Query 003305
Match_columns 832
No_of_seqs 334 out of 2739
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 20:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 2E-152 6E-157 1387.1 81.8 829 1-832 1-831 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 3E-122 1E-126 1107.3 52.6 670 17-809 11-700 (709)
3 2rdo_7 EF-G, elongation factor 100.0 8E-114 3E-118 1029.1 67.6 672 15-823 6-702 (704)
4 2xex_A Elongation factor G; GT 100.0 3E-112 1E-116 1014.4 60.2 663 16-823 7-690 (693)
5 1dar_A EF-G, elongation factor 100.0 3E-112 1E-116 1014.8 52.1 660 15-821 8-689 (691)
6 3j25_A Tetracycline resistance 100.0 3E-114 1E-118 1024.0 17.0 600 18-813 1-620 (638)
7 2dy1_A Elongation factor G; tr 100.0 4E-104 1E-108 942.2 57.6 634 16-824 6-662 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 8.5E-78 2.9E-82 698.3 32.0 449 14-572 26-501 (548)
9 2ywe_A GTP-binding protein LEP 100.0 6.2E-74 2.1E-78 666.8 47.1 490 16-825 3-522 (600)
10 3cb4_D GTP-binding protein LEP 100.0 4.2E-72 1.4E-76 653.1 46.5 486 17-825 2-517 (599)
11 2h5e_A Peptide chain release f 100.0 6.8E-63 2.3E-67 571.0 32.5 444 16-571 10-477 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 2.1E-61 7.2E-66 557.8 29.6 442 16-571 10-476 (528)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 1E-38 3.4E-43 339.0 20.7 195 453-810 2-208 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 9.6E-29 3.3E-33 280.5 28.6 286 16-471 14-327 (439)
15 1d2e_A Elongation factor TU (E 100.0 2.5E-29 8.6E-34 282.3 20.5 283 19-471 3-290 (397)
16 2c78_A Elongation factor TU-A; 100.0 5.8E-29 2E-33 280.3 22.8 297 15-471 7-308 (405)
17 1g7s_A Translation initiation 100.0 1.1E-29 3.6E-34 296.6 16.7 338 18-511 4-373 (594)
18 1jny_A EF-1-alpha, elongation 100.0 1.5E-28 5.2E-33 279.1 19.3 131 17-163 4-157 (435)
19 3mca_A HBS1, elongation factor 100.0 1.1E-28 3.6E-33 289.3 14.8 288 16-471 174-489 (592)
20 3p26_A Elongation factor 1 alp 99.9 1.4E-26 4.7E-31 266.5 26.3 303 9-471 23-362 (483)
21 3avx_A Elongation factor TS, e 99.9 5.2E-27 1.8E-31 283.2 22.2 285 16-471 293-581 (1289)
22 1r5b_A Eukaryotic peptide chai 99.9 6.3E-27 2.2E-31 267.7 21.0 131 17-163 41-194 (467)
23 1zun_B Sulfate adenylate trans 99.9 4.4E-26 1.5E-30 258.9 25.5 145 7-171 10-174 (434)
24 1f60_A Elongation factor EEF1A 99.9 2.2E-26 7.4E-31 262.6 22.8 300 14-471 2-328 (458)
25 2elf_A Protein translation elo 99.9 4.2E-26 1.4E-30 252.6 23.4 103 19-162 21-125 (370)
26 1kk1_A EIF2gamma; initiation o 99.9 1.1E-25 3.8E-30 253.9 25.4 133 17-163 8-150 (410)
27 3izq_1 HBS1P, elongation facto 99.9 2.8E-26 9.6E-31 269.5 20.1 295 15-471 163-496 (611)
28 1s0u_A EIF-2-gamma, translatio 99.9 1.8E-24 6.1E-29 243.8 23.7 133 17-163 6-148 (408)
29 1zo1_I IF2, translation initia 99.9 1.7E-26 5.8E-31 263.1 5.8 114 18-163 3-116 (501)
30 1wb1_A Translation elongation 99.9 7.1E-25 2.4E-29 251.3 13.2 122 17-163 17-138 (482)
31 3sjy_A Translation initiation 99.9 1.8E-23 6.3E-28 235.1 23.5 133 17-163 6-142 (403)
32 3izy_P Translation initiation 99.9 2.3E-25 7.7E-30 255.9 5.8 115 18-163 3-117 (537)
33 1wf3_A GTP-binding protein; GT 99.6 2.2E-15 7.4E-20 162.2 13.8 116 17-163 5-130 (301)
34 2lkc_A Translation initiation 99.6 3.6E-15 1.2E-19 146.8 9.0 115 17-163 6-120 (178)
35 3iev_A GTP-binding protein ERA 99.6 2.4E-14 8.3E-19 154.7 15.1 118 16-163 7-135 (308)
36 2hjg_A GTP-binding protein ENG 99.6 8E-15 2.7E-19 166.3 11.3 115 18-163 174-299 (436)
37 2xtp_A GTPase IMAP family memb 99.5 3.8E-14 1.3E-18 149.3 15.2 116 17-163 20-152 (260)
38 1ega_A Protein (GTP-binding pr 99.5 7.5E-15 2.6E-19 158.2 9.6 114 18-163 7-129 (301)
39 2dyk_A GTP-binding protein; GT 99.5 6.3E-14 2.1E-18 135.3 12.8 114 19-163 1-121 (161)
40 3lxw_A GTPase IMAP family memb 99.5 8.2E-14 2.8E-18 145.7 14.2 124 17-175 19-160 (247)
41 4dhe_A Probable GTP-binding pr 99.5 7.1E-14 2.4E-18 143.2 11.5 117 17-163 27-157 (223)
42 4dcu_A GTP-binding protein ENG 99.5 8.4E-14 2.9E-18 158.9 12.2 115 18-163 194-319 (456)
43 3qq5_A Small GTP-binding prote 99.5 2.6E-14 8.9E-19 160.1 7.7 115 17-163 32-153 (423)
44 4bas_A ADP-ribosylation factor 99.5 2.9E-13 9.8E-18 135.8 12.1 116 15-163 13-140 (199)
45 3t1o_A Gliding protein MGLA; G 99.4 3.2E-13 1.1E-17 135.0 12.4 128 17-163 12-148 (198)
46 1mky_A Probable GTP-binding pr 99.4 2.5E-13 8.7E-18 154.1 12.8 113 20-163 2-123 (439)
47 3iby_A Ferrous iron transport 99.4 2.1E-13 7.2E-18 143.3 11.2 111 19-163 1-123 (256)
48 3tw8_B RAS-related protein RAB 99.4 1.5E-13 5.1E-18 135.3 8.9 120 14-163 4-126 (181)
49 2fh5_B SR-beta, signal recogni 99.4 1E-12 3.5E-17 133.7 15.3 133 15-184 3-146 (214)
50 3def_A T7I23.11 protein; chlor 99.4 5.8E-13 2E-17 140.5 13.8 116 17-163 34-164 (262)
51 1wms_A RAB-9, RAB9, RAS-relate 99.4 7.3E-13 2.5E-17 130.0 13.5 119 15-163 3-129 (177)
52 2bme_A RAB4A, RAS-related prot 99.4 3.5E-13 1.2E-17 133.6 11.0 118 16-163 7-128 (186)
53 1svi_A GTP-binding protein YSX 99.4 4.6E-13 1.6E-17 133.9 11.9 114 17-163 21-147 (195)
54 3tkl_A RAS-related protein RAB 99.4 3.4E-13 1.2E-17 134.8 11.0 122 12-163 9-134 (196)
55 2fn4_A P23, RAS-related protei 99.4 6.6E-13 2.3E-17 130.6 12.8 119 14-163 4-127 (181)
56 1ky3_A GTP-binding protein YPT 99.4 5.2E-13 1.8E-17 131.5 12.0 119 16-163 5-131 (182)
57 3k53_A Ferrous iron transport 99.4 3.4E-13 1.2E-17 143.1 11.4 112 18-163 2-122 (271)
58 1z0f_A RAB14, member RAS oncog 99.4 1.4E-12 4.8E-17 128.0 14.9 117 17-163 13-133 (179)
59 1upt_A ARL1, ADP-ribosylation 99.4 5E-13 1.7E-17 130.3 11.2 111 18-163 6-121 (171)
60 1r8s_A ADP-ribosylation factor 99.4 1.2E-12 4E-17 126.9 13.5 108 21-163 2-114 (164)
61 1fzq_A ADP-ribosylation factor 99.4 1.5E-12 5.2E-17 129.0 14.6 120 9-163 6-130 (181)
62 3kkq_A RAS-related protein M-R 99.4 2E-12 6.8E-17 127.8 15.3 116 16-163 15-136 (183)
63 1u8z_A RAS-related protein RAL 99.4 2.3E-12 7.9E-17 124.7 15.5 115 18-163 3-122 (168)
64 1zd9_A ADP-ribosylation factor 99.4 8.4E-13 2.9E-17 131.6 12.4 112 18-163 21-137 (188)
65 2il1_A RAB12; G-protein, GDP, 99.4 6.9E-13 2.3E-17 132.8 11.7 117 17-163 24-144 (192)
66 2hjg_A GTP-binding protein ENG 99.4 1.9E-13 6.5E-18 155.0 8.4 113 20-163 4-124 (436)
67 1vg8_A RAS-related protein RAB 99.4 4.2E-13 1.4E-17 135.5 10.0 119 15-163 4-130 (207)
68 3pqc_A Probable GTP-binding pr 99.4 9.9E-13 3.4E-17 131.1 12.6 113 17-163 21-146 (195)
69 2hxs_A RAB-26, RAS-related pro 99.4 1.2E-12 4.1E-17 128.6 12.8 118 17-163 4-128 (178)
70 2a9k_A RAS-related protein RAL 99.4 2.9E-12 1E-16 126.6 15.5 118 15-163 14-136 (187)
71 2p5s_A RAS and EF-hand domain 99.4 7.7E-13 2.6E-17 133.1 11.5 117 17-163 26-146 (199)
72 2efe_B Small GTP-binding prote 99.4 7.7E-13 2.6E-17 130.4 11.2 117 17-163 10-130 (181)
73 2h57_A ADP-ribosylation factor 99.4 1.3E-12 4.5E-17 130.3 12.6 113 18-163 20-139 (190)
74 1ksh_A ARF-like protein 2; sma 99.4 6.8E-13 2.3E-17 131.7 10.5 112 17-163 16-132 (186)
75 2y8e_A RAB-protein 6, GH09086P 99.4 7.8E-13 2.7E-17 129.8 10.7 119 15-163 10-132 (179)
76 1r2q_A RAS-related protein RAB 99.4 9.4E-13 3.2E-17 127.9 11.1 116 18-163 5-124 (170)
77 1ek0_A Protein (GTP-binding pr 99.4 1.4E-12 4.6E-17 126.8 12.1 115 19-163 3-121 (170)
78 2g6b_A RAS-related protein RAB 99.4 1.1E-12 3.8E-17 129.1 11.5 118 17-163 8-129 (180)
79 1zj6_A ADP-ribosylation factor 99.4 8.8E-13 3E-17 131.2 10.9 112 17-163 14-130 (187)
80 2gj8_A MNME, tRNA modification 99.4 1.2E-12 4.1E-17 128.8 11.6 113 20-163 5-128 (172)
81 1kao_A RAP2A; GTP-binding prot 99.4 2E-12 6.9E-17 125.0 13.1 114 19-163 3-121 (167)
82 3clv_A RAB5 protein, putative; 99.4 2.3E-12 7.8E-17 129.2 13.9 65 98-162 93-159 (208)
83 3i8s_A Ferrous iron transport 99.4 8.3E-13 2.9E-17 140.2 11.2 111 19-163 3-125 (274)
84 1c1y_A RAS-related protein RAP 99.4 2.6E-12 8.9E-17 124.5 13.7 114 19-163 3-121 (167)
85 1zbd_A Rabphilin-3A; G protein 99.4 9.7E-13 3.3E-17 132.6 10.9 116 18-163 7-126 (203)
86 4dcu_A GTP-binding protein ENG 99.4 2.6E-13 8.9E-18 154.8 7.4 116 17-163 21-144 (456)
87 2hup_A RAS-related protein RAB 99.4 2.7E-12 9.2E-17 129.5 14.1 117 17-163 27-147 (201)
88 1m2o_B GTP-binding protein SAR 99.4 1.8E-12 6.2E-17 129.6 12.7 112 17-163 21-137 (190)
89 3bc1_A RAS-related protein RAB 99.4 2.9E-12 9.8E-17 127.5 14.1 126 17-163 9-140 (195)
90 1g16_A RAS-related protein SEC 99.4 1.3E-12 4.3E-17 127.1 11.2 116 18-163 2-121 (170)
91 2fu5_C RAS-related protein RAB 99.4 6.9E-13 2.3E-17 131.2 9.3 117 17-163 6-126 (183)
92 2oil_A CATX-8, RAS-related pro 99.4 1.3E-12 4.6E-17 130.4 11.5 118 16-163 22-143 (193)
93 2gf9_A RAS-related protein RAB 99.4 9.1E-13 3.1E-17 131.3 10.1 117 17-163 20-140 (189)
94 2b6h_A ADP-ribosylation factor 99.4 2.1E-12 7.1E-17 129.4 12.7 112 17-163 27-143 (192)
95 2fg5_A RAB-22B, RAS-related pr 99.4 1.4E-12 4.6E-17 130.5 11.3 117 17-163 21-141 (192)
96 1x3s_A RAS-related protein RAB 99.4 2.5E-12 8.6E-17 128.3 13.2 117 17-163 13-134 (195)
97 1f6b_A SAR1; gtpases, N-termin 99.4 1.5E-12 5.3E-17 131.0 11.6 112 17-163 23-139 (198)
98 2ew1_A RAS-related protein RAB 99.4 1E-12 3.5E-17 132.8 10.3 121 13-163 20-144 (201)
99 1z06_A RAS-related protein RAB 99.4 1.2E-12 4.3E-17 130.3 10.7 117 17-163 18-140 (189)
100 1jwy_B Dynamin A GTPase domain 99.4 1.7E-12 5.7E-17 140.6 12.6 67 97-163 130-211 (315)
101 1z0j_A RAB-22, RAS-related pro 99.4 2E-12 6.8E-17 125.7 11.9 116 18-163 5-124 (170)
102 3llu_A RAS-related GTP-binding 99.4 1.6E-12 5.4E-17 130.6 11.4 118 16-163 17-142 (196)
103 2erx_A GTP-binding protein DI- 99.4 2.1E-12 7.2E-17 125.7 11.9 114 19-163 3-122 (172)
104 3a1s_A Iron(II) transport prot 99.4 1.7E-12 5.9E-17 136.5 12.0 112 18-163 4-123 (258)
105 1z2a_A RAS-related protein RAB 99.4 7.9E-13 2.7E-17 128.3 8.7 117 17-163 3-122 (168)
106 2bov_A RAla, RAS-related prote 99.4 8.1E-12 2.8E-16 125.8 16.3 117 16-163 11-132 (206)
107 3t5g_A GTP-binding protein RHE 99.4 2.2E-12 7.6E-17 127.2 11.8 115 18-163 5-124 (181)
108 1h65_A Chloroplast outer envel 99.4 5.8E-12 2E-16 133.4 15.7 116 17-163 37-167 (270)
109 2bcg_Y Protein YP2, GTP-bindin 99.4 1.2E-12 4.2E-17 132.2 9.9 117 17-163 6-126 (206)
110 2gf0_A GTP-binding protein DI- 99.4 2.1E-12 7E-17 129.5 11.1 117 16-163 5-127 (199)
111 2ce2_X GTPase HRAS; signaling 99.4 5.7E-12 2E-16 121.6 13.8 113 20-163 4-121 (166)
112 1z08_A RAS-related protein RAB 99.4 2.9E-12 9.9E-17 124.7 11.8 116 18-163 5-124 (170)
113 2nzj_A GTP-binding protein REM 99.4 2.3E-12 7.9E-17 126.0 11.1 115 18-163 3-124 (175)
114 1mky_A Probable GTP-binding pr 99.4 3E-12 1E-16 145.2 13.6 115 18-163 179-305 (439)
115 4dsu_A GTPase KRAS, isoform 2B 99.4 3.3E-12 1.1E-16 126.6 12.2 114 19-163 4-122 (189)
116 3cph_A RAS-related protein SEC 99.4 2.8E-12 9.6E-17 130.1 11.9 117 17-163 18-138 (213)
117 2h17_A ADP-ribosylation factor 99.3 1.7E-12 5.8E-17 128.4 9.9 111 18-163 20-135 (181)
118 2wji_A Ferrous iron transport 99.3 3.8E-12 1.3E-16 124.0 12.2 111 19-163 3-121 (165)
119 3reg_A RHO-like small GTPase; 99.3 3E-12 1E-16 128.1 11.7 115 17-163 21-140 (194)
120 2f7s_A C25KG, RAS-related prot 99.3 1.7E-12 5.7E-17 132.4 9.9 127 17-163 23-154 (217)
121 1moz_A ARL1, ADP-ribosylation 99.3 1.4E-12 4.7E-17 128.9 8.9 112 17-163 16-132 (183)
122 4djt_A GTP-binding nuclear pro 99.3 1.4E-12 4.7E-17 133.1 8.9 121 14-163 6-130 (218)
123 2a5j_A RAS-related protein RAB 99.3 1.8E-12 6.3E-17 129.4 9.6 117 17-163 19-139 (191)
124 3dz8_A RAS-related protein RAB 99.3 1E-12 3.5E-17 131.3 7.4 117 17-163 21-141 (191)
125 1nrj_B SR-beta, signal recogni 99.3 7.7E-12 2.6E-16 127.5 14.1 111 17-163 10-133 (218)
126 3gj0_A GTP-binding nuclear pro 99.3 2E-12 6.9E-17 132.4 9.7 118 16-163 12-132 (221)
127 4gzl_A RAS-related C3 botulinu 99.3 1.7E-12 6E-17 131.3 9.0 116 17-163 28-147 (204)
128 2wjg_A FEOB, ferrous iron tran 99.3 5.6E-12 1.9E-16 125.2 12.4 112 18-163 6-125 (188)
129 2x77_A ADP-ribosylation factor 99.3 1.1E-12 3.6E-17 130.7 7.0 112 17-163 20-136 (189)
130 3r7w_A Gtpase1, GTP-binding pr 99.3 4.3E-12 1.5E-16 137.0 12.3 115 19-163 3-128 (307)
131 3con_A GTPase NRAS; structural 99.3 1.2E-11 4.3E-16 122.9 14.2 114 19-163 21-139 (190)
132 3q72_A GTP-binding protein RAD 99.3 3.3E-12 1.1E-16 123.9 9.7 113 19-163 2-119 (166)
133 2o52_A RAS-related protein RAB 99.3 1.6E-12 5.3E-17 131.1 7.5 117 17-163 23-143 (200)
134 2atx_A Small GTP binding prote 99.3 7.3E-12 2.5E-16 125.2 12.4 115 18-163 17-135 (194)
135 3oes_A GTPase rhebl1; small GT 99.3 4.7E-12 1.6E-16 127.6 10.9 116 17-163 22-142 (201)
136 2yc2_C IFT27, small RAB-relate 99.3 2.4E-12 8.2E-17 129.8 8.5 118 18-163 19-145 (208)
137 3q85_A GTP-binding protein REM 99.3 4.8E-12 1.6E-16 123.1 10.4 115 19-163 2-122 (169)
138 1mh1_A RAC1; GTP-binding, GTPa 99.3 2.6E-12 9E-17 127.0 8.6 114 19-163 5-122 (186)
139 3lxx_A GTPase IMAP family memb 99.3 5.3E-12 1.8E-16 131.1 11.1 117 16-163 26-158 (239)
140 3gee_A MNME, tRNA modification 99.3 2.8E-12 9.4E-17 146.1 9.7 111 20-163 234-356 (476)
141 3l0i_B RAS-related protein RAB 99.3 3.5E-13 1.2E-17 135.7 2.0 117 17-163 31-151 (199)
142 1m7b_A RND3/RHOE small GTP-bin 99.3 6.2E-12 2.1E-16 124.7 10.9 115 17-163 5-124 (184)
143 3t5d_A Septin-7; GTP-binding p 99.3 2.4E-11 8.1E-16 129.0 15.9 122 19-163 8-157 (274)
144 3cpj_B GTP-binding protein YPT 99.3 2.5E-12 8.4E-17 132.0 7.9 117 17-163 11-131 (223)
145 2ged_A SR-beta, signal recogni 99.3 6.9E-12 2.3E-16 125.2 10.6 129 17-185 46-188 (193)
146 2qu8_A Putative nucleolar GTP- 99.3 1.8E-11 6.3E-16 126.0 14.0 115 17-163 27-155 (228)
147 3geh_A MNME, tRNA modification 99.3 3E-12 1E-16 145.3 8.5 111 20-163 225-343 (462)
148 2j0v_A RAC-like GTP-binding pr 99.3 6.7E-12 2.3E-16 127.4 10.0 114 18-163 8-126 (212)
149 3o47_A ADP-ribosylation factor 99.3 1.1E-11 3.6E-16 135.2 12.1 109 20-163 166-279 (329)
150 2p67_A LAO/AO transport system 99.3 1.5E-11 5.1E-16 134.7 13.3 61 96-163 147-207 (341)
151 2fv8_A H6, RHO-related GTP-bin 99.3 7.5E-12 2.5E-16 126.8 10.0 115 18-163 24-142 (207)
152 1xzp_A Probable tRNA modificat 99.3 5.7E-12 1.9E-16 143.6 10.1 111 20-163 244-363 (482)
153 1gwn_A RHO-related GTP-binding 99.3 1.1E-11 3.6E-16 125.7 11.0 116 16-163 25-145 (205)
154 2atv_A RERG, RAS-like estrogen 99.3 4.6E-11 1.6E-15 119.6 15.5 113 18-163 27-145 (196)
155 2j1l_A RHO-related GTP-binding 99.3 7.7E-12 2.6E-16 127.5 9.8 114 18-163 33-151 (214)
156 2q3h_A RAS homolog gene family 99.3 6E-12 2E-16 126.6 8.9 115 17-163 18-137 (201)
157 3bwd_D RAC-like GTP-binding pr 99.3 2.4E-12 8.1E-17 126.9 5.6 115 18-163 7-125 (182)
158 2gco_A H9, RHO-related GTP-bin 99.3 5.2E-12 1.8E-16 127.3 8.0 114 19-163 25-142 (201)
159 3q3j_B RHO-related GTP-binding 99.3 1.1E-11 3.7E-16 126.5 10.5 114 18-163 26-144 (214)
160 3c5c_A RAS-like protein 12; GD 99.3 2.4E-11 8.3E-16 120.9 12.7 114 17-163 19-140 (187)
161 3b1v_A Ferrous iron uptake tra 99.2 8.1E-12 2.8E-16 132.2 8.8 110 19-163 3-120 (272)
162 3ihw_A Centg3; RAS, centaurin, 99.2 7.5E-11 2.6E-15 117.1 15.4 110 17-163 18-132 (184)
163 4dkx_A RAS-related protein RAB 99.2 4.3E-11 1.5E-15 122.2 13.8 118 16-163 10-131 (216)
164 2qpt_A EH domain-containing pr 99.2 2.5E-11 8.4E-16 141.0 13.1 66 98-163 154-231 (550)
165 2iwr_A Centaurin gamma 1; ANK 99.2 9.6E-11 3.3E-15 115.1 14.7 109 18-163 6-121 (178)
166 2aka_B Dynamin-1; fusion prote 99.2 3.9E-11 1.3E-15 128.7 12.8 67 97-163 124-205 (299)
167 3cbq_A GTP-binding protein REM 99.2 6.1E-11 2.1E-15 119.0 12.7 117 17-163 21-143 (195)
168 3th5_A RAS-related C3 botulinu 98.8 1.9E-12 6.4E-17 130.8 0.0 116 17-163 28-147 (204)
169 3lvq_E ARF-GAP with SH3 domain 99.2 6.5E-11 2.2E-15 136.6 11.7 111 18-163 321-436 (497)
170 2cxx_A Probable GTP-binding pr 99.2 5.9E-11 2E-15 117.7 9.6 108 20-163 2-135 (190)
171 2wkq_A NPH1-1, RAS-related C3 99.1 1.6E-10 5.6E-15 125.5 9.6 116 17-163 153-272 (332)
172 2j69_A Bacterial dynamin-like 99.1 4.6E-10 1.6E-14 134.0 14.1 66 98-163 174-243 (695)
173 2qtf_A Protein HFLX, GTP-bindi 99.1 9.5E-10 3.2E-14 121.1 15.2 114 18-163 178-305 (364)
174 3dpu_A RAB family protein; roc 99.0 5.2E-10 1.8E-14 130.1 12.3 123 17-163 39-163 (535)
175 1lnz_A SPO0B-associated GTP-bi 99.0 1.9E-10 6.4E-15 125.5 7.6 114 19-163 158-287 (342)
176 3t34_A Dynamin-related protein 99.0 8.2E-10 2.8E-14 121.9 12.2 67 97-163 135-216 (360)
177 2g3y_A GTP-binding protein GEM 99.0 7.3E-10 2.5E-14 112.7 10.7 118 17-163 35-158 (211)
178 2f9l_A RAB11B, member RAS onco 99.0 7.3E-10 2.5E-14 111.2 10.6 115 19-163 5-123 (199)
179 2zej_A Dardarin, leucine-rich 99.0 2.8E-10 9.5E-15 112.8 7.4 119 20-163 3-125 (184)
180 2x2e_A Dynamin-1; nitration, h 99.0 7.5E-10 2.6E-14 121.8 11.5 67 97-163 129-210 (353)
181 1pui_A ENGB, probable GTP-bind 99.0 1.1E-09 3.9E-14 110.6 11.9 113 18-163 25-150 (210)
182 2e87_A Hypothetical protein PH 99.0 1.4E-09 4.6E-14 120.0 13.4 115 17-163 165-293 (357)
183 3r7w_B Gtpase2, GTP-binding pr 99.0 7.6E-10 2.6E-14 118.8 9.7 110 21-163 1-119 (331)
184 2cjw_A GTP-binding protein GEM 99.0 1.5E-09 5E-14 108.5 10.9 117 18-163 5-127 (192)
185 2qag_A Septin-2, protein NEDD5 99.0 2E-09 6.8E-14 118.6 11.7 124 18-163 36-187 (361)
186 1wxq_A GTP-binding protein; st 98.9 9.2E-10 3.1E-14 122.6 8.4 38 97-134 70-114 (397)
187 1oix_A RAS-related protein RAB 98.9 3E-09 1E-13 106.2 9.9 116 18-163 28-147 (191)
188 4a9a_A Ribosome-interacting GT 98.9 4.3E-09 1.5E-13 115.6 10.8 112 19-163 72-195 (376)
189 3p32_A Probable GTPase RV1496/ 98.9 2.4E-09 8.3E-14 117.8 8.5 61 96-163 170-230 (355)
190 3zvr_A Dynamin-1; hydrolase, D 98.9 8.5E-09 2.9E-13 122.3 13.0 67 97-163 149-230 (772)
191 2wsm_A Hydrogenase expression/ 98.8 3.5E-09 1.2E-13 107.9 4.6 135 17-163 28-167 (221)
192 2j37_W Signal recognition part 98.7 9.6E-09 3.3E-13 117.1 6.5 136 17-163 99-253 (504)
193 3c5h_A Glucocorticoid receptor 98.7 1.5E-08 5.1E-13 106.1 6.0 43 121-163 162-211 (255)
194 1udx_A The GTP-binding protein 98.6 1.5E-07 5.1E-12 105.0 12.6 114 19-163 157-282 (416)
195 1jal_A YCHF protein; nucleotid 98.6 6.8E-08 2.3E-12 105.5 8.5 98 20-133 3-108 (363)
196 2www_A Methylmalonic aciduria 98.6 8.7E-08 3E-12 105.0 8.8 61 96-163 165-225 (349)
197 2dby_A GTP-binding protein; GD 98.5 5.1E-07 1.8E-11 99.1 13.2 98 20-133 2-111 (368)
198 1yrb_A ATP(GTP)binding protein 98.5 1.5E-07 5E-12 98.6 8.2 66 97-163 108-184 (262)
199 2qag_C Septin-7; cell cycle, c 98.5 8.1E-07 2.8E-11 99.1 14.5 121 20-163 32-180 (418)
200 3sop_A Neuronal-specific septi 98.4 1.9E-06 6.4E-11 90.8 14.7 120 20-163 3-153 (270)
201 3ec1_A YQEH GTPase; atnos1, at 98.4 4.2E-08 1.4E-12 108.3 2.0 116 19-163 162-287 (369)
202 2qag_B Septin-6, protein NEDD5 98.4 1.1E-06 3.9E-11 97.6 12.4 120 17-163 40-189 (427)
203 3h2y_A GTPase family protein; 98.4 1.1E-07 3.9E-12 104.7 3.1 116 19-163 160-286 (368)
204 2qnr_A Septin-2, protein NEDD5 98.3 4.9E-06 1.7E-10 89.1 13.2 122 20-163 19-168 (301)
205 2ohf_A Protein OLA1, GTP-bindi 98.3 8.6E-07 2.9E-11 97.7 7.4 106 12-133 15-128 (396)
206 2qm8_A GTPase/ATPase; G protei 98.2 1.2E-06 4.1E-11 95.4 5.4 61 96-163 146-206 (337)
207 2v3c_C SRP54, signal recogniti 98.1 3.9E-06 1.3E-10 94.2 9.1 65 96-163 179-251 (432)
208 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 7.8E-06 2.7E-10 90.3 9.4 107 12-133 13-127 (392)
209 2xxa_A Signal recognition part 98.0 9.8E-06 3.4E-10 90.9 9.3 136 18-163 99-253 (433)
210 3kl4_A SRP54, signal recogniti 98.0 1.2E-05 4.3E-10 89.7 9.2 66 96-163 178-251 (433)
211 2hf9_A Probable hydrogenase ni 98.0 5.9E-06 2E-10 84.1 5.6 27 17-43 36-62 (226)
212 3dm5_A SRP54, signal recogniti 97.9 2.3E-05 7.7E-10 87.6 10.4 65 97-163 182-252 (443)
213 1f5n_A Interferon-induced guan 97.9 1.4E-05 4.9E-10 92.5 8.2 117 6-148 25-147 (592)
214 1j8m_F SRP54, signal recogniti 97.9 2.4E-05 8.3E-10 83.4 8.4 135 19-163 98-252 (297)
215 1cip_A Protein (guanine nucleo 97.8 2.3E-05 8E-10 85.5 7.1 67 97-163 192-273 (353)
216 1zcb_A G alpha I/13; GTP-bindi 97.6 4.7E-05 1.6E-09 83.4 6.3 67 97-163 200-281 (362)
217 4dzz_A Plasmid partitioning pr 97.6 0.00017 5.8E-09 71.9 8.8 64 97-163 75-143 (206)
218 4fid_A G protein alpha subunit 97.5 6.5E-05 2.2E-09 81.2 5.3 67 97-163 160-241 (340)
219 3szr_A Interferon-induced GTP- 97.4 0.00042 1.4E-08 81.3 11.6 66 98-163 147-227 (608)
220 1azs_C GS-alpha; complex (lyas 97.4 0.00012 4.2E-09 80.9 6.4 67 97-163 216-297 (402)
221 3ohm_A Guanine nucleotide-bind 97.4 0.00012 4.1E-09 78.7 6.0 67 97-163 166-247 (327)
222 1tq4_A IIGP1, interferon-induc 97.4 0.0003 1E-08 78.2 8.9 115 20-164 70-189 (413)
223 1puj_A YLQF, conserved hypothe 97.4 0.00015 5.3E-09 76.6 5.8 26 18-43 119-144 (282)
224 1zu4_A FTSY; GTPase, signal re 97.3 0.00034 1.2E-08 75.3 7.6 63 96-163 190-267 (320)
225 3cnl_A YLQF, putative uncharac 97.2 0.00014 4.8E-09 76.0 3.6 23 20-42 100-122 (262)
226 3e1y_E Eukaryotic peptide chai 97.2 0.00053 1.8E-08 68.7 7.5 83 373-471 4-89 (204)
227 3e70_C DPA, signal recognition 97.2 0.00058 2E-08 73.7 8.1 65 97-163 211-281 (328)
228 3cwq_A Para family chromosome 97.1 0.00083 2.8E-08 67.5 7.5 65 97-163 67-133 (209)
229 2yhs_A FTSY, cell division pro 97.1 0.00099 3.4E-08 75.1 8.6 24 19-42 293-316 (503)
230 2xtz_A Guanine nucleotide-bind 97.1 0.00034 1.2E-08 76.3 4.7 68 96-163 181-263 (354)
231 3q5d_A Atlastin-1; G protein, 97.0 0.0032 1.1E-07 70.4 11.7 39 4-42 48-90 (447)
232 2ffh_A Protein (FFH); SRP54, s 97.0 0.00088 3E-08 74.6 6.9 65 96-163 179-250 (425)
233 2px0_A Flagellar biosynthesis 96.9 0.00071 2.4E-08 71.9 5.6 64 96-163 181-252 (296)
234 1vma_A Cell division protein F 96.9 0.0011 3.9E-08 70.6 6.6 24 19-42 104-127 (306)
235 1rj9_A FTSY, signal recognitio 96.9 0.0018 6.2E-08 69.0 8.1 24 19-42 102-125 (304)
236 1ls1_A Signal recognition part 96.6 0.0024 8.2E-08 67.8 6.6 64 97-163 180-250 (295)
237 1u0l_A Probable GTPase ENGC; p 96.6 0.0009 3.1E-08 71.4 3.0 63 99-163 64-128 (301)
238 2cve_A Hypothetical protein TT 96.4 0.0066 2.3E-07 59.2 8.0 110 679-795 80-190 (191)
239 3end_A Light-independent proto 96.4 0.0059 2E-07 65.0 8.5 66 96-162 155-225 (307)
240 1vi7_A Hypothetical protein YI 96.3 0.0046 1.6E-07 61.6 6.2 112 679-796 92-203 (217)
241 1puj_A YLQF, conserved hypothe 96.3 0.0028 9.6E-08 66.8 5.1 60 102-163 3-63 (282)
242 2oze_A ORF delta'; para, walke 95.9 0.026 9E-07 59.5 10.3 66 96-163 153-225 (298)
243 3b9q_A Chloroplast SRP recepto 95.9 0.017 5.9E-07 61.3 8.7 136 19-163 100-259 (302)
244 3ea0_A ATPase, para family; al 95.9 0.023 8E-07 57.8 9.3 65 97-163 118-185 (245)
245 2og2_A Putative signal recogni 95.7 0.036 1.2E-06 60.2 10.5 24 19-42 157-180 (359)
246 3ec1_A YQEH GTPase; atnos1, at 95.6 0.01 3.4E-07 65.1 5.7 62 99-163 50-111 (369)
247 3cnl_A YLQF, putative uncharac 95.2 0.0048 1.6E-07 64.3 1.2 54 106-163 5-59 (262)
248 2yv5_A YJEQ protein; hydrolase 95.2 0.0097 3.3E-07 63.3 3.6 56 108-163 66-123 (302)
249 2ph1_A Nucleotide-binding prot 94.8 0.061 2.1E-06 55.6 8.4 67 96-162 127-194 (262)
250 1t9h_A YLOQ, probable GTPase E 94.7 0.013 4.4E-07 62.4 2.9 22 20-41 174-195 (307)
251 3l82_B F-box only protein 4; T 94.6 0.04 1.4E-06 54.8 5.9 65 99-163 97-176 (227)
252 4ido_A Atlastin-1; GTPase, GTP 94.5 0.19 6.5E-06 55.9 11.7 39 4-42 48-90 (457)
253 3h2y_A GTPase family protein; 94.5 0.026 9E-07 61.7 4.8 54 108-163 56-109 (368)
254 2yv5_A YJEQ protein; hydrolase 93.9 0.061 2.1E-06 57.1 6.0 21 20-40 166-186 (302)
255 1cp2_A CP2, nitrogenase iron p 93.7 0.29 9.9E-06 50.4 10.7 67 96-162 114-186 (269)
256 1u0l_A Probable GTPase ENGC; p 93.4 0.051 1.8E-06 57.6 4.4 22 20-41 170-191 (301)
257 1ye8_A Protein THEP1, hypothet 93.0 0.052 1.8E-06 52.8 3.4 25 20-44 1-25 (178)
258 1t9h_A YLOQ, probable GTPase E 92.9 0.12 4E-06 54.9 6.1 47 117-163 82-130 (307)
259 1g3q_A MIND ATPase, cell divis 92.8 0.12 4.2E-06 52.1 6.1 66 96-163 110-176 (237)
260 1wcv_1 SOJ, segregation protei 92.8 0.25 8.6E-06 50.7 8.5 66 96-163 110-182 (257)
261 1lvg_A Guanylate kinase, GMP k 92.7 0.054 1.8E-06 53.6 3.1 23 20-42 5-27 (198)
262 3lh2_S 4E10_1VI7A_S0_002_N (T8 92.5 0.085 2.9E-06 43.5 3.6 62 731-795 9-70 (76)
263 1kgd_A CASK, peripheral plasma 92.5 0.066 2.3E-06 51.9 3.4 24 20-43 6-29 (180)
264 1hyq_A MIND, cell division inh 92.4 0.13 4.6E-06 52.8 5.7 65 97-163 110-175 (263)
265 1zp6_A Hypothetical protein AT 92.4 0.075 2.6E-06 51.7 3.6 24 18-41 8-31 (191)
266 3l2o_B F-box only protein 4; s 92.4 0.19 6.3E-06 52.5 6.6 58 106-163 195-261 (312)
267 1knq_A Gluconate kinase; ALFA/ 92.3 0.094 3.2E-06 50.3 4.1 27 18-44 7-33 (175)
268 3a00_A Guanylate kinase, GMP k 92.1 0.069 2.3E-06 52.1 3.0 24 20-43 2-25 (186)
269 3bfv_A CAPA1, CAPB2, membrane 92.1 0.19 6.5E-06 52.3 6.5 66 97-163 191-257 (271)
270 3la6_A Tyrosine-protein kinase 92.0 0.19 6.7E-06 52.7 6.5 66 97-163 201-267 (286)
271 3kb2_A SPBC2 prophage-derived 91.7 0.097 3.3E-06 49.8 3.4 24 20-43 2-25 (173)
272 3c8u_A Fructokinase; YP_612366 91.7 0.13 4.6E-06 50.9 4.6 26 17-42 20-45 (208)
273 1xe1_A Hypothetical protein PF 91.7 0.55 1.9E-05 41.6 7.9 50 390-455 48-97 (116)
274 1znw_A Guanylate kinase, GMP k 91.6 0.09 3.1E-06 52.2 3.2 25 19-43 20-44 (207)
275 3tr0_A Guanylate kinase, GMP k 91.6 0.091 3.1E-06 51.7 3.2 24 20-43 8-31 (205)
276 4eun_A Thermoresistant glucoki 91.5 0.11 3.9E-06 51.1 3.7 34 10-44 21-54 (200)
277 1bif_A 6-phosphofructo-2-kinas 91.2 0.12 4.1E-06 58.4 4.1 24 19-42 39-62 (469)
278 3kjh_A CO dehydrogenase/acetyl 91.2 0.13 4.5E-06 52.1 4.1 65 96-162 130-195 (254)
279 1xjc_A MOBB protein homolog; s 91.1 0.12 4.3E-06 49.6 3.5 25 18-42 3-27 (169)
280 1kag_A SKI, shikimate kinase I 91.1 0.12 4.1E-06 49.3 3.4 23 20-42 5-27 (173)
281 3asz_A Uridine kinase; cytidin 91.1 0.14 4.6E-06 50.8 3.9 25 18-42 5-29 (211)
282 1z6g_A Guanylate kinase; struc 91.0 0.11 3.8E-06 52.1 3.2 25 19-43 23-47 (218)
283 3zq6_A Putative arsenical pump 91.0 0.73 2.5E-05 49.1 9.8 41 123-163 223-264 (324)
284 1htw_A HI0065; nucleotide-bind 90.9 0.12 4.1E-06 49.1 3.2 25 19-43 33-57 (158)
285 3ney_A 55 kDa erythrocyte memb 90.9 0.13 4.5E-06 50.8 3.5 26 18-43 18-43 (197)
286 3cio_A ETK, tyrosine-protein k 90.8 0.39 1.3E-05 50.6 7.3 66 97-163 213-279 (299)
287 1s96_A Guanylate kinase, GMP k 90.7 0.13 4.6E-06 51.7 3.4 25 19-43 16-40 (219)
288 3q9l_A Septum site-determining 90.6 0.26 8.8E-06 50.4 5.6 65 97-163 113-186 (260)
289 1np6_A Molybdopterin-guanine d 90.6 0.16 5.4E-06 49.2 3.7 24 19-42 6-29 (174)
290 4gp7_A Metallophosphoesterase; 90.5 0.12 4.2E-06 49.6 2.9 20 20-39 10-29 (171)
291 3lw7_A Adenylate kinase relate 90.5 0.16 5.5E-06 48.1 3.6 24 20-44 2-25 (179)
292 1ex7_A Guanylate kinase; subst 90.4 0.14 4.8E-06 50.1 3.2 24 20-43 2-25 (186)
293 2if2_A Dephospho-COA kinase; a 90.4 0.14 4.8E-06 50.4 3.2 22 20-41 2-23 (204)
294 2xj4_A MIPZ; replication, cell 90.3 0.16 5.5E-06 53.2 3.8 35 97-133 103-137 (286)
295 3t61_A Gluconokinase; PSI-biol 90.3 0.17 5.7E-06 49.8 3.7 26 19-44 18-43 (202)
296 2f1r_A Molybdopterin-guanine d 90.2 0.089 3E-06 50.8 1.5 23 20-42 3-25 (171)
297 3tau_A Guanylate kinase, GMP k 90.1 0.17 6E-06 50.2 3.7 25 19-43 8-32 (208)
298 3vaa_A Shikimate kinase, SK; s 90.1 0.18 6.3E-06 49.5 3.8 27 18-44 24-50 (199)
299 3k9g_A PF-32 protein; ssgcid, 90.0 0.42 1.4E-05 49.2 6.6 66 96-163 143-210 (267)
300 2j41_A Guanylate kinase; GMP, 90.0 0.17 5.8E-06 49.7 3.5 23 20-42 7-29 (207)
301 1zd8_A GTP:AMP phosphotransfer 89.8 0.2 7E-06 50.3 4.0 27 18-44 6-32 (227)
302 1nks_A Adenylate kinase; therm 89.8 0.18 6.1E-06 48.8 3.4 23 20-42 2-24 (194)
303 3tif_A Uncharacterized ABC tra 89.7 0.15 5.2E-06 51.9 2.9 20 20-39 32-51 (235)
304 2pcj_A ABC transporter, lipopr 89.6 0.16 5.6E-06 51.2 3.1 20 20-39 31-50 (224)
305 2bdt_A BH3686; alpha-beta prot 89.6 0.18 6.1E-06 49.0 3.2 22 20-41 3-24 (189)
306 1jjv_A Dephospho-COA kinase; P 89.4 0.19 6.4E-06 49.6 3.3 22 20-41 3-24 (206)
307 2bbw_A Adenylate kinase 4, AK4 89.4 0.21 7.3E-06 50.9 3.8 27 19-45 27-53 (246)
308 3pfi_A Holliday junction ATP-d 89.4 3.2 0.00011 43.9 13.4 26 17-42 53-78 (338)
309 2qor_A Guanylate kinase; phosp 89.3 0.19 6.6E-06 49.6 3.3 25 19-43 12-36 (204)
310 3b85_A Phosphate starvation-in 89.2 0.17 5.7E-06 50.5 2.7 23 20-42 23-45 (208)
311 3trf_A Shikimate kinase, SK; a 89.2 0.22 7.6E-06 48.0 3.6 25 19-43 5-29 (185)
312 2onk_A Molybdate/tungstate ABC 89.2 0.17 5.8E-06 51.7 2.8 22 20-41 25-46 (240)
313 2c95_A Adenylate kinase 1; tra 89.2 0.26 8.8E-06 47.9 4.1 26 19-44 9-34 (196)
314 1uf9_A TT1252 protein; P-loop, 89.2 0.28 9.4E-06 48.0 4.3 26 17-42 6-31 (203)
315 3lnc_A Guanylate kinase, GMP k 89.0 0.14 4.7E-06 51.7 1.9 21 20-40 28-48 (231)
316 1ukz_A Uridylate kinase; trans 88.9 0.29 9.9E-06 48.0 4.3 28 17-44 13-40 (203)
317 2v9p_A Replication protein E1; 88.8 0.28 9.6E-06 51.9 4.2 26 17-42 124-149 (305)
318 1ly1_A Polynucleotide kinase; 88.8 0.22 7.6E-06 47.6 3.2 22 20-41 3-24 (181)
319 3tlx_A Adenylate kinase 2; str 88.7 0.35 1.2E-05 49.2 4.9 28 17-44 27-54 (243)
320 2jeo_A Uridine-cytidine kinase 88.7 0.23 7.8E-06 50.7 3.4 27 18-44 24-50 (245)
321 1via_A Shikimate kinase; struc 88.6 0.24 8.2E-06 47.4 3.3 24 20-43 5-28 (175)
322 2eyu_A Twitching motility prot 88.6 0.24 8.1E-06 51.3 3.4 25 18-42 24-48 (261)
323 2i3b_A HCR-ntpase, human cance 88.6 0.22 7.6E-06 48.8 3.0 22 21-42 3-24 (189)
324 3ec2_A DNA replication protein 88.6 0.21 7.2E-06 48.1 2.9 24 19-42 38-61 (180)
325 3zvl_A Bifunctional polynucleo 88.6 0.71 2.4E-05 51.1 7.6 25 18-42 257-281 (416)
326 1cke_A CK, MSSA, protein (cyti 88.4 0.26 8.9E-06 49.3 3.6 25 20-44 6-30 (227)
327 2qt1_A Nicotinamide riboside k 88.4 0.27 9.3E-06 48.5 3.7 26 17-42 19-44 (207)
328 1b0u_A Histidine permease; ABC 88.4 0.21 7.1E-06 51.7 2.8 20 20-39 33-52 (262)
329 1g6h_A High-affinity branched- 88.4 0.21 7.2E-06 51.5 2.9 20 20-39 34-53 (257)
330 2d2e_A SUFC protein; ABC-ATPas 88.3 0.21 7.3E-06 51.2 2.9 22 20-41 30-51 (250)
331 4g1u_C Hemin import ATP-bindin 88.3 0.21 7.3E-06 51.8 2.9 20 20-39 38-57 (266)
332 2cbz_A Multidrug resistance-as 88.3 0.22 7.4E-06 50.8 2.9 20 20-39 32-51 (237)
333 1byi_A Dethiobiotin synthase; 88.3 1.7 5.9E-05 43.0 9.6 67 97-163 108-180 (224)
334 2pze_A Cystic fibrosis transme 88.3 0.22 7.4E-06 50.5 2.8 20 20-39 35-54 (229)
335 3gfo_A Cobalt import ATP-bindi 88.2 0.21 7.3E-06 52.0 2.8 21 20-40 35-55 (275)
336 1sgw_A Putative ABC transporte 88.2 0.22 7.7E-06 49.8 2.8 20 20-39 36-55 (214)
337 2rcn_A Probable GTPase ENGC; Y 88.1 0.24 8.3E-06 53.6 3.2 23 20-42 216-238 (358)
338 3aez_A Pantothenate kinase; tr 88.1 0.31 1.1E-05 51.8 4.0 25 17-41 88-112 (312)
339 2jaq_A Deoxyguanosine kinase; 88.1 0.28 9.7E-06 47.9 3.5 23 21-43 2-24 (205)
340 1y63_A LMAJ004144AAA protein; 88.1 0.28 9.5E-06 47.5 3.4 25 18-42 9-33 (184)
341 1ji0_A ABC transporter; ATP bi 88.0 0.23 7.8E-06 50.7 2.9 20 20-39 33-52 (240)
342 1mv5_A LMRA, multidrug resista 88.0 0.24 8.3E-06 50.6 3.0 21 20-40 29-49 (243)
343 2bwj_A Adenylate kinase 5; pho 88.0 0.18 6.2E-06 49.2 2.0 25 20-44 13-37 (199)
344 1qhx_A CPT, protein (chloramph 87.9 0.32 1.1E-05 46.5 3.7 24 20-43 4-27 (178)
345 2ff7_A Alpha-hemolysin translo 87.8 0.26 8.8E-06 50.6 3.1 20 20-39 36-55 (247)
346 3dl0_A Adenylate kinase; phosp 87.8 0.33 1.1E-05 48.1 3.9 24 21-44 2-25 (216)
347 2olj_A Amino acid ABC transpor 87.7 0.24 8.3E-06 51.2 2.8 20 20-39 51-70 (263)
348 3uie_A Adenylyl-sulfate kinase 87.6 0.31 1.1E-05 47.8 3.5 25 18-42 24-48 (200)
349 2zu0_C Probable ATP-dependent 87.6 0.25 8.5E-06 51.3 2.8 22 20-41 47-68 (267)
350 3fb4_A Adenylate kinase; psych 87.6 0.33 1.1E-05 48.2 3.6 24 21-44 2-25 (216)
351 1uj2_A Uridine-cytidine kinase 87.6 0.35 1.2E-05 49.5 4.0 27 18-44 21-47 (252)
352 3cm0_A Adenylate kinase; ATP-b 87.6 0.38 1.3E-05 46.3 4.1 26 19-44 4-29 (186)
353 3iij_A Coilin-interacting nucl 87.6 0.33 1.1E-05 46.6 3.6 26 18-43 10-35 (180)
354 2ghi_A Transport protein; mult 87.6 0.27 9.2E-06 50.8 3.1 22 20-41 47-68 (260)
355 1rz3_A Hypothetical protein rb 87.5 0.47 1.6E-05 46.7 4.7 25 17-41 20-44 (201)
356 2rhm_A Putative kinase; P-loop 87.5 0.39 1.3E-05 46.5 4.1 25 19-43 5-29 (193)
357 4a74_A DNA repair and recombin 87.5 0.3 1E-05 48.7 3.4 36 7-42 12-48 (231)
358 3fgn_A Dethiobiotin synthetase 87.4 1.7 5.7E-05 44.5 9.0 66 96-161 125-197 (251)
359 2wwf_A Thymidilate kinase, put 87.4 0.32 1.1E-05 48.0 3.4 24 19-42 10-33 (212)
360 1vpl_A ABC transporter, ATP-bi 87.4 0.26 8.9E-06 50.8 2.8 20 20-39 42-61 (256)
361 2ehv_A Hypothetical protein PH 87.4 0.27 9.4E-06 49.7 3.0 21 20-40 31-51 (251)
362 2qi9_C Vitamin B12 import ATP- 87.3 0.26 9E-06 50.5 2.8 20 20-39 27-46 (249)
363 1odf_A YGR205W, hypothetical 3 87.3 0.49 1.7E-05 49.7 5.0 26 17-42 29-54 (290)
364 3jvv_A Twitching mobility prot 87.3 0.38 1.3E-05 52.1 4.2 23 20-42 124-146 (356)
365 1kht_A Adenylate kinase; phosp 87.3 0.3 1E-05 47.1 3.1 23 20-42 4-26 (192)
366 4fcw_A Chaperone protein CLPB; 87.1 1.4 4.6E-05 46.2 8.4 23 20-42 48-70 (311)
367 2oap_1 GSPE-2, type II secreti 87.1 0.28 9.4E-06 55.9 3.1 24 19-42 260-283 (511)
368 1nij_A Hypothetical protein YJ 87.1 0.35 1.2E-05 51.5 3.7 25 18-42 3-27 (318)
369 2yz2_A Putative ABC transporte 87.1 0.28 9.6E-06 50.9 2.9 20 20-39 34-53 (266)
370 1tev_A UMP-CMP kinase; ploop, 87.0 0.38 1.3E-05 46.5 3.7 26 19-44 3-28 (196)
371 2kjq_A DNAA-related protein; s 86.9 0.3 1E-05 45.7 2.8 25 18-42 35-59 (149)
372 2ixe_A Antigen peptide transpo 86.9 0.29 9.8E-06 51.0 2.9 21 20-40 46-66 (271)
373 3tqc_A Pantothenate kinase; bi 86.9 0.36 1.2E-05 51.5 3.6 25 18-42 91-115 (321)
374 2ihy_A ABC transporter, ATP-bi 86.8 0.31 1.1E-05 50.9 3.0 20 20-39 48-67 (279)
375 3n70_A Transport activator; si 86.7 1.9 6.6E-05 39.7 8.3 25 17-41 22-46 (145)
376 2nq2_C Hypothetical ABC transp 86.7 0.29 1E-05 50.3 2.8 20 20-39 32-51 (253)
377 1aky_A Adenylate kinase; ATP:A 86.6 0.4 1.4E-05 47.8 3.7 27 18-44 3-29 (220)
378 1zuh_A Shikimate kinase; alpha 86.6 0.4 1.4E-05 45.5 3.5 27 18-44 6-32 (168)
379 3kta_A Chromosome segregation 86.5 0.38 1.3E-05 46.2 3.3 24 21-44 28-51 (182)
380 1jbk_A CLPB protein; beta barr 86.5 0.62 2.1E-05 44.4 4.9 25 18-42 42-66 (195)
381 2gza_A Type IV secretion syste 86.3 0.32 1.1E-05 52.8 3.0 24 19-42 175-198 (361)
382 1qf9_A UMP/CMP kinase, protein 86.3 0.52 1.8E-05 45.4 4.2 26 19-44 6-31 (194)
383 1hqc_A RUVB; extended AAA-ATPa 86.3 3.6 0.00012 43.2 11.2 25 18-42 37-61 (324)
384 2ze6_A Isopentenyl transferase 86.3 0.42 1.4E-05 49.0 3.7 25 20-44 2-26 (253)
385 1sq5_A Pantothenate kinase; P- 86.2 0.46 1.6E-05 50.3 4.1 26 17-42 78-103 (308)
386 2v1u_A Cell division control p 86.2 1.4 4.8E-05 47.5 8.1 26 17-42 42-67 (387)
387 2vli_A Antibiotic resistance p 86.2 0.36 1.2E-05 46.3 2.9 24 19-42 5-28 (183)
388 1ihu_A Arsenical pump-driving 86.1 1 3.5E-05 52.3 7.3 43 121-163 489-532 (589)
389 1zak_A Adenylate kinase; ATP:A 86.1 0.43 1.5E-05 47.6 3.6 27 18-44 4-30 (222)
390 4e22_A Cytidylate kinase; P-lo 85.9 0.48 1.7E-05 48.5 3.9 26 19-44 27-52 (252)
391 2v54_A DTMP kinase, thymidylat 85.8 0.39 1.3E-05 47.0 3.0 23 20-42 5-27 (204)
392 2pt7_A CAG-ALFA; ATPase, prote 85.8 0.3 1E-05 52.4 2.4 23 20-42 172-194 (330)
393 2wbm_A MTHSBDS, ribosome matur 85.8 1.2 4E-05 45.2 6.5 69 726-796 181-249 (252)
394 1e6c_A Shikimate kinase; phosp 85.8 0.42 1.4E-05 45.3 3.2 25 20-44 3-27 (173)
395 2yvu_A Probable adenylyl-sulfa 85.7 0.48 1.7E-05 45.7 3.6 25 18-42 12-36 (186)
396 3fvq_A Fe(3+) IONS import ATP- 85.7 0.37 1.3E-05 52.1 3.0 22 20-41 31-52 (359)
397 2plr_A DTMP kinase, probable t 85.7 0.48 1.7E-05 46.5 3.7 24 20-43 5-28 (213)
398 2pbr_A DTMP kinase, thymidylat 85.6 0.41 1.4E-05 46.2 3.1 21 21-41 2-22 (195)
399 3tui_C Methionine import ATP-b 85.6 0.36 1.2E-05 52.3 2.8 22 20-41 55-76 (366)
400 2vhj_A Ntpase P4, P4; non- hyd 85.5 0.7 2.4E-05 49.1 4.9 23 20-42 124-146 (331)
401 2pjz_A Hypothetical protein ST 85.5 0.4 1.4E-05 49.6 3.0 20 20-39 31-50 (263)
402 2bbs_A Cystic fibrosis transme 85.5 0.39 1.3E-05 50.4 3.0 21 20-40 65-85 (290)
403 1nn5_A Similar to deoxythymidy 85.4 0.48 1.6E-05 46.7 3.5 24 19-42 9-32 (215)
404 2cdn_A Adenylate kinase; phosp 85.4 0.55 1.9E-05 46.0 3.9 27 18-44 19-45 (201)
405 2iyv_A Shikimate kinase, SK; t 85.2 0.46 1.6E-05 45.7 3.2 25 20-44 3-27 (184)
406 2chg_A Replication factor C sm 85.1 5 0.00017 38.8 11.0 25 18-42 37-61 (226)
407 3umf_A Adenylate kinase; rossm 85.1 0.63 2.2E-05 46.6 4.2 29 17-45 27-55 (217)
408 2pt5_A Shikimate kinase, SK; a 84.9 0.53 1.8E-05 44.4 3.4 23 21-43 2-24 (168)
409 2ewv_A Twitching motility prot 84.9 0.46 1.6E-05 51.8 3.3 24 19-42 136-159 (372)
410 1e4v_A Adenylate kinase; trans 84.8 0.57 1.9E-05 46.5 3.8 24 21-44 2-25 (214)
411 1gtv_A TMK, thymidylate kinase 84.7 0.28 9.6E-06 48.5 1.4 22 21-42 2-23 (214)
412 1z47_A CYSA, putative ABC-tran 84.7 0.42 1.4E-05 51.7 2.9 22 20-41 42-63 (355)
413 1f2t_A RAD50 ABC-ATPase; DNA d 84.6 0.48 1.7E-05 44.3 2.9 22 21-42 25-46 (149)
414 1lw7_A Transcriptional regulat 84.6 0.42 1.4E-05 51.9 2.8 24 19-42 170-193 (365)
415 2yyz_A Sugar ABC transporter, 84.6 0.43 1.5E-05 51.7 2.9 22 20-41 30-51 (359)
416 2f6r_A COA synthase, bifunctio 84.6 0.57 2E-05 48.9 3.8 23 18-40 74-96 (281)
417 1sxj_A Activator 1 95 kDa subu 84.5 2.8 9.6E-05 47.7 9.8 25 19-43 77-101 (516)
418 2pez_A Bifunctional 3'-phospho 84.5 0.52 1.8E-05 45.2 3.2 24 19-42 5-28 (179)
419 1vht_A Dephospho-COA kinase; s 84.4 0.56 1.9E-05 46.6 3.5 22 20-41 5-26 (218)
420 3a4m_A L-seryl-tRNA(SEC) kinas 84.4 0.53 1.8E-05 48.5 3.3 24 19-42 4-27 (260)
421 2p5t_B PEZT; postsegregational 84.3 0.58 2E-05 47.9 3.6 27 17-43 30-56 (253)
422 2it1_A 362AA long hypothetical 84.2 0.45 1.5E-05 51.6 2.8 22 20-41 30-51 (362)
423 2b8t_A Thymidine kinase; deoxy 84.2 1.3 4.5E-05 44.5 6.1 41 123-163 89-129 (223)
424 3sr0_A Adenylate kinase; phosp 84.2 0.6 2.1E-05 46.3 3.5 25 21-45 2-26 (206)
425 2grj_A Dephospho-COA kinase; T 84.1 0.63 2.2E-05 45.6 3.6 26 17-42 10-35 (192)
426 1g29_1 MALK, maltose transport 84.0 0.47 1.6E-05 51.7 2.9 22 20-41 30-51 (372)
427 1ak2_A Adenylate kinase isoenz 84.0 0.66 2.2E-05 46.7 3.8 28 17-44 14-41 (233)
428 2w58_A DNAI, primosome compone 84.0 0.86 2.9E-05 44.5 4.6 23 20-42 55-77 (202)
429 2z0h_A DTMP kinase, thymidylat 83.9 0.5 1.7E-05 45.8 2.9 21 21-41 2-22 (197)
430 3rlf_A Maltose/maltodextrin im 83.9 0.47 1.6E-05 51.7 2.8 22 20-41 30-51 (381)
431 3nh6_A ATP-binding cassette SU 83.9 0.34 1.2E-05 51.3 1.6 22 20-41 81-102 (306)
432 1v43_A Sugar-binding transport 83.8 0.48 1.6E-05 51.6 2.8 22 20-41 38-59 (372)
433 1gvn_B Zeta; postsegregational 83.8 0.66 2.3E-05 48.6 3.9 26 18-43 32-57 (287)
434 3nwj_A ATSK2; P loop, shikimat 83.8 0.56 1.9E-05 48.1 3.2 25 19-43 48-72 (250)
435 1tue_A Replication protein E1; 83.8 0.7 2.4E-05 45.8 3.7 34 9-42 48-81 (212)
436 1d1n_A Initiation factor 2; be 83.8 2.3 7.9E-05 36.6 6.5 60 385-455 16-75 (99)
437 3bos_A Putative DNA replicatio 83.7 0.85 2.9E-05 45.4 4.5 25 18-42 51-75 (242)
438 2x8a_A Nuclear valosin-contain 83.6 0.64 2.2E-05 48.3 3.6 23 20-42 45-67 (274)
439 2p65_A Hypothetical protein PF 83.6 0.75 2.6E-05 43.7 3.9 26 17-42 41-66 (187)
440 1p9r_A General secretion pathw 83.4 0.59 2E-05 51.7 3.4 25 19-43 167-191 (418)
441 1t95_A Hypothetical protein AF 83.3 1.4 4.8E-05 44.3 5.7 68 728-797 168-235 (240)
442 3syl_A Protein CBBX; photosynt 83.1 2.4 8.1E-05 44.3 7.9 26 17-42 65-90 (309)
443 1ixz_A ATP-dependent metallopr 83.1 0.69 2.4E-05 47.1 3.6 23 20-42 50-72 (254)
444 3be4_A Adenylate kinase; malar 83.1 0.7 2.4E-05 46.0 3.5 26 19-44 5-30 (217)
445 2w0m_A SSO2452; RECA, SSPF, un 83.1 0.86 2.9E-05 45.2 4.2 36 7-42 10-46 (235)
446 1njg_A DNA polymerase III subu 82.9 1 3.5E-05 44.6 4.7 24 19-42 45-68 (250)
