++.+|++++|+|+.++...+....+..+...+.|+++++||+|+.
T Consensus 65 ~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 65 NFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 999999999999999999999999999999999988888888888888889999999999987
No 92
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.72 E-value=3.6e-17 Score=145.37 Aligned_cols=94 Identities=37% Similarity=0.679 Sum_probs=80.9
Q ss_pred eEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 376 ~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
++|+|||+.++++.|.+++|+|||||+|++||.|++++++++.+..++...++|++||.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 57999999999987666999999999999999999987654433222344589999999999999999999999999999
Q ss_pred ccccccccceeeec
Q 003305 456 GLDQFITKNATLTN 469 (832)
Q Consensus 456 gl~~~~~~tgTl~~ 469 (832)
|+++.+++.+|+++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99999888888864
No 93
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.69 E-value=2.9e-16 Score=154.23 Aligned_cols=115 Identities=32% Similarity=0.365 Sum_probs=92.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|++|+|||||+++|... ..+..+.|..+++|+......+.+. .+..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~-------------~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI-------------ETDRLPEEKKRGITIDLGFAYLDLP---------------SGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc-------------ccccchhhhccCceEEeeeEEEEec---------------CCcEE
Confidence 7999999999999999999422 1233455666788887766555543 15689
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCC-CeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~-p~ilviNKiD~~ 163 (832)
++|||||+.+|...+..+++.+|++++|+|++++...++...+..+...+. |+++++||+|+.
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 999999999999889999999999999999999888888777666555566 888999999986
No 94
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.68 E-value=1.8e-16 Score=137.93 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=73.7
Q ss_pred CCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEE
Q 003305 373 NGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 452 (832)
Q Consensus 373 ~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~ 452 (832)
++||+++|||+.++++.|+ ++|+|||||+|++|+.|++.+ +. .+++.+||.++|.+..++++|.|||||
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~-la~~RV~sG~l~~g~~v~~~~-----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~ 69 (85)
T cd03690 1 ESELSGTVFKIERDDKGER-LAYLRLYSGTLRLRDSVRVNR-----EE-----KIKITELRVFNNGEVVTADTVTAGDIA 69 (85)
T ss_pred CCCcEEEEEEeEECCCCCe-EEEEEEccCEEcCCCEEEeCC-----Cc-----EEEeceeEEEeCCCeEECcEECCCCEE
Confidence 3789999999999999887 999999999999999998532 22 279999999999999999999999999
Q ss_pred EEeccccccccce-eee
Q 003305 453 AMVGLDQFITKNA-TLT 468 (832)
Q Consensus 453 ~i~gl~~~~~~tg-Tl~ 468 (832)
++.|++++ .+| ||+
T Consensus 70 ai~gl~~~--~~Gdtl~ 84 (85)
T cd03690 70 ILTGLKGL--RVGDVLG 84 (85)
T ss_pred EEECCCCC--cCccccC
Confidence 99999987 667 664
No 95
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.67 E-value=1e-14 Score=177.04 Aligned_cols=116 Identities=23% Similarity=0.198 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccc--cCcCCCCceEEEEEeCCCCC
Q 003305 32 KSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY--KGERNGNEYLINLIDSPGHV 109 (832)
Q Consensus 32 KTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~liDTPGh~ 109 (832)
||||+++|-..+- .++...|||.......+.++......... ......+...++|||||||.
T Consensus 474 KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 9999999933321 23345689999988877764211000000 00001112358999999999
Q ss_pred CcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 110 DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 110 df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+|.....++++.+|++++|+|+++|++.||..++..+...++|+++++||+|+.
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 999888889999999999999999999999999999988999999999999985
No 96
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.66 E-value=5.1e-16 Score=143.17 Aligned_cols=75 Identities=8% Similarity=-0.066 Sum_probs=66.9
Q ss_pred CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHHHHHHHhcC
Q 003305 644 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAK 722 (832)
Q Consensus 644 ~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~ 722 (832)
++.|.+.+.|+.+++++.++|++||++|+++||| |+||.||+|+|.|+.+|. ||+..+ |..|+++|+++|+.+|+
T Consensus 40 g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~~~ss~~a---f~~Aa~~a~~~a~~~a~ 115 (115)
T cd01684 40 GLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGRYHSPVSTAAD---FRELTPRVLRQALKKAG 115 (115)
T ss_pred CcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecCCCCCHHH---HHHHHHHHHHHHHHhcC
Confidence 3677788888889999999999999999999999 999999999999999997 666554 55899999999999874
No 97
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.64 E-value=3.2e-16 Score=163.07 Aligned_cols=306 Identities=19% Similarity=0.277 Sum_probs=208.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-eEeecCcccccccCceeeeeeEEEEeeccchhhccccC-------
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG------- 91 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~------- 91 (832)
.+|+++|++|+|||||+..| ..|..++. .|. ...+...++|.|.|.|.....-.+.|+..+|.+++..+
T Consensus 134 ~RVAVVGNVDAGKSTLLGVL--THgeLDnG-RG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVL--THGELDNG-RGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred EEEEEEecccCCcceeEeee--eecccccC-ccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 47999999999999999988 34444432 222 23466788899999988887777777777777766432
Q ss_pred --cCCCCceEEEEEeCCCCCCcHHHHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccc
Q 003305 92 --ERNGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (832)
Q Consensus 92 --~~~~~~~~i~liDTPGh~df~~~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~ 167 (832)
..+..-..|+|||..||+.|...+.-++. .-|..+|+|.+..|+-..|++++..+....+|+.+|++|||..
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC---- 286 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC---- 286 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC----
Confidence 12334568999999999999999988885 6799999999999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceec--ccCccceeeehhhHHHHhhhccCCChHHHHHHhh
Q 003305 168 QVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAF--SAGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 245 (832)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~--~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w 245 (832)
.++ .+++....+...++ +|....+|+ .| .+..
T Consensus 287 PAN------iLqEtmKll~rllk------------S~gcrK~PvlVrs-~DDV--------------------------- 320 (641)
T KOG0463|consen 287 PAN------ILQETMKLLTRLLK------------SPGCRKLPVLVRS-MDDV--------------------------- 320 (641)
T ss_pred cHH------HHHHHHHHHHHHhc------------CCCcccCcEEEec-ccce---------------------------
Confidence 664 45555554444443 232222222 11 0000
Q ss_pred cCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhcc
Q 003305 246 GENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTW 325 (832)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 325 (832)
. ..+..|....+-||+++... +.+.
T Consensus 321 ------------v-------~~A~NF~Ser~CPIFQvSNV--------------------tG~N---------------- 345 (641)
T KOG0463|consen 321 ------------V-------HAAVNFPSERVCPIFQVSNV--------------------TGTN---------------- 345 (641)
T ss_pred ------------E-------EeeccCccccccceEEeccc--------------------cCCC----------------
Confidence 0 01122333334444422221 1111
Q ss_pred ccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeC
Q 003305 326 LPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVST 405 (832)
Q Consensus 326 ~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~ 405 (832)
-+||.++.+.+|.-. ..+.+.|.-..+-.+++.+.+|. ++-+-.++|+++-
T Consensus 346 ----L~LLkmFLNlls~R~------------------------~~~E~~PAeFQIDD~Y~VpGVGT-vvSGT~L~GtIrL 396 (641)
T KOG0463|consen 346 ----LPLLKMFLNLLSLRR------------------------QLNENDPAEFQIDDIYWVPGVGT-VVSGTLLSGTIRL 396 (641)
T ss_pred ----hHHHHHHHhhcCccc------------------------ccccCCCcceeecceEecCCcce-EeecceeeeeEEe
Confidence 246777777775531 11234566678888899999998 8889999999999
Q ss_pred CCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEE--EEeccccccccce-eeecCC
Q 003305 406 GLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV--AMVGLDQFITKNA-TLTNEK 471 (832)
Q Consensus 406 g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~--~i~gl~~~~~~tg-Tl~~~~ 471 (832)
+|.+. +||.. ..++....|+.|. +++-+|..+.+|+-. |+.+++....+-| .+.+++
T Consensus 397 ND~Ll-LGPd~----~G~F~pI~iKSIH----RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 397 NDILL-LGPDS----NGDFMPIPIKSIH----RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred ccEEE-ecCCC----CCCeeeeehhhhh----hccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 99997 45432 1234456666665 578899999999984 5556666555666 666654
No 98
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.62 E-value=1.8e-15 Score=131.46 Aligned_cols=82 Identities=22% Similarity=0.394 Sum_probs=72.3
Q ss_pred eEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 376 ~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
|+|+|||++++++.|+ ++|+|||||+|++||.|++.+. ++ .+++.+||.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~d~~~g~-i~~~Ri~sGtl~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQRGP-LTFVRVYSGTLKRGSALYNTNT----GK-----KERISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCCCe-EEEEEEecCEECCCCEEEECCC----CC-----EEEeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 5799999999999887 9999999999999999997532 22 279999999999999999999999999999
Q ss_pred ccccccccce-eeec
Q 003305 456 GLDQFITKNA-TLTN 469 (832)
Q Consensus 456 gl~~~~~~tg-Tl~~ 469 (832)
|++++ ++| |||.
T Consensus 71 gl~~~--~~Gdtl~~ 83 (83)
T cd04092 71 GLKQT--RTGDTLVT 83 (83)
T ss_pred CCCCc--ccCCEEeC
Confidence 99887 677 8763
No 99
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.60 E-value=6e-15 Score=136.90 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=67.9
Q ss_pred CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcC
Q 003305 644 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 722 (832)
Q Consensus 644 ~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~ 722 (832)
+|.|.+.+.+..++++++++|++||++|+++|||||+||+|++|+|.++.+|.+ +....++++|+++||++||++|+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 40 GVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG--VSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC--CCCHHHHHHHHHHHHHHHHHhcC
Confidence 467777777888999999999999999999999999999999999999999863 23446788999999999999874
No 100
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.60 E-value=1e-14 Score=143.97 Aligned_cols=114 Identities=30% Similarity=0.379 Sum_probs=88.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
.|+++|+.|+|||||+++|....... ...+++|.......+.+. ...+..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~-------------~~~~~~~ 52 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA----------------GEAGGITQHIGAFEVPAE-------------VLKIPGI 52 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc----------------ccCCCeEEeeccEEEecc-------------cCCcceE
Confidence 58999999999999999995432110 112234444333333221 0125789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++|||||+.+|......+++.+|++++|+|++++...++...+..+...++|+++++||+|+.
T Consensus 53 ~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 53 TFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred EEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 999999999998888889999999999999999988888888888888899999999999987
No 101
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.59 E-value=7.3e-15 Score=130.37 Aligned_cols=91 Identities=49% Similarity=0.906 Sum_probs=74.2
Q ss_pred eEEEEEEeeecC-CCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE
Q 003305 376 LMLYVSKMIPAS-DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (832)
Q Consensus 376 ~va~VfK~~~~~-~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i 454 (832)
++++|||+.+++ ..|+ ++|+|||||+|++|+.+++.+++++...++...++++++||.++|.+..++++|+|||||+|
T Consensus 1 ~v~~v~Ki~~~~~~~g~-la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 1 LVMYVTKMVPTPDKGGF-IAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CeEEEEeCeECCCCCEE-EEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 478999999999 5554 99999999999999999987654332111223357999999999999999999999999999
Q ss_pred eccccccccceeeec
Q 003305 455 VGLDQFITKNATLTN 469 (832)
Q Consensus 455 ~gl~~~~~~tgTl~~ 469 (832)
.|++++ .+|+++.
T Consensus 80 ~g~~~~--~~g~~~~ 92 (93)
T cd03700 80 VGLDQL--KSGTTAT 92 (93)
T ss_pred ECCccC--ceEeEec
Confidence 999886 6776553
No 102
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.59 E-value=4.5e-15 Score=128.95 Aligned_cols=80 Identities=29% Similarity=0.459 Sum_probs=70.9
Q ss_pred EEEEEeee---cCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE
Q 003305 378 LYVSKMIP---ASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (832)
Q Consensus 378 a~VfK~~~---~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i 454 (832)
|+|||+.+ +++.|+ ++|+|||||+|++||.|++.. .++ .+++++||.++|.+..++++|.||||+++
T Consensus 1 ~~vfKv~~~~~~~~~Gk-la~~Rv~sG~l~~g~~v~~~~----~~~-----~~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDR-IAFVRVCSGKFERGMKVKHVR----LGK-----EVRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcE-EEEEEEECCEEcCCCEEEEcC----CCC-----EEEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 58999999 999888 999999999999999999642 222 27999999999999999999999999999
Q ss_pred eccccccccce-eeec
Q 003305 455 VGLDQFITKNA-TLTN 469 (832)
Q Consensus 455 ~gl~~~~~~tg-Tl~~ 469 (832)
.|++++ .+| |||+
T Consensus 71 ~gl~~~--~~Gdtl~~ 84 (85)
T cd03689 71 VNPGNF--QIGDTLTE 84 (85)
T ss_pred ECCCCc--cccCEeeC
Confidence 999987 677 8875
No 103
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.58 E-value=1.3e-14 Score=158.29 Aligned_cols=115 Identities=24% Similarity=0.329 Sum_probs=100.0
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
....|||+|.+|+|||||+|+|+.....+....+| +|.++-...+.|+ +
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aG---------------TTRD~I~~~~e~~----------------~ 225 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG---------------TTRDSIDIEFERD----------------G 225 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCC---------------ccccceeeeEEEC----------------C
Confidence 35799999999999999999998888777766565 5777777777775 7
Q ss_pred eEEEEEeCCCCCC----------c-HHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVD----------F-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~d----------f-~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.+|||.|... | ...+..++..||.++||+||++|+..|...+..++...+.++++++||||+.
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~ 302 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV 302 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 8999999999642 2 2357889999999999999999999999999999999999999999999987
No 104
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=2.1e-14 Score=164.58 Aligned_cols=115 Identities=25% Similarity=0.300 Sum_probs=91.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|++|+|||||+++|++....+... ..|+|.......+.+. +
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~ 220 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD---------------IAGTTRDSIDTPFERD----------------G 220 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCceEEEEEEEEEEC----------------C
Confidence 35799999999999999999997655433221 2356666655555553 6
Q ss_pred eEEEEEeCCCCCCcH-----------HHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~-----------~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+++|||||+.+.. ..+.++++.+|++|+|+|+++|...++..++.++...+.|+++++||+|+.
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 789999999975421 235568899999999999999999999999999999999999999999976
No 105
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.57 E-value=9.5e-15 Score=126.92 Aligned_cols=81 Identities=32% Similarity=0.434 Sum_probs=71.8
Q ss_pred eEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 376 ~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
++|+|||+.++++.|+ ++|+|||||+|++||.|++++. +. .+++.+|+.++|.+..++++++|||||++.
T Consensus 1 ~~a~Vfk~~~d~~~G~-~~~~Rv~sG~l~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVGK-LSFVRVYSGTLKAGSTLYNSTK----GK-----KERVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCce-EEEEEEecCEEcCCCEEEECCC----Cc-----EEEeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 5799999999999887 9999999999999999997642 22 279999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003305 456 GLDQFITKNA-TLT 468 (832)
Q Consensus 456 gl~~~~~~tg-Tl~ 468 (832)
|++++ .+| ||+
T Consensus 71 g~~~~--~~Gdtl~ 82 (83)
T cd04088 71 GLKDT--ATGDTLC 82 (83)
T ss_pred CCCCC--ccCCEee
Confidence 99986 677 765
No 106
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.56 E-value=1.4e-14 Score=125.07 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=69.4
Q ss_pred eEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 376 ~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
|+|+|||+.+++. |+ ++|+|||||+|++||.|+++. .++ .+++.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~-G~-i~~~Rv~sG~lk~gd~v~~~~----~~~-----~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF-GQ-LTYMRIYQGKLKKGDTIYNVR----TGK-----KVRVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC-CC-EEEEEEecCEEcCCCEEEEcC----CCC-----EEEEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 5799999999987 87 999999999999999999753 222 279999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003305 456 GLDQFITKNA-TLT 468 (832)
Q Consensus 456 gl~~~~~~tg-Tl~ 468 (832)
|++ + ++| ||+
T Consensus 70 g~~-~--~~Gdtl~ 80 (81)
T cd04091 70 GID-C--ASGDTFT 80 (81)
T ss_pred CCC-c--ccCCEec
Confidence 997 5 677 875
No 107
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.4e-14 Score=162.22 Aligned_cols=129 Identities=25% Similarity=0.316 Sum_probs=96.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccc--cCcCCCCc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY--KGERNGNE 97 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 97 (832)
.-+||+||+|+|||-|++.+-..+-.-. .+| |||.......|...+........ +.....+-
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqeg--eag--------------gitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kv 539 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEG--EAG--------------GITQQIGATYFPAENIREKTKELKKDAKKRLKV 539 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccc--ccc--------------ceeeeccccccchHHHHHHHHHHHhhhhhhcCC
Confidence 3579999999999999999944322111 133 67766665544332111000001 11111233
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCccc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~ 164 (832)
-.+.+||||||+.|.....++...||.||||||..+|+.+||.+.+..++..+.|.||++||+||++
T Consensus 540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred CeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc
Confidence 4688999999999999999999999999999999999999999999999999999999999999974
No 108
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.55 E-value=4.2e-14 Score=161.81 Aligned_cols=114 Identities=26% Similarity=0.294 Sum_probs=90.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|++|+|||||+++|+.....+... ..|+|.......+.+. +.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~~ 220 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSD---------------IAGTTRDSIDIPFERN----------------GK 220 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCC---------------CCCceECcEeEEEEEC----------------Cc
Confidence 4689999999999999999997654332221 2345665554555553 56
Q ss_pred EEEEEeCCCCCCcHH-----------HHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSS-----------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~-----------~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.++.. .+..+++.+|++|+|+|+++|.+.++..+++++...+.|+++|+||+|+.
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 899999999865431 24567899999999999999999999999999988999999999999986
No 109
>COG1159 Era GTPase [General function prediction only]
Probab=99.54 E-value=4.1e-14 Score=146.62 Aligned_cols=114 Identities=27% Similarity=0.294 Sum_probs=88.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.--|||+|.+|+|||||+|+|++..-.|....+.. |.. ........ ++.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QT---------------TR~-~I~GI~t~---------------~~~ 54 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQT---------------TRN-RIRGIVTT---------------DNA 54 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcch---------------hhh-heeEEEEc---------------CCc
Confidence 34689999999999999999988766655543331 111 11111111 378
Q ss_pred EEEEEeCCCCCC--------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~d--------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++.|+||||... +...+..++..+|.+++|||+.++.....+.++......+.|+++++||+|+.
T Consensus 55 QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~ 127 (298)
T COG1159 55 QIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKV 127 (298)
T ss_pred eEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccC
Confidence 999999999653 44567789999999999999999999999999998888778999999999987
No 110
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.53 E-value=3.6e-14 Score=154.88 Aligned_cols=113 Identities=25% Similarity=0.251 Sum_probs=96.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+.|+|+|.+|+|||||.|+|+...-++....+| +|.+..+....|. ++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pG---------------vTRDr~y~~~~~~----------------~~~ 52 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPG---------------VTRDRIYGDAEWL----------------GRE 52 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCC---------------CccCCccceeEEc----------------Cce
Confidence 579999999999999999997776666554444 5666666777786 788
Q ss_pred EEEEeCCCCCCcH---------HHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFS---------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~---------~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+.+|||+|..+.. .++..|+..||++|||||+.+|++++.+.+.+.+...++|+|+|+||+|..
T Consensus 53 f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 53 FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 9999999987422 357889999999999999999999999999999998889999999999965
No 111
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.51 E-value=3.1e-13 Score=133.63 Aligned_cols=114 Identities=26% Similarity=0.330 Sum_probs=84.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|++|+|||||+++|+.....+.. ..++.|.......+.+. +.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----------------~~ 50 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS---------------DIAGTTRDSIDVPFEYD----------------GK 50 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc---------------CCCCCccCceeeEEEEC----------------Ce
Confidence 468999999999999999999654322211 11233443333333332 56
Q ss_pred EEEEEeCCCCCCcH-----------HHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~-----------~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+++|||||+.++. .....+++.+|++++|+|+..+...+...+++++...+.|+++++||+|+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 51 KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 78999999986542 123456789999999999999988888888888877889999999999987
No 112
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.51 E-value=4.3e-14 Score=131.00 Aligned_cols=83 Identities=22% Similarity=0.143 Sum_probs=71.1
Q ss_pred eccCCC-CCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHH
Q 003305 637 FGPETT-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVI 714 (832)
Q Consensus 637 ~~P~~~-g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~ 714 (832)
++|... .+|.|.+++.|..++++++++|.+||++|+++||++|+||+|++|+|.++.+|. |+. ...|+.|+++|+
T Consensus 32 v~P~~~g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~~aa~~a~ 108 (116)
T cd01434 32 IEPLPRGSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDSS---EMAFKIAARMAF 108 (116)
T ss_pred EEECCCCCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecCCCC---HHHHHHHHHHHH
Confidence 455322 357788888888999999999999999999999999999999999999999997 554 345779999999
Q ss_pred HHHHHhcC
Q 003305 715 YASQLTAK 722 (832)
Q Consensus 715 ~~al~~a~ 722 (832)
++|+.+|+
T Consensus 109 ~~al~~a~ 116 (116)
T cd01434 109 KEAFKKAK 116 (116)
T ss_pred HHHHHhcC
Confidence 99999874
No 113
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.51 E-value=9.4e-14 Score=135.21 Aligned_cols=110 Identities=25% Similarity=0.258 Sum_probs=82.6
Q ss_pred EEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEEE
Q 003305 23 SVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINL 102 (832)
Q Consensus 23 ~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 102 (832)
+++|+.|+|||||+++|+........ ...++|.........+. ++.+++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~~~~i 49 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE---------------DTPGVTRDRIYGEAEWG----------------GREFIL 49 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec---------------CCCCceeCceeEEEEEC----------------CeEEEE
Confidence 58999999999999999643211111 11233433333333333 678999
Q ss_pred EeCCCCCCcHH--------HHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 103 IDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 103 iDTPGh~df~~--------~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
|||||+.++.. ++...++.+|++++|+|+.++.......+++++...+.|+++++||+|+.
T Consensus 50 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 118 (157)
T cd01894 50 IDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred EECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccC
Confidence 99999998644 55678899999999999999887777777788878889999999999987
No 114
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.51 E-value=7.9e-14 Score=122.01 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=72.1
Q ss_pred eEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 376 ~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
|.++|||+..+++.|+ ++|+|||||+|++||.|++..++ . +...+++.+|+.++|.+..++++++|||||++.
T Consensus 1 ~~~~vfk~~~d~~~g~-i~~~Rv~sG~l~~g~~v~~~~~~----~--~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGR-IAIGRIFRGTVKVGQQVAVVKRD----G--KIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCCe-EEEEEEEeCEEcCCCEEEEEcCC----C--CEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 4689999999999887 99999999999999999976532 1 112368999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003305 456 GLDQFITKNA-TLT 468 (832)
Q Consensus 456 gl~~~~~~tg-Tl~ 468 (832)
|++++ .+| ||+
T Consensus 74 gl~~~--~~Gdtl~ 85 (86)
T cd03691 74 GIEDI--TIGDTIC 85 (86)
T ss_pred CCCCC--cccceec
Confidence 99887 566 765
No 115
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.50 E-value=1.4e-13 Score=136.02 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=79.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
||+++|+.|+|||||+++|....... .+. ...+ ...|+......+.++ +..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~----~~~------~~~~--~~~t~~~~~~~~~~~----------------~~~~ 52 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY----KGL------PPSK--ITPTVGLNIGTIEVG----------------NARL 52 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc----cCC------cccc--cCCccccceEEEEEC----------------CEEE
Confidence 68999999999999999996643210 110 0111 112333333444453 6899
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchh-HHHHHHHHH----cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~q-t~~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
++|||||+.+|...+...++.+|++++|+|+.+.-... ....+..+. ..++|+++++||+|+.
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 53 KFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred EEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 99999999999998999999999999999998743222 122222222 3478999999999986
No 116
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.6e-14 Score=142.63 Aligned_cols=134 Identities=27% Similarity=0.331 Sum_probs=103.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhc-------cc
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALK-------SY 89 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~-------~~ 89 (832)
+...||+.+||+.|||||++.++ .|- .+-.++.|-||.|||+..++....-..++.-+ ++
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAi-----------SGv--~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAI-----------SGV--HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeeeecceeccccCcceeeeee-----------ccc--eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 34679999999999999999988 552 33446778899999999888776543332211 11
Q ss_pred cCcC-----------CCC---ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-cchhHHHHHHHHHcCCCCeE
Q 003305 90 KGER-----------NGN---EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIRPV 154 (832)
Q Consensus 90 ~~~~-----------~~~---~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-~~~qt~~~~~~~~~~~~p~i 154 (832)
.++. .++ -.++.|+|||||.-++..|.++...+|+|+|+|.+.+. .++||.+++....-++++.|
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 1111 111 24789999999999999999999999999999999874 78999999988888887755
Q ss_pred -EEEECCCcc
Q 003305 155 -LTVNKMDRC 163 (832)
Q Consensus 155 -lviNKiD~~ 163 (832)
++.||+|+.
T Consensus 183 iilQNKiDli 192 (466)
T KOG0466|consen 183 IILQNKIDLI 192 (466)
T ss_pred EEEechhhhh
Confidence 689999987
No 117
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=1e-12 Score=151.47 Aligned_cols=115 Identities=21% Similarity=0.312 Sum_probs=87.4
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
..++|+++|++|+|||||+++|+.....+... ..|+|.+.....+.+. +
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~---------------~~gtT~d~~~~~~~~~----------------~ 258 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDD---------------VAGTTVDPVDSLIELG----------------G 258 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC---------------CCCccCCcceEEEEEC----------------C
Confidence 46899999999999999999996544322221 2244554443444443 6
Q ss_pred eEEEEEeCCCCC---------CcHHH--HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~---------df~~~--~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+.||||||.. ++... ...+++.+|++|+|+|++++.+.+...++..+...++|+|+|+||+|+.
T Consensus 259 ~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 259 KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred EEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 678999999963 23222 2356789999999999999999999888888888899999999999987
No 118
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=3.1e-13 Score=129.94 Aligned_cols=131 Identities=22% Similarity=0.252 Sum_probs=100.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.-+|+|+|+.++||||+++++......+...... .+.... .|..|+.....++.+. .++
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~----~~s~k~--kr~tTva~D~g~~~~~---------------~~~ 68 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS----SVSGKG--KRPTTVAMDFGSIELD---------------EDT 68 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccc----cccccc--ccceeEeecccceEEc---------------Ccc
Confidence 3589999999999999999998876544331110 011110 4456777666666654 258
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCC-CCeEEEEECCCcccccccCC-HHHH
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRCFLELQVD-GEEA 174 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~-~p~ilviNKiD~~~~~~~~~-~~~~ 174 (832)
.++|.|||||.+|...+...++.++|+|++||++.+.....+.+++...... +|.+|++||.|+. .+. ++++
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~----~a~ppe~i 142 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF----DALPPEKI 142 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC----CCCCHHHH
Confidence 9999999999999999999999999999999999998887777777777666 8999999999998 664 4443
No 119
>PRK15494 era GTPase Era; Provisional
Probab=99.48 E-value=4e-13 Score=147.89 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=82.0
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|++|+|||||+++|+.....+..... +.|.......+.++ +
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~---------------~tTr~~~~~~~~~~----------------~ 99 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKV---------------QTTRSIITGIITLK----------------D 99 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCC---------------CCccCcEEEEEEeC----------------C
Confidence 3459999999999999999999654322211111 12322222223333 6
Q ss_pred eEEEEEeCCCCCCc--------HHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df--------~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+++||||||..+. ......+++.+|++++|+|+.++....+..++..+...+.|+++|+||+|+.
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 78999999998542 2223456789999999999998887777777777777788999999999986
No 120
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.45 E-value=3.2e-13 Score=117.98 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=67.2
Q ss_pred eEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 376 ~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
|.|+|||+.++++.|+ ++|+|||||+|++||.+++.. .++ .+++++|+. ++.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~-i~~~Rv~sG~l~~~~~v~~~~----~~~-----~~~i~~l~~-~~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGV-IALVRVFDGTLKKGDKIRFMS----TGK-----EYEVEEVGI-FRPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCE-EEEEEEEcCEEcCCCEEEEec----CCC-----eEEEEEEEE-ECCCccCCceECCCCEEEEE
Confidence 5799999999999887 999999999999999999653 222 279999995 48888999999999999996
Q ss_pred -c---cccccccce-eeec
Q 003305 456 -G---LDQFITKNA-TLTN 469 (832)
Q Consensus 456 -g---l~~~~~~tg-Tl~~ 469 (832)
| ++++ .+| ||++
T Consensus 70 ~g~~~l~~~--~~Gdtl~~ 86 (86)
T cd03699 70 AGIKTVKDA--RVGDTITL 86 (86)
T ss_pred ccccccCcc--ccccEeeC
Confidence 4 5655 567 8763
No 121
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.44 E-value=2.6e-13 Score=126.63 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=57.0
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcC
Q 003305 653 GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 722 (832)
Q Consensus 653 g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~ 722 (832)
+..++++++++|++|+++|+++|||+|+||+|++|+|+++.+|...+. ..++.|++.|+++||.+|+
T Consensus 54 ~~~~p~~~~~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~Aa~~a~~~al~~a~ 120 (120)
T cd01693 54 IEVLLKRIQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPGTSP---TMISACASQCVQKALKSAG 120 (120)
T ss_pred CCcChHHHHHHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCCCCCH---HHHHHHHHHHHHHHHHhcc
Confidence 556889999999999999999999999999999999999999963211 2234789999999999874
No 122
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=5.7e-13 Score=131.50 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=80.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
..++|+++|+.|+|||||+++|+... ... +....++.......+.+. +..
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~--------------~~~ 51 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGT--FSE--------------RQGNTIGVDFTMKTLEIE--------------GKR 51 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--Ccc--------------cCCCccceEEEEEEEEEC--------------CEE
Confidence 35899999999999999999995421 110 000111122222233332 224
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
..++|+||||+.+|.......++.+|++++|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 6889999999999999889999999999999999987655554334 2222 3467899999999986
No 123
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.44 E-value=3.6e-13 Score=130.04 Aligned_cols=109 Identities=27% Similarity=0.329 Sum_probs=79.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|.+|+|||||+|+|.+..-.+ .+ . .|.|+......+.+. +..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v----------~n-~-----pG~Tv~~~~g~~~~~----------------~~~~ 49 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKV----------GN-W-----PGTTVEKKEGIFKLG----------------DQQV 49 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEE----------EE-S-----TTSSSEEEEEEEEET----------------TEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcee----------cC-C-----CCCCeeeeeEEEEec----------------CceE
Confidence 69999999999999999995544222 11 1 267888777777775 7899
Q ss_pred EEEeCCCCCCcH----HH--HHHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFS----SE--VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~----~~--~~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.|+||||.-++. .| +..++ ...|++|+|+||+. ..+...+..++.+.++|+++++||+|+.
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 999999965432 12 23333 57899999999986 3445566778889999999999999976
No 124
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=6.3e-13 Score=153.26 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=90.3
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
...+.+|+|+|.+|+|||||+++|+.....+... ..|+|.+.......|.
T Consensus 35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~---------------~~gvT~d~~~~~~~~~--------------- 84 (472)
T PRK03003 35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVED---------------VPGVTRDRVSYDAEWN--------------- 84 (472)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccC---------------CCCCCEeeEEEEEEEC---------------
Confidence 3457899999999999999999996543222111 2245555444444554
Q ss_pred CceEEEEEeCCCCCC--------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~d--------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+..++||||||+.. +...+..+++.||++|+|+|++++.+.....++..+...++|+++|+||+|+.
T Consensus 85 -~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 85 -GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred -CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 67899999999863 44456778999999999999999988877777788888899999999999986
No 125
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.44 E-value=4.1e-13 Score=153.67 Aligned_cols=112 Identities=23% Similarity=0.261 Sum_probs=89.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
.|+++|++|+|||||+++|+.....+... ..|+|.+.......|. +..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~---------------~~g~t~d~~~~~~~~~----------------~~~~ 49 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSD---------------TPGVTRDRKYGDAEWG----------------GREF 49 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecC---------------CCCcccCceEEEEEEC----------------CeEE
Confidence 48999999999999999996554332221 1245555555556665 6789
Q ss_pred EEEeCCCCCC--------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~d--------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++|||||+.. +...+..+++.+|++++|+|+.+|.......+++.+.+.++|+++|+||+|+.
T Consensus 50 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~ 120 (429)
T TIGR03594 50 ILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCC
Confidence 9999999843 44567788999999999999999999999888888888899999999999986
No 126
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.43 E-value=1.3e-12 Score=139.83 Aligned_cols=111 Identities=27% Similarity=0.216 Sum_probs=77.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
.|+++|++|+|||||+|+|++....+.....+ +|..... ..... .+.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~---------------TTr~~i~-~i~~~---------------~~~qi 50 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQ---------------TTRNRIS-GIHTT---------------GASQI 50 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCC---------------cccCcEE-EEEEc---------------CCcEE
Confidence 58999999999999999997654322221122 1221111 11111 25679
Q ss_pred EEEeCCCCCCc--------HHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df--------~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.|+||||+.+. ...+..+++.+|++++|+|++++.... ..++..+...+.|+++|+||+|+.
T Consensus 51 i~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 51 IFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred EEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 99999998653 233567789999999999999876554 556666677789999999999976
No 127
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.43 E-value=2.3e-12 Score=129.25 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=79.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+|+|+.|+|||||+++|+...... . +.+ ..|.|..... +.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~-~-------~~~------~~~~t~~~~~--~~~----------------- 62 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLA-R-------TSK------TPGRTQLINF--FEV----------------- 62 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-c-------ccC------CCCcceEEEE--EEe-----------------
Confidence 566799999999999999999996542110 0 000 1123332221 111
Q ss_pred ceEEEEEeCCCCCC----------cHHHHHHHhh---ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVD----------FSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~d----------f~~~~~~~l~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+..+.+|||||+.+ |...+...++ .+|++++|+|+..+...++..+++.+...++|+++++||+|+.
T Consensus 63 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 63 NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKL 142 (179)
T ss_pred CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 12689999999642 3333333444 4689999999999999898888888888899999999999976
No 128
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.42 E-value=5.7e-12 Score=151.40 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=81.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|++|+|||||+|+|...... .| + ..|.|++.....+.+. ++.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~-----vg-----n------~pGvTve~k~g~~~~~----------------~~~ 51 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQR-----VG-----N------WAGVTVERKEGQFSTT----------------DHQ 51 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCc-----cC-----C------CCCceEeeEEEEEEcC----------------ceE
Confidence 58999999999999999999432211 11 1 1366777666666654 789
Q ss_pred EEEEeCCCCCCcHHH--------H--HHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSE--------V--TAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~--------~--~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++++||||+.+|... . ...+ ..+|++++|+|+++... ...++.++.+.++|+++++||+|+.
T Consensus 52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhh
Confidence 999999999887531 1 1222 37899999999998543 3345677788899999999999976
No 129
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.2e-13 Score=139.44 Aligned_cols=158 Identities=22% Similarity=0.253 Sum_probs=124.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceE-eecCcccccccCceeeeeeEEEEeeccchhhccccC-----cC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG-----ER 93 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~-~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~-----~~ 93 (832)
.+++++|..|+|||||+..| ..|..++. .|+.+ -+..+++|.+.|-|...+.-.+.|+..++.+++..+ ..
T Consensus 168 vRvAVlGg~D~GKSTLlGVL--TQgeLDnG-~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVL--TQGELDNG-NGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEecCcccCcceeeeee--ecccccCC-CCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 57899999999999999988 45555543 34433 467789999999998888877778766655553322 23
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhc--cCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCH
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRI--TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~--~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~ 171 (832)
+..+..++|||..||..|...++.++.. -|.|+|||+|..|+...|++++..+...++|..++++|||+. ..
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~----~~-- 318 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLV----DR-- 318 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccc----cc--
Confidence 4457799999999999999999998864 599999999999999999999999999999999999999987 32
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 003305 172 EEAYQTFSRVVENANVIMA 190 (832)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~ 190 (832)
.-+++++.++...+.
T Consensus 319 ----~~~~~tv~~l~nll~ 333 (591)
T KOG1143|consen 319 ----QGLKKTVKDLSNLLA 333 (591)
T ss_pred ----hhHHHHHHHHHHHHh
Confidence 134555555544443
No 130
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.41 E-value=1.1e-12 Score=150.52 Aligned_cols=113 Identities=23% Similarity=0.231 Sum_probs=87.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|++|+|||||+++|+.....+... ..|+|.......+.|. +..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~---------------~~~~t~d~~~~~~~~~----------------~~~ 50 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD---------------TPGVTRDRIYGEAEWL----------------GRE 50 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC---------------CCCCcccceEEEEEEC----------------CcE
Confidence 579999999999999999996543322211 1234554444445554 678
Q ss_pred EEEEeCCCCCC--------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~d--------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+++|||||+.+ +...+..+++.+|++|+|+|+.++.......+...+...+.|+++++||+|..
T Consensus 51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 99999999988 33445678899999999999999988888888788888899999999999965
No 131
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=1.4e-12 Score=157.37 Aligned_cols=115 Identities=22% Similarity=0.276 Sum_probs=88.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
..++|+++|++|+|||||+++|+.....+.... .|+|.+.....+.+. +
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~---------------~gtT~d~~~~~~~~~----------------~ 497 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDL---------------AGTTRDPVDEIVEID----------------G 497 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCC---------------CCCCcCcceeEEEEC----------------C
Confidence 458999999999999999999976543222211 234554444444554 5
Q ss_pred eEEEEEeCCCCC---------CcHHH--HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~---------df~~~--~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+.||||||+. +|... ...+++.+|++++|+|++++.+.++..++..+...++|+++|+||+|+.
T Consensus 498 ~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 498 EDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred CEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 678899999964 23222 3456789999999999999999999999988888899999999999986
No 132
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.39 E-value=2e-12 Score=125.64 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=78.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|++|+|||||+++|.......... ..++|.......+.+. +..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----------------~~~~ 51 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSD---------------IAGTTRDVIEESIDIG----------------GIPV 51 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccC---------------CCCCccceEEEEEEeC----------------CEEE
Confidence 78999999999999999996543221111 1234444333344443 5789
Q ss_pred EEEeCCCCCCcHHH--------HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~--------~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+++||||+.++... +...+..+|++++|+|+...........+.. ..+.|+++++||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcC
Confidence 99999999877432 4457789999999999998666555555444 5678999999999987
No 133
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.39 E-value=2.1e-12 Score=127.78 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=81.9
Q ss_pred cccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceee--eeeEEEEeeccchhhccccC
Q 003305 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK--STGISLYYEMTDDALKSYKG 91 (832)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~ 91 (832)
.+....++|+++|+.|+|||||+++|.... ... ..+.|+. .....+.+.
T Consensus 2 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~----------- 52 (169)
T cd04114 2 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGL--FPP----------------GQGATIGVDFMIKTVEIK----------- 52 (169)
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHhCC--CCC----------------CCCCceeeEEEEEEEEEC-----------
Confidence 333456899999999999999999995321 110 0112222 222223332
Q ss_pred cCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH----HHHHcCCCCeEEEEECCCcc
Q 003305 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~----~~~~~~~~p~ilviNKiD~~ 163 (832)
+....+.++||||+.+|.......++.+|++++|+|+.++...+....| +.....++|.++++||+|+.
T Consensus 53 ---~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 53 ---GEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred ---CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 2246788999999999999999999999999999999886554433333 23334468889999999976
No 134
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.39 E-value=4.5e-12 Score=129.72 Aligned_cols=131 Identities=18% Similarity=0.280 Sum_probs=83.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
++|+++|+.|+|||||+.+|..... .. +++ ++......+... ...++..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~------~~--t~~-----------s~~~~~~~~~~~------------~~~~~~~ 49 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY------RS--TVT-----------SIEPNVATFILN------------SEGKGKK 49 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC------CC--ccC-----------cEeecceEEEee------------cCCCCce
Confidence 4799999999999999999954321 01 000 111111111111 0123568
Q ss_pred EEEEeCCCCCCcHHHHHHHhhcc-CcEEEEEcCCCccc--hhHHHHH----HHHH--cCCCCeEEEEECCCcccccccCC
Q 003305 100 INLIDSPGHVDFSSEVTAALRIT-DGALVVVDCIEGVC--VQTETVL----RQAL--GERIRPVLTVNKMDRCFLELQVD 170 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~-D~ailVvda~~g~~--~qt~~~~----~~~~--~~~~p~ilviNKiD~~~~~~~~~ 170 (832)
+.+||||||.+|.......++.+ +++|+|+|++.... ..+...| .... ..++|+++++||+|+. .+.
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~----~a~ 125 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF----TAK 125 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc----ccC
Confidence 99999999999999999999998 99999999998631 1111222 1111 2478999999999987 543
Q ss_pred -HHHHHHHHHHHHHHh
Q 003305 171 -GEEAYQTFSRVVENA 185 (832)
Q Consensus 171 -~~~~~~~~~~~~~~~ 185 (832)
.+.+.+.+++-+..+
T Consensus 126 ~~~~i~~~le~ei~~~ 141 (203)
T cd04105 126 PAKKIKEQLEKELNTL 141 (203)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 344455555444433
No 135
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.38 E-value=4e-12 Score=126.57 Aligned_cols=113 Identities=20% Similarity=0.223 Sum_probs=77.6
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
.....+|+++|+.|+|||||+++|.... . .. .+. |+......+.+.
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~--~----------~~---~~~----t~g~~~~~~~~~--------------- 56 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGED--I----------DT---ISP----TLGFQIKTLEYE--------------- 56 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCC--C----------CC---cCC----ccccceEEEEEC---------------
Confidence 3445789999999999999999995431 0 00 011 111111223332
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHH----HcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA----LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~----~~~~~p~ilviNKiD~~ 163 (832)
+..+++|||||+..|...+...++.+|++++|+|+++.-.... ...+... ...+.|+++++||+|+.