447 2vp4_A Deoxynucleoside kinase; 82.6 0.56 1.9E-05 47.2 2.6 24 18-41 19-42 (230)
448 3gd7_A Fusion complex of cysti 82.5 0.61 2.1E-05 51.1 3.0 22 20-41 48-69 (390)
449 3d31_A Sulfate/molybdate ABC t 82.2 0.41 1.4E-05 51.6 1.5 22 20-41 27-48 (348)
450 3hr8_A Protein RECA; alpha and 82.1 1.7 5.9E-05 46.9 6.3 25 18-42 60-84 (356)
451 2npi_A Protein CLP1; CLP1-PCF1 82.0 0.71 2.4E-05 51.8 3.4 24 19-42 138-161 (460)
452 2xb4_A Adenylate kinase; ATP-b 81.8 0.82 2.8E-05 45.7 3.5 24 21-44 2-25 (223)
453 3cmu_A Protein RECA, recombina 81.3 3.5 0.00012 54.0 9.7 35 9-43 1415-1451(2050)
454 1svm_A Large T antigen; AAA+ f 81.2 1.2 4.2E-05 48.5 4.8 26 17-42 167-192 (377)
455 1iy2_A ATP-dependent metallopr 81.1 0.91 3.1E-05 47.0 3.7 23 20-42 74-96 (278)
456 1m7g_A Adenylylsulfate kinase; 81.0 1 3.5E-05 44.4 3.9 26 17-42 23-48 (211)
457 3qf7_A RAD50; ABC-ATPase, ATPa 80.8 0.79 2.7E-05 49.8 3.2 22 21-42 25-46 (365)
458 3r20_A Cytidylate kinase; stru 80.8 0.96 3.3E-05 45.8 3.6 25 20-44 10-34 (233)
459 3u61_B DNA polymerase accessor 80.7 6.8 0.00023 41.1 10.5 24 19-42 47-71 (324)
460 1oxx_K GLCV, glucose, ABC tran 80.6 0.41 1.4E-05 51.7 0.8 22 20-41 32-53 (353)
461 3h4m_A Proteasome-activating n 80.3 1.3 4.3E-05 45.9 4.5 26 17-42 49-74 (285)
462 2cvh_A DNA repair and recombin 80.3 1.4 4.7E-05 43.4 4.5 35 7-41 7-42 (220)
463 1q3t_A Cytidylate kinase; nucl 80.3 1.1 3.8E-05 45.1 3.8 28 17-44 14-41 (236)
464 2obl_A ESCN; ATPase, hydrolase 79.9 1 3.4E-05 48.6 3.5 24 20-43 72-95 (347)
465 1in4_A RUVB, holliday junction 79.8 0.99 3.4E-05 48.2 3.5 25 19-43 51-75 (334)
466 3euj_A Chromosome partition pr 79.7 0.89 3E-05 51.2 3.2 23 20-42 30-52 (483)
467 3fkq_A NTRC-like two-domain pr 79.7 3.1 0.00011 45.1 7.5 35 97-133 259-293 (373)
468 1lv7_A FTSH; alpha/beta domain 79.7 1 3.6E-05 45.8 3.5 24 19-42 45-68 (257)
469 3ake_A Cytidylate kinase; CMP 79.6 1.1 3.7E-05 43.8 3.5 24 21-44 4-27 (208)
470 1cr0_A DNA primase/helicase; R 79.2 1.4 4.9E-05 45.9 4.4 34 9-42 25-58 (296)
471 1ihu_A Arsenical pump-driving 79.1 3.3 0.00011 47.9 7.9 40 124-163 200-240 (589)
472 3foz_A TRNA delta(2)-isopenten 78.8 1.4 4.9E-05 46.4 4.2 26 18-43 9-34 (316)
473 4eaq_A DTMP kinase, thymidylat 78.8 1.2 4.3E-05 44.7 3.7 26 18-43 25-50 (229)
474 2qby_A CDC6 homolog 1, cell di 78.7 1.6 5.4E-05 47.0 4.7 26 17-42 43-68 (386)
475 3cf0_A Transitional endoplasmi 78.3 1.6 5.4E-05 45.9 4.4 27 17-43 47-73 (301)
476 1xwi_A SKD1 protein; VPS4B, AA 78.1 5.1 0.00017 42.4 8.4 25 18-42 44-68 (322)
477 1n0w_A DNA repair protein RAD5 78.1 1.1 3.9E-05 44.8 3.2 36 7-42 11-47 (243)
478 2rcn_A Probable GTPase ENGC; Y 78.0 2.3 7.8E-05 45.9 5.6 44 118-163 127-173 (358)
479 3pvs_A Replication-associated 77.9 7.6 0.00026 43.2 10.1 26 18-43 49-74 (447)
480 1ltq_A Polynucleotide kinase; 77.4 1.2 4.1E-05 46.5 3.2 22 20-41 3-24 (301)
481 1a7j_A Phosphoribulokinase; tr 77.2 0.78 2.7E-05 48.1 1.6 24 19-42 5-28 (290)
482 3io5_A Recombination and repai 77.2 9.9 0.00034 40.2 10.0 22 21-42 30-51 (333)
483 2dpy_A FLII, flagellum-specifi 77.1 1.3 4.5E-05 49.3 3.5 25 19-43 157-181 (438)
484 1sxj_E Activator 1 40 kDa subu 77.0 1.5 5.1E-05 46.9 3.9 25 17-41 34-58 (354)
485 3qks_A DNA double-strand break 76.9 1.3 4.5E-05 43.6 3.2 24 21-44 25-48 (203)
486 2kdo_A Ribosome maturation pro 76.6 0.7 2.4E-05 46.9 1.0 68 727-797 171-238 (252)
487 3d3q_A TRNA delta(2)-isopenten 76.5 1.7 5.7E-05 46.6 4.0 25 20-44 8-32 (340)
488 1yqt_A RNAse L inhibitor; ATP- 76.5 1.2 4.1E-05 51.1 3.0 22 20-41 48-69 (538)
489 1l8q_A Chromosomal replication 76.5 1.7 6E-05 45.9 4.2 33 10-42 27-60 (324)
490 3crm_A TRNA delta(2)-isopenten 76.4 1.6 5.6E-05 46.3 3.8 25 20-44 6-30 (323)
491 1qvr_A CLPB protein; coiled co 76.3 13 0.00043 45.1 12.2 24 19-42 588-611 (854)
492 1nlf_A Regulatory protein REPA 76.1 1.5 5.2E-05 45.3 3.5 22 20-41 31-52 (279)
493 3ez9_A Para; DNA binding, wing 76.1 3.3 0.00011 45.3 6.5 65 96-162 246-322 (403)
494 3b5x_A Lipid A export ATP-bind 76.1 1.2 4.1E-05 51.6 2.9 22 20-41 370-391 (582)
495 1p5z_B DCK, deoxycytidine kina 75.8 0.95 3.2E-05 46.5 1.8 23 18-40 23-45 (263)
496 3b60_A Lipid A export ATP-bind 75.8 1.3 4.5E-05 51.2 3.2 22 20-41 370-391 (582)
497 2ga8_A Hypothetical 39.9 kDa p 75.7 1.8 6.2E-05 46.5 4.0 27 17-43 22-48 (359)
498 3cr8_A Sulfate adenylyltranfer 75.5 1.8 6.2E-05 49.6 4.2 24 19-42 369-392 (552)
499 2afh_E Nitrogenase iron protei 75.4 4.3 0.00015 42.0 6.8 67 96-162 117-189 (289)
500 2ocp_A DGK, deoxyguanosine kin 75.3 1.7 5.7E-05 43.9 3.5 24 20-43 3-26 (241)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=1.7e-152 Score=1387.12 Aligned_cols=829 Identities=63% Similarity=1.046 Sum_probs=740.6
Q ss_pred CcccCHHHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEee
Q 003305 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
|..|+.+++.++|...+++|||+|+||+|||||||+++|++.++.+.....|.++++|+.++|++||+|+.++.+++.|.
T Consensus 1 ~~~~~~~~~~~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~ 80 (842)
T 1n0u_A 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80 (842)
T ss_dssp --CBCHHHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEE
T ss_pred CcccCHHHHHHHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEec
Confidence 78899999999999888999999999999999999999999999887755666788999999999999999999988885
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECC
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKi 160 (832)
........+....+++++.++|||||||.||..++.++++.+|+||+|+|+++|++.|+..+|+++...++|+++|+||+
T Consensus 81 ~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~ 160 (842)
T 1n0u_A 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKV 160 (842)
T ss_dssp CCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred ccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 21111111111224457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHH
Q 003305 161 DRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (832)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (832)
|+...+++.++++++..+++++++++..+..+.+...+++.+.|..++++|+|+.+||+|++.+|+..|+++|+++...+
T Consensus 161 D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l 240 (842)
T 1n0u_A 161 DRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKM 240 (842)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHH
T ss_pred CcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHH
Confidence 99877788999999999999999999988766544445566789999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCcCCCceEecC--CCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHH
Q 003305 241 MERLWGENFFDPATKKWTTKN--TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALM 318 (832)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~ 318 (832)
.+++||+.||++++++|...+ +.....++.|++++++|+|+|++++++.|++++++||+++|++++.+|+....+.|+
T Consensus 241 ~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~ 320 (842)
T 1n0u_A 241 MDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALL 320 (842)
T ss_dssp HHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHH
T ss_pred HHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHH
Confidence 999999999988777777643 211245789999999999999999999999999999999999999999887889999
Q ss_pred HHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003305 319 KRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (832)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV 398 (832)
++++++|+|++++|||+|++|+|||.+++.++...+|.|+.+++....++.||+++||+|+|||+..+++.|++++|+||
T Consensus 321 ~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV 400 (842)
T 1n0u_A 321 KVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_dssp HHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEE
T ss_pred HHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEE
Confidence 99999999999999999999999999998888887777654433334566799999999999999999999977999999
Q ss_pred eeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccceeeecCCCCCcccc
Q 003305 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPI 478 (832)
Q Consensus 399 ~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tgTl~~~~~~~~~~~ 478 (832)
|||+|++|+.|+++++++++++.+++..+||++||+++|+++++|++|.|||||+|.||+++.++|||||+.. .+.++
T Consensus 401 ~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~--~~~~l 478 (842)
T 1n0u_A 401 FAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSE--TAHNM 478 (842)
T ss_dssp EESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCT--TCCCB
T ss_pred EeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCC--Ccccc
Confidence 9999999999999988877665443445899999999999999999999999999999999888889999876 67788
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEc
Q 003305 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (832)
Q Consensus 479 ~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s 558 (832)
+++.++.+|+++++|+|+++.|++||.+||++|.+|||+|++.++||||++|+||||||||||++||+++|+ |+++.++
T Consensus 479 ~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~-~vev~~~ 557 (842)
T 1n0u_A 479 KVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHA-GVPLKIS 557 (842)
T ss_dssp CCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTS-CSCEEEE
T ss_pred ccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhc-CCceEec
Confidence 899887579999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEec
Q 003305 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (832)
Q Consensus 559 ~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (832)
+|+|+|||||+++++..++.+++++|+++++++|||++++...++.|.+...++.+.+.+.|..+|+||..+++++|+||
T Consensus 558 ~P~V~yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~ 637 (842)
T 1n0u_A 558 PPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFG 637 (842)
T ss_dssp CCCCCCEEEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEES
T ss_pred CcEEEEEEeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeec
Confidence 99999999999999888888999999999999999999999999999887777888888999999999999999999999
Q ss_pred cCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHH
Q 003305 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718 (832)
Q Consensus 639 P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 718 (832)
|+..|+|+|+|.++|++++++++++|++||+||+++|||||+||+||+|+|+|+++|.|+++++++||++|+++||++|+
T Consensus 638 p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~ 717 (842)
T 1n0u_A 638 PDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGF 717 (842)
T ss_dssp STTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHH
Confidence 98778999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeE
Q 003305 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798 (832)
Q Consensus 719 ~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 798 (832)
++|+|+||||||+|+|+||++++|+||+||++|||+|+++++.+|+++++|+|++|++|||||+++|||+|+|+|+|+|+
T Consensus 718 ~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~ 797 (842)
T 1n0u_A 718 LLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMV 797 (842)
T ss_dssp HHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEE
T ss_pred HhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEE
Confidence 99999999999999999999999999999999999999999877767899999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchHHHHHHHHHHHhcCCCCC
Q 003305 799 FDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKDK 832 (832)
Q Consensus 799 f~~y~~~~~~~~~~~~~a~~~~~~~r~rkGl~~~ 832 (832)
|+||++||+||++++|+|++|++++||||||+++
T Consensus 798 F~~y~~vp~~~~~~~~~a~~~~~~~R~rKGl~~~ 831 (842)
T 1n0u_A 798 FDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEE 831 (842)
T ss_dssp EEEEEECCSCTTCTTSHHHHHHHHHHHHTTCCSS
T ss_pred eccceeCCCCccchhhHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999864
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.9e-122 Score=1107.32 Aligned_cols=670 Identities=28% Similarity=0.394 Sum_probs=527.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
++||||||+||+|||||||+++||+.+|.+.+. ..+..+++|++++|++|||||+++.+++.|.. ...+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~---------~~~~ 81 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKG---------SRGQ 81 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECC---------TTSC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEecc---------CcCC
Confidence 689999999999999999999999999988762 11225799999999999999999999999962 1123
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHH
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~ 174 (832)
.+++.|||||||||.||..|+.++|+++||||+||||++|+++||+.+|++|.++++|+++|||||||. .+++..
T Consensus 82 ~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~----~a~~~~- 156 (709)
T 4fn5_A 82 YDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ----GANFLR- 156 (709)
T ss_dssp SCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST----TCCHHH-
T ss_pred CCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc----CccHHH-
Confidence 457999999999999999999999999999999999999999999999999999999999999999999 887444
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCc
Q 003305 175 YQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (832)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~ 252 (832)
.+++++..+.. .+...++|++++ +.|+ +|+.++..++|++...
T Consensus 157 ------~~~ei~~~l~~-----------~~~~~~~pi~~~~~~~g~----------------vd~~~~~~~~~~~~~~-- 201 (709)
T 4fn5_A 157 ------VVEQIKKRLGH-----------TPVPVQLAIGAEENFVGQ----------------VDLIKMKAIYWNDDDK-- 201 (709)
T ss_dssp ------HHHHHHHHHCS-----------CEEESEEEESSSTTCCEE----------------EETTTTEEEEEEC--C--
T ss_pred ------HHHHhhhhccc-----------ceeeeecccCchhccceE----------------EEEeeeeEEEeecccC--
Confidence 44444444421 233446666654 4444 3344444566754321
Q ss_pred CCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc---
Q 003305 253 ATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA--- 328 (832)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 328 (832)
...+... .....+.+..-..+..+++.+++.|++++++|+++ .+++.+++. ..+.+++. .+++|+
T Consensus 202 -g~~~~~~-----~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~--~~~~~~~~~---~~l~~~~~~~~~~pv~~g 270 (709)
T 4fn5_A 202 -GMTYREE-----EIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEE--GELSEAEIK---EGLRLRTLACEIVPAVCG 270 (709)
T ss_dssp -CCEEEEC-----CCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH--SCCCHHHHH---HHHHHHHHTTSCEEEEEC
T ss_pred -Cceeccc-----cccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCccHHHHH---HHHHHhhhhceeeeeeee
Confidence 1123222 12233333444455688999999999999999998 677777775 45666554 578885
Q ss_pred -------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeee
Q 003305 329 -------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 401 (832)
Q Consensus 329 -------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG 401 (832)
++.|||+|++++|+|.+++..+... .+++.....+.||+++|++++|||+..+++.|. ++|+|||||
T Consensus 271 sa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~-----~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~-la~~RV~sG 344 (709)
T 4fn5_A 271 SSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVS-----PDDETVEDERHADDNEPFSSLAFKIATDPFVGT-LTFARVYSG 344 (709)
T ss_dssp BTTTTBTHHHHHHHHHHHSCCTTSSCCEECBC-----CC-CCSCCEECSCTTSCCEEEEEECCCBTTTBC-CCEEEEEES
T ss_pred ecccCCchHHHHHHHHhhCCCCcccccccccC-----CccccccccccCCccCcceEEEEEeecccCCCc-eEEEeccCC
Confidence 7889999999999998876654332 123334567789999999999999999999887 999999999
Q ss_pred eeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccccc
Q 003305 402 KVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRA 480 (832)
Q Consensus 402 ~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~ 480 (832)
+|++||.|++ .+++++ ++++++|.++|+++++|++|+|||||+|.|++++ .+| |||+.. .+..+++
T Consensus 345 tl~~G~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~--~~gdTl~~~~--~~~~~~~ 411 (709)
T 4fn5_A 345 VLSSGDSVLN----SVKGKK-----ERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV--TTGDTLCSIE--KPIILER 411 (709)
T ss_dssp CEETTCBCBC----TTTCCC-----CBCCCEECCCSSCCCEESEECTTCEEEECSCSSC--CTTCEEECSS--SCCBCC-
T ss_pred CCCCCCEEEE----ecCCcE-----EeecceeEeecceeeEeeeecCCCeeeecCCCcC--ccCCEecCCC--ccccCCC
Confidence 9999999994 444444 7999999999999999999999999999999987 566 999877 6677888
Q ss_pred cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcC
Q 003305 481 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSD 559 (832)
Q Consensus 481 ~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~ 559 (832)
+.++ +|+++++|+|.+++|++||.+||++|.+|||+|+++.+ +|||++|+||||||||||++||+++| |+++++|+
T Consensus 412 ~~~~-~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~--gvev~vs~ 488 (709)
T 4fn5_A 412 MDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEANIGK 488 (709)
T ss_dssp ---C-CCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT--CCCBCCBC
T ss_pred CCCC-CcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh--CceEEEee
Confidence 8886 99999999999999999999999999999999999986 99999999999999999999999999 99999999
Q ss_pred cEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcC--CchhccCeEEEe
Q 003305 560 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFG--WDKDLAKKIWCF 637 (832)
Q Consensus 560 p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~--~~~~~~~~i~~~ 637 (832)
|+|+|||||++.+. +..++|++ ++|+. +||+ |.......+|.+
T Consensus 489 P~V~yrETi~~~~~-----~~~~~~~k----------------~~~~~--------------~~~~~~~~~~~~~~~~e~ 533 (709)
T 4fn5_A 489 PQVAYRETITKDNV-----EIEGKFVR----------------QSGGR--------------GQFGHCWIRFSAADVDEK 533 (709)
T ss_dssp CCCCCEEECCCCSE-----EEEEEEEE----------------EETTE--------------EEEEEEEEEEECCCBC-C
T ss_pred ceEEEEEEEecCCc-----eecceeee----------------ccCCc--------------CcceeEEEEEeecccccc
Confidence 99999999987542 22233333 23221 3333 111112223333
Q ss_pred ccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHHHH
Q 003305 638 GPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYA 716 (832)
Q Consensus 638 ~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~ 716 (832)
||. ..++.|.|++.|+.++++++++|++||+||+++|||||+||+||+|+|.|+++|. |+... .+..|+++||++
T Consensus 534 g~~-~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~---~f~~a~~~a~~~ 609 (709)
T 4fn5_A 534 GNI-TEGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEM---AFKIAASMATKQ 609 (709)
T ss_dssp CCB-CCEEEEEECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHH---HHHHHHHHHHHT
T ss_pred CCC-cCceEEecccccccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChH---HHHHHHHHHHHH
Confidence 433 2358999999999999999999999999999999999999999999999999997 44333 345699999999
Q ss_pred HHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeee
Q 003305 717 SQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (832)
Q Consensus 717 al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (832)
|+++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++ ..+|+|++|++|||||+++|||+|+|+|+|+
T Consensus 610 a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~~--~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~ 687 (709)
T 4fn5_A 610 LAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVS--GKVIRAEVPLGEMFGYATDVRSMSQGRASYS 687 (709)
T ss_dssp HHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEECSS--EEEEEEEEESGGGTTHHHHHHHHTTTCCEEE
T ss_pred HHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEecCC--CEEEEEEecHHHhhCHHHHHHhhCCCeEEEE
Confidence 99999999999999999999999999999999999999999987764 6789999999999999999999999999999
Q ss_pred eEecceeecCCCC
Q 003305 797 CVFDHWDMMSSDP 809 (832)
Q Consensus 797 ~~f~~y~~~~~~~ 809 (832)
|+|+||++||+|+
T Consensus 688 ~~F~~y~~vp~~~ 700 (709)
T 4fn5_A 688 MEFSKYAEAPSNI 700 (709)
T ss_dssp CCEEEEEECCHHH
T ss_pred EEECCcccCCcCH
Confidence 9999999999996
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=8e-114 Score=1029.11 Aligned_cols=672 Identities=28% Similarity=0.372 Sum_probs=562.4
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc---cCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (832)
..+++|||+|+||+|||||||+++|++.+|.+.+. ..| .+++|+.+.|++||+|+.....++.|...
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~--------- 75 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG-AATMDWMEQEQERGITITSAATTAFWSGM--------- 75 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCC-ceeecChhhHHhcCceeeeceEEEEECCc---------
Confidence 45678999999999999999999999988877652 112 47899999999999999999988888610
Q ss_pred cCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCH
Q 003305 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~ 171 (832)
..+++.+.++|||||||.||..++.++++.+|+||+|||+++|++.||+.+|+++...++|+++|+||+|+. .+++
T Consensus 76 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~----~~~~ 151 (704)
T 2rdo_7 76 AKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM----GANF 151 (704)
T ss_pred cccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc----cccH
Confidence 012345899999999999999999999999999999999999999999999999999999999999999998 7764
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceeccc--CccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003305 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (832)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (832)
+++.+.+ +..+.. .+...++|++. .+.|+ +|+..+..++|.+.
T Consensus 152 ~~~~~~l-------~~~l~~-----------~~~~~~~Pi~~~~~f~g~----------------~dl~~~~~~~~~~~- 196 (704)
T 2rdo_7 152 LKVVNQI-------KTRLGA-----------NPVPLQLAIGAEEHFTGV----------------VDLVKMKAINWNDA- 196 (704)
T ss_pred HHHHHHH-------HHHhCC-----------CceeEEccccccccccce----------------eehhhhhhhcccCc-
Confidence 4444433 333321 01122445543 23333 67777778888421
Q ss_pred cCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc
Q 003305 250 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA 328 (832)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (832)
..+.++... .....+.+++.+++++|++++++.|++++++||++ ++++.+++. +.++++++ ++|+|+
T Consensus 197 --~~g~~~~~~-----~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~--~~l~~~~l~---~~l~~~~~~~~~~Pv 264 (704)
T 2rdo_7 197 --DQGVTFEYE-----DIPADMVELANEWHQNLIESAAEASEELMEKYLGG--EELTEAEIK---GALRQRVLNNEIILV 264 (704)
T ss_pred --cCCcceEEe-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeEE
Confidence 002223322 23445778889999999999999999999999996 789998886 66777776 689997
Q ss_pred ----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003305 329 ----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (832)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV 398 (832)
++.|||+|++++|+|.+++.++. +. +.++. ....+.|++++||+|+|||++.+++.|+ ++|+||
T Consensus 265 ~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~-~~~~~-~~~~~~~~~~~p~~~~VfK~~~d~~~G~-~~~~RV 338 (704)
T 2rdo_7 265 TCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING---IL-DDGKD-TPAERHASDDEPFSALAFKIATDPFVGN-LTFFRV 338 (704)
T ss_pred EEeecccCccHHHHHHHHHHHCCChhhcccccc---cC-Ccccc-cccccccCCCCceEEEEEEEEEcCCCce-EEEEEE
Confidence 68999999999999988765443 11 11111 1245678899999999999999999988 999999
Q ss_pred eeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccc
Q 003305 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHP 477 (832)
Q Consensus 399 ~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~ 477 (832)
|||+|++||.|++. +.+++ ++|++|+.++|+++++|++|.|||||+|.|++++ .+| |||+.. .+.+
T Consensus 339 ~sG~l~~g~~v~~~----~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~--~~GdTl~~~~--~~~~ 405 (704)
T 2rdo_7 339 YSGVVNSGDTVLNS----VKAAR-----ERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV--TTGDTLCDPD--APII 405 (704)
T ss_pred EeeeecCCCEEEeC----CCCcE-----EEeceEEEEeCCCceEcceeCCCCEEEEeCcccC--ccCCEEeCCC--cccc
Confidence 99999999999953 33333 7999999999999999999999999999999987 677 999876 6678
Q ss_pred ccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEE
Q 003305 478 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEII 556 (832)
Q Consensus 478 ~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~ 556 (832)
++++.++ .|+++++|+|+++.|++||.+||++|.+|||+|++.++ +|||++|+|||||||||+++||+++| |+++.
T Consensus 406 l~~~~~~-~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f--~v~v~ 482 (704)
T 2rdo_7 406 LERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF--NVEAN 482 (704)
T ss_pred cCCCCCC-CceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEE
Confidence 8999986 89999999999999999999999999999999999997 89999999999999999999999999 99999
Q ss_pred EcCcEEeEeeeccccc-cceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEE
Q 003305 557 KSDPVVSFRETVLEKS-CRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW 635 (832)
Q Consensus 557 ~s~p~V~yrEti~~~~-~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 635 (832)
+++|+|+|||||.+++ +.. ++|++ |+|+. +||+. +|
T Consensus 483 ~~~p~V~yrEti~~~~~~~~------~~~~k----------------q~gg~--------------~q~~~-------v~ 519 (704)
T 2rdo_7 483 VGKPQVAYRETIRQKVTDVE------GKHAK----------------QSGGR--------------GQYGH-------VV 519 (704)
T ss_pred EeCCEEEEEEeeccccccce------eeecc----------------ccCCC--------------CeeEE-------EE
Confidence 9999999999998776 433 23333 33332 33332 33
Q ss_pred E-eccC---C-CCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHH
Q 003305 636 C-FGPE---T-TGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPT 709 (832)
Q Consensus 636 ~-~~P~---~-~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a 709 (832)
. ++|. + +.+|.|.|.+.|+.++++++++|++||+||+++|||||+||+||+|+|+|+++|. ||++. +|+.|
T Consensus 520 ~~~ePl~~~~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~---~f~~a 596 (704)
T 2rdo_7 520 IDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSEL---AFKLA 596 (704)
T ss_pred EEEEECCCCCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHH---HHHHH
Confidence 2 4443 2 2358999999999999999999999999999999999999999999999999997 56543 57899
Q ss_pred HHHHHHHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhC
Q 003305 710 ARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAAT 789 (832)
Q Consensus 710 ~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T 789 (832)
+++||++|+++|+|+||||||+++|+||++++|+||++|++|||+|++++..+| +++|+|++|++|||||+++|||+|
T Consensus 597 ~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T 674 (704)
T 2rdo_7 597 ASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVT--GVKIHAEVPLSEMFGYATQLRSLT 674 (704)
T ss_pred HHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCceecCC--eEEEEEEecHHHHhhHHHHhHhhc
Confidence 999999999999999999999999999999999999999999999999998764 799999999999999999999999
Q ss_pred CCceeeeeEecceeecCCCCCCCchHHHHHHHHH
Q 003305 790 SGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADI 823 (832)
Q Consensus 790 ~G~~~~~~~f~~y~~~~~~~~~~~~~a~~~~~~~ 823 (832)
+|+|+|+|+|+||+++|+++ +++++++.
T Consensus 675 ~G~~~~~~~f~~y~~~~~~~------~~~i~~~~ 702 (704)
T 2rdo_7 675 KGRASYTMEFLKYDEAPSNV------AQAVIEAR 702 (704)
T ss_pred CCceEEEEEeCcceECCccH------HHHHHHHh
Confidence 99999999999999999997 89998763
No 4
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.5e-112 Score=1014.44 Aligned_cols=663 Identities=26% Similarity=0.374 Sum_probs=537.4
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc--CCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
.+++|||+|+||+|+|||||+++|++.++.+.+.. ....+++|+.+.|+++|+|+......+.|.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~------------- 73 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE------------- 73 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET-------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC-------------
Confidence 46789999999999999999999999887765410 012468999999999999999999888886
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHH
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (832)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.++..+|+++...++|+++|+||+|+. ..+..+
T Consensus 74 ---~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~----~~~~~~ 146 (693)
T 2xex_A 74 ---GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL----GANFEY 146 (693)
T ss_dssp ---TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCCHHH
T ss_pred ---CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcc----ccchHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999998 766444
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecc--cCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccC
Q 003305 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (832)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (832)
+.+. ++..+.. .+....+|++ .++.|+.. ......+.| +
T Consensus 147 ~~~~-------l~~~l~~-----------~~~~~~ipisa~~~~~~l~d----------------~l~~~~~~~-----~ 187 (693)
T 2xex_A 147 SVST-------LHDRLQA-----------NAAPIQLPIGAEDEFEAIID----------------LVEMKCFKY-----T 187 (693)
T ss_dssp HHHH-------HHHHHCC-----------CEEESEEEECCGGGCCEEEE----------------TTTTEEEEC-----C
T ss_pred HHHH-------HHHHhCC-----------CceeEEeecccCCCcceeee----------------eecceeEEe-----c
Confidence 4333 3333321 0111233443 33444422 211112233 2
Q ss_pred -cCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc-
Q 003305 252 -PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA- 328 (832)
Q Consensus 252 -~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~- 328 (832)
..+..+... +....|.+.....+.+|++.+++.|++++++||++ .+++.+++. +.+++++. .+++|+
T Consensus 188 ~~~~~~~~~~-----~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~--~~~~~~~~~---~~l~~~~~~~~~~Pv~ 257 (693)
T 2xex_A 188 NDLGTEIEEI-----EIPEDHLDRAEEARASLIEAVAETSDELMEKYLGD--EEISVSELK---EAIRQATTNVEFYPVL 257 (693)
T ss_dssp SSSSCSCEEE-----CCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTT--CCCCHHHHH---HHHHHHHHTTSCEEEE
T ss_pred cCCCceeEEe-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeeEE
Confidence 111112221 22345666777788999999999999999999996 788888876 56777666 578896
Q ss_pred ---------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeee
Q 003305 329 ---------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVF 399 (832)
Q Consensus 329 ---------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~ 399 (832)
++.|||+|++++|+|.+++.++.. . +.++. ...++.||+++||+|+|||++.+++.|+ ++|+|||
T Consensus 258 ~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~---~-~~~~~-~~~~~~~~~~~p~~a~VfK~~~d~~~g~-~~~~RV~ 331 (693)
T 2xex_A 258 CGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGH---R-ASNPE-EEVIAKADDSAEFAALAFKVMTDPYVGK-LTFFRVY 331 (693)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEE---E-TTEEE-EEEEECSCTTSCCEEEEEEEEEETTTEE-EEEEEEE
T ss_pred EeecccCcCHHHHHHHHHHHCCCchhccccccc---C-CCccc-cceeecCCCCCceEEEEEEeeecCCCce-EEEEEEE
Confidence 689999999999999887654431 1 11111 2356789999999999999999999888 9999999
Q ss_pred eeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCcccc
Q 003305 400 SGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPI 478 (832)
Q Consensus 400 sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~ 478 (832)
||+|++||.|++. +.++ .++|++|+.++|+++++|++|.|||||+|.|++++ .+| |||+.. .+.++
T Consensus 332 sG~l~~g~~v~~~----~~~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdTl~~~~--~~~~~ 398 (693)
T 2xex_A 332 SGTMTSGSYVKNS----TKGK-----RERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT--GTGDTLCGEK--NDIIL 398 (693)
T ss_dssp ESEEETTEEEEET----TTTE-----EEEECCEEEECSSCEEECSEEETTCEEEEESCSSC--CTTCEEEETT--CCEEC
T ss_pred eeeEecCCEEEec----CCCc-----eEEeceEEEEeCCCceEccccCcCCEEEEeCcccC--ccCCEEecCC--Ccccc
Confidence 9999999999953 3333 38999999999999999999999999999999997 667 999877 66788
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEE
Q 003305 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIK 557 (832)
Q Consensus 479 ~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~ 557 (832)
++++++ .|+++++|+|++++|++||.+||++|.+|||+|++.++ +|||++|+|||||||||+++||+++| |+++.+
T Consensus 399 ~~~~~~-~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~--~v~v~~ 475 (693)
T 2xex_A 399 ESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNV 475 (693)
T ss_dssp CCCSSC-SCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHS--CCCEEE
T ss_pred CCcCCC-CceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEEE
Confidence 999987 89999999999999999999999999999999999997 89999999999999999999999999 999999
Q ss_pred cCcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEE-
Q 003305 558 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC- 636 (832)
Q Consensus 558 s~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~- 636 (832)
++|+|+|||||.++++. .++|++ |+|+. +||+. +|.
T Consensus 476 ~~p~V~yrEti~~~~~~------~~~~~k----------------q~gg~--------------~~~~~-------v~~~ 512 (693)
T 2xex_A 476 GAPMVSYRETFKSSAQV------QGKFSR----------------QSGGR--------------GQYGD-------VHIE 512 (693)
T ss_dssp CCCEECCEEEESSCEEE------EEEEEE----------------CTTSS--------------CEEEE-------EEEE
T ss_pred eCCeEEEEEEeccccce------eEeecc----------------ccCCC--------------CceEE-------EEEE
Confidence 99999999999987643 345554 55553 45553 553
Q ss_pred eccCCCC-CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHH
Q 003305 637 FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVI 714 (832)
Q Consensus 637 ~~P~~~g-~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~ 714 (832)
++|.+.| +|.|.|.+.|+.++++|+++|++||+||+++|||||+||+||+|+|+|+++|. ||++. +|+.|+++||
T Consensus 513 ~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~~a~ 589 (693)
T 2xex_A 513 FTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEM---AFKIAASLAL 589 (693)
T ss_dssp EEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHH---HHHHHHHHHH
T ss_pred EEECCCCCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHH---HHHHHHHHHH
Confidence 6664433 68999999999999999999999999999999999999999999999999997 66654 5789999999
Q ss_pred HHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCcee
Q 003305 715 YASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAF 794 (832)
Q Consensus 715 ~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~ 794 (832)
++|+++|+|+||||||+++|+||++++|+||++|++|||+|++++..+| +++|+|++|++|||||+++|||+|+|+|+
T Consensus 590 ~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~ 667 (693)
T 2xex_A 590 KEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGN--AQVVNAYVPLSEMFGYATSLRSNTQGRGT 667 (693)
T ss_dssp HHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETT--EEEEEEEEEGGGCTTHHHHHHHHTTTCCE
T ss_pred HHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCC--eEEEEEEeCHHHHHhHHHHhHHhcCCceE
Confidence 9999999999999999999999999999999999999999999998774 79999999999999999999999999999
Q ss_pred eeeEecceeecCCCCCCCchHHHHHHHHH
Q 003305 795 PQCVFDHWDMMSSDPLEPGTQAAQLVADI 823 (832)
Q Consensus 795 ~~~~f~~y~~~~~~~~~~~~~a~~~~~~~ 823 (832)
|+|+|+||+++|+++ +++++++.
T Consensus 668 ~~~~f~~y~~~~~~~------~~~i~~~~ 690 (693)
T 2xex_A 668 YTMYFDHYAEVPKSI------AEDIIKKN 690 (693)
T ss_dssp EEEEEEEEEECCHHH------HHHHHHHH
T ss_pred EEEEeCcceECChhH------HHHHHHHh
Confidence 999999999999986 99998874
No 5
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=2.9e-112 Score=1014.79 Aligned_cols=660 Identities=27% Similarity=0.394 Sum_probs=494.6
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc--CCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCc
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (832)
..+++|||+|+||+|||||||+++|++.++.+.+.. ....+++|+.+.|+++|+|+......+.|.
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~------------ 75 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------------ 75 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET------------
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC------------
Confidence 346799999999999999999999999887765420 112468999999999999999999888885
Q ss_pred CCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHH
Q 003305 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (832)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 172 (832)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.++..+|+++...++|+++|+||+|+. .+++.
T Consensus 76 ----~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~~~~~ 147 (691)
T 1dar_A 76 ----DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT----GADLW 147 (691)
T ss_dssp ----TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCCHH
T ss_pred ----CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc----cCCHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999998 77644
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceec--ccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCccc
Q 003305 173 EAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAF--SAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 250 (832)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~--~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~ 250 (832)
+ .+++++..+.. .+...++|+ ++++.||...+..+ .+.|
T Consensus 148 ~-------~~~~l~~~l~~-----------~~~~~~~Pi~~~~~~~g~~d~~~~~----------------~~~~----- 188 (691)
T 1dar_A 148 L-------VIRTMQERLGA-----------RPVVMQLPIGREDTFSGIIDVLRMK----------------AYTY----- 188 (691)
T ss_dssp H-------HHHHHHHTTCC-----------CEEECEEEESCGGGCCEEEETTTTE----------------EEEE-----
T ss_pred H-------HHHHHHHHhCC-----------CccceeccccCCCcccchhhhhcce----------------eeEe-----
Confidence 3 33444443321 111223333 45577885544321 2222
Q ss_pred C-cCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc
Q 003305 251 D-PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA 328 (832)
Q Consensus 251 ~-~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (832)
+ ..+..+... .....|.+++.+.+.+|++.+++.|++++++||++ .+++.+++. ..+++++. ++++|+
T Consensus 189 ~~~~g~~~~~~-----~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~--~~~~~~~~~---~~~~~~~~~~~~~Pv 258 (691)
T 1dar_A 189 GNDLGTDIREI-----PIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEG--EEPTEEELV---AAIRKGTIDLKITPV 258 (691)
T ss_dssp CSTTSCCEEEE-----CCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred ccCCCceeEEe-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCcEeEE
Confidence 2 111112221 23445777788889999999999999999999996 788888886 55666665 578887
Q ss_pred ----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003305 329 ----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (832)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV 398 (832)
++.|||+|++++|+|.+++.++... + ++ ....+.|++++|++|+|||+..+++.|+ ++|+||
T Consensus 259 ~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~----~-~~--~~~~~~~~~~~p~~~~Vfk~~~d~~~G~-~~~~RV 330 (691)
T 1dar_A 259 FLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTT----P-EG--EVVEIHPDPNGPLAALAFKIMADPYVGR-LTFIRV 330 (691)
T ss_dssp EECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEEC----S-SS--CEEEECCCTTSCCEEEEEEEEEETTTEE-EEEEEE
T ss_pred EEeecccCcCHHHHHHHHHHhCCChhhcccccccC----C-Cc--cccccccCCCCCcEEEEEEEEEcCCCCc-EEEEEE
Confidence 6899999999999998876544321 1 11 1346788999999999999999999888 999999
Q ss_pred eeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCc-c
Q 003305 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDA-H 476 (832)
Q Consensus 399 ~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~-~ 476 (832)
|||+|++||.|++. +.++ .++|++|+.++|+++++|++|.|||||+|.|++++ .+| |||+.. .+ .