T Consensus 57 -~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 57 -GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred -CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 6789999999999998888889999999999999988633222 1112221 23578999999999986
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.38 E-value=4.8e-12 Score=125.25 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=71.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce-E
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY-L 99 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 99 (832)
||+++|++|+|||||+++|......+.. .. +.|.......+.+. ++ .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~-~~---------------~~t~~~~~~~~~~~----------------~~~~ 49 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD-YP---------------FTTLVPNLGVVRVD----------------DGRS 49 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC-CC---------------ccccCCcceEEEcC----------------CCCe
Confidence 7999999999999999999543221110 01 12322222223332 34 8
Q ss_pred EEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCc-cchhHHHHH-HHHHc-----CCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG-VCVQTETVL-RQALG-----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g-~~~qt~~~~-~~~~~-----~~~p~ilviNKiD~~ 163 (832)
++|+||||+.+ +.....+.++.+|++++|+|++++ -..+....| ..+.. .+.|+++|+||+|+.
T Consensus 50 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 50 FVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred EEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 99999999742 344555667789999999999986 333332222 22222 368899999999986
No 137
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.38 E-value=4.4e-12 Score=124.80 Aligned_cols=113 Identities=15% Similarity=0.237 Sum_probs=78.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|+.|+|||||+++++...-.... ....+.++......+ +++...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~----------------~~~~~~~ 51 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQ--------------LSTYALTLYKHNAKF----------------EGKTILV 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc--------------CCceeeEEEEEEEEE----------------CCEEEEE
Confidence 6899999999999999999643210000 000111211111111 2236789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc--CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
++|||||+..|.......++.+|++|+|+|+++....+....| ..+.+ .++|+++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 9999999999999999999999999999999987665554333 33333 368999999999975
No 138
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.37 E-value=3.3e-12 Score=129.19 Aligned_cols=123 Identities=19% Similarity=0.145 Sum_probs=84.4
Q ss_pred HHHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchh
Q 003305 6 AEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (832)
Q Consensus 6 ~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (832)
...+.+.|+...+..+|+++|+.|+|||||+++|.... ... + ..|+......+.+.
T Consensus 6 ~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~--~~~-------~----------~~T~~~~~~~i~~~----- 61 (190)
T cd00879 6 FYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDR--LAQ-------H----------VPTLHPTSEELTIG----- 61 (190)
T ss_pred HHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCC--Ccc-------c----------CCccCcceEEEEEC-----
Confidence 34455566666667899999999999999999994321 100 0 01222222334443
Q ss_pred hccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchh-HHHHHHHHH----cCCCCeEEEEECC
Q 003305 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKM 160 (832)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~q-t~~~~~~~~----~~~~p~ilviNKi 160 (832)
+..++++||||+.+|.......++.+|++++|+|+++.-... ....+.... ..+.|+++++||+
T Consensus 62 -----------~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~ 130 (190)
T cd00879 62 -----------NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKI 130 (190)
T ss_pred -----------CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCC
Confidence 578999999999999888888899999999999998743222 122222222 3568999999999
Q ss_pred Ccc
Q 003305 161 DRC 163 (832)
Q Consensus 161 D~~ 163 (832)
|+.
T Consensus 131 Dl~ 133 (190)
T cd00879 131 DLP 133 (190)
T ss_pred CCC
Confidence 986
No 139
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.37 E-value=2.4e-12 Score=126.33 Aligned_cols=99 Identities=19% Similarity=0.296 Sum_probs=71.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
++|+++|++|+|||||+++|. |.... + .......|. ..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~-----------~~~~~------------~--~~~~~v~~~----------------~~- 39 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ-----------GNYTL------------A--RKTQAVEFN----------------DK- 39 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc-----------CCCcc------------C--ccceEEEEC----------------CC-
Confidence 589999999999999999983 31100 0 011222333 11
Q ss_pred EEEEeCCCC----CCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGH----VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh----~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++|||||. .++..++..+++.+|++++|+|++++.+..+..++.. ..+.|+++++||+|+.
T Consensus 40 -~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 40 -GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMP 104 (158)
T ss_pred -CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccC
Confidence 36999996 4677777888999999999999998876555444432 3467889999999987
No 140
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.37 E-value=5e-12 Score=123.95 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=75.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++|........ .+. ..-|.++ ..+.+ ++..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-------~~~------~t~g~~~----~~~~~----------------~~~~~ 47 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-------IIV------PTVGFNV----ESFEK----------------GNLSF 47 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-------eec------Cccccce----EEEEE----------------CCEEE
Confidence 589999999999999999954311000 000 0111111 12223 26789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHHH------cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL------GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~~------~~~~p~ilviNKiD~~ 163 (832)
+++||||+.+|...+...++.+|++|+|+|+++...... ...+..+. ..++|+++++||+|+.
T Consensus 48 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 48 TAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred EEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 999999999999999999999999999999998654321 11122221 2468999999999987
No 141
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.37 E-value=5.3e-12 Score=127.19 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=81.9
Q ss_pred HHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhcc
Q 003305 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKS 88 (832)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (832)
+..++....+-.+|+++|..|+|||||+++|....-. ...+ |.......+.+.
T Consensus 7 ~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~------------~~~~-------t~~~~~~~~~~~-------- 59 (184)
T smart00178 7 ILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLA------------QHQP-------TQHPTSEELAIG-------- 59 (184)
T ss_pred HHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCc------------ccCC-------ccccceEEEEEC--------
Confidence 4445555455579999999999999999999542100 0000 111111223333
Q ss_pred ccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHHH----cCCCCeEEEEECCCcc
Q 003305 89 YKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
+..++++||||+..+......+++.+|++|+|+|+++...... ...+.... ..+.|+++++||+|+.
T Consensus 60 --------~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 60 --------NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 6789999999999998888899999999999999987532222 22222222 2578999999999986
No 142
>PRK00089 era GTPase Era; Reviewed
Probab=99.37 E-value=7.6e-12 Score=135.64 Aligned_cols=115 Identities=23% Similarity=0.245 Sum_probs=81.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+-..|+++|++|+|||||+++|++....+.....+ .|... ....... .+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~---------------tt~~~-i~~i~~~---------------~~ 52 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRHR-IRGIVTE---------------DD 52 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCC---------------ccccc-EEEEEEc---------------CC
Confidence 34579999999999999999997543322211111 11110 0111111 24
Q ss_pred eEEEEEeCCCCCCc--------HHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df--------~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+.++||||+.+. ...+..++..+|++++|+|+.++.......++..+...+.|+++++||+|+.
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 78999999998653 3345667889999999999999777777777777776788999999999986
No 143
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.37 E-value=3.5e-12 Score=124.75 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=76.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|+.|+|||||+++++.... .. .-.|+......+.+. ...+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~-----------------~~~t~~~~~~~~~~~----------------~~~~ 45 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VT-----------------TIPTIGFNVETVEYK----------------NVSF 45 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CC-----------------CCCCcCcceEEEEEC----------------CEEE
Confidence 589999999999999999965431 00 001222222233333 6789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchh-HHHHHHH----HHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQ----ALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~q-t~~~~~~----~~~~~~p~ilviNKiD~~ 163 (832)
.+|||||+..|.......++.+|++++|+|++.+-... ....+.. +...+.|+++++||+|+.
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 46 TVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred EEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence 99999999999888888899999999999999862221 2222322 223578999999999987
No 144
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.37 E-value=3.6e-12 Score=153.84 Aligned_cols=115 Identities=22% Similarity=0.337 Sum_probs=90.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
..++|+|+|++|+|||||+++|+.....+.... .|+|.+.......|. +
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~---------------pGvT~d~~~~~~~~~----------------~ 322 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDT---------------PGVTRDRVSYDAEWA----------------G 322 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCC---------------CCeeEEEEEEEEEEC----------------C
Confidence 358999999999999999999975433222211 245555444444554 6
Q ss_pred eEEEEEeCCCCCC--------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~d--------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+++|||||+.. |...+..+++.+|++|+|+|+.+|.......+++.+...++|+++|+||+|+.
T Consensus 323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 7899999999763 45667788999999999999999998888888888888899999999999976
No 145
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.36 E-value=2.4e-12 Score=124.52 Aligned_cols=113 Identities=26% Similarity=0.346 Sum_probs=73.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|+.|+|||||+++|+... .. .+...+++.......+.+. +..+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~---------------~~~~~~~~~~~~~~~~~~~--------------~~~~~ 51 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FI---------------TEYKPGTTRNYVTTVIEED--------------GKTYK 51 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-Cc---------------CcCCCCceeeeeEEEEEEC--------------CEEEE
Confidence 589999999999999999996543 11 1222234444433333332 11378
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcC-------CCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDC-------IEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda-------~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+.+|||||+.+|........+.+++++.++|. .++...+...+++.+.. +.|+++++||+|+.
T Consensus 52 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 52 FNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLR 121 (161)
T ss_pred EEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCC
Confidence 99999999999966555555555555555554 44443444445555433 88999999999987
No 146
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.36 E-value=4.7e-12 Score=125.72 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=79.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++++... . +.+....++.......+.+. +..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~--------------~~~~ 51 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--F--------------PERTEATIGVDFRERTVEID--------------GERI 51 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--C--------------CCccccceeEEEEEEEEEEC--------------CeEE
Confidence 5799999999999999999995321 1 00111111222212222222 2357
Q ss_pred EEEEEeCCCCCCcHH-HHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHHc----CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~-~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~~----~~~p~ilviNKiD~~ 163 (832)
.+++|||||+.+|.. .....++.+|++++|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 52 ~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 52 KVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred EEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 899999999999874 4566788999999999999877766665554 3332 358999999999986
No 147
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.36 E-value=5.8e-12 Score=123.40 Aligned_cols=108 Identities=19% Similarity=0.124 Sum_probs=74.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|+.++|||||+++|..... .++.+ |+......+.+. +..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~------------~~~~~-------t~~~~~~~~~~~----------------~~~~ 45 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV------------VTTIP-------TIGFNVETVTYK----------------NLKF 45 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC------------cCcCC-------ccCcCeEEEEEC----------------CEEE
Confidence 589999999999999999943210 01101 221111223332 6789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHH-HHH---cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLR-QAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~-~~~---~~~~p~ilviNKiD~~ 163 (832)
++|||||+.+|......+++.+|++|+|+|+++...... ...+. ... ..+.|+++++||+|+.
T Consensus 46 ~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 46 QVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 999999999999888889999999999999987533221 22222 222 2468999999999987
No 148
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.36 E-value=7.4e-12 Score=116.06 Aligned_cols=107 Identities=22% Similarity=0.280 Sum_probs=75.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
.|+++|.+|+|||||+++|+........ + ..+.|.......+.+. +..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~---------~------~~~~T~~~~~~~~~~~----------------~~~~ 49 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS---------N------IPGTTRDPVYGQFEYN----------------NKKF 49 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES---------S------STTSSSSEEEEEEEET----------------TEEE
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc---------c------cccceeeeeeeeeeec----------------eeeE
Confidence 4899999999999999999753211111 1 1123443322233333 6677
Q ss_pred EEEeCCCCCC---------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEEC
Q 003305 101 NLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 159 (832)
Q Consensus 101 ~liDTPGh~d---------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNK 159 (832)
.|+||||..+ ....+...+..+|++++|+|+.+........+++++. .+.|+++|+||
T Consensus 50 ~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 50 ILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred EEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 8999999864 2334666778999999999988855556667777775 88899999998
No 149
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.36 E-value=6.8e-12 Score=124.30 Aligned_cols=108 Identities=23% Similarity=0.280 Sum_probs=76.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++|... .. . .+ .-|+......+.+. +..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~-----~-----~~-------~~t~g~~~~~~~~~----------------~~~~ 45 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IP-----K-----KV-------APTVGFTPTKLRLD----------------KYEV 45 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CC-----c-----cc-------cCcccceEEEEEEC----------------CEEE
Confidence 5899999999999999999432 10 0 00 01222222233333 6889
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHHHc----CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
+++||||+..|.......++.+|++|+|+|+++.-..+. ...+..+.. .+.|+++|+||+|+.
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 46 CIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred EEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 999999999999989999999999999999987543322 223333322 468999999999987
No 150
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.36 E-value=4.9e-12 Score=124.32 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=76.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeee-eeEEEEeeccchhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKS-TGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.+|+++|..|+|||||+++++..... . .+.+ |+.. ....+.+. +...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~---------~~~~-------t~~~~~~~~~~~~--------------~~~~ 50 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--T---------DYDP-------TIEDSYTKQCEID--------------GQWA 50 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--c---------ccCC-------CccceEEEEEEEC--------------CEEE
Confidence 58999999999999999999764321 1 0111 1000 01111121 2356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-----HHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-----~~~~~~~~p~ilviNKiD~~ 163 (832)
.+++|||||+.+|.......++.+|++++|+|+++..+.+...-| +.....++|+++++||+|+.
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 51 ILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 899999999999999888999999999999999985443332222 22223478999999999986
No 151
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.35 E-value=4.7e-12 Score=124.25 Aligned_cols=113 Identities=20% Similarity=0.222 Sum_probs=78.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|+.|+|||||+++|+...-.... ...++.......+.. ++....+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~~~~~~l 51 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS----------------QHTIGVEFGSKIIRV--------------GGKRVKL 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC----------------CCceeeeEEEEEEEE--------------CCEEEEE
Confidence 7999999999999999999654321110 001111111111222 1235789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HH---HHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQ---ALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~---~~~~~~p~ilviNKiD~~ 163 (832)
+||||||+.+|.......++.+|++++|+|++++.+.+....| .. ....++|+++++||+|+.
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 9999999999998888999999999999999987666554334 22 223578999999999986
No 152
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.35 E-value=2.7e-12 Score=125.24 Aligned_cols=106 Identities=22% Similarity=0.224 Sum_probs=75.8
Q ss_pred EEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEEEE
Q 003305 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (832)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (832)
++|+.|+|||||++++...... .....|+|+......+.+. +..+++|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~----------------~~~~~li 48 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK----------------VGNWPGVTVEKKEGRFKLG----------------GKEIEIV 48 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc----------------ccCCCCcccccceEEEeeC----------------CeEEEEE
Confidence 5899999999999999443210 0112356776665566664 5789999
Q ss_pred eCCCCCCcHHH------HHHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 104 DSPGHVDFSSE------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 104 DTPGh~df~~~------~~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
||||+.+|... ....+ ..+|++++|+|+.... +....+.++...++|+++++||+|+.
T Consensus 49 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 49 DLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred ECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCCEEEEEehhhhc
Confidence 99999887642 23344 3899999999998732 23344456667789999999999986
No 153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.35 E-value=1.3e-11 Score=123.21 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=81.8
Q ss_pred HHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhc
Q 003305 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (832)
Q Consensus 8 ~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (832)
.+.+++... ..++|+++|+.|+|||||+++|....- . .. ..|+......+.+.
T Consensus 5 ~~~~~~~~~-~~~kv~~~G~~~~GKTsl~~~l~~~~~--~----------~~-------~~t~~~~~~~~~~~------- 57 (174)
T cd04153 5 SLWSLFFPR-KEYKVIIVGLDNAGKTTILYQFLLGEV--V----------HT-------SPTIGSNVEEIVYK------- 57 (174)
T ss_pred HHHHHhcCC-CccEEEEECCCCCCHHHHHHHHccCCC--C----------Cc-------CCccccceEEEEEC-------
Confidence 344555432 357899999999999999999953211 0 00 01222222333443
Q ss_pred cccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH--HHHHHHHHc---CCCCeEEEEECCCc
Q 003305 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLRQALG---ERIRPVLTVNKMDR 162 (832)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt--~~~~~~~~~---~~~p~ilviNKiD~ 162 (832)
+..+.++||||+..|.......++.+|++|+|+|+++...... ..+.+.... .++|+++++||+|+
T Consensus 58 ---------~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 58 ---------NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred ---------CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence 6789999999999998888899999999999999987643221 122222222 35799999999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 129 ~ 129 (174)
T cd04153 129 K 129 (174)
T ss_pred C
Confidence 6
No 154
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.34 E-value=7.7e-12 Score=122.73 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=78.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..++|||||+++|....-. . + ....+..+.....+.+. ..+....+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~--~---------~-----~~~t~~~~~~~~~~~~~------------~~~~~~~~ 53 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT--K---------D-----YKKTIGVDFLEKQIFLR------------QSDEDVRL 53 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C---------C-----CCCcEEEEEEEEEEEEc------------CCCCEEEE
Confidence 6899999999999999999543110 0 0 00111111111112221 11236789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHH---cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~---~~~~p~ilviNKiD~~ 163 (832)
+||||||+.+|.......++.+|++++|+|+++....+...-|.... ..++|+++++||+|+.
T Consensus 54 ~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 54 MLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 99999999999998899999999999999998865554443343222 2478999999999986
No 155
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.34 E-value=7.3e-12 Score=124.08 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=78.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|++|+|||||+++++...-.... + ...|.+..... +.+. +...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~---------~-----~t~~~~~~~~~--~~~~--------------~~~~ 53 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH---------D-----LTIGVEFGARM--ITID--------------GKQI 53 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC---------C-----CccceeEEEEE--EEEC--------------CEEE
Confidence 368999999999999999999643211110 0 01112222221 2221 2256
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHHc---CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~~---~~~p~ilviNKiD~~ 163 (832)
.+++|||||+.+|.......++.+|++++|+|+++..+.+....|- .... .+.|++++.||+|+.
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 54 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 8999999999999888889999999999999999765555443332 2222 367899999999986
No 156
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.33 E-value=7.8e-12 Score=123.51 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=75.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEE
Q 003305 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (832)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (832)
|+++|..|+|||||+++|....-. .++.+ |+......+.+ ++..+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-----------~~~~p-------t~g~~~~~i~~----------------~~~~l~ 47 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-----------ESVVP-------TTGFNSVAIPT----------------QDAIME 47 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-----------ccccc-------cCCcceEEEee----------------CCeEEE
Confidence 789999999999999999543210 01111 11111122333 368899
Q ss_pred EEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHH--cCCCCeEEEEECCCcc
Q 003305 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 102 liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~--~~~~p~ilviNKiD~~ 163 (832)
+|||||+.+|.......++.+|++|+|+|+++....... ..+..+. ..++|+++|+||+|+.
T Consensus 48 i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 48 LLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred EEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 999999999999889999999999999999885433322 2223332 2578999999999986
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.33 E-value=8.3e-12 Score=141.69 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=83.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
-.+|+++|++|+|||||+++|+.....+..... |+|.+.....+.++ ++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~p---------------gtTrd~~~~~i~~~----------------g~ 251 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIK---------------GTTRDVVEGDFELN----------------GI 251 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCC---------------CcEEEEEEEEEEEC----------------CE
Confidence 458999999999999999999765433322222 34554444445554 67
Q ss_pred EEEEEeCCCCCCcHHH--------HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~--------~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+++|||||+.++... ...+++.+|++++|+|++++...... .+..+...++|+++|+||+|+.
T Consensus 252 ~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 252 LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCC
Confidence 8999999999765432 34577899999999999987765554 4555555688999999999986
No 158
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.33 E-value=1.6e-11 Score=120.54 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=78.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|++|+|||||+++|+...-. ......++.......+.+. +....+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 51 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS----------------EQYKSTIGVDFKTKTIEVD--------------GKRVKL 51 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEEC--------------CEEEEE
Confidence 7999999999999999999643210 0001111222222222222 224689
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHHc---CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~~---~~~p~ilviNKiD~~ 163 (832)
+++||||+..|.......++.+|++|+|+|+++..+.+....|. .... .++|+++++||+|+.
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 99999999999988899999999999999999866555443342 2222 468999999999976
No 159
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.32 E-value=9.1e-12 Score=122.05 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=79.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
++|+++|+.++|||||+++|+...-... ...+++.+.....+.++ +....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~~~~ 50 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ----------------YQATIGIDFLSKTMYLE--------------DKTVR 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc----------------CCCceeeeEEEEEEEEC--------------CEEEE
Confidence 4799999999999999999965432111 11122333222233332 22467
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH-cC--CCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-GE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~-~~--~~p~ilviNKiD~~ 163 (832)
+++|||||+..|...+...++.+|++++|+|+++..+.+....| .... .. +.|+++++||+|+.
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 99999999999998888999999999999999886555443333 2222 23 48999999999985
No 160
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.32 E-value=2.7e-11 Score=118.55 Aligned_cols=114 Identities=24% Similarity=0.220 Sum_probs=78.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
...|+++|++|+|||||+++|+...-....... +.+.......+.. ...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~----------------~~~ 51 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRNRIRGIYTD----------------DDA 51 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC---------------CceeceEEEEEEc----------------CCe
Confidence 468999999999999999999654211111000 0111111111111 256
Q ss_pred EEEEEeCCCCCCcH--------HHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~--------~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.+.. ......+..+|++++|+|+++........+++.+...+.|.++++||+|+.
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 89999999987543 234566889999999999998755566666677777789999999999976
No 161
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.31 E-value=1.7e-11 Score=121.10 Aligned_cols=112 Identities=20% Similarity=0.187 Sum_probs=69.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
|+|+++|+.|+|||||+++|+....... ...+.|.........+ ++..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~----------------~~~~ 48 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA----------------PYPFTTKSLFVGHFDY----------------KYLR 48 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC----------------CCCCcccceeEEEEcc----------------CceE
Confidence 6899999999999999999955321100 0112233222222222 2679
Q ss_pred EEEEeCCCCCCcH--------HHHHHHh-hccCcEEEEEcCCCccc---hhHHHHHHHHHcC--CCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGVC---VQTETVLRQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~--------~~~~~~l-~~~D~ailVvda~~g~~---~qt~~~~~~~~~~--~~p~ilviNKiD~~ 163 (832)
++||||||+.+.. .....++ ..+|++++|+|+++... ......+..+... +.|+++++||+|+.
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 49 WQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred EEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC
Confidence 9999999985321 1122222 34699999999987432 1112333444443 78999999999986
No 162
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.31 E-value=2.4e-11 Score=120.14 Aligned_cols=111 Identities=20% Similarity=0.176 Sum_probs=76.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|+.|+|||||+++|.+..- ...... .. ...++ ...+ ++....+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~--~~~~~~---~~--------~~~~~-----~~~~--------------~~~~~~~ 49 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--PENVPR---VL--------PEITI-----PADV--------------TPERVPT 49 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CccCCC---cc--------cceEe-----eeee--------------cCCeEEE
Confidence 789999999999999999965321 110000 00 01111 1111 1236789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHH-HHHH--cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
++|||||+.++...+...++.+|++++|+|+++..+.+.. ..| ..+. ..+.|+++|+||+|+.
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~ 116 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLR 116 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 9999999999888888889999999999999987665552 223 2222 2468999999999986
No 163
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.30 E-value=1.4e-11 Score=119.64 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=74.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEE
Q 003305 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (832)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (832)
|+++|+.|+|||||+++|....- ..++.+ |+......+.+. ...+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-----------~~~~~~-------t~~~~~~~~~~~----------------~~~~~ 47 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-----------SEDTIP-------TVGFNMRKVTKG----------------NVTLK 47 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-----------CcCccC-------CCCcceEEEEEC----------------CEEEE
Confidence 79999999999999999943211 111111 221122222232 57899
Q ss_pred EEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchh-HHHHHHHHHc----CCCCeEEEEECCCcc
Q 003305 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 102 liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~q-t~~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
++||||+..|...+...++.+|++++|+|+.+..... ....+..... .++|+++++||+|+.
T Consensus 48 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 48 VWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 9999999999999999999999999999998743322 2223333222 467999999999986
No 164
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.30 E-value=1.2e-11 Score=121.68 Aligned_cols=111 Identities=23% Similarity=0.308 Sum_probs=75.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCCceE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+|+++|++|+|||||+++|+...-. . ++.+ |+... .....+ ++....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~---------~~~~-------t~~~~~~~~~~~--------------~~~~~~ 49 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--D---------DYDP-------TIEDSYRKQIEI--------------DGEVCL 49 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--c---------ccCC-------chhhhEEEEEEE--------------CCEEEE
Confidence 7899999999999999999653311 1 0000 11000 011111 123578
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-----HHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-----~~~~~~~~p~ilviNKiD~~ 163 (832)
+.+|||||+.+|.......++.+|++++|+|+++..+.....-| +.....+.|+++++||+|+.
T Consensus 50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 89999999999999888899999999999999875443332222 22223467999999999986
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.29 E-value=1.2e-11 Score=141.22 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=82.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
-.+|+++|++|+|||||+++|+.....+..... |.|.+.....+.+. +.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~---------------gtT~d~~~~~i~~~----------------g~ 263 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIA---------------GTTRDVIEEHINLD----------------GI 263 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC---------------CcccccEEEEEEEC----------------Ce
Confidence 358999999999999999999654332222112 34444434444443 67
Q ss_pred EEEEEeCCCCCCcHHH--------HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~--------~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++++||||+.++... +...++.+|++++|+|++++...+....|.. ..+.|+++|+||+|+.
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 8999999999876432 3446788999999999998877666666655 4578999999999987
No 166
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.29 E-value=1.5e-11 Score=123.75 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=76.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|+.|+|||||++++++.... ...+ ..|.+.. ...+.+. ++....
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~------------~~~~---t~~~~~~--~~~~~~~-------------~~~~~~ 53 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV------------NTVP---TKGFNTE--KIKVSLG-------------NSKGIT 53 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC------------CcCC---cccccee--EEEeecc-------------CCCceE
Confidence 46899999999999999999653211 0000 0111111 1111111 123678
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+++|||||+..|...+...++.+|++|+|+|+++....... .++......+.|+++++||+|+.
T Consensus 54 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 54 FHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 99999999999988888889999999999999886333221 22233334578999999999986
No 167
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.29 E-value=1.7e-11 Score=121.46 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=75.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|+.|+|||||+++|+...-.... ...++.......+.+. +....+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~~~~~ 51 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY----------------KATIGADFLTKEVTVD--------------DKLVTL 51 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc----------------CCccceEEEEEEEEEC--------------CEEEEE
Confidence 7899999999999999999654211000 0000111111112221 235678
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHH-----HH---cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-----AL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~-----~~---~~~~p~ilviNKiD~~ 163 (832)
++|||||+.+|.......++.+|++|+|+|+.+..+.+....|.. +. ..++|+++++||+|+.
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 52 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 899999999999888899999999999999988654433333321 11 1268999999999986
No 168
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.29 E-value=5.1e-11 Score=121.81 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=77.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee--eEEEEeeccchhhccccCcCCCCce
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST--GISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+|+++|..|+|||||+++|+...- .. .+. -|+... ...+.+. .++..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~--~~---------~~~-------~t~~~d~~~~~v~~~-------------~~~~~ 50 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF--SQ---------HYK-------ATIGVDFALKVIEWD-------------PNTVV 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CC---------CCC-------CceeEEEEEEEEEEC-------------CCCEE
Confidence 789999999999999999965321 10 000 122211 1112221 13467
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHH-------cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL-------GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~-------~~~~p~ilviNKiD~~ 163 (832)
.+.||||||+..|.......++.+|++|+|+|.++....+....|. .+. ..++|+++|+||+|+.
T Consensus 51 ~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 51 RLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred EEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 8999999999999888888999999999999998865544433332 111 2467999999999986
No 169
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.28 E-value=2.2e-11 Score=124.78 Aligned_cols=116 Identities=23% Similarity=0.218 Sum_probs=73.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+|+|++|+|||||+++|+........ .. +.|+......+.+. +
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~-~~---------------~~t~~~~~~~~~~~---------------~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED-QL---------------FATLDPTTRRLRLP---------------D 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC-cc---------------ceeccceeEEEEec---------------C
Confidence 34679999999999999999999654311110 00 11232222233332 1
Q ss_pred ceEEEEEeCCCCCCc-HH-------HHHHHhhccCcEEEEEcCCCccchhHHH----HHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDF-SS-------EVTAALRITDGALVVVDCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df-~~-------~~~~~l~~~D~ailVvda~~g~~~qt~~----~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.+++|||||+.+. .. .+...+..+|++++|+|++++....... .++.....++|+++|+||+|+.
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 348999999998542 11 1223466899999999999875544332 2222223467999999999987
No 170
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.28 E-value=2.1e-11 Score=120.46 Aligned_cols=114 Identities=20% Similarity=0.214 Sum_probs=77.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|+.|+|||||+++|.... ... +..+ .-|...... .+.. ++....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~--~~~---------~~~~---t~~~~~~~~--~~~~--------------~~~~~~ 52 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FMA---------DCPH---TIGVEFGTR--IIEV--------------NGQKIK 52 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC---------CCCc---ccceeEEEE--EEEE--------------CCEEEE
Confidence 589999999999999999995431 111 0000 001111111 1112 223578
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHH---cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~---~~~~p~ilviNKiD~~ 163 (832)
+.+|||||+..|.......++.+|++|+|+|.++..+.+....|. ... ..+.|++++.||+|+.
T Consensus 53 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 53 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999999998889999999999999999865554443332 222 2456888999999986
No 171
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.28 E-value=2.6e-11 Score=120.02 Aligned_cols=115 Identities=19% Similarity=0.170 Sum_probs=78.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|..|+|||||++++....- .. +....++.......+.+. +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f--~~--------------~~~~t~~~~~~~~~~~~~--------------~~~~ 52 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF--NP--------------SFISTIGIDFKIRTIELD--------------GKKI 52 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC--Cc--------------ccccCccceEEEEEEEEC--------------CEEE
Confidence 46899999999999999999954321 00 000011111111122222 2356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHH---cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~---~~~~p~ilviNKiD~~ 163 (832)
.+.++||||+.+|.......++.+|++|+|+|++++.+.+...-|. .+. ..+.|++++.||+|+.
T Consensus 53 ~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred EEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 8999999999999888888899999999999998865544432332 222 2467899999999986
No 172
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.28 E-value=3.7e-11 Score=124.84 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=82.0
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccC-ceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERG-ITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rg-iTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
..+.|+++|++|+|||||+++|+....... .. ...| +++ +. .+
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~--------~~------~~~g~i~i--------~~--------------~~ 81 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQN--------IS------DIKGPITV--------VT--------------GK 81 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCc--------cc------cccccEEE--------Ee--------------cC
Confidence 457799999999999999999976422110 00 1112 111 10 12
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEE-EEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL-TVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~il-viNKiD~~ 163 (832)
+.+++++||||+. ..+..+++.+|.+++|+|+.+|...++..++..+...++|.++ |+||+|+.
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 6789999999975 6777888999999999999999999999999998888899655 99999986
No 173
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.28 E-value=1.8e-11 Score=119.99 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=77.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|+.|+|||||+++|+....... .+...+.+.... .+.+. +....+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~--~~~~~--------------~~~~~~ 51 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD--------------LAATIGVDFKVK--TLTVD--------------GKKVKL 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--------------cCCcccceEEEE--EEEEC--------------CEEEEE
Confidence 789999999999999999964321110 011112222211 12221 125789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-----HHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-----QALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-----~~~~~~~p~ilviNKiD~~ 163 (832)
.++||||+..|.......++.+|++++|+|+++....+....|. .+...+.|+++++||+|+.
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 99999999999888888899999999999998765554433332 2223567899999999986
No 174
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.27 E-value=3.1e-11 Score=119.17 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=77.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+.+|+++|..|+|||||+++|+...-... ....++.......+.+. +...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~~~ 51 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES----------------YISTIGVDFKIRTIELD--------------GKTI 51 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCccceeEEEEEEEEC--------------CEEE
Confidence 36899999999999999999964321100 00011211111222221 2356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.+|.......++.+|++|+|+|+++..+......| ..... .+.|++++.||+|+.
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 52 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 889999999999998888899999999999999875443332223 22222 457999999999976
No 175
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.27 E-value=4.2e-11 Score=118.81 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=74.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..++|||||+++|.... . ..+. .|+......+.+. +..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~----------~~~~-------~T~~~~~~~~~~~----------------~~~i 45 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F----------MQPI-------PTIGFNVETVEYK----------------NLKF 45 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C----------CCcC-------CcCceeEEEEEEC----------------CEEE
Confidence 57899999999999999995421 0 0111 1222222223333 6899
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHHHc----CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
+++||||+.+|...+...++.+|++++|+|+++.-.... ...+..... .+.|+++|+||+|+.
T Consensus 46 ~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 46 TIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred EEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 999999999998888889999999999999987432222 222232322 247899999999986
No 176
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.27 E-value=2.6e-11 Score=118.66 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=75.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeee-eeEEEEeeccchhhccccCcCCCCceE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKS-TGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+|+++|..|+|||||+++|+...- .. .+.+ |+.. ....+.+. +..+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~--~~---------~~~~-------t~~~~~~~~~~~~--------------~~~~~ 50 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHF--VD---------EYDP-------TIEDSYRKQVVID--------------GETCL 50 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--cC---------CcCC-------cchheEEEEEEEC--------------CEEEE
Confidence 789999999999999999965321 10 0000 1100 01111221 22467
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HH----HHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQ----ALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~----~~~~~~p~ilviNKiD~~ 163 (832)
+++|||||+.+|.......++.+|++++|+|.++....+....| .. ....+.|+++++||+|+.
T Consensus 51 ~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 51 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 88999999999999899999999999999999875433332222 22 223478999999999986
No 177
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.27 E-value=2.8e-11 Score=119.51 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=77.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
-+.|.++|+.|+|||+|..+|.+... .. +++ ++.. .+.+.+ ...+..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~------~~--T~t-----------S~e~-n~~~~~-------------~~~~~~ 49 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT------VP--TVT-----------SMEN-NIAYNV-------------NNSKGK 49 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-----------B--------------SSE-EEECCG-------------SSTCGT
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc------CC--eec-----------cccC-CceEEe-------------ecCCCC
Confidence 36899999999999999999966521 11 111 1211 111111 112356
Q ss_pred EEEEEeCCCCCCcHHHHHHH---hhccCcEEEEEcCCCccchhHHHH-------HHHHH--cCCCCeEEEEECCCccccc
Q 003305 99 LINLIDSPGHVDFSSEVTAA---LRITDGALVVVDCIEGVCVQTETV-------LRQAL--GERIRPVLTVNKMDRCFLE 166 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~---l~~~D~ailVvda~~g~~~qt~~~-------~~~~~--~~~~p~ilviNKiD~~~~~ 166 (832)
.+.+||+|||..+....... +..+.++|+|||++. ...+-+.+ +.... ..++|++|++||.|+.
T Consensus 50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~--- 125 (181)
T PF09439_consen 50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF--- 125 (181)
T ss_dssp CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST---
T ss_pred EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc---
Confidence 78999999999998887776 889999999999974 22222222 22222 3466788999999998
Q ss_pred ccCC-HHHHHHHHHHHHHHhh
Q 003305 167 LQVD-GEEAYQTFSRVVENAN 186 (832)
Q Consensus 167 ~~~~-~~~~~~~~~~~~~~~~ 186 (832)
.+- +..+...+++-++.+.
T Consensus 126 -~A~~~~~Ik~~LE~Ei~~lr 145 (181)
T PF09439_consen 126 -TAKPPKKIKKLLEKEIDKLR 145 (181)
T ss_dssp -T---HHHHHHHHHHHHHHHH
T ss_pred -ccCCHHHHHHHHHHHHHHHH
Confidence 553 4555666666555543
No 178
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=6.3e-11 Score=116.84 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=84.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCcccc-ccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
....-||++|.+|+|||||+|+|.+..+.... ..+ |.|..... +.+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktP---------------GrTq~iNf--f~~~--------------- 69 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTP---------------GRTQLINF--FEVD--------------- 69 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCC---------------CccceeEE--EEec---------------
Confidence 45678999999999999999999765432211 123 44555443 2332
Q ss_pred CceEEEEEeCCCCCC----------cHHHHHHHh---hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCc
Q 003305 96 NEYLINLIDSPGHVD----------FSSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~d----------f~~~~~~~l---~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~ 162 (832)
..+.|||.||+.- +...+..++ ....+++++||+.+++....++.++.+...++|+++++||+|+
T Consensus 70 --~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DK 147 (200)
T COG0218 70 --DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADK 147 (200)
T ss_pred --CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 2488999999741 222333444 3468899999999999999999999999999999999999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 148 i 148 (200)
T COG0218 148 L 148 (200)
T ss_pred C
Confidence 7
No 179
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.26 E-value=2.3e-11 Score=120.37 Aligned_cols=113 Identities=18% Similarity=0.173 Sum_probs=77.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++++...- .. .+ ..|+........+. .+.+...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~~---------~~-------~~t~~~~~~~~~~~------------~~~~~~~l 51 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF--EK---------KY-------VATLGVEVHPLDFH------------TNRGKIRF 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC---------CC-------CCceeeEEEEEEEE------------ECCEEEEE
Confidence 789999999999999999964321 00 00 01222222222222 12236789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc--CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
.+|||||+.+|.......++.+|++|+|+|++++.+.+....| ..+.. .++|+++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 9999999999887777788999999999999987665544333 22222 268999999999986
No 180
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.26 E-value=7.3e-11 Score=116.94 Aligned_cols=116 Identities=20% Similarity=0.151 Sum_probs=77.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|..|+|||||+++++...- .. +....++.......+.+ +++.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~--------------~~~~ 53 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF--DT--------------QLFHTIGVEFLNKDLEV--------------DGHF 53 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC--Cc--------------CcCCceeeEEEEEEEEE--------------CCeE
Confidence 346899999999999999999954211 00 00011111111112222 2235
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-----HHH---cCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-----QAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-----~~~---~~~~p~ilviNKiD~~ 163 (832)
..+.||||||+..|.......++.+|++++|+|.++..+.+....|. .+. ..++|+++++||+|+.
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 78899999999999988888999999999999998765444433332 111 2457999999999985
No 181
>PTZ00369 Ras-like protein; Provisional
Probab=99.26 E-value=4.6e-11 Score=120.89 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=77.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|..|+|||||+++++...- .. .+.+. -+.+.. ..+.+ ++..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~---------~~~~t---~~~~~~---~~~~~--------------~~~~~ 53 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--ID---------EYDPT---IEDSYR---KQCVI--------------DEETC 53 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--Cc---------CcCCc---hhhEEE---EEEEE--------------CCEEE
Confidence 36899999999999999999965321 00 00000 001110 11111 12357
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HH----HcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA----LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~----~~~~~p~ilviNKiD~~ 163 (832)
.++||||||+.+|.......++.+|++++|+|+++..+......|. .. ...++|+++++||+|+.
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 8999999999999999889999999999999999865433332222 22 22367999999999985
No 182
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.26 E-value=2.1e-11 Score=124.29 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=75.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|+.|+|||||+++|++..- ... +.+ .+.......+.+. +....+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~---------~~~------t~~~~~~~~~~~~--------------~~~~~l 49 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPK---------YRR------TVEEMHRKEYEVG--------------GVSLTL 49 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--Ccc---------CCC------chhhheeEEEEEC--------------CEEEEE
Confidence 489999999999999999965321 100 000 0111111122222 124689
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-----HHHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-----~~~~~~~~p~ilviNKiD~~ 163 (832)
+||||||+.+|......+++.+|++|+|+|+++....+....| +.....++|+++++||+|+.
T Consensus 50 ~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 50 DILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 9999999999988778889999999999999886544433222 22223578999999999986
No 183
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.26 E-value=2.6e-11 Score=121.39 Aligned_cols=113 Identities=22% Similarity=0.268 Sum_probs=77.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
++|+++|++|+|||||+++|+........ ... +.......+.+. +.++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~--------~~t---------~~~~~~~~~~~~--------------~~~~~ 50 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY--------YPT---------IENTFSKIIRYK--------------GQDYH 50 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc--------Ccc---------hhhhEEEEEEEC--------------CEEEE
Confidence 68999999999999999999753211000 000 000001111121 12567
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHH-HHHHH----cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~-~~~~~----~~~~p~ilviNKiD~~ 163 (832)
+.+|||||+.+|.......+..+|++++|+|.++....+.... +.... ..+.|+++++||+|+.
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 8999999999999888889999999999999998765544322 23222 3467999999999976
No 184
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.26 E-value=4.3e-11 Score=118.68 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=75.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|.... . ..+.+ |+......+.+. +.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~--~----------~~~~~-------t~g~~~~~~~~~----------------~~ 53 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQ--S----------VTTIP-------TVGFNVETVTYK----------------NV 53 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCC--C----------ccccC-------CcccceEEEEEC----------------CE
Confidence 3689999999999999999994321 0 00111 111111122222 67
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHHH----cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
.+++|||||+..|.......++.+|++|+|+|+++...... ...|.... ..+.|++|++||+|+.
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 89999999999998888888999999999999987533222 22232222 2357999999999986
No 185
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.26 E-value=4e-11 Score=122.39 Aligned_cols=113 Identities=18% Similarity=0.266 Sum_probs=79.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
.|+++|..|+|||||+.++.... ... +....+++......+.++ ++...+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~~--------------~~~~Ti~~~~~~~~i~~~--------------~~~v~l 51 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FCE--------------ACKSGVGVDFKIKTVELR--------------GKKIRL 51 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCC--------------cCCCcceeEEEEEEEEEC--------------CEEEEE
Confidence 58999999999999999995421 110 001111112111122222 235789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHH----cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
+||||+|+..|...+...++.+|++|+|+|.++..+.+....|.... ..+.|+++|.||+|+.
T Consensus 52 ~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 52 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999999999999999999999876666554443222 2467899999999986
No 186
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.26 E-value=2.8e-11 Score=119.10 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=75.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|++++|||||+++|+...-.. +....++.......+.+ ++....+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~--------------~~~~~~l 51 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS----------------KYLPTIGIDYGVKKVSV--------------RNKEVRV 51 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEE--------------CCeEEEE
Confidence 78999999999999999996532110 00001111111111221 1236789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc--------CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--------ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~--------~~~p~ilviNKiD~~ 163 (832)
+||||||+.+|.......++.+|++|+|+|.++....+...-| ..+.+ .+.|+++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 9999999999988888888999999999999976444433333 22211 357889999999975
No 187
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.26 E-value=3.3e-11 Score=118.85 Aligned_cols=112 Identities=18% Similarity=0.300 Sum_probs=73.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++++... .. + ++.+... +.... ...+ +++...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~----~-----~~~~t~~----~~~~~--~~~~--------------~~~~~~~ 49 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI----G-----EYDPNLE----SLYSR--QVTI--------------DGEQVSL 49 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc----c-----ccCCChH----HhceE--EEEE--------------CCEEEEE
Confidence 58999999999999999996421 10 1 0111000 11111 1111 1235678
Q ss_pred EEEeCCCCCC-cHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH-----cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~d-f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~-----~~~~p~ilviNKiD~~ 163 (832)
.+|||||+.. +.......++.+|++|+|+|+++..+.+....| ..+. ..++|+++|+||+|+.