T Consensus 331 ~sG~l~~g~~v~~~----~~~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~--~~~~ 397 (691)
T 1dar_A 331 YSGTLTSGSYVYNT----TKGR-----KERVARLLRMHANHREEVEELKAGDLGAVVGLKET--ITGDTLVGED--APRV 397 (691)
T ss_dssp EESEEESSCEEEET----TTTE-----EEECCEEEEECSSCEEEESEEETTCEEEEECCSSC--CTTCEEEETT--CCCC
T ss_pred eeeeEecCCEEEec----CCCc-----EEEEceEEEEeCCCceEcceecCCCEEEEeCcccC--ccCCEEecCC--Cccc
Confidence 99999999999953 3333 37999999999999999999999999999999987 567 999877 55 7
Q ss_pred cccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeE
Q 003305 477 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEI 555 (832)
Q Consensus 477 ~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v 555 (832)
+++++.++ .|+++++|+|+++.|++||.+||++|.+|||+|++.++ +|||++|+|||||||||+++||+++| |+++
T Consensus 398 ~l~~~~~~-~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~--~v~v 474 (691)
T 1dar_A 398 ILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF--KVDA 474 (691)
T ss_dssp BCC---------------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCE--EEBT
T ss_pred ccCCCCCC-CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhh--CceE
Confidence 88899887 89999999999999999999999999999999999997 89999999999999999999999999 9999
Q ss_pred EEcCcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEE
Q 003305 556 IKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW 635 (832)
Q Consensus 556 ~~s~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 635 (832)
.+++|+|+|||||.++++. .++|++ |+|+. +||+. +|
T Consensus 475 ~~~~p~V~yrEti~~~~~~------~~~~~k----------------q~gg~--------------~~~~~-------v~ 511 (691)
T 1dar_A 475 NVGKPQVAYRETITKPVDV------EGKFIR----------------QTGGR--------------GQYGH-------VK 511 (691)
T ss_dssp TTBCCCBCCEEECSSCEEE------EEEEEE----------------CCSSS--------------CEEEE-------EE
T ss_pred EEeCCeEEEEEeeccceee------eeeecc----------------ccCCC--------------CceEE-------EE
Confidence 9999999999999987643 344554 55553 45553 55
Q ss_pred E-eccCCCC-CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHH
Q 003305 636 C-FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARR 712 (832)
Q Consensus 636 ~-~~P~~~g-~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~ 712 (832)
. ++|.+.| ++.|.|.+.|+.++++|+++|++||+||+++|||||+||+||+|+|+|+++|. ||++. +|+.|+++
T Consensus 512 ~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~~ 588 (691)
T 1dar_A 512 IKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEM---AFKIAGSM 588 (691)
T ss_dssp EEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHH---HHHHHHHH
T ss_pred EEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccccCcchH---HHHHHHHH
Confidence 3 6664333 58899999999999999999999999999999999999999999999999997 76654 47799999
Q ss_pred HHHHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCc
Q 003305 713 VIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 792 (832)
Q Consensus 713 a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 792 (832)
||++|+++|+|+||||||+++|+||++++|+||++|++|||+|++++..++ +++|+|++|++|||||+++|||+|+|+
T Consensus 589 a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~ 666 (691)
T 1dar_A 589 AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGN--AQVIRAFVPLAEMFGYATDLRSKTQGR 666 (691)
T ss_dssp HHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETT--EEEEEEEEETTTSSSHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCC--eEEEEEEecHHHHhhHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999998774 799999999999999999999999999
Q ss_pred eeeeeEecceeecCCCCCCCchHHHHHHH
Q 003305 793 AFPQCVFDHWDMMSSDPLEPGTQAAQLVA 821 (832)
Q Consensus 793 ~~~~~~f~~y~~~~~~~~~~~~~a~~~~~ 821 (832)
|+|+|+|+||+++|+++ ++++++
T Consensus 667 ~~~~~~f~~y~~~~~~~------~~~i~~ 689 (691)
T 1dar_A 667 GSFVMFFDHYQEVPKQV------QEKLIK 689 (691)
T ss_dssp CEEEEEEEEEEECCHHH------HHHHHC
T ss_pred eEEEEEeCcceECChhH------HHHHHh
Confidence 99999999999999986 888775
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=3.2e-114 Score=1024.04 Aligned_cols=600 Identities=21% Similarity=0.281 Sum_probs=504.7
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc----eEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~----~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
+||||||+||+|||||||+++||+.+|.+.+ .|. .+++|++++|++|||||+++.+++.|+
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~--~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~------------- 65 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITE--LGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE------------- 65 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSS--CSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS-------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcc--ccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC-------------
Confidence 5899999999999999999999999999987 332 568999999999999999999999996
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHH
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (832)
+++|||||||||.||..|+.++++++|+||+||||++|+++||+.+|++|.++++|+|+||||||+. ++++..
T Consensus 66 ---~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~----~a~~~~ 138 (638)
T 3j25_A 66 ---NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN----GIDLST 138 (638)
T ss_dssp ---SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS----SCCSHH
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc----cCCHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 888555
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcC
Q 003305 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (832)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (832)
..+.+++ .+.. ++.+... + .+|.+....
T Consensus 139 ~~~~i~~-------~l~~----------------~~~~~~~--------------------~-------~~~~~~~~~-- 166 (638)
T 3j25_A 139 VYQDIKE-------KLSA----------------EIVIKQK--------------------V-------ELYPNVCVT-- 166 (638)
T ss_dssp HHHHHHH-------TTCC----------------CCCCCCC--------------------C-------CSCGGGCCC--
T ss_pred HHHHHHH-------HhCC----------------Cccccce--------------------e-------Eeecccccc--
Confidence 4444333 2210 0011000 0 001100000
Q ss_pred CCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc----
Q 003305 254 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA---- 328 (832)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 328 (832)
.+. + .++.+.+++.|++++++|+++ ..++..++. ..+.+.+. ..++|+
T Consensus 167 --~~~----------~----------~~~~e~~~e~~d~l~e~~~~~--~~~~~~~~~---~~~~~~~~~~~~~Pv~~gS 219 (638)
T 3j25_A 167 --NFT----------E----------SEQWDTVIEGNDDLLEKYMSG--KSLEALELE---QEESIRFQNCSLFPLYHGS 219 (638)
T ss_dssp --CCC----------C----------HHHHHHHHHHHCHHHHHHHHH--CCCCSHHHH---HHHHHHHHHTSCCCCCCCC
T ss_pred --ccc----------h----------hhhhhhhhcccHHHHhhhccC--CccchHHHH---HHHhhhhcccccccccccc
Confidence 000 0 134567777888999999998 566666664 33444443 578886
Q ss_pred ------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeee
Q 003305 329 ------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGK 402 (832)
Q Consensus 329 ------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~ 402 (832)
+++|||+|++++|+|.+ ++++|++|+|||+..+++.|+ ++|+|||||+
T Consensus 220 a~~~~Gv~~LLd~i~~~~p~p~~-------------------------~~~~~~~~~Vfk~~~d~~~G~-la~~RV~sG~ 273 (638)
T 3j25_A 220 AKSNIGIDNLIEVITNKFYSSTH-------------------------RGPSELCGNVFKIEYTKKRQR-LAYIRLYSGV 273 (638)
T ss_dssp STTCCSHHHHHHHHHHSCCCSGG-------------------------GSCCCCCBEEBCCCCCSTTCC-CCBCCBSSBC
T ss_pred cccCCCchhHhhhhhccccCccc-------------------------chhhhhcceeeeeeeeccCce-EEEEEEEcCc
Confidence 79999999999999953 235789999999999999987 9999999999
Q ss_pred eeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCccccccc
Q 003305 403 VSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAM 481 (832)
Q Consensus 403 L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~ 481 (832)
|++||.|++.+ . ++ +++.++|.++|++++++++|.|||||++.| ... ++| |+++.. ....++++
T Consensus 274 l~~g~~v~~~~----~-~~-----~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~--~~~~tl~d~~--~~~~~~~i 338 (638)
T 3j25_A 274 LHLRDSVRVSE----K-EK-----IKVTEMYTSINGELCKIDRAYSGEIVILQN-EFL--KLNSVLGDTK--LLPQRKKI 338 (638)
T ss_dssp CCSCCCSSSCC----C-CC-----SSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSC--SSEECSSSSS--SGGGCSCC
T ss_pred ccCCCcccccc----C-cc-----eeEEeeecccccccccccccccceEEEEec-ccc--ccCceecCCC--CcccccCc
Confidence 99999998532 1 22 699999999999999999999999999988 332 555 777765 55566677
Q ss_pred ccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCc
Q 003305 482 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDP 560 (832)
Q Consensus 482 ~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p 560 (832)
.++ +|+++++|+|.+++|++||.++|++|.+|||+++++.+ ++||++|+|||||||||+++||+++| |+++.+++|
T Consensus 339 ~~p-~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef--gvev~~~~P 415 (638)
T 3j25_A 339 ENP-HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY--HVEIELKEP 415 (638)
T ss_dssp CCC-CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT--CCCCEEECC
T ss_pred cCC-CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh--CCcEEEeCC
Confidence 765 99999999999999999999999999999999999987 89999999999999999999999999 999999999
Q ss_pred EEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEE-Eecc
Q 003305 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW-CFGP 639 (832)
Q Consensus 561 ~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~-~~~P 639 (832)
+|+|||||.++++.. |++ ++|+. ++|+- ++ .++|
T Consensus 416 ~V~yrEti~~~~~~~--------~~~----------------~~~~~--------------~~~~~-------v~~~~eP 450 (638)
T 3j25_A 416 TVIYMERPLKNAEYT--------IHI----------------EVPPN--------------PFWAS-------IGLSVSP 450 (638)
T ss_dssp CCCCCBCCCSCCEEC--------CCC----------------CSSSC--------------CCCCC-------CCEECCC
T ss_pred ceeEEEEecccceEE--------EEE----------------ecCCC--------------CceEE-------EEEEEec
Confidence 999999999876432 221 33321 23332 34 3677
Q ss_pred CCCC-CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHHHHHHH
Q 003305 640 ETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYAS 717 (832)
Q Consensus 640 ~~~g-~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~a 717 (832)
...| ++.|.+.+.|+.++++++++|++||++|+++| |||+||+|++|+|.|+++|. ||+ ..+|+.|+++||++|
T Consensus 451 ~~~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~~s~---~~~f~~a~~~a~~~a 526 (638)
T 3j25_A 451 LPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVST---PADFRMLAPIVLEQV 526 (638)
T ss_dssp CCSSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSCSCC---SHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccCCCCC---HHHHHHHHHHHHHHH
Confidence 5443 57788888999999999999999999999999 99999999999999999996 443 456889999999999
Q ss_pred HHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeee
Q 003305 718 QLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (832)
Q Consensus 718 l~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (832)
+++|+|+||||||+|+|+||++++|+||++|++|||+|++++..+ +.++|+|++|++|||||+++|||+|+|+|+|+|
T Consensus 527 ~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~ 604 (638)
T 3j25_A 527 LKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN--NEVILSGEIPARCIQEYRSDLTFFTNGRSVCLT 604 (638)
T ss_dssp HHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCT--TEEEEECCCSSCCHHHHHHHHHHTTTTCCEEEC
T ss_pred HHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecC--CeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEE
Confidence 999999999999999999999999999999999999999998766 478999999999999999999999999999999
Q ss_pred EecceeecCCCCCCCc
Q 003305 798 VFDHWDMMSSDPLEPG 813 (832)
Q Consensus 798 ~f~~y~~~~~~~~~~~ 813 (832)
+|+||++||+||++.+
T Consensus 605 ~f~~y~~vpgdp~~~~ 620 (638)
T 3j25_A 605 ELKGYHVTTGEPVCQP 620 (638)
T ss_dssp CCCCCCCCCSCCSCCC
T ss_pred EECceEECCCCccccc
Confidence 9999999999999864
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=3.6e-104 Score=942.21 Aligned_cols=634 Identities=23% Similarity=0.321 Sum_probs=541.5
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCC----ceEeecCcccccccCceeeeeeEEEEeeccchhhccccC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG----DVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g----~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (832)
..+.++|+|+||+|||||||+++|++..+.+.. .| ...++|+.+.|+++|+|+......+.|.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~--~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~----------- 72 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKER--RGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR----------- 72 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSS--CCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-----------
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCc--cceecCCcccccCCHHHHhcCCeEEecceEEeeC-----------
Confidence 357899999999999999999999988776443 22 1367899999999999999988888775
Q ss_pred cCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCH
Q 003305 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~ 171 (832)
++.+||||||||.+|..++.++++.+|++++|+|+++|+..|++.+|+++...++|+++|+||+|+. .+.
T Consensus 73 -----~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-----~~~ 142 (665)
T 2dy1_A 73 -----GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-----GDY 142 (665)
T ss_dssp -----TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-----CCH
T ss_pred -----CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-----hhH
Confidence 7899999999999999999999999999999999999999999999999999999999999999976 222
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecc--cCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003305 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (832)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (832)
++..+.+++ .+.. +....+|++ +++.||. |... ...| |
T Consensus 143 ~~~~~~l~~-------~l~~------------~~~~~~Pi~~~~~~~g~~----------------d~~~--~~~~---~ 182 (665)
T 2dy1_A 143 YALLEDLRS-------TLGP------------ILPIDLPLYEGGKWVGLI----------------DVFH--GKAY---R 182 (665)
T ss_dssp HHHHHHHHH-------HHCS------------EEECEEEEEETTEEEEEE----------------ETTT--TEEE---E
T ss_pred HHHHHHHHH-------HhCC------------cceEEeeecCCCcccchh----------------hhhh--hhee---e
Confidence 333333322 2210 011133333 3345552 2222 2334 3
Q ss_pred cCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccccc
Q 003305 250 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA 328 (832)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (832)
|++. .+... .....|.+++.+++++|++.+++.|++++++|+++ .+++.+++. ..++++++ ++|+|+
T Consensus 183 ~~~g--~~~~~-----~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~--~~l~~~~~~---~~~~~~~~~~~~~pv 250 (665)
T 2dy1_A 183 YENG--EEREA-----EVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEG--EEVTGEALE---KAFHEAVRRGLLYPV 250 (665)
T ss_dssp EETT--EEEEE-----CCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred cCCC--ceeEe-----cCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCCeeEE
Confidence 3332 13322 23456778888999999999999999999999996 788998886 56777766 578885
Q ss_pred ----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003305 329 ----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (832)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV 398 (832)
++.|||++++++|+|.+. ++++|++++|||+..+++.|+ ++|+||
T Consensus 251 ~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~------------------------~~~~p~~~~V~k~~~d~~~G~-~~~~rV 305 (665)
T 2dy1_A 251 ALASGEREIGVLPLLELILEALPSPTER------------------------FGDGPPLAKVFKVQVDPFMGQ-VAYLRL 305 (665)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCCHHHH------------------------HCSCSCEEEEEEEEEETTTEE-EEEEEE
T ss_pred EEeecccCcCHHHHHHHHHHhCCCcccc------------------------CCCCCeEEEEEEEEEcCCCCe-EEEEEE
Confidence 689999999999999642 135799999999999999887 999999
Q ss_pred eeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCCCCc--
Q 003305 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDA-- 475 (832)
Q Consensus 399 ~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~~~~-- 475 (832)
|||+|++||.|++.+ . .++|++|+.++|++.+++++|.|||||+|.|++++ .+| ||++.. .+
T Consensus 306 ~sG~l~~g~~v~~~~------~-----~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~--~~Gdtl~~~~--~~~~ 370 (665)
T 2dy1_A 306 YRGRLKPGDSLQSEA------G-----QVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL--HRGMVLWQGE--KPES 370 (665)
T ss_dssp EESEECTTEEEBCTT------S-----CEEESSEEEEETTEEEEESCEETTCEEEESSCTTC--CTTCEEESSS--CCCG
T ss_pred cccEEecCCEEEcCC------C-----eEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccC--ccCCEEecCC--Cccc
Confidence 999999999999531 2 27999999999999999999999999999999987 567 999876 44
Q ss_pred ccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCCCee
Q 003305 476 HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAE 554 (832)
Q Consensus 476 ~~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~~v~ 554 (832)
.++++++++ .|+++++|+|.+++|.+||.++|++|.+|||+|++..+ +|||++|+|||||||||+++||+ +| |++
T Consensus 371 ~~l~~~~~~-~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~--~v~ 446 (665)
T 2dy1_A 371 EEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DY--GVE 446 (665)
T ss_dssp GGSCCCCCC-CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HT--TCC
T ss_pred cccCCCCCC-CceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HC--Cce
Confidence 678889887 89999999999999999999999999999999999997 89999999999999999999999 99 999
Q ss_pred EEEcCcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeE
Q 003305 555 IIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKI 634 (832)
Q Consensus 555 v~~s~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 634 (832)
+.+++|+|+|||||.++++ ..++|++ |+|+. +||+. +
T Consensus 447 v~~~~p~V~yrEti~~~~~------~~~~~~k----------------~~gg~--------------g~~~~-------v 483 (665)
T 2dy1_A 447 VEFSVPKVPYRETIKKVAE------GQGKYKK----------------QTGGH--------------GQYGD-------V 483 (665)
T ss_dssp EEEECCCCCCEEEESSCEE------EEEEEEE----------------EETTE--------------EEEEE-------E
T ss_pred EEEeCCEEEEEEeecccee------eeeeccc----------------ccCCC--------------cceEE-------E
Confidence 9999999999999998763 3556666 66663 66663 6
Q ss_pred EE-eccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccc-cccccCCCchHHHHHH
Q 003305 635 WC-FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARR 712 (832)
Q Consensus 635 ~~-~~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~ 712 (832)
|. ++|.+ ++.|.+++.|+.++++++++|++||+||+++|||||+||+||+|+|+|+++|. ||++. +|+.|+++
T Consensus 484 ~~~~eP~~--g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~---~f~~a~~~ 558 (665)
T 2dy1_A 484 WLRLEPAS--EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDL---AFQIAASL 558 (665)
T ss_dssp EEEEEECS--SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHH---HHHHHHHH
T ss_pred EEEEEECC--CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccCCCCCHH---HHHHHHHH
Confidence 64 78865 58999999999999999999999999999999999999999999999999997 77654 46789999
Q ss_pred HHHHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCc
Q 003305 713 VIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 792 (832)
Q Consensus 713 a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 792 (832)
||++|+++|+|+||||||+++|+||++++|+||++|++|||+|++++..+ ++++|+|++|++|||||+++|||+|+|+
T Consensus 559 a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~a~~P~~e~~~~~~~Lrs~T~G~ 636 (665)
T 2dy1_A 559 AFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG--ALSVVHAEVPLAEVLEYYKALPGLTGGA 636 (665)
T ss_dssp HHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET--TEEEEEEEEEGGGCTTHHHHHHHHHTTC
T ss_pred HHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC--CeEEEEEEECHHHHhhHHHHhHhhcCCc
Confidence 99999999999999999999999999999999999999999999999876 4899999999999999999999999999
Q ss_pred eeeeeEecceeecCCCCCCCchHHHHHHHHHH
Q 003305 793 AFPQCVFDHWDMMSSDPLEPGTQAAQLVADIR 824 (832)
Q Consensus 793 ~~~~~~f~~y~~~~~~~~~~~~~a~~~~~~~r 824 (832)
|+|+|+|+||+++|+++ +++++++.+
T Consensus 637 ~~~~~~f~~y~~~~~~~------~~~~~~~~~ 662 (665)
T 2dy1_A 637 GAYTLEFSHYAEVPPHL------AQRIVQERA 662 (665)
T ss_dssp CEEEEEEEEEEECCHHH------HHHHHHHHH
T ss_pred EEEEEEeCceeECCccH------HHHHHHHHh
Confidence 99999999999999986 999998864
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=8.5e-78 Score=698.29 Aligned_cols=449 Identities=21% Similarity=0.288 Sum_probs=321.3
Q ss_pred cccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc------cCCceEeecCcccccccCceeeeeeEEEEeeccchhhc
Q 003305 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (832)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~------~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (832)
....++|||||+||+|||||||+++||+.+|.+.+. ..+..+++|+.++|++|||||.++.+++.|.
T Consensus 26 ~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~------- 98 (548)
T 3vqt_A 26 REAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR------- 98 (548)
T ss_dssp HHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET-------
T ss_pred hcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC-------
Confidence 345689999999999999999999999999998762 1122478999999999999999999999996
Q ss_pred cccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccc
Q 003305 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (832)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~ 167 (832)
+++|||||||||.||..|+.++|+++|+||+||||++|+++||+.+|++|.++++|+++||||||+.
T Consensus 99 ---------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~---- 165 (548)
T 3vqt_A 99 ---------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE---- 165 (548)
T ss_dssp ---------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC----
T ss_pred ---------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceeccc--CccceeeehhhHHHHhhhccCCChHHHHHHhh
Q 003305 168 QVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMERLW 245 (832)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w 245 (832)
++++.++.+.+++.+.. .+...++|++. .+.|+.+.+.. ..+.|
T Consensus 166 ~ad~~~~~~~i~~~l~~------------------~~~p~~~Pig~~~~f~g~vdl~~~----------------~~~~~ 211 (548)
T 3vqt_A 166 ALHPLDVMADIEQHLQI------------------ECAPMTWPIGMGSSFKGTYDLLHK----------------QLHLF 211 (548)
T ss_dssp CCCHHHHHHHHHHHHTS------------------EEEESEEEESCGGGCCEEEETTTT----------------EEEEC
T ss_pred hcchhHhhhhhhhhcCC------------------ceEeEEeeeecCCcccceEeeeee----------------eeeec
Confidence 99966665555543321 12233455554 46666554432 23333
Q ss_pred cCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhcc
Q 003305 246 GENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTW 325 (832)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 325 (832)
...... ............ ...+.+ ..+...+...+.++. +...+.+...+. .+ .+++
T Consensus 212 ~~~~~~-~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~l-~~~~~~~~~~e~-------~~---~g~~ 268 (548)
T 3vqt_A 212 SATHGG-RIQSGIVIHGAD---DPQLDE--------YLGDQAEQLRMDLAL-LEEAGTPFDEER-------YL---KGEL 268 (548)
T ss_dssp C--------CCCEECCSTT---CTHHHH--------HHGGGHHHHHHHHHH-HHHHCCCCCHHH-------HH---TTSE
T ss_pred ccccCC-cccccccccccc---hHHHHH--------HHHHHHHHhhhHHHH-HhhccCchhHHH-------HH---hCCc
Confidence 211100 000000000000 000000 000000000011111 111112222211 11 1567
Q ss_pred ccc----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeec---CCCCcc
Q 003305 326 LPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPA---SDKGRF 392 (832)
Q Consensus 326 ~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~---~~~g~~ 392 (832)
+|+ +++|||+|++|+|+|.+..... . ...+.+.||+|+|||+..+ ++.|+
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~---------------~-~~~~~~~p~~a~vfKi~~~~~~~~~Gr- 331 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT---------------R-VVEPGEEAFTGVVFKIQANMDKAHRDR- 331 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS---------------S-EECTTCSSCEEEEEEEECC-------C-
T ss_pred ceeeecccccCcCHHHHHHHHHHhCCCCCCccccc---------------c-ccCCCCcCceEEEEEEEccCCcCCCCe-
Confidence 886 7999999999999996543210 0 0123467999999999876 67787
Q ss_pred eeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCC
Q 003305 393 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEK 471 (832)
Q Consensus 393 l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~ 471 (832)
++|+|||||+|++|+.|++. +++++ +|+++++.++|.++++|++|.|||||+|.|++++ .+| |||+..
T Consensus 332 la~~RV~sG~l~~g~~v~~~----~~~~~-----~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GDTl~~~~ 400 (548)
T 3vqt_A 332 MAFLRICSGTFTRGMRLKHH----RTGKD-----VTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI--KIGDTFTESK 400 (548)
T ss_dssp EEEEEEEESCEETTCEEEET----TTTEE-----EECTTCEECCCSSCCSSCEECTTCEEEEECSSCC--CTTCEEESSS
T ss_pred EEEEEEecceecCCCEEEee----ccccc-----cccchhhhhccccccccCEEecCCEEEecCCccC--ccCCEecCCC
Confidence 99999999999999999964 33433 8999999999999999999999999999999998 677 999877
Q ss_pred CCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEecChhhHHHHHHHHHhhcCC
Q 003305 472 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMG 551 (832)
Q Consensus 472 ~~~~~~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g~GelHLei~~~~L~~~f~~ 551 (832)
.+.++++++++ .|+++++|+|+++.|.+||.++|++|.++||+..+..++|||++|+|||||||||+++||+++|
T Consensus 401 --~~~~~~~i~~~-~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey-- 475 (548)
T 3vqt_A 401 --EVLKFVGIPNF-APEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEY-- 475 (548)
T ss_dssp --SCCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEEEEESSSCCCEEEESSTHHHHHHHHHHHHHH--
T ss_pred --CccccCCCCCC-CCcceeeeeeCCchhHHHHHHHHHHhhhcCceeEEEECCCCcEEEEEECHHHHHHHHHHHHHHh--
Confidence 67788888886 9999999999999999999999999999999665554499999999999999999999999999
Q ss_pred CeeEE-----EcCcEEeEeeeccccc
Q 003305 552 GAEII-----KSDPVVSFRETVLEKS 572 (832)
Q Consensus 552 ~v~v~-----~s~p~V~yrEti~~~~ 572 (832)
||++. ++.|+|+|||||+..+
T Consensus 476 ~vev~~e~v~~~~P~V~YrEti~~~~ 501 (548)
T 3vqt_A 476 GVDAVYEGVSTHTARWVYCEDKKIFA 501 (548)
T ss_dssp CCCEEEEECSCCEEEEEECSCHHHHH
T ss_pred CCCEEEeeccccCceEEecCCccchh
Confidence 99976 5789999999998876
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=6.2e-74 Score=666.78 Aligned_cols=490 Identities=26% Similarity=0.429 Sum_probs=377.6
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
.+++|||+|+||+|||||||+++|++.++.+.....+ .+++|+.+.|++||+|+.+..+.+.|.. .++
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGITI~~~~~~~~~~~-----------~dg 70 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKR-EQLLDTLDVERERGITVKMQAVRMFYKA-----------KDG 70 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEEC-----------TTS
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccccc-ccccccchhhhcccceeeeeEEEEEEEc-----------CCC
Confidence 3578999999999999999999999998887654333 4689999999999999999999888862 123
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHH
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~ 175 (832)
+.+.++|||||||.||..++.++++.+|+||+|||+++|++.||..+|.++...++|+++|+||||+. ++++++..
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~----~a~~~~v~ 146 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLP----SADVDRVK 146 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHHHH
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcc----ccCHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999998 77654433
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCC
Q 003305 176 QTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (832)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~ 255 (832)
+.+ ...+. +.+ .++..+|+..|.
T Consensus 147 ~el-------~~~lg-----------~~~--~~vi~vSAktg~------------------------------------- 169 (600)
T 2ywe_A 147 KQI-------EEVLG-----------LDP--EEAILASAKEGI------------------------------------- 169 (600)
T ss_dssp HHH-------HHTSC-----------CCG--GGCEECBTTTTB-------------------------------------
T ss_pred HHH-------HHhhC-----------CCc--ccEEEEEeecCC-------------------------------------
Confidence 222 21111 000 012222221110
Q ss_pred ceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHHH
Q 003305 256 KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEM 335 (832)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 335 (832)
| ++.||++
T Consensus 170 ----------------------------------------------G--------------------------I~~Lle~ 177 (600)
T 2ywe_A 170 ----------------------------------------------G--------------------------IEEILEA 177 (600)
T ss_dssp ----------------------------------------------S--------------------------HHHHHHH
T ss_pred ----------------------------------------------C--------------------------chHHHHH
Confidence 0 1457888
Q ss_pred HHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCC
Q 003305 336 MIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPN 415 (832)
Q Consensus 336 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n 415 (832)
+++++|+|. .++++|+.++|||++.+++.|. ++++||++|+|++||.|+++.
T Consensus 178 I~~~lp~p~-------------------------~~~~~pl~~lV~~~~~d~~~G~-v~~~rV~sG~l~~Gd~I~~~~-- 229 (600)
T 2ywe_A 178 IVNRIPPPK-------------------------GDPQKPLKALIFDSYYDPYRGA-VAFVRIFDGEVKPGDKIMLMS-- 229 (600)
T ss_dssp HHHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEECTTCEEEETT--
T ss_pred HHHhccccc-------------------------ccccCCcceeEEEEeecccceE-EEEEEEEeCEEecCCEEEecc--
Confidence 889999983 2356899999999999998887 999999999999999999753
Q ss_pred CCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe-c---cccccccce-eeecCCCCCcccccccccCCCceEE
Q 003305 416 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 490 (832)
Q Consensus 416 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~-g---l~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~ 490 (832)
.+. .++|.+++.+.+ +..+++++.||||+++. | ++++ ++| ||++...+...+++++.++ +|+++
T Consensus 230 --~~~-----~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P~v~ 298 (600)
T 2ywe_A 230 --TGK-----EYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDI--RIGDTITHAKNPTKEPVPGFQPA-KPMVY 298 (600)
T ss_dssp --TTE-----EEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSS--CTTCEEEESSSCCSSCCSCCCCC-CCCEE
T ss_pred --ccc-----eEeeecccccCC-CceECCEEecCceeeeeccccchhhc--cCCCEEEeCCCccccccCCCCCC-CcEEE
Confidence 222 279999998876 58899999999999885 5 4455 667 9998762111467888875 99999
Q ss_pred EEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEe-----cChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEe
Q 003305 491 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 565 (832)
Q Consensus 491 ~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g-----~GelHLei~~~~L~~~f~~~v~v~~s~p~V~yr 565 (832)
++|+|.+..|.++|.++|++|.+|||+|+++ .+|+|.++.| ||||||||+++||+++| |+++.+++|+|+||
T Consensus 299 ~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~--~~~v~~~~P~V~yr 375 (600)
T 2ywe_A 299 AGIYPAEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREY--GVKIITTAPNVIYR 375 (600)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS--CCCEEECCCEECEE
T ss_pred EEeeccccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhc--CceEEEEeeeEEEE
Confidence 9999999999999999999999999999997 4678877777 99999999999999999 99999999999999
Q ss_pred eeccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCc
Q 003305 566 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 645 (832)
Q Consensus 566 Eti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~ 645 (832)
|||++.. +. +.+ + .
T Consensus 376 eti~~~g----------~~----~~~-----------~----------------------------------~------- 389 (600)
T 2ywe_A 376 VKKKFTD----------EV----IEV-----------R----------------------------------N------- 389 (600)
T ss_dssp EEETTCS----------SC----EEE-----------S----------------------------------S-------
T ss_pred EEecCCC----------cE----EEE-----------e----------------------------------C-------
Confidence 9987321 00 000 0 0
Q ss_pred eEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCee
Q 003305 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725 (832)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~L 725 (832)
| +++|+.+ + +. ++|
T Consensus 390 ------------------------------p-~~~p~~~----------~----~~---------------------~~l 403 (600)
T 2ywe_A 390 ------------------------------P-MDFPDNA----------G----LI---------------------EYV 403 (600)
T ss_dssp ------------------------------G-GGSCSCG----------G----GE---------------------EEE
T ss_pred ------------------------------h-hhCCCCC----------c----cc---------------------ccc
Confidence 1 3566655 0 00 379
Q ss_pred eeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhh-cCccHHhhhhCCCceeeeeEecceee
Q 003305 726 LEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDM 804 (832)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (832)
|||||+++|.+|++|+|+||++|++|||++.+++..++ ++..|+|.+|++|| +||.++|||+|+|+|+|+++|+||++
T Consensus 404 lEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~-~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~ 482 (600)
T 2ywe_A 404 EEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP-NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRP 482 (600)
T ss_dssp EEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET-TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEE
T ss_pred cCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC-CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceE
Confidence 99999999999999999999999999999999998543 58999999999999 89999999999999999999999999
Q ss_pred c---------CCCCCCC----------chHHHHHHHHHHH
Q 003305 805 M---------SSDPLEP----------GTQAAQLVADIRK 825 (832)
Q Consensus 805 ~---------~~~~~~~----------~~~a~~~~~~~r~ 825 (832)
+ .++|.|. ....++++++.+.
T Consensus 483 ~~~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (600)
T 2ywe_A 483 SDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRE 522 (600)
T ss_dssp CCEEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9 7777763 2367777777664
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=4.2e-72 Score=653.06 Aligned_cols=486 Identities=26% Similarity=0.414 Sum_probs=368.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+++|||+|+||+|||||||+++|++.+|.+.....+ .+++|+.+.|++||+|+....+.+.|.. .+++
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGiTi~~~~~~~~~~~-----------~~g~ 69 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREME-AQVLDSMDLERERGITIKAQSVTLDYKA-----------SDGE 69 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEEC-----------TTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccccc-ccccccchhhhcccceeeeeEEEEEEec-----------CCCC
Confidence 468999999999999999999999999888764333 4689999999999999999999998861 1234
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccCCHHHHHH
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (832)
.+.++|||||||.||..++.++++.+|+||+|+|+++|++.||..+|..+...++|+++|+||+|+. ++++++..+
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~----~a~~~~v~~ 145 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLP----AADPERVAE 145 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHHHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcc----cccHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999998 777554433
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003305 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (832)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (832)
.+.+. +.. .+ .++..+|+..|.
T Consensus 146 ei~~~-------lg~-----------~~--~~vi~vSAktg~-------------------------------------- 167 (599)
T 3cb4_D 146 EIEDI-------VGI-----------DA--TDAVRCSAKTGV-------------------------------------- 167 (599)
T ss_dssp HHHHH-------TCC-----------CC--TTCEEECTTTCT--------------------------------------
T ss_pred HHHHH-------hCC-----------Cc--ceEEEeecccCC--------------------------------------
Confidence 32221 110 00 011222221110
Q ss_pred eEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHHHH
Q 003305 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (832)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (832)
| ++.||+.+
T Consensus 168 ---------------------------------------------G--------------------------I~~Ll~~I 176 (599)
T 3cb4_D 168 ---------------------------------------------G--------------------------VQDVLERL 176 (599)
T ss_dssp ---------------------------------------------T--------------------------HHHHHHHH
T ss_pred ---------------------------------------------C--------------------------chhHHHHH
Confidence 0 14578888
Q ss_pred HhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCC
Q 003305 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (832)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~ 416 (832)
++++|+|. .++++|+.++||+++.+++.|. ++++||++|+|++||.++++.
T Consensus 177 ~~~lp~p~-------------------------~~~~~p~~alI~d~~~d~~~G~-v~~~rV~sG~l~~Gd~v~~~~--- 227 (599)
T 3cb4_D 177 VRDIPPPE-------------------------GDPEGPLQALIIDSWFDNYLGV-VSLIRIKNGTLRKGDKVKVMS--- 227 (599)
T ss_dssp HHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESCEESSCEEEETT---
T ss_pred hhcCCCcc-------------------------ccccCCceeeeeeccccccccE-EEEEEEEeCEEecCCEEEecc---
Confidence 89999983 2357899999999999999887 999999999999999999753
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe-c---cccccccce-eeecCCCCCcccccccccCCCceEEE
Q 003305 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 491 (832)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~-g---l~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 491 (832)
++. .++|.+++.+.+. .++++++.||||+++. | ++++ ++| ||++...+...+++++.++ +|++++
T Consensus 228 -~~~-----~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P~v~~ 297 (599)
T 3cb4_D 228 -TGQ-----TYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGA--PVGDTLTLARNPAEKALPGFKKV-KPQVYA 297 (599)
T ss_dssp -TCC-----EEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGS--CTTCEEEESSSCCSSCCTTCCCC-CCCEEE
T ss_pred -ccc-----eeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccC--ccCCEeeecCCccccccccccCC-CcceEE
Confidence 222 2799999988865 8899999999998884 4 4455 566 9998762222567788775 999999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhhCCcEEEEEcCCcceEEEe-----cChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEee
Q 003305 492 AVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 566 (832)
Q Consensus 492 ~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~etge~il~g-----~GelHLei~~~~L~~~f~~~v~v~~s~p~V~yrE 566 (832)
+++|.+..|.++|.++|++|.++||+|++. .+++|.++.| ||||||||+++||+++| |+++.+++|+|+|||
T Consensus 298 ~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~--~~~~~~~~P~V~yre 374 (599)
T 3cb4_D 298 GLFPVSSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREY--DLDLITTAPTVVYEV 374 (599)
T ss_dssp EEEESSGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS--CCCEEECCCEECEEE
T ss_pred EEEecCccCHHHHHHHHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHc--CceEEEEeeeEEEEE
Confidence 999999999999999999999999999997 5788877777 99999999999999999 999999999999999
Q ss_pred eccccccceEeeecCCCceEEEEEEeeCchhhhhHHhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCce
Q 003305 567 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNM 646 (832)
Q Consensus 567 ti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~~ 646 (832)
||++.+. +.+ . .|.
T Consensus 375 ti~~g~~---------------~~~-----------~----------------------------------~p~------ 388 (599)
T 3cb4_D 375 ETTSREV---------------IYV-----------D----------------------------------SPS------ 388 (599)
T ss_dssp EESSSCE---------------EEE-----------S----------------------------------SGG------
T ss_pred EecCCce---------------EEe-----------c----------------------------------Chh------
Confidence 9875320 000 0 010
Q ss_pred EEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeee
Q 003305 647 VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLL 726 (832)
Q Consensus 647 ~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~Ll 726 (832)
++|..+ .-..||
T Consensus 389 --------------------------------~~p~~~------------------------------------~~~~ll 400 (599)
T 3cb4_D 389 --------------------------------KLPAVN------------------------------------NIYELR 400 (599)
T ss_dssp --------------------------------GSCCGG------------------------------------GEEEEE
T ss_pred --------------------------------hCCCcc------------------------------------ccchhh
Confidence 112110 002799
Q ss_pred eeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhh-cCccHHhhhhCCCceeeeeEecceeec
Q 003305 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDMM 805 (832)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~~ 805 (832)
||||+++|.+|++|+|+||++|++|||++++++..++ +..|+|.+|++|| +||.++|||+|+|+|+|+++|+||+++
T Consensus 401 EP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~--~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 401 EPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGN--QVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTT--EEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred ccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCC--eEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEe
Confidence 9999999999999999999999999999999998663 8999999999999 899999999999999999999999999
Q ss_pred ---------CCCCCCC----------chHHHHHHHHHHH
Q 003305 806 ---------SSDPLEP----------GTQAAQLVADIRK 825 (832)
Q Consensus 806 ---------~~~~~~~----------~~~a~~~~~~~r~ 825 (832)
.++|.|. ....++++.+.+.
T Consensus 479 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (599)
T 3cb4_D 479 DMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMKD 517 (599)
T ss_dssp CEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred cccccccccCCcEecccceeccHHHHHHHHHHHHHHHHh
Confidence 6666552 2357777777664
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=6.8e-63 Score=570.97 Aligned_cols=444 Identities=20% Similarity=0.261 Sum_probs=309.6
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc------cCCceEeecCcccccccCceeeeeeEEEEeeccchhhccc
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY 89 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~------~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (832)
..+++||+|+||+|||||||+++|++..+.+... ......++|+.+.|++||+|+......+.|.
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------- 80 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--------- 80 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET---------
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC---------
Confidence 3568999999999999999999999987766431 0112457899999999999999999888886
Q ss_pred cCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccC
Q 003305 90 KGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQV 169 (832)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~ 169 (832)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.|++.+|+.+...++|+++|+||+|+. ..
T Consensus 81 -------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~----~~ 149 (529)
T 2h5e_A 81 -------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD----IR 149 (529)
T ss_dssp -------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC----CS
T ss_pred -------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc----cc
Confidence 7999999999999999999999999999999999999999999999999988999999999999998 77
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003305 170 DGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (832)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (832)
++.+..+.+++ .+.. .+...++|++|+..+.++ .|+.....+.|.+.
T Consensus 150 ~~~~~~~~i~~-------~l~~-----------~~~~~~~pi~sa~~~~Gv--------------~dl~~~~~~~~~~~- 196 (529)
T 2h5e_A 150 DPMELLDEVEN-------ELKI-----------GCAPITWPIGCGKLFKGV--------------YHLYKDETYLYQSG- 196 (529)
T ss_dssp CHHHHHHHHHH-------HHCC-----------EEEESEEEESCGGGCCEE--------------EETTTTEEEECCTT-
T ss_pred cHHHHHHHHHH-------HhCC-----------CccceecceecccCccee--------------eehhhhhHhhhccc-
Confidence 75443333322 2210 112235566776443332 11111112222110
Q ss_pred cCcCC-CceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hcccc
Q 003305 250 FDPAT-KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLP 327 (832)
Q Consensus 250 ~~~~~-~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P 327 (832)
.+.. ..+...+ + ... + .|.+. .+++++++|+++ .++..+++. ..+.+++. ++++|
T Consensus 197 -~g~~~~~~~~i~-~---~~~--------~--~l~e~---~~~~~~~~~~e~--~~l~~~~~~---~~~~~~~~~~~~~P 253 (529)
T 2h5e_A 197 -KGHTIQEVRIVK-G---LNN--------P--DLDAA---VGEDLAQQLRDE--LELVKGASN---EFDKELFLAGEITP 253 (529)
T ss_dssp -CCSSCCCCCEEC-C---SSC--------H--HHHHH---HCHHHHHHHHHH--HHHHHHHSC---CCCHHHHHTTSEEE
T ss_pred -CCCcccccccCC-C---CCH--------H--HHHHh---hCHHHHHHhhcc--cchhhhhhh---hhhHHHHHhCceeE
Confidence 0000 0000000 0 000 0 11121 144566677665 233222221 11223333 56777
Q ss_pred c----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCC-CCCeEEEEEEeee---cCCCCcce
Q 003305 328 A----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP-NGPLMLYVSKMIP---ASDKGRFF 393 (832)
Q Consensus 328 ~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~va~VfK~~~---~~~~g~~l 393 (832)
+ ++.|||++++++|+|.+.... .. .+++ ++||+|+|||+.. +++.|+ +
T Consensus 254 v~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~---------------~~--~~~~~~~~~~~~vfKi~~~~d~~~~G~-i 315 (529)
T 2h5e_A 254 VFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD---------------TR--TVEASEDKFTGFVFKIQANMDPKHRDR-V 315 (529)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS---------------SC--EECTTCCSCEEEEEEECSSCCSSSSCC-C
T ss_pred EEeeecccCCCHHHHHHHHHHhCCCCCccccc---------------cc--ccCCCCCCeEEEEEEEeeccCcCCCce-E
Confidence 5 689999999999999654210 00 1222 6899999999976 356777 9
Q ss_pred eeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCCC
Q 003305 394 AFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKE 472 (832)
Q Consensus 394 ~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~~ 472 (832)
+|+|||||+|++||.|++.+ .++ .++|++++.++|.++++|++|.|||||++.|++++ ++| |||+.+
T Consensus 316 ~~~RV~sG~l~~g~~v~~~~----~~~-----~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~--~~Gdtl~~~~- 383 (529)
T 2h5e_A 316 AFMRVVSGKYEKGMKLRQVR----TAK-----DVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI--QIGDTFTQGE- 383 (529)
T ss_dssp EEEEEEESCEETTCEEEETT----TTE-----EEECSCEECCCC-----CCEECTTCEEEECCSSCC--CTTCEEESSC-
T ss_pred EEEEEecCeEcCCCEEEEee----CCC-----EEEeceeeEEeCCCceEcceECCCCEEEEeccCCC--ccCCEeecCC-
Confidence 99999999999999999653 233 27999999999999999999999999999999987 667 999865
Q ss_pred CCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcCC
Q 003305 473 VDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMG 551 (832)
Q Consensus 473 ~~~~~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~~ 551 (832)
...+++++++ .|+++++|+|+++.|.+||.+||++|++||| +++..+ +|||++|+|||||||||+++||+++|
T Consensus 384 --~~~~~~~~~~-~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey-- 457 (529)
T 2h5e_A 384 --MMKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEY-- 457 (529)
T ss_dssp --CCCBCCCEEE-CCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHS--
T ss_pred --ccccCCCCCC-CccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHh--
Confidence 3577888876 8999999999999999999999999999998 888876 89999999999999999999999999
Q ss_pred CeeEEEcCcEEeEeeecccc
Q 003305 552 GAEIIKSDPVVSFRETVLEK 571 (832)
Q Consensus 552 ~v~v~~s~p~V~yrEti~~~ 571 (832)
|+++.+++|+|+|||||...
T Consensus 458 ~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 458 NVEAVYESVNVATARWVECA 477 (529)
T ss_dssp SCCEEEECCCCSEEEEEECS
T ss_pred CcEEEEecCceeEEEEEcCC
Confidence 99999999999999999643
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=2.1e-61 Score=557.81 Aligned_cols=442 Identities=20% Similarity=0.271 Sum_probs=333.9
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc------CCceEeecCcccccccCceeeeeeEEEEeeccchhhccc
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV------AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY 89 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~------~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (832)
.+++|||+|+||+|+|||||+++|++..+.+.... .....++|+.+.|+++|+|+..+...+.|.
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------- 80 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--------- 80 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET---------
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC---------
Confidence 45789999999999999999999999988875420 011347888999999999999999999886
Q ss_pred cCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccccccC
Q 003305 90 KGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQV 169 (832)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~~~~~ 169 (832)
++.++|||||||.+|..++.++++.+|+||+|+|+++|++.++..+|+++...++|+++|+||+|+. +.
T Consensus 81 -------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~----~~ 149 (528)
T 3tr5_A 81 -------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD----TR 149 (528)
T ss_dssp -------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC----CS
T ss_pred -------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc----cc
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 77
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcC
Q 003305 170 DGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 247 (832)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~ 247 (832)
++.+..+.+++ .++. .+...++|++++ +.|. +|+.....+.|.+
T Consensus 150 ~~~~~l~ei~~---~l~~---------------~~~~~~~pig~~~~f~gv----------------~dl~~~~~~~~~~ 195 (528)
T 3tr5_A 150 PSIELLDEIES---ILRI---------------HCAPVTWPIGMGKYFKGI----------------YHLIEDAIYLYQP 195 (528)
T ss_dssp CHHHHHHHHHH---HHCC---------------EEEESEEEESCGGGCCEE----------------EETTTTEEEECCT
T ss_pred cHHHHHHHHHH---hhCC---------------CceeeecccccCCceeEE----------------EEeecCEEEEecC
Confidence 75544333332 2211 112234555544 3333 3444433444532
Q ss_pred cccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHH-hccc
Q 003305 248 NFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWL 326 (832)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~ 326 (832)
.- .......+ ...... ++ +++..+. ++ +++|+++ +++..++... ..++++. ++++
T Consensus 196 ~~----~~~~~~~~-----~~~~~~----~~---~~~~~l~--~~-~~~~~e~--~~l~~~~~~~---~~~~~~~~~~~~ 251 (528)
T 3tr5_A 196 GK----HERVGESE-----RIEGIN----NP---ELDKKLG--DL-ASELRNE--IELVKGASHP---FEREGYLKGELT 251 (528)
T ss_dssp TS----SSSTTCSC-----EEECTT----CH---HHHHHHT--HH-HHHHHHH--HHHHHHHSCC---CCHHHHHTTSEE
T ss_pred CC----CCcccccc-----cccccc----hH---HHHHHHH--HH-HHHHhhh--cchhhhhhhH---HHHHHHhcCcee
Confidence 10 00000000 000000 00 1111111 11 5566655 2222222110 0133333 5778
Q ss_pred cc----------hHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccC-CCCCeEEEEEEeee--cC-CCCcc
Q 003305 327 PA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCD-PNGPLMLYVSKMIP--AS-DKGRF 392 (832)
Q Consensus 327 P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~va~VfK~~~--~~-~~g~~ 392 (832)
|+ ++.|||++++++|+|.+..... ..++ .++|++|+|||+.. ++ ++|+
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~-----------------~~~~~~~~~~~~~VFKi~~~~dp~~~g~- 313 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS-----------------RLVKPEEEKFSGFVFKIQANMDPGHRDR- 313 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS-----------------SCBCTTSSSCEEEEEEEEECCC-CCCCE-
T ss_pred EEEeccccCCccHHHHHHHHHHhCCCCCcccccc-----------------eeeCCCcccceeEEEEEecccCccCCce-
Confidence 86 7999999999999996543210 0122 36899999999986 67 7787
Q ss_pred eeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEeccccccccce-eeecCC
Q 003305 393 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEK 471 (832)
Q Consensus 393 l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~~tg-Tl~~~~ 471 (832)
++|+|||||+|++|+.|++. +.+++ +||++++.++|+++++|++|.|||||++.|++++ ++| |||+..