T Consensus 50 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 50 EILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 9999999985 456678889999999999999987555433322 2222 2368999999999975
No 188
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.26 E-value=3.4e-11 Score=116.78 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=76.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|++++|||||+++|......... .+..+.......+... .....+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~~~~~ 51 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY----------------KSTIGVDFKSKTIEID--------------GKTVKL 51 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc----------------CCceeeeeEEEEEEEC--------------CEEEEE
Confidence 7899999999999999999543221110 0011111111222221 125789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~~p~ilviNKiD~~ 163 (832)
+++||||+..|.......++.+|++++|+|+.+.........| ..... .+.|.++++||+|+.
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 9999999999999999999999999999999885433332223 23333 348999999999985
No 189
>PRK04213 GTP-binding protein; Provisional
Probab=99.25 E-value=4.9e-11 Score=121.80 Aligned_cols=111 Identities=23% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|+.|+|||||+++|....- ..+...|+|.... .+.+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~--~~~~----------------- 51 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPN--HYDW----------------- 51 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCce--EEee-----------------
Confidence 3456899999999999999999943210 1112234555432 2222
Q ss_pred ceEEEEEeCCCCCC-----------cHHHHH----HHhhccCcEEEEEcCCCcc-----------chhHHHHHHHHHcCC
Q 003305 97 EYLINLIDSPGHVD-----------FSSEVT----AALRITDGALVVVDCIEGV-----------CVQTETVLRQALGER 150 (832)
Q Consensus 97 ~~~i~liDTPGh~d-----------f~~~~~----~~l~~~D~ailVvda~~g~-----------~~qt~~~~~~~~~~~ 150 (832)
. .+++|||||+.+ |...+. .++..+|++++|+|+.... ...+..++..+...+
T Consensus 52 ~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 130 (201)
T PRK04213 52 G-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELG 130 (201)
T ss_pred c-ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcC
Confidence 1 589999999633 222222 2445678999999997532 234456667766778
Q ss_pred CCeEEEEECCCcc
Q 003305 151 IRPVLTVNKMDRC 163 (832)
Q Consensus 151 ~p~ilviNKiD~~ 163 (832)
+|+++++||+|+.
T Consensus 131 ~p~iiv~NK~Dl~ 143 (201)
T PRK04213 131 IPPIVAVNKMDKI 143 (201)
T ss_pred CCeEEEEECcccc
Confidence 9999999999986
No 190
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.25 E-value=3.2e-11 Score=118.47 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=76.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|+.++|||||+++|+...-... .....|.+.....+. +. +....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~v~--~~--------------~~~~~ 51 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSEN--------------QESTIGAAFLTQTVN--LD--------------DTTVK 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEEEEE--EC--------------CEEEE
Confidence 3789999999999999999965431110 011111122222222 21 23678
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---CCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~~p~ilviNKiD~~ 163 (832)
+.+|||||+..|.......++.+|++++|+|+++.-.......| ..+.. .+.|+++++||+|+.
T Consensus 52 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 52 FEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999999988888889999999999999875433332222 32222 357889999999976
No 191
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.25 E-value=8.5e-11 Score=114.95 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=76.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++|+........ . +.++.......+.+. +....+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~--------------~~~~~~~~~~~~~~~--------------~~~~~~ 51 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--E--------------STTQASFFQKTVNIG--------------GKRIDL 51 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc--C--------------CccceeEEEEEEEEC--------------CEEEEE
Confidence 7999999999999999999654321100 0 001111111111111 125679
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH----HHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~----~~~~~~~p~ilviNKiD~~ 163 (832)
++|||||+..|.......++.+|++++|+|++++...+....|. .....++|+++++||+|+.
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999998888888889999999999998876544433332 2223367899999999986
No 192
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.25 E-value=7.5e-11 Score=115.82 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=73.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++|.... . ..+.+ |+......+.+. ...+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~--~----------~~~~p-------t~g~~~~~~~~~----------------~~~~ 46 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGE--I----------VTTIP-------TIGFNVETVEYK----------------NISF 46 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--C----------cccCC-------CCCcceEEEEEC----------------CEEE
Confidence 68999999999999999994211 1 11111 111111122222 6789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchh-HHHHHHHHHc----CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~q-t~~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
++|||||+..|.......++.+|++|+|+|+++..... ....|..... .+.|+++++||+|+.
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 99999999999888888899999999999998743222 1222332221 357899999999986
No 193
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.24 E-value=6.4e-11 Score=116.14 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=75.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|.+|+|||||+++|+...- .....+ ...+. . .....+ ++....+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~--~~~~~----------~---~~~~~~--------------~~~~~~~ 50 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEP--TKADS----------Y---RKKVVL--------------DGEDVQL 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--ccccCC--cchhh----------E---EEEEEE--------------CCEEEEE
Confidence 799999999999999999975321 110000 00000 0 001111 1235789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccch-----hHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-----QTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~-----qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+|||||+.+|......+++.+|++++|+|..+.-+. ....+++.....++|+++|+||+|+.
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 9999999999999999999999999999998864322 11222222223578999999999987
No 194
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.24 E-value=6.2e-11 Score=117.77 Aligned_cols=113 Identities=15% Similarity=0.198 Sum_probs=77.2
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
..+..+|+++|+.|+|||||+++|....- ... ....|+++ ..+.+.
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~------------~~~---~~t~g~~~----~~i~~~--------------- 56 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDI------------SHI---TPTQGFNI----KTVQSD--------------- 56 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCC------------ccc---CCCCCcce----EEEEEC---------------
Confidence 34467899999999999999999943210 000 01112222 122332
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchh-HHHHH----HHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVL----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~q-t~~~~----~~~~~~~~p~ilviNKiD~~ 163 (832)
+..+.++||||+..|...+...++.+|++++|+|+.+..... ....+ ......++|+++++||+|+.
T Consensus 57 -~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 57 -GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred -CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 678999999999999888888899999999999998632221 12222 22223568999999999986
No 195
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.24 E-value=1.8e-11 Score=117.54 Aligned_cols=97 Identities=21% Similarity=0.178 Sum_probs=67.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
++|+++|++|+|||||+++|.... . .+ .-|+ ...|. .
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~-----------~--~~-------~~t~-----~~~~~----------------~-- 37 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEE-----------I--LY-------KKTQ-----AVEYN----------------D-- 37 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCc-----------c--cc-------ccce-----eEEEc----------------C--
Confidence 379999999999999999994221 0 00 0121 22332 2
Q ss_pred EEEEeCCCCC----CcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHV----DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~----df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+|||||.. .+...+..+++.+|++++|+|++++.+.+...++.. .+.|.++++||+|+.
T Consensus 38 -~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 38 -GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred -eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 689999973 334444556889999999999999887766443332 235999999999986
No 196
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.24 E-value=6.9e-11 Score=116.41 Aligned_cols=112 Identities=20% Similarity=0.261 Sum_probs=76.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.+|+++|..|+|||||+++++.. ........ |+... ...+.. ++..+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~~~~~----------------t~~~~~~~~~~~--------------~~~~~ 49 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVEKYDP----------------TIEDSYRKQVEV--------------DGQQC 49 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCcccCC----------------cchheEEEEEEE--------------CCEEE
Confidence 37899999999999999999642 11110000 11111 111222 12356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHH----HcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQA----LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~----~~~~~p~ilviNKiD~~ 163 (832)
.+++|||||+..|.......++.+|++++|+|.++....+... .+... ...++|+++++||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 7889999999999999999999999999999998755443322 22222 23568999999999986
No 197
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.24 E-value=3.9e-11 Score=131.75 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=90.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
-.+++|+|.+|+|||||+|+|+....+|....+| +|.+.-...+..+ ++
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~G---------------TTRDviee~i~i~----------------G~ 265 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAG---------------TTRDVIEEDINLN----------------GI 265 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCC---------------CccceEEEEEEEC----------------CE
Confidence 3589999999999999999999998888777677 3444444555554 89
Q ss_pred EEEEEeCCCCCCcHH--------HHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~--------~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.++||.|..+-.. ....++..||.+++|+|++.+...+...++. ....+.|+++++||+|+.
T Consensus 266 pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~ 337 (454)
T COG0486 266 PVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLV 337 (454)
T ss_pred EEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcc
Confidence 999999999765332 2456788999999999999987777666665 556778999999999998
No 198
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.24 E-value=5.4e-11 Score=115.05 Aligned_cols=110 Identities=23% Similarity=0.203 Sum_probs=79.4
Q ss_pred EEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEEEE
Q 003305 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (832)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (832)
++|+.|+|||||+++|........ ....+.|.........+. ....+.+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV---------------SPVPGTTTDPVEYVWELG---------------PLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc---------------CCCCCcEECCeEEEEEec---------------CCCcEEEE
Confidence 589999999999999965432211 111223333333333322 15689999
Q ss_pred eCCCCCCcH-------HHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 104 DSPGHVDFS-------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 104 DTPGh~df~-------~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
||||+.++. ..+...++.+|++++|+|+..+.......++......+.|.++++||+|+.
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 999998765 345568899999999999999887777665666777889999999999987
No 199
>PLN03118 Rab family protein; Provisional
Probab=99.24 E-value=6.9e-11 Score=121.81 Aligned_cols=114 Identities=19% Similarity=0.233 Sum_probs=78.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+|+|+.|+|||||+++|+...- .. . ....+.......+.+. +..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~--~~----------~-----~~t~~~~~~~~~~~~~--------------~~~~ 62 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV--ED----------L-----APTIGVDFKIKQLTVG--------------GKRL 62 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC--CC----------c-----CCCceeEEEEEEEEEC--------------CEEE
Confidence 46899999999999999999965321 10 0 0011111111222222 2357
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHH-----cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~-----~~~~p~ilviNKiD~~ 163 (832)
.++|+||||+.+|.......++.+|++|+|+|+++....+.. ..|.... ..+.|.++|+||+|+.
T Consensus 63 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 63 KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 899999999999999889999999999999999986554443 2343221 2356889999999986
No 200
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.23 E-value=4.9e-11 Score=117.03 Aligned_cols=112 Identities=22% Similarity=0.275 Sum_probs=74.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceee-eeeEEEEeeccchhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK-STGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.+|+++|..|+|||||+++++... ... ++.+ |+. .....+.. ++...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~---------~~~~-------t~~~~~~~~~~~--------------~~~~~ 49 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVE---------KYDP-------TIEDSYRKQIEV--------------DGQQC 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCc---------ccCC-------chhhhEEEEEEE--------------CCEEE
Confidence 479999999999999999996432 111 0001 110 00011111 12356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH----cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~~p~ilviNKiD~~ 163 (832)
.+.||||||+.+|.......++.+|++++|+|.++..+......| ..+. ..++|+++++||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 788999999999988888889999999999999875443332222 2222 2368999999999976
No 201
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.23 E-value=5.3e-11 Score=117.47 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=75.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|..|+|||||+++|+...- .. .+.+ .-|++... ..+.. +++...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~--~~---------~~~~---t~~~~~~~--~~~~~--------------~~~~~~ 51 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF--TS---------AFVS---TVGIDFKV--KTVFR--------------NDKRVK 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CC---------CCCC---ceeeEEEE--EEEEE--------------CCEEEE
Confidence 4799999999999999999954321 00 0000 00111111 11111 123578
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---CCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~~p~ilviNKiD~~ 163 (832)
+.+|||||+.+|.......++.+|++++|+|.++....+...-| +.+.. ...|+++++||+|+.
T Consensus 52 ~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 52 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 99999999999998888999999999999999875443332222 22222 356889999999986
No 202
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.23 E-value=5e-11 Score=116.77 Aligned_cols=109 Identities=25% Similarity=0.253 Sum_probs=74.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
.|+++|..|+|||||+++|....-. ...+ ..|.++ ..+.+. ..+.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~------------~~~~---t~~~~~----~~~~~~---------------~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV------------TTIP---TVGFNV----EMLQLE---------------KHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc------------cccC---ccCcce----EEEEeC---------------CceEE
Confidence 4789999999999999999543210 0000 011111 112221 25789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHHH----cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
+++||||+..|...+...++.+|++|+|+|+.+...... ...+.... ..+.|+++++||+|+.
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 999999999998888888999999999999988642222 11222221 2578999999999986
No 203
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.23 E-value=5.3e-11 Score=117.87 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=76.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCCceE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+|+++|.+|+|||||+++|....- .. .+.+ |+... ...+.+. +....
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~~---------~~~~-------t~~~~~~~~~~~~--------------~~~~~ 50 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--IE---------SYDP-------TIEDSYRKQVEID--------------GRQCD 50 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc---------ccCC-------cchheEEEEEEEC--------------CEEEE
Confidence 699999999999999999953321 10 0011 11111 1112221 23568
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-----HHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-----~~~~~~~~p~ilviNKiD~~ 163 (832)
+.+|||||+.+|.......++.+|++++|+|.++....+...-| +.....++|+++++||+|+.
T Consensus 51 ~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 51 LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 89999999999999999999999999999999875444333222 22224578999999999986
No 204
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.23 E-value=5.3e-11 Score=131.40 Aligned_cols=115 Identities=25% Similarity=0.277 Sum_probs=75.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|++|+|||||+++|.... .+..... +.|.+.....+.+. ++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~---------------~tT~d~~~~~i~~~---------------~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQL---------------FATLDPTTRRLDLP---------------DG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCC---------------ccccCCEEEEEEeC---------------CC
Confidence 45689999999999999999996543 1111111 22333333334442 24
Q ss_pred eEEEEEeCCCCC-CcH-------HHHHHHhhccCcEEEEEcCCCccchhHH----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHV-DFS-------SEVTAALRITDGALVVVDCIEGVCVQTE----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~-df~-------~~~~~~l~~~D~ailVvda~~g~~~qt~----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+.|+||||.. ++. ..+...++.||++++|+|+++....... .++..+...+.|+++|+||+|+.
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 689999999972 211 1233457889999999999986544332 23333333478999999999986
No 205
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.22 E-value=8.3e-11 Score=116.08 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=75.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|..|+|||||+++++... ... .+..... ........+. .+...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~------~~~~t~~-------~~~~~~~~~~----------------~~~~~ 50 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRE------SYIPTIE-------DTYRQVISCS----------------KNICT 50 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCC------CcCCcch-------heEEEEEEEC----------------CEEEE
Confidence 468999999999999999996432 100 0000000 0001111111 13578
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc------CCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG------ERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~------~~~p~ilviNKiD~~ 163 (832)
++++||||+.+|......+++.+|++|+|+|.++..+.... ..+..+.. .++|++++.||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 51 LQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 99999999999998888889999999999999886655432 22332222 468999999999986
No 206
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.22 E-value=1.2e-10 Score=116.20 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=76.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|..|+|||||+.+|.... . .++.+ |+......+.+. ..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~--~----------~~~~~-------t~~~~~~~~~~~----------------~~ 57 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGE--S----------VTTIP-------TIGFNVETVTYK----------------NI 57 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC--C----------CCcCC-------ccccceEEEEEC----------------CE
Confidence 3689999999999999999994211 1 11111 222211222232 67
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccch-hHHHHHHHHHc----CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~-qt~~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
.+.++||||+..|.......++.+|++|+|+|+++.... .....|..... .+.|++|++||+|+.
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 899999999999998888889999999999999874322 22333333322 357899999999986
No 207
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.22 E-value=7.4e-11 Score=120.41 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=77.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|..|+|||||+++|+...- . + .+. ..+++......+.+. +..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~--~----~-----~~~-----~t~~~~~~~~~~~~~--------------~~~ 54 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF--S----G-----SYI-----TTIGVDFKIRTVEIN--------------GER 54 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--C----C-----CcC-----ccccceeEEEEEEEC--------------CEE
Confidence 457999999999999999999954321 0 0 000 001111111222221 234
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH--cCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
..+.||||||+..|.......++.+|++++|+|+++.-+.+....| .... ....|+++|+||+|+.
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 6789999999999998888999999999999999886544433323 2222 2357889999999986
No 208
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.22 E-value=6.9e-11 Score=116.46 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=77.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|.+++|||||+++|+...-... + ...++.......+.+. +...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~-----~~t~~~~~~~~~~~~~--------------~~~~ 52 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD-----------S-----KSTIGVEFATRSIQID--------------GKTI 52 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-----------C-----CCccceEEEEEEEEEC--------------CEEE
Confidence 35899999999999999999954321100 0 0111222222222222 2246
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
.+.++||||+..|.......++.+|++|+|+|+++....+...-| ..+. ..++|+++++||+|+.
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 789999999999988888899999999999999875444332222 2222 2357888999999976
No 209
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.21 E-value=6.7e-11 Score=120.56 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=71.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+|+|..|+|||||+++++...- .. .+.+ .++.......+.+. ++.+.+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f--~~---------~~~p-----t~~~~~~~~~i~~~--------------~~~~~l 51 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF--PE---------EYIP-----TEHRRLYRPAVVLS--------------GRVYDL 51 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC--Cc---------ccCC-----ccccccceeEEEEC--------------CEEEEE
Confidence 789999999999999999954321 00 0011 01111111112222 235788
Q ss_pred EEEeCCCCCCcHH----H----HHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH------cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSS----E----VTAALRITDGALVVVDCIEGVCVQTETVL-RQAL------GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~----~----~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~------~~~~p~ilviNKiD~~ 163 (832)
+||||||+.+|.. + ...+++.+|++|+|+|+++..+.+....| +.+. ..++|++++.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 9999999876521 2 34567899999999999986555433333 2222 2468999999999986
No 210
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.21 E-value=1.4e-10 Score=116.50 Aligned_cols=111 Identities=20% Similarity=0.134 Sum_probs=76.1
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|..++|||||+.+|... ... .+.+ |+......+.+. +
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~--~~~----------~~~p-------t~g~~~~~~~~~----------------~ 60 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLG--EIV----------TTIP-------TIGFNVETVEYK----------------N 60 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCc----------cccC-------CcceeEEEEEEC----------------C
Confidence 3468999999999999999999421 110 1111 111111223332 6
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHHH----cCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
..+++|||||+..|.......++.+|++|+|+|+++...... ...+.... ..+.|++|++||+|+.
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 789999999999998888888999999999999987533222 12222221 1367899999999987
No 211
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.21 E-value=7.8e-11 Score=119.43 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=75.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++|......... +.+ .+........+.+ ++....+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~----------~~~-----t~~~~~~~~~~~~--------------~~~~~~~ 52 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN----------FIA-----TVGIDFRNKVVTV--------------DGVKVKL 52 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC----------cCC-----cccceeEEEEEEE--------------CCEEEEE
Confidence 6899999999999999999543211110 000 0111111111122 1235789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
+||||||+..|.......++.+|++|+|+|+++..+.+....| ..+. ..++|+++++||+|+.
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 53 QIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 9999999999988888889999999999999875443322222 2222 2467899999999985
No 212
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=8.7e-11 Score=114.08 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=89.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+-..+|.++|..|+|||.|+-++ .+ |..+++...-|.++....++.. +++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf-----------~~-----~~f~e~~~sTIGVDf~~rt~e~--------------~gk 56 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRF-----------KD-----DTFTESYISTIGVDFKIRTVEL--------------DGK 56 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhh-----------cc-----CCcchhhcceeeeEEEEEEeee--------------cce
Confidence 34578999999999999999888 22 3344444444555555555544 356
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHH-HH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~-~~---~~~~p~ilviNKiD~~ 163 (832)
..++.+|||.|+++|...+.+..|.|+|+|+|.|.++--+......|-+ +. ..++|.++|.||+|+.
T Consensus 57 ~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 57 TIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred EEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 7899999999999999999999999999999999998666666555522 22 3467999999999986
No 213
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.21 E-value=6.6e-11 Score=119.83 Aligned_cols=111 Identities=16% Similarity=0.276 Sum_probs=74.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCCceE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+|+++|..|+|||||+++|+... .... +.+ |+... .....+. +....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~~---------~~~-------t~~~~~~~~~~~~--------------~~~~~ 48 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVET---------YDP-------TIEDSYRKQVVVD--------------GQPCM 48 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcc---------CCC-------chHhhEEEEEEEC--------------CEEEE
Confidence 48999999999999999996432 1110 000 11000 0111111 22467
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH------cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL------GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~------~~~~p~ilviNKiD~~ 163 (832)
++||||||+.+|.......++.+|++|+|+|.++..+......| ..+. ..+.|+++++||+|+.
T Consensus 49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 89999999999998888999999999999999876544432222 2222 1467899999999986
No 214
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.20 E-value=2e-10 Score=116.58 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=76.5
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
....++|+++|+.|+|||||+++|+..... .. + ....|.|...... .+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~-~~-------~------~~~~~~t~~~~~~--~~---------------- 68 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNL-AR-------T------SKTPGRTQLINFF--EV---------------- 68 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-cc-------c------cCCCCceeEEEEE--ec----------------
Confidence 346789999999999999999999653210 00 0 0111233332211 11
Q ss_pred CceEEEEEeCCCCCC----------cHHHHHHHhh---ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCc
Q 003305 96 NEYLINLIDSPGHVD----------FSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~d----------f~~~~~~~l~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~ 162 (832)
+..+.||||||+.. +...+...++ .++++++|+|+..+.......+++.+...++|+++++||+|+
T Consensus 69 -~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl 147 (196)
T PRK00454 69 -NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADK 147 (196)
T ss_pred -CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECccc
Confidence 35799999999632 2223333444 446788999998887776666667777788999999999997
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 148 ~ 148 (196)
T PRK00454 148 L 148 (196)
T ss_pred C
Confidence 6
No 215
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.20 E-value=2.1e-10 Score=116.83 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=79.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+||+++|++|+|||||+|+|++........ ...+.|.........+. +..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~--------------~~~~~T~~~~~~~~~~~----------------~~~ 50 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL--------------SASSVTKTCQKESAVWD----------------GRR 50 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc--------------CCCCcccccceeeEEEC----------------CeE
Confidence 589999999999999999997654332220 12244555444445554 789
Q ss_pred EEEEeCCCCCCcH-------HHHHHHh----hccCcEEEEEcCCCccchhHHHHHHHHHcC-C----CCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFS-------SEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~-------~~~~~~l----~~~D~ailVvda~~g~~~qt~~~~~~~~~~-~----~p~ilviNKiD~~ 163 (832)
+++|||||..++. .++.+.+ ...|++++|+|+.. .......+++.+.+. + .++++++|+.|..
T Consensus 51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 9999999988752 2333332 45799999999987 777777777665442 2 4778999999977
No 216
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.20 E-value=8.9e-11 Score=116.66 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=74.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++++... ... .+. -|+........+. .++....+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~~---------~~~-------~t~~~~~~~~~~~------------~~~~~~~l 51 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FDK---------NYK-------ATIGVDFEMERFE------------ILGVPFSL 51 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC---------CCC-------CceeeEEEEEEEE------------ECCEEEEE
Confidence 58999999999999999996532 100 000 1222221111111 11235789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHHcC----CCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE----RIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~~~----~~p~ilviNKiD~~ 163 (832)
+||||||+.+|.......++.+|++++|+|+++........-|. ...+. ..|+++|.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 52 QLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 99999999999988888999999999999998744443333332 22222 24578899999975
No 217
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.20 E-value=1.1e-10 Score=114.76 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=76.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee--EEEEeeccchhhccccCcCCCCce
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+|+++|..|+|||||+++|......... +.. .|+.... ..+.+. ++...
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~--------------~~~--~t~~~~~~~~~~~~~-------------~~~~~ 52 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK--------------NYL--MTTGCDFVVKEVPVD-------------TDNTV 52 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--------------cCC--CceEEEEEEEEEEeC-------------CCCEE
Confidence 7899999999999999999643211111 000 1111111 111111 22467
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc--CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+..|.......++.+|++++|+|.++.........| ..... .+.|+++++||+|+.
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 53 ELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 899999999998888888899999999999999875444332223 22222 358999999999985
No 218
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.20 E-value=9.1e-11 Score=116.85 Aligned_cols=112 Identities=20% Similarity=0.282 Sum_probs=77.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.+|+++|..|+|||||+.+++... ... .+. .|+.... ..+.+ ++...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~--f~~---------~~~-------~t~~~~~~~~~~~--------------~~~~~ 50 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS--FPD---------YHD-------PTIEDAYKQQARI--------------DNEPA 50 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCC---------CcC-------CcccceEEEEEEE--------------CCEEE
Confidence 479999999999999999996432 111 000 0111100 01112 12357
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-----HHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-----~~~~~~~~p~ilviNKiD~~ 163 (832)
.++||||||..+|......+++.+|++|+|+|.++..+.+...-| +.....++|+++|+||+|+.
T Consensus 51 ~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred EEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 899999999999998888999999999999999987766654322 22223468999999999975
No 219
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.19 E-value=2.2e-10 Score=115.49 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=75.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEE-EEeeccchhhccccCcCCCCceE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGIS-LYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+|+++|..|+|||||+++|+...- .. ++. -|+...... .... +++...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~--~~---------~~~-------~t~~~~~~~~i~~~-------------~~~~~~ 50 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF--PE---------EYV-------PTVFENYVTNIQGP-------------NGKIIE 50 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC--CC---------CCC-------CeeeeeeEEEEEec-------------CCcEEE
Confidence 799999999999999999964321 00 000 011111111 1110 123568
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHH-HH--cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-AL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~-~~--~~~~p~ilviNKiD~~ 163 (832)
+.||||||+.+|.......++.+|++|+|+|+++..+.+... .|.. .. ..++|+++++||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 999999999999887777889999999999999865554432 2322 21 2468999999999986
No 220
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.19 E-value=1.4e-10 Score=116.09 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=77.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|..|+|||||++++....- ... + ...++.......+.+..... ......+...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~--~~~---------~-----~~t~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 63 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF--NPK---------F-----ITTVGIDFREKRVVYNSSGP----GGTLGRGQRI 63 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--Ccc---------C-----CCccceEEEEEEEEEcCccc----cccccCCCEE
Confidence 46899999999999999999954321 000 0 00011111111122210000 0000112457
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc----CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~----~~~p~ilviNKiD~~ 163 (832)
.+.||||||+..|.......++.+|++|+|+|+++.-+.+...-| ..... .+.|+++|.||+|+.
T Consensus 64 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 64 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 899999999999998888999999999999999875544443333 22222 356888999999986
No 221
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.18 E-value=2.8e-10 Score=119.18 Aligned_cols=123 Identities=23% Similarity=0.250 Sum_probs=78.4
Q ss_pred HHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhcc
Q 003305 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKS 88 (832)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (832)
|+++..-....++|.|.|++|+|||||+.++....-.+.. |.- +|-.....++.+
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~----------YPF------TTK~i~vGhfe~--------- 212 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP----------YPF------TTKGIHVGHFER--------- 212 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCC----------CCc------cccceeEeeeec---------
Confidence 3444333446899999999999999999999443322211 110 122222233433
Q ss_pred ccCcCCCCceEEEEEeCCCCCC--------cHHHHHHHhhc-cCcEEEEEcCCC--ccchhH-HHHHHHHH-cCCCCeEE
Q 003305 89 YKGERNGNEYLINLIDSPGHVD--------FSSEVTAALRI-TDGALVVVDCIE--GVCVQT-ETVLRQAL-GERIRPVL 155 (832)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~d--------f~~~~~~~l~~-~D~ailVvda~~--g~~~qt-~~~~~~~~-~~~~p~il 155 (832)
+...|.+|||||.-| ...+...|++. .+++++++|+++ |..... ..+|+.+. ....|+++
T Consensus 213 -------~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~ 285 (346)
T COG1084 213 -------GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVV 285 (346)
T ss_pred -------CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEE
Confidence 356999999999865 33456778875 466789999987 333222 23444444 34568889
Q ss_pred EEECCCcc
Q 003305 156 TVNKMDRC 163 (832)
Q Consensus 156 viNKiD~~ 163 (832)
|+||+|..
T Consensus 286 V~nK~D~~ 293 (346)
T COG1084 286 VINKIDIA 293 (346)
T ss_pred EEeccccc
Confidence 99999966
No 222
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.18 E-value=1.2e-10 Score=113.62 Aligned_cols=112 Identities=23% Similarity=0.315 Sum_probs=75.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|+.|+|||||+++|+... ... ...+. +-......+.+. +..+.+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~---------~~~~~------~~~~~~~~~~~~--------------~~~~~~ 49 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVE---------EYDPT------IEDSYRKTIVVD--------------GETYTL 49 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc---------CcCCC------hhHeEEEEEEEC--------------CEEEEE
Confidence 58999999999999999996543 111 00110 000111111121 125789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHHH----cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
+++||||+.++.......++.+|++++|+|.++...... ...+.... ..+.|+++++||+|+.
T Consensus 50 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 50 DILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred EEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 999999999999888899999999999999987433222 22333222 2468999999999987
No 223
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.18 E-value=1.6e-10 Score=119.79 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=79.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|..|+|||||+++++...- .. +. ..|+........+. .+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f--~~--------------~~--~~tig~~~~~~~~~------------~~~~ 60 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK--------------KY--EPTIGVEVHPLDFF------------TNCG 60 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC--CC--------------cc--CCccceeEEEEEEE------------ECCe
Confidence 3456999999999999999999854321 00 00 01221111111221 0123
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHH--cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~--~~~~p~ilviNKiD~~ 163 (832)
...+++|||||+.+|.......++.+|++|+|+|.++....+...-|. .+. ..++|+++|.||+|+.
T Consensus 61 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred EEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 578999999999999877777889999999999999876655544442 221 3468999999999985
No 224
>PLN03110 Rab GTPase; Provisional
Probab=99.17 E-value=1.5e-10 Score=119.69 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=80.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+...-.. ++ ...+.+......+.+. +.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-----------~~-----~~t~g~~~~~~~v~~~--------------~~ 59 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-----------ES-----KSTIGVEFATRTLQVE--------------GK 59 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC-----------CC-----CCceeEEEEEEEEEEC--------------CE
Confidence 345799999999999999999995432110 00 0111122111222222 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
...++||||||+..|.......++.+|++|+|+|.++....+...-| ..+. ..++|+++++||+|+.
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 57899999999999998888899999999999999876554443333 2222 2468999999999975
No 225
>PRK11058 GTPase HflX; Provisional
Probab=99.17 E-value=1.6e-10 Score=130.49 Aligned_cols=114 Identities=23% Similarity=0.193 Sum_probs=75.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+..|+++|.+|+|||||+|+|....... .|. -+.|.+.....+.+. +..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v----------~~~------~~tTld~~~~~i~l~---------------~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYA----------ADQ------LFATLDPTLRRIDVA---------------DVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceee----------ccC------CCCCcCCceEEEEeC---------------CCC
Confidence 4579999999999999999995432111 111 123444433344443 123
Q ss_pred EEEEEeCCCCCCc--------HHHHHHHhhccCcEEEEEcCCCccchhHH----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTE----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df--------~~~~~~~l~~~D~ailVvda~~g~~~qt~----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.|+||||.... ...+...++.+|++++|+|+++....... .++..+...++|+++|+||+|+.
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 7889999998442 12244567889999999999986543332 33444444578999999999986
No 226
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.17 E-value=1.8e-10 Score=119.07 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=74.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++|+...- . ..+. .-++.+.....+.+. +.....+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~--~---------~~~~-----~T~~~d~~~~~i~~~-------------~~~~~~~ 52 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF--G---------KSYK-----QTIGLDFFSKRVTLP-------------GNLNVTL 52 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--C---------CCCC-----CceeEEEEEEEEEeC-------------CCCEEEE
Confidence 689999999999999999954211 0 0000 111112111122221 1135789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc------CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~------~~~p~ilviNKiD~~ 163 (832)
+||||||+..|.......++.+|++|+|+|+++.........| ..+.. .+.|+++|.||+|+.
T Consensus 53 ~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 53 QVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 9999999999888888889999999999999875444433323 22222 234678899999986
No 227
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.17 E-value=2e-10 Score=118.70 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=76.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..++|||||+++|+...- .+.. -|+........+. .+.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f------------~~~~-------~Tig~~~~~~~~~----------------~~~l 46 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF------------KDTV-------STVGGAFYLKQWG----------------PYNI 46 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC------------CCCC-------CccceEEEEEEee----------------EEEE
Confidence 689999999999999999954321 0000 1222222222232 6789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHH-HHHHH---cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~-~~~~~---~~~~p~ilviNKiD~~ 163 (832)
.||||||+..|.......++.+|++|+|+|+++..+...... |..+. ..++|+|+|.||+|+.
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999888889999999999999998654444322 22222 2457899999999986
No 228
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.16 E-value=1.7e-10 Score=113.34 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=74.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceee-eeeEEEEeeccchhhccccCcCCCCceE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK-STGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+|+++|.+|+|||||+.+++... .... +.+ |+. .....+.. ++....
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~--~~~~---------~~~-------t~~~~~~~~~~~--------------~~~~~~ 50 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGT--FIEK---------YDP-------TIEDFYRKEIEV--------------DSSPSV 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC---------CCC-------chhheEEEEEEE--------------CCEEEE
Confidence 79999999999999999986421 1110 000 110 00111111 122567
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH----cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~~p~ilviNKiD~~ 163 (832)
++||||||+..|.......++.+|++++|+|.++..+.+....| ..+. ..++|+++++||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 88999999999988888889999999999999885543332222 2222 2468999999999975
No 229
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.16 E-value=1.4e-10 Score=118.15 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=77.1
Q ss_pred EeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEEEEe
Q 003305 25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLID 104 (832)
Q Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liD 104 (832)
+|..++|||||+.++++.. ... +...|+........+. .+++...++|||
T Consensus 1 vG~~~vGKTsLi~r~~~~~--f~~----------------~~~~Tig~~~~~~~~~------------~~~~~~~l~iwD 50 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE--FEK----------------KYVATLGVEVHPLVFH------------TNRGPIRFNVWD 50 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC--CCC----------------CCCCceeEEEEEEEEE------------ECCEEEEEEEEE
Confidence 5899999999999995321 110 0112333222222222 122467999999
Q ss_pred CCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHH-HHc--CCCCeEEEEECCCcc
Q 003305 105 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 105 TPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~-~~~--~~~p~ilviNKiD~~ 163 (832)
|||+.+|.......++.+|++|+|+|+++..+.+....|.. +.+ .++|+++|.||+|+.
T Consensus 51 t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 51 TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99999999988899999999999999999877665555533 332 468999999999975
No 230
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.16 E-value=3.1e-10 Score=114.66 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=80.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|..++|||||+.++.... ... +....++.......+..+ +.
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~--~~~--------------~~~~t~~~~~~~~~i~~~--------------~~ 53 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGS--TES--------------PYGYNMGIDYKTTTILLD--------------GR 53 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC--CCC--------------CCCCcceeEEEEEEEEEC--------------CE
Confidence 345799999999999999999995421 100 000111222111222221 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH--cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
...++||||||+.+|.......++.+|++|||+|.++..+.+...-| ..+. ..+.|+||+.||+|+.
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 57899999999999998888888999999999999986655544333 2232 2467899999999986
No 231
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.16 E-value=3.7e-10 Score=126.09 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=76.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+-.|+|+|.+|+|||||+++|......++ ++ .+.|.......+.+. +..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs----------~~------p~TT~~p~~Giv~~~---------------~~~ 207 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVA----------DY------PFTTLVPNLGVVRVD---------------DER 207 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCccccc----------CC------CCCccCcEEEEEEeC---------------CCc
Confidence 45799999999999999999965432111 11 123444444444443 134
Q ss_pred EEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCC----ccchhHHHHHHHHHc-----CCCCeEEEEECCCc
Q 003305 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE----GVCVQTETVLRQALG-----ERIRPVLTVNKMDR 162 (832)
Q Consensus 99 ~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~----g~~~qt~~~~~~~~~-----~~~p~ilviNKiD~ 162 (832)
.+.|+||||..+ +...+.+.+..+|++++|||++. ....+...+++.+.. .+.|.++|+||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 699999999764 44566788999999999999872 122222333344433 35799999999997
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 288 ~ 288 (390)
T PRK12298 288 L 288 (390)
T ss_pred C
Confidence 6
No 232
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.14 E-value=2.9e-10 Score=115.24 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=74.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeE--EEEeeccchhhccccCcCCCCce
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI--SLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+|+++|..|+|||||+++|+...-.... +. -|+..... .+.. ++...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~----------~~-------~t~~~~~~~~~~~~--------------~~~~~ 50 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP----------YQ-------NTIGAAFVAKRMVV--------------GERVV 50 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC----------cc-------cceeeEEEEEEEEE--------------CCEEE
Confidence 6899999999999999999653211000 00 02211111 1122 22356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc--CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
.+++|||||..+|.......++.+|++++|+|+++....+....| ..+.. .+.|+++|+||+|+.
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 788999999998877777788899999999999876444332222 33322 368999999999975
No 233
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.14 E-value=2e-10 Score=114.69 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=76.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.+|+++|..|+|||||+.++++.. ... ++.+ |+.... ..+.+ +++.+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~---------~~~p-------t~~~~~~~~~~~--------------~~~~~ 49 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPS---------EYVP-------TVFDNYAVTVMI--------------GGEPY 49 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC---------CCCC-------ceeeeeEEEEEE--------------CCEEE
Confidence 479999999999999999996422 110 1111 211111 11122 12357
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHH-HHH--cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~-~~~--~~~~p~ilviNKiD~~ 163 (832)
.++||||||+.+|.......++.+|++|+|+|.++..+.+.. ..|. .+. ..++|++++.||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 50 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred EEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 899999999999987777789999999999999886555443 2342 222 2367999999999976
No 234
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.14 E-value=2.3e-10 Score=115.00 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=74.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|..|+|||||+.++... .. .++.+ |+......+.+. +..
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~--~~----------~~~~~-------T~~~~~~~~~~~----------------~~~ 62 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLG--EV----------VTTIP-------TIGFNVETVEYK----------------NLK 62 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Cc----------cccCC-------ccccceEEEEEC----------------CEE
Confidence 58999999999999999999421 11 01111 111111122232 688
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchh-HHHHHHHHHc----CCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~q-t~~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
+++|||||+..|.......++.+|++|+|+|+++.-... ....+..... .+.|++|++||.|+.
T Consensus 63 ~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 63 FTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 999999999999888888999999999999998632211 1222322222 357899999999986
No 235
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.14 E-value=1.8e-10 Score=114.49 Aligned_cols=109 Identities=23% Similarity=0.230 Sum_probs=68.5
Q ss_pred EEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEEEE
Q 003305 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (832)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (832)
++|+.|+|||||+++|......+.. ..+.|+......+.+. .+..+++|
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~---------------~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVAN----------------YPFTTLEPNLGVVEVP---------------DGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccC----------------CCceeecCcceEEEcC---------------CCCeEEEE
Confidence 5899999999999999554211110 1122333322223231 15689999
Q ss_pred eCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCcc------chhHHHHH-HHHH----------cCCCCeEEEEEC
Q 003305 104 DSPGHVD-------FSSEVTAALRITDGALVVVDCIEGV------CVQTETVL-RQAL----------GERIRPVLTVNK 159 (832)
Q Consensus 104 DTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g~------~~qt~~~~-~~~~----------~~~~p~ilviNK 159 (832)
||||+.+ +.......++.+|++++|+|+.+.. .......| ..+. ..+.|+++++||
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 129 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNK 129 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEc
Confidence 9999843 2334566788899999999998762 22221222 2221 146899999999
Q ss_pred CCcc
Q 003305 160 MDRC 163 (832)
Q Consensus 160 iD~~ 163 (832)
+|+.
T Consensus 130 ~Dl~ 133 (176)
T cd01881 130 IDLD 133 (176)
T ss_pred hhcC
Confidence 9986
No 236
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.14 E-value=1.4e-10 Score=115.22 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=74.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCCceE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+|+++|+.|+|||||+++++...- ... +.+ |+... ...+.+ ++..+.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~~---------~~~-------t~~~~~~~~~~~--------------~~~~~~ 49 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PEE---------YVP-------TVFDHYAVSVTV--------------GGKQYL 49 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCC---------CCC-------ceeeeeEEEEEE--------------CCEEEE
Confidence 789999999999999999965321 110 000 11100 011112 123567
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHH--cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
+++|||||+.+|.......++.+|++++|+|.++.-..+... .| .... ..+.|+++++||+|+.
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 50 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 899999999999877777889999999999998865544331 22 2221 4578999999999976
No 237
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.13 E-value=1.3e-10 Score=108.05 Aligned_cols=113 Identities=22% Similarity=0.254 Sum_probs=72.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|.|+|+.|+|||||+++|+..... +....+...+.++......... ....+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 52 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVIVVDG----------------DRQSL 52 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETT----------------EEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEEEecC----------------CceEE
Confidence 5899999999999999999765432 0000111112233322222222 24568
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHH---HHHHH--cCCCCeEEEEECCC
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETV---LRQAL--GERIRPVLTVNKMD 161 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~---~~~~~--~~~~p~ilviNKiD 161 (832)
.++|++|...+.......+..+|++++|+|+++.-+.+. ..+ +.... ..++|++++.||.|
T Consensus 53 ~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 53 QFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999998888776666999999999999998543332 222 12222 24589999999998
No 238
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.13 E-value=3.6e-10 Score=123.79 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=77.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
-+..|+++|.+|||||||+++|......+. ++. +.|.......+.+. +.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va----------~yp------fTT~~p~~G~v~~~---------------~~ 205 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIA----------DYP------FTTLHPNLGVVRVD---------------DY 205 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccC----------CCC------CceeCceEEEEEeC---------------CC
Confidence 367899999999999999999965322211 110 23444444444442 24
Q ss_pred eEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc-----CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~-----~~~p~ilviNKiD~~ 163 (832)
..+.++||||..+ +.....+.+..+|++|+|+|+++.-..+....| ..+.. .+.|.++|+||+|+.
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 6799999999753 445667778889999999999864333333333 22322 367999999999986
No 239
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.13 E-value=3.5e-10 Score=112.47 Aligned_cols=110 Identities=17% Similarity=0.129 Sum_probs=73.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCCCceEE
Q 003305 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
|+|+|..|+|||||+++++...- .. .+.+ |+.... ..+.+ +++...+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~---------~~~~-------~~~~~~~~~~~~--------------~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PE---------DYVP-------TVFENYSADVEV--------------DGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CC---------CCCC-------cEEeeeeEEEEE--------------CCEEEEE
Confidence 58999999999999999965321 11 0000 111110 11111 1235679
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHH-HHHH--cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
.+|||||+.+|.......++.+|++|+|+|.++.-+.+.. ..| .... ..+.|+++++||+|+.
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 9999999999987777788999999999999875444332 122 2222 2378999999999986
No 240
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.13 E-value=1.9e-10 Score=116.42 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=75.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeE-EEEeeccchhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI-SLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
++|+++|..|+|||||+.+|+... ... .+. -|+..... .... +++..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~--~~~---------~~~-------~t~~~~~~~~i~~--------------~~~~~ 48 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY--FPQ---------VYE-------PTVFENYVHDIFV--------------DGLHI 48 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCC---------ccC-------CcceeeeEEEEEE--------------CCEEE
Confidence 589999999999999999995421 100 000 01111111 0111 12357
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHHc--CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
.++||||||+.+|.......++.+|++|+|+|.++-...+... .| ..+.. .+.|+++|.||+|+.
T Consensus 49 ~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~ 117 (189)
T cd04134 49 ELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLR 117 (189)
T ss_pred EEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 8999999999998776667788999999999998865554432 22 23322 367999999999987
No 241
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.12 E-value=3.3e-10 Score=112.44 Aligned_cols=116 Identities=19% Similarity=0.095 Sum_probs=76.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee--EEEEeeccchhhccccCcCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (832)
.+..+|+++|..|+|||||+++++... ... ..+.+ |+.... ..+.+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~~--------~~~~~-------T~~~~~~~~~~~~~-------------- 50 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FSL--------NAYSP-------TIKPRYAVNTVEVY-------------- 50 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CCc--------ccCCC-------ccCcceEEEEEEEC--------------
Confidence 356899999999999999999995422 110 01111 111111 112221
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHH-cCCCCeEEEEECCCcc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-GERIRPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~-~~~~p~ilviNKiD~~ 163 (832)
+....+.++||+|...|.......++.+|++++|+|+++..+.+.. ..++... ..++|+++|+||+|+.
T Consensus 51 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 51 GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 2346788999999999887777788999999999999875433322 2223321 2368999999999985
No 242
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.12 E-value=5.1e-10 Score=112.55 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=73.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee--EEEEeeccchhhccccCcCCCCce
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+|+++|..++|||||+.+++...- .. ++.+ |+.... ..+.. ++...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f--~~---------~~~~-------T~g~~~~~~~i~~--------------~~~~~ 49 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--DE---------DYIQ-------TLGVNFMEKTISI--------------RGTEI 49 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC---------CCCC-------ccceEEEEEEEEE--------------CCEEE
Confidence 689999999999999999955311 00 0111 221111 11222 12357
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc--CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
.+.+|||+|+..|.......++.+|++++|+|+++..+.+...-| ..+.. ...++++++||+|+.
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~ 117 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLF 117 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 899999999999988888889999999999999886554443223 23322 222347899999985
No 243
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.12 E-value=2e-10 Score=113.62 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=73.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++|+...-.... .. ...........+ .+....+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~--~~---------------~~~~~~~~~~~~--------------~~~~~~l 50 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEY--VP---------------TVFDNYSATVTV--------------DGKQVNL 50 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC--CC---------------ceeeeeEEEEEE--------------CCEEEEE
Confidence 7899999999999999999654310000 00 000000111111 1236789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHH-HHHH--cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
.+|||||+.+|.......++.+|++++|+|+++..+.+.. ..| .... ..+.|+++++||+|+.
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence 9999999998876666677899999999999875443332 222 2222 2358999999999987
No 244
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.12 E-value=2.3e-10 Score=109.23 Aligned_cols=110 Identities=24% Similarity=0.257 Sum_probs=77.1
Q ss_pred EEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEEEE
Q 003305 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (832)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (832)
++|+.|+|||||+++|......... +..|. .......+. .......+.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-----------------~~~t~-~~~~~~~~~------------~~~~~~~~~l~ 50 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-----------------YETTI-IDFYSKTIE------------VDGKKVKLQIW 50 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-----------------cccch-hheeeEEEE------------ECCEEEEEEEE
Confidence 5899999999999999665431000 00111 111111111 01125789999
Q ss_pred eCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-----HHHHcCCCCeEEEEECCCcc
Q 003305 104 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 104 DTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-----~~~~~~~~p~ilviNKiD~~ 163 (832)
||||+.++.......++.+|++++|+|+..+........| ......+.|+++++||+|+.
T Consensus 51 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 51 DTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred ecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 9999999988888899999999999999987666555433 33445678999999999987
No 245
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.12 E-value=6.3e-10 Score=111.79 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=77.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCCCc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
..+|+++|..++|||||+.+++...- .. ++.+ |+.... ..+.. +++.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~---------~~~p-------T~~~~~~~~~~~--------------~~~~ 52 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PE---------NYVP-------TVFENYTASFEI--------------DTQR 52 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CC---------ccCC-------ceeeeeEEEEEE--------------CCEE
Confidence 45899999999999999999965321 00 0111 221111 11111 2246
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHH-HHHc--CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~-~~~~--~~~p~ilviNKiD~~ 163 (832)
..+.||||+|...|.......++.+|++|||+|.++..+.+.. ..|. .+.. .+.|++||.||+|+.
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 7899999999999988888889999999999999887655543 3342 2222 367899999999975
No 246
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.12 E-value=5.1e-10 Score=112.10 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=76.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCCCceE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+|+++|..++|||||+.+++...- . .++.+ |+.... ..+.. +++...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f--~---------~~~~~-------t~~~~~~~~~~~--------------~~~~~~ 50 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY--P---------ETYVP-------TVFENYTASFEI--------------DEQRIE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--C---------CCcCC-------ceEEEEEEEEEE--------------CCEEEE
Confidence 799999999999999999954321 0 01111 221111 11111 223678
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHH-HHH--cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLR-QAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~-~~~--~~~~p~ilviNKiD~~ 163 (832)
++||||||+..|.......++.+|++|+|+|.++..+.+. ..-|. .+. ..+.|+++|.||+|+.
T Consensus 51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 9999999999998777788899999999999988665554 23342 222 2367899999999985
No 247
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.12 E-value=3.5e-10 Score=116.51 Aligned_cols=115 Identities=20% Similarity=0.156 Sum_probs=74.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|..|+|||||+++|+...-... +. ..++.+.....+.+. ++....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-----------~~-----~ti~~d~~~~~i~~~-------------~~~~~~ 53 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-----------SD-----PTVGVDFFSRLIEIE-------------PGVRIK 53 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-----------CC-----ceeceEEEEEEEEEC-------------CCCEEE
Confidence 5899999999999999999965321100 00 011111111111121 123578
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH----cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~~p~ilviNKiD~~ 163 (832)
++++||||+..|.......++.+|++|+|+|.++..+.....-| ..+. ....|++++.||+|+.
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 54 LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred EEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 99999999999988888889999999999999875433332222 2222 2245677899999986
No 248
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.12 E-value=3.7e-10 Score=112.75 Aligned_cols=112 Identities=23% Similarity=0.279 Sum_probs=81.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
++..+|.++|..|||||||+++|.. +... +..| |+......+.+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~----------~~~p-------T~g~~~~~i~~~---------------- 56 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEIS----------ETIP-------TIGFNIEEIKYK---------------- 56 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEE----------EEEE-------ESSEEEEEEEET----------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--cccc----------ccCc-------ccccccceeeeC----------------
Confidence 5667999999999999999999942 1111 1111 333333444454
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccc-hhHHHHHHHHH----cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTETVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~-~qt~~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
++.++++|.+|+..+...+...+..+|++|+|||+++.-. ......+..+. ..++|+++++||+|+.
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred cEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccccc
Confidence 7899999999999998888889999999999999997432 22333333332 2468999999999988
No 249
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.11 E-value=7.6e-10 Score=121.16 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=74.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
-+..|+++|.+|+|||||+++|......+. ++. ..|.......+.+. +.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va----------~y~------fTT~~p~ig~v~~~---------------~~ 204 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIA----------DYP------FTTLVPNLGVVRVD---------------DG 204 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCcccc----------CCC------CCccCCEEEEEEeC---------------Cc
Confidence 467899999999999999999955322111 110 12333333333343 13
Q ss_pred eEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCc---cchhHHHHH-HHHHc-----CCCCeEEEEECCC
Q 003305 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCVQTETVL-RQALG-----ERIRPVLTVNKMD 161 (832)
Q Consensus 98 ~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g---~~~qt~~~~-~~~~~-----~~~p~ilviNKiD 161 (832)
..+.|+||||+.+ +.....+.+..+|++++|+|+++. ...+....| +++.. .+.|.++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 7899999999863 344566777789999999999864 122222222 22222 3679999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 285 L~ 286 (329)
T TIGR02729 285 LL 286 (329)
T ss_pred CC
Confidence 86
No 250
>PLN03108 Rab family protein; Provisional
Probab=99.11 E-value=7.7e-10 Score=113.90 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=77.4
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+...-... +.+ .-|.+.... .+.+. +..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~-----------~~~---ti~~~~~~~--~i~~~--------------~~~ 54 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------HDL---TIGVEFGAR--MITID--------------NKP 54 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------CCC---CccceEEEE--EEEEC--------------CEE
Confidence 357999999999999999999954321100 000 001111111 12221 235
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHH---cCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~---~~~~p~ilviNKiD~~ 163 (832)
..+++|||||+.+|.......++.+|++|+|+|+++....+...-|. .+. ....|++++.||+|+.
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 67899999999999988888999999999999998755444332232 122 2367899999999986
No 251
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.11 E-value=4.4e-10 Score=113.52 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=75.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++|+...-. . .+.+ .-|.+... ..+.+ +++...+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~--~---------~~~~---t~~~~~~~--~~~~~--------------~~~~~~~ 51 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFS--E---------STKS---TIGVDFKI--KTVYI--------------ENKIIKL 51 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C---------CCCC---ceeeEEEE--EEEEE--------------CCEEEEE
Confidence 7999999999999999999532210 0 0000 00111111 11222 1235688
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
.+|||||+.+|.......++.+|++|+|+|+++.-+......| .... ....|+++++||+|+.
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 9999999999998889999999999999999876544433333 2222 2356889999999976
No 252
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.11 E-value=7e-10 Score=110.80 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=77.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|..++|||||+.+++... ... ++. .|+.... ...+. .+++..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~--f~~---------~~~-------~Ti~~~~-~~~~~------------~~~~~v~ 50 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK--FPT---------DYI-------PTVFDNF-SANVS------------VDGNTVN 50 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC--CCC---------CCC-------Ccceeee-EEEEE------------ECCEEEE
Confidence 479999999999999999995421 111 011 1221111 01111 1234688
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHH-HHHH--cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
++||||+|+.+|.......++.+|++|||+|.++..+.+.. ..| ..+. ..+.|++||.||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 51 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred EEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 99999999999998888899999999999999986665543 233 3232 2468899999999985
No 253
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2e-11 Score=130.78 Aligned_cols=130 Identities=32% Similarity=0.386 Sum_probs=103.6
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccC------------C---ceEeecCcccccccCceeeeeeEEEEe
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA------------G---DVRMTDTRADEAERGITIKSTGISLYY 79 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~------------g---~~~~~d~~~~E~~rgiTi~~~~~~~~~ 79 (832)
.....+||+++||.++||||+.. +.+|.++.+.. | ..+++|....|++||++|..+...+..
T Consensus 3 ~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t 79 (391)
T KOG0052|consen 3 KEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 79 (391)
T ss_pred CcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccc
Confidence 33456799999999999999987 66666655311 1 146899999999999987665544433
Q ss_pred eccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-------cchhHHHHHHHHHcCCC-
Q 003305 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI- 151 (832)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~~- 151 (832)
..+.+++||.|||.||...+..+.+++|+|+++|.+.-| ...||+++...+...++
T Consensus 80 ----------------~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~ 143 (391)
T KOG0052|consen 80 ----------------SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 143 (391)
T ss_pred ----------------eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccce
Confidence 378999999999999999999999999999999988332 35789988888878876
Q ss_pred CeEEEEECCCcc
Q 003305 152 RPVLTVNKMDRC 163 (832)
Q Consensus 152 p~ilviNKiD~~ 163 (832)
++++.+||||..
T Consensus 144 qliv~v~k~D~~ 155 (391)
T KOG0052|consen 144 QLIVGVNKMDST 155 (391)
T ss_pred eeeEEeeccccc
Confidence 577899999965
No 254
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.09 E-value=6.2e-10 Score=117.25 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=74.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceee-eeeEEEEeeccchhhccccCcCCCCceE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK-STGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+|+++|..|+|||||+++++... ... .+.+ |+. .....+.+ +++.+.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~--f~~---------~y~p-------Ti~d~~~k~~~i--------------~~~~~~ 49 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR--FEE---------QYTP-------TIEDFHRKLYSI--------------RGEVYQ 49 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--CCC---------CCCC-------ChhHhEEEEEEE--------------CCEEEE
Confidence 68999999999999999996421 110 0000 111 01111111 123578
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHHc------------CCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG------------ERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~~------------~~~p~ilviNKiD~~ 163 (832)
++||||||+.+|......+++.+|++|+|+|.++..+.+... .+..+.. .++|+|+++||+|+.
T Consensus 50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 999999999999877677788999999999999765444322 2222221 367999999999986
No 255
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.09 E-value=1.6e-09 Score=115.89 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=77.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.||+++|+.|+|||||+++|+...-.... +. .+.......+.+++......+... +...+
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~---~~---~~~~~~~~~~T~~i~~~~~~i~~~--------------g~~~~ 64 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSD---YP---PDPAEEHIDKTVEIKSSKAEIEEN--------------GVKLK 64 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCcccc---CC---CCccccccCCceEEEEEEEEEEEC--------------CEEEE
Confidence 58999999999999999999654322111 00 000111122222333322222221 22468
Q ss_pred EEEEeCCCCCCcHHH---------------------HHHHhh-------ccCcEEEEEcCCC-ccchhHHHHHHHHHcCC
Q 003305 100 INLIDSPGHVDFSSE---------------------VTAALR-------ITDGALVVVDCIE-GVCVQTETVLRQALGER 150 (832)
Q Consensus 100 i~liDTPGh~df~~~---------------------~~~~l~-------~~D~ailVvda~~-g~~~qt~~~~~~~~~~~ 150 (832)
+++|||||..|+... .....+ .+|++++++++.. ++......+++.+.. +
T Consensus 65 l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~ 143 (276)
T cd01850 65 LTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-R 143 (276)
T ss_pred EEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-c
Confidence 999999998776431 111112 3688999999874 777777777877764 7
Q ss_pred CCeEEEEECCCcc
Q 003305 151 IRPVLTVNKMDRC 163 (832)
Q Consensus 151 ~p~ilviNKiD~~ 163 (832)
+|+++|+||+|+.
T Consensus 144 v~vi~VinK~D~l 156 (276)
T cd01850 144 VNIIPVIAKADTL 156 (276)
T ss_pred CCEEEEEECCCcC
Confidence 9999999999986
No 256
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.09 E-value=4.6e-10 Score=112.01 Aligned_cols=112 Identities=16% Similarity=0.142 Sum_probs=75.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.+|+++|..|+|||||+.+++... ... .+. .|+... ...+.. +++..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f~~---------~~~-------~t~~~~~~~~~~~--------------~~~~~ 49 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--FPG---------EYI-------PTVFDNYSANVMV--------------DGKPV 49 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC---------cCC-------CcceeeeEEEEEE--------------CCEEE
Confidence 378999999999999999995421 111 000 011100 011111 22357
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHH-HH--cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-AL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~-~~--~~~~p~ilviNKiD~~ 163 (832)
.++||||||..+|.......++.+|++|+|+|.++.-+.+.. ..|.. +. ..+.|+++|.||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 50 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred EEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 899999999999988778889999999999999986555443 23322 22 2357999999999986
No 257
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.09 E-value=3.6e-10 Score=106.80 Aligned_cols=98 Identities=22% Similarity=0.219 Sum_probs=70.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+++|.++|++++|||||+.+|........ -|. .+.|
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~~~~~--------------------KTq-----~i~~------------------- 36 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEEIRYK--------------------KTQ-----AIEY------------------- 36 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCCCCcC--------------------ccc-----eeEe-------------------
Confidence 46899999999999999999933221111 111 1222
Q ss_pred EEEEEeCCC----CCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPG----h~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.=++||||| +..|..........||.+++|.||++..+.-.- ..+...+.|+|-||||+|+.
T Consensus 37 ~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 37 YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred cccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCc
Confidence 224699999 456888888888999999999999986443322 23445678999999999987
No 258
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.09 E-value=4.6e-10 Score=116.03 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=77.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.+|+++|..++|||||+.+|....- . .++.| |+.... ..+.+ +++..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~---------~~y~p-------Ti~~~~~~~~~~--------------~~~~v 49 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--P---------GSYVP-------TVFENYTASFEI--------------DKRRI 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--C---------CccCC-------ccccceEEEEEE--------------CCEEE
Confidence 4799999999999999999954211 0 01111 111111 11222 23467
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHH-HH--cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-AL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~-~~--~~~~p~ilviNKiD~~ 163 (832)
.++||||+|...|.......++.+|++|+|+|.++.-+.+.. ..|.. .. ..+.|++||.||+|+.
T Consensus 50 ~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 50 ELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 899999999999988888889999999999999986544443 33432 11 2467999999999986
No 259
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.09 E-value=8.8e-10 Score=112.32 Aligned_cols=116 Identities=18% Similarity=0.225 Sum_probs=78.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee--eEEEEeeccchhhccccCcCCCCce
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST--GISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+|+++|..++|||||+.+++...- .. +. ..|+... ...+.+.. ...+++.+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f--~~--------------~~--~~Tig~~~~~k~~~~~~---------~~~~~~~~ 54 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQV--LG--------------RP--SWTVGCSVDVKHHTYKE---------GTPEEKTF 54 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CC--------------CC--CcceeeeEEEEEEEEcC---------CCCCCcEE
Confidence 689999999999999999954311 00 00 1122211 11122210 01123467
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHHc----------------------CCCCeEE
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----------------------ERIRPVL 155 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~~----------------------~~~p~il 155 (832)
.++||||+|+.+|.......++.+|++|+|+|.++.-+.+...-|. .+.. .++|++|
T Consensus 55 ~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~Piil 134 (202)
T cd04102 55 FVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLV 134 (202)
T ss_pred EEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEE
Confidence 8999999999999888888999999999999999876655544442 2211 3579999
Q ss_pred EEECCCcc
Q 003305 156 TVNKMDRC 163 (832)
Q Consensus 156 viNKiD~~ 163 (832)
|.||+|+.
T Consensus 135 VGnK~Dl~ 142 (202)
T cd04102 135 IGTKLDQI 142 (202)
T ss_pred EEECccch
Confidence 99999975
No 260
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.09 E-value=3.7e-10 Score=116.39 Aligned_cols=116 Identities=23% Similarity=0.227 Sum_probs=79.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|.+|+|||||+|.|++..-....+..- .|.......+.- +
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~---------------TTr~~ilgi~ts----------------~ 118 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH---------------TTRHRILGIITS----------------G 118 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccccccccc---------------ceeeeeeEEEec----------------C
Confidence 457899999999999999999997654333221111 111111111111 3
Q ss_pred ceEEEEEeCCCCC------------CcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc-CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHV------------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~------------df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~-~~~p~ilviNKiD~~ 163 (832)
..++.|.||||.. .+......|+..||++++|+|+.+--..-.-.+++...+ .++|-|+|+||+|.+
T Consensus 119 eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 119 ETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKL 198 (379)
T ss_pred ceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcc
Confidence 7899999999954 245567889999999999999997323333345555443 468999999999987
No 261
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.09 E-value=6.3e-10 Score=112.81 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=77.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|..++|||||+.++++.. ... .+. -|+.... ...+. .+++...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~~---------~~~-------~t~~~~~-~~~~~------------~~~~~~~ 52 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FPK---------EYI-------PTVFDNY-SAQTA------------VDGRTVS 52 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCc---------CCC-------CceEeee-EEEEE------------ECCEEEE
Confidence 589999999999999999996431 110 000 1222111 11111 1234678
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHH-HH--cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-AL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~-~~--~~~~p~ilviNKiD~~ 163 (832)
++||||||+..|.......++.+|++|+|+|.++..+.+... .|.. +. ..++|++||.||.|+.
T Consensus 53 l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 120 (191)
T cd01875 53 LNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred EEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence 999999999999988888899999999999998866555442 3432 22 2468999999999986
No 262
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.08 E-value=1.4e-09 Score=113.06 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=77.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|..++|||+|+.+++... ... ++.+ |+.... ..... .+++..
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~--F~~---------~y~p-------Ti~~~~-~~~i~------------~~~~~v 61 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC--YPE---------TYVP-------TVFENY-TAGLE------------TEEQRV 61 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC--CCC---------CcCC-------ceeeee-EEEEE------------ECCEEE
Confidence 3479999999999999999995431 110 0000 211111 00111 123467
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHH-HHH--cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLR-QAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~-~~~--~~~~p~ilviNKiD~~ 163 (832)
.++||||+|..+|.......++.+|++|||+|.++..+.+. ...|. .+. ..+.|++||.||+|+.
T Consensus 62 ~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 62 ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred EEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 89999999999998888888999999999999998666554 23342 222 2367889999999975
No 263
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=1.4e-09 Score=123.71 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=75.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
-+..|+++|.+|+|||||+++|....-.+ .++ .+.|+......+.+. +
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkI----------ady------pfTTl~P~lGvv~~~----------------~ 205 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKI----------ADY------PFTTLVPNLGVVQAG----------------D 205 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccc----------ccc------CcccccceEEEEEEC----------------C
Confidence 46789999999999999999996532221 111 124554444444454 6
Q ss_pred eEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCc---cch--hHH----HHHHHH----------HcCCC
Q 003305 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCV--QTE----TVLRQA----------LGERI 151 (832)
Q Consensus 98 ~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g---~~~--qt~----~~~~~~----------~~~~~ 151 (832)
..+.|+||||..+ +..+..+.+..||++|+|||++.- ..+ +.. ++..+. ...+.
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 7899999999753 223456677889999999999741 111 111 121221 12468
Q ss_pred CeEEEEECCCcc
Q 003305 152 RPVLTVNKMDRC 163 (832)
Q Consensus 152 p~ilviNKiD~~ 163 (832)
|.|||+||+|++
T Consensus 286 P~IVVlNKiDL~ 297 (500)
T PRK12296 286 PRLVVLNKIDVP 297 (500)
T ss_pred CEEEEEECccch
Confidence 999999999986
No 264
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.07 E-value=4.8e-10 Score=111.60 Aligned_cols=112 Identities=14% Similarity=0.101 Sum_probs=72.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
++|+++|+.|+|||||+.+|+...-. . .+.+ |+... ...+.+. ++..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~---------~~~~-------t~~~~~~~~~~~~--------------~~~~ 49 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--E---------VYVP-------TVFENYVADIEVD--------------GKQV 49 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--C---------CCCC-------ccccceEEEEEEC--------------CEEE
Confidence 58999999999999999999653210 0 0000 11110 0112221 2356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHH-HHHHc--CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.+|.......++.+|++++|+|..+....... ..| ..... .++|+++++||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 50 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred EEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcc
Confidence 789999999998877666788999999999998864332221 222 22222 478999999999976
No 265
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.04 E-value=6.9e-10 Score=110.45 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=74.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+++++|..|+|||||+.+++... ... .+.+ .....-...+.. ++....+
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~~---------~~~~------t~~~~~~~~~~~--------------~~~~~~~ 50 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YPT---------EYVP------TAFDNFSVVVLV--------------DGKPVRL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC---------CCCC------ceeeeeeEEEEE--------------CCEEEEE
Confidence 68999999999999999985531 110 0110 011110111112 1235688
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH--HHHHHHHc--CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~--~~~~~~~~--~~~p~ilviNKiD~~ 163 (832)
.+|||||+.+|......+++.+|++|+|+|.++..+.+.. ..+..... .+.|+++++||+|+.
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 9999999999887777788999999999999986554432 22333332 368999999999976
No 266
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.04 E-value=1.6e-09 Score=106.61 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=74.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+.+++... ... +....+........+... +....+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~--------------~~~~~l 51 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE--FHS--------------SHISTIGVDFKMKTIEVD--------------GIKVRI 51 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCC--------------CCCCceeeEEEEEEEEEC--------------CEEEEE
Confidence 68999999999999999995321 111 000011111111122221 225688
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
.+|||||..+|.......++.+|++++|+|.++.-+.+...-| ..+. ..+.|++++.||+|+.
T Consensus 52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 52 QIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9999999999988888899999999999999875443333222 2111 2357889999999975
No 267
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.04 E-value=2.5e-09 Score=120.09 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=74.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+..|+++|.+|+|||||+++|......+.. .+ +.|.......+.+. .+.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~-yp---------------fTTl~PnlG~v~~~---------------~~~ 206 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIAN-YH---------------FTTLVPNLGVVETD---------------DGR 206 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCcccc-CC---------------cceeceEEEEEEEe---------------CCc
Confidence 458999999999999999999654322211 01 22444333333332 146
Q ss_pred EEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCc--cch-hH-HHHHHHHHc-----CCCCeEEEEECCCc
Q 003305 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG--VCV-QT-ETVLRQALG-----ERIRPVLTVNKMDR 162 (832)
Q Consensus 99 ~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g--~~~-qt-~~~~~~~~~-----~~~p~ilviNKiD~ 162 (832)
.++|+||||..+ +.....+.+..+|++|+|||++.. ..+ +. ..+...+.. .++|.+||+||+|+
T Consensus 207 ~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 207 SFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred eEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 899999999753 334556677789999999999753 122 12 222233332 36799999999997
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 287 ~ 287 (424)
T PRK12297 287 P 287 (424)
T ss_pred c
Confidence 5
No 268
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.02 E-value=4.7e-09 Score=102.92 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=72.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEE
Q 003305 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (832)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (832)
|+++|+.|+|||||++.|........ .+...+.|.... .+.+ +..+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~--------------~~~~~~~t~~~~--~~~~-----------------~~~~~ 48 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR--------------TSKTPGKTQLIN--FFNV-----------------NDKFR 48 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee--------------ecCCCCcceeEE--EEEc-----------------cCeEE
Confidence 79999999999999999953211100 011112232221 1122 23889
Q ss_pred EEeCCCCCCc----------HHHHHHHh---hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 102 LIDSPGHVDF----------SSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 102 liDTPGh~df----------~~~~~~~l---~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++||||+.+. ...+...+ ..++++++|+|...........+++.+...+.|+++++||+|+.
T Consensus 49 ~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 49 LVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred EecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 9999998653 22222233 34678999999988777777777777777889999999999975
No 269
>PLN00023 GTP-binding protein; Provisional
Probab=99.01 E-value=2.1e-09 Score=115.01 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=79.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|..++|||||+.+|+...- .. .+ ...-|.+.... .+.+.........+. ..+++
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F--~~---------~~---~pTIG~d~~ik--~I~~~~~~~~~~~ik-~d~~k 81 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSS--IA---------RP---PQTIGCTVGVK--HITYGSPGSSSNSIK-GDSER 81 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCc--cc---------cc---CCceeeeEEEE--EEEECCccccccccc-ccCCc
Confidence 3456899999999999999999954210 00 00 00011122111 122220000000000 00124
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---------------CCCCeEEEEECC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---------------ERIRPVLTVNKM 160 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---------------~~~p~ilviNKi 160 (832)
.+.++||||+|+..|.......++.+|++|+|+|.++--......-| ..+.. .++|++||.||+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 57899999999999998888899999999999999885444333333 22222 147899999999
Q ss_pred Ccc
Q 003305 161 DRC 163 (832)
Q Consensus 161 D~~ 163 (832)
|+.
T Consensus 162 DL~ 164 (334)
T PLN00023 162 DIA 164 (334)
T ss_pred ccc
Confidence 986
No 270
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.01 E-value=2.3e-09 Score=110.82 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=78.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++++... .... + ..|+........+. .+.+..
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~--~~~~------~----------~~t~~~~~~~~~~~------------~~~~~i 58 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGE--FEKK------Y----------IPTLGVEVHPLKFY------------TNCGPI 58 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCC--CCCC------C----------CCccceEEEEEEEE------------ECCeEE
Confidence 3589999999999999998775421 1110 0 01222222222221 123468
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHH-H--HcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A--LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~-~--~~~~~p~ilviNKiD~~ 163 (832)
.++++||||+.+|.......++.+|++++|+|.++..+.+....|.. . ...++|++++.||+|+.
T Consensus 59 ~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 59 CFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred EEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 99999999999998777778889999999999998776665444421 1 12467888999999975
No 271
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.00 E-value=7.2e-10 Score=103.35 Aligned_cols=115 Identities=19% Similarity=0.216 Sum_probs=82.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|.+||..|+|||+|+-++.... ...+..--|.++.....+.. +++..
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~----------------fd~~~~~tIGvDFkvk~m~v--------------dg~~~ 60 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT----------------FDDLHPTTIGVDFKVKVMQV--------------DGKRL 60 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc----------------cCccCCceeeeeEEEEEEEE--------------cCceE
Confidence 4689999999999999998884321 12222222233333323322 45688
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHH-----cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~-----~~~~p~ilviNKiD~~ 163 (832)
++.||||.|++.|...+.+..|.|-|+|+|.|.+..-+.....+|..-. ..++-.++|.||+|+.
T Consensus 61 KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 61 KLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred EEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 9999999999999999999999999999999999766655556664322 2234456799999976
No 272
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.99 E-value=1.5e-09 Score=127.85 Aligned_cols=104 Identities=24% Similarity=0.236 Sum_probs=73.8
Q ss_pred eCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEEEEeC
Q 003305 26 AHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDS 105 (832)
Q Consensus 26 G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDT 105 (832)
|.+|+|||||+|+|....- .+ ....|+|++.....+.++ ++.++++||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~----------~v------~n~pG~Tv~~~~~~i~~~----------------~~~i~lvDt 48 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ----------TV------GNWPGVTVEKKEGKLGFQ----------------GEDIEIVDL 48 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC----------ee------cCCCCeEEEEEEEEEEEC----------------CeEEEEEEC
Confidence 7899999999999943211 01 113467887766666664 678999999
Q ss_pred CCCCCcHHH-----HHH-H--hhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 106 PGHVDFSSE-----VTA-A--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 106 PGh~df~~~-----~~~-~--l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
||+.+|... +.+ . ...+|++++|+|+++. . .......++.+.++|+++++||+|+.
T Consensus 49 PG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l-e-r~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 49 PGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL-E-RNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred CCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc-h-hhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 999887542 222 2 2468999999999873 2 22334455667889999999999975
No 273
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.99 E-value=2.7e-09 Score=110.73 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=69.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+++|+... ... ..+.+ ..+.... ..++.+. +....+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~--~~~--------~~~~~---t~~~~~~--~~~i~~~--------------~~~~~l 52 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGE--YDD--------HAYDA---SGDDDTY--ERTVSVD--------------GEESTL 52 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--cCc--------cCcCC---Cccccce--EEEEEEC--------------CEEEEE
Confidence 68999999999999999995321 110 00000 0000011 1112221 236789
Q ss_pred EEEeCCCCCCcHHHHHHHhh-ccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALR-ITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~-~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
++|||||+.++.. ...++ .+|++++|+|+++....... ..+..+.. .++|+|+|.||+|+.
T Consensus 53 ~i~Dt~G~~~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 53 VVIDHWEQEMWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred EEEeCCCcchHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 9999999984432 23556 89999999999986544332 22232322 468999999999986
No 274
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.98 E-value=3.1e-09 Score=108.27 Aligned_cols=114 Identities=18% Similarity=0.129 Sum_probs=69.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|..|+|||||+++|+...... .|.. ..+. ...|.... .+. ......
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~----~~~~-~~~~------~~~t~~~~----~~~-------------~~~~~~ 53 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE----EGAA-PTGV------VETTMKRT----PYP-------------HPKFPN 53 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC----CCcc-ccCc------cccccCce----eee-------------cCCCCC
Confidence 379999999999999999996532110 1110 0000 00111110 111 001346
Q ss_pred EEEEeCCCCCCcHHHHHH-----HhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTA-----ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~-----~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+.+|||||..+....... .+..+|.+++|.| +.........++.+...+.|+++|+||+|+.
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 899999998654222212 2456788777754 3456666666777777889999999999985
No 275
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.8e-09 Score=103.24 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=86.8
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
+-+.-+|+++|..++|||||+.+++|..--- .+ +-||.....+..+. .++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~-----------~Y-------qATIGiDFlskt~~------------l~d 68 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDN-----------TY-------QATIGIDFLSKTMY------------LED 68 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcc-----------cc-------cceeeeEEEEEEEE------------EcC
Confidence 3445789999999999999999998864211 11 12555555555443 234
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHHHcCC----CCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGER----IRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~~~~~----~p~ilviNKiD~~ 163 (832)
..+.+.||||.|++.|...+.+++|.+.+||+|.|.++--+.+. ..-++-+..++ +-+++|.||.|+.
T Consensus 69 ~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred cEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 57899999999999999999999999999999999998655544 33334444433 3345699999987
No 276
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3.1e-09 Score=102.09 Aligned_cols=114 Identities=23% Similarity=0.175 Sum_probs=78.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.++.++|..|+|||.|+-++..+. ...+.. .|+......-.+. .+++..+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~kr-----------F~~~hd-------~TiGvefg~r~~~------------id~k~IK 56 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKR-----------FQPVHD-------LTIGVEFGARMVT------------IDGKQIK 56 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccC-----------cccccc-------ceeeeeeceeEEE------------EcCceEE
Confidence 478899999999999998883321 111111 1222111111111 2445789
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH----HHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~----~~~~~~~~p~ilviNKiD~~ 163 (832)
+++|||.||+.|..-+.+..+.+-||+||.|.+.--+......| ++....+..++|+.||+|+.
T Consensus 57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 99999999999999999999999999999999876555444444 22223456677899999987
No 277
>PRK09866 hypothetical protein; Provisional
Probab=98.94 E-value=2.1e-08 Score=114.40 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=56.7
Q ss_pred ceEEEEEeCCCCCC-----cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCC--CCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVD-----FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER--IRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~d-----f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~--~p~ilviNKiD~~ 163 (832)
..++.|+||||... +...+..++..+|.+++|+|+..+.....+.+++.+.+.+ .|+++++||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 45889999999754 3445778999999999999999988888888888877777 4999999999975
No 278
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.3e-08 Score=93.60 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=82.3
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+-..+|+++|+.|+|||.|+.++ ..|.... | .|-||.........+ .++.
T Consensus 5 kflfkivlvgnagvgktclvrrf--tqglfpp---g-------------qgatigvdfmiktve------------v~ge 54 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRF--TQGLFPP---G-------------QGATIGVDFMIKTVE------------VNGE 54 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhh--hccCCCC---C-------------CCceeeeeEEEEEEE------------ECCe
Confidence 34568999999999999999998 4444432 2 133444433332222 2345
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-H---HHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-R---QALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~---~~~~~~~p~ilviNKiD~~ 163 (832)
..++.||||.|++.|..-+.+..|.+.+.|||.|.+.-.+..-..-| + +-...++--|+|.||+|+.
T Consensus 55 kiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 55 KIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 77899999999999999999999999999999999865544332222 2 2223445567899999976
No 279
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.7e-09 Score=103.45 Aligned_cols=115 Identities=20% Similarity=0.194 Sum_probs=83.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.-+|+++|..++|||||+-++.... ..+-++ -||..+..+..+.. .....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~----------------F~e~~e--~TIGaaF~tktv~~------------~~~~i 54 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQ----------------FHENIE--PTIGAAFLTKTVTV------------DDNTI 54 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCc----------------cccccc--cccccEEEEEEEEe------------CCcEE
Confidence 3589999999999999998884321 111011 25666665555542 22367
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCC-C-eE--EEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-R-PV--LTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~-p-~i--lviNKiD~~ 163 (832)
++-||||.|.+.|.+-..-++|.|++||+|+|.++--+.+...-|-.-..... | ++ |+.||+|+.
T Consensus 55 kfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 55 KFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred EEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 88999999999999999999999999999999999777777666643333333 2 33 589999987
No 280
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.91 E-value=1.6e-08 Score=99.15 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=76.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..++|||||+++|.... ... ++.+ ..| .......+.. ++....+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~~~---------~~~~---t~~--~~~~~~~~~~--------------~~~~~~l 50 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--FPE---------NYIP---TIG--IDSYSKEVSI--------------DGKPVNL 50 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--TTS---------SSET---TSS--EEEEEEEEEE--------------TTEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--ccc---------cccc---ccc--cccccccccc--------------ccccccc
Confidence 58999999999999999996532 111 0000 001 1111222222 2347789
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHH---cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~---~~~~p~ilviNKiD~~ 163 (832)
.||||+|+.+|.......++.+|++|+|.|.++.-+.....-|. .+. ....|++|+.||.|+.
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 51 EIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp EEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 99999999999887788899999999999998865554444442 222 2246888899999987
No 281
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.91 E-value=1.4e-08 Score=95.71 Aligned_cols=115 Identities=22% Similarity=0.244 Sum_probs=83.6
Q ss_pred cccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
+..++-.+|-|+|..||||||++.+|+.... ..... |.....-++.++
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~---------------~~i~p----t~gf~Iktl~~~------------- 58 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGEDT---------------DTISP----TLGFQIKTLEYK------------- 58 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCCc---------------cccCC----ccceeeEEEEec-------------
Confidence 3334456889999999999999999954321 11111 222333344554
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchh-HHHHHHHHH----cCCCCeEEEEECCCcc
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~q-t~~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
++.++++|.-|...+..-+.++...+||.|.|+|+++....| +...+..+. ..+.|++++.||.|..
T Consensus 59 ---~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 59 ---GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred ---ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 899999999999999999999999999999999998754333 233333322 3467999999999988
No 282
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=5.9e-09 Score=114.27 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=89.6
Q ss_pred hhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccC
Q 003305 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (832)
Q Consensus 12 ~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (832)
.++..+.-.+|+|+|++|+|||||+|+|......|....+| .|-++-.+.+..+
T Consensus 261 ~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~G---------------TTRDaiea~v~~~----------- 314 (531)
T KOG1191|consen 261 EIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPG---------------TTRDAIEAQVTVN----------- 314 (531)
T ss_pred hHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCC---------------cchhhheeEeecC-----------
Confidence 34444556799999999999999999998888877776666 3444444555554
Q ss_pred cCCCCceEEEEEeCCCCCC---------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCC------------
Q 003305 92 ERNGNEYLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER------------ 150 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~d---------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~------------ 150 (832)
++.+.|+||.|..+ =+.....++..+|.+++|+|+.++...+...+.+.+...+
T Consensus 315 -----G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~ 389 (531)
T KOG1191|consen 315 -----GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEK 389 (531)
T ss_pred -----CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccc
Confidence 89999999999866 1223567888999999999998877776666555554433
Q ss_pred CCeEEEEECCCcc
Q 003305 151 IRPVLTVNKMDRC 163 (832)
Q Consensus 151 ~p~ilviNKiD~~ 163 (832)
.|.+++.||.|..
T Consensus 390 ~~~i~~~nk~D~~ 402 (531)
T KOG1191|consen 390 QRIILVANKSDLV 402 (531)
T ss_pred cceEEEechhhcc
Confidence 3566677777764
No 283
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.4e-08 Score=100.45 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=83.8
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
......|.++|.+++|||.++.++...+-...- .. -|-|+....++.. ++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~-----------~s-----TiGIDFk~kti~l--------------~g 58 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF-----------IS-----TIGIDFKIKTIEL--------------DG 58 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCc-----------cc-----eEEEEEEEEEEEe--------------CC
Confidence 355779999999999999999998443211110 00 0112222222222 23
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH----HHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~----~~~~~~~p~ilviNKiD~~ 163 (832)
+...+.+|||.|.+.|..-+-.+++.|+|++||+|.+...+.....-|. .....++|.+||.||+|+.
T Consensus 59 ~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 59 KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 5778999999999999999999999999999999999876665544453 2223478999999999987
No 284
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.88 E-value=4.7e-09 Score=100.65 Aligned_cols=117 Identities=20% Similarity=0.179 Sum_probs=85.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|.|+|.+|+|||+|.+++.+..= .++...||.....+-.+. .+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF------------------~~qykaTIgadFltKev~------------Vd~~ 56 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF------------------SQQYKATIGADFLTKEVQ------------VDDR 56 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHH------------------HHHhccccchhheeeEEE------------EcCe
Confidence 4467999999999999999999966421 011123444444433333 2345
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-----HHHc---CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-----QALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-----~~~~---~~~p~ilviNKiD~~ 163 (832)
...+.||||.|.++|.+.-..-.|.+|+++||.|....-+.....-|+ ++.. ..-|.||+.||+|..