T Consensus 314 l~~~RV~sG~l~~g~~v~~~----~~~~~-----~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~--~~GDtl~~~~ 382 (528)
T 3tr5_A 314 IAFLRIASGQYQKGMKAYHV----RLKKE-----IQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI--QIGDTFTQGE 382 (528)
T ss_dssp EEEEEEEESCEETTEEEEET----TTTEE-----EEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC--CTTCEEESSC
T ss_pred EEEEEEecCeEcCCCEEEec----CCCce-----EEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC--ccCCEEcCCC
Confidence 99999999999999999964 33333 7999999999999999999999999999999987 778 999843
Q ss_pred CCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCcEEEEEc-CCcceEEEecChhhHHHHHHHHHhhcC
Q 003305 472 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFM 550 (832)
Q Consensus 472 ~~~~~~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L~~eDPsl~v~~~-etge~il~g~GelHLei~~~~L~~~f~ 550 (832)
...+++++++ .|+++++|+|+++.|.+||.+||++|.+|||+ ++..+ +|||++|+|||||||||+++||+++|
T Consensus 383 ---~~~~~~~~~~-~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey- 456 (528)
T 3tr5_A 383 ---RFKFTGIPNF-ASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEY- 456 (528)
T ss_dssp ---CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHH-
T ss_pred ---CcccCCCCCC-CCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHh-
Confidence 5677788876 89999999999999999999999999999997 66666 89999999999999999999999999
Q ss_pred CCeeEEEcCcEEeEeeecccc
Q 003305 551 GGAEIIKSDPVVSFRETVLEK 571 (832)
Q Consensus 551 ~~v~v~~s~p~V~yrEti~~~ 571 (832)
|+++.+++|+|+|+++|...
T Consensus 457 -~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 457 -NVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp -CCCEEEECCSCCEEEEEECS
T ss_pred -CcEEEEecCceEEEEEecCC
Confidence 99999999999999998753
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1e-38 Score=338.97 Aligned_cols=195 Identities=23% Similarity=0.381 Sum_probs=158.9
Q ss_pred EEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEeCCC----CC-----hhHHHHHHHHHHhhCCcEEEEE
Q 003305 453 AMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVA----SD-----LPKLVEGLKRLAKSDPMVVCTI 522 (832)
Q Consensus 453 ~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~~Iep~~~----~d-----~~kl~~~L~~L~~eDPsl~v~~ 522 (832)
|++||+++ .+| |||+.. .+.+++++.++ +|+++++|+|.+. +| ..+|.++|++|.++||+|+|+.
T Consensus 2 av~Gl~~~--~iGDTl~~~~--~p~~L~~~~~~-ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~ 76 (332)
T 3e3x_A 2 NATGLGEL--KISDTICAQN--AVEALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQ 76 (332)
T ss_dssp -------------------------------CC-CCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CccCCCCC--ccCCEEcCCC--CcccCCCCCCC-CCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEE
Confidence 57899887 677 999887 56788888886 9999999999987 65 6799999999999999999999
Q ss_pred c-CCcceEEEecChhhHHHHHHHHHhhcCCCeeEEEcCcEEeEeeeccccccceEeeecCCCceEEEEEEeeCchhhhhH
Q 003305 523 E-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEA 601 (832)
Q Consensus 523 ~-etge~il~g~GelHLei~~~~L~~~f~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~ 601 (832)
+ +++|++|+|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 77 ~~~t~~~~v~G~GELHLeIl~ErLrrE---g~ev~v~~P~V~YrEt----~----------------------------- 120 (332)
T 3e3x_A 77 TDDPDKFRVSGRGELHLSILIENMRRE---GFELAVSRPEVIIXEE----D----------------------------- 120 (332)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHH---TBCEEECCCEECCEEE----T-----------------------------
T ss_pred cCCCCeEEEEeeCHHHHHHHHHHHHhc---CceEEEeCCEEEEEEE----C-----------------------------
Confidence 8 8999999999999999999999999 8999999999999996 0
Q ss_pred HhcCCCCCCCChhHHHHHhhhhcCCchhccCeEEEeccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCC
Q 003305 602 IDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 681 (832)
Q Consensus 602 i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~p 681 (832)
|
T Consensus 121 ---------------------------------------------------G---------------------------- 121 (332)
T 3e3x_A 121 ---------------------------------------------------G---------------------------- 121 (332)
T ss_dssp ---------------------------------------------------T----------------------------
T ss_pred ---------------------------------------------------C----------------------------
Confidence 1
Q ss_pred ceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeeeccc
Q 003305 682 MRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 761 (832)
Q Consensus 682 v~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~ 761 (832)
+||||||.++|.||++++|+|+++|++|||+|.+++..
T Consensus 122 ------------------------------------------~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~ 159 (332)
T 3e3x_A 122 ------------------------------------------QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPD 159 (332)
T ss_dssp ------------------------------------------EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEC
T ss_pred ------------------------------------------EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceEC
Confidence 78999999999999999999999999999999999886
Q ss_pred CCCCcEEEEEEeechhhcCccHHhhhhCCCceeeeeEecceeec-CCCCC
Q 003305 762 PGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM-SSDPL 810 (832)
Q Consensus 762 ~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~-~~~~~ 810 (832)
++ +++.|+|++|++||+||.++|||+|+|+|+|+++|+||+++ |++.-
T Consensus 160 ~~-g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~ 208 (332)
T 3e3x_A 160 GK-GRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIG 208 (332)
T ss_dssp SS-SEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCS
T ss_pred CC-CeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCccc
Confidence 53 58899999999999999999999999999999999999999 89864
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=9.6e-29 Score=280.55 Aligned_cols=286 Identities=20% Similarity=0.297 Sum_probs=204.5
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-----eEeecCcccccccCceeeeeeEEEEee
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
.+..+||+++||+|+|||||+++|++.++.+.... .|. .+++|..++|+++|+|++.....+.+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35678999999999999999999999988876532 121 357899999999999999988887775
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccc-------hhHHHHHHHHHcCCCC-
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR- 152 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~-------~qt~~~~~~~~~~~~p- 152 (832)
++.++|||||||.+|...+..+++.+|++|||||+++|+. +||++++..+...++|
T Consensus 94 ----------------~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~ 157 (439)
T 3j2k_7 94 ----------------KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 157 (439)
T ss_pred ----------------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCe
Confidence 7899999999999999999999999999999999999986 7999999999999999
Q ss_pred eEEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeec-ccceecccCccceeeehhhHHHHhhh
Q 003305 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPE-KGTVAFSAGLHGWAFTLTNFAKMYAS 231 (832)
Q Consensus 153 ~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~-~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (832)
+|+++||||+. ..++. ..+++++.+++..++..+.. .|. ..++...|+..|++..
T Consensus 158 iIvviNK~Dl~----~~~~~--~~~~~~i~~~~~~~l~~~g~--------~~~~~~~~i~iSA~~G~ni~---------- 213 (439)
T 3j2k_7 158 LIVLINKMDDP----TVNWS--NERYEECKEKLVPFLKKVGF--------NPKKDIHFMPCSGLTGANLK---------- 213 (439)
T ss_pred EEEEeecCCCc----ccchH--HHHHHHHHHHHHHHHHHhcc--------cccCCeeEEEeeccCCcccc----------
Confidence 78899999986 44322 22344444444444432211 111 1133445666665331
Q ss_pred ccCCChHHHHH-HhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHH
Q 003305 232 KFGVDESKMME-RLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK 310 (832)
Q Consensus 232 ~~~i~~~~l~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el 310 (832)
.+.. ..| |+.
T Consensus 214 -------~l~~~~~w----~~g---------------------------------------------------------- 224 (439)
T 3j2k_7 214 -------EQSDFCPW----YIG---------------------------------------------------------- 224 (439)
T ss_pred -------cccccccc----cCc----------------------------------------------------------
Confidence 0000 011 000
Q ss_pred hhhhHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCC
Q 003305 311 DLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKG 390 (832)
Q Consensus 311 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g 390 (832)
..|++.+ +.+|.|. .+.++|+...|..++. +.|
T Consensus 225 -------------------~~L~~~l-~~i~~~~-------------------------~~~~~p~r~~v~~~~~--~~G 257 (439)
T 3j2k_7 225 -------------------LPFIPYL-DNLPNFN-------------------------RSVDGPIRLPIVDKYK--DMG 257 (439)
T ss_pred -------------------hHHHHHH-HhCCCCc-------------------------cCCCCCeEEEEEEEEc--CCC
Confidence 1123322 2355551 1245788888888764 456
Q ss_pred cceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEE--Eeccccccccce-ee
Q 003305 391 RFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA--MVGLDQFITKNA-TL 467 (832)
Q Consensus 391 ~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~--i~gl~~~~~~tg-Tl 467 (832)
. +..+||.+|+|++||.|.++..+ . ..+|.+|+. ...++++|.|||.|+ +.|++..-.+.| +|
T Consensus 258 ~-v~~G~v~~G~l~~Gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl 323 (439)
T 3j2k_7 258 T-VVLGKLESGSIFKGQQLVMMPNK----H-----NVEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFIL 323 (439)
T ss_pred e-EEEEEEEeeEEecCCEEEEccCC----c-----eEEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEEe
Confidence 6 89999999999999999986422 2 268888864 457899999999999 567775544556 77
Q ss_pred ecCC
Q 003305 468 TNEK 471 (832)
Q Consensus 468 ~~~~ 471 (832)
+++.
T Consensus 324 ~~~~ 327 (439)
T 3j2k_7 324 CDPS 327 (439)
T ss_pred cCCC
Confidence 7655
No 15
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.96 E-value=2.5e-29 Score=282.26 Aligned_cols=283 Identities=22% Similarity=0.300 Sum_probs=197.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..||+++||+|||||||+++|++..........-....+|..++|+++|+|+......+.+. ++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------------~~ 66 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA----------------AR 66 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS----------------SC
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC----------------Ce
Confidence 46999999999999999999987532110000001124788899999999999877665543 68
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcccccccCCHHHHHHH
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQT 177 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~~~~~~~~~~~~~~~ 177 (832)
.++|||||||.+|...+.++++.+|++|+|||+++|..+||+++|..+...++| +++++||||+. . +. + .
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~----~-~~-~---~ 137 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV----Q-DS-E---M 137 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC----S-CH-H---H
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC----C-CH-H---H
Confidence 999999999999999999999999999999999999999999999998889999 57899999987 4 22 1 1
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCce
Q 003305 178 FSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKW 257 (832)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~ 257 (832)
++.+.+++...+..+.. .+...++...|+..|+. ..
T Consensus 138 ~~~~~~~~~~~l~~~~~--------~~~~~~~i~~SA~~g~n--------------------------------~~---- 173 (397)
T 1d2e_A 138 VELVELEIRELLTEFGY--------KGEETPIIVGSALCALE--------------------------------QR---- 173 (397)
T ss_dssp HHHHHHHHHHHHHHTTS--------CTTTSCEEECCHHHHHT--------------------------------TC----
T ss_pred HHHHHHHHHHHHHHcCC--------CcccCcEEEeehhhccc--------------------------------cc----
Confidence 22222333333322110 00011222333322210 00
Q ss_pred EecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccc-hHHHHHHH
Q 003305 258 TTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-SSALLEMM 336 (832)
Q Consensus 258 ~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~-~~~LLd~i 336 (832)
.+-| ... +..||+++
T Consensus 174 -------------------~~~~---------------------------------------------~~g~i~~Ll~~l 189 (397)
T 1d2e_A 174 -------------------DPEL---------------------------------------------GLKSVQKLLDAV 189 (397)
T ss_dssp -------------------CTTT---------------------------------------------THHHHHHHHHHH
T ss_pred -------------------CCCc---------------------------------------------cCCcHHHHHHHH
Confidence 0000 000 24578888
Q ss_pred HhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCC
Q 003305 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (832)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~ 416 (832)
.+++|.|. .+.++|+.+.|++++..++.|. ++++||++|+|++||.|++++.+
T Consensus 190 ~~~~p~p~-------------------------~~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~~~~- 242 (397)
T 1d2e_A 190 DTYIPVPT-------------------------RDLEKPFLLPVESVYSIPGRGT-VVTGTLERGILKKGDECEFLGHS- 242 (397)
T ss_dssp HHHSCCCC-------------------------CCTTSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEEETT-
T ss_pred HHhCCCCC-------------------------CCCCCcEEEEEEEEEEeCCceE-EEEEEEeeceEeCCCEEEEeCCC-
Confidence 89999883 1245789999999988888887 99999999999999999987532
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eeecCC
Q 003305 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 471 (832)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~--gl~~~~~~tg-Tl~~~~ 471 (832)
. ....+|.+|... ..++++|.|||+|++. |++..-...| +|+++.
T Consensus 243 ---~---~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 243 ---K---NIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp ---E---EEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred ---C---CeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 0 013688887642 3689999999999886 6643323566 888654
No 16
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.96 E-value=5.8e-29 Score=280.27 Aligned_cols=297 Identities=25% Similarity=0.347 Sum_probs=200.9
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccc-ccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
.....+||+++||+|+|||||+++|++....... ...-....+|..++|+++|+|+......+.+.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~------------- 73 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA------------- 73 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS-------------
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC-------------
Confidence 3456789999999999999999999874211000 00001225788999999999999877666554
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcccccccCCHH
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGE 172 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~~~~~~~~~~ 172 (832)
++.++|||||||.+|...+.++++.+|++|+|+|+++|...|++++|..+...++| +++++||+|+. . +.
T Consensus 74 ---~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~----~-~~- 144 (405)
T 2c78_A 74 ---KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV----D-DP- 144 (405)
T ss_dssp ---SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC----C-CH-
T ss_pred ---CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc----C-cH-
Confidence 68999999999999999999999999999999999999999999999999889999 67899999987 4 22
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCc
Q 003305 173 EAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (832)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~ 252 (832)
+. ++.+.+++...+..+.. .+...++...|+..|++. .+. ...
T Consensus 145 ~~---~~~~~~~~~~~l~~~~~--------~~~~~~~i~~SA~~g~~v--------------------~~~--~~~---- 187 (405)
T 2c78_A 145 EL---LDLVEMEVRDLLNQYEF--------PGDEVPVIRGSALLALEQ--------------------MHR--NPK---- 187 (405)
T ss_dssp HH---HHHHHHHHHHHHHHTTS--------CTTTSCEEECCHHHHHHH--------------------HHH--CTT----
T ss_pred HH---HHHHHHHHHHHHHHhcc--------cccCCCEEEccHHHhhhh--------------------hcc--ccc----
Confidence 11 22222233333322110 000112333444333211 000 000
Q ss_pred CCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHH
Q 003305 253 ATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSAL 332 (832)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 332 (832)
+.. + .+ .|.+.+..|
T Consensus 188 ----~~~---~-------------~~---------------------------------------------~~~~~i~~L 202 (405)
T 2c78_A 188 ----TRR---G-------------EN---------------------------------------------EWVDKIWEL 202 (405)
T ss_dssp ----CCT---T-------------SC---------------------------------------------HHHHHHHHH
T ss_pred ----ccc---C-------------CC---------------------------------------------cccccHHHH
Confidence 000 0 00 011112568
Q ss_pred HHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEc
Q 003305 333 LEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 412 (832)
Q Consensus 333 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~ 412 (832)
++++.+++|.|. .+.++|+.+.|..++..++.|. ++++||++|+|+.||.|+++
T Consensus 203 l~~l~~~lp~p~-------------------------~~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~ 256 (405)
T 2c78_A 203 LDAIDEYIPTPV-------------------------RDVDKPFLMPVEDVFTITGRGT-VATGRIERGKVKVGDEVEIV 256 (405)
T ss_dssp HHHHHHHSCCCC-------------------------CCCSSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEE
T ss_pred HHHHHhhcCCCC-------------------------CCCCCCcEEEEEEEEEcCCCce-EEEEEEecccccCCCEEEEe
Confidence 889999999883 1245789999888888888887 89999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eeecCC
Q 003305 413 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 471 (832)
Q Consensus 413 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~--gl~~~~~~tg-Tl~~~~ 471 (832)
+.+ .. ....+|.+|... ..++++|.|||+|++. |++..-...| +|+++.
T Consensus 257 ~~~----~~--~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 257 GLA----PE--TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp SSS----SS--CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred CCC----CC--eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 532 10 013688888642 3789999999999886 6533223566 888654
No 17
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.96 E-value=1.1e-29 Score=296.61 Aligned_cols=338 Identities=19% Similarity=0.206 Sum_probs=213.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccC--cCCC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG--ERNG 95 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~~~ 95 (832)
+..+|+|+||+|||||||+++|++.... ++ ..+|+|.......+.|............ ..+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~------------~~----e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA------------SR----EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS------------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc------------cc----cCCceecccCeEEEeechhhhhcccccccccccc
Confidence 4579999999999999999999765321 10 0135555544444433210000000000 0011
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcccc---ccc----
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL---ELQ---- 168 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~~---~~~---- 168 (832)
+...++|||||||.+|..++.++++.+|++|+|+|+++|+++||..+|+++...++|+++|+||||+.-. +.+
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchH
Confidence 2336999999999999999999999999999999999999999999999999999999999999998610 000
Q ss_pred ----CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHh
Q 003305 169 ----VDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERL 244 (832)
Q Consensus 169 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~ 244 (832)
...+.+.+.+.+.+.++...+.... +.+. .+. +.. -
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~g--------l~~e----~~~-~l~---------------------------~ 187 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEG--------FESE----RFD-RVT---------------------------D 187 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTT--------CEEE----EGG-GCS---------------------------C
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcC--------cchH----HHH-HHH---------------------------h
Confidence 0113333344443333332221100 0000 000 000 0
Q ss_pred hcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhc
Q 003305 245 WGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQT 324 (832)
Q Consensus 245 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 324 (832)
|+.. -.+.... +... +
T Consensus 188 ~~~~------vpvv~vS------------------------A~tG--~-------------------------------- 203 (594)
T 1g7s_A 188 FASQ------VSIIPIS------------------------AITG--E-------------------------------- 203 (594)
T ss_dssp TTTE------EEEEECC------------------------TTTC--T--------------------------------
T ss_pred ccCc------ceEEEEe------------------------ccCC--C--------------------------------
Confidence 0000 0000000 0000 0
Q ss_pred cccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeee
Q 003305 325 WLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVS 404 (832)
Q Consensus 325 ~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~ 404 (832)
.+..||+++..++|+|.+.. ..+++++|+.++|||+..+++.|. ++++||++|+|+
T Consensus 204 ---GI~eLl~~I~~~~~~~~~~~--------------------l~~~~~~p~~~~V~~~~~d~g~G~-v~~~rV~~G~Lk 259 (594)
T 1g7s_A 204 ---GIPELLTMLMGLAQQYLREQ--------------------LKIEEDSPARGTILEVKEETGLGM-TIDAVIYDGILR 259 (594)
T ss_dssp ---THHHHHHHHHHHHHHHCSGG--------------------GEECTTSBCEEEEEEEEEETTEEE-EEEEEEEESEEE
T ss_pred ---CchhHHHHHHhhccccchhh--------------------hccccCCCceeEEEEEEEeCCcEE-EEEEEEeeCEEe
Confidence 02456666776666553210 124567899999999999998887 999999999999
Q ss_pred CCCEEEEcCCCCCCCCccccceeeeceEEEEe--------cCceeeeCccc--CCCEEEEeccccccccce-eeecCCCC
Q 003305 405 TGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM--------GKKQETVEDVP--CGNTVAMVGLDQFITKNA-TLTNEKEV 473 (832)
Q Consensus 405 ~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~--------g~~~~~v~~a~--aGdI~~i~gl~~~~~~tg-Tl~~~~~~ 473 (832)
+||.|++.+. +.. ...+|.+|+.+. +.+..++++|. ||++|++.||+++ .+| ||+...
T Consensus 260 ~Gd~v~~~~~----~~~---~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~--~~Gd~l~~~~-- 328 (594)
T 1g7s_A 260 KDDTIAMMTS----KDV---ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV--MAGSPLRVVT-- 328 (594)
T ss_dssp TTCEEEEEBS----SSE---EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB--CTTCEEEECS--
T ss_pred eCCEEEECCC----CCc---eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC--CCCCEEEecC--
Confidence 9999997532 121 125999999873 67788999998 9999999999987 567 888765
Q ss_pred Ccc--------cccccccCCCceEEEEEEeCCCCChhHHHHHHHHH
Q 003305 474 DAH--------PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 511 (832)
Q Consensus 474 ~~~--------~~~~~~~~~~Pv~~~~Iep~~~~d~~kl~~~L~~L 511 (832)
... .+..+... .+.+.+.|.+......+.|.++|+++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~-~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 329 DPEKVREEILSEIEDIKID-TDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp SHHHHHHHHHHHHHTTSCB-CSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcccc-cccccEEEEeCCCCCHHHHHHHHHhC
Confidence 210 12223332 56677888888888888888888886
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.96 E-value=1.5e-28 Score=279.07 Aligned_cols=131 Identities=35% Similarity=0.500 Sum_probs=103.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-----eEeecCcccccccCceeeeeeEEEEeec
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYEM 81 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 81 (832)
+..+||+++||+|+|||||+++|++..+.+.... .|. .+++|..++|+++|+|+......+.+.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 4578999999999999999999999876664321 121 146899999999999999887777664
Q ss_pred cchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-------cchhHHHHHHHHHcCCCC-e
Q 003305 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR-P 153 (832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~~p-~ 153 (832)
++.++|||||||.+|..++.++++.+|++|+|+|+++| +..|+++++..+...++| +
T Consensus 83 ---------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~i 147 (435)
T 1jny_A 83 ---------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQL 147 (435)
T ss_dssp ---------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTC
T ss_pred ---------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeE
Confidence 78999999999999999999999999999999999999 888999999998888885 7
Q ss_pred EEEEECCCcc
Q 003305 154 VLTVNKMDRC 163 (832)
Q Consensus 154 ilviNKiD~~ 163 (832)
++++||||+.
T Consensus 148 ivviNK~Dl~ 157 (435)
T 1jny_A 148 IVAVNKMDLT 157 (435)
T ss_dssp EEEEECGGGS
T ss_pred EEEEEcccCC
Confidence 7899999998
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.1e-28 Score=289.30 Aligned_cols=288 Identities=21% Similarity=0.274 Sum_probs=169.8
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCcccccccCceeeeeeEEEEee
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (832)
.+.++||+++||+|+|||||+++|++..+.+... ..|. .+++|..++|+++|+|+......+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3467899999999999999999999988776543 1121 458999999999999999988877765
Q ss_pred ccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-------chhHHHHHHHHHcCCCC-
Q 003305 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR- 152 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-------~~qt~~~~~~~~~~~~p- 152 (832)
++.++|||||||.+|...+..+++.+|++|||||+++|. ..||+.++..+...++|
T Consensus 254 ----------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~ 317 (592)
T 3mca_A 254 ----------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISE 317 (592)
T ss_dssp ---------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCC
T ss_pred ----------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCe
Confidence 689999999999999999999999999999999999864 89999999999999998
Q ss_pred eEEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhh-hhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhh
Q 003305 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIM-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (832)
Q Consensus 153 ~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (832)
+|+|+||||+. .++.+. +..+.+++...+ ..+. +.+...++...|+..|++..-.
T Consensus 318 iIvviNKiDl~----~~~~~~----~~~i~~el~~~l~~~~g--------~~~~~~~ii~iSA~~G~gI~e~-------- 373 (592)
T 3mca_A 318 IVVSVNKLDLM----SWSEDR----FQEIKNIVSDFLIKMVG--------FKTSNVHFVPISAISGTNLIQK-------- 373 (592)
T ss_dssp EEEEEECGGGG----TTCHHH----HHHHHHHHHHHHTTTSC--------CCGGGEEEEEECSSSCSSSCSC--------
T ss_pred EEEEEeccccc----cccHHH----HHHHHHHHHHHHHHhhC--------CCccceEEEEEecccCcccccc--------
Confidence 77899999998 766433 333444444443 2111 1111123445577666533100
Q ss_pred ccCCChHHHHHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHh
Q 003305 232 KFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKD 311 (832)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 311 (832)
.... ..-| |+
T Consensus 374 ----~~~~--~~~w----~~------------------------------------------------------------ 383 (592)
T 3mca_A 374 ----DSSD--LYKW----YK------------------------------------------------------------ 383 (592)
T ss_dssp ----CCCG--GGGT----CC------------------------------------------------------------
T ss_pred ----cccc--cccc----cc------------------------------------------------------------
Confidence 0000 0011 00
Q ss_pred hhhHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCc
Q 003305 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 391 (832)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~ 391 (832)
...|++.+.+++|.+ .+.++|+.+.|..++.. ..|.
T Consensus 384 -----------------g~~Lle~l~~~~pp~--------------------------~~~~~p~r~~v~~v~~~-~~g~ 419 (592)
T 3mca_A 384 -----------------GPTLLSALDQLVPPE--------------------------KPYRKPLRLSIDDVYRS-PRSV 419 (592)
T ss_dssp -----------------SCCHHHHHHTSCCCS--------------------------CTTTSCCEEEEEEEEEE-TTEE
T ss_pred -----------------hHHHHHHHHhhcccc--------------------------ccccccchheeeEEEec-CCeE
Confidence 013566666777622 12357888888888876 5555
Q ss_pred ceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeC-cccCCCEEEE--eccccccccce-ee
Q 003305 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE-DVPCGNTVAM--VGLDQFITKNA-TL 467 (832)
Q Consensus 392 ~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~-~a~aGdI~~i--~gl~~~~~~tg-Tl 467 (832)
+..+||.+|+|++||.|.+++.+ . ..+|..|.. ...+++ +|.|||+|++ .|++..-++.| +|
T Consensus 420 -v~~G~v~~G~l~~Gd~v~i~p~~----~-----~~~V~~i~~----~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl 485 (592)
T 3mca_A 420 -TVTGRVEAGNVQVNQVLYDVSSQ----E-----DAYVKNVIR----NSDPSSTWAVAGDTVTLQLADIEVNQLRPGDIL 485 (592)
T ss_dssp -EEEEEEEESEEETTCEEEETTTT----E-----EEEEEEEEC----SSSCSCCEEETTCEEEEEESSSCGGGCCTTCEE
T ss_pred -EEEEEEeeeeEccCCEEEEccCC----c-----eEEEEEEEE----cCccCcceecCCCEEEEEEccccccccceEEEe
Confidence 88999999999999999986422 1 268888874 346799 9999999985 47654334566 88
Q ss_pred ecCC
Q 003305 468 TNEK 471 (832)
Q Consensus 468 ~~~~ 471 (832)
+++.
T Consensus 486 ~~~~ 489 (592)
T 3mca_A 486 SNYE 489 (592)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 8754
No 20
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=1.4e-26 Score=266.47 Aligned_cols=303 Identities=20% Similarity=0.316 Sum_probs=191.2
Q ss_pred HHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCcccccccCceeeee
Q 003305 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKST 73 (832)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~ 73 (832)
+...+...+...||+++||+|+|||||+++|++..+.+... ..|. .+++|....|+++|+|+...
T Consensus 23 i~~~l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~ 102 (483)
T 3p26_A 23 ISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSIC 102 (483)
T ss_dssp HHHHHHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCC
T ss_pred HHHHHhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEee
Confidence 33444445567899999999999999999999998776542 1121 35789999999999999998
Q ss_pred eEEEEeeccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-------cchhHHHHHHHH
Q 003305 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQA 146 (832)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-------~~~qt~~~~~~~ 146 (832)
...+.+. ++.++|||||||.+|...+..+++.+|++|+|||+++| +..|+++++..+
T Consensus 103 ~~~~~~~----------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~ 166 (483)
T 3p26_A 103 TSHFSTH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA 166 (483)
T ss_dssp EEEEECS----------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH
T ss_pred eEEEecC----------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH
Confidence 8887765 78999999999999999999999999999999999998 678999999998
Q ss_pred HcCCCC-eEEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhH
Q 003305 147 LGERIR-PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNF 225 (832)
Q Consensus 147 ~~~~~p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~ 225 (832)
...+++ +|+++||||+. .++... ++++.+++...+..+.. .+...++...|+..|.+..-
T Consensus 167 ~~~~~~~iIvviNK~Dl~----~~~~~~----~~~i~~~~~~~l~~~g~--------~~~~~~~i~iSA~~g~gi~e--- 227 (483)
T 3p26_A 167 SSLGIHNLIIAMNKMDNV----DWSQQR----FEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYK--- 227 (483)
T ss_dssp HHTTCCCEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHHHHTC--------CGGGEEEEECCSSSCTTSSS---
T ss_pred HHcCCCcEEEEEECcCcc----cchHHH----HHHHHHHHHHHHHHcCC--------CcccceEEEEeeecCCCccc---
Confidence 888875 78899999998 655222 23333333333322111 11111334456665543210
Q ss_pred HHHhhhccCCChHHHHHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcC
Q 003305 226 AKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTM 305 (832)
Q Consensus 226 a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l 305 (832)
+. .......| |.+
T Consensus 228 ---------l~-~~~~~~~w----y~g----------------------------------------------------- 240 (483)
T 3p26_A 228 ---------IE-YTDEVRQW----YNG----------------------------------------------------- 240 (483)
T ss_dssp ---------SC-CCHHHHHH----CCS-----------------------------------------------------
T ss_pred ---------cC-cccccccc----cCC-----------------------------------------------------
Confidence 00 00000112 100
Q ss_pred ChHHHhhhhHHHHHHHHhccccchHHHHHHHHhcCCC--chhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEe
Q 003305 306 KSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPS--PSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKM 383 (832)
Q Consensus 306 ~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPs--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~ 383 (832)
|....+|+.+...+|. |. .+.+.|+...|..+
T Consensus 241 ---------------------~~L~~~L~~i~~~~~~~~p~-------------------------~~~~~p~r~~v~~v 274 (483)
T 3p26_A 241 ---------------------PNLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEI 274 (483)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHTT-------------------------CCSSSCCEEEEEEE
T ss_pred ---------------------CCHHHHHHHHHhhccccccc-------------------------ccCCCceEEEEEEE
Confidence 0012234444444443 21 12457888888887
Q ss_pred eecC---CCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEe----cCceeeeCcccCCCEEEEe-
Q 003305 384 IPAS---DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAMV- 455 (832)
Q Consensus 384 ~~~~---~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~----g~~~~~v~~a~aGdI~~i~- 455 (832)
+..+ ..|. +..+||.+|+|++||.|.++..+ . ..+|.+|.... |.+..++++|.|||+|++.
T Consensus 275 ~~~~~~~g~g~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l 344 (483)
T 3p26_A 275 IPSKKTSNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKL 344 (483)
T ss_dssp EC---CCSCCE-EEEEEEEESEECTTCEEEEETTT----E-----EEEEEEEEETTTC-----CCEESCEETTCEEEEEE
T ss_pred EccCCcCCCce-EEEEEEecceEccCCEEEEeCCC----C-----eEEEEEEEEcCccccccccccccEECCCCEEEEEE
Confidence 7654 2455 89999999999999999986421 2 26888888653 4557899999999999983
Q ss_pred -cc--ccccccce-eeecCC
Q 003305 456 -GL--DQFITKNA-TLTNEK 471 (832)
Q Consensus 456 -gl--~~~~~~tg-Tl~~~~ 471 (832)
+. ++. +.| +|++..
T Consensus 345 ~~~~~~di--~rG~vl~~~~ 362 (483)
T 3p26_A 345 RKAYPEDI--QNGDLAASVD 362 (483)
T ss_dssp ESCCGGGC--CTTCEEECTT
T ss_pred EecccccC--CceEEEEcCC
Confidence 33 443 456 888765
No 21
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.95 E-value=5.2e-27 Score=283.15 Aligned_cols=285 Identities=21% Similarity=0.314 Sum_probs=183.8
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
.....||+++||+|+|||||+++|++..........-....+|..++|+++|+|+....+.+.+.
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~--------------- 357 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP--------------- 357 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS---------------
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC---------------
Confidence 34578999999999999999999987531110000001235788899999999999877666553
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcccccccCCHHHH
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEA 174 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~~~~~~~~~~~~ 174 (832)
++.++|||||||.+|...+.++++.+|++|||||+++|+.+||+++|..+...++| +|+++||||+. . +. +
T Consensus 358 -~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv----~-d~-e- 429 (1289)
T 3avx_A 358 -TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV----D-DE-E- 429 (1289)
T ss_dssp -SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC----C-CH-H-
T ss_pred -CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc----c-ch-h-
Confidence 68999999999999999999999999999999999999999999999988888999 57899999987 4 21 1
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCC
Q 003305 175 YQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (832)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~ 254 (832)
.++.+.+++...+..+.. .+...++...|+..|+.
T Consensus 430 --~le~i~eEi~elLk~~G~--------~~~~vp~IpvSAktG~n----------------------------------- 464 (1289)
T 3avx_A 430 --LLELVEMEVRELLSQYDF--------PGDDTPIVRGSALKALE----------------------------------- 464 (1289)
T ss_dssp --HHHHHHHHHHHHHHHTTS--------CTTTCCEEECCSTTTTT-----------------------------------
T ss_pred --hHHHHHHHHHHHHHhccc--------cccceeEEEEEeccCCC-----------------------------------
Confidence 122222333333322110 00011233344433320
Q ss_pred CceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHHHhhhhHHHHHHHHhccccchHHHHH
Q 003305 255 KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLE 334 (832)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 334 (832)
. .+-| ++ + +..|++
T Consensus 465 -----------g----------~~~w--~e---------------G----------------------------I~eLle 478 (1289)
T 3avx_A 465 -----------G----------DAEW--EA---------------K----------------------------ILELAG 478 (1289)
T ss_dssp -----------C----------CHHH--HH---------------H----------------------------HHHHHH
T ss_pred -----------C----------Cccc--cc---------------c----------------------------chhhHh
Confidence 0 0001 00 0 145788
Q ss_pred HHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCC
Q 003305 335 MMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGP 414 (832)
Q Consensus 335 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~ 414 (832)
.+.+++|.|.. +.++|+.+.|..++..++.|. ++++||++|+|++||.|.+++.
T Consensus 479 aL~~~Ip~P~r-------------------------~~d~Pfr~pId~Vf~i~G~Gt-VvtGrV~sGtLkvGD~V~I~ps 532 (1289)
T 3avx_A 479 FLDSYIPEPER-------------------------AIDKPFLLPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIVGI 532 (1289)
T ss_dssp HHHHTSCCCCC-------------------------GGGSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEESS
T ss_pred HHhhhcCCCcc-------------------------ccccceeeeccccccccCCcE-EEEEEEeccEEecCCEEEEecC
Confidence 88889998831 134688888888877788887 9999999999999999998753
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-eeecCC
Q 003305 415 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 471 (832)
Q Consensus 415 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~--gl~~~~~~tg-Tl~~~~ 471 (832)
+ .. ...+|..|.. ...++++|.|||+|++. |++..-...| +|+++.
T Consensus 533 ~----~~---~~~kVksI~~----~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 533 K----ET---QKSTCTGVEM----FRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp S----SC---EEEEEEEEEC----SSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred C----Cc---eeEEEEEEee----cCceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 2 10 1268888853 23679999999998875 6643333566 888654
No 22
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.95 E-value=6.3e-27 Score=267.71 Aligned_cols=131 Identities=27% Similarity=0.383 Sum_probs=85.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCcccccccCceeeeeeEEEEeec
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYYEM 81 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 81 (832)
+..+||+++||+|||||||+++|++.++.+... ..|. .+++|..++|+++|+|+......+.+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 456899999999999999999999988776431 1232 357899999999999999988777664
Q ss_pred cchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccc-------hhHHHHHHHHHcCCCC-e
Q 003305 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR-P 153 (832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~-------~qt~~~~~~~~~~~~p-~ 153 (832)
++.++|||||||.+|...+.++++.+|++|||||+++|+. +||++++..+...++| +
T Consensus 120 ---------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~i 184 (467)
T 1r5b_A 120 ---------------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHL 184 (467)
T ss_dssp ---------------SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSE
T ss_pred ---------------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEE
Confidence 6899999999999999999999999999999999999973 7999999998889998 7
Q ss_pred EEEEECCCcc
Q 003305 154 VLTVNKMDRC 163 (832)
Q Consensus 154 ilviNKiD~~ 163 (832)
|+++||||+.
T Consensus 185 ivviNK~Dl~ 194 (467)
T 1r5b_A 185 VVVINKMDEP 194 (467)
T ss_dssp EEEEECTTST
T ss_pred EEEEECccCC
Confidence 8999999996
No 23
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=4.4e-26 Score=258.86 Aligned_cols=145 Identities=26% Similarity=0.325 Sum_probs=109.5
Q ss_pred HHHHhhhcc--cCCeeeEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-------eEeecCcccccccC
Q 003305 7 EGLRRIMDF--KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRADEAERG 67 (832)
Q Consensus 7 ~~~~~~~~~--~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-------~~~~d~~~~E~~rg 67 (832)
+.+.+++.. .+..+||+++||+|||||||+++|++..+.+.... .|. ...+|..++|++||
T Consensus 10 ~~i~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rG 89 (434)
T 1zun_B 10 EDILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQG 89 (434)
T ss_dssp ------CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----
T ss_pred hhHHHHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCC
Confidence 344554443 23468999999999999999999999876553321 121 12478889999999
Q ss_pred ceeeeeeEEEEeeccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHH
Q 003305 68 ITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 147 (832)
Q Consensus 68 iTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~ 147 (832)
+|++.....+.+. +..++|||||||.+|...+..+++.+|++|+|+|+++|..+|+++++..+.
T Consensus 90 iTi~~~~~~~~~~----------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~ 153 (434)
T 1zun_B 90 ITIDVAYRYFSTA----------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIAS 153 (434)
T ss_dssp CCCCCEEEEEECS----------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred cEEEeeeeEeecC----------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH
Confidence 9999887766664 789999999999999999999999999999999999999999999998888
Q ss_pred cCCCC-eEEEEECCCcccccccCCH
Q 003305 148 GERIR-PVLTVNKMDRCFLELQVDG 171 (832)
Q Consensus 148 ~~~~p-~ilviNKiD~~~~~~~~~~ 171 (832)
..++| +++++||+|+. .++.
T Consensus 154 ~~~~~~iIvviNK~Dl~----~~~~ 174 (434)
T 1zun_B 154 LLGIKHIVVAINKMDLN----GFDE 174 (434)
T ss_dssp HTTCCEEEEEEECTTTT----TSCH
T ss_pred HcCCCeEEEEEEcCcCC----cccH
Confidence 88886 67899999998 6653
No 24
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.94 E-value=2.2e-26 Score=262.62 Aligned_cols=300 Identities=25% Similarity=0.363 Sum_probs=202.6
Q ss_pred cccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCcccccccCceeeeeeEEEE
Q 003305 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLY 78 (832)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~ 78 (832)
.......||+++||+|+|||||+++|++..+.+... ..|. .+++|..++|+++|+|+......+.
T Consensus 2 ~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~ 81 (458)
T 1f60_A 2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (458)
T ss_dssp CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE
T ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe
Confidence 334456899999999999999999999986655431 1221 1357888999999999999887776
Q ss_pred eeccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccch-------hHHHHHHHHHcCCC
Q 003305 79 YEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-------QTETVLRQALGERI 151 (832)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~-------qt~~~~~~~~~~~~ 151 (832)
+. ++.++|||||||.+|...+.++++.+|++|||||+++|..+ |+++++..+...++
T Consensus 82 ~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v 145 (458)
T 1f60_A 82 TP----------------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV 145 (458)
T ss_dssp CS----------------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC
T ss_pred cC----------------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCC
Confidence 64 78999999999999999999999999999999999999766 99999988888898
Q ss_pred C-eEEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhh
Q 003305 152 R-PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 230 (832)
Q Consensus 152 p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~ 230 (832)
| +|+++||||+. .++.+. +..+.+++..++..+. +.+...++...|+..|++..
T Consensus 146 ~~iivviNK~Dl~----~~~~~~----~~~i~~~~~~~l~~~g--------~~~~~~~~i~vSA~~g~nv~--------- 200 (458)
T 1f60_A 146 RQLIVAVNKMDSV----KWDESR----FQEIVKETSNFIKKVG--------YNPKTVPFVPISGWNGDNMI--------- 200 (458)
T ss_dssp CEEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHHHHT--------CCGGGCCEEECCTTTCBTTT---------
T ss_pred CeEEEEEEccccc----cCCHHH----HHHHHHHHHHHHHHcC--------CCccCceEEEeecccCcCcc---------
Confidence 7 77899999988 655332 2333333333332211 01111134455776665321
Q ss_pred hccCCChHHHHHHhhcCcccCcCCCceEec-CCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHH
Q 003305 231 SKFGVDESKMMERLWGENFFDPATKKWTTK-NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEE 309 (832)
Q Consensus 231 ~~~~i~~~~l~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~e 309 (832)
... ...-| |.. |... +.+. ++
T Consensus 201 ------~~~-~~~~~----~~~----~~~~~~tg~----------------------------------------~~--- 222 (458)
T 1f60_A 201 ------EAT-TNAPW----YKG----WEKETKAGV----------------------------------------VK--- 222 (458)
T ss_dssp ------BCC-SSCTT----CCC----EEEECSSSE----------------------------------------EE---
T ss_pred ------ccc-ccCch----hhc----ccccccccc----------------------------------------cc---
Confidence 000 00112 110 1110 0000 00
Q ss_pred HhhhhHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecCCC
Q 003305 310 KDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDK 389 (832)
Q Consensus 310 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~ 389 (832)
...|++++.. +|.|. .+.+.|+.+.|..++..+..
T Consensus 223 -------------------~~~Ll~~l~~-~~~p~-------------------------~~~~~p~r~~i~~v~~~~g~ 257 (458)
T 1f60_A 223 -------------------GKTLLEAIDA-IEQPS-------------------------RPTDKPLRLPLQDVYKIGGI 257 (458)
T ss_dssp -------------------ESSHHHHHHT-SCCCC-------------------------CCTTSCCEEEEEEEEEETTT
T ss_pred -------------------hHHHHHHhhc-cCCCc-------------------------ccCCCCcEEEEEEEEEeCCC
Confidence 0235555443 45551 12357888888888887788
Q ss_pred CcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe--ccccccccce-e
Q 003305 390 GRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-T 466 (832)
Q Consensus 390 g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~--gl~~~~~~tg-T 466 (832)
|. +..+||.+|+++.||.|.++..+ . ..+|.+|.. ...++++|.|||++++. |++..-.+.| +
T Consensus 258 G~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~v 323 (458)
T 1f60_A 258 GT-VPVGRVETGVIKPGMVVTFAPAG----V-----TTEVKSVEM----HHEQLEQGVPGDNVGFNVKNVSVKEIRRGNV 323 (458)
T ss_dssp EE-EEEEECCBSCBCTTCEEEEETTT----E-----EEEEEEEEE----TTEECSCBCTTCEEEEEESSCCTTTSCTTCE
T ss_pred cE-EEEEEEeCCeEcCCCEEEECCCC----c-----eEEEeEEEE----CCeEEEEEcCCCEEEEEEcCCcccccCceeE
Confidence 87 99999999999999999986421 1 268888874 23679999999998874 6642222456 7
Q ss_pred eecCC
Q 003305 467 LTNEK 471 (832)
Q Consensus 467 l~~~~ 471 (832)
|++.+
T Consensus 324 l~~~~ 328 (458)
T 1f60_A 324 CGDAK 328 (458)
T ss_dssp EEETT
T ss_pred EecCC
Confidence 77654
No 25
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.94 E-value=4.2e-26 Score=252.64 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=94.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
++||+++||+|+|||||+++|+ +||+|++.....+.+. ++
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~----------------~~ 60 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKE----------------GR 60 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSS----------------SS
T ss_pred CCEEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecC----------------Ce
Confidence 4599999999999999999993 5678998887776664 67
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCe-EEEEE-CCCc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVN-KMDR 162 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~-ilviN-KiD~ 162 (832)
.++|||||||.+|..++.++++.+|+||+||| .+|..+||++++..+...++|. ++++| |||+
T Consensus 61 ~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 61 NMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp EEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred EEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 89999999999999999999999999999999 9999999999999999999998 88999 9996
No 26
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.94 E-value=1.1e-25 Score=253.88 Aligned_cols=133 Identities=30% Similarity=0.386 Sum_probs=102.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCc--CC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE--RN 94 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (832)
+..+||+++||+|||||||+++|+ | ...|..++|+++|+|+......+.+...++.. .+... ..
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~-~y~~~~~~~ 73 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALT-----------G--VWTDTHSEELRRGITIKIGFADAEIRRCPNCG-RYSTSPVCP 73 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH-----------T--CCCC--CGGGGSCSSSCCEEEEEEEEECTTTC-CEESSSBCT
T ss_pred CCccEEEEECCCCCCHHHHHHHHh-----------C--CccccChhhhcCCcEEEEeeeeeecccccccc-ccccccccc
Confidence 457899999999999999999994 2 13567788999999998887766653110000 00000 00
Q ss_pred --CC----ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-chhHHHHHHHHHcCCC-CeEEEEECCCcc
Q 003305 95 --GN----EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 163 (832)
Q Consensus 95 --~~----~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~~-p~ilviNKiD~~ 163 (832)
++ ...++|||||||.+|..++.+++..+|++|||||+++|. ++||++++..+...++ |+++++||||+.
T Consensus 74 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 74 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp TTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 11 278999999999999999999999999999999999998 9999999988777776 567899999987
No 27
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.8e-26 Score=269.46 Aligned_cols=295 Identities=21% Similarity=0.318 Sum_probs=201.2
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCcccccccCceeeeeeEEEEe
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYY 79 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~ 79 (832)
......||+++||+|+|||||+++|++..+.+... ..|. .+++|..+.|+++|+|+......+.+
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 34456799999999999999999999887766542 1221 34688899999999999998888776
Q ss_pred eccchhhccccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc-------cchhHHHHHHHHHcCCCC
Q 003305 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR 152 (832)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~~p 152 (832)
. ++.++|||||||.+|...+..+++.+|++|+|||+++| ...|++.++..+...++|
T Consensus 243 ~----------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~ 306 (611)
T 3izq_1 243 H----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH 306 (611)
T ss_dssp S----------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCC
T ss_pred C----------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCC
Confidence 5 78999999999999999999999999999999999987 578999999999888887
Q ss_pred -eEEEEECCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeEeecccceecccCccceeeehhhHHHHhhh
Q 003305 153 -PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (832)
Q Consensus 153 -~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (832)
+|+|+||||+. .++.. ++.++.+++...+..+.. .+....+...|+..|.+.
T Consensus 307 ~iIVVvNKiDl~----~~~~~----~~~ei~~~l~~~l~~~g~--------~~~~~~~i~vSA~tG~gI----------- 359 (611)
T 3izq_1 307 NLIIAMNKMDNV----DWSQQ----RFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGV----------- 359 (611)
T ss_dssp EEEEEEECTTTT----TTCHH----HHHHHHHHHHHHHHHHTC--------CGGGCEEEECCTTTCTTT-----------
T ss_pred eEEEEEeccccc----chhHH----HHHHHHHHHHHHHHhhcc--------cccCccEEeeecccCCCc-----------
Confidence 77899999998 65422 233333333333322111 111113344566555422
Q ss_pred ccCCChHHH--HHHhhcCcccCcCCCceEecCCCcchhhhhHHHHhhchHHHHHHHHhccChhhHHHHHHhcCCcCChHH
Q 003305 232 KFGVDESKM--MERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEE 309 (832)
Q Consensus 232 ~~~i~~~~l--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~e 309 (832)
+.... ...-| |.+
T Consensus 360 ----~el~~~~~~~~W----y~g--------------------------------------------------------- 374 (611)
T 3izq_1 360 ----YKIEYTDEVRQW----YNG--------------------------------------------------------- 374 (611)
T ss_dssp ----SSCTTSCTTCCS----CCS---------------------------------------------------------
T ss_pred ----cccCcccccccc----ccC---------------------------------------------------------
Confidence 10000 00011 110
Q ss_pred HhhhhHHHHHHHHhccccchHHHHHHHHhcCCC--chhhhhhhhcccccCCCCccccceeeccCCCCCeEEEEEEeeecC
Q 003305 310 KDLMGKALMKRVMQTWLPASSALLEMMIFHLPS--PSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPAS 387 (832)
Q Consensus 310 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPs--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~va~VfK~~~~~ 387 (832)
|....+|+.+...+|. |. ...+.|+...|..++..+
T Consensus 375 -----------------~~L~~~L~~l~~~~p~~~p~-------------------------~~~~~p~r~~V~~v~~~~ 412 (611)
T 3izq_1 375 -----------------PNLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEIIPSK 412 (611)
T ss_dssp -----------------CCHHHHHTTSCCCCCCSSSC-------------------------CSCCSCCEEECCEEECCS
T ss_pred -----------------CcHHHHHHHHhhcccccCcc-------------------------cccccchhhheeeeeccC
Confidence 0012234444444444 21 124578888777777654
Q ss_pred ---CCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEe----cCceeeeCcccCCCEEEE--ecc-
Q 003305 388 ---DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAM--VGL- 457 (832)
Q Consensus 388 ---~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~----g~~~~~v~~a~aGdI~~i--~gl- 457 (832)
..|. +..+||.+|+|++||.|.++..+ . ..+|.+|.... |....++++|.|||+|++ .|+
T Consensus 413 ~~~g~g~-v~~G~V~~G~lk~Gd~v~~~p~~----~-----~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~ 482 (611)
T 3izq_1 413 KTSNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAY 482 (611)
T ss_dssp SSCSSSS-EEEEEEEESEECTTCEEEETTTT----E-----EEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCC
T ss_pred ccCCCee-EEEEEEEeceeccCCEEEEecCC----c-----eEEEEEEEEcccccccccccccceecCCCcceEEeeecc
Confidence 3455 89999999999999999986422 2 26888887652 556789999999999998 343
Q ss_pred -ccccccce-eeecCC
Q 003305 458 -DQFITKNA-TLTNEK 471 (832)
Q Consensus 458 -~~~~~~tg-Tl~~~~ 471 (832)
++. ..| +|++..
T Consensus 483 ~~di--~rGdvl~~~~ 496 (611)
T 3izq_1 483 PEDI--QNGDLAASVD 496 (611)
T ss_dssp TTSC--CTTCEEBCST
T ss_pred HhhC--cceEEccCCC
Confidence 343 556 888765
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=1.8e-24 Score=243.78 Aligned_cols=133 Identities=27% Similarity=0.366 Sum_probs=96.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCc--CC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE--RN 94 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (832)
+...||+++||+|||||||+++|. | ...|...+|+++|+|+......+.+...+.. ..+... ..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~-~~y~~~~~~~ 71 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT-----------G--VWTDRHSEELRRGISIRLGYADCEIRKCPQC-GTYTTKPRCP 71 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH-----------S--CCCCC-------CCCCCCEEEEEEEEECTTT-CCEESSSBCT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh-----------C--CccccCcccccCCcEEEeccccccccccccc-cccccccccc
Confidence 456899999999999999999994 2 1356678899999999877665544210000 000000 00
Q ss_pred --C----CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-chhHHHHHHHHHcCCC-CeEEEEECCCcc
Q 003305 95 --G----NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 163 (832)
Q Consensus 95 --~----~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~~-p~ilviNKiD~~ 163 (832)
+ ....++|||||||.+|..++.+++..+|++|||+|+++|. .+||.+++..+...++ |+++++||+|+.