T Consensus 57 ~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 57 SVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred EEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 678899999999999988888889999999999998766666655554 3331 235899999999986
No 285
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=7.8e-09 Score=101.77 Aligned_cols=129 Identities=18% Similarity=0.273 Sum_probs=84.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
..+.|-++|..|||||+|.-.|++... .+ ++ .+|......+.+. +
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~------~~--Tv-----------tSiepn~a~~r~g----------------s 81 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSH------RG--TV-----------TSIEPNEATYRLG----------------S 81 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCc------cC--ee-----------eeeccceeeEeec----------------C
Confidence 347899999999999999999965421 12 11 2444445555554 4
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhh---ccCcEEEEEcCCCcc---chhHHH---HHHHH--HcCCCCeEEEEECCCccccc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALR---ITDGALVVVDCIEGV---CVQTET---VLRQA--LGERIRPVLTVNKMDRCFLE 166 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~---~~D~ailVvda~~g~---~~qt~~---~~~~~--~~~~~p~ilviNKiD~~~~~ 166 (832)
...+|||-|||..........+. .+-++|+|||+..-. ..-.+. ++..+ ...+.|+++++||.|+.
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~--- 158 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF--- 158 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh---
Confidence 55899999999999888887776 799999999998622 111122 22222 24456777899999998
Q ss_pred ccCC-HHHHHHHHHHHHHHh
Q 003305 167 LQVD-GEEAYQTFSRVVENA 185 (832)
Q Consensus 167 ~~~~-~~~~~~~~~~~~~~~ 185 (832)
-+- .+-+.+.++.-+..+
T Consensus 159 -tAkt~~~Ir~~LEkEi~~l 177 (238)
T KOG0090|consen 159 -TAKTAEKIRQQLEKEIHKL 177 (238)
T ss_pred -hcCcHHHHHHHHHHHHHHH
Confidence 554 334444444444333
No 286
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.87 E-value=7.2e-08 Score=101.35 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=71.5
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
......+|+++|.+|+|||||+|+|+........ +.. +.|.........+.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~---------~~~------~~T~~~~~~~~~~~-------------- 77 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATS---------AFQ------SETLRVREVSGTVD-------------- 77 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC---------CCC------CceEEEEEEEEEEC--------------
Confidence 3455679999999999999999999765432211 111 12333333333343
Q ss_pred CCceEEEEEeCCCCCCcHH------H----HHHHhh--ccCcEEEEEcCCC-ccchhHHHHHHHHHc-CC----CCeEEE
Q 003305 95 GNEYLINLIDSPGHVDFSS------E----VTAALR--ITDGALVVVDCIE-GVCVQTETVLRQALG-ER----IRPVLT 156 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~------~----~~~~l~--~~D~ailVvda~~-g~~~qt~~~~~~~~~-~~----~p~ilv 156 (832)
+..+++|||||..+... . +.+.+. ..|++++|..... ........+++.+.. .+ .++++|
T Consensus 78 --g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV 155 (249)
T cd01853 78 --GFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVV 155 (249)
T ss_pred --CeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEE
Confidence 67899999999987731 1 222232 4577777754432 233444445544332 22 368899
Q ss_pred EECCCcc
Q 003305 157 VNKMDRC 163 (832)
Q Consensus 157 iNKiD~~ 163 (832)
+||+|..
T Consensus 156 ~T~~d~~ 162 (249)
T cd01853 156 LTHAASS 162 (249)
T ss_pred EeCCccC
Confidence 9999986
No 287
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.85 E-value=2.9e-08 Score=101.95 Aligned_cols=166 Identities=17% Similarity=0.145 Sum_probs=104.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
...-||-++|..|+|||||+|+|.......... .| ....+.- ..| ....
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~-vg----~~t~~~~-------------~~~-------------~~~~ 85 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSK-VG----VGTDITT-------------RLR-------------LSYD 85 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeee-cc----cCCCchh-------------hHH-------------hhcc
Confidence 456799999999999999999997543322111 11 0000000 001 0112
Q ss_pred ceEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcC--CCCeEEEEECCCccccc-
Q 003305 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRCFLE- 166 (832)
Q Consensus 97 ~~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~~p~ilviNKiD~~~~~- 166 (832)
.+.++||||||..| +.......+...|.+++++|+.+.--...+..|+..... +.++++++|-.|+..--
T Consensus 86 ~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred ccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence 57899999999987 666688888999999999999986655566666665543 46889999999986321
Q ss_pred -----ccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHh
Q 003305 167 -----LQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 229 (832)
Q Consensus 167 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 229 (832)
-+.......+.+++..+.+..++. | ..+|.++++..+|++ +.++.-+
T Consensus 166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q-------------~-V~pV~~~~~r~~wgl--~~l~~al 217 (296)
T COG3596 166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQ-------------E-VKPVVAVSGRLPWGL--KELVRAL 217 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHh-------------h-cCCeEEeccccCccH--HHHHHHH
Confidence 011222334445555554444443 2 126778888889975 4444444
No 288
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.81 E-value=2.1e-08 Score=115.09 Aligned_cols=110 Identities=24% Similarity=0.322 Sum_probs=80.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
..||++|++|+|||||.|+|.+.+ ...-+.+ |.|++.+...+.+. ++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-----------q~VgNwp-----GvTVEkkeg~~~~~----------------~~~ 51 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-----------QKVGNWP-----GVTVEKKEGKLKYK----------------GHE 51 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-----------ceecCCC-----CeeEEEEEEEEEec----------------Cce
Confidence 459999999999999999993322 2222233 78999988888886 788
Q ss_pred EEEEeCCCCCCcHH----H--HHHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSS----E--VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~----~--~~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+.++|.||.-++.. | +.+.+ ...|++|-|+||+. -.....+--|..+.++|+++++|++|..
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 99999999765432 1 22333 35699999999985 1222223346678999999999999965
No 289
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.81 E-value=2.4e-08 Score=103.34 Aligned_cols=114 Identities=20% Similarity=0.152 Sum_probs=77.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|..|+|||||+++|....-.. +. ..|+.......... ...+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~----------------~~--~~t~~~~~~~~~~~------------~~~~~~~ 55 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE----------------GY--PPTIGNLDPAKTIE------------PYRRNIK 55 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc----------------cC--CCceeeeeEEEEEE------------eCCCEEE
Confidence 799999999999999999995432110 00 01222222222211 0111467
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-cchhHHHHHH-HHHc---CCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-~~~qt~~~~~-~~~~---~~~p~ilviNKiD~~ 163 (832)
+.+|||+|+.+|..-+....+.++++++++|.... ........|. .+.. .+.|++++.||+|+.
T Consensus 56 ~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 56 LQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred EEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 89999999999999999999999999999999862 2223333333 3333 258999999999987
No 290
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.80 E-value=2.7e-08 Score=97.58 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=69.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|..|+|||||+.+++... ... ...+.. +. . ...+.++ ++...+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~--f~~---------~~~~~~---~~-~---~~~i~~~--------------~~~~~l 49 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS--YVQ---------LESPEG---GR-F---KKEVLVD--------------GQSHLL 49 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCC---------CCCCCc---cc-e---EEEEEEC--------------CEEEEE
Confidence 79999999999999999985421 100 001100 00 0 0112222 235679
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
.++||+|..+. ...+.+|++++|+|.++--+.+.. ..+..+.. .++|++++.||+|+.
T Consensus 50 ~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 50 LIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 99999999762 356789999999999987766663 33333332 357899999999974
No 291
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.80 E-value=2.2e-08 Score=101.13 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=70.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.+|+++|..|+|||||+++|.... ... +.. .|+.... ..+.+. +...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~--~~~--------------~~~--~t~~~~~~~~~~~~--------------~~~~ 49 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE--FPE--------------EYH--PTVFENYVTDCRVD--------------GKPV 49 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCc--------------ccC--CcccceEEEEEEEC--------------CEEE
Confidence 479999999999999999995321 111 000 0111110 011111 2246
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHH--cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
.++++||||+.+|.......++.+|++++|+|.+..-..+... .| ..+. ...+|++++.||+|+.
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 7899999999887654445678999999999987654433321 23 2222 2358999999999975
No 292
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2.3e-08 Score=98.42 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=82.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
-..+|+++|.+++|||-|+.++....-.+ +. . -||..-..+.... .+++.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~-----------~S-----k--sTIGvef~t~t~~------------vd~k~ 62 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSL-----------ES-----K--STIGVEFATRTVN------------VDGKT 62 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCc-----------cc-----c--cceeEEEEeecee------------ecCcE
Confidence 35679999999999999999993322111 11 1 1332222222221 24567
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~~p~ilviNKiD~~ 163 (832)
.+..||||.|++.|..-+....|.|-||+||.|.+...+.+...-| ++++. .+++++++.||+|+.
T Consensus 63 vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 63 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred EEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 8999999999999999999999999999999999987766654444 33332 467888999999986
No 293
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.77 E-value=1.1e-07 Score=98.99 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=52.7
Q ss_pred eEEEEEeCCCCCCc-------------HHHHHHHhh-ccCcEEEEEcCCCccchhH-HHHHHHHHcCCCCeEEEEECCCc
Q 003305 98 YLINLIDSPGHVDF-------------SSEVTAALR-ITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDR 162 (832)
Q Consensus 98 ~~i~liDTPGh~df-------------~~~~~~~l~-~~D~ailVvda~~g~~~qt-~~~~~~~~~~~~p~ilviNKiD~ 162 (832)
..++||||||.... ...+..+++ ..+.+++|+||..++..+. ..+.+.+...+.+.++|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 57999999998632 123556777 4568999999999988877 57777888889999999999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 205 ~ 205 (240)
T smart00053 205 M 205 (240)
T ss_pred C
Confidence 7
No 294
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.4e-08 Score=96.76 Aligned_cols=112 Identities=20% Similarity=0.165 Sum_probs=83.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
..-.+|.++|--+|||||++.+| +.+.+.. + .| |+....-.+.|.
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykL--k~~E~vt--------t--vP-------TiGfnVE~v~yk---------------- 59 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKL--KLGEIVT--------T--VP-------TIGFNVETVEYK---------------- 59 (181)
T ss_pred cceEEEEEEeccCCCceeeeEee--ccCCccc--------C--CC-------ccccceeEEEEc----------------
Confidence 34578999999999999999888 2222111 1 22 666666666665
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccc--hhHHHHHHHHHc---CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--VQTETVLRQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~--~qt~~~~~~~~~---~~~p~ilviNKiD~~ 163 (832)
+..+++||.-|+..+..-...+.+..+++|+|||+++-.. ..-.++.+.... .+.|++++.||.|.+
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 8899999999999999999999999999999999998432 222233333332 367888999999998
No 295
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=3.8e-08 Score=91.09 Aligned_cols=115 Identities=23% Similarity=0.171 Sum_probs=80.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..++.++|+.|+|||.|+.+++...-.-+. .+||.....+-... ..++..
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDds------------------sHTiGveFgSrIin------------VGgK~v 58 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDS------------------SHTIGVEFGSRIVN------------VGGKTV 58 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccc------------------cceeeeeecceeee------------ecCcEE
Confidence 457899999999999999999764321110 02222222111111 234578
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH----HHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~----~~~~~~~~p~ilviNKiD~~ 163 (832)
++.||||.|++.|..-+.+..|.+-||+||.|++..-......-| +.....++-++++.||-|+.
T Consensus 59 KLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 59 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 999999999999999999999999999999999976555544444 22223345566789999986
No 296
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.75 E-value=4e-08 Score=99.85 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=49.0
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHHc--CCCCeEEEEECCCcc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
++.+.++||||+|..+.. ....++.+|++|+|+|.++..+.+... .| ..+.. .+.|+++|.||+|+.
T Consensus 63 ~~~v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 63 GVSVSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred CEEEEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 457899999999987632 334678999999999998865554432 34 22222 367899999999986
No 297
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.75 E-value=2e-08 Score=92.58 Aligned_cols=110 Identities=22% Similarity=0.222 Sum_probs=75.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
..+.++|-.++||||+++.. ..|...+ |- -+.+|.-+ ..+. ..+..
T Consensus 21 mel~lvGLq~sGKtt~Vn~i--a~g~~~e---------dm---iptvGfnm----rk~t----------------kgnvt 66 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVI--ARGQYLE---------DM---IPTVGFNM----RKVT----------------KGNVT 66 (186)
T ss_pred eeEEEEeeccCCcceEEEEE--eeccchh---------hh---ccccccee----EEec----------------cCceE
Confidence 46889999999999999866 1111111 00 11122222 1111 13678
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-chhHH----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTE----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-~~qt~----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+-++|.||+..|.....+..|.+|+++++|||.+.- -...+ .++....-.++|+++..||+|++
T Consensus 67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCc
Confidence 999999999999999999999999999999999821 11122 22223334578999999999998
No 298
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.73 E-value=1.3e-07 Score=98.78 Aligned_cols=97 Identities=25% Similarity=0.272 Sum_probs=63.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|.+|+|||||+++|...... .+ ++ .+.|.......+.+. +..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-----v~-----~~------~~tT~~~~~g~~~~~----------------~~~i 49 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-----VA-----AY------EFTTLTCVPGVLEYK----------------GAKI 49 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-----cc-----CC------CCccccceEEEEEEC----------------CeEE
Confidence 6899999999999999999543211 11 00 112333333334443 6789
Q ss_pred EEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCC
Q 003305 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER 150 (832)
Q Consensus 101 ~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ 150 (832)
+++||||+.+ +..++...++.+|++++|+|+++.. .+-..+.+.+...+
T Consensus 50 ~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~-~~~~~~~~~l~~~g 105 (233)
T cd01896 50 QLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE-GHREILERELEGVG 105 (233)
T ss_pred EEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch-hHHHHHHHHHHHcC
Confidence 9999999854 3345677899999999999998643 24444555554443
No 299
>COG2262 HflX GTPases [General function prediction only]
Probab=98.73 E-value=5.5e-08 Score=105.37 Aligned_cols=116 Identities=23% Similarity=0.241 Sum_probs=77.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
..+..|+++|-.|+|||||+|+|.......... .. -|.+...-.+.+. +
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~----------LF------ATLdpttR~~~l~---------------~ 238 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQ----------LF------ATLDPTTRRIELG---------------D 238 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccc----------cc------ccccCceeEEEeC---------------C
Confidence 457899999999999999999995322111111 10 1344444444443 2
Q ss_pred ceEEEEEeCCCCCCc--------HHHHHHHhhccCcEEEEEcCCCcc-chhHH---HHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGV-CVQTE---TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df--------~~~~~~~l~~~D~ailVvda~~g~-~~qt~---~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+..+.+.||-|+.+= ...+......+|..+.|||+++.- ..+.. .++..+....+|+|+|.||+|+.
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 678999999998641 223445567899999999999863 22222 33444434567999999999977
No 300
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.72 E-value=2.2e-07 Score=99.13 Aligned_cols=127 Identities=14% Similarity=0.152 Sum_probs=73.8
Q ss_pred HHHHHhhhc----ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeec
Q 003305 6 AEGLRRIMD----FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81 (832)
Q Consensus 6 ~~~~~~~~~----~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 81 (832)
.+.+.+++. ...+..+|+++|..|+||||++|+|+......... +. +.|.........+.
T Consensus 21 q~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~---------f~------s~t~~~~~~~~~~~- 84 (313)
T TIGR00991 21 QTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA---------FQ------SEGLRPMMVSRTRA- 84 (313)
T ss_pred HHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC---------CC------CcceeEEEEEEEEC-
Confidence 344555553 23356799999999999999999997654322111 00 00111111222222
Q ss_pred cchhhccccCcCCCCceEEEEEeCCCCCCcHH---HHHHHhh------ccCcEEEEEcCCC-ccchhHHHHHHHHHc---
Q 003305 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSS---EVTAALR------ITDGALVVVDCIE-GVCVQTETVLRQALG--- 148 (832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~---~~~~~l~------~~D~ailVvda~~-g~~~qt~~~~~~~~~--- 148 (832)
+..+++|||||..+... +....++ ..|++++|..... ........+++.+..
T Consensus 85 ---------------G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG 149 (313)
T TIGR00991 85 ---------------GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFG 149 (313)
T ss_pred ---------------CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhh
Confidence 78999999999887521 2222232 4788999954332 233343444443322
Q ss_pred --CCCCeEEEEECCCcc
Q 003305 149 --ERIRPVLTVNKMDRC 163 (832)
Q Consensus 149 --~~~p~ilviNKiD~~ 163 (832)
.-.+.|+++++.|..
T Consensus 150 ~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 150 KDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhhhccEEEEEECCccC
Confidence 124689999999965
No 301
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.71 E-value=2.7e-07 Score=100.41 Aligned_cols=142 Identities=17% Similarity=0.196 Sum_probs=87.3
Q ss_pred HHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc-cCCceEeecCcccccccC---ceeeeee---EEEEeec
Q 003305 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRADEAERG---ITIKSTG---ISLYYEM 81 (832)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~d~~~~E~~rg---iTi~~~~---~~~~~~~ 81 (832)
.+++..+...-..|+++|++++|||||+++|....-...-. ...+.+..|..+... .| +|..... -.+...
T Consensus 7 ykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~-~GktItTTePkfvP~kAvEI~- 84 (492)
T TIGR02836 7 YKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSA-AGKTIMTTEPKFVPNEAVEIN- 84 (492)
T ss_pred HHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCC-CCCCcccCCCccccCcceEEe-
Confidence 34555555556689999999999999999998762111000 000011222222211 12 2222222 111111
Q ss_pred cchhhccccCcCCCCceEEEEEeCCCCCC-------------------------cHHH----HHHHhh-ccCcEEEEE-c
Q 003305 82 TDDALKSYKGERNGNEYLINLIDSPGHVD-------------------------FSSE----VTAALR-ITDGALVVV-D 130 (832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~d-------------------------f~~~----~~~~l~-~~D~ailVv-d 130 (832)
..++-...+.||||+|+.+ |... +...+. .+|.+|+|. |
T Consensus 85 ----------~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTD 154 (492)
T TIGR02836 85 ----------INEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTD 154 (492)
T ss_pred ----------ccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcC
Confidence 0122356899999999754 2111 555666 899999999 8
Q ss_pred CC------CccchhHHHHHHHHHcCCCCeEEEEECCCc
Q 003305 131 CI------EGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (832)
Q Consensus 131 a~------~g~~~qt~~~~~~~~~~~~p~ilviNKiD~ 162 (832)
++ ++.....+.++..+.+.++|.++++||.|-
T Consensus 155 gsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 155 GTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred CCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCC
Confidence 86 556666777888889999999999999994
No 302
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.69 E-value=1.1e-07 Score=99.16 Aligned_cols=116 Identities=21% Similarity=0.262 Sum_probs=76.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+.|-+|+++|-+|+|||||+++|...... .+...++ |+.....+..|+ .
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpk-----Va~YaFT-----------TL~P~iG~v~yd---------------d 242 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPK-----VAHYAFT-----------TLRPHIGTVNYD---------------D 242 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCc-----cccccee-----------eeccccceeecc---------------c
Confidence 34678999999999999999999554332 3322222 444444444554 1
Q ss_pred ceEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCc---cchhH-HHHHHHHHc-----CCCCeEEEEECC
Q 003305 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCVQT-ETVLRQALG-----ERIRPVLTVNKM 160 (832)
Q Consensus 97 ~~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g---~~~qt-~~~~~~~~~-----~~~p~ilviNKi 160 (832)
-..+++-|.||... +--...+-+..|+..++|||.+.+ .-.+. ..++..+.. ...|.++|+|||
T Consensus 243 f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 243 FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEecc
Confidence 23499999999753 233455666678999999999987 22222 333333332 245889999999
Q ss_pred Ccc
Q 003305 161 DRC 163 (832)
Q Consensus 161 D~~ 163 (832)
|.+
T Consensus 323 D~~ 325 (366)
T KOG1489|consen 323 DLP 325 (366)
T ss_pred Cch
Confidence 986
No 303
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.69 E-value=6.6e-08 Score=89.15 Aligned_cols=113 Identities=22% Similarity=0.280 Sum_probs=79.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
..+|+|.+|+|||+|+-++-.. .. .|+...+ |.++...-++.. ++...++
T Consensus 10 kllIigDsgVGKssLl~rF~dd--tF----s~sYitT----------iGvDfkirTv~i--------------~G~~VkL 59 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADD--TF----SGSYITT----------IGVDFKIRTVDI--------------NGDRVKL 59 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhc--cc----ccceEEE----------eeeeEEEEEeec--------------CCcEEEE
Confidence 4579999999999999777322 11 1211100 122222222222 3457899
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcC---CCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---RIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~---~~p~ilviNKiD~~ 163 (832)
.||||.|.+.|...+....+...++++|.|.+.|.+...-.-|-+-... .+|-++|.||.|.+
T Consensus 60 qIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 60 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDP 125 (198)
T ss_pred EEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCc
Confidence 9999999999999999999999999999999998877665545333333 45788999999977
No 304
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.68 E-value=1.9e-08 Score=102.23 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=92.0
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceE-------------------------eecCcccccccCcee
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR-------------------------MTDTRADEAERGITI 70 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~-------------------------~~d~~~~E~~rgiTi 70 (832)
.++...|.++|..||||||++.+|....+.-.. ...+. ++.....-..-||+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~--ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKT--PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccC--CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 455668899999999999999999654332111 11111 111222223333332
Q ss_pred eeeeEEEEeeccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHH------Hh--hccCcEEEEEcCCCccchhHH--
Q 003305 71 KSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTA------AL--RITDGALVVVDCIEGVCVQTE-- 140 (832)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~------~l--~~~D~ailVvda~~g~~~qt~-- 140 (832)
........+ ++.+..+.... ..+.+.||||||+.+-.....+ ++ ..--.+++|||....-++.|-
T Consensus 94 sLNLF~tk~---dqv~~~iek~~--~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS 168 (366)
T KOG1532|consen 94 SLNLFATKF---DQVIELIEKRA--EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS 168 (366)
T ss_pred hHHHHHHHH---HHHHHHHHHhh--cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH
Confidence 221111111 01111111222 2467899999999764322111 22 222456789998876666553
Q ss_pred ---HHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHHHHHHHHH
Q 003305 141 ---TVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVVEN 184 (832)
Q Consensus 141 ---~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 184 (832)
.....+.+.++|.|++.||+|....++-..|..-++.+++.+++
T Consensus 169 NMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~ 215 (366)
T KOG1532|consen 169 NMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNE 215 (366)
T ss_pred HHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHh
Confidence 23356668899999999999988555545566666777776664
No 305
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.5e-07 Score=85.37 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=78.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+-++.|+|...+|||+++-+.+..+-.+. .+. .-||..+... + |. ..+..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~a-------fvs-------TvGidFKvKT--v-yr-------------~~kRi 70 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSA-------FVS-------TVGIDFKVKT--V-YR-------------SDKRI 70 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccc-------eee-------eeeeeEEEeE--e-ee-------------cccEE
Confidence 34789999999999999988743221110 000 0122222221 1 21 12457
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HH---HcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA---LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~---~~~~~p~ilviNKiD~~ 163 (832)
++.+|||.|.+.+..-+-..+|.++|.||+.|.+..-+.....-|- ++ ...+.|+|++.||||+.
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD 139 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc
Confidence 8999999999999988889999999999999998765544433332 22 23478999999999986
No 306
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.64 E-value=3.7e-07 Score=94.38 Aligned_cols=133 Identities=15% Similarity=0.179 Sum_probs=77.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|.++|+.+|||||....+..+...- |+. .-|-|+......+.+. ....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-----------dT~----~L~~T~~ve~~~v~~~---------------~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-----------DTL----RLEPTIDVEKSHVRFL---------------SFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-----------GGG----G-----SEEEEEEECT---------------TSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-----------hcc----ccCCcCCceEEEEecC---------------CCcEE
Confidence 57899999999999998885432211 111 1123454444444332 25689
Q ss_pred EEEeCCCCCCcHHH-----HHHHhhccCcEEEEEcCC-CccchhH---HHHHHHHHc--CCCCeEEEEECCCcccccccC
Q 003305 101 NLIDSPGHVDFSSE-----VTAALRITDGALVVVDCI-EGVCVQT---ETVLRQALG--ERIRPVLTVNKMDRCFLELQV 169 (832)
Q Consensus 101 ~liDTPGh~df~~~-----~~~~l~~~D~ailVvda~-~g~~~qt---~~~~~~~~~--~~~p~ilviNKiD~~~~~~~~ 169 (832)
++||+||+.+|... ...-++.+++.|+|+|+. +.....- ...+..+.+ -+.++-+++.|||+. .
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l----~- 125 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL----S- 125 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS------
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC----C-
Confidence 99999999988765 466789999999999998 3322221 233344443 355677899999976 3
Q ss_pred CHHHHHHHHHHHHHHhhhhh
Q 003305 170 DGEEAYQTFSRVVENANVIM 189 (832)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l 189 (832)
.+.-...++.+.+.+...+
T Consensus 126 -~~~r~~~~~~~~~~i~~~~ 144 (232)
T PF04670_consen 126 -EDEREEIFRDIQQRIRDEL 144 (232)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHh
Confidence 2333334444444444443
No 307
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.64 E-value=1e-07 Score=96.54 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=79.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|..|+|||+|+-++++.. ..-++.+ |+..+... ... .++...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~-----------f~~~y~p-------tied~y~k-~~~------------v~~~~~ 51 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR-----------FVEDYDP-------TIEDSYRK-ELT------------VDGEVC 51 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc-----------cccccCC-------CccccceE-EEE------------ECCEEE
Confidence 4689999999999999999885432 1122222 22211100 000 123467
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHH-HHHH----HcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQA----LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~-~~~~----~~~~~p~ilviNKiD~~ 163 (832)
.+.|+||+|..+|...-...++.+||.++|++.++--+.+...- +.++ ....+|+++|.||+|+.
T Consensus 52 ~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~ 121 (196)
T KOG0395|consen 52 MLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE 121 (196)
T ss_pred EEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch
Confidence 88899999999999999999999999999999998665554322 2333 23457999999999987
No 308
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.60 E-value=3.2e-08 Score=83.77 Aligned_cols=71 Identities=35% Similarity=0.533 Sum_probs=58.4
Q ss_pred eeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eee
Q 003305 393 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLT 468 (832)
Q Consensus 393 l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~ 468 (832)
++++||+||+|++||+|++++ +.+.. +....+|.+|+.+++...++++.+.||+++++.++++.+ +.| |||
T Consensus 3 v~~grV~sG~l~~gd~v~~~~-~~~~~---~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i-~~Gdtl~ 74 (74)
T PF03144_consen 3 VATGRVYSGTLKKGDKVRVLP-NGTGK---KGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAI-RRGDTLT 74 (74)
T ss_dssp EEEEEEEESEEETTEEEEEES-TTTTE---ECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCS-STTEEEE
T ss_pred EEEEEEEEeEEcCCCEEEECc-cCCcc---eeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCc-CcCCEEC
Confidence 899999999999999999875 42211 123479999999999999999999999999999999832 445 775
No 309
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.59 E-value=1.3e-07 Score=93.42 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=46.1
Q ss_pred ceEEEEEeCCCCCCcH----HHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc-CCCCeEEEEECC
Q 003305 97 EYLINLIDSPGHVDFS----SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-ERIRPVLTVNKM 160 (832)
Q Consensus 97 ~~~i~liDTPGh~df~----~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~-~~~p~ilviNKi 160 (832)
...+.||||||..+.. ..+...+..+|++|+|+++......+....+.+... ..-..++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3468999999986532 347778899999999999999777665555555444 444567788985
No 310
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.57 E-value=2.6e-07 Score=84.69 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=81.7
Q ss_pred cccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
..+.+-.+|..+|--++||||++..| .++ |....-+..|..+ ..+.+.
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL-----------~sE----D~~hltpT~GFn~----k~v~~~------------- 59 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQL-----------KSE----DPRHLTPTNGFNT----KKVEYD------------- 59 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHH-----------ccC----ChhhccccCCcce----EEEeec-------------
Confidence 34455568999999999999999999 331 1111112223333 344444
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchh--HH---HHHHHHHcCCCCeEEEEECCCcc
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ--TE---TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~q--t~---~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
...++|++|.-|......-+.++....|+.|+|||+++.-... .+ ++++...-..+|+.++.||.|++
T Consensus 60 --g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 60 --GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred --CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 3689999999999999999999999999999999988742221 11 22233334467999999999988
No 311
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.54 E-value=5.1e-08 Score=90.79 Aligned_cols=115 Identities=19% Similarity=0.149 Sum_probs=80.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
-.+|+++|..=+|||+|+-+++...- . +.+ -.|+..+..+-... .++...
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkF--n----------~kH------lsTlQASF~~kk~n------------~ed~ra 62 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKF--N----------CKH------LSTLQASFQNKKVN------------VEDCRA 62 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhc--c----------hhh------HHHHHHHHhhcccc------------ccccee
Confidence 35789999999999999977754210 0 000 01333332222221 223456
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH----HHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~----~~~~~~~~p~ilviNKiD~~ 163 (832)
.++||||.|++.|-..---+.|.+|||+||.|.++.-+.|...-| +.+....+-+++|.||+|+.
T Consensus 63 ~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 63 DLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred eeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 789999999999987777788999999999999998777776555 34444556778899999986
No 312
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.9e-07 Score=88.90 Aligned_cols=128 Identities=17% Similarity=0.133 Sum_probs=88.4
Q ss_pred HHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhc-CccccccCCceEeecCcccccccCceeeeeeEEEEeeccchh
Q 003305 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA-GIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (832)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~-g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (832)
.-+.++|...+ -.+|.|+|.-++||||+++++=..- +. .|. ++ +.+. --|+.....+....
T Consensus 6 ~gl~~~~~~Ke-~y~vlIlgldnAGKttfLe~~Kt~~~~~-----~~~---l~--~~ki--~~tvgLnig~i~v~----- 67 (197)
T KOG0076|consen 6 SGLYKYMFKKE-DYSVLILGLDNAGKTTFLEALKTDFSKA-----YGG---LN--PSKI--TPTVGLNIGTIEVC----- 67 (197)
T ss_pred HHHHHHHhhhh-hhhheeeccccCCchhHHHHHHHHHHhh-----hcC---CC--HHHe--ecccceeecceeec-----
Confidence 34566666544 3599999999999999999983211 11 110 00 0000 01333333333332
Q ss_pred hccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-----chhHHHHHHHHHcCCCCeEEEEECC
Q 003305 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----CVQTETVLRQALGERIRPVLTVNKM 160 (832)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-----~~qt~~~~~~~~~~~~p~ilviNKi 160 (832)
...++|||--|.....+-.......|.++|+||||++.- ..+.+.+..+-...++|+++.+||-
T Consensus 68 -----------~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankq 136 (197)
T KOG0076|consen 68 -----------NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQ 136 (197)
T ss_pred -----------cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchh
Confidence 568999999999999999999999999999999999842 2233455556567899999999999
Q ss_pred Ccc
Q 003305 161 DRC 163 (832)
Q Consensus 161 D~~ 163 (832)
|+.
T Consensus 137 d~q 139 (197)
T KOG0076|consen 137 DLQ 139 (197)
T ss_pred hhh
Confidence 988
No 313
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.2e-06 Score=80.44 Aligned_cols=110 Identities=16% Similarity=0.090 Sum_probs=77.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
-..|..+|-.++||||++-.|........- -|+..+.-++.|. +.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~i-------------------pTvGFnvetVtyk----------------N~ 61 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTI-------------------PTVGFNVETVTYK----------------NV 61 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcccc-------------------cccceeEEEEEee----------------ee
Confidence 357889999999999999988432221111 0333333444554 78
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccc--hhHHHHHHHH---HcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--VQTETVLRQA---LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~--~qt~~~~~~~---~~~~~p~ilviNKiD~~ 163 (832)
++|++|.-|......-+..+....-+.|+|+|+.+.-. ..-.++-+.+ .....+.+++.||-|++
T Consensus 62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp 131 (180)
T KOG0071|consen 62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLP 131 (180)
T ss_pred EEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccc
Confidence 99999999999999999999999999999999987521 1111222222 12356788899999998
No 314
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.46 E-value=2.7e-06 Score=87.66 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=67.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|.++|..|+||||+.|.|+.....-.. .+ ....|.........+. +..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~--~~------------~~~~t~~~~~~~~~~~----------------g~~ 50 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG--SS------------AKSVTQECQKYSGEVD----------------GRQ 50 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS----TT------------TSS--SS-EEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec--cc------------cCCcccccceeeeeec----------------ceE
Confidence 48999999999999999999765532221 00 0112322222333343 789
Q ss_pred EEEEeCCCCCCc-------HHHHHHHh----hccCcEEEEEcCCCccchhHHHHHHHHHc-CC----CCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDF-------SSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALG-ER----IRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df-------~~~~~~~l----~~~D~ailVvda~~g~~~qt~~~~~~~~~-~~----~p~ilviNKiD~~ 163 (832)
+++|||||..|- ..++..++ ...++++||+... ..+...+..++.... .+ ...+|+++..|..
T Consensus 51 v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 51 VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 999999997542 23344433 3468899999988 666666666654432 12 2477888888866
No 315
>PRK13768 GTPase; Provisional
Probab=98.40 E-value=7.6e-07 Score=94.24 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=46.7
Q ss_pred eEEEEEeCCCCCCcHH---H---HHHHhhc--cCcEEEEEcCCCccchhHHHHHHHH-----HcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSS---E---VTAALRI--TDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~---~---~~~~l~~--~D~ailVvda~~g~~~qt~~~~~~~-----~~~~~p~ilviNKiD~~ 163 (832)
..+.+|||||+.++.. . ..+.+.. +|++++|+|+..+..+.+....... ...++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3689999999876432 2 2233333 8999999999887766654332222 15689999999999987
No 316
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1e-06 Score=97.01 Aligned_cols=107 Identities=27% Similarity=0.313 Sum_probs=85.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..-|+|+|++|+|||||+..|...- +.+.-.+.+--||+-+ ++..
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~-------------tk~ti~~i~GPiTvvs----------------------gK~R 113 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRF-------------TKQTIDEIRGPITVVS----------------------GKTR 113 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHH-------------HHhhhhccCCceEEee----------------------ccee
Confidence 4567899999999999999996532 1222222333355532 2467
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEE-EEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL-TVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~il-viNKiD~~ 163 (832)
+|+|+.|| +=...++.....||.++|+||+.-|..-.|.+.+..+...+.|.++ |++-+|+.
T Consensus 114 RiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 114 RITFLECP---SDLHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred EEEEEeCh---HHHHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccc
Confidence 99999999 3356788888999999999999999999999999999999999887 99999987
No 317
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.34 E-value=2.9e-06 Score=92.43 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=41.5
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH--HHHHHHHcCCCCeEEEEECCCcc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~--~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..++.+.||||+|...-. +. ....+|.+++|++...|-..|.. .+++.+ -++|+||+|+.
T Consensus 146 ~~g~d~viieT~Gv~qs~--~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaDl~ 207 (332)
T PRK09435 146 AAGYDVILVETVGVGQSE--TA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKADGD 207 (332)
T ss_pred ccCCCEEEEECCCCccch--hH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhccc
Confidence 347889999999987322 22 57789999999875555444432 233333 38999999987
No 318
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.34 E-value=5.2e-06 Score=88.91 Aligned_cols=138 Identities=20% Similarity=0.278 Sum_probs=76.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.||.++|..|+|||||++.|+......... ..+.......+..++......+ .. ++-...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l--~e------------~~~~l~ 64 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVEL--EE------------NGVKLN 64 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEE--EE------------TCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEe--cc------------CCcceE
Confidence 589999999999999999997653222110 0011111222233333332222 20 123568
Q ss_pred EEEEeCCCCCCcHHH--------------HHHHh-------------hccCcEEEEEcCC-CccchhHHHHHHHHHcCCC
Q 003305 100 INLIDSPGHVDFSSE--------------VTAAL-------------RITDGALVVVDCI-EGVCVQTETVLRQALGERI 151 (832)
Q Consensus 100 i~liDTPGh~df~~~--------------~~~~l-------------~~~D~ailVvda~-~g~~~qt~~~~~~~~~~~~ 151 (832)
+++|||||+.|.... ....+ ...|+|++.|+++ .|+.+.....++.+ ...+
T Consensus 65 LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L-s~~v 143 (281)
T PF00735_consen 65 LTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL-SKRV 143 (281)
T ss_dssp EEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH-TTTS
T ss_pred EEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh-cccc
Confidence 999999998753211 01111 1358899999986 58888888777665 4558
Q ss_pred CeEEEEECCCcccccccCCHHHHHHHHHHHHHH
Q 003305 152 RPVLTVNKMDRCFLELQVDGEEAYQTFSRVVEN 184 (832)
Q Consensus 152 p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 184 (832)
++|-||.|.|.. +++++...-+.+.+.
T Consensus 144 NvIPvIaKaD~l------t~~el~~~k~~i~~~ 170 (281)
T PF00735_consen 144 NVIPVIAKADTL------TPEELQAFKQRIRED 170 (281)
T ss_dssp EEEEEESTGGGS-------HHHHHHHHHHHHHH
T ss_pred cEEeEEeccccc------CHHHHHHHHHHHHHH
Confidence 888899999965 445554433333333
No 319
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.32 E-value=1.3e-07 Score=98.94 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=37.0
Q ss_pred EEEEEeCCCCCCcHHHHH------HHhh--ccCcEEEEEcCCCccchhHH-----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVT------AALR--ITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~------~~l~--~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.|+||||+.+|..... ..+. ..=++|+++|+..-..+..- ..+....+.++|.|.++||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 789999999988765433 2333 34468899999854333321 11122335789999999999988
No 320
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.30 E-value=1.9e-06 Score=94.55 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=60.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCc---eeeeeeEEEEeeccchhhccccCcCCC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGI---TIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgi---Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
..||||+|..|+|||||+|+|.+-.+ ..+.....|. |.... .+.+.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~--------------~d~~aA~tGv~etT~~~~--~Y~~p--------------- 83 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGH--------------EDEGAAPTGVVETTMEPT--PYPHP--------------- 83 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--T--------------TSTTS--SSSHSCCTS-E--EEE-S---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC--------------CCcCcCCCCCCcCCCCCe--eCCCC---------------
Confidence 45999999999999999999943211 1111111121 22111 11111
Q ss_pred CceEEEEEeCCCCC--CcHHHHH---HHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHV--DFSSEVT---AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~--df~~~~~---~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+--.+.+||.||.. +|..+.. -.+..-|..|+|.+. -.......+++.+.+.++|..+|-+|+|..
T Consensus 84 ~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~D 154 (376)
T PF05049_consen 84 KFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSD 154 (376)
T ss_dssp S-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHH
T ss_pred CCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEeccccc
Confidence 22368999999974 3432211 135677976666543 345555667788889999999999999973
No 321
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.29 E-value=1.5e-06 Score=78.49 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=66.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
++++++|.+|+|||||+++|.+..-...+ | -.+.|. +.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK--------------------T-----QAve~~----------------d~- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK--------------------T-----QAVEFN----------------DK- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc--------------------c-----ceeecc----------------Cc-
Confidence 57899999999999999999332211111 1 122332 11
Q ss_pred EEEEeCCC----CCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPG----h~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..||||| |..+.......+..+|.+++|-.+.++-+.-.-.. +.-...|+|-+++|.|+.
T Consensus 40 -~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f---~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 40 -GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGF---LDIGVKKVIGVVTKADLA 103 (148)
T ss_pred -cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCccc---ccccccceEEEEeccccc
Confidence 2489999 55666677788889999999999998754333222 223345677799999987
No 322
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.25 E-value=6.8e-07 Score=85.19 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=80.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...++.|+|..++||||++.+.+. |...+. ..++.-.|.. +|.|-+ ...
T Consensus 18 e~aiK~vivGng~VGKssmiqryCk--gifTkd-ykktIgvdfl----erqi~v-----------------------~~E 67 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCK--GIFTKD-YKKTIGVDFL----ERQIKV-----------------------LIE 67 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhc--cccccc-cccccchhhh----hHHHHh-----------------------hHH
Confidence 3456889999999999999998842 322221 0000001111 111111 112
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH---HHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR---QALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~---~~~~~~~p~ilviNKiD~~ 163 (832)
+..+.+|||.|..+|-.-+....|.|.+.+||.+.++-.+.....-|. +..-..+|.+++-||||+.
T Consensus 68 dvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 68 DVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred HHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 567789999999999999999999999999999999866655444443 2334679999999999987
No 323
>PTZ00258 GTP-binding protein; Provisional
Probab=98.25 E-value=3.1e-06 Score=93.94 Aligned_cols=104 Identities=18% Similarity=0.145 Sum_probs=63.6
Q ss_pred hcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccc-hhhccccC
Q 003305 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKG 91 (832)
Q Consensus 13 ~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~ 91 (832)
.+....-..|+|+|.+|+|||||+++|......+.+ .+ +.|+......+.+.... ..+.....
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n-~p---------------ftTi~p~~g~v~~~d~r~~~l~~~~~ 78 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAEN-FP---------------FCTIDPNTARVNVPDERFDWLCKHFK 78 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcCcccccC-CC---------------CCcccceEEEEecccchhhHHHHHcC
Confidence 344455668999999999999999999443221111 11 23444444444443100 01111112
Q ss_pred cCCCCceEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCC
Q 003305 92 ERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI 132 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~ 132 (832)
....-..++.|+||||... +.......++.+|++++|||+.
T Consensus 79 ~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 79 PKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2222245799999999653 3446778889999999999995
No 324
>PTZ00099 rab6; Provisional
Probab=98.24 E-value=6.1e-06 Score=82.44 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=53.2
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---CCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~~p~ilviNKiD~~ 163 (832)
+...++||||||+..|.......++.+|++|+|+|+++..+.+....| ..+.. ..+|++||.||+|+.
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 467899999999999999889999999999999999986544443333 22222 356788999999986
No 325
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.24 E-value=1e-05 Score=85.86 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=71.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+-.|+++|-+|+|||||++++......|.. ..++ |...+.-.+... ...
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIad-----YpFT-----------TL~PnLGvV~~~---------------~~~ 207 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIAD-----YPFT-----------TLVPNLGVVRVD---------------GGE 207 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccC-----Cccc-----------cccCcccEEEec---------------CCC
Confidence 557899999999999999999554433221 1111 222222222222 256
Q ss_pred EEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCcc----chhHHHHHHHHHc-----CCCCeEEEEECCCc
Q 003305 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGV----CVQTETVLRQALG-----ERIRPVLTVNKMDR 162 (832)
Q Consensus 99 ~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g~----~~qt~~~~~~~~~-----~~~p~ilviNKiD~ 162 (832)
.+.+-|.||..+ +-....+-+..|-..+.|||.+.-- ...-..++..+.+ ...|.+||+||||.
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~ 287 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL 287 (369)
T ss_pred cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence 799999999753 2233445555678889999998532 2222334433333 35789999999997
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
+
T Consensus 288 ~ 288 (369)
T COG0536 288 P 288 (369)
T ss_pred C
Confidence 6
No 326
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=7e-06 Score=77.83 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=79.3
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
--++.-++.++|--|+|||||+..| +... .|. .+ | |...+.-.+...
T Consensus 16 L~kK~gKllFlGLDNAGKTTLLHML--KdDr-----l~q-hv----P-------TlHPTSE~l~Ig-------------- 62 (193)
T KOG0077|consen 16 LYKKFGKLLFLGLDNAGKTTLLHML--KDDR-----LGQ-HV----P-------TLHPTSEELSIG-------------- 62 (193)
T ss_pred HhccCceEEEEeecCCchhhHHHHH--cccc-----ccc-cC----C-------CcCCChHHheec--------------
Confidence 3345668899999999999999887 1110 110 00 0 111111111222
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHH----HHHHcCCCCeEEEEECCCcccccccC
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL----RQALGERIRPVLTVNKMDRCFLELQV 169 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~----~~~~~~~~p~ilviNKiD~~~~~~~~ 169 (832)
+..++-+|.-||.--..-...++..+|++|++|||.+--..+. +..+ ....-.++|+++..||+|++ ++
T Consensus 63 --~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p----~a 136 (193)
T KOG0077|consen 63 --GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIP----YA 136 (193)
T ss_pred --CceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCC----Cc
Confidence 5688889999998888888889999999999999987543332 2222 22224679999999999999 77
Q ss_pred CHH
Q 003305 170 DGE 172 (832)
Q Consensus 170 ~~~ 172 (832)
..+
T Consensus 137 ~se 139 (193)
T KOG0077|consen 137 ASE 139 (193)
T ss_pred ccH
Confidence 533
No 327
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.23 E-value=1e-05 Score=75.42 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=80.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCCC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+.-+|.++|.-++|||+++++|++-+..+.....- ||...+ +++..+ .+-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~p----------------TiEDiY~~svet~-------------rga 58 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHP----------------TIEDIYVASVETD-------------RGA 58 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcccc----------------chhhheeEeeecC-------------CCh
Confidence 34588999999999999999999987665432111 222111 111111 112
Q ss_pred ceEEEEEeCCCCCCcHHHHH-HHhhccCcEEEEEcCCCccchhHHHHHHH-HH----cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVT-AALRITDGALVVVDCIEGVCVQTETVLRQ-AL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~-~~l~~~D~ailVvda~~g~~~qt~~~~~~-~~----~~~~p~ilviNKiD~~ 163 (832)
...+.|-||.|..+.-.+.- .++..+|+.+||.|..+--+.|-.+.+.. +. +..+|+++..||+|+.
T Consensus 59 rE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 59 REQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 45788999999998855554 56688999999999998777776555532 22 3456889999999985
No 328
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.19 E-value=3.5e-06 Score=88.51 Aligned_cols=111 Identities=23% Similarity=0.306 Sum_probs=74.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.-.|+++|.+++|||||+++|.+.... .+...+ .|...-...+.|. +.
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~se-----va~y~F-----------TTl~~VPG~l~Y~----------------ga 110 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSE-----VADYPF-----------TTLEPVPGMLEYK----------------GA 110 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCcc-----ccccCc-----------eecccccceEeec----------------Cc
Confidence 568999999999999999999443222 221111 1333334445554 88
Q ss_pred EEEEEeCCCCCCc-------HHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCC-----CeEEEEECCCc
Q 003305 99 LINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-----RPVLTVNKMDR 162 (832)
Q Consensus 99 ~i~liDTPGh~df-------~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~-----p~ilviNKiD~ 162 (832)
.|.|+|+||...= -.++...+|.||.+++|+|+.+.... -..+.+.+...++ |+-+.+.|-++
T Consensus 111 ~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~ 185 (365)
T COG1163 111 QIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKES 185 (365)
T ss_pred eEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEecc
Confidence 9999999997541 24688999999999999999875432 3344455554443 55566655444
No 329
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.18 E-value=3.7e-06 Score=89.36 Aligned_cols=96 Identities=23% Similarity=0.234 Sum_probs=57.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccc-hhhccccCcCCCCceEE
Q 003305 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERNGNEYLI 100 (832)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i 100 (832)
|+|+|.+|+|||||+++|......+.+ + .+.|+......+.+.... ..++........-...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n----------~------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAAN----------Y------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcccc----------c------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 589999999999999999554321111 0 123444444334333100 00111111111113469
Q ss_pred EEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCC
Q 003305 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 101 ~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~ 133 (832)
.++||||..+ +.......++.+|+++.|||+.+
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 9999999653 33456778899999999999853
No 330
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.15 E-value=9.3e-06 Score=69.17 Aligned_cols=71 Identities=28% Similarity=0.325 Sum_probs=55.6
Q ss_pred EEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEec
Q 003305 377 MLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG 456 (832)
Q Consensus 377 va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~g 456 (832)
.++|++++.++..|. ++++||++|+|++|+.+++.+.. . ....+|.+|+... .+++++.|||+|++.+
T Consensus 2 ~~~v~~~~~~~~~g~-v~~~rv~~G~l~~g~~v~~~~~~---~----~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~ 69 (83)
T cd01342 2 RALVFKVFKDKGRGT-VATGRVESGTLKKGDKVRVGPGG---G----GVKGKVKSLKRFK----GEVDEAVAGDIVGIVL 69 (83)
T ss_pred eeEEEEEEEeCCceE-EEEEEEeeCEEecCCEEEEecCC---c----eeEEEEeEeEecC----ceeceecCCCEEEEEE
Confidence 567888887776665 99999999999999999976420 1 1236888888665 6789999999999987
Q ss_pred ccc
Q 003305 457 LDQ 459 (832)
Q Consensus 457 l~~ 459 (832)
.+.
T Consensus 70 ~~~ 72 (83)
T cd01342 70 KDK 72 (83)
T ss_pred ccc
Confidence 554
No 331
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=1.6e-05 Score=72.71 Aligned_cols=115 Identities=21% Similarity=0.141 Sum_probs=74.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
|.+-.|+|..|+|||.|+-.+..+.-..+- | .||.....+-..+ ..+...
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadc------------p------htigvefgtriie------------vsgqki 60 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC------------P------HTIGVEFGTRIIE------------VSGQKI 60 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcC------------C------cccceecceeEEE------------ecCcEE
Confidence 567789999999999999888443211111 0 1221111111111 123367
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHHcCCCC---eEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGERIR---PVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~~~~~p---~ilviNKiD~~ 163 (832)
++.||||.|.+.|..-+.+..|.+-||++|.|.+..........|- -+...-.| ++++.||.|+.
T Consensus 61 klqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 8999999999999999999999999999999998754443333332 22222223 45688999986
No 332
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.13 E-value=8e-06 Score=84.03 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=79.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+...+++.|..|+|||+|++.++........ ++. ..|-|..... .. -+
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t---~k~----------K~g~Tq~in~---f~----------------v~ 182 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADT---SKS----------KNGKTQAINH---FH----------------VG 182 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhh---cCC----------CCccceeeee---ee----------------cc
Confidence 3458999999999999999999664322111 100 1222332221 11 15
Q ss_pred eEEEEEeCCCC----------CCcHHHHHHHh---hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGH----------VDFSSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh----------~df~~~~~~~l---~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.++|.||+ .|+..-+..++ +..=.+.+++|++.++++-....+.++.+.++|..+|+||||+.
T Consensus 183 ~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence 68899999993 24444444444 33445789999999999999999999999999999999999986
No 333
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.13 E-value=3.6e-05 Score=88.84 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=65.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|.+|+||||++|+|+......... . ..+ |.........+. +.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss-~-------------~~~-TTr~~ei~~~id----------------G~ 166 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDA-F-------------GMG-TTSVQEIEGLVQ----------------GV 166 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccC-C-------------CCC-ceEEEEEEEEEC----------------Cc
Confidence 4689999999999999999997654332221 0 011 222212222232 67
Q ss_pred EEEEEeCCCCCCcH------HHH----HHHhh--ccCcEEEEEcCCCccc-hhHHHHHHHHH---cCC--CCeEEEEECC
Q 003305 99 LINLIDSPGHVDFS------SEV----TAALR--ITDGALVVVDCIEGVC-VQTETVLRQAL---GER--IRPVLTVNKM 160 (832)
Q Consensus 99 ~i~liDTPGh~df~------~~~----~~~l~--~~D~ailVvda~~g~~-~qt~~~~~~~~---~~~--~p~ilviNKi 160 (832)
.+++|||||..+.. .++ ...+. ..|++|+|+.....-. ......++.+. ... ...||+++..
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThg 246 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHA 246 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCC
Confidence 89999999988642 222 22333 3687777765542211 12223333322 111 3578899999
Q ss_pred Ccc
Q 003305 161 DRC 163 (832)
Q Consensus 161 D~~ 163 (832)
|..
T Consensus 247 D~l 249 (763)
T TIGR00993 247 ASA 249 (763)
T ss_pred ccC
Confidence 987
No 334
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.13 E-value=8.9e-06 Score=89.27 Aligned_cols=98 Identities=23% Similarity=0.221 Sum_probs=59.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeecc-chhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMT-DDALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 98 (832)
.+|+++|.+|+|||||+++|......+.+ + .+.|+......+.+... ...+.........-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~n----------y------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAAN----------Y------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecc----------c------ccccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 47999999999999999999554311111 0 12344444333333310 0001111111122234
Q ss_pred EEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCC
Q 003305 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 99 ~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~ 133 (832)
.+.|+||||..+ +.......++.+|++++|||+.+
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 799999999653 33456778899999999999963
No 335
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.11 E-value=1.1e-05 Score=82.80 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=68.6
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCce-EeecCcccccccCcee---eeeeEEEEeeccchhhccc
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDV-RMTDTRADEAERGITI---KSTGISLYYEMTDDALKSY 89 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~-~~~d~~~~E~~rgiTi---~~~~~~~~~~~~~~~~~~~ 89 (832)
...+++|+++|+.|+|||||+++|+...+...+- ..+.. ...|....+ +.|..+ ...... ... .......
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic-~~~--~~~~~~~ 94 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKEC-HLD--AHMVAHA 94 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcc-cCC--hHHHHHH
Confidence 3569999999999999999999999874321110 00110 011221111 122211 111000 000 0000000
Q ss_pred cCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 90 KGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.......+..+.||+|.|..-... ......+..+.|+|+.++..... +.....+.+.++++||+|+.
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLA 161 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcc
Confidence 001111245788999999321111 11123455678999987654322 22233457889999999987
No 336
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=5e-05 Score=80.64 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=96.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCce-------EeecCcccccccCceeeeeeEEEEeec---cchh-hc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV-------RMTDTRADEAERGITIKSTGISLYYEM---TDDA-LK 87 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~-------~~~d~~~~E~~rgiTi~~~~~~~~~~~---~~~~-~~ 87 (832)
-.-|.++|+-..||||+++.|+...-.-. ..|-. .+|.-..++.-.|-+.-... ...|.. =++. ++
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~--riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~-~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGL--RIGPEPTTDRFIAVMHGDEEGSIPGNALVVDA-KKPFRGLNKFGNAFLN 134 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCcc--ccCCCCCcceeEEEEecCcccccCCceeeecC-CCchhhhhhhHHHHHH
Confidence 35688999999999999999986532111 12311 12222222222222221110 000000 0000 11
Q ss_pred cccCcCCC--CceEEEEEeCCCCC-----------CcHHHHHHHhhccCcEEEEEcCCC-ccchhHHHHHHHHHcCCCCe
Q 003305 88 SYKGERNG--NEYLINLIDSPGHV-----------DFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRP 153 (832)
Q Consensus 88 ~~~~~~~~--~~~~i~liDTPGh~-----------df~~~~~~~l~~~D~ailVvda~~-g~~~qt~~~~~~~~~~~~p~ 153 (832)
++.|+.-. --.+|+||||||.. ||..-...-+..+|.++|+.|+.. .+...+.+++.+.....-++
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 12222211 12479999999963 677777778889999999999975 67888999999888877788
Q ss_pred EEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhh
Q 003305 154 VLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIM 189 (832)
Q Consensus 154 ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (832)
-||+||.|.+ +++++.+.+..+.=.+..++
T Consensus 215 RVVLNKADqV------dtqqLmRVyGALmWslgkv~ 244 (532)
T KOG1954|consen 215 RVVLNKADQV------DTQQLMRVYGALMWSLGKVM 244 (532)
T ss_pred EEEecccccc------CHHHHHHHHHHHHHhhhhhc
Confidence 8999999955 55565555544444444433
No 337
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.08 E-value=1.3e-05 Score=87.07 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=40.7
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.+.||||||... .....+..+|.++++.+...|-..+. + ... -.++|.++++||+|+.
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~~--~-~~~-l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQG--I-KAG-LMEIADIYVVNKADGE 185 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHHH--H-HHH-HhhhccEEEEEccccc
Confidence 478999999999653 22345778899888865543322111 1 111 2467889999999987
No 338
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=1.1e-05 Score=89.13 Aligned_cols=135 Identities=18% Similarity=0.121 Sum_probs=75.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCcc-ccccCCceEeecCc---cccccc------CceeeeeeEEEEeeccchhhcc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTR---ADEAER------GITIKSTGISLYYEMTDDALKS 88 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i-~~~~~g~~~~~d~~---~~E~~r------giTi~~~~~~~~~~~~~~~~~~ 88 (832)
-.+++++|+.|+||||++..|....... .....+ ....|.. ..|+-+ |+.+......-.+ ...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~-lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l------~~~ 209 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA-LLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL------QLA 209 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecccccccHHHHHHHHHHHcCCceEecCCcccH------HHH
Confidence 4689999999999999999997642110 000011 1122222 112211 3222111000000 000
Q ss_pred ccCcCCCCceEEEEEeCCCCC---CcHHHHHHHhhccCc---EEEEEcCCCccchhHHHHHHHHHcCCCCe-------EE
Q 003305 89 YKGERNGNEYLINLIDSPGHV---DFSSEVTAALRITDG---ALVVVDCIEGVCVQTETVLRQALGERIRP-------VL 155 (832)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~---df~~~~~~~l~~~D~---ailVvda~~g~~~qt~~~~~~~~~~~~p~-------il 155 (832)
. ....++.+.||||||.. ++..+....+..++. .+||++++.+....+..++.+....+.|. =+
T Consensus 210 l---~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~ 286 (374)
T PRK14722 210 L---AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGC 286 (374)
T ss_pred H---HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEE
Confidence 0 11135688999999976 455555666655544 49999999987776666666654443332 36
Q ss_pred EEECCCcc
Q 003305 156 TVNKMDRC 163 (832)
Q Consensus 156 viNKiD~~ 163 (832)
+++|+|-.
T Consensus 287 I~TKlDEt 294 (374)
T PRK14722 287 ILTKLDEA 294 (374)
T ss_pred EEeccccC
Confidence 78999965
No 339
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.03 E-value=9.4e-05 Score=79.57 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=79.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.-..||.++|..|.||||++|.|+...-. .. .+ .-+..+.-.+.++.+......+.- ++-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~-~~--~~---~~~~~~~~~~~~~~i~~~~~~l~e--------------~~~ 80 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLV-DE--TE---IDDIRAEGTSPTLEIKITKAELEE--------------DGF 80 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhcc-CC--CC---ccCcccccCCcceEEEeeeeeeec--------------CCe
Confidence 44579999999999999999999877211 11 00 011111113333444433332221 223
Q ss_pred ceEEEEEeCCCCCCcHHH--------------HHHHh-------h-------ccCcEEEEEcCC-CccchhHHHHHHHHH
Q 003305 97 EYLINLIDSPGHVDFSSE--------------VTAAL-------R-------ITDGALVVVDCI-EGVCVQTETVLRQAL 147 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~--------------~~~~l-------~-------~~D~ailVvda~-~g~~~qt~~~~~~~~ 147 (832)
...+|+|||||..||+.. -..++ | ..++|++.+-.+ +|+.+.....++.+.
T Consensus 81 ~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls 160 (373)
T COG5019 81 HLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS 160 (373)
T ss_pred EEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 568999999999886532 11111 1 257788888765 689999888877653
Q ss_pred cCCCCeEEEEECCCcc
Q 003305 148 GERIRPVLTVNKMDRC 163 (832)
Q Consensus 148 ~~~~p~ilviNKiD~~ 163 (832)
..+.+|=||-|.|..
T Consensus 161 -~~vNlIPVI~KaD~l 175 (373)
T COG5019 161 -KRVNLIPVIAKADTL 175 (373)
T ss_pred -cccCeeeeeeccccC
Confidence 457788899999966
No 340
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.97 E-value=2.3e-05 Score=87.93 Aligned_cols=98 Identities=22% Similarity=0.184 Sum_probs=56.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeec--cchhhcccc------C
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM--TDDALKSYK------G 91 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~--~~~~~~~~~------~ 91 (832)
.+|+|+|.+|+|||||+++|......+. ++. +.|+........... .+.-+.... +
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~----------~y~------f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~ 65 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIA----------NYP------FTTIDPNVGVAYVRVECPCKELGVKCNPRNGKC 65 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccc----------CCC------CcceeeeeeeeeeccCCchhhhhhhhccccccc
Confidence 4799999999999999999954322111 110 122222221111100 000000000 0
Q ss_pred cCCCCceEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCC
Q 003305 92 ERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~ 133 (832)
..+.....++++||||..+ +.....+.++.||++++|||+..
T Consensus 66 ~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 66 IDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred cCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 1112245789999999642 33467778999999999999974
No 341
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.96 E-value=2e-05 Score=85.78 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCC----CcH---HHHHHHhhccCcEEEEEcCCC
Q 003305 97 EYLINLIDSPGHV----DFS---SEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 97 ~~~i~liDTPGh~----df~---~~~~~~l~~~D~ailVvda~~ 133 (832)
...+.++||||.. .+. ......++.||++++|+|+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4679999999973 333 356678999999999999975
No 342
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.94 E-value=7.8e-06 Score=74.22 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=56.5
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
+++..++.+|||.|++.|.+-+....|.+|+.+|+.|....-+...-..| .++. +..+.+.++.||+|+.
T Consensus 43 ~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 43 DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 45678999999999999999999999999999999999887666555444 2222 3446778899999985
No 343
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.89 E-value=4.9e-05 Score=73.57 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=40.4
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCC
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 161 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD 161 (832)
.++.+.||||||.. ......++.||-+++|+....+-.... ........--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~----~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQA----IKAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHH----hhhhHhhhcCEEEEeCCC
Confidence 36889999999964 344568999999999998763222222 122233344588999998
No 344
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.88 E-value=8.1e-06 Score=79.29 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=26.9
Q ss_pred HHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+.+..+...... +.++++|++|+|||||+|+|+...
T Consensus 24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 334444443344 789999999999999999997753
No 345
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.86 E-value=0.00044 Score=69.66 Aligned_cols=125 Identities=21% Similarity=0.225 Sum_probs=71.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.--.||.++|.+|.|||||++.|... +..+. .+ .|. ..|+-+. |+....++-... .++-
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s-~v~~~--s~----~~~-~~~p~pk-T~eik~~thvie------------E~gV 102 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKS-HVSDS--SS----SDN-SAEPIPK-TTEIKSITHVIE------------EKGV 102 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHH-HHhhc--cC----CCc-ccCcccc-eEEEEeeeeeee------------ecce
Confidence 34579999999999999999998543 22221 11 111 1122222 333332222222 1222
Q ss_pred ceEEEEEeCCCCCCcHHH--------------HHHHh-------h-------ccCcEEEEEcCCC-ccchhHHHHHHHHH
Q 003305 97 EYLINLIDSPGHVDFSSE--------------VTAAL-------R-------ITDGALVVVDCIE-GVCVQTETVLRQAL 147 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~--------------~~~~l-------~-------~~D~ailVvda~~-g~~~qt~~~~~~~~ 147 (832)
..++++|||||+.|++.. -+..| | ...++++-|..+- ...+-..+.+..+.
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt 182 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLT 182 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHh
Confidence 458999999999875421 11111 1 2467888887763 45566666654432
Q ss_pred cCCCCeEEEEECCCcc
Q 003305 148 GERIRPVLTVNKMDRC 163 (832)
Q Consensus 148 ~~~~p~ilviNKiD~~ 163 (832)
+ -+.+|-||-|.|-.
T Consensus 183 ~-vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 183 E-VVNVVPVIAKADTL 197 (336)
T ss_pred h-hheeeeeEeecccc
Confidence 2 24556689999976
No 346
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.86 E-value=5.4e-05 Score=83.59 Aligned_cols=115 Identities=23% Similarity=0.232 Sum_probs=66.7
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~ 94 (832)
..+.|++.++|-+|+||||+.+.+....-. +-.+ -.|..+-. .++.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradve----------vqpY-------aFTTksL~vGH~d---------------- 211 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDE----------VQPY-------AFTTKLLLVGHLD---------------- 211 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccc----------cCCc-------ccccchhhhhhhh----------------
Confidence 356899999999999999988776221111 1111 11222111 1122
Q ss_pred CCceEEEEEeCCCCCCcH--------HHHHHHhhcc-CcEEEEEcCCC--ccchhHH-HHHHHHH--cCCCCeEEEEECC
Q 003305 95 GNEYLINLIDSPGHVDFS--------SEVTAALRIT-DGALVVVDCIE--GVCVQTE-TVLRQAL--GERIRPVLTVNKM 160 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~--------~~~~~~l~~~-D~ailVvda~~--g~~~qt~-~~~~~~~--~~~~p~ilviNKi 160 (832)
.+-..|.+|||||.-|=- ...++|+... -++++++|.++ |.+.... .++..+. -.+.|.|+|+||+
T Consensus 212 ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~ 291 (620)
T KOG1490|consen 212 YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKI 291 (620)
T ss_pred hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecc
Confidence 234579999999976522 2234555444 34678888876 3332221 1222222 2467899999999
Q ss_pred Ccc
Q 003305 161 DRC 163 (832)
Q Consensus 161 D~~ 163 (832)
|..
T Consensus 292 D~m 294 (620)
T KOG1490|consen 292 DAM 294 (620)
T ss_pred ccc
Confidence 976
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.82 E-value=2.9e-05 Score=75.99 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
..+|+++|.+|+|||||+|+|+....
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 45899999999999999999976543
No 348
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=3.4e-05 Score=72.31 Aligned_cols=67 Identities=27% Similarity=0.192 Sum_probs=50.6
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH----cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~~p~ilviNKiD~~ 163 (832)
..++.+|||.|++.|.+.+-.-.|.|-|.+|+.|.+..-+.-...-| .++. -++--++++.||.|+.
T Consensus 66 rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~ 137 (219)
T KOG0081|consen 66 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE 137 (219)
T ss_pred EEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh
Confidence 45788999999999999999999999999999999875444333333 3322 2233467899999987
No 349
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.00032 Score=76.24 Aligned_cols=138 Identities=19% Similarity=0.264 Sum_probs=83.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
-.++-++|..|.|||||+|.|+...-. +...+ +..+.+..+..++....+.+.- ++-..
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~------~~~~~-~~~~~~~~~t~~i~~~~~~iee--------------~g~~l 79 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLS------GNREV-PGASERIKETVEIESTKVEIEE--------------NGVKL 79 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhcc------CCccc-CCcccCccccceeeeeeeeecC--------------CCeEE
Confidence 468999999999999999999776211 11011 2222222223333333222211 12345
Q ss_pred EEEEEeCCCCCCcHHH--------------HHHHh-----------h--ccCcEEEEEcCC-CccchhHHHHHHHHHcCC
Q 003305 99 LINLIDSPGHVDFSSE--------------VTAAL-----------R--ITDGALVVVDCI-EGVCVQTETVLRQALGER 150 (832)
Q Consensus 99 ~i~liDTPGh~df~~~--------------~~~~l-----------~--~~D~ailVvda~-~g~~~qt~~~~~~~~~~~ 150 (832)
.+|+|||||..|+... ...++ . ..++|++-|..+ +|+.+.....++.. ..+
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l-~~~ 158 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL-SKK 158 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH-hcc
Confidence 7899999999875431 11111 1 367899999876 57888888777654 455
Q ss_pred CCeEEEEECCCcccccccCCHHHHHHHHHHHHHH
Q 003305 151 IRPVLTVNKMDRCFLELQVDGEEAYQTFSRVVEN 184 (832)
Q Consensus 151 ~p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 184 (832)
+.+|-||-|.|.. ..++....-.++.+.
T Consensus 159 vNiIPVI~KaD~l------T~~El~~~K~~I~~~ 186 (366)
T KOG2655|consen 159 VNLIPVIAKADTL------TKDELNQFKKRIRQD 186 (366)
T ss_pred ccccceeeccccC------CHHHHHHHHHHHHHH
Confidence 7888899999955 444544443444333
No 350
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.79 E-value=4.3e-05 Score=75.88 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
..+++++|.+|+|||||+|+|....
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~ 141 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSR 141 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc
Confidence 3589999999999999999996544
No 351
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.78 E-value=9.2e-05 Score=83.46 Aligned_cols=112 Identities=19% Similarity=0.157 Sum_probs=76.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|..|+|||||+-+|+...-.-.- + ++++ -|+|-.... .....
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~V--P---~rl~--------~i~IPadvt-------------------Pe~vp 57 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAV--P---RRLP--------RILIPADVT-------------------PENVP 57 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccc--c---ccCC--------ccccCCccC-------------------cCcCc
Confidence 47899999999999999999665421111 0 1111 134432111 12345
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCC-----ccchhHHHHHHHHH--cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----GVCVQTETVLRQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~-----g~~~qt~~~~~~~~--~~~~p~ilviNKiD~~ 163 (832)
..|+||+-..+-...+...++.||.+++|.++++ +++..-..++++.. ..++|+|+|.||.|..
T Consensus 58 t~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~ 128 (625)
T KOG1707|consen 58 TSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG 128 (625)
T ss_pred eEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc
Confidence 8899999877777778889999999999997775 44444344445443 2568999999999986
No 352
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.78 E-value=0.00016 Score=71.93 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=41.1
Q ss_pred CceEEEEEeCCCCCCcHHHHHHH----h--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAA----L--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~----l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.+.+|||||...+..+.... . ...|.+++|+|+..+.... ..++++....+ ..-+++||+|..
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCC-CCEEEEECCcCC
Confidence 35678899999986443332222 2 2489999999997543222 33334433444 345788999976
No 353
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.75 E-value=0.00052 Score=68.59 Aligned_cols=66 Identities=23% Similarity=0.180 Sum_probs=53.9
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+.+.+|||||... ..+..++..+|.+++|+.....-.......++.+...+.|..+++||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 478899999997643 366778899999999999887655566777788888888888999999965
No 354
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.74 E-value=9.4e-05 Score=69.92 Aligned_cols=112 Identities=26% Similarity=0.262 Sum_probs=73.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCcccc---ccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~---~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.++.+||..-+|||+|+..+ ..|.... ...| .|... |-|.+ ..+.
T Consensus 9 frlivigdstvgkssll~~f--t~gkfaelsdptvg----vdffa----rlie~----------------------~pg~ 56 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYF--TEGKFAELSDPTVG----VDFFA----RLIEL----------------------RPGY 56 (213)
T ss_pred EEEEEEcCCcccHHHHHHHH--hcCcccccCCCccc----hHHHH----HHHhc----------------------CCCc
Confidence 46779999999999999877 3332221 1111 01100 00111 1223
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHH-HH-cCC---CC-eEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL-GER---IR-PVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~-~~-~~~---~p-~ilviNKiD~~ 163 (832)
..++.||||.|++.|..-+.+..|.+=|+++|.|.+..-+..-.+.|-. |. ..+ .+ ..+|..|.|+.
T Consensus 57 riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 57 RIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 5688999999999999999999999999999999998666655555522 21 112 12 33689999986
No 355
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.72 E-value=0.00023 Score=80.08 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=40.9
Q ss_pred CceEEEEEeCCCCCCc----HHHHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df----~~~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.+.||||||.... ..++....+ ..|-++||+||.-|-... ...+.....--+--+++||+|-.
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~--~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE--AQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH--HHHHHHHhccCCcEEEEECccCC
Confidence 3678999999997643 344444333 357799999998774331 12222222222456899999964
No 356
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.69 E-value=4.3e-05 Score=79.05 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=78.1
Q ss_pred HHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCc---------ccc--ccCCceEeecCc---ccccccCceeeee
Q 003305 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGI---------IAQ--EVAGDVRMTDTR---ADEAERGITIKST 73 (832)
Q Consensus 8 ~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~---------i~~--~~~g~~~~~d~~---~~E~~rgiTi~~~ 73 (832)
-++.+.....+-..|+|-|++|+|||||+++|...-.. ++. ...|....-|.. ......|.-|.+.
T Consensus 18 ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~ 97 (266)
T PF03308_consen 18 LLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSM 97 (266)
T ss_dssp HHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE
T ss_pred HHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeec
Confidence 34555555556779999999999999999999764211 011 011111011111 0111223333222
Q ss_pred eEEEEeeccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH--HHHHHHHHcCCC
Q 003305 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLRQALGERI 151 (832)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt--~~~~~~~~~~~~ 151 (832)
...-....-.........-.+.-++.+.||-|-|-.--. + .-...+|..++|+-...|-..|. .-+++.+
T Consensus 98 atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE--~-~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia----- 169 (266)
T PF03308_consen 98 ATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSE--V-DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA----- 169 (266)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHH--H-HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH------
T ss_pred CcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccH--H-HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc-----
Confidence 111000000000000000112236789999999965422 2 23678999999998887766554 3445544
Q ss_pred CeEEEEECCCcccccccCCHHHHHHHHHHHHH
Q 003305 152 RPVLTVNKMDRCFLELQVDGEEAYQTFSRVVE 183 (832)
Q Consensus 152 p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~ 183 (832)
=|+|+||.|+. +++ ..+..++..+.
T Consensus 170 -Di~vVNKaD~~----gA~--~~~~~l~~~l~ 194 (266)
T PF03308_consen 170 -DIFVVNKADRP----GAD--RTVRDLRSMLH 194 (266)
T ss_dssp -SEEEEE--SHH----HHH--HHHHHHHHHHH
T ss_pred -cEEEEeCCChH----HHH--HHHHHHHHHHh
Confidence 38999999987 543 34444444443
No 357
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=6.1e-05 Score=69.75 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=78.6
Q ss_pred HHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhc
Q 003305 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (832)
Q Consensus 8 ~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (832)
.++.+.... +--+|-++|-.|+||||+.-+| . .|+...+- -|+..+..++.|
T Consensus 8 ~f~~L~g~e-~e~rililgldGaGkttIlyrl--q--------vgevvttk---------Ptigfnve~v~y-------- 59 (182)
T KOG0072|consen 8 LFKALQGPE-REMRILILGLDGAGKTTILYRL--Q--------VGEVVTTK---------PTIGFNVETVPY-------- 59 (182)
T ss_pred HHHHhcCCc-cceEEEEeeccCCCeeEEEEEc--c--------cCcccccC---------CCCCcCcccccc--------
Confidence 344454433 4457789999999999988666 2 22211110 133333333333
Q ss_pred cccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH--HHHHHHHH---cCCCCeEEEEECCCc
Q 003305 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLRQAL---GERIRPVLTVNKMDR 162 (832)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt--~~~~~~~~---~~~~p~ilviNKiD~ 162 (832)
++-+++++|.-|......-+..+....|.+|+|||+++--.... .++..++. -.+..+++|.||+|.
T Consensus 60 --------KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~ 131 (182)
T KOG0072|consen 60 --------KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY 131 (182)
T ss_pred --------ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc
Confidence 47789999999999999999999999999999999987432222 22222222 234567789999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 132 ~ 132 (182)
T KOG0072|consen 132 S 132 (182)
T ss_pred h
Confidence 7
No 358
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.65 E-value=4.7e-05 Score=77.28 Aligned_cols=65 Identities=23% Similarity=0.206 Sum_probs=40.3
Q ss_pred ceEEEEEeCCCCCCcHH----HHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSS----EVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~----~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++.+.||||||+..... ++..-+. ..+-++||+|++.+..... .+.......++. =++++|+|-.
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 46789999999765443 3332222 4577899999998754332 444443334444 4569999965
No 359
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.63 E-value=0.00026 Score=69.34 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=39.0
Q ss_pred ceEEEEEeCCCCCCcHHH--------HHHHhhccCcEEEEEcCCCccchh--HHHHHHHHHcCCCCeEEEEECCCc
Q 003305 97 EYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQ--TETVLRQALGERIRPVLTVNKMDR 162 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~--------~~~~l~~~D~ailVvda~~g~~~q--t~~~~~~~~~~~~p~ilviNKiD~ 162 (832)
...+.+|||||..+-... ...+.-.+|+++.|||+....... .....+|+.. -=++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CCEEEEecccC
Confidence 467789999998753222 223445689999999987543211 1222233332 23679999995
No 360
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.63 E-value=0.00021 Score=76.30 Aligned_cols=135 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-eEe--ecCc-c--cc------cccCceeeeeeEEEEeec-cch
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRM--TDTR-A--DE------AERGITIKSTGISLYYEM-TDD 84 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~~--~d~~-~--~E------~~rgiTi~~~~~~~~~~~-~~~ 84 (832)
..+.|+++|+.|+||||++..|..... + .|. +.. .|.. . .| ..+|+.+... .... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~--~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~----~~~~dp~~ 141 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---K--QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQ----KEGADPAA 141 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---h--cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeC----CCCCCHHH
Confidence 357899999999999999999864321 1 121 222 2321 0 11 2223222100 0000 000
Q ss_pred hhccccCcCCCCceEEEEEeCCCCCCcHHH----HHH---Hhh-----ccCcEEEEEcCCCccchhHHHHHHHHHcCCCC
Q 003305 85 ALKSYKGERNGNEYLINLIDSPGHVDFSSE----VTA---ALR-----ITDGALVVVDCIEGVCVQTETVLRQALGERIR 152 (832)
Q Consensus 85 ~~~~~~~~~~~~~~~i~liDTPGh~df~~~----~~~---~l~-----~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p 152 (832)
...........+++.+.||||||....... +.. ... .+|..+||+|++.|-..- .......... -+
T Consensus 142 ~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~~-~~ 219 (272)
T TIGR00064 142 VAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL-EQAKVFNEAV-GL 219 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH-HHHHHHHhhC-CC
Confidence 000000001124678999999998753332 222 222 389999999998653221 1111111112 13
Q ss_pred eEEEEECCCcc
Q 003305 153 PVLTVNKMDRC 163 (832)
Q Consensus 153 ~ilviNKiD~~ 163 (832)
.-+++||+|-.
T Consensus 220 ~g~IlTKlDe~ 230 (272)
T TIGR00064 220 TGIILTKLDGT 230 (272)
T ss_pred CEEEEEccCCC
Confidence 45799999964
No 361
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.62 E-value=0.00047 Score=59.69 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=50.2
Q ss_pred CeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE
Q 003305 375 PLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (832)
Q Consensus 375 p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i 454 (832)
||.+.|..++..+ .|. +..+||.+|++++||.|+++..+ . ..+|..|.. ...++++|.|||.+++
T Consensus 1 p~r~~V~~v~~~~-~g~-vv~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~si~~----~~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-GGT-VVSGKVESGSIQKGDTLLVMPSK----E-----SVEVKSIYV----DDEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-CCc-EEEEEEeeeEEeCCCEEEEeCCC----c-----EEEEEEEEE----CCeECCEECCCCEEEE
Confidence 4666677666555 565 88999999999999999986422 1 258888764 3478999999999986
Q ss_pred e
Q 003305 455 V 455 (832)
Q Consensus 455 ~ 455 (832)
.
T Consensus 66 ~ 66 (83)
T cd03698 66 K 66 (83)
T ss_pred E
Confidence 3
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.59 E-value=0.00043 Score=75.58 Aligned_cols=135 Identities=15% Similarity=0.076 Sum_probs=69.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEe--ecCcc---------cccccCceeeeeeEEEEeeccch-hh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM--TDTRA---------DEAERGITIKSTGISLYYEMTDD-AL 86 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~--~d~~~---------~E~~rgiTi~~~~~~~~~~~~~~-~~ 86 (832)
...|+++|+.|+||||++..|....... .+++.. .|... ....+++.+... ....... ..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~----g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~----~~~~dpa~~v 185 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ----GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ----KEGADPASVA 185 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc----CCeEEEEecCccchhhHHHHHHHHHHcCceEEEe----CCCCCHHHHH
Confidence 4688999999999999999996543211 122222 22211 122334332111 0100000 00
Q ss_pred ccccCcCCCCceEEEEEeCCCCCCc----HHHHHHHhh--------ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE
Q 003305 87 KSYKGERNGNEYLINLIDSPGHVDF----SSEVTAALR--------ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV 154 (832)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df----~~~~~~~l~--------~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i 154 (832)
..........++.+.||||||.... +.++....+ ..+..+||+||+.|..... .+.... ..--+.-
T Consensus 186 ~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~-~~~~~~g 263 (318)
T PRK10416 186 FDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFH-EAVGLTG 263 (318)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHH-hhCCCCE
Confidence 0000011224678999999997643 334444333 3567899999997643222 111111 1112345
Q ss_pred EEEECCCcc
Q 003305 155 LTVNKMDRC 163 (832)
Q Consensus 155 lviNKiD~~ 163 (832)
+++||+|..
T Consensus 264 iIlTKlD~t 272 (318)
T PRK10416 264 IILTKLDGT 272 (318)
T ss_pred EEEECCCCC
Confidence 899999954
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.58 E-value=0.00011 Score=71.69 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
...+++++|++|+|||||+|+|+...
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccc
Confidence 45789999999999999999997654
No 364
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.55 E-value=0.00018 Score=73.33 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=36.4
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCe--EEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP--VLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~--ilviNKiD~~ 163 (832)
.....+|+|-|.. ...... -..+|++|+|+|+.++...+.. ...++.. ++++||+|+.
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~ 150 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLA 150 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhcc
Confidence 3466789999932 111111 1236899999999987653321 0123344 8999999987
No 365
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.54 E-value=0.00059 Score=60.17 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=60.6
Q ss_pred CCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEE
Q 003305 373 NGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 452 (832)
Q Consensus 373 ~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~ 452 (832)
+.||.+.|..++..+..|. +..+||.+|+++.||+++++..+ . ..+|.+|... ..++++|.|||.|
T Consensus 2 ~~p~r~~V~~vf~~~g~g~-vv~G~v~~G~i~~gd~v~i~P~~----~-----~~~V~sI~~~----~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGT-VPVGRVETGVLKPGMVVTFAPAG----V-----TGEVKSVEMH----HEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCceE-EEEEEEecceeecCCEEEECCCC----c-----EEEEEEEEEC----CcCcCEECCCCEE
Confidence 3578888888887666675 88999999999999999986422 1 2688888742 4568999999999
Q ss_pred EEe--ccccccccce-eeecC
Q 003305 453 AMV--GLDQFITKNA-TLTNE 470 (832)
Q Consensus 453 ~i~--gl~~~~~~tg-Tl~~~ 470 (832)
++. +++....+.| .||+.
T Consensus 68 ~i~l~~i~~~~v~~G~vl~~~ 88 (91)
T cd03693 68 GFNVKNVSKKDIKRGDVAGDS 88 (91)
T ss_pred EEEECCCCHHHcCCcCEEccC
Confidence 884 4433323445 55543
No 366
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.53 E-value=0.00013 Score=70.06 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.+++++|.+|+|||||+|+|+...
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~ 107 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKK 107 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999996543
No 367
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.53 E-value=0.0002 Score=71.79 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=75.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
-|+|.++|..|+|||++-..+...-.+-+.... |-||+....++.|- .+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rl---------------g~tidveHsh~Rfl---------------Gnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRL---------------GATIDVEHSHVRFL---------------GNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhcc---------------CCcceeeehhhhhh---------------hhh
Confidence 478999999999999987766432221111112 34665555555543 246
Q ss_pred EEEEEeCCCCCCcHHHHHH-----HhhccCcEEEEEcCCCccchhHHHH----HHHHHcC--CCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTA-----ALRITDGALVVVDCIEGVCVQTETV----LRQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~-----~l~~~D~ailVvda~~g~~~qt~~~----~~~~~~~--~~p~ilviNKiD~~ 163 (832)
.+|+||+-|...|+....+ .++..+..+.|.|+...-......+ ++...+. ..++.+++.|||+.
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 8999999999988766544 5678899999999976433332222 3333222 23466799999998
No 368
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00027 Score=68.86 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=77.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
.++.++++|..+.||||..++.+.. .... ..--|+....-.+.+. .+.+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltg--eFe~----------------~y~at~Gv~~~pl~f~------------tn~g~ 58 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTG--EFEK----------------TYPATLGVEVHPLLFD------------TNRGQ 58 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcc--ccee----------------cccCcceeEEeeeeee------------cccCc
Confidence 4789999999999999999988431 1111 1111333322222222 11124
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH--HHH-cCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR--QAL-GERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~--~~~-~~~~p~ilviNKiD~~ 163 (832)
.+++.|||.|.+.|...--.+.-.+-+|+++.|.+.-+..+...-|. .+. ..++|++++.||.|-.