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 1 1378999999999999999999999999999999999998 8999999888777776 577899999987
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.92 E-value=1.7e-26 Score=263.12 Aligned_cols=114 Identities=28% Similarity=0.420 Sum_probs=97.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+.++|+++||+|||||||+++|+...-. ....+|+|+......+.+. +
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~----------------~~e~~GIT~~i~~~~v~~~----------------~ 50 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA----------------SGEAGGITQHIGAYHVETE----------------N 50 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS----------------BTTBCCCCCCSSCCCCCTT----------------S
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc----------------cccCCCeeEeEEEEEEEEC----------------C
Confidence 5689999999999999999999653211 1123678887766555443 5
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..++|||||||.+|...+.++++.+|++|||+|+++|+.+||.++|..+...++|+++++||+|+.
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEecccc
Confidence 689999999999999999999999999999999999999999999999999999999999999998
No 30
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=7.1e-25 Score=251.33 Aligned_cols=122 Identities=34% Similarity=0.450 Sum_probs=93.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..||+++||+|+|||||+++|+... ....+|..++|+++|+|+......+.+.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~---------------- 71 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFKLE---------------- 71 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEET----------------
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCC---------cccccccccccccCccEEecceEEEEEC----------------
Confidence 345799999999999999999995432 1235788899999999999888877775
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++.++|||||||.+|...+.++++.+|++|+|||+++|+++||.+++..+...++|.++++||+|+.
T Consensus 72 ~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSS
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999987
No 31
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=1.8e-23 Score=235.11 Aligned_cols=133 Identities=22% Similarity=0.233 Sum_probs=94.3
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc--eEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~--~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
+...+|+++||+|||||||+++|+....... .|. .........+..++++.........+. ...
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 71 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKK---LGYAETNIGVCESCKKPEAYVTEPSCKSCGSD-----------DEP 71 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSS---SEEEEEEEEECTTSCTTTTEESSSCCGGGTCC-----------SCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccc---cCccccceeeccccccccceeccccccccccc-----------ccc
Confidence 3457999999999999999999965321111 111 111111223334555443322111111 001
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-chhHHHHHHHHHcCCC-CeEEEEECCCcc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~~-p~ilviNKiD~~ 163 (832)
.....++|||||||.+|...+..+++.+|++|+|+|+.+|. ..|+++++..+...+. |+++++||+|+.
T Consensus 72 ~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 72 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 12378999999999999999999999999999999999998 8999999988887776 788899999987
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.91 E-value=2.3e-25 Score=255.93 Aligned_cols=115 Identities=30% Similarity=0.415 Sum_probs=95.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+...|+++||+|||||||+++|....-.. +...|+|.......+.+. ++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~----------------~~~~giT~~i~~~~v~~~---------------~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA----------------MEAGGITQHIGAFLVSLP---------------SG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH----------------SSSCCBCCCTTSCCBCSS---------------CS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc----------------ccCCceeEEEeEEEEEeC---------------CC
Confidence 34679999999999999999996543211 122356666554444332 25
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..++|||||||.+|...+.++++.+|++|||+|+++|+.+||..+|..+...++|+++++||+|+.
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGT
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999997
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.61 E-value=2.2e-15 Score=162.21 Aligned_cols=116 Identities=23% Similarity=0.195 Sum_probs=89.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|++|+|||||+++|++....+....++ .|.......+.+ +
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~---------------tTr~~i~~i~~~----------------~ 53 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ---------------TTRKRLRGILTE----------------G 53 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC---------------CCCSCEEEEEEE----------------T
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCC---------------ceeEEEEEEEEe----------------C
Confidence 445789999999999999999998765433221122 121111111223 2
Q ss_pred ceEEEEEeCCCCCC--------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcC--CCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~d--------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~~p~ilviNKiD~~ 163 (832)
+.+++||||||+.+ |...+..+++.+|++++|+|++++....+..+++++... ++|+++|+||+|+.
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 78999999999988 677788899999999999999999888888888888776 89999999999987
No 34
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.57 E-value=3.6e-15 Score=146.83 Aligned_cols=115 Identities=27% Similarity=0.416 Sum_probs=89.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+...-... ...++|.......+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~---------------- 53 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ----------------EAGGITQHIGAYQVTVN---------------- 53 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCS----------------SCCSSSTTCCCCEEEET----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccC----------------CCCceeEeeeEEEEEeC----------------
Confidence 4567999999999999999999965321110 01123333333334443
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+..+++|||||+.+|.......++.+|++++|+|++++...++...+..+...++|+++|+||+|+.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKP 120 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSS
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCC
Confidence 6789999999999998888888899999999999999888888888888877889999999999998
No 35
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.56 E-value=2.4e-14 Score=154.72 Aligned_cols=118 Identities=22% Similarity=0.241 Sum_probs=89.2
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
+...-.|+++|++|+|||||+++|+.....+..... +.|.......+.+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~---------------~tT~~~~~~~~~~~--------------- 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKA---------------GTTRMRVLGVKNIP--------------- 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS---------------CCCCSCEEEEEEET---------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCC---------------CceeeEEEEEEecC---------------
Confidence 344568999999999999999999765433222112 22333222222221
Q ss_pred CceEEEEEeCCCCCCcH----------HHHHHHhhccCcEEEEEcCCCccchhHHHH-HHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFS----------SEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~----------~~~~~~l~~~D~ailVvda~~g~~~qt~~~-~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.++||||||+.++. ..+..+++.+|++++|+|++++...++..+ +..+...++|+++|+||+|+.
T Consensus 57 ~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 57 NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 26899999999997654 667889999999999999999999999888 667777789999999999986
No 36
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.55 E-value=8e-15 Score=166.34 Aligned_cols=115 Identities=23% Similarity=0.318 Sum_probs=86.4
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|++|+|||||+++|+.....+.. ...|+|.+.....+.+. +
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~d~~~~~~~~~----------------~ 222 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS---------------NVAGTTRDAVDTSFTYN----------------Q 222 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------------CCEEEEET----------------T
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec---------------CCCCceeeeeEEEEEEC----------------C
Confidence 4679999999999999999999764332211 12356666655566664 6
Q ss_pred eEEEEEeCCCCCC----------cHHH-HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVD----------FSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~d----------f~~~-~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..++||||||+.+ |... ...+++.+|++++|+|++++...|+..++..+...++|+++|+||+|+.
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 7899999999844 3222 3468899999999999999999999988888888899999999999987
No 37
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.55 E-value=3.8e-14 Score=149.32 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=84.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+|+|++|+|||||+++|++....+... + .+++|.......+.|.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~--~------------~~~~t~~~~~~~~~~~---------------- 69 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL--G------------SQTLTKTCSKSQGSWG---------------- 69 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT--T------------SCCCCCSCEEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC--C------------CCceeeeeEEEEEEeC----------------
Confidence 456799999999999999999998765433221 0 1123444444455554
Q ss_pred ceEEEEEeCCCCCCcH-----------HHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcC-----CCCeEEEEE-C
Q 003305 97 EYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVN-K 159 (832)
Q Consensus 97 ~~~i~liDTPGh~df~-----------~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~-----~~p~ilviN-K 159 (832)
++.++||||||+.++. ..+..+++.+|++|+|+|++. +..+...+++.+... +.|+++++| |
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK 148 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHK 148 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcc
Confidence 7899999999998863 223346788999999999986 777777777776654 678888888 9
Q ss_pred CCcc
Q 003305 160 MDRC 163 (832)
Q Consensus 160 iD~~ 163 (832)
+|+.
T Consensus 149 ~Dl~ 152 (260)
T 2xtp_A 149 EDLN 152 (260)
T ss_dssp GGGT
T ss_pred cccC
Confidence 9997
No 38
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.54 E-value=7.5e-15 Score=158.17 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=84.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+|+||+|+|||||+++|++....+....++ .|.......+.+. +
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~---------------tTr~~~~gi~~~~----------------~ 55 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ---------------TTRHRIVGIHTEG----------------A 55 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSS---------------CCSSCEEEEEEET----------------T
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCC---------------cceeeEEEEEEEC----------------C
Confidence 34689999999999999999997653222111111 1221111122332 6
Q ss_pred eEEEEEeCCCCC---------CcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHV---------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~---------df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..++++||||+. +|...+..+++.+|++++|+|+++ +..+++.+++.+...+.|.++++||+|+.
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 799999999998 344445677889999999999988 99999999888887889999999999987
No 39
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.52 E-value=6.3e-14 Score=135.32 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=83.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+++|+++|+.|+|||||+++|+........ ...++|.......+.+. +.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----------------~~ 49 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVA---------------DVPGVTRDLKEGVVETD----------------RG 49 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEET----------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeecc---------------CCCCceecceEEEEEeC----------------Cc
Confidence 479999999999999999999764321111 11123333333334343 56
Q ss_pred EEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.+ +...+...++.+|++++|+|++++.......+.+.+...+.|+++++||+|+.
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 899999999987 45566778899999999999999887777777777767789999999999987
No 40
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.51 E-value=8.2e-14 Score=145.69 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=88.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|++|+|||||+++|++....+.... ..|.|.......+.+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~~---------------- 68 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLG--------------ATSVTRACTTGSRRWD---------------- 68 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEET----------------
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCC--------------CCCccccEEEEEEEEC----------------
Confidence 3457999999999999999999977654332210 1123444444444554
Q ss_pred ceEEEEEeCCCC--------CCcHHHHHHHh----hccCcEEEEEcCCCccchhHHHHHHHHHcC------CCCeEEEEE
Q 003305 97 EYLINLIDSPGH--------VDFSSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE------RIRPVLTVN 158 (832)
Q Consensus 97 ~~~i~liDTPGh--------~df~~~~~~~l----~~~D~ailVvda~~g~~~qt~~~~~~~~~~------~~p~ilviN 158 (832)
+..++||||||. .+|..++.+++ +.+|++|+|+|+.. ....+..+++.+... +.|+++|.|
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 789999999998 66777777777 89999999999985 666666666665543 678999999
Q ss_pred CCCcccccccCCHHHHH
Q 003305 159 KMDRCFLELQVDGEEAY 175 (832)
Q Consensus 159 KiD~~~~~~~~~~~~~~ 175 (832)
|+|+. +.+.++..
T Consensus 148 K~Dl~----~~~~~~~l 160 (247)
T 3lxw_A 148 KEDLA----GGSLHDYV 160 (247)
T ss_dssp GGGGT----TCCHHHHH
T ss_pred hHhcC----CCCHHHHH
Confidence 99998 66655544
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.49 E-value=7.1e-14 Score=143.20 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=82.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcC-ccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
....+|+++|+.|+|||||+++|+.... .... ...|.|.......+.. .
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~---------------~~~~~t~~~~~~~~~~---------------~ 76 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFAS---------------KTPGRTQHINYFSVGP---------------A 76 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTT---------------CCCCSCCCEEEEEESC---------------T
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeec---------------CCCCcccceEEEEecC---------------C
Confidence 3567999999999999999999965431 1111 1113344333222221 1
Q ss_pred CceEEEEEeCCCCCCc----------HHHHHHHhh---ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCc
Q 003305 96 NEYLINLIDSPGHVDF----------SSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~df----------~~~~~~~l~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~ 162 (832)
++..++||||||+.+- ...+...++ .+|++++|+|+.++.......+++.+...++|+++|+||+|+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 3578999999997442 333334444 478899999999998888888888888889999999999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 157 ~ 157 (223)
T 4dhe_A 157 L 157 (223)
T ss_dssp S
T ss_pred C
Confidence 6
No 42
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.48 E-value=8.4e-14 Score=158.87 Aligned_cols=115 Identities=23% Similarity=0.324 Sum_probs=88.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|++|+|||||+++|+......... ..|+|.......+.+. +
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~ 242 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN---------------VAGTTRDAVDTSFTYN----------------Q 242 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------------CTTSEEEEET----------------T
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCC---------------CCCeEEEEEEEEEEEC----------------C
Confidence 46799999999999999999997543322221 1245555544555554 6
Q ss_pred eEEEEEeCCC----------CCCcHHH-HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPG----------HVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPG----------h~df~~~-~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..++|||||| ++.|... ...+++.+|++|+|+|++++...++..++.++...++|+++|+||+|+.
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 7899999999 4555443 4468899999999999999999999999999989999999999999987
No 43
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.48 E-value=2.6e-14 Score=160.14 Aligned_cols=115 Identities=22% Similarity=0.205 Sum_probs=87.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
...++|+|+|+.|+|||||+++|+.... ...+..+|+|+......+.+. .
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~---------------~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELH---------------P 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEET---------------T
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEEC---------------C
Confidence 4578999999999999999999943321 122344567877777776664 1
Q ss_pred ceEEEEEeCCCCCCcHH-------HHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~-------~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
...++|||||||.+|.. .+..+++.+|++|+|+|+ +...++..++..+...++|+++|+||+|+.
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 34899999999998753 367788899999999999 788899999999989999999999999998
No 44
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.45 E-value=2.9e-13 Score=135.76 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=81.6
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
......+|+++|+.|+|||||+++|+...-.. .++.+ |+......+.+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~----------~~~~~-------t~~~~~~~~~~--------------- 60 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSS----------KHITA-------TVGYNVETFEK--------------- 60 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC--------------CCCC-------CSSEEEEEEEE---------------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcc----------ccccc-------ccceeEEEEEe---------------
Confidence 34567899999999999999999994322111 01111 22222222333
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHcC-----------CCCeEEEEECCCc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE-----------RIRPVLTVNKMDR 162 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~~-----------~~p~ilviNKiD~ 162 (832)
+...++||||||+.+|...+...++.+|++|+|+|++++...... ..+..+... ++|+++|+||+|+
T Consensus 61 -~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 139 (199)
T 4bas_A 61 -GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA 139 (199)
T ss_dssp -TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTS
T ss_pred -CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCC
Confidence 378999999999999999888999999999999999987654433 333444333 7899999999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 140 ~ 140 (199)
T 4bas_A 140 A 140 (199)
T ss_dssp T
T ss_pred C
Confidence 7
No 45
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.45 E-value=3.2e-13 Score=134.98 Aligned_cols=128 Identities=20% Similarity=0.163 Sum_probs=82.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||++.|........ .+.. ..... ....|+........+ ...+++
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~---~~~~-~~~~~----~~~~t~~~~~~~~~~-----------~~~~~~ 72 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGR---KGEM-VSLAT----EDERTLFFDFLPLDI-----------GEVKGF 72 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGG---BCCC-EEEEC----SSCEEEEEEECCSSC-----------CCSSSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccc---cccc-ccccc----ccccceeeeeccccc-----------ccccCC
Confidence 3457999999999999999976643221110 0000 00000 001122211111111 012345
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc---------CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---------ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~---------~~~p~ilviNKiD~~ 163 (832)
...++||||||+.+|.......++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+.
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp EEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred ceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 7889999999999999999999999999999999998766665554443322 578999999999987
No 46
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.45 E-value=2.5e-13 Score=154.14 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=84.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
++|+++|.+|+|||||+++|+.....+... ..|+|.+.....+.|. +..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~---------------~~g~T~d~~~~~~~~~----------------~~~ 50 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVED---------------EEGVTRDPVQDTVEWY----------------GKT 50 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecC---------------CCCCccceeeEEEEEC----------------CeE
Confidence 579999999999999999996543322211 1256666666666775 678
Q ss_pred EEEEeCCCCCC---------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~d---------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+.+|||||... +...+..+++.+|++++|+|+..|.+.....+.+.+...++|+++|+||+|+.
T Consensus 51 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 51 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred EEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 99999999875 24456778999999999999999998888777777777789999999999975
No 47
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.44 E-value=2.1e-13 Score=143.25 Aligned_cols=111 Identities=22% Similarity=0.265 Sum_probs=82.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+++|+++|++|+|||||+++|....- .+. ...|+|+......+.+. +.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~----------~v~------~~pg~Tv~~~~~~~~~~----------------~~ 48 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ----------RVG------NWPGVTVEKKTGEFLLG----------------EH 48 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE----------EEE------ECTTSSSEEEEEEEEET----------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC----------Ccc------CCCCceEEEEEEEEEEC----------------Ce
Confidence 47899999999999999999954321 111 11366777666666664 67
Q ss_pred EEEEEeCCCCCCcHHH----------HHHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSE----------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~----------~~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++||||||+.+|... ....+ +.+|++|+|+|++. ......++.++...++|+++++||+|+.
T Consensus 49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 49 LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 9999999999988641 22344 78999999999987 2344456677778899999999999976
No 48
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=135.26 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=82.9
Q ss_pred cccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
.......+|+++|+.|+|||||+++|+.... ..+...+++.......+.+.
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~------------- 54 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTF----------------SGSYITTIGVDFKIRTVEIN------------- 54 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEET-------------
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCC----------------CCccCCCceeEEEEEEEEEC-------------
Confidence 3455678999999999999999999943211 01111223333333333332
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH--cCCCCeEEEEECCCcc
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
+..+.+++|||||+.+|.......++.+|++++|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 55 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 55 -GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp -TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred -CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 2247899999999999988888899999999999999986555443333 2222 2357889999999976
No 49
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.44 E-value=1e-12 Score=133.69 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=83.5
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
...+..+|+++|+.|+|||||+++|+...- .. . ..|+......+.+. .
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~--~~---------~--------~~~~~~~~~~~~~~-------------~ 50 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQY--RD---------T--------QTSITDSSAIYKVN-------------N 50 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCC--CC---------B--------CCCCSCEEEEEECS-------------S
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCc--cc---------c--------cCCcceeeEEEEec-------------C
Confidence 344567999999999999999999976431 10 0 01111111223332 1
Q ss_pred CCceEEEEEeCCCCCCcHH-HHHHHhhccCcEEEEEcCCCccchhHH---HHHHHHH------cCCCCeEEEEECCCccc
Q 003305 95 GNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTE---TVLRQAL------GERIRPVLTVNKMDRCF 164 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~-~~~~~l~~~D~ailVvda~~g~~~qt~---~~~~~~~------~~~~p~ilviNKiD~~~ 164 (832)
.+...++||||||+.+|.. .+...++.+|++|+|+|+++ ...... ..|.... ..++|+++|+||+|+.
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~- 128 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA- 128 (214)
T ss_dssp TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST-
T ss_pred CCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC-
Confidence 1257899999999999988 56667899999999999987 222222 2232221 2368999999999987
Q ss_pred ccccC-CHHHHHHHHHHHHHH
Q 003305 165 LELQV-DGEEAYQTFSRVVEN 184 (832)
Q Consensus 165 ~~~~~-~~~~~~~~~~~~~~~ 184 (832)
.. ..++..+.+++.+..
T Consensus 129 ---~~~~~~~~~~~l~~~l~~ 146 (214)
T 2fh5_B 129 ---MAKSAKLIQQQLEKELNT 146 (214)
T ss_dssp ---TCCCHHHHHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHHHHHHH
Confidence 43 345555555555543
No 50
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.44 E-value=5.8e-13 Score=140.53 Aligned_cols=116 Identities=20% Similarity=0.178 Sum_probs=77.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|++|+|||||+++|++....... ...+.|.......+.+.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~---------------- 82 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS---------------PFQAEGLRPVMVSRTMG---------------- 82 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC---------------SSCC-CCCCEEEEEEET----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC---------------CCCCcceeeEEEEEEEC----------------
Confidence 45689999999999999999999765432111 11234554444555554
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhh---------ccCcEEEEEcCCC-ccchhHHHHHHHHHcC---C--CCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALR---------ITDGALVVVDCIE-GVCVQTETVLRQALGE---R--IRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~---------~~D~ailVvda~~-g~~~qt~~~~~~~~~~---~--~p~ilviNKiD 161 (832)
+..++||||||+.+|.......++ .+|++++|+|... ........+++.+... + .|+++++||+|
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D 162 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ 162 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence 679999999999987543322222 7899999987764 2333334444444332 2 38899999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 163 l~ 164 (262)
T 3def_A 163 FS 164 (262)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 51
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.43 E-value=7.3e-13 Score=130.01 Aligned_cols=119 Identities=19% Similarity=0.175 Sum_probs=81.5
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
......+|+++|+.|+|||||+++|+...-.. +....++.......+.+.
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~-------------- 52 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVD-------------- 52 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEET--------------
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeEEEEEEEEC--------------
Confidence 34456799999999999999999996542110 001111222222222232
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---c----CCCCeEEEEECCCcc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---G----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~----~~~p~ilviNKiD~~ 163 (832)
++...+.||||||+.+|.......++.+|++++|+|+++....+....| ..+. . .++|+++++||+|+.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 2346899999999999998888899999999999999987554433222 2221 1 577999999999986
No 52
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.43 E-value=3.5e-13 Score=133.59 Aligned_cols=118 Identities=21% Similarity=0.175 Sum_probs=82.9
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
.+...+|+++|+.|+|||||+++|+........ ...++.......+.+. +
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~ 56 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS----------------NHTIGVEFGSKIINVG--------------G 56 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC----------------CCCSEEEEEEEEEEET--------------T
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEEC--------------C
Confidence 355689999999999999999999754321110 0112222222222222 2
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH----HHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~----~~~~~~~~p~ilviNKiD~~ 163 (832)
+...+.||||||+.+|...+...++.+|++|+|+|+++....+....| ......++|+++++||+|+.
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 346899999999999999999999999999999999986554443333 22224578999999999986
No 53
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.43 E-value=4.6e-13 Score=133.90 Aligned_cols=114 Identities=13% Similarity=0.189 Sum_probs=78.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+...... . + ....|.|...... .+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~-------~------~~~~~~t~~~~~~--~~----------------- 67 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLA-R-------T------SSKPGKTQTLNFY--II----------------- 67 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEE--EE-----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-c-------c------CCCCCceeeEEEE--EE-----------------
Confidence 457899999999999999999996532100 0 0 0011223322211 11
Q ss_pred ceEEEEEeCCCC----------CCcHHHHHHHhhcc---CcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGH----------VDFSSEVTAALRIT---DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh----------~df~~~~~~~l~~~---D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+..+++|||||+ ..|...+...++.+ |++++|+|++++.......+++.+...+.|+++|+||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 236899999994 44444455555655 99999999999988888777777777889999999999987
No 54
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.43 E-value=3.4e-13 Score=134.83 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=84.3
Q ss_pred hhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccC
Q 003305 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (832)
Q Consensus 12 ~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (832)
+....+...+|+++|+.|+|||||+++|+...-.. +....++.......+.+.
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~----------- 61 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE----------------SYISTIGVDFKIRTIELD----------- 61 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCS----------------CCCCCSSEEEEEEEEEET-----------
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCCcccceEEEEEEEEC-----------
Confidence 33334557899999999999999999997532111 111122333333333332
Q ss_pred cCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
+..+.+.||||||+.+|.......++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 62 ---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 ---GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp ---TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred ---CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 2347899999999999999999999999999999999986544333222 2222 3378999999999986
No 55
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.43 E-value=6.6e-13 Score=130.60 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=81.4
Q ss_pred cccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
....+..+|+++|+.|+|||||+++|+...-. . ++.+ ..+.... ..+.+.
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~---------~~~~---t~~~~~~---~~~~~~------------- 53 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFV--S---------DYDP---TIEDSYT---KICSVD------------- 53 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--S---------SCCT---TCCEEEE---EEEEET-------------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCc--c---------ccCC---CcCceEE---EEEEEC-------------
Confidence 34566789999999999999999999765211 0 0000 0011111 112221
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+....++||||||+.+|.......++.+|++++|+|+++....... .+++.....++|+++|+||+|+.
T Consensus 54 -~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 54 -GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp -TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred -CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2356899999999999988888999999999999999985433322 22233334578999999999986
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.43 E-value=5.2e-13 Score=131.46 Aligned_cols=119 Identities=19% Similarity=0.175 Sum_probs=71.0
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
.....+|+++|+.|+|||||+++|+...-... ....++.......+.+. ++
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------------~~ 55 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ----------------YKATIGADFLTKEVTVD-------------GD 55 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTT----------------C---CCCSCEEEEECCS-------------SS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcc----------------cCCccceEEEEEEEEEc-------------CC
Confidence 45678999999999999999999976431100 00011111111122221 12
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---c----CCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---G----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~----~~~p~ilviNKiD~~ 163 (832)
....+.||||||+.+|.......++.+|++|+|+|+++.........| ..+. . .++|+++++||+|+.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 357899999999999998888889999999999999987554443333 2221 1 578999999999985
No 57
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.43 E-value=3.4e-13 Score=143.06 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=83.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
++++|+++|++|+|||||+++|..... ......|+|+......+.+. +
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~----------------~~~~~~~~t~~~~~~~~~~~----------------~ 49 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ----------------HVGNWPGVTVEKKEGIMEYR----------------E 49 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE----------------EEEECTTSSCEEEEEEEEET----------------T
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeEEEeeEEEEEEC----------------C
Confidence 357999999999999999999954321 11122356777666666665 6
Q ss_pred eEEEEEeCCCCCCcHHH------HHHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCC-CCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSE------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~------~~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~-~p~ilviNKiD~~ 163 (832)
..+++|||||+.+|... ....+ ..+|++++|+|++.+ .+....+.++...+ +|+++|+||+|+.
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 78999999999988652 22333 569999999999985 34555666777777 9999999999965
No 58
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.43 E-value=1.4e-12 Score=127.98 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=81.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|+.|+|||||+++|+........ . ...|.+..... +.+ ++.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~------------~t~~~~~~~~~--~~~--------------~~~ 62 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--P------------HTIGVEFGTRI--IEV--------------SGQ 62 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--T------------TSCCCCEEEEE--EEE--------------TTE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--C------------CccceEEEEEE--EEE--------------CCe
Confidence 45689999999999999999999764321100 0 00112222221 222 123
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|...+...++.+|++|+|+|+++.........| ..+. ..+.|+++++||+|+.
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 57899999999999999999999999999999999987554443332 2222 3578899999999986
No 59
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.42 E-value=5e-13 Score=130.32 Aligned_cols=111 Identities=19% Similarity=0.135 Sum_probs=80.0
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|+.|+|||||+++|+...-. ... -|+......+.+. +
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~------------~~~-------~t~~~~~~~~~~~----------------~ 50 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV------------TTI-------PTIGFNVETVTYK----------------N 50 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC------------CCC-------CCSSEEEEEEEET----------------T
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC------------CcC-------CcCccceEEEEEC----------------C
Confidence 4579999999999999999999653210 000 1222222334443 6
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
..+.+|||||+.+|...+...++.+|++++|+|+++....... ..+..... .+.|+++++||+|+.
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 8999999999999988888899999999999999987443332 22233322 578999999999987
No 60
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.42 E-value=1.2e-12 Score=126.85 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=77.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|+++|+.|+|||||+++|+...-. ++.+ |+......+.+ ++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~------------~~~~-------t~~~~~~~~~~----------------~~~~~ 46 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV------------TTIP-------TIGFNVETVEY----------------KNISF 46 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS------------CCCC-------CSSCCEEEEEC----------------SSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC------------cccC-------cCceeEEEEEE----------------CCEEE
Confidence 7999999999999999999764311 0111 22212222333 26899
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
++|||||+.+|...+...++.+|++++|+|+++.-..... ..+..... .+.|+++|+||+|+.
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 9999999999998888899999999999999986443332 22333322 378999999999987
No 61
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.42 E-value=1.5e-12 Score=128.99 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=83.4
Q ss_pred HHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhcc
Q 003305 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKS 88 (832)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (832)
++.+...+....+|+++|+.|+|||||+++|.... . ..+ ....|.+ ...+.+.
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~--~----------~~~---~~t~g~~----~~~~~~~-------- 58 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED--I----------SHI---TPTQGFN----IKSVQSQ-------- 58 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSC--C----------EEE---EEETTEE----EEEEEET--------
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCC--C----------Ccc---cCcCCeE----EEEEEEC--------
Confidence 34444444567899999999999999999994321 0 000 1111221 1223332
Q ss_pred ccCcCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHH----cCCCCeEEEEECCCcc
Q 003305 89 YKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
+..+.+|||||+..|...+...++.+|++++|+|+++....... ..+.... ..+.|+++++||+|+.
T Consensus 59 --------~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 59 --------GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp --------TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 67899999999999999889999999999999999986544332 2223222 2468999999999987
No 62
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.42 E-value=2e-12 Score=127.81 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=80.2
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~ 94 (832)
.....+|+++|+.|+|||||+++|+...-.. ++.+ |+.... ....+ +
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-----------~~~~-------t~~~~~~~~~~~--------------~ 62 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVD-----------DYDP-------TIEDSYLKHTEI--------------D 62 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------CCCT-------TCCEEEEEEEEE--------------T
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------CCCC-------CccceeEEEEEe--------------C
Confidence 3456799999999999999999997532110 0000 111111 11111 2
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+....+++|||||+.+|.......++.+|++++|+|+++....+.. .+.+.....++|+++|+||+|+.
T Consensus 63 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 63 NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred CcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 2356788899999999999899999999999999999986433322 22233334678999999999986
No 63
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.42 E-value=2.3e-12 Score=124.74 Aligned_cols=115 Identities=20% Similarity=0.223 Sum_probs=75.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|+.|+|||||+++|+...-.... .+ ..+.+. ...+.+ +++.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~------------t~~~~~---~~~~~~--------------~~~~ 51 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EP------------TKADSY---RKKVVL--------------DGEE 51 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CT------------TCCEEE---EEEEEE--------------TTEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCC--CC------------CcceEE---EEEEEE--------------CCEE
Confidence 3579999999999999999999764311000 00 000111 111222 1235
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHH-----HHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-----LRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~-----~~~~~~~~~p~ilviNKiD~~ 163 (832)
+.+.||||||+.+|.......++.+|++++|+|+++......... .+.....++|+++++||+|+.
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 689999999999999999999999999999999997544333222 222223478999999999986
No 64
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.41 E-value=8.4e-13 Score=131.58 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=80.4
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|+.|+|||||+++|+...-.. ++. -|+......+.+ ++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------~~~-------~t~~~~~~~~~~----------------~~ 66 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE-----------DMI-------PTVGFNMRKITK----------------GN 66 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------SCC-------CCCSEEEEEEEE----------------TT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC-----------ccC-------CCCceeEEEEEe----------------CC
Confidence 45799999999999999999996542110 000 122222222333 27
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
..++||||||+.+|...+...++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 8999999999999999899999999999999999875443332 22333322 578999999999987
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.41 E-value=6.9e-13 Score=132.78 Aligned_cols=117 Identities=16% Similarity=0.198 Sum_probs=80.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|+.|+|||||+++|+..... .+....++.......+.+. ++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~--------------~~ 73 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELR--------------GK 73 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEEC--------------Ce
Confidence 34578999999999999999999432110 0011112222222233332 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHH---HcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~---~~~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|...+...++.+|++|+|+|++++...+....| ..+ ...+.|+++|+||+|+.
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 57899999999999999999999999999999999987665544333 222 23478999999999986
No 66
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.41 E-value=1.9e-13 Score=155.01 Aligned_cols=113 Identities=26% Similarity=0.311 Sum_probs=80.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|++|+|||||+++|+.....+. +...|+|.+.....+.|. +..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v---------------~~~~g~T~d~~~~~~~~~----------------~~~ 52 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV---------------EDTPGVTRDRIYSSAEWL----------------NYD 52 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTC----------------SSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee---------------cCCCCCccceEEEEEEEC----------------Cce
Confidence 5899999999999999999944322111 112355655554444443 678
Q ss_pred EEEEeCCCCC--------CcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~--------df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+.||||||+. .|...+..+++.+|++|+|+|+.+|.+.....+++.+...++|+++++||+|+.
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 9999999986 466677889999999999999999999988888887878899999999999976
No 67
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.41 E-value=4.2e-13 Score=135.54 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=80.7
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
......+|+++|+.|+|||||+++|+........ ...++.......+.+ +
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~--------------~ 53 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------------KATIGADFLTKEVMV--------------D 53 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEES--------------S
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCcccceEEEEEEEE--------------C
Confidence 3456789999999999999999999764321100 011122222222222 2
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHH---c----CCCCeEEEEECCCcc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---G----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~---~----~~~p~ilviNKiD~~ 163 (832)
+..+.+.||||||+.+|.......++.+|++|+|+|++++........|. .+. . .++|+++|+||+|+.
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 23578999999999999888888899999999999999865544433332 111 1 468999999999986
No 68
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.41 E-value=9.9e-13 Score=131.12 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=79.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|+.|+|||||+++|+......... ..|.|..... ...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---------------~~~~t~~~~~---~~~---------------- 66 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK---------------TPGKTRSINF---YLV---------------- 66 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS---------------SCCCCCCEEE---EEE----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccC---------------CCCCccCeEE---EEE----------------
Confidence 345799999999999999999997654111110 1122322211 111
Q ss_pred ceEEEEEeCCCC----------CCcHHHHHHHhh---ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGH----------VDFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh----------~df~~~~~~~l~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+..+.+|||||. ..|...+...++ .+|++++|+|+..+.......+++.+...++|+++|+||+|+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 346889999993 334433344444 4599999999999888888888888888899999999999987
No 69
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.41 E-value=1.2e-12 Score=128.62 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=80.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+...-. .+....++.......+.+. ++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~-------------~~~ 54 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG----------------KQYKQTIGLDFFLRRITLP-------------GNL 54 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT----------------HHHHHTTTSSEEEEEEEET-------------TTE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC----------------CCCCCceeEEEEEEEEEeC-------------CCC
Confidence 34579999999999999999999654211 0001111122222233332 112
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc-----CCCC-eEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIR-PVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~-----~~~p-~ilviNKiD~~ 163 (832)
...+++|||||+.+|.......++.+|++++|+|+++....+....| ..+.. .+.| +++|+||+|+.
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 47899999999999998899999999999999999986554433333 22222 2567 67899999986
No 70
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.40 E-value=2.9e-12 Score=126.64 Aligned_cols=118 Identities=20% Similarity=0.233 Sum_probs=79.3
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
......+|+++|+.|+|||||+++|+...- ...... .+.......+.+.
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~---------------t~~~~~~~~~~~~-------------- 62 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEP---------------TKADSYRKKVVLD-------------- 62 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCT---------------TCCEEEEEEEEET--------------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCC---------------ccceEEEEEEEEC--------------
Confidence 344568999999999999999999976431 110000 0000111112221
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+..+.+.||||||+.+|.......++.+|++++|+|+++....+.. .+.......++|+++|+||+|+.
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2356899999999999999999999999999999999975443332 22222223478999999999986
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.40 E-value=7.7e-13 Score=133.15 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=78.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
++..+|+++|+.|+|||||+++|+...-... + ....|.+.... .+.+. ++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------~------~~t~~~~~~~~--~~~~~--------------~~ 75 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFREN--------I------SATLGVDFQMK--TLIVD--------------GE 75 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEE--EEEET--------------TE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCcc--------C------CCCccceeEEE--EEEEC--------------CE
Confidence 4467999999999999999999975431100 0 00111222222 12221 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
...++||||||+.+|...+...++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 57899999999999999999999999999999999987655543333 2222 2478999999999986
No 72
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.40 E-value=7.7e-13 Score=130.35 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=81.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|+.|+|||||+++|+...-... ....++.......+.+. +.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~ 59 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEF----------------QESTIGAAFFSQTLAVN--------------DA 59 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT----------------SCCCSCCSEEEEEEEET--------------TE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCc----------------CCCCceeEEEEEEEEEC--------------CE
Confidence 4457999999999999999999975421110 01111211112222221 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc---CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~---~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|.......++.+|++|+|+|+++....+.. ..+..+.. .++|+++++||+|+.
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 57899999999999999999999999999999999986554433 23333333 367899999999986
No 73
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=130.27 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=79.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|+.|+|||||+++|+........ ...|+......+.+. +
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~----------------~ 66 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSS----------------S 66 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECS----------------S
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEEC----------------C
Confidence 4579999999999999999999443211100 011232222333332 5
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHH-c-----CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-G-----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~-~-----~~~p~ilviNKiD~~ 163 (832)
..+.||||||+.+|...+...++.+|++|+|+|+++....+.. ..+..+. . .++|+++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 7999999999999998888899999999999999986433332 2223322 2 478999999999987
No 74
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.40 E-value=6.8e-13 Score=131.67 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=80.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+... .. ++.+ |+......+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~----------~~~~-------t~~~~~~~~~~~---------------- 60 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD----------TISP-------TLGFNIKTLEHR---------------- 60 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS----------SCCC-------CSSEEEEEEEET----------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC----------cccc-------cCccceEEEEEC----------------
Confidence 456799999999999999999995432 10 1111 222222233333
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
+..+++|||||+.+|...+...++.+|++++|+|+++....+.. ..+..... .+.|+++|+||+|+.
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 68999999999999988888889999999999999987554432 23333332 468999999999987
No 75
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.39 E-value=7.8e-13 Score=129.82 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=80.8
Q ss_pred ccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCC
Q 003305 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (832)
++.+..+|+++|+.|+|||||+++|+....... ....+++......+.+.
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------------- 59 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT----------------YQATIGIDFLSKTMYLE-------------- 59 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSS----------------CCCCCSEEEEEEEEEET--------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCceeeEEEEEEEEEC--------------
Confidence 334457999999999999999999975421110 01112222222223232
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHH---HcCCCCeEEEEECCCcc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~---~~~~~p~ilviNKiD~~ 163 (832)
+....+.+|||||+.+|...+...++.+|++++|+|+++.........| ..+ ...++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 60 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 2356899999999999999999999999999999999875443332222 222 23478899999999986
No 76
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.39 E-value=9.4e-13 Score=127.93 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=80.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+...-... .+...|.+..... +.+ ++..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~~~~~~~~~~~--~~~--------------~~~~ 54 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEF--------------QESTIGAAFLTQT--VCL--------------DDTT 54 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCCCSSEEEEEEE--EEE--------------TTEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEE--EEE--------------CCEE
Confidence 457999999999999999999975321100 0111122222222 222 1236
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~~p~ilviNKiD~~ 163 (832)
..+++|||||+.+|.......++.+|++++|+|+++....+....| ..+.. .++|+++++||+|+.
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 7899999999999999999999999999999999986544433222 33332 367888999999986
No 77
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.39 E-value=1.4e-12 Score=126.81 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=79.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|+...-.... ....|.+... ..+.+. ++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~~~~~~~~~--~~~~~~--------------~~~~ 52 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENK--------------EPTIGAAFLT--QRVTIN--------------EHTV 52 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCSSEEEEE--EEEEET--------------TEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEE--EEEEEC--------------CEEE
Confidence 358999999999999999999754321100 0011122221 122221 2357
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.+|...+...++.+|++++|+|+++.........| ..+. ..+.|+++++||+|+.
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 899999999999999999999999999999999986554443322 2222 2478889999999986
No 78
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.1e-12 Score=129.10 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=74.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+........ ....++.......+.+ ++.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---------------~~~t~~~~~~~~~~~~--------------~~~ 58 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT---------------FISTVGIDFRNKVLDV--------------DGV 58 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC---------------CCCCCSCEEEEEEEEE--------------TTE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC---------------cCCceeeEEEEEEEEE--------------CCE
Confidence 44679999999999999999999764321110 0111122221112222 123
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
...+++|||||+.+|...+...++.+|++++|+|+++....+....| ..+. ..+.|+++++||+|+.
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 56899999999999998888899999999999999986554432222 2222 2578999999999987
No 79
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=8.8e-13 Score=131.17 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=76.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+...-. .+.+ |+......+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------~~~~-------t~~~~~~~~~~~---------------- 58 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV------------HTSP-------TIGSNVEEIVIN---------------- 58 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE------------EEEC-------CSCSSCEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------------cCcC-------CCccceEEEEEC----------------
Confidence 44579999999999999999999643211 0000 222222233333
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
+..+.+|||||+.+|.......++.+|++|+|+|++++...... ..+..+.. .+.|+++|+||+|+.
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 68999999999999988888999999999999999987544332 22333333 578999999999987
No 80
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.39 E-value=1.2e-12 Score=128.75 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=77.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|++|+|||||+++|.......... ..++|.......+.+. +..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~----------------~~~ 53 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTD---------------IAGTTRDVLREHIHID----------------GMP 53 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCS---------------STTCCCSCEEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeC---------------CCCceeceeeEEEEEC----------------CeE
Confidence 589999999999999999996543211111 1123333322333343 567
Q ss_pred EEEEeCCCCCCcHHH--------HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc---CCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~--------~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~---~~~p~ilviNKiD~~ 163 (832)
+.+|||||+.++... +...++.+|++++|+|+++.........+..+.. .++|+++|+||+|+.
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 899999999764321 2346789999999999998776555444444333 368999999999975
No 81
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.39 E-value=2e-12 Score=125.02 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=77.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|+...-.... .. .++ ......+.+ ++...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~--------------~~~-~~~~~~~~~--------------~~~~~ 51 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY--DP--------------TIE-DFYRKEIEV--------------DSSPS 51 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CT--------------TCC-EEEEEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC--CC--------------Ccc-eeEEEEEEE--------------CCEEE
Confidence 368999999999999999999764311000 00 000 000111222 12356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.||||||+.+|.......++.+|++++|+|+++....+.. .+++.....+.|+++++||+|+.
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 52 VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred EEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 799999999999999999999999999999999985443322 22222223578999999999986
No 82
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.39 E-value=2.3e-12 Score=129.20 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=53.0
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH-cCCCCeEEEEECCCc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-GERIRPVLTVNKMDR 162 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~-~~~~p~ilviNKiD~ 162 (832)
..++||||||+.+|...+...++.+|++++|+|++++...+....| ..+. ..+.|+++|+||+|.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 7899999999999999999999999999999999987655543333 3332 356889999999993
No 83
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.39 E-value=8.3e-13 Score=140.22 Aligned_cols=111 Identities=20% Similarity=0.252 Sum_probs=80.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|++|+|||||+++|+.... .+. ...|+|+......+.+. +.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~----------~v~------~~~g~t~~~~~~~~~~~----------------~~ 50 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ----------RVG------NWAGVTVERKEGQFSTT----------------DH 50 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE----------EEE------ECTTSSSEEEEEEEECS----------------SC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc----------ccC------CCCCeeEEEEEEEEEeC----------------CC
Confidence 35899999999999999999954321 111 12356776666556554 67
Q ss_pred EEEEEeCCCCCCcHH---------HHHH---HhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSS---------EVTA---ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~---------~~~~---~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++||||||+.+|.. .+.+ ..+.+|++|+|+|++.. .....++.++...++|+++|+||+|+.
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccch
Confidence 899999999988762 1111 23689999999999872 334455566677799999999999976
No 84
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.39 E-value=2.6e-12 Score=124.51 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=77.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|+...- .. .+.+ |+..... ..+. .+++..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~---------~~~~-------t~~~~~~-~~~~------------~~~~~~ 51 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VE---------KYDP-------TIEDSYR-KQVE------------VDCQQC 51 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CC---------SCCC-------CSEEEEE-EEEE------------SSSCEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CC---------CCCC-------CccceEE-EEEE------------ECCEEE
Confidence 46899999999999999999976321 10 0000 1111110 1111 123467
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.+|.......++.+|++++|+|+++....... .+.+.....+.|+++++||+|+.
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 899999999999999999999999999999999875433322 12222223578999999999986
No 85
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.39 E-value=9.7e-13 Score=132.60 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=80.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+...-... + ....|++..... +.+ +++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~---~~t~~~~~~~~~--~~~--------------~~~~ 56 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA-----------F---VSTVGIDFKVKT--IYR--------------NDKR 56 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC-----------C---CCCCSEEEEEEE--EEE--------------TTEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------c---CCccceeEEEEE--EEE--------------CCeE
Confidence 467999999999999999999965321100 0 001122222222 222 1236
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~~p~ilviNKiD~~ 163 (832)
..+.||||||+.+|...+...++.+|++|+|+|++++........| ..+.. .+.|+++|+||+|+.
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 7899999999999999999999999999999999986554433333 33332 478999999999986
No 86
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=2.6e-13 Score=154.82 Aligned_cols=116 Identities=25% Similarity=0.295 Sum_probs=84.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
...++|+++|++|+|||||+++|+.....+ .+...|+|.......+.|.
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~---------------v~~~~g~t~~~~~~~~~~~---------------- 69 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI---------------VEDTPGVTRDRIYSSAEWL---------------- 69 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTTC----------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCcceeEEEEEEEEC----------------
Confidence 345799999999999999999994322111 1112356665555444443
Q ss_pred ceEEEEEeCCC--------CCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPG--------HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPG--------h~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+..+++||||| +..+...+..+++.+|++|+|+|+.++.......+++.+...++|+++|+||+|+.
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 67899999999 55667778889999999999999999999999999998888899999999999976
No 87
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.38 E-value=2.7e-12 Score=129.52 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=79.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+...-. . +....++.......+.+. ++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~--~--------------~~~~t~~~~~~~~~~~~~--------------~~ 76 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS--E--------------RQGSTIGVDFTMKTLEIQ--------------GK 76 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEET--------------TE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC--C--------------CCCCCcceEEEEEEEEEC--------------CE
Confidence 34679999999999999999999653210 0 000011111212222232 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|.......++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 57899999999999999999999999999999999876544332222 3332 2568899999999986
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.38 E-value=1.8e-12 Score=129.57 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=79.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|....-. . + ..|+......+.+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~--~----------~-------~~t~~~~~~~~~~~---------------- 65 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA--T----------L-------QPTWHPTSEELAIG---------------- 65 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC--C----------C-------CCCCSCEEEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--c----------c-------ccCCCCCeEEEEEC----------------
Confidence 34569999999999999999999653211 0 0 01222222334443
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHH----cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
+..++++||||+.+|.......++.+|++++|+|++++...+... .+.... ..+.|+++++||+|+.
T Consensus 66 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 589999999999998887778889999999999999875544332 223332 2578999999999987
No 89
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.38 E-value=2.9e-12 Score=127.47 Aligned_cols=126 Identities=18% Similarity=0.095 Sum_probs=81.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
+...+|+++|+.|+|||||+++|+...-... .. ..++.... ...+.+.. .. ......+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~-------------~t~~~~~~~~~~~~~~~--~~---~~~~~~~ 67 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSK---FI-------------TTVGIDFREKRVVYRAN--GP---DGAVGRG 67 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS---CC-------------CCCSEEEEEEEEEECTT--SC---CCSSCCC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcC---cc-------------cccceeeeeEEEEEecC--Cc---ccccccC
Confidence 4567999999999999999999975321100 00 00111111 11111110 00 0000011
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHH-HHHHHc----CCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~-~~~~~~----~~~p~ilviNKiD~~ 163 (832)
....++||||||+.+|...+...++.+|++|+|+|+++....+.... +..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred cEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 25789999999999999999999999999999999998665544322 233322 578999999999986
No 90
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.38 E-value=1.3e-12 Score=127.14 Aligned_cols=116 Identities=21% Similarity=0.171 Sum_probs=78.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+...-... ....++.......+.+ ++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~~~~ 51 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS----------------FITTIGIDFKIKTVDI--------------NGKK 51 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-----------------------CCEEEEEEES--------------SSCE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCC----------------CCCccceeEEEEEEEE--------------CCEE
Confidence 357999999999999999999975421100 0011122222222222 2235
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
..+.||||||+.+|...+...++.+|++++|+|+++.........| ..+. ..+.|+++++||+|+.
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 7899999999999988888999999999999999986544332222 2222 2478999999999984
No 91
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.38 E-value=6.9e-13 Score=131.18 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=59.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+..... .+....++.......+.+. ++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~--------------~~ 55 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELD--------------GK 55 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEEC--------------CE
Confidence 44689999999999999999999543210 0111122222222233332 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHHc---CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~~p~ilviNKiD~~ 163 (832)
...++||||||+.+|.......++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 578999999999999888888899999999999999865433322 2233332 368999999999986
No 92
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=130.44 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=81.8
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
.+...+|+++|+.|+|||||+++|+........ ....|.+..... +.+ ++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~~~--~~~--------------~~ 71 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--------------RTTIGVEFSTRT--VML--------------GT 71 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--------------CCCSSEEEEEEE--EEE--------------TT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEEE--EEE--------------CC
Confidence 345679999999999999999999764321110 001122222211 111 12
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHHc---CCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~~p~ilviNKiD~~ 163 (832)
....+.||||||+.+|.......++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+.
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 3678999999999999988999999999999999999865543322 2333332 367899999999986
No 93
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.38 E-value=9.1e-13 Score=131.29 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=81.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+...-.... ....|.+..... +.+ +++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~--~~~--------------~~~ 69 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF--------------VSTVGIDFKVKT--VYR--------------HDK 69 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCCCEEEEEE--EEE--------------TTE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCc--------------CCceeEEEEEEE--EEE--------------CCe
Confidence 34679999999999999999999754321100 001122222222 222 123
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHHc---CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~~p~ilviNKiD~~ 163 (832)
...++||||||+.+|...+...++.+|++|+|+|+++........ .+..+.. .+.|+++|+||+|+.
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 678999999999999888888999999999999998865444332 2233333 378999999999986
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.38 E-value=2.1e-12 Score=129.39 Aligned_cols=112 Identities=21% Similarity=0.174 Sum_probs=74.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+... . ..+ .. |+......+.+.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~----------~~~---~~----t~~~~~~~~~~~---------------- 71 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--I----------VTT---IP----TIGFNVETVEYK---------------- 71 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--C----------EEE---EE----ETTEEEEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--c----------ccc---CC----cCceeEEEEEEC----------------
Confidence 345789999999999999999993211 0 010 11 222222233333
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
+..+++|||||+.+|.......++.+|++++|+|+++....... ..+..... .+.|+++|+||+|+.
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence 68999999999999988888999999999999999986544332 22333322 378999999999987
No 95
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=1.4e-12 Score=130.54 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=81.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
++..+|+++|+.|+|||||+++|+...-... .....|.+....... + ++.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~--~--------------~~~ 70 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN--------------ISPTIGASFMTKTVP--C--------------GNE 70 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT--------------CCCCSSEEEEEEEEE--C--------------SSS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------cCCCcceeEEEEEEE--e--------------CCE
Confidence 3457999999999999999999976431100 001112222222111 1 224
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|...+...++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 67899999999999999999999999999999999986554443333 23322 378899999999986
No 96
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=2.5e-12 Score=128.26 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=81.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+...-.... ....|.+.... .+.+. +.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~~~~--~~~~~--------------~~ 62 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--------------AATIGVDFKVK--TISVD--------------GN 62 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCCSEEEEEE--EEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--------------CCccceEEEEE--EEEEC--------------Ce
Confidence 34579999999999999999999654311000 00112222222 22221 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc----CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~----~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|.......++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 67899999999999998899999999999999999986554443333 33333 367889999999985
No 97
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.37 E-value=1.5e-12 Score=131.05 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=74.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|.... ...+. -|+......+.+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~------------~~~~~-------~t~~~~~~~~~~~---------------- 67 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDR------------LGQHV-------PTLHPTSEELTIA---------------- 67 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEET----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC------------CCccC-------CCCCceeEEEEEC----------------
Confidence 445689999999999999999993211 00111 1222222334443
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHH----cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
+..+++|||||+.+|...+...++.+|++++|+|+++....+... .+.... ..++|+++|+||+|+.
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 589999999999998887888899999999999999865443322 223332 2578999999999987
No 98
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=1e-12 Score=132.81 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=82.0
Q ss_pred hcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCc
Q 003305 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (832)
Q Consensus 13 ~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (832)
|...+...+|+++|+.|+|||||+++|+...-... .+ ..+++......+.+.
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~---~~-------------~t~~~~~~~~~~~~~------------ 71 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG---QG-------------ATIGVDFMIKTVEIN------------ 71 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT---CC-------------CCCSEEEEEEEEEET------------
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCC---CC-------------CccceeEEEEEEEEC------------
Confidence 33445678999999999999999999965421100 00 111222222223332
Q ss_pred CCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
+....++||||||+.+|.......++.+|++|+|+|+++....+...-| ..+. ..++|+++|+||+|+.
T Consensus 72 --~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 72 --GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp --TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred --CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 2357899999999999998888999999999999999986544332222 2222 3467889999999986
No 99
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.37 E-value=1.2e-12 Score=130.30 Aligned_cols=117 Identities=23% Similarity=0.227 Sum_probs=78.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+...-... ....++.......+.+. ++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~ 67 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR----------------TEATIGVDFRERAVDID--------------GE 67 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS----------------CCCCCSCCEEEEEEEET--------------TE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCCcceEEEEEEEEEC--------------CE
Confidence 3568999999999999999999965321100 00111111112222222 23
Q ss_pred ceEEEEEeCCCCCCcH-HHHHHHhhccCcEEEEEcCCCccchhHHHHH-----HHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~-~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-----~~~~~~~~p~ilviNKiD~~ 163 (832)
...++||||||+.+|. ......++.+|++|+|+|+++........-| +.+...++|+++|+||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5789999999999988 6778889999999999999975443332222 22224578999999999986
No 100
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.37 E-value=1.7e-12 Score=140.62 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=54.5
Q ss_pred ceEEEEEeCCCCCC-------------cHHHHHHHhhccCcEEEEEcC-CCccchhH-HHHHHHHHcCCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDC-IEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~d-------------f~~~~~~~l~~~D~ailVvda-~~g~~~qt-~~~~~~~~~~~~p~ilviNKiD 161 (832)
...++||||||+.+ +...+..+++.+|++++|+|+ ..+...+. ..+++.+...+.|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 56899999999865 556678899999999999997 55665444 3677777778899999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 210 l~ 211 (315)
T 1jwy_B 210 LM 211 (315)
T ss_dssp SS
T ss_pred cC
Confidence 87
No 101
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.37 E-value=2e-12 Score=125.74 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=80.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|+.|+|||||+++|+...-... .....|.+..... +.+. +..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~--~~~~--------------~~~ 54 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPN--------------INPTIGASFMTKT--VQYQ--------------NEL 54 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTT--------------CCCCCSEEEEEEE--EEET--------------TEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCC--------------CCCceeEEEEEEE--EEEC--------------CeE
Confidence 346999999999999999999966431100 0011122222222 2221 235
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
..+.+|||||+.+|.......++.+|++++|+|+++....+....| ..+. ..+.|+++++||+|+.
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 7899999999999999899999999999999999987655443333 3333 3456788899999986
No 102
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.37 E-value=1.6e-12 Score=130.59 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=77.5
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
.++..+|+++|..|+|||||+++|...... . ...+.+.........+. ++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~~-------------~~ 66 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSP--N---------------ETLFLESTNKIYKDDIS-------------NS 66 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCG--G---------------GGGGCCCCCSCEEEEEC-------------CT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCC--c---------------ceeeeccccceeeeecc-------------CC
Confidence 345679999999999999999987442110 0 00111111112222221 12
Q ss_pred CceEEEEEeCCCCCCcHHHH---HHHhhccCcEEEEEcCCCccchhHHHHHHHHH-----cCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEV---TAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~---~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~-----~~~~p~ilviNKiD~~ 163 (832)
+...++||||||+.+|.... ...++.+|++|+|+|+++........+...+. ..++|+++|+||+|+.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 46789999999999998777 78999999999999999873222222222222 3478999999999987
No 103
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=2.1e-12 Score=125.72 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=76.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|+...-... ..+ ..+.+.. . .... +....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------~~~---t~~~~~~-~--~~~~--------------~~~~~ 51 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRES-----------YIP---TVEDTYR-Q--VISC--------------DKSIC 51 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSS-----------CCC---CSCEEEE-E--EEEE--------------TTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------CCC---CccccEE-E--EEEE--------------CCEEE
Confidence 46899999999999999999965321100 000 0011111 0 0111 12356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHHHHHHc-----CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG-----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~~~~~~-----~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.+|.......++.+|++++|+|+++...... ...+..+.. .++|+++++||+|+.
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 89999999999999999999999999999999987543332 233333332 368999999999986
No 104
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.37 E-value=1.7e-12 Score=136.46 Aligned_cols=112 Identities=21% Similarity=0.343 Sum_probs=82.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|++|+|||||+++|....- .+. ...|+|+......+.+. +
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~----------~~~------~~pg~tv~~~~~~~~~~----------------~ 51 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ----------YVA------NWPGVTVEKKEGVFTYK----------------G 51 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE----------EEE------ECTTSCCEEEEEEEEET----------------T
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC----------ccc------CCCCceEEEEEEEEEEC----------------C
Confidence 457899999999999999999954221 111 12367777766666554 6
Q ss_pred eEEEEEeCCCCCCcHH-----HH-HHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSS-----EV-TAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~-----~~-~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+.||||||+.+|.. .+ ...+ ..+|++++|+|++... .....+.++...++|+++++||+|+.
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 8999999999988753 12 2333 4799999999998742 23345567777899999999999975
No 105
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.37 E-value=7.9e-13 Score=128.34 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=79.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+...-... .. ..++.......+.+. +.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~-------------~t~~~~~~~~~~~~~--------------~~ 52 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKD---YK-------------KTIGVDFLERQIQVN--------------DE 52 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCC---SS-------------CCCSSSEEEEEEEET--------------TE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCC---CC-------------CceEEEEEEEEEEEC--------------CE
Confidence 3457999999999999999999975321100 00 011111111222221 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc--CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
...+.+|||||+.+|.......++.+|++++|+|+++....+....| ..+.. .+.|+++++||+|+.
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 57899999999999988888999999999999999986543332222 22222 478999999999986
No 106
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.37 E-value=8.1e-12 Score=125.79 Aligned_cols=117 Identities=20% Similarity=0.230 Sum_probs=80.2
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
..+..+|+++|+.|+|||||+++|+...-. ....+ .+.......+.+. +
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~---------------t~~~~~~~~~~~~--------------~ 59 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEP---------------TKADSYRKKVVLD--------------G 59 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCT---------------TCCEEEEEEEEET--------------T
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCC---------------ccceEEEEEEEEC--------------C
Confidence 345689999999999999999999764311 10000 0111111122221 2
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHH----HcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~----~~~~~p~ilviNKiD~~ 163 (832)
..+.+.||||||+.+|.......++.+|++++|+|+++.........| ..+ ...++|+++|+||+|+.
T Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred EEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 356899999999999999999999999999999999975443332222 222 23478999999999986
No 107
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.36 E-value=2.2e-12 Score=127.22 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=75.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|+.|+|||||+++|+...-. . ++.+ ..+.+. ...+.+ ++..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--~---------~~~~---t~~~~~---~~~~~~--------------~~~~ 53 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV--D---------SYDP---TIENTF---TKLITV--------------NGQE 53 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--S---------CCCT---TCCEEE---EEEEEE--------------TTEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--C---------CCCC---CccccE---EEEEEE--------------CCEE
Confidence 4579999999999999999999753311 0 0000 011111 111122 2235
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-----HHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-----~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+.++||||||+.+|.......++.+|++++|+|+++........ +++.....++|+++|+||+|+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 78899999999999877778889999999999998754433322 2223234478999999999985
No 108
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.36 E-value=5.8e-12 Score=133.41 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=75.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|+.|+|||||+++|++........ ..+.|.......+.+.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~---------------- 85 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP---------------FQSEGPRPVMVSRSRA---------------- 85 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS---------------SSCCCSSCEEEEEEET----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC---------------CCCcceeeEEEEEeeC----------------
Confidence 356799999999999999999997543211111 1122333333333332
Q ss_pred ceEEEEEeCCCCCCcH---HHHHHHh------hccCcEEEEEcCCC-ccchhHHHHHHHHHcC-C----CCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDFS---SEVTAAL------RITDGALVVVDCIE-GVCVQTETVLRQALGE-R----IRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~---~~~~~~l------~~~D~ailVvda~~-g~~~qt~~~~~~~~~~-~----~p~ilviNKiD 161 (832)
+..++||||||+.++. ......+ +.+|++++|+|... .........++.+... + .|+++|+||+|
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~D 165 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcc
Confidence 6789999999998764 2222222 36899999988754 3444444455444322 2 58999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 166 l~ 167 (270)
T 1h65_A 166 FS 167 (270)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 109
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.36 E-value=1.2e-12 Score=132.24 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=81.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+...-... ....++.......+.+. +.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~ 55 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND----------------YISTIGVDFKIKTVELD--------------GK 55 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT----------------CCCSSCCCEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCcccceeEEEEEEEC--------------CE
Confidence 4567999999999999999999966431100 01112222222223332 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|...+...++.+|++|+|+|+++....+....| ..+. ..+.|+++|+||+|+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 56899999999999988888899999999999999987655443333 2222 2467899999999986
No 110
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=2.1e-12 Score=129.45 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=78.5
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
.....+|+++|+.|+|||||+++|+...-... +.+ ..+.+.. . ...+ ++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~~~---t~~~~~~-~--~~~~--------------~~ 53 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT-----------YIP---TIEDTYR-Q--VISC--------------DK 53 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCT-----------TSC---CCCEEEE-E--EEEE--------------TT
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCc-----------ccC---cccccee-E--EEEE--------------CC
Confidence 34457999999999999999999976321100 000 0011110 0 1111 12
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc-----CCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG-----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~-----~~~p~ilviNKiD~~ 163 (832)
....+.||||||+.+|.......++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+.
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 356899999999999999899999999999999999875443322 22222221 367999999999987
No 111
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.35 E-value=5.7e-12 Score=121.56 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=76.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|+.|+|||||+++|+........ .. .+.......+.+ ++..+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~---------------~~~~~~~~~~~~--------------~~~~~~ 52 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC--DP---------------TIEDSYRKQVVI--------------DGETCL 52 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC--CT---------------TCCEEEEEEEEE--------------TTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc--CC---------------ccceEEEEEEEE--------------CCEEEE
Confidence 58999999999999999999754211000 00 000000111112 123577
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHH----cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
+.+|||||+.+|.......++.+|++++|+|+++........ .+..+. ..++|+++++||+|+.
T Consensus 53 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 999999999999998889999999999999998754433322 222222 2378999999999987
No 112
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.35 E-value=2.9e-12 Score=124.70 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=73.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+...-.... ...++.......+.+ ++..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~--------------~~~~ 54 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKH----------------ITTLGASFLTKKLNI--------------GGKR 54 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSC----------------CCCCSCEEEEEEEES--------------SSCE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCC----------------CCccceEEEEEEEEE--------------CCEE
Confidence 4579999999999999999999754311000 001111111112222 2346
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HH---HHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQ---ALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~---~~~~~~p~ilviNKiD~~ 163 (832)
..+.+|||||+.+|.......++.+|++++|+|+++....+....| .. ....+.|+++++||+|+.
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 7899999999999988888888999999999999986544433322 22 223578999999999986
No 113
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.35 E-value=2.3e-12 Score=126.04 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=70.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+........ ...|.+..... +.+. +..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~---------------~~~~~~~~~~~--~~~~--------------~~~ 51 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH---------------EQLGEDVYERT--LTVD--------------GED 51 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C---------------CCSSSSEEEEE--EEET--------------TEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc---------------CccccceeEEE--EEEC--------------CEE
Confidence 4579999999999999999999543211100 01233332222 2222 235
Q ss_pred eEEEEEeCCCCCC--cHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHHc----CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVD--FSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~d--f~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
..+.+|||||+.+ +.......++.+|++++|+|+++........ .+..+.. .++|+++|+||+|+.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 6899999999988 4444556678899999999998755443332 2333333 278999999999986
No 114
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.35 E-value=3e-12 Score=145.22 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=82.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|++|+|||||+++|+.....+....+ |+|.+.....+.+. +
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~---------------gtT~d~~~~~i~~~----------------g 227 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP---------------GTTRDPVDDEVFID----------------G 227 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---------------------CCEEEEET----------------T
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCC---------------CCcCCceEEEEEEC----------------C
Confidence 3469999999999999999999665432222112 34554444455554 6
Q ss_pred eEEEEEeCCCCCCcHH------------HHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSS------------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~------------~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+.+|||||+..+.. .+..+++.+|++++|+|+.++...+...++..+...+.|+++++||+|+.
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~ 305 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 305 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 6899999999854322 23567889999999999999998888777787878899999999999987
No 115
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.35 E-value=3.3e-12 Score=126.60 Aligned_cols=114 Identities=21% Similarity=0.204 Sum_probs=75.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|+........ .+ .+.......+.+ ++..+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~---------------t~~~~~~~~~~~--------------~~~~~ 52 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY--DP---------------TIEDSYRKQVVI--------------DGETC 52 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCC--CT---------------TCCEEEEEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCC--CC---------------CchheEEEEEEE--------------CCcEE
Confidence 468999999999999999999754311100 11 011111111112 12356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HH----HHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQ----ALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~----~~~~~~p~ilviNKiD~~ 163 (832)
.++||||||+.+|.......++.+|++++|+|+++.........| .. ....+.|+++|+||+|+.
T Consensus 53 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 788999999999999999999999999999999986443332222 22 223478999999999987
No 116
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.35 E-value=2.8e-12 Score=130.06 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=79.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|+.|+|||||+++|+...-.. +....++.......+.+. +.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~ 67 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP----------------SFITTIGIDFKIKTVDIN--------------GK 67 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC----------------SSSCCCSCCEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc----------------ccCCcccceEEEEEEEEC--------------CE
Confidence 345799999999999999999997532110 001112222222233332 22
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|...+...++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 47899999999999988888999999999999999986544332222 2332 2368999999999984
No 117
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.35 E-value=1.7e-12 Score=128.44 Aligned_cols=111 Identities=17% Similarity=0.149 Sum_probs=79.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|+.|+|||||+++|+...- . .+.. |+......+.+. +
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~-------~~~~----------t~~~~~~~~~~~----------------~ 64 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--V-------HTSP----------TIGSNVEEIVIN----------------N 64 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--E-------EEEC----------CSSSSCEEEEET----------------T
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--C-------ccCC----------cCceeeEEEEEC----------------C
Confidence 457999999999999999999965421 0 0000 111111223333 6
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
..+.||||||+.+|.......++.+|++++|+|+++....+.. ..+..... .++|+++++||+|+.
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 8999999999999988888899999999999999987544432 23333332 578999999999987
No 118
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.35 E-value=3.8e-12 Score=124.05 Aligned_cols=111 Identities=20% Similarity=0.239 Sum_probs=74.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|...... .+ ...++|+......+.+. +.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-----~~-----------~~~~~t~~~~~~~~~~~----------------~~ 50 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-----IG-----------NWPGVTVEKKEGEFEYN----------------GE 50 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-----CC----------------CCCCCEEEEEET----------------TE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-----cc-----------CCCCcceeeeEEEEEEC----------------Cc
Confidence 468999999999999999999542211 01 11234444333344443 57
Q ss_pred EEEEEeCCCCCCcHH------HHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSS------EVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~------~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.+|.. .....++ .+|++++|+|++.. ......+..+...++|+++|+||+|+.
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 899999999988741 1233343 79999999999862 122233445556789999999999975
No 119
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.35 E-value=3e-12 Score=128.11 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=79.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeE-EEEeeccchhhccccCcCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI-SLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~ 95 (832)
....+|+++|+.|+|||||+++|+...-.... .. |+..... .+.+ ++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~--~~----------------t~~~~~~~~~~~--------------~~ 68 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY--VP----------------TVFENFSHVMKY--------------KN 68 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CC----------------CSEEEEEEEEEE--------------TT
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc--CC----------------eeeeeeEEEEEE--------------CC
Confidence 44579999999999999999999764311000 00 1111111 1111 22
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHH-HHHH--cCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
..+.++||||||+.+|.......++.+|++|+|+|+++....... ..| ..+. ..++|+++|+||+|+.
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 356789999999999998888899999999999999986554442 223 2222 2368999999999986
No 120
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.35 E-value=1.7e-12 Score=132.44 Aligned_cols=127 Identities=17% Similarity=0.102 Sum_probs=80.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+...-. . +....+++......+.+..... .....+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~--------------~~~~t~~~~~~~~~~~~~~~~~----~~~~~~~~ 82 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN--P--------------KFITTVGIDFREKRVVYNAQGP----NGSSGKAF 82 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC--C--------------EEEEEEEEEEEEEEEEEEC-----------CCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC--c--------------CCCCceeEEEEEEEEEECCccc----cccccCce
Confidence 45679999999999999999999643210 0 0000111111112222221000 00000111
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHH-HHc----CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~-~~~----~~~p~ilviNKiD~~ 163 (832)
...++||||||+.+|...+...++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+.
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 5789999999999999999999999999999999998655544333322 221 467899999999986
No 121
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=1.4e-12 Score=128.91 Aligned_cols=112 Identities=20% Similarity=0.162 Sum_probs=75.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+... . ..+. -|+......+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~-----------~-~~~~-------~t~~~~~~~~~~~---------------- 60 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGE-----------V-VTTK-------PTIGFNVETLSYK---------------- 60 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE-----------E-EEEC-------SSTTCCEEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC-----------c-CccC-------CcCccceEEEEEC----------------
Confidence 456799999999999999999993211 1 0000 1222222233343
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHH----cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~----~~~~p~ilviNKiD~~ 163 (832)
+..+++|||||+.+|...+...++.+|++++|+|+++....+.. ..+.... ..+.|+++++||+|+.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 68999999999999988888889999999999999887544332 2333333 2567999999999987
No 122
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.34 E-value=1.4e-12 Score=133.13 Aligned_cols=121 Identities=16% Similarity=0.179 Sum_probs=79.7
Q ss_pred cccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcC
Q 003305 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (832)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (832)
.......+|+++|+.|+|||||+++|+...-. . .+. .|+........+.. .
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~------~~~----------~t~~~~~~~~~~~~-----------~ 56 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFE--K------NYN----------ATVGAVNHPVTFLD-----------D 56 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTT--C------EEE----------TTTTEEEEEEEEEB-----------T
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCC--C------CCC----------CccceeeEEEEEEe-----------C
Confidence 33455679999999999999999999532110 0 000 01111111111210 0
Q ss_pred CCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH----HHHHcCCCCeEEEEECCCcc
Q 003305 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~----~~~~~~~~p~ilviNKiD~~ 163 (832)
.+....++||||||+.+|.......++.+|++|+|+|++++...+....| ......+.|+++|+||+|+.
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 11237899999999999988888889999999999999987665554322 23334468999999999986
No 123
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.34 E-value=1.8e-12 Score=129.38 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=80.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|+.|+|||||+++|+........ ....|.+... ..+.+. ++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~--~~~~~~--------------~~ 68 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFGA--RMVNID--------------GK 68 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEEE--EEEEET--------------TE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCcccceeEE--EEEEEC--------------CE
Confidence 34679999999999999999999764321110 0001112211 122221 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~---~~~~p~ilviNKiD~~ 163 (832)
...++||||||+.+|.......++.+|++|+|+|+++....+... .+..+. ..+.|+++|+||+|+.
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 578999999999999888889999999999999999865444332 223333 2478899999999986
No 124
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=1e-12 Score=131.27 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=81.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+...-.... . ...|++...... .+ +++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------~--------~t~~~~~~~~~~--~~--------------~~~ 70 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF------V--------STVGIDFKVKTV--YR--------------HEK 70 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCE------E--------EEETTTEEEEEE--EE--------------TTT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCccc------C--------CCeeeEEEEEEE--EE--------------CCE
Confidence 44679999999999999999999764321100 0 001222222222 11 224
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc---CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|.......++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 68899999999999999999999999999999999975444332222 33333 478999999999986
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=7.7e-12 Score=127.54 Aligned_cols=111 Identities=17% Similarity=0.246 Sum_probs=75.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+........ .... -|+.. .+ .
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~--------~~~~-------~~~~~-----~~----------------~ 53 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--------VSQE-------PLSAA-----DY----------------D 53 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC--------CCSS-------CEEET-----TG----------------G
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee--------eecC-------ceEEE-----Ee----------------e
Confidence 45679999999999999999999764311000 0000 01100 01 2
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhc----cCcEEEEEcCC-C--ccchhHHHHHHHHH------cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI-E--GVCVQTETVLRQAL------GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~----~D~ailVvda~-~--g~~~qt~~~~~~~~------~~~~p~ilviNKiD~~ 163 (832)
...+++|||||+.+|...+...++. +|++|+|+|++ . ........+.+... ..++|+++++||+|+.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 5688999999999998888888877 89999999998 3 22222222222221 2578999999999987
No 126
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.33 E-value=2e-12 Score=132.36 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=82.7
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
.....+|+++|+.|+|||||+++|+...-.. .+. ...|.+.......+. .
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~--------~~~------~t~~~~~~~~~~~~~----------------~ 61 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEK--------KYV------ATLGVEVHPLVFHTN----------------R 61 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTC--------EEE------TTTTEEEEEEEEEET----------------T
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCC--------CCC------CccceeEEEEEEEEC----------------C
Confidence 3456799999999999999999965432100 000 111334433322222 2
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHHc--CCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~~--~~~p~ilviNKiD~~ 163 (832)
+...++||||||+.+|.......++.+|++|+|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 3678999999999999888889999999999999999876655543342 2222 378999999999986
No 127
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.33 E-value=1.7e-12 Score=131.25 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=79.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+...-.-.. .+ .+.......+.+ ++.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~---------------t~~~~~~~~~~~--------------~~~ 76 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IP---------------TVFDNYSANVMV--------------DGK 76 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C--CC---------------CSEEEEEEEEEC--------------C-C
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc--CC---------------eecceeEEEEEE--------------CCE
Confidence 34569999999999999999999754321100 11 111111111111 234
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHHc--CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
.+.++||||||+.+|.......++.+|++++|+|+++....+... .| ..+.. .++|+++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 677889999999999888888999999999999999876655542 23 33333 378999999999987
No 128
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.33 E-value=5.6e-12 Score=125.16 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=78.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|+.|+|||||+++|..... .. +...++|+......+.+. +
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~----------~~------~~~~~~t~~~~~~~~~~~----------------~ 53 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV----------YI------GNWPGVTVEKKEGEFEYN----------------G 53 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE----------EE------EECTTSCCEEEEEEEEET----------------T
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----------cc------cCCCCeeccceEEEEEeC----------------C
Confidence 457999999999999999999954311 00 111245555544455553 6
Q ss_pred eEEEEEeCCCCCCcHH------HHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSS------EVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~------~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+++|||||+.+|.. .....++ .+|++++|+|++.. ......+..+...+.|+++++||+|+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 8899999999998842 2233343 49999999998752 223344456666789999999999975
No 129
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.33 E-value=1.1e-12 Score=130.71 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=78.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
++..+|+++|+.|+|||||+++|+... . .++.+ |+......+.+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~--~----------~~~~~-------t~~~~~~~~~~~---------------- 64 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGD--V----------VTTVP-------TVGVNLETLQYK---------------- 64 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSC--C----------EEECS-------STTCCEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCC--C----------CCcCC-------CCceEEEEEEEC----------------
Confidence 345799999999999999999993211 0 01111 222222233333
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
+..+++|||||+.+|...+...++.+|++++|+|+++....... ..+..... .+.|+++|+||+|+.
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 68999999999999888777888999999999999986443332 22333332 378999999999987
No 130
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.33 E-value=4.3e-12 Score=137.00 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=82.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
-.+|+++|.+|+|||||+++|+........ ...|.|+......+.+. ++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~---------------~~~~~Ti~~~~~~~~~~---------------~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT---------------RRLGATIDVEHSHLRFL---------------GNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG---------------GGCCCCCSEEEEEEEET---------------TTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc---------------cCcCCccceEEEEEEeC---------------Cce
Confidence 368999999999999999999654222211 12234555555444442 268
Q ss_pred EEEEEeCCCCCCc-----HHHHHHHhhccCcEEEEEcCCCccchhHHHHHH----HHH--cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDF-----SSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df-----~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~----~~~--~~~~p~ilviNKiD~~ 163 (832)
.+++|||||+.+| .......++.+|++|+|+|+++....+....|. .+. ..++|+++++||+|+.
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 9999999999998 455667778999999999999876655543332 221 2378999999999987
No 131
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.32 E-value=1.2e-11 Score=122.92 Aligned_cols=114 Identities=21% Similarity=0.242 Sum_probs=68.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|+...-. ....+ .+.......+.+ ++..+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~---------------t~~~~~~~~~~~--------------~~~~~ 69 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDP---------------TIEDSYRKQVVI--------------DGETC 69 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCT---------------TCCEEEEEEEEE--------------TTEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc--cccCC---------------ccceEEEEEEEE--------------CCEEE
Confidence 468999999999999999999754211 10000 000000111222 12357
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH----cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~~p~ilviNKiD~~ 163 (832)
.+.||||||+.+|.......++.+|++++|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp EEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 799999999999998889999999999999999986554433322 2222 2478999999999987
No 132
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.32 E-value=3.3e-12 Score=123.86 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=61.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|+....... ....|.+.. . .+.+ ++...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~---------------~~~~~~~~~-~--~~~~--------------~~~~~ 49 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE---------------AEAAGHTYD-R--SIVV--------------DGEEA 49 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-E--EEEE--------------TTEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC---------------CCccccceE-E--EEEE--------------CCEEE
Confidence 35899999999999999999942211000 001122221 1 1111 22367
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
.+.++||||+.+|.......++.+|++++|+|+++....... ..+..+.. .++|+++++||+|+.
T Consensus 50 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 899999999999988888899999999999999975443332 22233332 368999999999986
No 133
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=131.12 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+....... ....++.......+.+. ++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~ 72 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD----------------SNHTIGVEFGSRVVNVG--------------GK 72 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEET--------------TE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc----------------CCCcccceeEEEEEEEC--------------Ce
Confidence 4567999999999999999999964321100 00111211112222221 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|...+...++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 57899999999998888888899999999999999986554443332 2222 3478899999999986
No 134
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=7.3e-12 Score=125.17 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=79.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+...- ...... +. +... ...+.+ +++.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~--t~----------~~~~---~~~~~~--------------~~~~ 65 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVP--TV----------FDHY---AVSVTV--------------GGKQ 65 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCC--SS----------CCCE---EEEEES--------------SSCE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCC--cc----------ccee---EEEEEE--------------CCEE
Confidence 457999999999999999999976421 110000 00 0011 011222 2235
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH--HHHHHHcC--CCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~--~~~~~~~~--~~p~ilviNKiD~~ 163 (832)
+.++||||||+.+|.......++.+|++|+|+|+++....+... .+..+... ++|+++|+||+|+.
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 78999999999999888888899999999999999865444332 22333333 78999999999987
No 135
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=127.57 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=77.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|..|+|||||+++|+...-... +.+ |+.... ...+. .+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~~~-------t~~~~~-~~~~~------------~~~~ 70 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEG-----------YDP-------TVENTY-SKIVT------------LGKD 70 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSC-----------CCC-------CSEEEE-EEEEC----------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCC-----------CCC-------ccceEE-EEEEE------------ECCE
Confidence 4568999999999999999999976432110 000 111111 01111 1224
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH----cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~~p~ilviNKiD~~ 163 (832)
.+.++||||||+.+|.......++.+|++++|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 67899999999999988888899999999999999976544443333 2222 2378999999999986
No 136
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.31 E-value=2.4e-12 Score=129.81 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=60.0
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC-
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN- 96 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (832)
...+|+++|+.|+|||||+++|+........ ++.+ .+.++.....+.+. +.
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---------~~~~-----t~~~~~~~~~~~~~--------------~~~ 70 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLK---------DYAM-----TSGVEVVVAPVTIP--------------DTT 70 (208)
T ss_dssp EEEEEEEC------------------------------------------------CEEEECT--------------TSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccC---------CCCC-----ccceEEEEEEEEEC--------------Ccc
Confidence 3469999999999999999999654111111 0000 00111112222222 22
Q ss_pred -ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc------CCCCeEEEEECCCcc
Q 003305 97 -EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 -~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~------~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|.......++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+.
T Consensus 71 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 71 VSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp EEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred cEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 57899999999999998888889999999999999987654443333 33332 478999999999987
No 137
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.31 E-value=4.8e-12 Score=123.10 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=68.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|+......... ...+.......+.+ ++..+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~--------------~~~~~ 51 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE----------------MENSEDTYERRIMV--------------DKEEV 51 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEE--------------TTEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc----------------CCCcCCeeeEEEEE--------------CCeEE
Confidence 4689999999999999999995432211110 00111111112222 22367
Q ss_pred EEEEEeCCCCCCcHH-HHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHHc----CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~-~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.++.. .....++.+|++++|+|+++........ .+..+.. .++|+++++||+|+.
T Consensus 52 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred EEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 899999999999876 4445678899999999998854333322 2222222 378999999999986
No 138
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.31 E-value=2.6e-12 Score=126.96 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=78.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|+...- ...... +. +.+. ...+.+ ++...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~--t~----------~~~~---~~~~~~--------------~~~~~ 53 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIP--TV----------FDNY---SANVMV--------------DGKPV 53 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCC--CS----------CCEE---EEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCC--cc----------ccee---EEEEEE--------------CCEEE
Confidence 46899999999999999999975321 110000 00 0011 111112 22367
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHHcC--CCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~~~--~~p~ilviNKiD~~ 163 (832)
.+.+|||||+.+|.......++.+|++++|+|++++...+... .| ..+... +.|+++|+||+|+.
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (186)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred EEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc
Confidence 8889999999999888888899999999999999865554432 23 333332 78999999999986
No 139
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.31 E-value=5.3e-12 Score=131.13 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=73.6
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
....++|+++|+.|+|||||+++|+........ ....++|.......+.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~--------------- 76 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSG--------------TAAKSITKKCEKRSSSWK--------------- 76 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEET---------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccC--------------CCCCceeeeEEEEEEEeC---------------
Confidence 346789999999999999999999654321111 111234555544555554
Q ss_pred CceEEEEEeCCCCCCc-----------HHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHH-----cCCCCeEEEEEC
Q 003305 96 NEYLINLIDSPGHVDF-----------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNK 159 (832)
Q Consensus 96 ~~~~i~liDTPGh~df-----------~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~-----~~~~p~ilviNK 159 (832)
+..++||||||+.+. ...+..+.+.+|++|+|+|+..... .....+..+. ....|+++|+||
T Consensus 77 -~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 77 -ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp -TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred -CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 679999999997653 2223334456799999999875333 3333333222 234589999999
Q ss_pred CCcc
Q 003305 160 MDRC 163 (832)
Q Consensus 160 iD~~ 163 (832)
+|+.
T Consensus 155 ~D~~ 158 (239)
T 3lxx_A 155 KDDL 158 (239)
T ss_dssp GGGC
T ss_pred CccC
Confidence 9986
No 140
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.31 E-value=2.8e-12 Score=146.12 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=65.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|++|+|||||+++|+.....+... ..|+|.+.....+.+. ++.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~---------------~~gtT~d~~~~~i~~~----------------g~~ 282 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSH---------------MPGTTRDYIEECFIHD----------------KTM 282 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCceEEEEEEEEEEC----------------CeE
Confidence 469999999999999999996543222211 1234555444445554 688
Q ss_pred EEEEeCCCCCCcHHHH--------HHHhhccCcEEEEEcCCCccch----hHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEV--------TAALRITDGALVVVDCIEGVCV----QTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~--------~~~l~~~D~ailVvda~~g~~~----qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++||||||+.++...+ ...++.+|++++|+|++++... ....++..+ .++|+++|+||+|+.
T Consensus 283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRA 356 (476)
T ss_dssp EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSC
T ss_pred EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCC
Confidence 9999999998876443 3357889999999999998876 334444433 278999999999987
No 141
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.31 E-value=3.5e-13 Score=135.66 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+...+|+++|+.|+|||||+++|+... ...+....++.......+.+. ++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~--------------~~ 80 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT----------------YTESYISTIGVDFKIRTIELD--------------GK 80 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC----------------CCCHHHHHHCCSEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC----------------CCCCcCCcccceEEEEEEEEC--------------CE
Confidence 456899999999999999999983211 011111222333333333332 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHcC---CCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE---RIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---~~p~ilviNKiD~~ 163 (832)
.+.++||||||+.+|.......++.+|++|+|+|+++....+....| ..+... ++|+++|+||+|+.
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 57899999999999988888889999999999999987655444333 333332 67899999999986
No 142
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.30 E-value=6.2e-12 Score=124.72 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=78.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 95 (832)
....+|+++|+.|+|||||+++|+...-.. ++.+ |+.... ..+.+ ++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-----------~~~~-------t~~~~~~~~~~~--------------~~ 52 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE-----------NYVP-------TVFENYTASFEI--------------DT 52 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------SCCC-------CSEEEEEEEEEC--------------SS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC-----------CCCC-------ccceeEEEEEEE--------------CC
Confidence 446799999999999999999997642110 0000 111110 11111 23
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHH-HHHHc--CCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
....+.||||||+.+|.......++.+|++|+|+|+++....... ..| ..+.. .+.|+++++||+|+.
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 467899999999999987777888999999999999986554432 233 22222 478999999999986
No 143
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.30 E-value=2.4e-11 Score=129.02 Aligned_cols=122 Identities=16% Similarity=0.246 Sum_probs=75.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..||+++|++|+|||||+|+|+......... .+ .......++++......+.+. +...
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-~~-------~~~~~~~t~~~~~~~~~~~~~--------------~~~~ 65 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PG-------PSHRIKKTVQVEQSKVLIKEG--------------GVQL 65 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC----------------CCE
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCC-CC-------cccccCCceEEEEEEEEEecC--------------CeEE
Confidence 4699999999999999999995432221110 00 000112233333333333222 2245
Q ss_pred EEEEEeCCCCCCcHH-------HH-------HHHhhc-------------cCcEEEEEcCC-CccchhHHHHHHHHHcCC
Q 003305 99 LINLIDSPGHVDFSS-------EV-------TAALRI-------------TDGALVVVDCI-EGVCVQTETVLRQALGER 150 (832)
Q Consensus 99 ~i~liDTPGh~df~~-------~~-------~~~l~~-------------~D~ailVvda~-~g~~~qt~~~~~~~~~~~ 150 (832)
.++||||||+.++.. .+ ...++. +|+++++|+.+ .+.......+++.+.. +
T Consensus 66 ~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~ 144 (274)
T 3t5d_A 66 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-K 144 (274)
T ss_dssp EEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-T
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-c
Confidence 899999999965421 11 333333 67888888665 4888888888888766 8
Q ss_pred CCeEEEEECCCcc
Q 003305 151 IRPVLTVNKMDRC 163 (832)
Q Consensus 151 ~p~ilviNKiD~~ 163 (832)
+|+|+|+||+|+.
T Consensus 145 ~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 145 VNIIPLIAKADTL 157 (274)
T ss_dssp SCEEEEESSGGGS
T ss_pred CCEEEEEeccCCC
Confidence 9999999999976
No 144
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.5e-12 Score=132.00 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=78.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|+.|+|||||+++|+........ ...++.......+.+. ++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~ 60 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS----------------KSTIGVEFATRTLEIE--------------GK 60 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEET--------------TE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC--------------CE
Confidence 45679999999999999999999764321110 0011111112222232 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|...+...++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 47899999999999988888899999999999999987655543333 2332 2368899999999986
No 145
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.29 E-value=6.9e-12 Score=125.16 Aligned_cols=129 Identities=17% Similarity=0.234 Sum_probs=80.3
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|+.|+|||||+++|+........ ... ..+++. .+ .
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~--------~~~-----~~~~~~-------~~----------------~ 89 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--------VSQ-----EPLSAA-------DY----------------D 89 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CC----------------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccc--------ccC-----CCceee-------ee----------------c
Confidence 34579999999999999999999764311100 000 000111 11 2
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhc----cCcEEEEEcCC-CccchhH-HHHHHHHH-------cCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI-EGVCVQT-ETVLRQAL-------GERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~----~D~ailVvda~-~g~~~qt-~~~~~~~~-------~~~~p~ilviNKiD~~ 163 (832)
...+.+|||||+.+|...+...++. +|++|+|+|++ ..-.... ...+.... ..+.|+++|+||+|+.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 5678899999999987766666665 89999999998 3222111 11122221 1478999999999987
Q ss_pred cccccC-CHHHHHHHHHHHHHHh
Q 003305 164 FLELQV-DGEEAYQTFSRVVENA 185 (832)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~~~~~~ 185 (832)
.. ..+++.+.+++.+..+
T Consensus 170 ----~~~~~~~~~~~l~~~l~~l 188 (193)
T 2ged_A 170 ----TARPPSKIKDALESEIQKV 188 (193)
T ss_dssp ----TCCCHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHHH
Confidence 43 4556555555555443
No 146
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.29 E-value=1.8e-11 Score=125.96 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=74.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|..|+|||||+++|+...-. ..+ ..+.|.......+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~----------~~~------~~~~t~~~~~~~~~~~---------------- 74 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD----------VQS------YSFTTKNLYVGHFDHK---------------- 74 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE----------EEC------C-----CEEEEEEEET----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc----------cCC------CCCcceeeeeeeeecC----------------
Confidence 45689999999999999999999543210 011 1122333322223332
Q ss_pred ceEEEEEeCCCCCCc---------HHHHHHHhhccCcEEEEEcCCCccchh---HHHHHHHHHcC--CCCeEEEEECCCc
Q 003305 97 EYLINLIDSPGHVDF---------SSEVTAALRITDGALVVVDCIEGVCVQ---TETVLRQALGE--RIRPVLTVNKMDR 162 (832)
Q Consensus 97 ~~~i~liDTPGh~df---------~~~~~~~l~~~D~ailVvda~~g~~~q---t~~~~~~~~~~--~~p~ilviNKiD~ 162 (832)
+..+.||||||+.++ ...+....+.+|++|+|+|+++..... ....+..+... ++|+++|+||+|+
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 154 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDK 154 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGG
T ss_pred CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCccc
Confidence 578999999999432 122334467889999999999865533 23344555554 7899999999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 155 ~ 155 (228)
T 2qu8_A 155 C 155 (228)
T ss_dssp C
T ss_pred C
Confidence 6
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.29 E-value=3e-12 Score=145.32 Aligned_cols=111 Identities=20% Similarity=0.294 Sum_probs=74.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|++|+|||||+++|+.....+.....| +|.+.....+.+. +..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g---------------tT~d~~~~~i~~~----------------g~~ 273 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG---------------TTRDVVESQLVVG----------------GIP 273 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTT---------------CCHHHHHHEEEET----------------TEE
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---------------eeEEEEEEEEEEC----------------CEE
Confidence 469999999999999999998875443332222 3333332333343 678
Q ss_pred EEEEeCCCCCCcHHHHH--------HHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVT--------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~--------~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++||||||+.++...+. ..++.+|++++|+|++++...+...+++.+. ..|+++|+||+|+.
T Consensus 274 v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~ 343 (462)
T 3geh_A 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLV 343 (462)
T ss_dssp EEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSS
T ss_pred EEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCC
Confidence 99999999987654433 3567899999999999998888877777654 36999999999987
No 148
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.28 E-value=6.7e-12 Score=127.41 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=77.3
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
...+|+++|+.|+|||||+++|+...- .. ++.+ |+... ...+.+ ++.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~---------~~~~-------t~~~~~~~~~~~--------------~~~ 55 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PT---------DYIP-------TVFDNFSANVAV--------------DGQ 55 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CS---------SCCC-------SSCCCEEEEEEC--------------SSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--Cc---------cCCC-------ccceeEEEEEEE--------------CCE
Confidence 457999999999999999999975421 11 0000 11100 011111 224
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHHc--CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
.+.+.||||||+.+|.......++.+|++|+|+|+++........ .| ..+.. .++|+++|+||+|+.
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 678999999999999888888899999999999999865544432 23 33333 278999999999986
No 149
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=135.23 Aligned_cols=109 Identities=18% Similarity=0.145 Sum_probs=73.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+|+|+.|+|||||+++|+... . ....+ |+......+.+. +..
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~-----------~-~~~~p-------T~~~~~~~~~~~----------------~~~ 210 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE-----------I-VTTIP-------TIGFNVETVEYK----------------NIS 210 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC-----------C-EEEEE-------ETTEEEEEEEET----------------TEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCC-----------C-CCccc-------ccceEEEEEecC----------------cEE
Confidence 489999999999999999993211 1 11011 333333344443 789
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH--HHHHHHHc---CCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~--~~~~~~~~---~~~p~ilviNKiD~~ 163 (832)
++||||||+.+|.......++.+|++|+|+|+++....... .+...... .++|+++|+||+|+.
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 99999999999999999999999999999999875443322 22222222 378999999999987
No 150
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.28 E-value=1.5e-11 Score=134.71 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=42.3
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+++.++||||||+.++... ..+.+|++++|+|+..+...+.... ...++|.++|+||+|+.
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGD 207 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTT
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCC
Confidence 3678999999999887654 3589999999999987644332111 11256899999999986
No 151
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=7.5e-12 Score=126.77 Aligned_cols=115 Identities=14% Similarity=0.065 Sum_probs=77.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+........ .+ ..+.+.. ..+.+ +++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------~~---t~~~~~~---~~~~~--------------~~~~ 72 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY-----------VP---TVFENYV---ADIEV--------------DGKQ 72 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEE--------------TTEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC-----------CC---cccceEE---EEEEE--------------CCEE
Confidence 3469999999999999999999764321100 00 0011110 11112 1235
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH--HHHHHHHc--CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~--~~~~~~~~--~~~p~ilviNKiD~~ 163 (832)
..+.||||||+.+|.......++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+.
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence 7899999999999988888889999999999999875443332 22233333 378999999999987
No 152
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.28 E-value=5.7e-12 Score=143.65 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=85.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|.+|+|||||+++|+.....+.....| +|.+.....+.+. +..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~g---------------TT~d~~~~~i~~~----------------g~~ 292 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG---------------TTRDVISEEIVIR----------------GIL 292 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC---------------CSSCSCCEEEEET----------------TEE
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCC---------------eeeeeEEEEEecC----------------CeE
Confidence 589999999999999999998765433222222 3444433444443 678
Q ss_pred EEEEeCCCCC-CcH--------HHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHV-DFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~-df~--------~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++||||||+. ++. ..+...++.+|++|+|+|++++...+...+++.+ .+.|+++|+||+|+.
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 9999999998 653 3356788999999999999998877777777665 478999999999986
No 153
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.27 E-value=1.1e-11 Score=125.71 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=78.6
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERN 94 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~ 94 (832)
.....+|+++|..|+|||||+++|+...-.. ++.+ |+.... ..+.+ +
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-----------~~~~-------t~~~~~~~~~~~--------------~ 72 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPE-----------NYVP-------TVFENYTASFEI--------------D 72 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------SCCC-------CSEEEEEEEEES--------------S
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------CcCC-------ccceeEEEEEEE--------------C
Confidence 3456799999999999999999997642110 0000 111111 11111 2
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHH-HHHHc--CCCCeEEEEECCCcc
Q 003305 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
++...+.||||||+.+|.......++.+|++|+|+|+++....... ..| ..+.. .+.|+++|+||+|+.
T Consensus 73 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 73 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 3467899999999999987777788999999999999986544432 223 22322 468899999999986
No 154
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=4.6e-11 Score=119.63 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=76.0
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
...+|+++|+.|+|||||+++|+...-... +.+ |+... ...+.+ ++.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-----------~~~-------t~~~~~~~~~~~--------------~~~ 74 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE-----------YDP-------TLESTYRHQATI--------------DDE 74 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-----------CCT-------TCCEEEEEEEEE--------------TTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-----------cCC-------CCCceEEEEEEE--------------CCE
Confidence 456999999999999999999976431110 000 11110 011112 223
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-----HHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+ .......++.+|++++|+|+++....... .+.......++|+++|+||+|+.
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 67899999999998 66778888999999999999874333221 12222223578999999999986
No 155
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.27 E-value=7.7e-12 Score=127.50 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=63.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCCC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
+..+|+++|+.|+|||||+++|+...- .. ++.+ |+... ...+.+ +++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~---------~~~~-------t~~~~~~~~~~~--------------~~~ 80 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PE---------SYTP-------TVFERYMVNLQV--------------KGK 80 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC------------------CC-------CCCEEEEEEEEE--------------TTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CC---------CCCC-------ccceeEEEEEEE--------------CCE
Confidence 457999999999999999999964321 00 0000 11100 111122 223
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHHc--CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|.......++.+|++++|+|+++....+... .| ..+.. .++|+++|+||+|+.
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 568999999999999988888999999999999999865544432 23 22222 378999999999987
No 156
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.27 E-value=6e-12 Score=126.56 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=76.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeee-eEEEEeeccchhhccccCcCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
....+|+++|+.|+|||||+++|+... ... ++.+ |+... ...+.+ ++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~---------~~~~-------t~~~~~~~~~~~--------------~~ 65 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPT---------EYIP-------TAFDNFSAVVSV--------------DG 65 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-------------------C-------CSSEEEEEEEEE--------------TT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCC---------CCCC-------cccceeEEEEEE--------------CC
Confidence 446799999999999999999996432 111 0000 11100 111222 12
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHHc--CCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
..+.+.||||||+.+|.......++.+|++|+|+|+++........ .| ..+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 66 RPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp EEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred EEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 3568889999999999887778889999999999999865544432 22 22322 378999999999987
No 157
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.27 E-value=2.4e-12 Score=126.94 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=72.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+...- .....+ |+.... ...+. .++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~----------------t~~~~~-~~~~~------------~~~~~ 55 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVP----------------TVFDNF-SANVV------------VNGAT 55 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C--------------------------C-BCCCC-----------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCC----------------eeeeeE-EEEEE------------ECCEE
Confidence 346899999999999999999975431 110000 110000 00000 11235
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHHc--CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
..+.||||||+.+|.......++.+|++++|+|+++....+... .| ..+.. .++|+++++||+|+.
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 67889999999999988888999999999999998865544432 23 23322 378999999999986
No 158
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.27 E-value=5.2e-12 Score=127.33 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=77.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|......... .+ .++.... ..+.+ +++..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------~~-----t~~~~~~-~~~~~--------------~~~~~ 73 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY-----------VP-----TVFENYI-ADIEV--------------DGKQV 73 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSC-----------CC-----SSCCCCE-EEEEE--------------TTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCccc-----------CC-----cccceEE-EEEEE--------------CCEEE
Confidence 469999999999999999999764321100 00 0011100 11122 12356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH--HHHHHHHcC--CCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~--~~~~~~~~~--~~p~ilviNKiD~~ 163 (832)
.+.||||||+.+|.......++.+|++++|+|+++....+.. ..+..+... ++|+++|+||+|+.
T Consensus 74 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred EEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 899999999999988888889999999999999875443332 222333332 78999999999987
No 159
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.27 E-value=1.1e-11 Score=126.49 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=78.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCCC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
...+|+++|..|+|||||+++|+...-... +.+ |+.... ..+.+ +++
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~-----------~~~-------t~~~~~~~~~~~--------------~~~ 73 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPET-----------YVP-------TVFENYTACLET--------------EEQ 73 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------CCC-------CSEEEEEEEEEC----------------C
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------cCC-------eeeeeEEEEEEE--------------CCE
Confidence 356999999999999999999976431110 000 111111 11111 234
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhH-HHHH-HHHHc--CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL-RQALG--ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt-~~~~-~~~~~--~~~p~ilviNKiD~~ 163 (832)
.+.+.||||||+.+|.......++.+|++|+|+|+++...... ...| ..+.. .++|+++|+||+|+.