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 78999999999998877666667788999999998766655543332 222 3458999999999954
No 369
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.48 E-value=0.00028 Score=80.02 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=40.3
Q ss_pred eEEEEEeCCCCCCcHHHH------HHHhhccCcEEEEEcCCCccchhHHHHHHHHHcC--CCCe-EEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEV------TAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRP-VLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~------~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~~p~-ilviNKiD~~ 163 (832)
+.+.||||||........ ..++..+|.++||+|++.|. ..++++... .+++ -+++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 478999999976654332 23455689999999998862 222333332 2444 3789999954
No 370
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00026 Score=77.92 Aligned_cols=135 Identities=14% Similarity=0.098 Sum_probs=66.7
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-e--EeecCcc---cccccCc--eeeeeeEEEEeeccchhhc-c
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-V--RMTDTRA---DEAERGI--TIKSTGISLYYEMTDDALK-S 88 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~--~~~d~~~---~E~~rgi--Ti~~~~~~~~~~~~~~~~~-~ 88 (832)
..+.|+++|+.|+||||++..|..... . .|. + ...|... .|+-+.. ... +.+........+. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~--~GkkVglI~aDt~RiaAvEQLk~yae~lg---ipv~v~~d~~~L~~a 311 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---G--KKKTVGFITTDHSRIGTVQQLQDYVKTIG---FEVIAVRDEAAMTRA 311 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---H--cCCcEEEEecCCcchHHHHHHHHHhhhcC---CcEEecCCHHHHHHH
Confidence 347899999999999999999964321 1 111 1 1222211 1111110 011 1111000111111 1
Q ss_pred ccCcCCCCceEEEEEeCCCCCC----cHHHHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCC
Q 003305 89 YKGERNGNEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMD 161 (832)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~d----f~~~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD 161 (832)
+.......++.+.||||||... .+.++...+. ..|..+||+||+-+-... ..+++.... ++ -=++++|+|
T Consensus 312 L~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~-~~i~~~F~~--~~idglI~TKLD 388 (436)
T PRK11889 312 LTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM-IEIITNFKD--IHIDGIVFTKFD 388 (436)
T ss_pred HHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH-HHHHHHhcC--CCCCEEEEEccc
Confidence 1111111246889999999754 3444444443 346789999987432221 223332222 33 237899999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
-.
T Consensus 389 ET 390 (436)
T PRK11889 389 ET 390 (436)
T ss_pred CC
Confidence 65
No 371
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.46 E-value=0.00022 Score=72.18 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
..+++++|.+|+|||||+|+|+...
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998754
No 372
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.45 E-value=0.00043 Score=71.91 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=54.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.++.-|+|+|+.++|||||+|+|+....... +.+.. ....+||-+.... + ..+.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~--------~~~~~-~~~T~gi~~~~~~----~-------------~~~~ 58 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD--------VMDTS-QQTTKGIWMWSVP----F-------------KLGK 58 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeE--------ecCCC-CCCccceEEEecc----c-------------cCCC
Confidence 4677899999999999999999966521110 11110 1111233221111 1 0123
Q ss_pred ceEEEEEeCCCCCCc------HHHHHHHhhc--cCcEEEEEcCCC
Q 003305 97 EYLINLIDSPGHVDF------SSEVTAALRI--TDGALVVVDCIE 133 (832)
Q Consensus 97 ~~~i~liDTPGh~df------~~~~~~~l~~--~D~ailVvda~~ 133 (832)
+..+.++||||..+- ......++.. +|..|+.++...
T Consensus 59 ~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 59 EHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 578999999997653 2234455555 899898888764
No 373
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.42 E-value=0.00023 Score=79.38 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=61.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
+++.++|.+|+|||||+|+|+.......+ ..++. ...|.|...... .. +..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~----~~~~s------~~pgtT~~~~~~--~~-----------------~~~ 205 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD----VITTS------PFPGTTLDLIEI--PL-----------------DDG 205 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc----eeeec------CCCCeEeeEEEE--Ee-----------------CCC
Confidence 69999999999999999999876432111 00111 123556543322 22 224
Q ss_pred EEEEeCCCCCCcHHHHHHHh-----------hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAAL-----------RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l-----------~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+.++||||..... ++...+ .......+.+|....+......-+......+..+.++++|-+..
T Consensus 206 ~~l~DtPG~~~~~-~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 206 HSLYDTPGIINSH-QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred CEEEECCCCCChh-HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 6799999986432 111111 23455667776654332222111112222344566788887765
No 374
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.41 E-value=0.00026 Score=74.57 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+.++++|++|+|||||+|+|+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 478999999999999999997653
No 375
>PRK12288 GTPase RsgA; Reviewed
Probab=97.39 E-value=0.0002 Score=79.13 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhc
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.++++|.+|+|||||+|+|+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 47999999999999999997654
No 376
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.37 E-value=0.00042 Score=67.63 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHH
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
....+++++|.+++|||||+++|..
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3457889999999999999999964
No 377
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.36 E-value=0.00019 Score=71.65 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=70.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCCc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
-++++|+|...+|||.|+-.+ .++... .++.| |+.-. .+.+... +++.
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~--t~~~fp---------~~yvP-------TVFdnys~~v~V~-------------dg~~ 52 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISY--TTNAFP---------EEYVP-------TVFDNYSANVTVD-------------DGKP 52 (198)
T ss_pred eeEEEEECCCCcCceEEEEEe--ccCcCc---------ccccC-------eEEccceEEEEec-------------CCCE
Confidence 357899999999999998544 222111 11111 22110 0111110 2457
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH--HHHHHHHHc--CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLRQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt--~~~~~~~~~--~~~p~ilviNKiD~~ 163 (832)
..+.||||.|.+||-.-..-+...+|.+++..+.....+... ..-+..+.. -++|+|+|.+|.|+.
T Consensus 53 v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 53 VELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred EEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 789999999999997744457789999988888765433332 111122222 468999999999976
No 378
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.00045 Score=78.88 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=37.7
Q ss_pred ceEEEEEeCCCCCCcHHHH------HHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEV------TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~------~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++.+.||||||........ ..+.. ....+||+++..+..... .+++..... .+.-+++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 5789999999975432221 11222 245688899886533332 233332222 3556899999965
No 379
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0024 Score=73.59 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=79.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc------------cCCceE--eecCcccccccCcee------------
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------------VAGDVR--MTDTRADEAERGITI------------ 70 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~------------~~g~~~--~~d~~~~E~~rgiTi------------ 70 (832)
...-+|+|.|..++||||++|+||...-..... ..|..- .++- ..|...-.|+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~-s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEG-SEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCC-CcccccHHHHhHHHHhcCcccc
Confidence 345689999999999999999999875332220 011111 1111 0011100011
Q ss_pred --eeeeEEEEeeccchhhccccCcCCCCceEEEEEeCCCCC---CcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHH
Q 003305 71 --KSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHV---DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ 145 (832)
Q Consensus 71 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~---df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~ 145 (832)
..+.+.+.|+.. .++.- ...+.+||.||.. .+...+..-.-.+|..|+|+.|..-.+-.....+..
T Consensus 186 ~~~~sLlrV~~p~~-------~csLL--rnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~ 256 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDD-------KCSLL--RNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHK 256 (749)
T ss_pred cCcceEEEEEecCc-------cchhh--hccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHH
Confidence 122233333311 11111 1268899999964 466677777789999999999876555444555566
Q ss_pred HHcCCCCeE-EEEECCCcc
Q 003305 146 ALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 146 ~~~~~~p~i-lviNKiD~~ 163 (832)
+... .|-| ++.||+|..
T Consensus 257 vs~~-KpniFIlnnkwDas 274 (749)
T KOG0448|consen 257 VSEE-KPNIFILNNKWDAS 274 (749)
T ss_pred hhcc-CCcEEEEechhhhh
Confidence 5555 6655 678899976
No 380
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.32 E-value=0.00034 Score=76.62 Aligned_cols=57 Identities=28% Similarity=0.317 Sum_probs=40.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..++.++|-+|+|||||+|+|+....+.....+ |+|.....+.+ +.
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P---------------G~Tk~~q~i~~-------------------~~ 177 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP---------------GTTKGIQWIKL-------------------DD 177 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC---------------ceecceEEEEc-------------------CC
Confidence 356999999999999999999877664444333 45554443332 34
Q ss_pred EEEEEeCCCCC
Q 003305 99 LINLIDSPGHV 109 (832)
Q Consensus 99 ~i~liDTPGh~ 109 (832)
.+.|+||||..
T Consensus 178 ~i~LlDtPGii 188 (322)
T COG1161 178 GIYLLDTPGII 188 (322)
T ss_pred CeEEecCCCcC
Confidence 58999999964
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=97.32 E-value=0.00026 Score=78.20 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.++|+|++|+|||||+|+|+....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999976543
No 382
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.30 E-value=0.0029 Score=62.94 Aligned_cols=63 Identities=22% Similarity=0.144 Sum_probs=48.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~ 163 (832)
.+.+|||||..+. ....++..+|.+|+|+++...-...+...++.+...+.+ ..+++|++|..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 6899999986553 567789999999999999876666666666666665655 45799999865
No 383
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.29 E-value=0.00042 Score=74.88 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
..+++++|.+|+|||||+|+|....
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~ 145 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKK 145 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999997643
No 384
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.29 E-value=0.00059 Score=73.34 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..+++++|.+|+|||||+|+|...
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999654
No 385
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.27 E-value=0.00063 Score=71.63 Aligned_cols=114 Identities=24% Similarity=0.221 Sum_probs=71.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
...|+++|-.|+|||||+++|. .+....+... ..++|. |... ... ..+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT-~Aal~p~drL--FATLDp---------T~h~----a~L---------------psg~ 226 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALT-KAALYPNDRL--FATLDP---------TLHS----AHL---------------PSGN 226 (410)
T ss_pred CceEEEEeecCccHHHHHHHHH-hhhcCccchh--heeccc---------hhhh----ccC---------------CCCc
Confidence 4579999999999999999996 3222222100 012221 1111 111 1366
Q ss_pred EEEEEeCCCCCC-cH-------HHHHHHhhccCcEEEEEcCCCcc-chhHHHHHHHHHcCCCCe-------EEEEECCCc
Q 003305 99 LINLIDSPGHVD-FS-------SEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIRP-------VLTVNKMDR 162 (832)
Q Consensus 99 ~i~liDTPGh~d-f~-------~~~~~~l~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~~p~-------ilviNKiD~ 162 (832)
.+.+.||-|+.. +- ..+..-...+|.++-|+|.++.. ..|...++.-....++|. |=|=||+|.
T Consensus 227 ~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~ 306 (410)
T KOG0410|consen 227 FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDY 306 (410)
T ss_pred EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence 788999999752 21 22334456789999999999864 456667777777777752 226677776
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 307 e 307 (410)
T KOG0410|consen 307 E 307 (410)
T ss_pred c
Confidence 5
No 386
>PRK14974 cell division protein FtsY; Provisional
Probab=97.27 E-value=0.00091 Score=73.34 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=39.1
Q ss_pred ceEEEEEeCCCCCC----cHHHHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcC--CC-CeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGE--RI-RPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~d----f~~~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~--~~-p~ilviNKiD~~ 163 (832)
++.+.||||||... ++.++..-.+ ..|..+||+|+..|- ..++++... .+ .--+++||+|..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 45699999999764 3444433322 468899999998753 222333322 12 345789999965
No 387
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0014 Score=68.83 Aligned_cols=163 Identities=20% Similarity=0.196 Sum_probs=82.8
Q ss_pred HHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhc---Cc------cccc--cCCceEeecCcccc---cccCceeee
Q 003305 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA---GI------IAQE--VAGDVRMTDTRADE---AERGITIKS 72 (832)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~---g~------i~~~--~~g~~~~~d~~~~E---~~rgiTi~~ 72 (832)
+-+..++...-+-..|+|-|.+|+|||||++.|...- |. ++.. ..|....-|..... ...|.-+.+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee
Confidence 3445555666666789999999999999999996542 21 1110 01111001110000 001111111
Q ss_pred eeEEEEeeccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH--HHHHHHHcCC
Q 003305 73 TGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGER 150 (832)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~--~~~~~~~~~~ 150 (832)
....-....-....+..-.-++.-++.+.||.|-|-..---+ -...+|..++|.=..-|-..|.. -+++.+
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---- 191 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA---- 191 (323)
T ss_pred cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh----
Confidence 110000000000000000012223678899999996543222 34578999988877777666654 233443
Q ss_pred CCeEEEEECCCcccccccCCHHHHHHHHHHHHHH
Q 003305 151 IRPVLTVNKMDRCFLELQVDGEEAYQTFSRVVEN 184 (832)
Q Consensus 151 ~p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 184 (832)
=|+||||.|+. ++ +.+...++..+..
T Consensus 192 --Di~vINKaD~~----~A--~~a~r~l~~al~~ 217 (323)
T COG1703 192 --DIIVINKADRK----GA--EKAARELRSALDL 217 (323)
T ss_pred --heeeEeccChh----hH--HHHHHHHHHHHHh
Confidence 38999999977 54 3444445554443
No 388
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.25 E-value=0.00038 Score=75.16 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+.++++|++|+|||||+|+|+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 689999999999999999997653
No 389
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.00068 Score=74.47 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.+.++++|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999654
No 390
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.21 E-value=0.00059 Score=67.77 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=21.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
..+++++|.+|+|||||+++|....
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~ 139 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKK 139 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999996543
No 391
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00095 Score=72.50 Aligned_cols=98 Identities=23% Similarity=0.289 Sum_probs=61.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccc-hhhcc-ccCcCCCCc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKS-YKGERNGNE 97 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 97 (832)
.+++|+|-+|+|||||.++|......+.+ ..+ .||+............ +.+.+ ..|+.....
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aN--------YPF--------~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~ 66 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIAN--------YPF--------CTIEPNVGVVYVPDCRLDELAEIVKCPPKIRP 66 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccC--------CCc--------ccccCCeeEEecCchHHHHHHHhcCCCCcEEe
Confidence 47899999999999999999655422211 111 1333332222222100 01111 122333345
Q ss_pred eEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCC
Q 003305 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 98 ~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~ 133 (832)
..+.|+|.+|.+. +-.....-+|.+|+++.||||.+
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 6799999999753 55677889999999999999984
No 392
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.16 E-value=0.0038 Score=59.73 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=52.2
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcC--CCCeEEEEECCCcccccccCCHHHHH
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRCFLELQVDGEEAY 175 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~~p~ilviNKiD~~~~~~~~~~~~~~ 175 (832)
+.+.++|||+..+ .....++..+|.+++|++....-...+...++.+... ..+..+++|+++.. .+.++..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-----~~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-----KEGKKVF 117 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-----HHHHHHH
Confidence 6789999998654 4456889999999999998764444445555544322 34566899999854 2234444
Q ss_pred HHHHHHHH
Q 003305 176 QTFSRVVE 183 (832)
Q Consensus 176 ~~~~~~~~ 183 (832)
+.+.+.++
T Consensus 118 ~~~~~~~~ 125 (139)
T cd02038 118 KRLSNVSN 125 (139)
T ss_pred HHHHHHHH
Confidence 44554444
No 393
>PRK13796 GTPase YqeH; Provisional
Probab=97.14 E-value=0.00072 Score=75.53 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=26.5
Q ss_pred HHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+.+.+.+.....-+++.++|.+|+|||||+|+|+...
T Consensus 148 ~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 148 DELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhc
Confidence 3344433322234689999999999999999998653
No 394
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.12 E-value=0.00086 Score=75.90 Aligned_cols=63 Identities=27% Similarity=0.438 Sum_probs=37.6
Q ss_pred CceEEEEEeCCCCCCc----HHHHHH--HhhccCcEEEEEcCCCccchhHHHHHHHHHc--CCCCe-EEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDF----SSEVTA--ALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRP-VLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df----~~~~~~--~l~~~D~ailVvda~~g~~~qt~~~~~~~~~--~~~p~-ilviNKiD~~ 163 (832)
+++.+.||||||.... ..++.. .....|.++||+|+..| + ...+++.. ..+++ =+++||+|-.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q--~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---Q--DAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 4577999999996533 222221 12347889999999754 2 22222222 23443 3679999943
No 395
>PRK10867 signal recognition particle protein; Provisional
Probab=97.10 E-value=0.0023 Score=72.54 Aligned_cols=63 Identities=27% Similarity=0.402 Sum_probs=37.7
Q ss_pred CceEEEEEeCCCCCC----cHHHHHHHh--hccCcEEEEEcCCCccchhHHHHHHHHHc--CCCCe-EEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVD----FSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALG--ERIRP-VLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~d----f~~~~~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~--~~~p~-ilviNKiD~~ 163 (832)
.++.+.||||||... ...++.... ...|.+++|+|+..| | ...+++.. ..+++ -+++||+|-.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 457899999999653 333332222 246788999998754 2 22233322 23443 3788999943
No 396
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.10 E-value=0.0017 Score=71.63 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=60.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC-ccccccCCceEeecCcccccccCceeeeeeEEEEeecc-chhhccccCcCCCCc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMT-DDALKSYKGERNGNE 97 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 97 (832)
.+++|+|.+++|||||.++|..... .+.. + .+ .|+......+.+... -..+.......+.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~-------y-pf--------tTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAAN-------P-PF--------TTIEPNAGVVNPSDPRLDLLAIYIKPEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCC-------C-CC--------CCCCCceeEEEechhHHHHHHHHhCCcCcCC
Confidence 5789999999999999999954432 1111 0 00 122222222222210 011222222333335
Q ss_pred eEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCC
Q 003305 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 98 ~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~ 133 (832)
..+.++|.||... +.......++.+|+.+.|||+.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 5789999999754 55578889999999999999964
No 397
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.10 E-value=0.00053 Score=72.81 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
+..+++|++|+|||||+|+|+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc
Confidence 3678999999999999999965
No 398
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.09 E-value=0.0016 Score=61.32 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=77.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|....|||||+-....... | ..-++..|+-.--..++.. +-...
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~-------------d-e~~~q~~GvN~mdkt~~i~----------------~t~Is 70 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEY-------------D-EEYTQTLGVNFMDKTVSIR----------------GTDIS 70 (205)
T ss_pred EEEEeecccccCceeeehhhhcchh-------------H-HHHHHHhCccceeeEEEec----------------ceEEE
Confidence 5899999999999999976632211 0 0111222322211112211 12557
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHcCCC--CeEEEEECCCccc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGERI--RPVLTVNKMDRCF 164 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~~~~--p~ilviNKiD~~~ 164 (832)
+.+||.-|..+|....--+-..+-+++++.|-+...+.....-| +||++.+. -+|++.+|.|..+
T Consensus 71 fSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi 138 (205)
T KOG1673|consen 71 FSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFI 138 (205)
T ss_pred EEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhh
Confidence 88999999999998887787888889999999876555554444 78887765 3678999999873
No 399
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.08 E-value=0.0016 Score=69.53 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
....-|.|+|.+|||||||+++|+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999875
No 400
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.05 E-value=0.0055 Score=52.83 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=47.1
Q ss_pred CeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEE
Q 003305 375 PLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (832)
Q Consensus 375 p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i 454 (832)
||.+.|..++... |. +..+||.+|+++.||.+++...+ . ..+|.+|.. ...++++|.|||.+++
T Consensus 1 plr~~I~~v~~~~--g~-vv~G~v~~G~i~~G~~v~i~P~~-----~----~~~V~si~~----~~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKDM--GT-VVLGKVESGTIKKGDKLLVMPNK-----T----QVEVLSIYN----EDVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEcC--CE-EEEEEEeeeEEecCCEEEEeCCC-----c----EEEEEEEEE----CCEECCEECCCCEEEE
Confidence 3455555554332 54 88999999999999999986422 1 257888764 2478999999999988
Q ss_pred e
Q 003305 455 V 455 (832)
Q Consensus 455 ~ 455 (832)
.
T Consensus 65 ~ 65 (82)
T cd04089 65 R 65 (82)
T ss_pred E
Confidence 4
No 401
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.01 E-value=0.001 Score=63.80 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=44.0
Q ss_pred HHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcC--CCCeEEEEECCCcc
Q 003305 112 SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 112 ~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~~p~ilviNKiD~~ 163 (832)
..++.+++..+|++++|+|+.++...+...+.+.+... ++|+++++||+|+.
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 35788999999999999999998877776776666555 88999999999975
No 402
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.96 E-value=0.0038 Score=68.09 Aligned_cols=157 Identities=20% Similarity=0.151 Sum_probs=83.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCc----cccccCCceEee--cCcccccccCceeeeeeEEEEeeccc-hhhccccCc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGI----IAQEVAGDVRMT--DTRADEAERGITIKSTGISLYYEMTD-DALKSYKGE 92 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~----i~~~~~g~~~~~--d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~ 92 (832)
+...|-|--|||||||+++|+....- +-....|+.-.- +.....-+.=..+...++-+...... ..+..+..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~- 80 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR- 80 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh-
Confidence 44568888999999999999987641 111123321111 11111111122333334433322111 01111222
Q ss_pred CCCCceEEEEEeCCCCCCcHH--------HHHHHhhccCcEEEEEcCCCccchhH---HHHHHHHHcCCCCeEEEEECCC
Q 003305 93 RNGNEYLINLIDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQT---ETVLRQALGERIRPVLTVNKMD 161 (832)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~--------~~~~~l~~~D~ailVvda~~g~~~qt---~~~~~~~~~~~~p~ilviNKiD 161 (832)
..+ .....+|-|-|..+=.. ......-..|++|-||||........ ....+|+.. -=+|++||.|
T Consensus 81 ~~~-~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivlNK~D 156 (323)
T COG0523 81 RRD-RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVLNKTD 156 (323)
T ss_pred ccC-CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEEeccc
Confidence 122 26678999999876322 22233345699999999998655433 222333322 2378999999
Q ss_pred cccccccCCHHHHHHHHHHHHHHhhhh
Q 003305 162 RCFLELQVDGEEAYQTFSRVVENANVI 188 (832)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (832)
+. .. ++ .+.++..+.++|..
T Consensus 157 lv----~~--~~-l~~l~~~l~~lnp~ 176 (323)
T COG0523 157 LV----DA--EE-LEALEARLRKLNPR 176 (323)
T ss_pred CC----CH--HH-HHHHHHHHHHhCCC
Confidence 87 43 33 55667777666544
No 403
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0014 Score=73.71 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-..|+++|+.|+||||++..|...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988654
No 404
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.92 E-value=0.0035 Score=62.04 Aligned_cols=66 Identities=18% Similarity=0.052 Sum_probs=50.8
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
.++.+.++|||+... ......+ ..+|.+++|+....--...+...++.+.+.+.+++ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 468899999999753 3334343 68999999998887666677777888888888876 689999864
No 405
>PRK00098 GTPase RsgA; Reviewed
Probab=96.83 E-value=0.0016 Score=70.82 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.++++|++|+|||||+|+|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999754
No 406
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.78 E-value=0.012 Score=53.44 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=43.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCC----CeEEEEEC
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI----RPVLTVNK 159 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~----p~ilviNK 159 (832)
.+.++|||+..+ .....++..+|.+++|++....-...+...++.+.+.+. +..+++|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 678999999765 345678899999999999887655556666655555443 45578885
No 407
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.78 E-value=0.0015 Score=66.30 Aligned_cols=84 Identities=25% Similarity=0.311 Sum_probs=57.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
--+|+++|-+.+|||||+..+........ . ..+ .|...-..-+.|+ +-
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA----~-yeF-----------TTLtcIpGvi~y~----------------ga 109 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAA----S-YEF-----------TTLTCIPGVIHYN----------------GA 109 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhh----c-eee-----------eEEEeecceEEec----------------Cc
Confidence 35799999999999999998844322211 1 111 1222222233343 77
Q ss_pred EEEEEeCCCCCCc-------HHHHHHHhhccCcEEEEEcCCCc
Q 003305 99 LINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEG 134 (832)
Q Consensus 99 ~i~liDTPGh~df-------~~~~~~~l~~~D~ailVvda~~g 134 (832)
.|.++|.||...= -.+++...+-||.++.|+||+.+
T Consensus 110 ~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 110 NIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred eEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 9999999998642 23577788899999999999874
No 408
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0018 Score=72.31 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=37.7
Q ss_pred CceEEEEEeCCCCCCc----HHHHHHHhhc-----cCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDF----SSEVTAALRI-----TDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df----~~~~~~~l~~-----~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~ 163 (832)
.++.+.||||||+... ..++..-++. ..-.+||+||+.+.... ..+.+.- ..++ -=++++|+|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f--~~~~~~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAY--ESLNYRRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHh--cCCCCCEEEEEcccCC
Confidence 4678899999998632 2233333332 22578999998764332 2222222 2233 34789999964
No 409
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.78 E-value=0.0027 Score=64.49 Aligned_cols=66 Identities=26% Similarity=0.259 Sum_probs=47.1
Q ss_pred CCceEEEEEeC-CCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCC-CeEEEEECCCcc
Q 003305 95 GNEYLINLIDS-PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDT-PGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~-p~ilviNKiD~~ 163 (832)
.+.+.+.++|| .|.+-|..- ..+.+|.+|+|+|.+..--...+++-+.+.+.++ ++.+++||+|..
T Consensus 131 ~~~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 131 LNRYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 34567888888 455556533 3457899999999986544455667777888884 556899999943
No 410
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.76 E-value=0.0053 Score=64.04 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=44.8
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHH------HcCCCCeEEEEECCC
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA------LGERIRPVLTVNKMD 161 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~------~~~~~p~ilviNKiD 161 (832)
+.+.+.||||||+.+ ..+..++..+|.+|+.+.++.---..+...+... ...++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468899999999875 5577889999999999877643322232332221 134677779999987
No 411
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.70 E-value=0.0017 Score=64.91 Aligned_cols=82 Identities=17% Similarity=0.129 Sum_probs=44.8
Q ss_pred ceEEEEEeCCCCCCcHHH-----HHHHhhccCcEEEEEcCCCccchh-HH-HHHHHHHcCCCCeEEEEECCCcccccccC
Q 003305 97 EYLINLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIEGVCVQ-TE-TVLRQALGERIRPVLTVNKMDRCFLELQV 169 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~-----~~~~l~~~D~ailVvda~~g~~~q-t~-~~~~~~~~~~~p~ilviNKiD~~~~~~~~ 169 (832)
.....||-|.|..+-..- .....-..+.+|.|||+..-.... .. .+..| ...-=++++||+|+. .
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Q---i~~ADvIvlnK~D~~----~- 155 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQ---IAFADVIVLNKIDLV----S- 155 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHH---HCT-SEEEEE-GGGH----H-
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhc---chhcCEEEEeccccC----C-
Confidence 356788999997664433 122234568899999996532111 11 12222 233458999999977 2
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 003305 170 DGEEAYQTFSRVVENANV 187 (832)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~ 187 (832)
.++..+++++.+.++|.
T Consensus 156 -~~~~i~~~~~~ir~lnp 172 (178)
T PF02492_consen 156 -DEQKIERVREMIRELNP 172 (178)
T ss_dssp -HH--HHHHHHHHHHH-T
T ss_pred -hhhHHHHHHHHHHHHCC
Confidence 22233566666666654
No 412
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=96.69 E-value=0.014 Score=50.87 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=43.4
Q ss_pred CCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 387 SDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 387 ~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
+..|. +..+||.+|++++||.++++..+ .+ +....+|..|.. ...++++|.|||.+++.
T Consensus 12 ~g~Gt-Vv~G~v~~G~v~~g~~v~~~P~~--~g---~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~ 70 (87)
T cd03694 12 PGVGT-VVGGTVSKGVIRLGDTLLLGPDQ--DG---SFRPVTVKSIHR----NRSPVRVVRAGQSASLA 70 (87)
T ss_pred CCcce-EEEEEEecCEEeCCCEEEECCCC--CC---CEeEEEEEEEEE----CCeECCEECCCCEEEEE
Confidence 45566 88999999999999999975321 01 112367888764 36778999999999884
No 413
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.68 E-value=0.0019 Score=63.06 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=39.4
Q ss_pred HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc--CCCCeEEEEECCCcc
Q 003305 115 VTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 115 ~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~--~~~p~ilviNKiD~~ 163 (832)
+.+++..+|.+++|+|+.+........+.+.+.. .++|+++++||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 5678999999999999998766666666665543 348999999999986
No 414
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.68 E-value=0.0038 Score=68.39 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=52.7
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-----------chhHHHHHHHHHc----CCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-----------~~qt~~~~~~~~~----~~~p~ilviNKiD 161 (832)
+..+.++|++|.......+......++++++|||.++-- .......++.+.. .++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 678999999999999999999999999999999998631 1222333443332 4689999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 76
No 415
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.68 E-value=0.0047 Score=65.69 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=37.6
Q ss_pred ceEEEEEeCCCCCCc----HHHHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCC-CC-eEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df----~~~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~-~p-~ilviNKiD~~ 163 (832)
++.+.||||||.... ..++...++ ..|-.+||+||+-+-.. ...++..++ ++ -=++++|+|-.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d----~~~~~~~f~~~~~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD----MIEIITNFKDIHIDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH----HHHHHHHhCCCCCCEEEEEeecCC
Confidence 578899999998743 334443333 34667999998753221 122222222 22 34789999965
No 416
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.68 E-value=0.0049 Score=70.08 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=38.3
Q ss_pred ceEEEEEeCCCCCCcH----HHHHHHhh---ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFS----SEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~----~~~~~~l~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++.+.||||||+..+. .++...+. .-+-+.||++++.+.. ....+++.....+. --++++|+|-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCC-CEEEEeccccc
Confidence 5788999999986543 23333333 2235689999875432 22333333332222 24789999964
No 417
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.68 E-value=0.0022 Score=63.62 Aligned_cols=140 Identities=19% Similarity=0.165 Sum_probs=72.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee--------eEEEEeeccchh-------
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST--------GISLYYEMTDDA------- 85 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~--------~~~~~~~~~~~~------- 85 (832)
-+-++|+.||||||.+..+....-.+.+. -+...+|-..+--+.-.|++.. .--+.+..++..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs--~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl 82 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRS--VHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYL 82 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCce--eEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHH
Confidence 35689999999999999998776554442 1111222222111111121110 000111100000
Q ss_pred ---hccccCcCCCCceEEEEEeCCCCCC------cHHHHHHHhhcc---CcEEEEEcCCCccchhHH------HHHHHHH
Q 003305 86 ---LKSYKGERNGNEYLINLIDSPGHVD------FSSEVTAALRIT---DGALVVVDCIEGVCVQTE------TVLRQAL 147 (832)
Q Consensus 86 ---~~~~~~~~~~~~~~i~liDTPGh~d------f~~~~~~~l~~~---D~ailVvda~~g~~~qt~------~~~~~~~ 147 (832)
+.-.......-+-.+.++||||+.+ -.....+.+..- =++++++|+.--+ ..++ ..+....
T Consensus 83 ~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~v-D~~KfiSG~lsAlsAMi 161 (273)
T KOG1534|consen 83 LENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLV-DSTKFISGCLSALSAMI 161 (273)
T ss_pred HHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhh-hHHHHHHHHHHHHHHHH
Confidence 0000111222234567899999654 455666777653 3577777765321 1111 2223334
Q ss_pred cCCCCeEEEEECCCcc
Q 003305 148 GERIRPVLTVNKMDRC 163 (832)
Q Consensus 148 ~~~~p~ilviNKiD~~ 163 (832)
...+|.|=++.|||+.
T Consensus 162 ~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 162 SLEVPHINVLSKMDLL 177 (273)
T ss_pred HhcCcchhhhhHHHHh
Confidence 5678999999999988
No 418
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.66 E-value=0.0058 Score=65.10 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=66.5
Q ss_pred HhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccc-hhhcc
Q 003305 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKS 88 (832)
Q Consensus 10 ~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~ 88 (832)
+-+|.+..+...++|+|.+|+||||+.++|....-. ++..-+ .||+.....+...... ..++.
T Consensus 11 ~~~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~-----~~NfPF-----------~TIdPn~a~V~v~d~Rfd~l~~ 74 (391)
T KOG1491|consen 11 KVLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAG-----AANFPF-----------CTIDPNEARVEVPDSRFDLLCP 74 (391)
T ss_pred cccccCCCCcceeeEeeCCCCchHHHHHHHhcCCCC-----ccCCCc-----------ceeccccceeecCchHHHHHHH
Confidence 335666666679999999999999999999543211 111111 1333333222221100 11223
Q ss_pred ccCcCCCCceEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCC
Q 003305 89 YKGERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~ 133 (832)
++.......-.+++.|..|... +-....+-+|.+|+++-||+|.+
T Consensus 75 ~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 75 IYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred hcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 3333333456899999999753 45567788999999999999875
No 419
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0051 Score=68.80 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=40.1
Q ss_pred CceEEEEEeCCCCCCc----HHHHHHHhhcc--C-cEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDF----SSEVTAALRIT--D-GALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df----~~~~~~~l~~~--D-~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.+.||||||..-. ..++...+..+ + -.+||+||+.+..... .+++.....+ +-=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 3678999999997532 23444444433 3 4789999998743332 3333322222 234789999954
No 420
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0019 Score=77.24 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-+.|+++|+.|+||||++..|...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 357899999999999999999753
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.64 E-value=0.011 Score=53.12 Aligned_cols=80 Identities=26% Similarity=0.225 Sum_probs=52.0
Q ss_pred EEEEe-CCCCCHHHHHHHHHHhcCccccccCC-ceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 22 MSVIA-HVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 22 i~iiG-~~~~GKTTL~~~Ll~~~g~i~~~~~g-~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
|++.| ..|+||||++-.|...... .| ++...|..+ .+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~-----------------------------------~~d 41 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDP-----------------------------------QYD 41 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCC-----------------------------------CCC
Confidence 56666 5789999999988654321 12 122333222 146
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL 143 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~ 143 (832)
+.+||||+..+ .....++..+|.+++++++...-.......+
T Consensus 42 ~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~ 83 (104)
T cd02042 42 YIIIDTPPSLG--LLTRNALAAADLVLIPVQPSPLDLDGLEKLL 83 (104)
T ss_pred EEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCHHHHHHHHHHH
Confidence 78999999765 3455889999999999998754333334443
No 422
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.56 E-value=0.0065 Score=67.21 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=53.2
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-----------cchhHHHHHHHHHc----CCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----------VCVQTETVLRQALG----ERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-----------~~~qt~~~~~~~~~----~~~p~ilviNKiD 161 (832)
+..+.++|..|+..+...+...+..++++|+|||.++- ....+...++.+.. .++|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 67889999999999999999999999999999999962 12233344444443 4679999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 263 ~~ 264 (342)
T smart00275 263 LF 264 (342)
T ss_pred hH
Confidence 76
No 423
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.51 E-value=0.0036 Score=60.96 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=40.1
Q ss_pred HHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 114 EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 114 ~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.....++.+|++++|+|+.++...+...+.+.+...+.|+++++||+|+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 34556677999999999998777666666666666789999999999975
No 424
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.50 E-value=0.0065 Score=67.19 Aligned_cols=140 Identities=17% Similarity=0.183 Sum_probs=70.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecC-cc--cccccCceeeeeeEEEEeeccchhh---ccccCc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDT-RA--DEAERGITIKSTGISLYYEMTDDAL---KSYKGE 92 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~-~~--~E~~rgiTi~~~~~~~~~~~~~~~~---~~~~~~ 92 (832)
.-.|-++|--||||||.+..|-.+-.. .....+ ....|. +| .||-+...-....-.|......+++ +.--..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvl-lVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVL-LVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH-cCCceE-EEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 456899999999999999999654322 110011 011111 11 1222211111111111111011111 111111
Q ss_pred CCCCceEEEEEeCCCCCC----cHHHHH--HHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 93 RNGNEYLINLIDSPGHVD----FSSEVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 93 ~~~~~~~i~liDTPGh~d----f~~~~~--~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
.....+.+.||||.|... ++.|+. ...-..|=+++|+||.-|- ...-...+....+++- ++++|+|-.
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---dA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---DAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---HHHHHHHHHhhhcCCceEEEEcccCC
Confidence 223457899999999654 444433 2334568899999998763 3222223334556655 789999943
No 425
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.46 E-value=0.0087 Score=68.57 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-+.++++|+.|+||||++..|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 357899999999999999999753
No 426
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=96.45 E-value=0.016 Score=50.63 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=42.6
Q ss_pred CCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 387 SDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 387 ~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
+..|. +..+||.+|+++.||.+++++.+. +. ..+|..|.. +..++++|.|||-+++.
T Consensus 12 ~g~G~-vv~G~v~~G~v~~gd~v~~~p~~~--~~-----~~~V~si~~----~~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 12 PGRGT-VVTGRIERGTIKVGDEVEIVGFGE--TL-----KTTVTGIEM----FRKTLDEAEAGDNVGVL 68 (87)
T ss_pred CCcEE-EEEEEECCCCCccCCEEEEeCCCC--Cc-----eEEEEEEEE----CCcCCCEECCCCEEEEE
Confidence 44565 789999999999999999865311 11 257777763 35678999999999885
No 427
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.44 E-value=0.0061 Score=64.41 Aligned_cols=78 Identities=23% Similarity=0.237 Sum_probs=49.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...||-|+|-+|+|||||+|++........+. ...-.+-|+|+..+......+ .
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~----------a~vG~~pGVT~~V~~~iri~~----------------r 195 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKA----------ARVGAEPGVTRRVSERIRISH----------------R 195 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccc----------eeccCCCCceeeehhheEecc----------------C
Confidence 45699999999999999999996544332211 111234578887766333332 4
Q ss_pred eEEEEEeCCCCC-CcHHHHHHHhhc
Q 003305 98 YLINLIDSPGHV-DFSSEVTAALRI 121 (832)
Q Consensus 98 ~~i~liDTPGh~-df~~~~~~~l~~ 121 (832)
-.+.++||||.. .-+...+.+++.
T Consensus 196 p~vy~iDTPGil~P~I~~~e~~lKL 220 (335)
T KOG2485|consen 196 PPVYLIDTPGILVPSIVDVEDGLKL 220 (335)
T ss_pred CceEEecCCCcCCCCCCCHHHhhhh
Confidence 569999999952 333334444443
No 428
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.44 E-value=0.003 Score=69.59 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=67.0
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCcccc-ccCCceEeecCccc---cccc------CceeeeeeEEEEeeccchhhc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTRAD---EAER------GITIKSTGISLYYEMTDDALK 87 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~d~~~~---E~~r------giTi~~~~~~~~~~~~~~~~~ 87 (832)
+.|.|+++|+.|+||||.+-.|-........ ...| ...+|+... ||-+ |+++......-.+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~------- 273 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVA-IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELA------- 273 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceE-EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHH-------
Confidence 3789999999999999999999655431111 1122 123443321 2211 22222111000000
Q ss_pred cccCcCCCCceEEEEEeCCCCCCc----HHHHHHHhhcc--CcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCC
Q 003305 88 SYKGERNGNEYLINLIDSPGHVDF----SSEVTAALRIT--DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 161 (832)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df----~~~~~~~l~~~--D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD 161 (832)
..-..-.++.+.||||.|+.-. +.++...+..+ .-.-||++++..-. .-.+++.+....++. =++++|+|
T Consensus 274 --~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~-dlkei~~~f~~~~i~-~~I~TKlD 349 (407)
T COG1419 274 --EAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYE-DLKEIIKQFSLFPID-GLIFTKLD 349 (407)
T ss_pred --HHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchH-HHHHHHHHhccCCcc-eeEEEccc
Confidence 0001113568999999998643 33444444443 34568888864211 112333332222222 26789999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
-.
T Consensus 350 ET 351 (407)
T COG1419 350 ET 351 (407)
T ss_pred cc
Confidence 65
No 429
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.42 E-value=0.024 Score=57.52 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=95.1
Q ss_pred CCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeee
Q 003305 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (832)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 758 (832)
+..+.+|.+.|+-.- .-...+.+=++.|=..|.++|+..|..+-..|...+++.++-+.+|++...|.+..+.|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T TIGR00257 89 GSDLGDIGAVVVRYF---GGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKS 165 (204)
T ss_pred HCCCCcEEEEEEEec---CCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEee
Confidence 667888888776432 23345566577899999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeee
Q 003305 759 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (832)
Q Consensus 759 ~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (832)
+..+ ...++..+|..+.-.+...|..+|+|+..+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 166 NFSN---NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7654 5889999999999999999999999987653
No 430
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.40 E-value=0.011 Score=65.24 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.3
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
++.-..+.|-.|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3455678999999999999999975
No 431
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.31 E-value=0.0039 Score=66.97 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=45.0
Q ss_pred CCCC-CcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 106 PGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 106 PGh~-df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
|||. ....++...+..+|.+++|+||..+.......+.+.+ .+.|+++|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 8886 4677889999999999999999887666555555544 368999999999975
No 432
>PRK11568 hypothetical protein; Provisional
Probab=96.29 E-value=0.031 Score=56.65 Aligned_cols=112 Identities=17% Similarity=0.182 Sum_probs=95.0
Q ss_pred CCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeee
Q 003305 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (832)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 758 (832)
+..+.+|.+.++-.- .-...+.+=++.|=..|.++|+.+|..+-..|...+.|+++-+.+|.+...|.+..+.|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T PRK11568 89 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVNS 165 (204)
T ss_pred HCCCccEEEEEEEEc---CCcccccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEcc
Confidence 677888888876432 23345556577899999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeee
Q 003305 759 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (832)
Q Consensus 759 ~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (832)
+..+ ...++..+|..+.-.|...|..+|+|+..+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 166 EYQA---FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred eecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7654 5788999999999999999999999987654
No 433
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.27 E-value=0.017 Score=63.30 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=76.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcC----ccccccCCceEeecCcccccc--cCceeeeeeEEEEeecc-chhhcccc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG----IIAQEVAGDVRMTDTRADEAE--RGITIKSTGISLYYEMT-DDALKSYK 90 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g----~i~~~~~g~~~~~d~~~~E~~--rgiTi~~~~~~~~~~~~-~~~~~~~~ 90 (832)
++.-..|.|--|||||||+++|+.... ++-....|+.. .|..-.+.. .-.++...++.+..... ...+..+.