T Consensus 74 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 74 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred EEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 6789999999999998888888999999999999998655544 2333 33333 378999999999986
No 160
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.26 E-value=2.4e-11 Score=120.94 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=73.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeee-EEEEeeccchhhccccCcCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 95 (832)
....+|+++|..|+|||||+++|+...-. . ++.+ |+.... ....+ ++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~---------~~~~-------t~~~~~~~~~~~--------------~~ 66 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI--S---------EYDP-------NLEDTYSSEETV--------------DH 66 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC--S---------CCCT-------TCCEEEEEEEEE--------------TT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC--c---------ccCC-------CccceeeEEEEE--------------CC
Confidence 34579999999999999999999764311 0 0000 111110 11111 22
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc------CCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~------~~~p~ilviNKiD~~ 163 (832)
+...+.||||||+.+|.. +...++.+|++++|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp EEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred EEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 367899999999998875 46788999999999999975544433222 22222 578999999999986
No 161
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.25 E-value=8.1e-12 Score=132.22 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=75.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|++|+|||||+++|....-. .+ ++ .|+|+......+ . . +.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-----v~-----~~------pg~tv~~~~~~~--~--------------~-~~ 49 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-----VG-----NW------PGVTVERKSGLV--K--------------K-NK 49 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-----CC-----SS------SCCCCSCEEEEC--T--------------T-CT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-----cc-----CC------CCCcEEEEEEEE--e--------------c-CC
Confidence 468999999999999999999543211 11 11 155554433222 1 1 45
Q ss_pred EEEEEeCCCCCCcHH------HHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSS------EVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~------~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+++|||||+.+|.. .....++ .+|++++|+|++.. ......+.++...++|+++++||+|+.
T Consensus 50 ~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 50 DLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp TEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred eEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 799999999998852 2334444 59999999999873 222334456666799999999999975
No 162
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.25 E-value=7.5e-11 Score=117.14 Aligned_cols=110 Identities=14% Similarity=0.179 Sum_probs=75.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|..|+|||||+++|+...-.. .+.+ |.......+.+. +.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-----------~~~~-------t~~~~~~~~~~~--------------~~ 65 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQ-----------EESP-------EGGRFKKEIVVD--------------GQ 65 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCC-----------CCCT-------TCEEEEEEEEET--------------TE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------CcCC-------CcceEEEEEEEC--------------CE
Confidence 445799999999999999999996542110 0011 111001122222 23
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHH-HHHHHHHc----CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~-~~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|. .++.+|++++|+|+++....+.. ..+..+.. .++|+++++||+|+.
T Consensus 66 ~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred EEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5788999999999987 77889999999999987665553 33334433 367999999999984
No 163
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.25 E-value=4.3e-11 Score=122.22 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=78.3
Q ss_pred cCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCC
Q 003305 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (832)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (832)
+.+..+|+++|..|+|||||+++++...- .. ++. -|+.......... .++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f--~~---------~~~-------~Tig~d~~~k~~~------------~~~ 59 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSF--DN---------TYQ-------ATIGIDFLSKTMY------------LED 59 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCC--C--------------------------CEEEEEE------------CSS
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCC--CC---------CcC-------CccceEEEEEEEE------------ecc
Confidence 33446899999999999999999965321 00 000 1222211111111 123
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HH---HHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQ---ALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~---~~~~~~p~ilviNKiD~~ 163 (832)
..+.+.||||+|.++|.......++.+|++++|+|.++..+.....-| .. ....++|++||.||+|+.
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 467899999999999999999999999999999999986554443223 22 223567899999999986
No 164
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.24 E-value=2.5e-11 Score=140.96 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=57.7
Q ss_pred eEEEEEeCCCCCC-----------cHHHHHHHhhccCcEEEEEcCCC-ccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~d-----------f~~~~~~~l~~~D~ailVvda~~-g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..++||||||+.+ |...+..+++.+|++|+|+|++. +...+...+++.+...+.|+++|+||+|+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 4689999999986 67778888999999999999988 677788888888777788999999999976
No 165
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.23 E-value=9.6e-11 Score=115.05 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=72.4
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|..|+|||||+++|+...-.. +.+ .-+... ...+.+ +++.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~------------~~~---t~~~~~---~~~~~~--------------~~~~ 53 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV------------LEK---TESEQY---KKEMLV--------------DGQT 53 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC------------CSS---CSSSEE---EEEEEE--------------TTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC------------cCC---CcceeE---EEEEEE--------------CCEE
Confidence 45689999999999999999996642110 000 001111 111122 1235
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH----HHHHc---CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALG---ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~----~~~~~---~~~p~ilviNKiD~~ 163 (832)
..++||||||+.+ ...++.+|++|+|+|+++.........| ..... .++|+++++||+|+.
T Consensus 54 ~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 54 HLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 7899999999987 3567889999999999986655544433 22222 367899999999984
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.22 E-value=3.9e-11 Score=128.65 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=53.7
Q ss_pred ceEEEEEeCCCCC-------------CcHHHHHHHhhccCcEE-EEEcCCCccchhHH-HHHHHHHcCCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHV-------------DFSSEVTAALRITDGAL-VVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~-------------df~~~~~~~l~~~D~ai-lVvda~~g~~~qt~-~~~~~~~~~~~p~ilviNKiD 161 (832)
...++||||||+. .+...+..+++.+|.+| +|+|++.+...+.. .+++.+...+.|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 3689999999974 24455667888888877 69999998887764 466777677899999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 204 l~ 205 (299)
T 2aka_B 204 LM 205 (299)
T ss_dssp GS
T ss_pred cC
Confidence 87
No 167
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.21 E-value=6.1e-11 Score=119.01 Aligned_cols=117 Identities=17% Similarity=0.125 Sum_probs=75.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|..|+|||||+++|......... . .+++.......+.+. ++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--------------~--~~~~~~~~~~~~~~~--------------~~ 70 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH--------------E--PENPEDTYERRIMVD--------------KE 70 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGG--------------T--TTSCTTEEEEEEEET--------------TE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccC--------------C--CCcccceEEEEEEEC--------------CE
Confidence 45679999999999999999999432211110 0 111211111122222 23
Q ss_pred ceEEEEEeCCCCCCcHH-HHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc----CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~-~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~----~~~p~ilviNKiD~~ 163 (832)
...+.+|||||+.++.. .....++.+|++|+|+|+++........-| ..+.. .++|+++|.||+|+.
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 57889999999998865 445667899999999999875443332222 22222 478999999999986
No 168
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.81 E-value=1.9e-12 Score=130.78 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=78.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
.+..+|+++|+.|+|||||+++|+...- ...... .+.......+.+ ++.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~---------------t~~~~~~~~~~~--------------~~~ 76 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIP---------------TVFDNYSANVMV--------------DGK 76 (204)
Confidence 3456999999999999999999964321 100000 000000001111 123
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHHcC--CCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~~~--~~p~ilviNKiD~~ 163 (832)
...+.||||||+.+|.......++.+|++++|+|+++....+... .| ..+... ++|+++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 567889999999999988888999999999999998876554432 23 333333 78999999999987
No 169
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.17 E-value=6.5e-11 Score=136.56 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=82.1
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
+..+|+++|.+|+|||||+++|+..... . .. -|+......+.+. +
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~----------~~-------~T~~~~~~~~~~~----------------~ 365 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--T----------TI-------PTVGFNVETVTYK----------------N 365 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--C----------CC-------CCSSEEEEEEESS----------------S
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--C----------cC-------CccceeEEEEEeC----------------C
Confidence 4579999999999999999999764311 0 00 1333333334443 6
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HHHHHHc----CCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~~~~~~----~~~p~ilviNKiD~~ 163 (832)
+.++||||||+.+|...+..+++.+|++|+|+|+++....+... .+..... .++|+|+|+||+|+.
T Consensus 366 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp CEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 89999999999999988889999999999999999875544432 2233322 478999999999987
No 170
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.16 E-value=5.9e-11 Score=117.68 Aligned_cols=108 Identities=22% Similarity=0.231 Sum_probs=66.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|+.|+|||||+++|+...-. .+...|+|..... +.+ . .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~t~~~~~--~~~-----------------~-~ 45 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR----------------RGKRPGVTRKIIE--IEW-----------------K-N 45 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS----------------SSSSTTCTTSCEE--EEE-----------------T-T
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc----------------cCCCCCccceeEE--Eec-----------------C-C
Confidence 58999999999999999999643210 0111233433221 112 1 6
Q ss_pred EEEEeCCCCC-----------CcHHHHHHHhhc-c---CcEEEEEcCCCcc-----------chhHHHHHHHHHcCCCCe
Q 003305 100 INLIDSPGHV-----------DFSSEVTAALRI-T---DGALVVVDCIEGV-----------CVQTETVLRQALGERIRP 153 (832)
Q Consensus 100 i~liDTPGh~-----------df~~~~~~~l~~-~---D~ailVvda~~g~-----------~~qt~~~~~~~~~~~~p~ 153 (832)
+++|||||+. .|.......++. + ++++.|+|+.... ..++..++..+...++|+
T Consensus 46 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 125 (190)
T 2cxx_A 46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 125 (190)
T ss_dssp EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCce
Confidence 8899999953 444444444444 4 5555666654321 112233445555678999
Q ss_pred EEEEECCCcc
Q 003305 154 VLTVNKMDRC 163 (832)
Q Consensus 154 ilviNKiD~~ 163 (832)
++++||+|+.
T Consensus 126 ilv~nK~Dl~ 135 (190)
T 2cxx_A 126 IVAVNKLDKI 135 (190)
T ss_dssp EEEEECGGGC
T ss_pred EEEeehHhcc
Confidence 9999999987
No 171
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.09 E-value=1.6e-10 Score=125.50 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=79.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|..|+|||||+++|+...- .....+ .+.......+.. ++.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~---------------t~~~~~~~~~~~--------------~~~ 201 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIP---------------TVFDNYSANVMV--------------DGK 201 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCC---------------CSEEEEEEEEEE--------------TTE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCC---------------cccceeEEEEEE--------------CCE
Confidence 4457999999999999999999965421 110011 111111111112 223
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHH-HH-HHHHcC--CCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~-~~-~~~~~~--~~p~ilviNKiD~~ 163 (832)
...++||||||+.+|.......++.+|++++|+|+++....+... .| ..+... ++|+++|+||+|+.
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 567789999999999888888899999999999999876554432 22 333322 78999999999986
No 172
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.08 E-value=4.6e-10 Score=133.97 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=54.1
Q ss_pred eEEEEEeCCCCCC---cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHH-HHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVD---FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~d---f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~-~~~~~~~p~ilviNKiD~~ 163 (832)
..++||||||+.+ ....+...++.+|++|+|+|++.+........|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999765 4456678889999999999999988877776665 4445678999999999986
No 173
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.08 E-value=9.5e-10 Score=121.11 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=72.4
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
.++.|+++|++|+|||||+++|..... ... + ..+.|.+.....+.+. +
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~---------~------~~~~T~d~~~~~i~~~----------------g 225 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVD---------T------KLFTTMSPKRYAIPIN----------------N 225 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEET----------------T
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-ccc---------C------CcccccCCEEEEEEEC----------------C
Confidence 356699999999999999999954321 100 0 1123444433444554 5
Q ss_pred eEEEEEeCCCCCCc--------HHHHHHHhhccCcEEEEEcCCCcc--chh-H---HHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGV--CVQ-T---ETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df--------~~~~~~~l~~~D~ailVvda~~g~--~~q-t---~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+.++||||+.+- ...+...++.+|++++|+|+++.. ... . ..+++.....+.|+++|.||+|+.
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 78999999997431 123445678999999999998764 222 1 222333333578999999999987
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.05 E-value=5.2e-10 Score=130.11 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=78.0
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|.+|+|||||+++|....-. . +. . -|+.....+..... .....-..+++
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~---------~~---~----~t~g~~~~~~~~~~----~~~v~~~~~~~ 96 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD--P---------KE---S----QTHGLNVVTKQAPN----IKGLENDDELK 96 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------------------------CCCEEEEEGGG----SGGGTTCSTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC--C---------CC---C----CccceEEEEecccc----ccceeecCCCc
Confidence 44579999999999999999999543210 0 00 0 01111111110000 00000111234
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcC--CCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~~p~ilviNKiD~~ 163 (832)
...++++||||+..|.......++.+|++|+|+|++.. ......+..+... +.|+++|+||+|+.
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence 68999999999999988888889999999999999875 2333444455443 48999999999986
No 175
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.04 E-value=1.9e-10 Score=125.52 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=74.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
+.+|+++|.+|+|||||+++|...... +.++. ..|.......+.+. ...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~----------i~~~~------ftTl~p~~g~v~~~---------------~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPK----------IADYH------FTTLVPNLGMVETD---------------DGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCE----------ESSTT------SSCCCCCEEEEECS---------------SSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCc----------cccCC------ccccCceEEEEEeC---------------CCc
Confidence 457999999999999999999433211 11111 12333333334443 136
Q ss_pred EEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCC---ccchhH-HHHHHHHHc-----CCCCeEEEEECCCc
Q 003305 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---GVCVQT-ETVLRQALG-----ERIRPVLTVNKMDR 162 (832)
Q Consensus 99 ~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~---g~~~qt-~~~~~~~~~-----~~~p~ilviNKiD~ 162 (832)
.+.|+||||+.+ +.....+.+..+|++|+|+|+++ .-..+. ..++..+.. .++|+++|+||+|+
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl 286 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM 286 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccC
Confidence 899999999643 45566777788999999999986 222222 233334433 36899999999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 287 ~ 287 (342)
T 1lnz_A 287 P 287 (342)
T ss_dssp T
T ss_pred C
Confidence 7
No 176
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.03 E-value=8.2e-10 Score=121.90 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=51.1
Q ss_pred ceEEEEEeCCCCCCc-------------HHHHHHHhhccCcEEEEEcCCC-ccc-hhHHHHHHHHHcCCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDF-------------SSEVTAALRITDGALVVVDCIE-GVC-VQTETVLRQALGERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df-------------~~~~~~~l~~~D~ailVvda~~-g~~-~qt~~~~~~~~~~~~p~ilviNKiD 161 (832)
...++||||||..++ ...+..+++.+|++|+|+|+.. ... .....+++.+...+.|.++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999999887 5567788899999999998753 222 2334455555566889999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 215 l~ 216 (360)
T 3t34_A 215 LM 216 (360)
T ss_dssp GC
T ss_pred cC
Confidence 87
No 177
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.02 E-value=7.3e-10 Score=112.68 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=72.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|.+|+|||||+++|+.....+... +. .-|.+... ..+.+. +.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~---------~~----~~g~d~~~--~~i~~~--------------~~ 85 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD---------CE----VLGEDTYE--RTLMVD--------------GE 85 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEEE--EEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc---------CC----ccceeeEE--EEEEEC--------------Ce
Confidence 345789999999999999999996432221110 00 00111111 112221 23
Q ss_pred ceEEEEEeCCCCCCc-HHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHHc----CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df-~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~~----~~~p~ilviNKiD~~ 163 (832)
...+.++||+|.... ........+.+|++|+|+|.++.-......-| ..+.. .++|+++|.||+|+.
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 567889999998873 22233345779999999999875443333223 33332 368999999999986
No 178
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.02 E-value=7.3e-10 Score=111.25 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=76.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
..+|+++|+.|+|||||+++|......... . ..++.......+.+. +...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-----------~-----~t~~~~~~~~~i~~~--------------g~~~ 54 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-----------K-----STIGVEFATRSIQVD--------------GKTI 54 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEET--------------TEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC-----------C-----CccceeEEEEEEEEC--------------CEEE
Confidence 578999999999999999999654321110 0 001111112223332 2356
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
.+.++||||+..|........+.+|++++|+|.++.........| ..+. ..+.|+++++||+|+.
T Consensus 55 ~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 55 KAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp EEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 788999999998877777778899999999999876554433223 2222 2467888999999986
No 179
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.02 E-value=2.8e-10 Score=112.83 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=70.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|..|+|||||+++|........ + ++ ...+.+......+.+. ..+++...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~----~-----~~-----~~t~g~~~~~~~~~~~-----------~~~~~~~~ 57 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL----G-----MQ-----SATVGIDVKDWPIQIR-----------DKRKRDLV 57 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC--------------------CE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC----C-----Cc-----ceeccEEeEEeeeccc-----------cCCCCceE
Confidence 4799999999999999999943211100 0 00 0001111111111110 00123678
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-chhHHHHH-HHHH--cCCCCeEEEEECCCcc
Q 003305 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 100 i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-~~qt~~~~-~~~~--~~~~p~ilviNKiD~~ 163 (832)
+.+|||||+.+|.......++.+|++++|+|.+++. .......| ..+. ..+.|+++|.||+|+.
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp EEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred EEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 999999999888777777888999999999998863 22222222 2222 2368888999999986
No 180
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.02 E-value=7.5e-10 Score=121.83 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=48.7
Q ss_pred ceEEEEEeCCCCCC-------------cHHHHHHHhhccC-cEEEEEcCCCccchhHH-HHHHHHHcCCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVD-------------FSSEVTAALRITD-GALVVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~d-------------f~~~~~~~l~~~D-~ailVvda~~g~~~qt~-~~~~~~~~~~~p~ilviNKiD 161 (832)
...++||||||..+ +...+..+++.++ .+++|+|+..+...+.. .+++.+...+.|.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 46899999999743 2334455665554 45557788777776665 367777777899999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 209 l~ 210 (353)
T 2x2e_A 209 LM 210 (353)
T ss_dssp GS
T ss_pred cc
Confidence 87
No 181
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.02 E-value=1.1e-09 Score=110.56 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=71.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+.... ... .....|.|.... .+.+. +
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-----------~~~---~~~~~G~~~~~~--~~~~~----------------~ 72 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-----------LAR---TSKTPGRTQLIN--LFEVA----------------D 72 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEE--EEEEE----------------T
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-----------ccc---ccCCCccceeeE--EEEec----------------C
Confidence 446899999999999999999932210 000 001123333211 12222 2
Q ss_pred eEEEEEeCCCCCCc----------HHHHHHH---hhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDF----------SSEVTAA---LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df----------~~~~~~~---l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.++||||+.+. ...+... .+.+|++++|+|+..+.......+.+.+...++|.+++.||+|+.
T Consensus 73 -~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 73 -GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp -TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred -CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 5789999998642 2222222 357899999999998877666566666667889999999999976
No 182
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.02 E-value=1.4e-09 Score=119.97 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=72.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
....+|+++|++|+|||||+++|...... ..+ ..+.|.......+.+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~----------~~~------~~~~t~~~~~~~~~~~---------------- 212 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE----------IAS------YPFTTRGINVGQFEDG---------------- 212 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE----------EEC------CTTCSSCEEEEEEEET----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc----------cCC------CCCeeeceeEEEEEec----------------
Confidence 35679999999999999999999432210 000 1122333322233332
Q ss_pred ceEEEEEeCCCCCCcHH--------HHHHHh-hccCcEEEEEcCCCcc--chhHH-HHHHHHHc--CCCCeEEEEECCCc
Q 003305 97 EYLINLIDSPGHVDFSS--------EVTAAL-RITDGALVVVDCIEGV--CVQTE-TVLRQALG--ERIRPVLTVNKMDR 162 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~--------~~~~~l-~~~D~ailVvda~~g~--~~qt~-~~~~~~~~--~~~p~ilviNKiD~ 162 (832)
+..+.+|||||+.++.. ....++ ..+|++++|+|++.+. ..... ..+..+.. .+.|+++|+||+|+
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 57899999999876421 222233 3689999999988743 33332 33333332 27899999999997
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 293 ~ 293 (357)
T 2e87_A 293 A 293 (357)
T ss_dssp C
T ss_pred C
Confidence 6
No 183
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.99 E-value=7.6e-10 Score=118.76 Aligned_cols=110 Identities=14% Similarity=0.185 Sum_probs=72.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceEE
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (832)
+|.++|..|+|||||+.++... .... +...-+.|+......+ . +..++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~--~~~~-------------~~~~~~~Tig~~~~~v--~---------------~~v~L 48 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN--MQPL-------------DTLYLESTSNPSLEHF--S---------------TLIDL 48 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC--CCSG-------------GGTTCCCCCSCCCEEE--C---------------SSSCE
T ss_pred CEEEECCCCCCHHHHHHHHHcC--CCCC-------------ccceecCeeeeeeEEE--c---------------cEEEE
Confidence 4789999999999999876321 1100 0001122333332222 1 24689
Q ss_pred EEEeCCCCCCcHH---HHHHHhhccCcEEEEEcCCCccchhHHHHH----HHHH--cCCCCeEEEEECCCcc
Q 003305 101 NLIDSPGHVDFSS---EVTAALRITDGALVVVDCIEGVCVQTETVL----RQAL--GERIRPVLTVNKMDRC 163 (832)
Q Consensus 101 ~liDTPGh~df~~---~~~~~l~~~D~ailVvda~~g~~~qt~~~~----~~~~--~~~~p~ilviNKiD~~ 163 (832)
+||||||+++|.. .....++.++++|+|+|+++. .......| ..+. ..++|+++++||+|+.
T Consensus 49 qIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 49 AVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp EEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred EEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 9999999999964 457788999999999999986 33333333 2222 2468899999999987
No 184
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.98 E-value=1.5e-09 Score=108.55 Aligned_cols=117 Identities=20% Similarity=0.179 Sum_probs=70.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|.+|+|||||+++|+.....+... +.+ -|.+... ..+.++ +..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~---------~~~----~~~~~~~--~~~~~~--------------~~~ 55 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD---------XEV----LGEDTYE--RTLMVD--------------GES 55 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-------------GG----GCTTEEE--EEEEET--------------TEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc---------ccc----cceeEEE--EEEEEC--------------CeE
Confidence 35789999999999999999997643322210 000 1111111 122222 235
Q ss_pred eEEEEEeCCCCCC-cHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH----cCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~d-f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~----~~~~p~ilviNKiD~~ 163 (832)
..+.++||+|... +.......++.+|++++|+|.++.-.......| ..+. ..++|++++.||+|+.
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 6778999999765 222233456789999999999875444333222 2222 2468999999999976
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.96 E-value=2e-09 Score=118.62 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=62.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|+....... + +.+....+...++++......+.+. +..
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~----~---~~~~~~~~~~~ti~~~~~~~~~~~~--------------~~~ 94 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPE----R---VIPGAAEKIERTVQIEASTVEIEER--------------GVK 94 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC------------------CEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCC----C---cccCCCcccCCceeEEEEEEEeecC--------------Ccc
Confidence 346899999999999999999844321110 1 1111111222233332222222211 124
Q ss_pred eEEEEEeCCCCCCcHH-------HHH-------HHhhcc-------------CcEEEEEcC-CCccchhHHHHHHHHHcC
Q 003305 98 YLINLIDSPGHVDFSS-------EVT-------AALRIT-------------DGALVVVDC-IEGVCVQTETVLRQALGE 149 (832)
Q Consensus 98 ~~i~liDTPGh~df~~-------~~~-------~~l~~~-------------D~ailVvda-~~g~~~qt~~~~~~~~~~ 149 (832)
..+++|||||+.|+.. .+. ..++.+ |+++++|+. ..+.......+++.+ ..
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~ 173 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HN 173 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-cc
Confidence 5799999999955432 121 344433 357777776 556666555555443 56
Q ss_pred CCCeEEEEECCCcc
Q 003305 150 RIRPVLTVNKMDRC 163 (832)
Q Consensus 150 ~~p~ilviNKiD~~ 163 (832)
++|+|+|+||+|+.
T Consensus 174 ~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 174 KVNIVPVIAKADTL 187 (361)
T ss_dssp -SCEEEEEECCSSS
T ss_pred CCCEEEEEECCCCC
Confidence 78999999999976
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.94 E-value=9.2e-10 Score=122.59 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=25.0
Q ss_pred ceEEEEEeCCCCCCcH-------HHHHHHhhccCcEEEEEcCCCc
Q 003305 97 EYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIEG 134 (832)
Q Consensus 97 ~~~i~liDTPGh~df~-------~~~~~~l~~~D~ailVvda~~g 134 (832)
...++||||||+.+.. .....+++.+|++++|+|+.++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 4679999999987532 1223457899999999999885
No 187
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.91 E-value=3e-09 Score=106.19 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=76.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
...+|+++|+.|+|||||+++|......... ...++.......+.+. ++.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~~~i~~~--------------g~~ 77 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVD--------------GKT 77 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC----------------CCCCSEEEEEEEEEET--------------TEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceEEEEEEEEEC--------------CEE
Confidence 4578999999999999999999654321100 0011222122223332 224
Q ss_pred eEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH-HHHH---cCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~~p~ilviNKiD~~ 163 (832)
..+.++||||+..|...+...++.+|++++|+|.++....+....| ..+. ..+.|+++++||+|+.
T Consensus 78 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 5677899999999888777888899999999999875443322222 2222 2467888999999986
No 188
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.88 E-value=4.3e-09 Score=115.62 Aligned_cols=112 Identities=19% Similarity=0.292 Sum_probs=79.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
.-+|+|+|.+|+|||||+|+|......+.. .+ +.|+......+.+. +.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~-~p---------------ftT~~~~~g~~~~~----------------~~ 119 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAE-YE---------------FTTLVTVPGVIRYK----------------GA 119 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGG-TC---------------SSCCCEEEEEEEET----------------TE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccC-CC---------------CceeeeeeEEEEeC----------------Cc
Confidence 347999999999999999999654322221 11 35666665666665 78
Q ss_pred EEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc-----CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~-----~~~p~ilviNKiD~~ 163 (832)
++.|+||||..+ ....+...++.||++++|+|+.+.+.. ...+...+.. .+.|.++++||+|+.
T Consensus 120 ~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 120 KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999999864 334577889999999999999875432 1222222222 356889999999985
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.87 E-value=2.4e-09 Score=117.81 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=44.0
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.+.||||||... .....+..+|++++|+|+..+...+... . .....|.++|+||+|+.
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGE 230 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGG
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCc
Confidence 467899999999654 2334458999999999998765443321 1 12345999999999986
No 190
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.86 E-value=8.5e-09 Score=122.26 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=52.9
Q ss_pred ceEEEEEeCCCCCCc-------------HHHHHHHh-hccCcEEEEEcCCCccchhHH-HHHHHHHcCCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDF-------------SSEVTAAL-RITDGALVVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df-------------~~~~~~~l-~~~D~ailVvda~~g~~~qt~-~~~~~~~~~~~p~ilviNKiD 161 (832)
...+.||||||...- ...+..++ ..+|.+++|+|+..+...+.. .+++.+...+.|+|+|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 457999999997651 12233344 478999999999998887776 677888888999999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 229 lv 230 (772)
T 3zvr_A 229 LM 230 (772)
T ss_dssp SS
T ss_pred cC
Confidence 87
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.76 E-value=3.5e-09 Score=107.94 Aligned_cols=135 Identities=14% Similarity=0.131 Sum_probs=70.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCcccc-----ccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-----EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~-----~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (832)
.++++|+++|+.|+|||||+++|+.......+ .+.+. ..|....+ ..|+++..-.....+......+.....
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chhHHHHH-hCCCcEEEecCCceeecccHHHHHHHH
Confidence 46789999999999999999999876422111 01110 01111001 113321110000000000000000000
Q ss_pred cCCCCceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
...+..+.+|||||..+-.... -...+.+++|+|+..+... .+......+.|.++++||+|+.
T Consensus 105 --~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 105 --KFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp --GGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred --hcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 2235789999999952211100 0246889999999987532 2333334568999999999986
No 192
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.71 E-value=9.6e-09 Score=117.14 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=72.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-eEe--ecCc---------ccccccCceeeeeeEEEEeeccch
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRM--TDTR---------ADEAERGITIKSTGISLYYEMTDD 84 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~~--~d~~---------~~E~~rgiTi~~~~~~~~~~~~~~ 84 (832)
.+.++|+++|+.|+||||++++|.+.... .|. +.. .|.. ......++++...... .....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~-----~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~---~dp~~ 170 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR-----KGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTE---MDPVI 170 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCC---SCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCC---CCHHH
Confidence 34679999999999999999999865321 121 111 1110 0112223433211000 00000
Q ss_pred hhccccCcCCCCceEEEEEeCCCCCC----cHHHHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCe-EEEE
Q 003305 85 ALKSYKGERNGNEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTV 157 (832)
Q Consensus 85 ~~~~~~~~~~~~~~~i~liDTPGh~d----f~~~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~-ilvi 157 (832)
.+.........+++.+.||||||+.. +..++....+ .+|.+++|+|+..|.. ....++.... .+|+ ++|+
T Consensus 171 i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVl 247 (504)
T 2j37_W 171 IASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIV 247 (504)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEE
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEE
Confidence 00000000011367899999999873 4444433333 7899999999998854 2222333222 2674 7899
Q ss_pred ECCCcc
Q 003305 158 NKMDRC 163 (832)
Q Consensus 158 NKiD~~ 163 (832)
||+|..
T Consensus 248 NK~D~~ 253 (504)
T 2j37_W 248 TKLDGH 253 (504)
T ss_dssp ECTTSC
T ss_pred eCCccc
Confidence 999976
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.67 E-value=1.5e-08 Score=106.14 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=29.3
Q ss_pred ccCcEEEEEcCCCc--cchhHHHHH-HHH----HcCCCCeEEEEECCCcc
Q 003305 121 ITDGALVVVDCIEG--VCVQTETVL-RQA----LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 121 ~~D~ailVvda~~g--~~~qt~~~~-~~~----~~~~~p~ilviNKiD~~ 163 (832)
.+|++|+|+|+++. ........| ..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 68999999999885 343332222 222 23578999999999986
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.62 E-value=1.5e-07 Score=105.04 Aligned_cols=114 Identities=20% Similarity=0.203 Sum_probs=69.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
...|+++|++|+|||||+++|...... +.++. ..|.......+.+. ...
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~----------i~~~~------ftTl~p~~G~V~~~---------------~~~ 205 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPK----------IAPYP------FTTLSPNLGVVEVS---------------EEE 205 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCE----------ECCCT------TCSSCCEEEEEECS---------------SSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCcc----------ccCcc------cceecceeeEEEec---------------Ccc
Confidence 356899999999999999999432111 11111 12222222223332 136
Q ss_pred EEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc-----CCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~-----~~~p~ilviNKiD~~ 163 (832)
.++++||||+.+ +.....+.+..+|.++.|+|++.....+....+++... ...|.++++||+|..
T Consensus 206 ~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 206 RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp EEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred eEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 789999999864 22344556678999999999972111111222222221 357999999999977
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.59 E-value=6.8e-08 Score=105.48 Aligned_cols=98 Identities=26% Similarity=0.190 Sum_probs=56.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccc-hhhccccCcCCCCce
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERNGNEY 98 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (832)
.+|+++|.+|+|||||+++|......+.. .++ .|+......+.+.... ..+............
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~-~p~---------------tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN-YPF---------------CTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CC---------------CCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC-CCC---------------ceECceEEEEecCCcccceeeeeecccceeee
Confidence 47999999999999999999764311111 011 1222222222222000 000000000001135
Q ss_pred EEEEEeCCCCCCcHH-------HHHHHhhccCcEEEEEcCCC
Q 003305 99 LINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 99 ~i~liDTPGh~df~~-------~~~~~l~~~D~ailVvda~~ 133 (832)
.++||||||+.++.. .....++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 799999999988642 35567899999999999987
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.57 E-value=8.7e-08 Score=104.98 Aligned_cols=61 Identities=21% Similarity=0.125 Sum_probs=38.2
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.+.|+||||..+-. ......+|.+++|+|+..|...+... . .....|.++++||+|+.
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCC
Confidence 36789999999965322 33467899999999998764332211 1 12356889999999986
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.52 E-value=5.1e-07 Score=99.10 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=56.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccc-hhhccccCcCC----
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERN---- 94 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~---- 94 (832)
.+|+++|++|+|||||+++|......+.. ..+ .|+........+.... ..+.......+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~-~p~---------------~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~ 65 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN-YPF---------------ATIDKNVGVVPLEDERLYALQRTFAKGERVPP 65 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS-CCG---------------GGGSTTEEEEECCCHHHHHHHHHHCBTTBCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC-CCC---------------ceeccceeeEecChHHHHHHHHHhcccccccc
Confidence 57999999999999999999875311111 001 1222111111111000 00000000000
Q ss_pred CCceEEEEEeCCCCCCc-------HHHHHHHhhccCcEEEEEcCCC
Q 003305 95 GNEYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 95 ~~~~~i~liDTPGh~df-------~~~~~~~l~~~D~ailVvda~~ 133 (832)
.....+.||||||..++ .......++.+|++++|+|+.+
T Consensus 66 ~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 66 VVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 12467999999999875 2456678899999999999986
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.51 E-value=1.5e-07 Score=98.58 Aligned_cols=66 Identities=21% Similarity=0.107 Sum_probs=45.7
Q ss_pred ceEEEEEeCCCCCCcHH------HHHHHhhccCcEEEEEcCCCccchhHHH-H----HHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVCVQTET-V----LRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~------~~~~~l~~~D~ailVvda~~g~~~qt~~-~----~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.+.||||||..++.. .+..++.. +.+|+|+|+.......... . +......++|.++|+||+|+.
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 184 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccc
Confidence 46899999999987642 23345555 8889999998765544322 1 122334578999999999976
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.50 E-value=8.1e-07 Score=99.13 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=62.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+|+|+.|+|||||+++|+........ .|... .+. .-|+....+.+.+. ..+....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~--~~~~~-~~~-------~~t~~~~~i~~v~q------------~~~~~~~ 89 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPE--YPGPS-HRI-------KKTVQVEQSKVLIK------------EGGVQLL 89 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCC--CCSCC-------------CCEEEEEECC------------------CEE
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCC--CCCcc-cCC-------ccceeeeeEEEEEe------------cCCcccc
Confidence 46899999999999999999543211110 11000 000 01121111222221 0111347
Q ss_pred EEEEeCCCCCCcHH------HH--------HHH-----------hhc--cCcEEEEEcCC-CccchhHHHHHHHHHcCCC
Q 003305 100 INLIDSPGHVDFSS------EV--------TAA-----------LRI--TDGALVVVDCI-EGVCVQTETVLRQALGERI 151 (832)
Q Consensus 100 i~liDTPGh~df~~------~~--------~~~-----------l~~--~D~ailVvda~-~g~~~qt~~~~~~~~~~~~ 151 (832)
++++||||..++.. .+ ..+ ++. +++++++++.+ .|..+....+++.+. .++
T Consensus 90 Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v 168 (418)
T 2qag_C 90 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKV 168 (418)
T ss_dssp EEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-TTS
T ss_pred eeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-ccC
Confidence 89999999977532 11 111 122 33466666665 688877766666654 488
Q ss_pred CeEEEEECCCcc
Q 003305 152 RPVLTVNKMDRC 163 (832)
Q Consensus 152 p~ilviNKiD~~ 163 (832)
|+|+|+||+|+.
T Consensus 169 ~iIlVinK~Dll 180 (418)
T 2qag_C 169 NIIPLIAKADTL 180 (418)
T ss_dssp EEEEEEESTTSS
T ss_pred cEEEEEEcccCc
Confidence 999999999976
No 200
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.44 E-value=1.9e-06 Score=90.77 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=70.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeec--CcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTD--TRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d--~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
.|++++|+.|+|||||++.|....... .|...... .......++ +.+.++. ..-.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~----~G~i~~~g~~i~~~~~~~~-------i~~v~q~------------~~~~ 59 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSR----KASSWNREEKIPKTVEIKA-------IGHVIEE------------GGVK 59 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------CCCCCSCCE-------EEESCC----------------C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC----CCccccCCcccCcceeeee-------eEEEeec------------CCCc
Confidence 589999999999999999997653221 23211111 001111111 1221210 0012
Q ss_pred eEEEEEeCCCCCCcH---------HH-----HHH--------------HhhccCcEEEEEcCC-CccchhHHHHHHHHHc
Q 003305 98 YLINLIDSPGHVDFS---------SE-----VTA--------------ALRITDGALVVVDCI-EGVCVQTETVLRQALG 148 (832)
Q Consensus 98 ~~i~liDTPGh~df~---------~~-----~~~--------------~l~~~D~ailVvda~-~g~~~qt~~~~~~~~~ 148 (832)
..++++|+||..+.. .+ ... ++..++++++++|.. +|..+....+++.+..
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~ 139 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK 139 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh
Confidence 368999999975411 00 111 111257789999955 8999999888888776
Q ss_pred CCCCeEEEEECCCcc
Q 003305 149 ERIRPVLTVNKMDRC 163 (832)
Q Consensus 149 ~~~p~ilviNKiD~~ 163 (832)
. +++|+++||+|..
T Consensus 140 ~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 V-VNIIPVIAKADTM 153 (270)
T ss_dssp T-SEEEEEETTGGGS
T ss_pred c-CcEEEEEeccccC
Confidence 6 8999999999966
No 201
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.44 E-value=4.2e-08 Score=108.32 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=69.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCce
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (832)
-++|+++|.+|+|||||+|+|+........ ...+. ...|.|...... .+ +.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~----~~~~~------~~~gtT~~~~~~--~~-----------------~~ 212 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGN----VITTS------YFPGTTLDMIEI--PL-----------------ES 212 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTC----CCEEE------ECTTSSCEEEEE--EC-----------------ST
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCcc----ceeec------CCCCeEEeeEEE--Ee-----------------CC
Confidence 468999999999999999999876211000 00111 112445443322 22 22
Q ss_pred EEEEEeCCCCCCcH-------HHHHHHh---hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFS-------SEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~-------~~~~~~l---~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++++||||..+.. .+....+ ...|.+++++|+...........+.+....+.|+++++||+|..
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccc
Confidence 47899999976432 2233334 67899999999853211111111233345678899999999986
No 202
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.40 E-value=1.1e-06 Score=97.56 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=68.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (832)
..+.|++|+|+.|+|||||++.|+... + .|. ...... .+.+.. .+.+.+.. .+-
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~--l----~g~-~~~~~~-----~~~~~~--~i~~v~Q~------------~~l 93 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTK--F----EGE-PATHTQ-----PGVQLQ--SNTYDLQE------------SNV 93 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSC--C------------CC-----SSCEEE--EEEEEEEC--------------C
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCcc--c----cCC-cCCCCC-----ccceEe--eEEEEeec------------Ccc
Confidence 345679999999999999999996542 1 111 000001 112221 12222220 001
Q ss_pred ceEEEEEeCCCCCCcH-------------H-HHHHHhh-------------cc--C-cEEEEEcCCCccchhHHHHHHHH
Q 003305 97 EYLINLIDSPGHVDFS-------------S-EVTAALR-------------IT--D-GALVVVDCIEGVCVQTETVLRQA 146 (832)
Q Consensus 97 ~~~i~liDTPGh~df~-------------~-~~~~~l~-------------~~--D-~ailVvda~~g~~~qt~~~~~~~ 146 (832)
...++++|+||..+.. . .....+. .+ | ++++|+|+.+|.......+++.+
T Consensus 94 ~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L 173 (427)
T 2qag_B 94 RLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKL 173 (427)
T ss_dssp EEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHT
T ss_pred ccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 2378999999986531 1 1111111 11 2 46678899999998888887766
Q ss_pred HcCCCCeEEEEECCCcc
Q 003305 147 LGERIRPVLTVNKMDRC 163 (832)
Q Consensus 147 ~~~~~p~ilviNKiD~~ 163 (832)
. .++|+|+|+||+|.+
T Consensus 174 ~-~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAI 189 (427)
T ss_dssp C-SCSEEEEEESCGGGS
T ss_pred h-hCCCEEEEEcchhcc
Confidence 4 788999999999965
No 203
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.37 E-value=1.1e-07 Score=104.73 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=67.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCcc-ccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i-~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (832)
-++|+++|.+|+|||||+|+|+...... .. ........|.|...... .+ +
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~----------~~~~~~~~gtT~~~~~~--~~-----------------~ 210 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETEN----------VITTSHFPGTTLDLIDI--PL-----------------D 210 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSS----------CCEEECCC----CEEEE--ES-----------------S
T ss_pred cceEEEecCCCCChhHHHHHHHhhhcccccc----------ceecCCCCCeecceEEE--Ee-----------------c
Confidence 3689999999999999999998764211 00 00011122445433222 22 1
Q ss_pred eEEEEEeCCCCCCcH-------HHHHHH---hhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 98 YLINLIDSPGHVDFS-------SEVTAA---LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 98 ~~i~liDTPGh~df~-------~~~~~~---l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+.++||||..+.. .+.... ....+.+++++|+...........+.+....+.|+++++||+|..
T Consensus 211 ~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 211 EESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp SSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccc
Confidence 238899999986432 222222 356788999999853221111111233345578999999999987
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.27 E-value=4.9e-06 Score=89.09 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=61.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
.+|+++|+.|+|||||+++|....-... .| ... +..+ ... |+......+... ..+....
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~-~g~~--~~~--t~~~~~~~~~~q------------~~~~~~~ 77 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPE---RV-ISG-AAEK--IER--TVQIEASTVEIE------------ERGVKLR 77 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC---------------------------------CEEEEC---------------CCEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCC---CC-ccc-CCcc--cCC--cceEeeEEEEec------------CCCcccC
Confidence 5889999999999999999854311111 11 000 0000 000 111111122221 0112468
Q ss_pred EEEEeCCCC-------CCcHHHHH-------HHhhcc-------------CcEEEEEcCCC-ccchhHHHHHHHHHcCCC
Q 003305 100 INLIDSPGH-------VDFSSEVT-------AALRIT-------------DGALVVVDCIE-GVCVQTETVLRQALGERI 151 (832)
Q Consensus 100 i~liDTPGh-------~df~~~~~-------~~l~~~-------------D~ailVvda~~-g~~~qt~~~~~~~~~~~~ 151 (832)
++++||||. ..|...+. ..++.+ ++++++++.+. |+.+....+++.+ ..++
T Consensus 78 ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l-~~~~ 156 (301)
T 2qnr_A 78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKV 156 (301)
T ss_dssp EEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH-TTTS
T ss_pred cchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH-HhcC
Confidence 999999998 33332222 333333 23566666544 5777766666554 3467
Q ss_pred CeEEEEECCCcc
Q 003305 152 RPVLTVNKMDRC 163 (832)
Q Consensus 152 p~ilviNKiD~~ 163 (832)
++++++||.|+.
T Consensus 157 ~iilV~~K~Dl~ 168 (301)
T 2qnr_A 157 NIVPVIAKADTL 168 (301)
T ss_dssp CEEEEECCGGGS
T ss_pred CEEEEEEeCCCC
Confidence 899999999976
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.27 E-value=8.6e-07 Score=97.72 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=53.4
Q ss_pred hhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccc-hhhcccc
Q 003305 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYK 90 (832)
Q Consensus 12 ~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~ 90 (832)
++.......+|+++|.+|+|||||+++|....-.+.. ..+.|+......+.+.... ..+....
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~----------------~p~tTi~p~~g~v~v~~~r~~~l~~~~ 78 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAEN----------------FPFCTIDPNESRVPVPDERFDFLCQYH 78 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccC----------------CCccccCceeEEEEECCccceeecccc
Confidence 3444444568999999999999999999643211100 0122333333333222100 0000000
Q ss_pred CcCCCCceEEEEEeCCCCCCcHH-------HHHHHhhccCcEEEEEcCCC
Q 003305 91 GERNGNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~-------~~~~~l~~~D~ailVvda~~ 133 (832)
.....-...+.+|||||+..+.. .....++.+|++++|+|+.+
T Consensus 79 ~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 79 KPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred CcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 00001134699999999987654 56788999999999999975
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.16 E-value=1.2e-06 Score=95.37 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=38.2
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.+.||||||..+-.. .....+|.+++|+|+..+...+. +.... ...+.++++||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhcc
Confidence 367899999999865322 23478999999999875432110 00000 124678888999965
No 207
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.14 E-value=3.9e-06 Score=94.17 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=42.6
Q ss_pred CceEEEEEeCCCCCCcHHHHHHH----h--hccCcEEEEEcCCCccchhHHHHHHHHHcCCC-C-eEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAA----L--RITDGALVVVDCIEGVCVQTETVLRQALGERI-R-PVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~----l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~-p-~ilviNKiD~~ 163 (832)
.++.+.||||||........... . ..+|.+++|+|+..|.. .....+.. ...+ | ..+++||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~~-~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKAF-KEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHHH-HTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHHH-hhcccCCeEEEEeCCCCc
Confidence 46788999999987643332222 2 25799999999988742 22222222 3346 6 67899999965
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.06 E-value=7.8e-06 Score=90.29 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=61.6
Q ss_pred hhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccc-hhhcccc
Q 003305 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYK 90 (832)
Q Consensus 12 ~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~ 90 (832)
++.....-.+|+++|++|+|||||+++|...........++ +|+......+.+.... ..+....
T Consensus 13 ~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~---------------tTi~p~~G~v~v~~~r~~~l~~~~ 77 (392)
T 1ni3_A 13 QWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY---------------ATIDPEEAKVAVPDERFDWLCEAY 77 (392)
T ss_dssp CCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS---------------CCCCTTEEEEEECCHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCc---------------eeecceeeeeeeCCcchhhhhhhc
Confidence 34444455689999999999999999997643211111111 2333222222222000 0000000
Q ss_pred CcCCCCceEEEEEeCCCCCC-------cHHHHHHHhhccCcEEEEEcCCC
Q 003305 91 GERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~d-------f~~~~~~~l~~~D~ailVvda~~ 133 (832)
.....-...+.++||||... +.......++.+|+++.|+|+.+
T Consensus 78 ~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 78 KPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00000124689999999654 44567788899999999999975
No 209
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.02 E-value=9.8e-06 Score=90.91 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=71.0
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-eEeecCcc-----------cccccCceeeeeeEEEEeeccchh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRA-----------DEAERGITIKSTGISLYYEMTDDA 85 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~~~d~~~-----------~E~~rgiTi~~~~~~~~~~~~~~~ 85 (832)
..+.|+++|+.|+||||++..|.+....- .|. +...|..+ .....|+.+-..... .. ....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~----~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~--~d-p~~i 171 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK----HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVG--QK-PVDI 171 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT----SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSS--SC-HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCC--CC-HHHH
Confidence 46799999999999999999997653221 021 11111111 011223322111000 00 0000
Q ss_pred hccccCcCCCCceEEEEEeCCCCCCcHHHHHHH------hhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCe-EEEEE
Q 003305 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAA------LRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVN 158 (832)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~~~~~~------l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~-ilviN 158 (832)
+.........+++.+.||||||...+...+..+ +..+|.+++|+|+..|.. .....+.. ..++++ -+++|
T Consensus 172 ~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f-~~~l~i~gvVln 248 (433)
T 2xxa_A 172 VNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAF-NEALPLTGVVLT 248 (433)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHH-HHHSCCCCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHH-hccCCCeEEEEe
Confidence 000000111136789999999987764444433 346789999999987732 12222211 223553 37999
Q ss_pred CCCcc
Q 003305 159 KMDRC 163 (832)
Q Consensus 159 KiD~~ 163 (832)
|+|..
T Consensus 249 K~D~~ 253 (433)
T 2xxa_A 249 KVDGD 253 (433)
T ss_dssp CTTSS
T ss_pred cCCCC
Confidence 99965
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.98 E-value=1.2e-05 Score=89.66 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=43.0
Q ss_pred CceEEEEEeCCCCCC------cHHHHHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVD------FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~d------f~~~~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++.+.||||||... +..++....+ ..|.++||+|+..|... ....+.....-.+..+++||+|..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc
Confidence 467889999999755 4555544333 35999999999987432 222232222224567899999965
No 211
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.96 E-value=5.9e-06 Score=84.12 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=24.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.+.++|+++|+.|+|||||+++|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998764
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.94 E-value=2.3e-05 Score=87.59 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=40.6
Q ss_pred ceEEEEEeCCCCCCc----HHHHH--HHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDF----SSEVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df----~~~~~--~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++.+.||||||.... ..++. .....+|.++||+||..|... ....+.....--+..+++||+|..
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCSSC
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCCCc
Confidence 478999999996543 23322 233357999999999986432 222222222223345899999965
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.91 E-value=1.4e-05 Score=92.52 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=64.8
Q ss_pred HHHHHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchh
Q 003305 6 AEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (832)
Q Consensus 6 ~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (832)
.+-+..+.....+...|+|+|.+|+|||||+|+|+.....+.. .|.+ ++.|.. .+.|...
T Consensus 25 ~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~--~~tt-----------~~~T~g----i~~~~~~--- 84 (592)
T 1f5n_A 25 PEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSL--GSTV-----------QSHTKG----IWMWCVP--- 84 (592)
T ss_dssp HHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCC--CCSS-----------SCCCCS----EEEEEEE---
T ss_pred HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCcccc--CCCC-----------CCceeE----EEEeecc---
Confidence 3333333333456788999999999999999999654322211 1100 111111 1122100
Q ss_pred hccccCcCCCCceEEEEEeCCCCCCcHH------HHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc
Q 003305 86 LKSYKGERNGNEYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG 148 (832)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~------~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~ 148 (832)
.....+..+.||||||..+... ....++...-..++|+|+..++..+...++..+..
T Consensus 85 ------~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 85 ------HPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp ------CSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHT
T ss_pred ------cccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHH
Confidence 0012356899999999875432 12222333223478888888888777666655443
No 214
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.86 E-value=2.4e-05 Score=83.36 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=71.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccc-----------ccccCceeeeeeEEEEeeccchhhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRAD-----------EAERGITIKSTGISLYYEMTDDALK 87 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~-----------E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (832)
.+.|+++|+.|+||||++..|......- .+++.+.|.... ....|+.+-..... ......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~----g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~---~~p~~~~~ 170 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK----GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGE---KDVVGIAK 170 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT----TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTC---CCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCC---CCHHHHHH
Confidence 4678999999999999999996543110 122222222210 01123322111000 00000000
Q ss_pred cccCcCCCCceEEEEEeCCCCCC--cHHHHH------HHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEE
Q 003305 88 SYKGERNGNEYLINLIDSPGHVD--FSSEVT------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVN 158 (832)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~d--f~~~~~------~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviN 158 (832)
........+++.+.||||||... ....+. ..+..+|.+++|+|+..|. +.....+.... .++ ..+++|
T Consensus 171 ~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~i~gvVln 247 (297)
T 1j8m_F 171 RGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAYDLASKFNQ-ASKIGTIIIT 247 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-TCTTEEEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH--HHHHHHHHHHh-hCCCCEEEEe
Confidence 00001111367899999999877 432222 3456789999999998652 22223333222 467 557999
Q ss_pred CCCcc
Q 003305 159 KMDRC 163 (832)
Q Consensus 159 KiD~~ 163 (832)
|+|..