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~-iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~ 81 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS-VDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCcc-ccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHH
Confidence 456678999999999999999997532 11111244321 121111100 01222223332221100 00111111
Q ss_pred CcCC--CCceEEEEEeCCCCCCcHHHHHHHh---------hccCcEEEEEcCCCccchhH--HHHHHHHHcCCCCeEEEE
Q 003305 91 GERN--GNEYLINLIDSPGHVDFSSEVTAAL---------RITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVLTV 157 (832)
Q Consensus 91 ~~~~--~~~~~i~liDTPGh~df~~~~~~~l---------~~~D~ailVvda~~g~~~qt--~~~~~~~~~~~~p~ilvi 157 (832)
.... .......+|-|-|..+-.. +...+ -..|++|.|||+........ .....|+. .-=+|++
T Consensus 82 ~~~~~~~~~~d~IvIEttG~a~p~~-i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~AD~Ivl 157 (318)
T PRK11537 82 DNLDKGNIQFDRLVIECTGMADPGP-IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YADRILL 157 (318)
T ss_pred HHHhccCCCCCEEEEECCCccCHHH-HHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hCCEEEE
Confidence 1100 1134567899999987432 22222 13589999999986532211 11112222 2347899
Q ss_pred ECCCcccccccCCHHHHHHHHHHHHHHhhh
Q 003305 158 NKMDRCFLELQVDGEEAYQTFSRVVENANV 187 (832)
Q Consensus 158 NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (832)
||+|+. ... +.+++.+..+|.
T Consensus 158 nK~Dl~----~~~-----~~~~~~l~~lnp 178 (318)
T PRK11537 158 TKTDVA----GEA-----EKLRERLARINA 178 (318)
T ss_pred eccccC----CHH-----HHHHHHHHHhCC
Confidence 999987 421 345555555553
No 434
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.25 E-value=0.0091 Score=76.63 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=28.8
Q ss_pred hccCcEEEEEcCCCccch--hH-HH---H-------HHHHHcCCCCeEEEEECCCcc
Q 003305 120 RITDGALVVVDCIEGVCV--QT-ET---V-------LRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 120 ~~~D~ailVvda~~g~~~--qt-~~---~-------~~~~~~~~~p~ilviNKiD~~ 163 (832)
+-.||+|++||+.+=... +. .. . +......++|+-|+++|||+.
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 347999999999863321 11 01 1 122335578999999999986
No 435
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.22 E-value=0.0043 Score=61.59 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=43.8
Q ss_pred CCCC-CcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 106 PGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 106 PGh~-df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
|||. ....++..++..+|.+++|+|+.++.......++... .+.|+++++||+|+.
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 7774 4667889999999999999999987665555554433 357999999999975
No 436
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.21 E-value=0.023 Score=51.12 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=57.0
Q ss_pred CCCeEEEEEEeeecC--------CCCcceeeeeeeeeeeeCCCEEEEcCCCCC--CCCcc-ccceeeeceEEEEecCcee
Q 003305 373 NGPLMLYVSKMIPAS--------DKGRFFAFGRVFSGKVSTGLKVRIMGPNYV--PGEKK-DLYVKSVQRTVIWMGKKQE 441 (832)
Q Consensus 373 ~~p~va~VfK~~~~~--------~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~--~~~~~-~~~~~kv~~l~~~~g~~~~ 441 (832)
+.|+.++|...+.-+ -+|. ++=++|.+|.|+.||+|-+...-.. .++.. .....+|..|+. ...
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~Gg-VigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~----~~~ 77 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGG-VAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKA----ENN 77 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceee-EEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEe----cCc
Confidence 456667777776543 3455 8999999999999999976411000 00000 112345555552 456
Q ss_pred eeCcccCCCEEEE-eccccccccceee
Q 003305 442 TVEDVPCGNTVAM-VGLDQFITKNATL 467 (832)
Q Consensus 442 ~v~~a~aGdI~~i-~gl~~~~~~tgTl 467 (832)
.+++|.||+.++| ++|+..+++...|
T Consensus 78 ~l~~a~pGgliGvgT~Ldpsltk~D~l 104 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLDPTLTKADRL 104 (113)
T ss_pred cccEEeCCCeEEEccccCcccccccee
Confidence 7999999999998 5777776665443
No 437
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=96.16 E-value=0.029 Score=48.46 Aligned_cols=55 Identities=29% Similarity=0.447 Sum_probs=42.2
Q ss_pred CCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 387 SDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 387 ~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
+..|. +..+||.+|++++|+++.++..+ . ..+|.+|.. ...++++|.|||-+++.
T Consensus 12 ~~~g~-vv~G~v~sG~i~~g~~v~~~p~~-----~----~~~V~sI~~----~~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 12 KGQGT-VVTGTVLSGSVKVGDKVEILPLG-----E----ETRVRSIQV----HGKDVEEAKAGDRVALN 66 (83)
T ss_pred CCcEE-EEEEEEeecEEeCCCEEEECCCC-----c----eEEEEEEEE----CCcCcCEEcCCCEEEEE
Confidence 44555 88999999999999999976421 1 257888764 35678999999999884
No 438
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.11 E-value=0.0045 Score=66.78 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=28.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD 53 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~ 53 (832)
.....|++||-+|+||||++|.|-.+.-.-....+|+
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE 341 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE 341 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc
Confidence 4456999999999999999999966554444444564
No 439
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.09 E-value=0.02 Score=64.59 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=26.8
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCcc
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i 46 (832)
+..+++|+|+|+.++|||||+++|....|..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3568999999999999999999998876554
No 440
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.03 E-value=0.039 Score=47.43 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=39.7
Q ss_pred eeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 393 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 393 l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
...+||.+|+++.||+|+++..+ . ..+|..|.. +..+++.|.|||.+++.
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~-----~----~~~V~si~~----~~~~~~~a~aGd~v~l~ 66 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG-----K----TSRVKSIET----FDGELDEAGAGESVTLT 66 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC-----C----eEEEEEEEE----CCcEeCEEcCCCEEEEE
Confidence 68999999999999999986422 1 257888864 34678999999999884
No 441
>PRK13695 putative NTPase; Provisional
Probab=96.03 E-value=0.016 Score=57.65 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=29.0
Q ss_pred EEEEEc---CCCccchhHHHHHHHHHcCCCCeEEEEECC
Q 003305 125 ALVVVD---CIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (832)
Q Consensus 125 ailVvd---a~~g~~~qt~~~~~~~~~~~~p~ilviNKi 160 (832)
=++++| ..+....+....+..+...+.|+++++||.
T Consensus 98 ~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 98 DVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 347899 667777777888888888899999999984
No 442
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.76 E-value=0.0082 Score=67.25 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
..+|+++|-+|+||||++|+|.+..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~K 338 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRK 338 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCc
Confidence 5799999999999999999995543
No 443
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.74 E-value=0.099 Score=54.88 Aligned_cols=64 Identities=30% Similarity=0.282 Sum_probs=41.0
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc--CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~--~~~p~ilviNKiD~~ 163 (832)
+.+.+||||+. +...+..++..+|.+++++....--..... .+.+.... ...+.-+++|+.|..
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 36899999995 345677889999999999987532111122 12222221 233456899999854
No 444
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=95.72 E-value=0.099 Score=58.76 Aligned_cols=145 Identities=17% Similarity=0.285 Sum_probs=85.3
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc---------------eE---eec------Ccc-----------
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD---------------VR---MTD------TRA----------- 61 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~---------------~~---~~d------~~~----------- 61 (832)
....+|+++|...+|||+.++.+... .+..+. .|+ .. +.| -.+
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqA-RIFPRG-SGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQA-RIFPRG-SGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHh-ccCcCC-CcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 45678999999999999999977433 222211 121 00 111 111
Q ss_pred -----cccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEEEEeCCCCCC-------------cHHHHHHHhhccC
Q 003305 62 -----DEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVD-------------FSSEVTAALRITD 123 (832)
Q Consensus 62 -----~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~d-------------f~~~~~~~l~~~D 123 (832)
...+.|.|+..-.+++.... .+--++.++|.||... ........+....
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKG-------------PgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPN 450 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKG-------------PGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPN 450 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecC-------------CCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCC
Confidence 12235777777777776642 2235789999999642 1222334556677
Q ss_pred cEEEEEcCCCccchhH----HHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHHHHHHHHH
Q 003305 124 GALVVVDCIEGVCVQT----ETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVVE 183 (832)
Q Consensus 124 ~ailVvda~~g~~~qt----~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~ 183 (832)
++||+|- +|-.... -.+..++.-.|...|+|++|.|+.--+ -++|+. ++++++
T Consensus 451 AIILCIQ--DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn-lA~PdR----I~kIle 507 (980)
T KOG0447|consen 451 AIILCIQ--DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN-VASPSR----IQQIIE 507 (980)
T ss_pred eEEEEec--cCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhc-cCCHHH----HHHHHh
Confidence 7777762 2221111 234466777888999999999986211 235544 555555
No 445
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.61 E-value=0.0091 Score=64.53 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=44.7
Q ss_pred CCCCC-CcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 105 SPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 105 TPGh~-df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
=|||. .-..++...+..+|.+++|+|+..+.......+.... . +.|+++++||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-~-~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKII-G-NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh-C-CCCEEEEEEchhcC
Confidence 38886 3566788899999999999999987766655554433 2 78999999999975
No 446
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.59 E-value=0.077 Score=45.93 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=46.5
Q ss_pred EEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 378 LYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 378 a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
..+|+. ...|. ++.+||-+|+|++|+.+.++..+ +..+.-+|..|.. ...++++|.+|+-|.|.
T Consensus 6 ~~vf~~---~~~g~-vag~kV~~G~l~~g~~v~vlr~~------~~~~~g~i~sl~~----~~~~v~~a~~G~ecgi~ 69 (84)
T cd03692 6 RAVFKI---SKVGN-IAGCYVTDGKIKRNAKVRVLRNG------EVIYEGKISSLKR----FKDDVKEVKKGYECGIT 69 (84)
T ss_pred EEEEEC---CCCcE-EEEEEEEECEEeCCCEEEEEcCC------CEEEEEEEEEEEE----cCcccCEECCCCEEEEE
Confidence 345543 33455 89999999999999999987532 1123357777774 36779999999999885
No 447
>PRK01889 GTPase RsgA; Reviewed
Probab=95.33 E-value=0.014 Score=64.92 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
-..++++|.+|+|||||++.|+....
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc
Confidence 35789999999999999999986543
No 448
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.33 E-value=0.016 Score=58.49 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=41.4
Q ss_pred CCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 106 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 106 PGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
|.+..|...+..+++.+|++++|+|+.+........++. ...+.|+++++||+|+.
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLL 74 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcC
Confidence 334446788888999999999999998754433333322 24568999999999986
No 449
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.32 E-value=0.27 Score=54.54 Aligned_cols=139 Identities=21% Similarity=0.202 Sum_probs=79.4
Q ss_pred HHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc-CCceEeecCcccccccCceeeee--------eEEEEe
Q 003305 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV-AGDVRMTDTRADEAERGITIKST--------GISLYY 79 (832)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~-~g~~~~~d~~~~E~~rgiTi~~~--------~~~~~~ 79 (832)
.+++..+...-.-|+++|++-+||||++.++....-...-.+ ..+.+..|..|+... |-||-+. .+.+..
T Consensus 7 ykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~a-GktImTTEPKFiP~eAv~I~l 85 (492)
T PF09547_consen 7 YKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGA-GKTIMTTEPKFIPNEAVEITL 85 (492)
T ss_pred HHHHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCC-CCceeccCCcccCCcceEEEe
Confidence 455555555556899999999999999999976543211000 001123333333221 2222111 111111
Q ss_pred eccchhhccccCcCCCCceEEEEEeCCCCC-------------------------CcHHHHHHHhhc------cCcEEEE
Q 003305 80 EMTDDALKSYKGERNGNEYLINLIDSPGHV-------------------------DFSSEVTAALRI------TDGALVV 128 (832)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~-------------------------df~~~~~~~l~~------~D~ailV 128 (832)
.++-..++-+|||-|+. -|...+.-+.+. .=|+|+.
T Consensus 86 -------------~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVT 152 (492)
T PF09547_consen 86 -------------DDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVT 152 (492)
T ss_pred -------------cCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEe
Confidence 12346789999999952 144445545442 2245566
Q ss_pred EcCCCcc------chhHHHHHHHHHcCCCCeEEEEECCC
Q 003305 129 VDCIEGV------CVQTETVLRQALGERIRPVLTVNKMD 161 (832)
Q Consensus 129 vda~~g~------~~qt~~~~~~~~~~~~p~ilviNKiD 161 (832)
-|++-+- ....+++.+.+...++|.++++|-.+
T Consensus 153 TDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~ 191 (492)
T PF09547_consen 153 TDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTK 191 (492)
T ss_pred cCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 6666432 22345667788889999999999777
No 450
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.30 E-value=0.035 Score=55.16 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCccchhHHHHHHH--HHcCCCCeEEEEECCCcc
Q 003305 123 DGALVVVDCIEGVCVQTETVLRQ--ALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 123 D~ailVvda~~g~~~qt~~~~~~--~~~~~~p~ilviNKiD~~ 163 (832)
|.+++|+|+..........+.+. ....+.|+|+++||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999877776666666 334578999999999986
No 451
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.30 E-value=0.084 Score=56.38 Aligned_cols=65 Identities=28% Similarity=0.325 Sum_probs=41.1
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH---HHH-HcCCCCeE-EEEECCCc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL---RQA-LGERIRPV-LTVNKMDR 162 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~---~~~-~~~~~p~i-lviNKiD~ 162 (832)
.|.+.||||||..... .+..++..||.+|+++.+..---......+ +.. ...+++.. +++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5789999999865422 344568999999999987643222222332 222 23355544 68999884
No 452
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.28 E-value=0.12 Score=44.96 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=50.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEEE
Q 003305 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (832)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (832)
+++.|..|+||||++..|...... .|. .+ +.. + .+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~---------------~v------~~~-----------------~-d~i 37 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGK---------------RV------LLI-----------------D-DYV 37 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCC---------------eE------EEE-----------------C-CEE
Confidence 578888999999999999654321 121 11 001 1 467
Q ss_pred EEeCCCCCCcHHH-HHHHhhccCcEEEEEcCCCccchhHHH
Q 003305 102 LIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTET 141 (832)
Q Consensus 102 liDTPGh~df~~~-~~~~l~~~D~ailVvda~~g~~~qt~~ 141 (832)
++|+||-.+.... ....+..+|.++++++...........
T Consensus 38 ivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~ 78 (99)
T cd01983 38 LIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARR 78 (99)
T ss_pred EEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHH
Confidence 8999997764422 256778899999999987654444333
No 453
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.13 E-value=0.023 Score=57.59 Aligned_cols=67 Identities=24% Similarity=0.238 Sum_probs=40.5
Q ss_pred ceEEEEEeCCCCCCc------HHHHHHHhhccCcEEEEEcCCCcc---chhH-HH----HHHHHHcCCCCeEEEEECCCc
Q 003305 97 EYLINLIDSPGHVDF------SSEVTAALRITDGALVVVDCIEGV---CVQT-ET----VLRQALGERIRPVLTVNKMDR 162 (832)
Q Consensus 97 ~~~i~liDTPGh~df------~~~~~~~l~~~D~ailVvda~~g~---~~qt-~~----~~~~~~~~~~p~ilviNKiD~ 162 (832)
..++.++||||++++ ...+.+-++..|.=+.+|.-.+.. .+.. .. .+.-......|.|=++.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 457789999997764 345666776667655554443321 1111 11 112233556799889999997
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 176 ~ 176 (290)
T KOG1533|consen 176 L 176 (290)
T ss_pred H
Confidence 6
No 454
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.042 Score=59.62 Aligned_cols=137 Identities=14% Similarity=0.129 Sum_probs=69.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc---CccccccCCceE---eecCcccc-cccCceeeeeeEEEEeeccchhhccccC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA---GIIAQEVAGDVR---MTDTRADE-AERGITIKSTGISLYYEMTDDALKSYKG 91 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~---g~i~~~~~g~~~---~~d~~~~E-~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (832)
.--|.++|-.|+||||.+..|.++. |.-.-..++.+. ..|....- .+-++.+..++..... -.....-..
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dp---v~ia~egv~ 177 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADP---VKIASEGVD 177 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccch---HHHHHHHHH
Confidence 3356899999999999999997642 111100111111 12222211 1112222221110000 000011112
Q ss_pred cCCCCceEEEEEeCCCCCC----cHHHHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCC--CC-eEEEEECCCc
Q 003305 92 ERNGNEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER--IR-PVLTVNKMDR 162 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~d----f~~~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~--~p-~ilviNKiD~ 162 (832)
.-+..++.+.|+||.|.+. +..|+..... .-|-+|+|+||+-|-... .++...+ +- --++++|+|-
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae-----~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE-----AQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH-----HHHHHHHHhhccceEEEEeccc
Confidence 2234578899999999654 3444443332 259999999999874322 2333222 22 2368999995
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 253 h 253 (483)
T KOG0780|consen 253 H 253 (483)
T ss_pred C
Confidence 4
No 455
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.068 Score=54.37 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=67.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
.|.++|+--+|||++.....++- .+.++-++ |-...+|...-. +.=..+
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkM------sPneTlfl-----ESTski~~d~is--------------------~sfinf 77 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKM------SPNETLFL-----ESTSKITRDHIS--------------------NSFINF 77 (347)
T ss_pred eEEEEeecccCcchhhheeeecc------CCCceeEe-----eccCcccHhhhh--------------------hhhcce
Confidence 49999999999999886553321 12222121 111112211100 012356
Q ss_pred EEEeCCCCCCcHHH---HHHHhhccCcEEEEEcCCCccc-hhHHHHHHHHHcCCC----CeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSE---VTAALRITDGALVVVDCIEGVC-VQTETVLRQALGERI----RPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~---~~~~l~~~D~ailVvda~~g~~-~qt~~~~~~~~~~~~----p~ilviNKiD~~ 163 (832)
.+||-||+.+|... .+.-.+.+.+.|+||||.+... +-++-+.-.++.+++ ..=+++-|.|-+
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 78999999987653 4566788999999999987644 334444444444433 345799999965
No 456
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.08 E-value=0.025 Score=55.00 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCccchhHHHHH-HHHHcCCCCeEEEEECCCcc
Q 003305 123 DGALVVVDCIEGVCVQTETVL-RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 123 D~ailVvda~~g~~~qt~~~~-~~~~~~~~p~ilviNKiD~~ 163 (832)
|.+++|+|+.++.......+. ..+...++|+|+++||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999987666655554 35566789999999999986
No 457
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.07 E-value=0.021 Score=62.30 Aligned_cols=70 Identities=29% Similarity=0.385 Sum_probs=45.8
Q ss_pred HHHHHhhhccc------CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEe
Q 003305 6 AEGLRRIMDFK------HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYY 79 (832)
Q Consensus 6 ~~~~~~~~~~~------~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~ 79 (832)
++.+.++..+. .+-..|+|+|-+|+||||++|+|......-....+ |+|.....+.+
T Consensus 233 ae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p---------------GvT~smqeV~L-- 295 (435)
T KOG2484|consen 233 AETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP---------------GVTRSMQEVKL-- 295 (435)
T ss_pred HHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCc---------------cchhhhhheec--
Confidence 45555555532 23457999999999999999999776543222112 34544433332
Q ss_pred eccchhhccccCcCCCCceEEEEEeCCCCC
Q 003305 80 EMTDDALKSYKGERNGNEYLINLIDSPGHV 109 (832)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~ 109 (832)
+..|-|+|+||..
T Consensus 296 -----------------dk~i~llDsPgiv 308 (435)
T KOG2484|consen 296 -----------------DKKIRLLDSPGIV 308 (435)
T ss_pred -----------------cCCceeccCCcee
Confidence 5688999999953
No 458
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.04 E-value=0.16 Score=52.29 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=41.7
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc---chhHHHHHHH---HHcCCCCeEEEEECCC
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV---CVQTETVLRQ---ALGERIRPVLTVNKMD 161 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~---~~qt~~~~~~---~~~~~~p~ilviNKiD 161 (832)
..+.+.||||+|-..-. +..++..+|.+|+-.-.+.-- ..+|...++. .....+|.-|+.|++.
T Consensus 82 ~~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred cCCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 35788999999976533 556777899988766554321 2233333322 2245679999999997
No 459
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=95.01 E-value=0.14 Score=53.88 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=48.1
Q ss_pred eEEEEEeCCCCCCcHH--------HHHHHhhccCcEEEEEcCCCccc--------hhHHHHHHHHHcCCCCeEEEEECCC
Q 003305 98 YLINLIDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVC--------VQTETVLRQALGERIRPVLTVNKMD 161 (832)
Q Consensus 98 ~~i~liDTPGh~df~~--------~~~~~l~~~D~ailVvda~~g~~--------~qt~~~~~~~~~~~~p~ilviNKiD 161 (832)
....++.|-|..+=-. +-...---.||+|-||||.+... ..-.+..+|+. .-=-+++||.|
T Consensus 146 fD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA---~AD~II~NKtD 222 (391)
T KOG2743|consen 146 FDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA---LADRIIMNKTD 222 (391)
T ss_pred cceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh---hhheeeecccc
Confidence 4567899999876211 11122234699999999976321 01111112211 11246789999
Q ss_pred cccccccCCHHHHHHHHHHHHHHhhhhhh
Q 003305 162 RCFLELQVDGEEAYQTFSRVVENANVIMA 190 (832)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (832)
+. . ++..+.+++.+..+|.+..
T Consensus 223 li----~---~e~~~~l~q~I~~INslA~ 244 (391)
T KOG2743|consen 223 LV----S---EEEVKKLRQRIRSINSLAQ 244 (391)
T ss_pred cc----C---HHHHHHHHHHHHHhhhHHH
Confidence 88 3 3556677777777777654
No 460
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=94.99 E-value=0.002 Score=62.58 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=77.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccc-cCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+-|+|..++|||+++.+.+..+-...-+ .+| +....--+.|+ +..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIg-----------------vdfalkVl~wd-------------d~t 73 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIG-----------------VDFALKVLQWD-------------DKT 73 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHhccC-------------hHH
Confidence 34578899999999999999887654211110 011 11111123343 111
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc------C--CCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------E--RIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~------~--~~p~ilviNKiD~~ 163 (832)
-.+..|||..|+..|...+.-..+.+.++.+|+|.+......--.-|.+-.. . -+|+++..||+|..
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 3467899999999998888888899999999999998766555445544332 2 23577899999987
No 461
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.88 E-value=0.18 Score=51.91 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=38.5
Q ss_pred CceEEEEEeCCCCCCcHHHHHHH--hhccCcEEEEEcCCCccchhHHHHHHHHHcC----CCCeE-EEEECCCc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGE----RIRPV-LTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~--l~~~D~ailVvda~~g~~~qt~~~~~~~~~~----~~p~i-lviNKiD~ 162 (832)
..|.+.||||||......- ... ++.||.+++|++...--......+++.+... +.+.. +++||+|.
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 4689999999986632111 112 3489999999987542111223333333322 34433 79999984
No 462
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.85 E-value=0.036 Score=59.64 Aligned_cols=135 Identities=20% Similarity=0.180 Sum_probs=69.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCcccc---ccCCceEe---ecCcc-cccccCceeeeeeEEEEeeccchhhccc-
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRM---TDTRA-DEAERGITIKSTGISLYYEMTDDALKSY- 89 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~---~~~g~~~~---~d~~~-~E~~rgiTi~~~~~~~~~~~~~~~~~~~- 89 (832)
+.--|.++|-.|+||||.+..|-+.-..-.. -.+|.+.. .+... .-.+-|..+-. -... .++...-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~----~~~G-~DpAaVafD 212 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS----GKEG-ADPAAVAFD 212 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc----cCCC-CCcHHHHHH
Confidence 3556799999999999999999654211000 01121100 00000 01112222211 1111 11110000
Q ss_pred -cCcCCCCceEEEEEeCCCC----CCcHHHHHHHhhcc---Cc-----EEEEEcCCCccchhHHHHHHHHHcCC--CCeE
Q 003305 90 -KGERNGNEYLINLIDSPGH----VDFSSEVTAALRIT---DG-----ALVVVDCIEGVCVQTETVLRQALGER--IRPV 154 (832)
Q Consensus 90 -~~~~~~~~~~i~liDTPGh----~df~~~~~~~l~~~---D~-----ailVvda~~g~~~qt~~~~~~~~~~~--~p~i 154 (832)
-.....+++.+.||||.|. .+++.|+..-.|++ +. .++|+||+-|-.. +.|+..++ +++-
T Consensus 213 Ai~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna-----l~QAk~F~eav~l~ 287 (340)
T COG0552 213 AIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA-----LSQAKIFNEAVGLD 287 (340)
T ss_pred HHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH-----HHHHHHHHHhcCCc
Confidence 1122335788999999994 35777766655544 43 7788899987432 23443322 3333
Q ss_pred -EEEECCCc
Q 003305 155 -LTVNKMDR 162 (832)
Q Consensus 155 -lviNKiD~ 162 (832)
++++|+|-
T Consensus 288 GiIlTKlDg 296 (340)
T COG0552 288 GIILTKLDG 296 (340)
T ss_pred eEEEEeccc
Confidence 68999993
No 463
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=94.74 E-value=0.16 Score=44.99 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=50.5
Q ss_pred EEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEecc
Q 003305 378 LYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 457 (832)
Q Consensus 378 a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl 457 (832)
++|.-...++..|. ++-+=|.+|+|+.||.+.. |..+ -||..|+-..| .++++|.||+.+-|.|+
T Consensus 3 g~VlE~~~~~g~G~-vatviV~~GtL~~Gd~iv~-G~~~----------gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~ 67 (95)
T cd03702 3 GVVIESKLDKGRGP-VATVLVQNGTLKVGDVLVA-GTTY----------GKVRAMFDENG---KRVKEAGPSTPVEILGL 67 (95)
T ss_pred EEEEEEEecCCCCc-cEEEEEEcCeEeCCCEEEE-cccc----------cEEEEEECCCC---CCCCEECCCCcEEEcCC
Confidence 34444445666677 8899999999999999974 3221 36766665554 67999999999999998
Q ss_pred ccc
Q 003305 458 DQF 460 (832)
Q Consensus 458 ~~~ 460 (832)
++.
T Consensus 68 ~~~ 70 (95)
T cd03702 68 KGV 70 (95)
T ss_pred CCC
Confidence 764
No 464
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.73 E-value=0.073 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.|+|+|..|||||||+.+|+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
No 465
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.50 E-value=0.096 Score=41.36 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=26.2
Q ss_pred HHHHHhh-ccCcEEEEEcCCC--ccchhHH-HHHHHHHc-C-CCCeEEEEECCC
Q 003305 114 EVTAALR-ITDGALVVVDCIE--GVCVQTE-TVLRQALG-E-RIRPVLTVNKMD 161 (832)
Q Consensus 114 ~~~~~l~-~~D~ailVvda~~--g~~~qt~-~~~~~~~~-~-~~p~ilviNKiD 161 (832)
....|++ ..+++++++|.++ |...... .+++.++. . +.|.++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4566675 4577889999987 4333332 23333333 3 789999999998
No 466
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=94.27 E-value=0.097 Score=58.47 Aligned_cols=53 Identities=19% Similarity=0.034 Sum_probs=38.4
Q ss_pred CCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 109 VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 109 ~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+|...+....+.+|++++|+|+.+-.......+.+.+ .+.|+++|+||+|+.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl 103 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLL 103 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhC
Confidence 46776666666788999999999875544434443332 267899999999986
No 467
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=94.27 E-value=0.13 Score=52.52 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=50.4
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
+.+.+.|||||.... ..+....++.+|++|+|+++...-........+++...+.+++ +|+||.|..
T Consensus 126 ~~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 126 KYFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred hcCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 357899999997322 2233345567999999999987666667777778888888866 699999965
No 468
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.15 E-value=0.84 Score=44.20 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=32.0
Q ss_pred HHHHHHhhccCcEEEEEcCCCccch---hHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 113 SEVTAALRITDGALVVVDCIEGVCV---QTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 113 ~~~~~~l~~~D~ailVvda~~g~~~---qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
....+|+..||. ++||=.-.... .....++.+...+.|+|..+-+-++.
T Consensus 92 ~al~rA~~~aDv--IIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~ 143 (179)
T COG1618 92 PALRRALEEADV--IIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH 143 (179)
T ss_pred HHHHHHhhcCCE--EEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC
Confidence 345566677774 55675544333 33556677788899988888876654
No 469
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.14 E-value=0.27 Score=52.39 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=25.6
Q ss_pred CceEEEEEeCCCCCCcHHH-HHHHhhccCcEEEEEcCCC
Q 003305 96 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIE 133 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~-~~~~l~~~D~ailVvda~~ 133 (832)
..+.+.||||||....... ...++..+|.+|+++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 3688999999987532111 1123447999999998764
No 470
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=0.11 Score=65.22 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=40.9
Q ss_pred eEEEEEeCCCC------CCcHHH-----------HHHHhhccCcEEEEEcCCCccc--hhHH-HH----------HHHHH
Q 003305 98 YLINLIDSPGH------VDFSSE-----------VTAALRITDGALVVVDCIEGVC--VQTE-TV----------LRQAL 147 (832)
Q Consensus 98 ~~i~liDTPGh------~df~~~-----------~~~~l~~~D~ailVvda~~g~~--~qt~-~~----------~~~~~ 147 (832)
..-.+|||.|- .+.... -.+..+-.||+|+.+|..+=.+ ++.+ .+ ++...
T Consensus 174 deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL 253 (1188)
T COG3523 174 DEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL 253 (1188)
T ss_pred cceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678999993 112221 1233456799999999986322 2222 11 12333
Q ss_pred cCCCCeEEEEECCCcc
Q 003305 148 GERIRPVLTVNKMDRC 163 (832)
Q Consensus 148 ~~~~p~ilviNKiD~~ 163 (832)
....|+.|++||+|+.
T Consensus 254 ~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 254 HARLPVYLVLTKADLL 269 (1188)
T ss_pred ccCCceEEEEeccccc
Confidence 5678999999999986
No 471
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=94.03 E-value=0.22 Score=53.95 Aligned_cols=64 Identities=23% Similarity=0.268 Sum_probs=39.3
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH---HHHHc-CCCCeE-EEEECCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL---RQALG-ERIRPV-LTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~---~~~~~-~~~p~i-lviNKiD 161 (832)
+|.+.||||||.... ..+..++..||.+|+++++..--......++ +.+.. .+++.. +++|+.|
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 588999999987322 2234567889999999987642222222333 22221 234444 7889987
No 472
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=0.54 Score=50.48 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=27.9
Q ss_pred HHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHH
Q 003305 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLV 40 (832)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll 40 (832)
+.+++++....+.-.|+++|..|+|||||++-|.
T Consensus 176 d~a~~ll~~~tdf~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 176 DNARKLLHKTTDFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred hHHHHHhhcCCCeeEEEeecCCCccHHHHHHHHh
Confidence 4456666666777789999999999999999883
No 473
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.85 E-value=0.063 Score=43.40 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHh
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...|.|+.|+|||||++++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999653
No 474
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.79 E-value=0.53 Score=50.47 Aligned_cols=36 Identities=14% Similarity=0.506 Sum_probs=27.8
Q ss_pred HHHhhhcc--cCCeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 8 GLRRIMDF--KHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 8 ~~~~~~~~--~~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.+.+++.. ..+++|+.|+|.+|.|||++++++....
T Consensus 48 ~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 48 RLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 34444443 3567899999999999999999996643
No 475
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=93.78 E-value=0.33 Score=51.83 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=39.3
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHH----cCCCCeE-EEEECCCc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~----~~~~p~i-lviNKiD~ 162 (832)
+.|.+.||||||..... .+..++..||.+++++...-.-......+++.+. ..+++.. +++|+.|.
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 36899999999864311 1224688999999998664322222223322222 2345543 68899874
No 476
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.68 E-value=0.31 Score=48.32 Aligned_cols=138 Identities=20% Similarity=0.237 Sum_probs=75.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeec---CcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTD---TRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d---~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
.|.|+|.++|||||+.+.|....+. ...+.. ...+|-+..+.. .....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-------~~~~iat~~~~~~e~~~ri~~---------------------h~~~R~ 54 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-------QVLYIATAQPFDDEMAARIAH---------------------HRQRRP 54 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-------CcEeCcCCCCChHHHHHHHHH---------------------HHhcCC
Confidence 5899999999999999999776431 001111 111111111100 011123
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccch-----h---H-----HHHHHHHHcCCCCeEEEEECCCccc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-----Q---T-----ETVLRQALGERIRPVLTVNKMDRCF 164 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~-----q---t-----~~~~~~~~~~~~p~ilviNKiD~~~ 164 (832)
..+..+.+|.+ ..+..... ...+-+++||+..+... + . ....+.....+.++|++-|=...-
T Consensus 55 ~~w~t~E~~~~---l~~~i~~~-~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg~g- 129 (170)
T PRK05800 55 AHWQTVEEPLD---LAELLRAD-AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVGMG- 129 (170)
T ss_pred CCCeEeccccc---HHHHHHhh-cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCccc-
Confidence 35666777764 22222221 12244788888764411 1 1 122333445667788887766554
Q ss_pred ccccCCHHHHHHHHHHHHHHhhhhhhhccC
Q 003305 165 LELQVDGEEAYQTFSRVVENANVIMATYED 194 (832)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (832)
....+..-+.+++.+..+|+.+....+
T Consensus 130 ---~vp~~~~~r~~~d~lG~lnq~la~~ad 156 (170)
T PRK05800 130 ---IVPEYRLGRHFRDIAGRLNQQLAAAAD 156 (170)
T ss_pred ---ccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 334456678899999999998875443
No 477
>PRK08118 topology modulation protein; Reviewed
Probab=93.21 E-value=0.078 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
++|.|+|++|||||||+..|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999965543
No 478
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.14 E-value=0.11 Score=53.80 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=18.0
Q ss_pred eEEEEeCCCCCHHHHHHHH
Q 003305 21 NMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~L 39 (832)
-|+|+||+|+|||||++.+
T Consensus 31 fvsilGpSGcGKSTLLrii 49 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 479
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.09 E-value=0.033 Score=59.99 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..+.|+++|+.|+||||++..|...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999654
No 480
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=93.01 E-value=0.51 Score=41.85 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=49.3
Q ss_pred EEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEecc
Q 003305 378 LYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 457 (832)
Q Consensus 378 a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl 457 (832)
++|.-...++..|. ++-+=|++|+|+.||.+.. |..+ -||..++- ..-..+.+|.+|+.+-+.|+
T Consensus 3 g~ViE~~~~~g~G~-vatviV~~GtL~~Gd~iv~-G~~~----------GkVr~~~d---~~g~~v~~a~Ps~~v~i~g~ 67 (95)
T cd03701 3 GTVIESKLDKGRGP-VATVIVQNGTLKKGDVIVA-GGTY----------GKIRTMVD---ENGKALLEAGPSTPVEILGL 67 (95)
T ss_pred EEEEEEEecCCCCe-eEEEEEEcCeEecCCEEEE-CCcc----------ceEEEEEC---CCCCCccccCCCCCEEEeee
Confidence 34444445666677 8899999999999999974 2111 35555554 44556899999999999998
Q ss_pred ccc
Q 003305 458 DQF 460 (832)
Q Consensus 458 ~~~ 460 (832)
++.
T Consensus 68 ~~~ 70 (95)
T cd03701 68 KDV 70 (95)
T ss_pred cCC
Confidence 775
No 481
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.96 E-value=0.39 Score=51.47 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=36.8
Q ss_pred CceEEEEEeCCCCCCcH-HHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHH---cCCCCeE-EEEECCC
Q 003305 96 NEYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPV-LTVNKMD 161 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~-~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~---~~~~p~i-lviNKiD 161 (832)
+++.+.||||||..-.. .....++..||.+++|+....---.....+++.+. ..+.++. +++|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 35789999999864211 11122345899999999764321111122333332 3345554 7889764
No 482
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.84 E-value=0.31 Score=47.73 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.++|+|..|+|||||+++|+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999764
No 483
>PRK12289 GTPase RsgA; Reviewed
Probab=92.84 E-value=0.16 Score=56.40 Aligned_cols=47 Identities=26% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHhhccCcEEEEEcCCCcc-ch-hHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 117 AALRITDGALVVVDCIEGV-CV-QTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 117 ~~l~~~D~ailVvda~~g~-~~-qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+++.+|.+++|+|+.+.. .. .....+..+...++|+++|+||+|+.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 3578999999999998643 33 22444556667899999999999986
No 484
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.78 E-value=0.11 Score=47.85 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhc
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.|+|.|.+||||||+++.|....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999996653
No 485
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=92.67 E-value=1 Score=47.96 Aligned_cols=66 Identities=11% Similarity=-0.023 Sum_probs=36.7
Q ss_pred CceEEEEEeCCCCCCcHHHH-HHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCC
Q 003305 96 NEYLINLIDSPGHVDFSSEV-TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 161 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~-~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD 161 (832)
++|.+.||||||+....... ...+..+|.+|+++.+..--......+++.+...+.+.. ++.|..+
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~ 179 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRG 179 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCC
Confidence 35789999999865321110 111268999999987764222233344444444444433 4555544
No 486
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.57 E-value=0.12 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhc
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.|+|+|+.|+|||||++.|+...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997753
No 487
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.56 E-value=0.32 Score=52.31 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=25.8
Q ss_pred ceEEEEEeCCCCCCcHH-HHHHHhhccCcEEEEEcCCC
Q 003305 97 EYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~-~~~~~l~~~D~ailVvda~~ 133 (832)
+|.+.||||||..-... .+..++..||.+|+++.+..
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~ 153 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP 153 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchH
Confidence 58899999998542111 12235567999999998865
No 488
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.49 E-value=0.089 Score=53.22 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.7
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
-.|+|+|++|||||||+++|
T Consensus 29 evv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 489
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.37 E-value=0.12 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGI 45 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~ 45 (832)
.+|.|+|++||||||++..|....+.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 37899999999999999999776443
No 490
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=92.30 E-value=1.1 Score=47.06 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=46.9
Q ss_pred ccCcCCCCceEEEEEeCCC-CCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 89 YKGERNGNEYLINLIDSPG-HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 89 ~~~~~~~~~~~i~liDTPG-h~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+....+..+..+.+||||- ..|-.-.+...++.+||||+|--..+--....++...++.+.++|++=++--|=..
T Consensus 148 flk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f 223 (300)
T KOG3022|consen 148 FLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGF 223 (300)
T ss_pred HHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccc
Confidence 3455666777889999975 44433345566666799998864333112222455578889999988555444443
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.24 E-value=0.15 Score=51.32 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.7
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.-.+++|+|+.|+|||||+++|+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999654
No 492
>PRK01889 GTPase RsgA; Reviewed
Probab=92.21 E-value=0.31 Score=54.38 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=37.8
Q ss_pred hhccCcEEEEEcCCCccch-hHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 119 LRITDGALVVVDCIEGVCV-QTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 119 l~~~D~ailVvda~~g~~~-qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+..+|.+++|+++...... .....+..+...+++++|++||+|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4678999999999877666 44567778888999999999999987
No 493
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=92.15 E-value=0.31 Score=53.36 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=50.1
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-----------chhHHHHHHHHHc----CCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-----------~~qt~~~~~~~~~----~~~p~ilviNKiD 161 (832)
+..+-++|.+|+.-=...+......++++|++++.++=- .-.+..+++.+.. .+.++|+|+||+|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 688999999998877777888999999999999988621 1122333443332 3568999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 274 LF 275 (354)
T KOG0082|consen 274 LF 275 (354)
T ss_pred HH
Confidence 76
No 494
>PRK07261 topology modulation protein; Provisional
Probab=92.08 E-value=0.14 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHh
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+|+|+|.+|+|||||+..|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998544
No 495
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.04 E-value=0.13 Score=42.65 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHh
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.|++.|.+|+||||+.++|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999543
No 496
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=91.96 E-value=0.14 Score=53.96 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=35.2
Q ss_pred HHhhccCcEEEEEcCCCcc-chhH-HHHHHHHHcCCCCeEEEEECCCcc
Q 003305 117 AALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 117 ~~l~~~D~ailVvda~~g~-~~qt-~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..++.+|++++|+|+.+.. .... ...+..+...++|+++++||+|+.
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 4688999999999998644 3332 233345556789999999999986
No 497
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.95 E-value=0.19 Score=52.35 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=26.8
Q ss_pred HHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 8 ~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+..++....+..-|+|.|+.|||||||++.|...
T Consensus 22 ~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 22 RLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444456778999999999999999999544
No 498
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.92 E-value=0.14 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=20.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-..++++|+.|+|||||++.++..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 357899999999999999988643
No 499
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=91.83 E-value=0.17 Score=54.68 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=35.0
Q ss_pred hhccCcEEEEEcCCCcc-chhH-HHHHHHHHcCCCCeEEEEECCCcc
Q 003305 119 LRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 119 l~~~D~ailVvda~~g~-~~qt-~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+..+|.+++|+|+.+.. .... ...+..+...++|+++++||+|+.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~ 122 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLL 122 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCC
Confidence 67899999999998875 4332 334455667889999999999986
No 500
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=91.77 E-value=0.17 Score=52.14 Aligned_cols=110 Identities=22% Similarity=0.302 Sum_probs=66.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
-+++++|-+.+|||||+..|......+. ++. +.|...-.....| +.-+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~va---sye-------------fttl~~vpG~~~y----------------~gaK 107 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVA---AYE-------------FTTLTTVPGVIRY----------------KGAK 107 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccc---ccc-------------ceeEEEecceEec----------------cccc
Confidence 4789999999999999999943222111 111 1111111112223 3678
Q ss_pred EEEEeCCCCCCc-------HHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHHcC-----CCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE-----RIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df-------~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~~~-----~~p~ilviNKiD~~ 163 (832)
+.+.|.||..+= -.+++...|-|..+++|+|+...+.- +.+++ .+... +.|+=+..-|-|+-
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~h--k~~ie~eleg~girlnk~pp~i~~kkKdkg 182 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSH--KKIIEKELEGFGIRLNKQPPNIGTKKKDKG 182 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccH--HHHHHHhhhcceeeccCCCCCccccccccC
Confidence 999999998652 23577788899999999999875432 22222 22222 23666666666665
Done!