T Consensus 248 k~D~~ 252 (297)
T 1j8m_F 248 KMDGT 252 (297)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 99965
No 215
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.79 E-value=2.3e-05 Score=85.51 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=53.1
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-----------chhHHHHHHHHHc----CCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-----------~~qt~~~~~~~~~----~~~p~ilviNKiD 161 (832)
+..+.+|||+|+..|...+...++.++++|+|+|.++-- .......+..+.. .++|+|||+||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 688999999999999999999999999999999998731 1122334444433 4689999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 272 L~ 273 (353)
T 1cip_A 272 LF 273 (353)
T ss_dssp HH
T ss_pred ch
Confidence 85
No 216
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.63 E-value=4.7e-05 Score=83.38 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=46.0
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCc----------cch-hHHHHHHHHHc----CCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG----------VCV-QTETVLRQALG----ERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g----------~~~-qt~~~~~~~~~----~~~p~ilviNKiD 161 (832)
+..+.+|||+|+..|...+..+++.++++|+|+|.++- -.. .....|..+.. .++|+|||+||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 68899999999999999999999999999999999972 111 22334444433 4689999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 280 L~ 281 (362)
T 1zcb_A 280 LL 281 (362)
T ss_dssp HH
T ss_pred hh
Confidence 85
No 217
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.56 E-value=0.00017 Score=71.94 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=50.9
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCC-----CCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-----IRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~-----~p~ilviNKiD~~ 163 (832)
.+.+.|||||+.. ...+..++..+|.+|+++.....- ..+...++.+...+ .++.+++|++|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 4789999999977 456778899999999999988766 66777777766543 5667899999954
No 218
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.51 E-value=6.5e-05 Score=81.18 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=52.2
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCC----------cc-chhHHHHHHHHHc----CCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------GV-CVQTETVLRQALG----ERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~----------g~-~~qt~~~~~~~~~----~~~p~ilviNKiD 161 (832)
+..+.+|||+|+..|...+...++.++++|+|+|.++ -- .......|..+.. .++|++||.||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 6889999999999999999999999999999999972 11 1122333443332 4689999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 240 L~ 241 (340)
T 4fid_A 240 LF 241 (340)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 219
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.45 E-value=0.00042 Score=81.31 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=39.0
Q ss_pred eEEEEEeCCCCCCc---------HHH---HHHH-hhcc-CcEEEEEcCCCccchhH-HHHHHHHHcCCCCeEEEEECCCc
Q 003305 98 YLINLIDSPGHVDF---------SSE---VTAA-LRIT-DGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDR 162 (832)
Q Consensus 98 ~~i~liDTPGh~df---------~~~---~~~~-l~~~-D~ailVvda~~g~~~qt-~~~~~~~~~~~~p~ilviNKiD~ 162 (832)
-.+.|+|.||...- ... +... +..- ..+++++++......+. ..+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 35899999985431 112 2222 2322 45566666655444332 34555556678899999999998
Q ss_pred c
Q 003305 163 C 163 (832)
Q Consensus 163 ~ 163 (832)
.
T Consensus 227 v 227 (608)
T 3szr_A 227 V 227 (608)
T ss_dssp S
T ss_pred c
Confidence 7
No 220
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.43 E-value=0.00012 Score=80.87 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=52.5
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCC----------ccchh-HHHHHHHHHc----CCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------GVCVQ-TETVLRQALG----ERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~----------g~~~q-t~~~~~~~~~----~~~p~ilviNKiD 161 (832)
+..+.||||+|+..|...+...++.++++|+|+|.++ --..+ ....+..+.. .++|++||.||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 5889999999999999999999999999999999987 22222 2233344332 3678999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 296 L~ 297 (402)
T 1azs_C 296 LL 297 (402)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 221
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.42 E-value=0.00012 Score=78.74 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=51.5
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCC-------Cccch----hHHHHHHHHHc----CCCCeEEEEECCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI-------EGVCV----QTETVLRQALG----ERIRPVLTVNKMD 161 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~-------~g~~~----qt~~~~~~~~~----~~~p~ilviNKiD 161 (832)
+..+.+|||.|+..|...+...++.++++|+|+|.+ +.-.. .....|+.+.. .++|++||+||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 689999999999999999999999999999999765 21111 12334444432 4689999999999
Q ss_pred cc
Q 003305 162 RC 163 (832)
Q Consensus 162 ~~ 163 (832)
+.
T Consensus 246 L~ 247 (327)
T 3ohm_A 246 LL 247 (327)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.39 E-value=0.0003 Score=78.18 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=66.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccCceeeeeeEEEEeeccchhhccccCcCCCCceE
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (832)
..++++|+.|+|||||++.|.+... . ..|... .+..+..+ ++ +.++. .....
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~---p-~~GsI~-~~g~~~t~-~~---------~v~q~-------------~~~~~ 121 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGN---E-EEGAAK-TGVVEVTM-ER---------HPYKH-------------PNIPN 121 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT---T-STTSCC-CCC----C-CC---------EEEEC-------------SSCTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC---c-cCceEE-ECCeecce-eE---------Eeccc-------------cccCC
Confidence 4899999999999999999966211 1 022111 11100000 11 11210 01226
Q ss_pred EEEEeCCCCCC---cHHHHHHH--hhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCccc
Q 003305 100 INLIDSPGHVD---FSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (832)
Q Consensus 100 i~liDTPGh~d---f~~~~~~~--l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~~ 164 (832)
++++|+||... -..+.... +...|..++ +|+.. .+.|...+.+.+...+.|+++++||.|..+
T Consensus 122 ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 122 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDI 189 (413)
T ss_dssp EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred eeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccc
Confidence 88999999642 12233332 233344443 77654 466666777777778899999999999863
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.36 E-value=0.00015 Score=76.56 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.3
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
...+|+++|.+|+|||||+|+|+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34589999999999999999997543
No 224
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.29 E-value=0.00034 Score=75.28 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=38.6
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHh------------hccCcEEEEEcCCCccchhHHHHHHHHHc--CCCCeE-EEEECC
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAAL------------RITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPV-LTVNKM 160 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l------------~~~D~ailVvda~~g~~~qt~~~~~~~~~--~~~p~i-lviNKi 160 (832)
+++.+.||||||...........+ ..+|.+++|+|+..+ + . .+.++.. ...++. +++||+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-~-~---~l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-Q-N---GVIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-H-H---HHHHHHHHTTTSCCCEEEEECG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-H-H---HHHHHHHHhhcCCCcEEEEeCC
Confidence 367899999999766432222222 137889999999854 1 1 2222322 234443 789999
Q ss_pred Ccc
Q 003305 161 DRC 163 (832)
Q Consensus 161 D~~ 163 (832)
|..
T Consensus 265 d~~ 267 (320)
T 1zu4_A 265 DST 267 (320)
T ss_dssp GGC
T ss_pred CCC
Confidence 964
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.22 E-value=0.00014 Score=75.99 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+++++|.+|+|||||+++|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 58999999999999999999754
No 226
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.21 E-value=0.00053 Score=68.71 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=59.8
Q ss_pred CCCeEEEEEEeeecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEE
Q 003305 373 NGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 452 (832)
Q Consensus 373 ~~p~va~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~ 452 (832)
++||...|-.++. ..|. +..+||.+|++++||.|.++..+ . ..+|.+|+. ...++++|.|||.+
T Consensus 4 ~~p~rl~v~~v~~--g~G~-v~~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~~I~~----~~~~~~~A~aGd~V 67 (204)
T 3e1y_E 4 GSPIRLPIVDKYK--DMGT-VVLGKLESGSICKGQQLVMMPNK----H-----NVEVLGILS----DDVETDTVAPGENL 67 (204)
T ss_dssp ---CBEEEEEEEE--SSSE-EEEEECCBSCEESSCCEEETTTT----E-----EEEEEEECS----SSSCBSEECTTSEE
T ss_pred CCCEEEEEEEEEc--CCCE-EEEEEEecCEEECCCEEEECCCC----C-----EEEEEEEEE----CCEEeEEECCCCEE
Confidence 5678877777764 4566 89999999999999999986321 1 268888874 33689999999999
Q ss_pred EE--eccccccccce-eeecCC
Q 003305 453 AM--VGLDQFITKNA-TLTNEK 471 (832)
Q Consensus 453 ~i--~gl~~~~~~tg-Tl~~~~ 471 (832)
++ .|++..-...| +|+++.
T Consensus 68 ~l~L~gi~~~di~rG~vl~~~~ 89 (204)
T 3e1y_E 68 KIRLKGIEEEEILPGFILCDPN 89 (204)
T ss_dssp EEEEEESSSSCCCTTCEEBCSS
T ss_pred EEEEcCCCHHHCccceEEECCC
Confidence 99 67764333456 888754
No 227
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.19 E-value=0.00058 Score=73.66 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=38.3
Q ss_pred ceEEEEEeCCCCCC----cHHHHHHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVD----FSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~d----f~~~~~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++.+.++||+|... +..++.... -..|-.++|+|+..|. +....++.....--..++++||+|-.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 34567899999743 333433211 2468899999988763 22222232222223447889999954
No 228
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.08 E-value=0.00083 Score=67.54 Aligned_cols=65 Identities=11% Similarity=-0.046 Sum_probs=49.6
Q ss_pred ceEEEEEeCCCC-CCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc-CCCCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-ERIRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh-~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~-~~~p~ilviNKiD~~ 163 (832)
.+.+.+||||+. ... .+..++..+|.+|+++.+...-...+...++.+.. .+.+..+++|+.|..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 578999999997 543 45678899999999999876555555566666655 367777899999965
No 229
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.06 E-value=0.00099 Score=75.07 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=20.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-..|+|+|..|+|||||+..|.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 357899999999999999999654
No 230
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.06 E-value=0.00034 Score=76.29 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=50.1
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCC----------Cccch-hHHHHHHHHHc----CCCCeEEEEECC
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI----------EGVCV-QTETVLRQALG----ERIRPVLTVNKM 160 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~----------~g~~~-qt~~~~~~~~~----~~~p~ilviNKi 160 (832)
+...+.+|||+|+..|...+...++.+|++|+|+|.+ .--.. .....|+.+.. .++|++||.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4678999999999999999999999999999999987 11111 12233444332 468999999999
Q ss_pred Ccc
Q 003305 161 DRC 163 (832)
Q Consensus 161 D~~ 163 (832)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 975
No 231
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.97 E-value=0.0032 Score=70.39 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=30.1
Q ss_pred cCHHHHHhhhcc----cCCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 4 FTAEGLRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 4 ~~~~~~~~~~~~----~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
++.+-+.+++.. ..++.-|+|+|..++|||||+|+|+..
T Consensus 48 v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 48 LDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp ECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 455556555543 346778999999999999999999876
No 232
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.96 E-value=0.00088 Score=74.62 Aligned_cols=65 Identities=23% Similarity=0.341 Sum_probs=39.0
Q ss_pred CceEEEEEeCCCCCCc----HHHHHH--HhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDF----SSEVTA--ALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df----~~~~~~--~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~ 163 (832)
.++.+.||||||.... ..++.. .+..+|.+++|+|+..|. ......+... ..++ .-+++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~-~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFD-EKVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHH-HHTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHH-hcCCceEEEEeCcCCc
Confidence 3577899999997643 233222 223589999999998652 1112222211 1344 45789999964
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.92 E-value=0.00071 Score=71.92 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=37.7
Q ss_pred CceEEEEEeCCCCCCcHHH----HHHHhh--ccCcEEEEEcCCCccchhHHHHHHHHHcCC-CC-eEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSE----VTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~----~~~~l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~-~p-~ilviNKiD~~ 163 (832)
.++.+.|+||||....... +...+. ..|.+++|+|++.+.. .+.+.+.... ++ .-+++||+|..
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 3578999999998654332 223332 2577899999987532 1222222221 22 33677999965
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.87 E-value=0.0011 Score=70.65 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...|+++|+.|+||||++..|...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 467899999999999999999654
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.86 E-value=0.0018 Score=69.04 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=21.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...|+++|+.|||||||+..|...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999654
No 236
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.58 E-value=0.0024 Score=67.80 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=37.7
Q ss_pred ceEEEEEeCCCCCCc----HHHHHHHh--hccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDF----SSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df----~~~~~~~l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~~ 163 (832)
++.+.||||||.... ..++.... ..+|.+++|+|+..+ .......+.... .++ .-+++||+|..
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 578999999987543 22222222 257899999998754 122222222211 244 33789999965
No 237
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.55 E-value=0.0009 Score=71.37 Aligned_cols=63 Identities=16% Similarity=0.073 Sum_probs=49.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCcc-chhH-HHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~-~~qt-~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.+||| ++.|......+++.+|++|+|+|+++.. .... ...+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 6899999 8888887888999999999999999754 3332 233344555789999999999986
No 238
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=96.44 E-value=0.0066 Score=59.19 Aligned_cols=110 Identities=21% Similarity=0.229 Sum_probs=93.4
Q ss_pred CCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeee
Q 003305 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (832)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 758 (832)
+.-+.||.+.|+-+- .-...+++-++.|=..|.++||.+++.+-..|...+.++++-..+|+|...|.+.. .|++.
T Consensus 80 ~~~l~nv~vVVtRyf---GGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~ 155 (191)
T 2cve_A 80 AQGLDRVAVLVVRYF---GGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEE 155 (191)
T ss_dssp HTTBCSEEEEEEEEC---CSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEE
T ss_pred HcCCCcEEEEEEEEe---CCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceecc
Confidence 567888888887542 23445556667788899999999999999999999999999999999999999988 88887
Q ss_pred cccCCCCc-EEEEEEeechhhcCccHHhhhhCCCceee
Q 003305 759 MQRPGTPL-YNIKAYLPVIESFGFSGTLRAATSGQAFP 795 (832)
Q Consensus 759 ~~~~~~~~-~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (832)
+..+ . ..++..+|..+.-.|...|..+|+|++.+
T Consensus 156 ~y~~---~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 156 TYTP---EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEET---TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEcC---CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 7654 3 78899999999999999999999999754
No 239
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.42 E-value=0.0059 Score=64.98 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=45.0
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc----CCCCeE-EEEECCCc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~----~~~p~i-lviNKiD~ 162 (832)
+.+.+.|||||+..... .+..++..+|.+|+|+++...-......+++.+.. .+++++ +|+|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46889999999865532 23457789999999998765333444455555543 345555 89999984
No 240
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=96.32 E-value=0.0046 Score=61.56 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=95.1
Q ss_pred CCCceeeEEEEeeeeccccccccCCCchHHHHHHHHHHHHHhcCCeeeeeeEEEEEEecCcccccHHHHHhhccceeeee
Q 003305 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (832)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 758 (832)
+.-+.||.|.|+-+- .-...+++-++.|-..|.++||.+|+.+-..|...+.|.++-..+|+|...|.+..+.|++.
T Consensus 92 ~~~l~nv~vVVtRyf---GGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~ 168 (217)
T 1vi7_A 92 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINS 168 (217)
T ss_dssp HHTCCSEEEECCEEC---CSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCCEEEEEEEEe---CCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEce
Confidence 456788888776542 23455666667888999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeee
Q 003305 759 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (832)
Q Consensus 759 ~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (832)
+..+ ...++..+|..+.-.|...|..+|+|++.+.
T Consensus 169 ~y~~---~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 169 DYQA---FVLLRVALPAAKVAEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp EESS---SEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7653 5788999999999999999999999998543
No 241
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.32 E-value=0.0028 Score=66.80 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=43.6
Q ss_pred EEeCCCCC-CcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 102 LIDSPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 102 liDTPGh~-df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+=+-|||. ....++...+..+|+++.|+||.++.......+-+.. .++|.++++||+|+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKA 63 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGS
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccC
Confidence 34679997 5778899999999999999999987766543333322 578999999999987
No 242
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.92 E-value=0.026 Score=59.54 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=46.2
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc------CCCCeE-EEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIRPV-LTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~------~~~p~i-lviNKiD~~ 163 (832)
..+.+.|||||+.... .+..++..+|.+|+|+.+...-.......++.+.. .+++++ +++|+.|..
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 3578999999997654 34567778999999999876544444444444332 356655 799999964
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.89 E-value=0.017 Score=61.31 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=65.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEee--cCccc---c------cccCceeeeeeEE-EEeeccchhh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--DTRAD---E------AERGITIKSTGIS-LYYEMTDDAL 86 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~--d~~~~---E------~~rgiTi~~~~~~-~~~~~~~~~~ 86 (832)
-..++++|+.|+|||||+..|.+... . ..|+..+. |.... | ..+++.+-..... +... ....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~---~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~--~~v~ 173 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK---N-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA--TVLS 173 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH---H-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH--HHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH---H-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH--HHHH
Confidence 35789999999999999999966421 1 12332221 21110 1 1224433211110 0000 0000
Q ss_pred ccccCcCCCCceEEEEEeCCCCCCcHHH----HH---HHhh-----ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE
Q 003305 87 KSYKGERNGNEYLINLIDSPGHVDFSSE----VT---AALR-----ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV 154 (832)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~~----~~---~~l~-----~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i 154 (832)
..+.... ..+....++||.|...+... .. .++. ..+-.+||+|++.|..+... +.+.....++ .+
T Consensus 174 e~l~~~~-~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~-t~ 250 (302)
T 3b9q_A 174 KAVKRGK-EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TG 250 (302)
T ss_dssp HHHHHHH-HTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CE
T ss_pred HHHHHHH-HcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCC-CE
Confidence 0000000 01233578999998654322 11 1111 23556999998888766543 2122223343 46
Q ss_pred EEEECCCcc
Q 003305 155 LTVNKMDRC 163 (832)
Q Consensus 155 lviNKiD~~ 163 (832)
++++|+|-.
T Consensus 251 iiiThlD~~ 259 (302)
T 3b9q_A 251 LILTKLDGS 259 (302)
T ss_dssp EEEECCSSC
T ss_pred EEEeCCCCC
Confidence 789999954
No 244
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.86 E-value=0.023 Score=57.84 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=48.7
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCC---CeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI---RPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~---p~ilviNKiD~~ 163 (832)
.+.+.|||||+..+. .+..++..+|.+|+|+.....-...+...++.+...+. ..-+++|+.|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 578999999997643 56678999999999998875444555666666666653 255899999965
No 245
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.72 E-value=0.036 Score=60.19 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-..|+++|+.|+|||||+..|...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 357899999999999999999664
No 246
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.62 E-value=0.01 Score=65.10 Aligned_cols=62 Identities=16% Similarity=-0.012 Sum_probs=40.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 99 ~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+.-+|+| +.+|........+.+|++++|+|+.+........+.+. -.+.|+++|+||+|+.
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~--l~~~piilV~NK~DLl 111 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRF--AADNPILLVGNKADLL 111 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHH--CTTSCEEEEEECGGGS
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHH--hCCCCEEEEEEChhcC
Confidence 34445655 77888888888899999999999998554332223222 2378999999999987
No 247
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.20 E-value=0.0048 Score=64.30 Aligned_cols=54 Identities=22% Similarity=0.360 Sum_probs=38.8
Q ss_pred CCCCCc-HHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 106 PGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 106 PGh~df-~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
|||... ..++...+..+|.++.|+||.++.......+ .. . ++|+++++||+|+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~l-l--~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DF-S--RKETIILLNKVDIA 59 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CC-T--TSEEEEEEECGGGS
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hh-c--CCCcEEEEECccCC
Confidence 899754 4688899999999999999998765543221 11 1 89999999999987
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.20 E-value=0.0097 Score=63.30 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=41.2
Q ss_pred CCCcHHHHHHHhhccCcEEEEEcCCCcc-chhH-HHHHHHHHcCCCCeEEEEECCCcc
Q 003305 108 HVDFSSEVTAALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 108 h~df~~~~~~~l~~~D~ailVvda~~g~-~~qt-~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
++.|..-...+++.+|++++|+|+++.. .... ...+..+...++|+++|+||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 4455544456789999999999999753 4442 233445666889999999999986
No 249
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.80 E-value=0.061 Score=55.63 Aligned_cols=67 Identities=21% Similarity=0.045 Sum_probs=50.8
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~ 162 (832)
+.+.+.|||||+..........++..+|.+|+|+.....-.......++.+...+++.+ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46889999999976543333334457999999999887655666777777777788887 89999984
No 250
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.70 E-value=0.013 Score=62.35 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++++|++|+|||||+++|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4789999999999999999943
No 251
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=94.61 E-value=0.04 Score=54.78 Aligned_cols=65 Identities=5% Similarity=-0.044 Sum_probs=36.4
Q ss_pred EEEEEeCC------CCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHH----HHHH----cCCCCeEEEEECC-Ccc
Q 003305 99 LINLIDSP------GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQAL----GERIRPVLTVNKM-DRC 163 (832)
Q Consensus 99 ~i~liDTP------Gh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~----~~~~----~~~~p~ilviNKi-D~~ 163 (832)
++..--+| |+..+...+..++..+|++|+|||+++.-....+.-+ .... ..+.|++|+.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 45556677 6777888899999999999999999975322233332 1111 1467999999995 666
No 252
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.50 E-value=0.19 Score=55.92 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=29.5
Q ss_pred cCHHHHHhhhcc----cCCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 4 FTAEGLRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 4 ~~~~~~~~~~~~----~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
++.+-+..+... ..++.-|+|+|..++|||+|+|.|+..
T Consensus 48 ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 48 LDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp ECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHH
T ss_pred ECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHH
Confidence 455566655443 356788999999999999999988754
No 253
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.49 E-value=0.026 Score=61.71 Aligned_cols=54 Identities=15% Similarity=0.015 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 108 HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 108 h~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.++|...+....+.+|++++|+|+++........+ +.. ..++|+++|+||+|+.
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l-~~~-~~~~p~ilV~NK~DL~ 109 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGL-HRF-VGNNKVLLVGNKADLI 109 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTH-HHH-SSSSCEEEEEECGGGS
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHH-HHH-hCCCcEEEEEEChhcC
Confidence 46788878888888999999999987321111111 221 2378999999999986
No 254
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.89 E-value=0.061 Score=57.06 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLV 40 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (832)
..++++|+.|+|||||+++|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 255
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.68 E-value=0.29 Score=50.42 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=39.8
Q ss_pred CceEEEEEeCCCCCCcHHH-HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc----CCCCe-EEEEECCCc
Q 003305 96 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRP-VLTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~-~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~----~~~p~-ilviNKiD~ 162 (832)
+.+.+.||||||......- .......+|.+|+|+.+...-......+++.+.. .+.+. -+++|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 3578999999996432111 1112357999999998765333333333333332 24554 478999874
No 256
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.42 E-value=0.051 Score=57.60 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++++|++|+|||||+++|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 3689999999999999999944
No 257
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.01 E-value=0.052 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.+++++|+.|+|||||++.|....+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999976653
No 258
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.86 E-value=0.12 Score=54.90 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=36.6
Q ss_pred HHhhccCcEEEEEcCCCccchhH--HHHHHHHHcCCCCeEEEEECCCcc
Q 003305 117 AALRITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 117 ~~l~~~D~ailVvda~~g~~~qt--~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
..+..+|.+++|+|+.++..... ...+..++..++|+++++||+|+.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 130 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccC
Confidence 36889999999999997544333 344455667899999999999987
No 259
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.84 E-value=0.12 Score=52.07 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=50.0
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
..+.+.|||||+... ..+..++..+|.+|+|+++...-...+...++.+...+.+.+ +++||.|..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 357899999998655 567788999999999998875444455566666666666654 799999965
No 260
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.79 E-value=0.25 Score=50.68 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=44.9
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHH------cCCCCeE-EEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL------GERIRPV-LTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~------~~~~p~i-lviNKiD~~ 163 (832)
..+.+.|||||+.... .+..++..+|.+|+|+.+...-.......++.+. ..+.+++ +++|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 5688999999997653 3567788999999999987543333333333322 1356665 799999854
No 261
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.72 E-value=0.054 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.++|+|+.|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999764
No 262
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=92.53 E-value=0.085 Score=43.47 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=53.8
Q ss_pred EEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceee
Q 003305 731 MVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFP 795 (832)
Q Consensus 731 ~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (832)
...++++-..+|+|...|.+..+.|.+.+..+ .+.++..+|..+.-.|...|+.+|+|++.+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~---~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIINSDVQA---FVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEEEEEEE---EEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEcccccC---eEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 46788899999999999999999999988754 689999999999999999999999999854
No 263
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.51 E-value=0.066 Score=51.92 Aligned_cols=24 Identities=8% Similarity=0.380 Sum_probs=21.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+-++|+|++|||||||++.|....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999997653
No 264
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.36 E-value=0.13 Score=52.81 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=48.8
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
.+.+.|||||+... ..+..++..+|.+|+|+.+...-...+...++.+...+.+.+ +++|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 57899999998765 567788999999999998775444455555666655566655 799999954
No 265
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.35 E-value=0.075 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHH
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
.-..|+++|++|||||||++.|..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999944
No 266
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.35 E-value=0.19 Score=52.48 Aligned_cols=58 Identities=7% Similarity=0.012 Sum_probs=40.9
Q ss_pred CCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHH-------HHHHH-cCCCCeEEEEEC-CCcc
Q 003305 106 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-------LRQAL-GERIRPVLTVNK-MDRC 163 (832)
Q Consensus 106 PGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~-------~~~~~-~~~~p~ilviNK-iD~~ 163 (832)
-|+..+...+..+...+|++|+|||+++.-....+.- +.... ..+.|++|+.|| .|.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 3677888899999999999999999987543222221 21222 268899999997 5876
No 267
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.26 E-value=0.094 Score=50.28 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=22.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
....|+++|++||||||+.+.|....|
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 356899999999999999999965433
No 268
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.13 E-value=0.069 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+-++++|+.|||||||++.|+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999997653
No 269
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.12 E-value=0.19 Score=52.31 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=50.7
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
.+.+.|||||+..... .....+..+|++|+|+.+...-.......++.+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 5789999999976542 33445578999999999887666667777777777788877 799999965
No 270
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.03 E-value=0.19 Score=52.68 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=51.6
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
.+.+.|||||+..... ......+.+|++|+|+.+...-.......++.+...+.+++ +|+||+|..
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 4678999999976543 34556678999999999887666667777777778888766 799999965
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.68 E-value=0.097 Score=49.76 Aligned_cols=24 Identities=17% Similarity=-0.068 Sum_probs=21.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+.|+|.|.+||||||+++.|....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999996553
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.66 E-value=0.13 Score=50.95 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..-..|+|+|++|||||||++.|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999543
No 273
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=91.66 E-value=0.55 Score=41.61 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=37.4
Q ss_pred CcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 390 GRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 390 g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
|+ +..+||.+|+|++|+.| |+ +. ...+|.+|.. +.+.+++|.+||-|++.
T Consensus 48 gp-vivGrVe~G~LK~G~~V----Pg----~~---~vg~VkSIE~----~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 48 KD-VIIGTVESGMIGVGFKV----KG----PS---GIGGIVRIER----NREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EE-EEEEEEEEEEEETTCEE----EC----SS---CEEEEEEEEE----TTEEESEEETTCEEEEE
T ss_pred CC-eeEEEEeEEEEcCCCCc----CC----Cc---eEEEEEEEEE----CCcCcCCcCCCCEEEEE
Confidence 45 77889999999999999 22 10 0146666664 55789999999999885
No 274
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.61 E-value=0.09 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
-..++|+|+.|||||||++.|....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3478999999999999999996543
No 275
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.59 E-value=0.091 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
..++++|+.|||||||++.|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999997653
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.47 E-value=0.11 Score=51.13 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=22.6
Q ss_pred HhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 10 ~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
..+|... .-..|+++|++|||||||++.|....|
T Consensus 21 ~~~m~~~-~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 21 QSMMTGE-PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred HhhhcCC-CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3444432 346899999999999999999966543
No 277
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.24 E-value=0.12 Score=58.40 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=21.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..+|.++|.+|+||||+..+|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999654
No 278
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.21 E-value=0.13 Score=52.14 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=47.7
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCC-eEEEEECCCc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p-~ilviNKiD~ 162 (832)
..+.+.|||||+.... .+..++..+|.+|+|+++...-......+.+.....+++ +.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4678999999986654 566788999999999988654334445555556666665 4579999983
No 279
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.11 E-value=0.12 Score=49.61 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.++.++|+|+.|+|||||+++|+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999764
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.07 E-value=0.12 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+|+++|++|||||||.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999554
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.05 E-value=0.14 Score=50.81 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.4
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
....|+|+|+.|||||||++.|...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999654
No 282
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.99 E-value=0.11 Score=52.10 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
-..++|+|+.|+|||||++.|....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999997643
No 283
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.98 E-value=0.73 Score=49.10 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 123 DGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 123 D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
+++++|.-...-....++..++.+.+.++|+. +|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 48889988776666677888888999999987 799998754
No 284
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.93 E-value=0.12 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
-..++++|+.|+|||||++.|....
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3478999999999999999996654
No 285
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.88 E-value=0.13 Score=50.78 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=22.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.-+-|+|+|+.|+|||||+++|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34678999999999999999998764
No 286
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.76 E-value=0.39 Score=50.64 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=51.3
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
.+.+.|||||+..... ........+|++|+|+.+...........++.+...+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 4679999999976543 33445578999999999887767777777777777788766 789999965
No 287
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.69 E-value=0.13 Score=51.66 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=21.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
-.-++|+|+.|||||||++.|+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999999999999999997754
No 288
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.60 E-value=0.26 Score=50.39 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=47.4
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCC---------CCeEEEEECCCcc
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER---------IRPVLTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~---------~p~ilviNKiD~~ 163 (832)
.+.+.|||||+... ..+..++..+|.+|+|+++...-......+++.+...+ .+.-+++|+.|..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 57899999998654 47778899999999999987544444455555554433 3456899999853
No 289
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.57 E-value=0.16 Score=49.17 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
++-++|+|+.|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 567899999999999999999764
No 290
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.54 E-value=0.12 Score=49.58 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.2
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
.-++++|+.|||||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999986
No 291
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.45 E-value=0.16 Score=48.11 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
..|++.|.+||||||+++.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 47899999999999999999 5433
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.42 E-value=0.14 Score=50.10 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
|=|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998753
No 293
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.37 E-value=0.14 Score=50.40 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=20.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
.+|+|+|.+||||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999955
No 294
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.29 E-value=0.16 Score=53.18 Aligned_cols=35 Identities=26% Similarity=0.136 Sum_probs=29.5
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~ 133 (832)
.+.+.|||||+.. ...+..++..+|.+|+|+....
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 5789999999975 4667889999999999998763
No 295
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.25 E-value=0.17 Score=49.83 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.+.|+|+|.+||||||+++.|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999966543
No 296
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.23 E-value=0.089 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..++|+|+.|||||||++.|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999654
No 297
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.13 E-value=0.17 Score=50.17 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=21.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
-+-|+++|++|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3578999999999999999997654
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.06 E-value=0.18 Score=49.53 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+.++|+++|.+||||||+...|....+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999965543
No 299
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.02 E-value=0.42 Score=49.23 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=47.8
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcC--CCCeEEEEECCCcc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~~p~ilviNKiD~~ 163 (832)
..+.+.|||||+... ..+..++..+|.+|+|+.+...-......+++.+... +.++.+++|+.++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 357899999999664 4567788899999999988654334444555555555 35677899999654
No 300
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.95 E-value=0.17 Score=49.70 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..|+++|++|||||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999654
No 301
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.82 E-value=0.2 Score=50.29 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=22.3
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+...|++.|.+||||||++..|....+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999965543
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.80 E-value=0.18 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=20.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.|+|.|.+||||||+++.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999654
No 303
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.68 E-value=0.15 Score=51.86 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=18.7
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|||||||++.|
T Consensus 32 e~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 304
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.63 E-value=0.16 Score=51.16 Aligned_cols=20 Identities=40% Similarity=0.391 Sum_probs=18.5
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|||||||++.|
T Consensus 31 e~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.60 E-value=0.18 Score=49.01 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++++|++|||||||++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999954
No 306
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.43 E-value=0.19 Score=49.61 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=19.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999943
No 307
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.40 E-value=0.21 Score=50.86 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=22.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcCc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~ 45 (832)
...|+|+|+.|||||||++.|...-|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999999999754443
No 308
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.39 E-value=3.2 Score=43.93 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...++|.+.|++|+|||+|+.++...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45578999999999999999999544
No 309
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.29 E-value=0.19 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
-+.|+++|++|||||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999997654
No 310
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.23 E-value=0.17 Score=50.51 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=20.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-.++++|+.|+|||||++.|...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999654
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.23 E-value=0.22 Score=48.03 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.++|+++|.+||||||+...|....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999996553
No 312
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.22 E-value=0.17 Score=51.66 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++++|+.|||||||++.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6789999999999999999943
No 313
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.20 E-value=0.26 Score=47.90 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.+.|++.|.+||||||+...|....+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999965433
No 314
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.20 E-value=0.28 Score=47.99 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.3
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+...|+|.|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998654
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.99 E-value=0.14 Score=51.73 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=15.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLV 40 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (832)
..++++|+.|||||||++.|.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999996
No 316
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.95 E-value=0.29 Score=48.02 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.8
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.+.+.|+|.|.+||||||++..|....|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999976544
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.82 E-value=0.28 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..-..++|+|+.|+|||||++.|+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 44468999999999999999999765
No 318
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.78 E-value=0.22 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
+.|++.|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999965
No 319
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.73 E-value=0.35 Score=49.24 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=23.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.+..+|++.|.+||||||++..|....+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999976544
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.67 E-value=0.23 Score=50.65 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.4
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
....|+|+|+.|||||||++.|....|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345799999999999999999966544
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.65 E-value=0.24 Score=47.43 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
++|+|+|.+||||||+...|....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 479999999999999999995543
No 322
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.61 E-value=0.24 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.-..++|+|+.|||||||++.|+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3457999999999999999999764
No 323
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.59 E-value=0.22 Score=48.81 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHh
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.++++|+.|+|||||+..|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999764
No 324
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.59 E-value=0.21 Score=48.10 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-++++++|++|+|||||+.++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999554
No 325
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.58 E-value=0.71 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.1
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..+-|.++|.+||||||+..+|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999443
No 326
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.44 E-value=0.26 Score=49.25 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
..|+|+|++||||||+++.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965443
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.44 E-value=0.27 Score=48.47 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.....|+|+|.+|||||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999999999543
No 328
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.36 E-value=0.21 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|||||||++.|
T Consensus 33 e~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 329
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.36 E-value=0.21 Score=51.52 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
-.++|+|+.|||||||++.|
T Consensus 34 e~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 330
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.32 E-value=0.21 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++|+|+.|+|||||++.|..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999944
No 331
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.32 E-value=0.21 Score=51.77 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|||||||++.|
T Consensus 38 e~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36899999999999999999
No 332
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.30 E-value=0.22 Score=50.77 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|||||||++.|
T Consensus 32 e~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 333
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.28 E-value=1.7 Score=43.02 Aligned_cols=67 Identities=10% Similarity=-0.023 Sum_probs=41.9
Q ss_pred ceEEEEEeCCCCCCc--HH--HHHHHhh-ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 97 EYLINLIDSPGHVDF--SS--EVTAALR-ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 97 ~~~i~liDTPGh~df--~~--~~~~~l~-~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
.+.+.||||||...- .. .....+. ..+.+|+|+++..+-..++...++.+...+.+++ +++|++|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 578999999986531 11 1111222 2245888888765444455555566666778866 789999954
No 334
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.27 E-value=0.22 Score=50.45 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|+|||||++.|
T Consensus 35 e~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 335
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.25 E-value=0.21 Score=52.04 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLV 40 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (832)
-.++|+|+.|||||||++.|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999993
No 336
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.18 E-value=0.22 Score=49.82 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.5
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|+|||||++.|
T Consensus 36 e~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 337
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.09 E-value=0.24 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..++++|++|+|||||++.|+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999654
No 338
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.08 E-value=0.31 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.167 Sum_probs=21.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHH
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..-..|+|+|+.|||||||++.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4456899999999999999999954
No 339
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.07 E-value=0.28 Score=47.87 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhc
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.|+|.|.+||||||++..|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999996543
No 340
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.06 E-value=0.28 Score=47.54 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.7
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+..+|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999654
No 341
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.03 E-value=0.23 Score=50.66 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|+|||||++.|
T Consensus 33 e~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 342
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.02 E-value=0.24 Score=50.57 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLV 40 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (832)
..++|+|+.|||||||++.|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999994
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.98 E-value=0.18 Score=49.18 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+.|++.|.+||||||+...|....+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999966543
No 344
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.86 E-value=0.32 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+.|.+.|.+||||||+.+.|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999996653
No 345
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.80 E-value=0.26 Score=50.55 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|||||||++.|
T Consensus 36 e~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.80 E-value=0.33 Score=48.14 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+|+|.|.+||||||+++.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999966544
No 347
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.70 E-value=0.24 Score=51.25 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|||||||++.|
T Consensus 51 ei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHH
Confidence 46899999999999999999
No 348
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.61 E-value=0.31 Score=47.84 Aligned_cols=25 Identities=28% Similarity=0.126 Sum_probs=21.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.-..|+|+|.+|||||||...|...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998554
No 349
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.59 E-value=0.25 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++|+|+.|||||||++.|..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999933
No 350
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.58 E-value=0.33 Score=48.17 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+|+|.|.+||||||+++.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999966544
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.58 E-value=0.35 Score=49.48 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=22.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+...|+|.|.+||||||+.+.|....+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999866544
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.57 E-value=0.38 Score=46.29 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=21.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
-..|+++|.+||||||+...|....+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999965433
No 353
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.57 E-value=0.33 Score=46.63 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.1
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
..++|++.|.+|+||||++..|....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999996543
No 354
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.57 E-value=0.27 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++|+|+.|||||||++.|..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999943
No 355
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.54 E-value=0.47 Score=46.69 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHH
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
.....|+|+|..|||||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
No 356
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.53 E-value=0.39 Score=46.47 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.+.|.+.|.+||||||+...|....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999996543
No 357
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.49 E-value=0.3 Score=48.69 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHhhhc-ccCCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 7 EGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 7 ~~~~~~~~-~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.+..++. -...-..++|+|+.|+|||||+..|...
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34445542 2233357899999999999999999653
No 358
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=87.43 E-value=1.7 Score=44.50 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=44.5
Q ss_pred CceEEEEEeCCCCC-----Cc-HHHHHHHhhccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCC
Q 003305 96 NEYLINLIDSPGHV-----DF-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 161 (832)
Q Consensus 96 ~~~~i~liDTPGh~-----df-~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD 161 (832)
..+.+.+||+||-. +. .....-+-....-+|||+|+..|...++...++.+...++++. +++||+.
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 35678999999843 11 1112223334567899999988766666666666667788877 6899984
No 359
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.42 E-value=0.32 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.102 Sum_probs=21.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+.|++.|.+||||||+++.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999543
No 360
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.42 E-value=0.26 Score=50.82 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
-.++|+|+.|||||||++.|
T Consensus 42 ei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 361
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.38 E-value=0.27 Score=49.72 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLV 40 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (832)
..++++|+.|||||||+..|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 478999999999999999986
No 362
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.34 E-value=0.26 Score=50.53 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|+|||||++.|
T Consensus 27 e~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36899999999999999999
No 363
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.32 E-value=0.49 Score=49.67 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=21.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+...|+|+|++|||||||++.|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999988543
No 364
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.31 E-value=0.38 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-.|+|+|+.|||||||+++|+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999664
No 365
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.27 E-value=0.3 Score=47.12 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.|+|.|.+||||||+++.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999654
No 366
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.13 E-value=1.4 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.++.+.|++|+|||||+.++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 48999999999999999999654
No 367
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.11 E-value=0.28 Score=55.94 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-.+++|+|+.|||||||+++|+..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999543
No 368
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.06 E-value=0.35 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
++.-++|+|..|||||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678899999999999999999865
No 369
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.06 E-value=0.28 Score=50.87 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++|+|+.|||||||++.|
T Consensus 34 e~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 370
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.01 E-value=0.38 Score=46.48 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=21.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.+.|++.|.+||||||+...|....+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999965543
No 371
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.95 E-value=0.3 Score=45.75 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.7
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.-..++++|++|+|||||+.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999654
No 372
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.95 E-value=0.29 Score=50.96 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLV 40 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (832)
..++|+|+.|+|||||++.|.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999993
No 373
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.88 E-value=0.36 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=21.3
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...-|+|+|++|||||||++.|...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999998544
No 374
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.78 E-value=0.31 Score=50.91 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.5
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
-.++|+|+.|+|||||++.|
T Consensus 48 e~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36899999999999999999
No 375
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.74 E-value=1.9 Score=39.67 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=21.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHH
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
....+|.+.|.+|+|||+++.++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999844
No 376
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.73 E-value=0.29 Score=50.31 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=18.5
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
..++++|+.|||||||++.|
T Consensus 32 e~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.65 E-value=0.4 Score=47.77 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=22.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+..+|+++|.+||||||+...|....+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999966543
No 378
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.59 E-value=0.4 Score=45.45 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=21.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.+.||++.|.+||||||+...|-...|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999855433
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.53 E-value=0.38 Score=46.23 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
..+|+|+.|+|||||+++|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999977543
No 380
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.52 E-value=0.62 Score=44.38 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.8
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..+++.+.|++|+|||||+.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999654
No 381
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.33 E-value=0.32 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-.+++|+|+.|||||||++.|+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999654
No 382
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.32 E-value=0.52 Score=45.43 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.+.|++.|.+||||||+...|....+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999965433
No 383
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.29 E-value=3.6 Score=43.20 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..++|.+.|++|+|||||+.++...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999554
No 384
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.26 E-value=0.42 Score=49.03 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+.|+|+|++|||||||...|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999966543
No 385
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.22 E-value=0.46 Score=50.32 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=21.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.....|+|+|+.|||||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999554
No 386
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.20 E-value=1.4 Score=47.46 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...+++.|.|++|+|||||+.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999654
No 387
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.17 E-value=0.36 Score=46.35 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=17.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...|++.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999554
No 388
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=86.13 E-value=1 Score=52.27 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=33.2
Q ss_pred ccCcEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 121 ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 121 ~~D~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
.+|.+++|+.+.......+...++.+...++++. +|+|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 4688999988776666667777788888888765 789998854
No 389
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.07 E-value=0.43 Score=47.61 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=22.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+..+|+|+|.+||||||+...|....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999966544
No 390
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=85.94 E-value=0.48 Score=48.51 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
...|+|+|+.|||||||++.|...-|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999964434
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.82 E-value=0.39 Score=46.97 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.|++.|.+||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999543
No 392
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.81 E-value=0.3 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+++|+|+.|||||||++.|+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999543
No 393
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=85.78 E-value=1.2 Score=45.17 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=55.4
Q ss_pred eeeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeee
Q 003305 726 LEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (832)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (832)
----|++.|++|.++.+++++.|.+ -|.|..++-.++ +.+...+.+|-.---.+...|++.|+|+|...
T Consensus 181 ~ra~m~l~v~ip~~~~~~~~~~l~~-~~~v~~ee~~~d-gs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 181 KFEKVRVAIKIPGEMAGSAYGVISN-FGKITNEEWQND-GSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp EECEEEEEEEECGGGHHHHHHHHHH-HCEEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred eEeeEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 3346889999999999999999954 588887775442 35677889998877788999999999999764
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.76 E-value=0.42 Score=45.33 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+.|++.|.+||||||+...|-...|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999965433
No 395
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=85.73 E-value=0.48 Score=45.74 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.6
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+-..|+++|.+||||||++..|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999554
No 396
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.72 E-value=0.37 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++++|+.|||||||++.|..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 3589999999999999999944
No 397
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=85.69 E-value=0.48 Score=46.49 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=21.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+.|+|.|.+||||||+++.|....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999996543
No 398
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.65 E-value=0.41 Score=46.23 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHH
Q 003305 21 NMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~ 41 (832)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999954
No 399
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.59 E-value=0.36 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++|+|+.|||||||++.|..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 3589999999999999999943
No 400
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=85.54 E-value=0.7 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.+.|.|++|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45689999999999999999765
No 401
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.50 E-value=0.4 Score=49.61 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSL 39 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (832)
-.++|+|+.|+|||||++.|
T Consensus 31 e~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 402
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.50 E-value=0.39 Score=50.41 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLV 40 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (832)
..++|+|+.|+|||||++.|.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999993
No 403
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=85.44 E-value=0.48 Score=46.70 Aligned_cols=24 Identities=29% Similarity=0.155 Sum_probs=20.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+.|+|.|.+||||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999553
No 404
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.41 E-value=0.55 Score=45.96 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.4
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
....|++.|.+||||||++..|....+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999965443
No 405
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.22 E-value=0.46 Score=45.74 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
++|+++|.+||||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999965433
No 406
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.14 E-value=5 Score=38.83 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..+++.+.|++|+|||+|+.++...
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999654
No 407
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.06 E-value=0.63 Score=46.61 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.3
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcCc
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~ 45 (832)
.+.+.|.|+|++||||+|.+..|...-+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 45678899999999999999999776554
No 408
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.90 E-value=0.53 Score=44.41 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhc
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+|++.|.+||||||+.+.|-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999996543
No 409
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.87 E-value=0.46 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-..|+|+|+.|||||||++.|+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999764
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.83 E-value=0.57 Score=46.45 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+|++.|.+||||||+++.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999966543
No 411
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.74 E-value=0.28 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHh
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-|+|.|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 412
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.73 E-value=0.42 Score=51.68 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++++|+.|||||||++.|..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3689999999999999999943
No 413
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.61 E-value=0.48 Score=44.32 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHh
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-.+|+|+.|+|||||+++|.+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999764
No 414
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=84.60 E-value=0.42 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...++|+|+.|+|||||++.|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999654
No 415
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.58 E-value=0.43 Score=51.71 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++++|+.|||||||++.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 3689999999999999999943
No 416
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.56 E-value=0.57 Score=48.88 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.9
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHH
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLV 40 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll 40 (832)
+.+.|+|.|.+||||||+++.|-
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999995
No 417
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.46 E-value=2.8 Score=47.67 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.+.+.+.|++|+|||||+.++....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999997654
No 418
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.45 E-value=0.52 Score=45.17 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-..|++.|..||||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998543
No 419
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.43 E-value=0.56 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..|+|.|..||||||+++.|-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999843
No 420
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.35 E-value=0.53 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+..|++.|.+||||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999654
No 421
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=84.32 E-value=0.58 Score=47.91 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=22.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.....|.++|.+||||||+...|....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345689999999999999999996654
No 422
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.22 E-value=0.45 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++++|+.|||||||++.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 3689999999999999999943
No 423
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.20 E-value=1.3 Score=44.45 Aligned_cols=41 Identities=5% Similarity=-0.079 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCccchhHHHHHHHHHcCCCCeEEEEECCCcc
Q 003305 123 DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 123 D~ailVvda~~g~~~qt~~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
+.-+++||-..-+.......++.+...++++|++.-..|-.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 45688899776554444445555555689999988888854
No 424
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.16 E-value=0.6 Score=46.32 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcCc
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAGI 45 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~ 45 (832)
+|.++|++||||+|.+..|...-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6889999999999999999776554
No 425
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.15 E-value=0.63 Score=45.61 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.....|++.|.+||||||+.+.|-..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999998654
No 426
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=84.01 E-value=0.47 Score=51.71 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++++|+.|||||||++.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 3689999999999999999943
No 427
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.99 E-value=0.66 Score=46.74 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=23.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
....+|+++|.+||||||+...|....+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999965543
No 428
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.97 E-value=0.86 Score=44.50 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+++.+.|++|+|||||+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999998654
No 429
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.94 E-value=0.5 Score=45.80 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHH
Q 003305 21 NMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-|++.|..||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999944
No 430
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=83.93 E-value=0.47 Score=51.73 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++++|+.|||||||++.|..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 3589999999999999999943
No 431
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=83.85 E-value=0.34 Score=51.32 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++|+|+.|||||||++.|..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4689999999999999999843
No 432
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=83.84 E-value=0.48 Score=51.60 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++++|+.|||||||++.|..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 3689999999999999999943
No 433
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.83 E-value=0.66 Score=48.58 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=22.3
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
....|.++|++||||||++..|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997653
No 434
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=83.83 E-value=0.56 Score=48.07 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
-.+|+++|.+|+||||+.+.|....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999996543
No 435
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.82 E-value=0.7 Score=45.76 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=24.7
Q ss_pred HHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
++.+.....+.+++.+.|++|+||||++.+|...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 3444443323357999999999999999999665
No 436
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=83.82 E-value=2.3 Score=36.57 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=46.7
Q ss_pred ecCCCCcceeeeeeeeeeeeCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCEEEEe
Q 003305 385 PASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (832)
Q Consensus 385 ~~~~~g~~l~~~RV~sG~L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI~~i~ 455 (832)
..+..|. +|=++|.+|+++++..+++++.+ ...++-++.+|. +...+|.++.+|.=|+|.
T Consensus 16 ~isk~g~-IAGc~V~~G~i~r~~~vRv~Rd~------~vI~eG~i~SLk----r~KddV~EV~~G~ECGi~ 75 (99)
T 1d1n_A 16 KVSKVGT-IAGCYVTDGKITRDSKVRLIRQG------IVVYEGEIDSLK----RYKDDVREVAQGYECGLT 75 (99)
T ss_dssp CCSSSCC-CEEEEECSSBCCSSSEEEEECSS------SEEEEEECSEEE----CSSSCCSCCBTTCEEEEE
T ss_pred EcCCceE-EEEEEEEcCEEEcCCeEEEEECC------EEEEEeEEhhhc----ccccccceECCCcEEEEE
Confidence 3355676 99999999999999999997522 234445777776 467789999999999985
No 437
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.69 E-value=0.85 Score=45.43 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.1
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..+++.+.|++|+|||||+.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999654
No 438
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.59 E-value=0.64 Score=48.33 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.++++|++|+|||||++++...
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999554
No 439
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.56 E-value=0.75 Score=43.70 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...+++.+.|++|+|||||+.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999654
No 440
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.44 E-value=0.59 Score=51.73 Aligned_cols=25 Identities=20% Similarity=0.038 Sum_probs=21.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
--.|+|+|+.|||||||+++|+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3478999999999999999997653
No 441
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=83.25 E-value=1.4 Score=44.30 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=54.6
Q ss_pred eeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeee
Q 003305 728 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (832)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (832)
--|++.|.+|.++.|++++.|. .-|.|..++-.++ +.+...+.+|-.---.+.+.|++.|+|.|.+..
T Consensus 168 a~m~~~v~vp~~~~~~~~~~l~-~~~~v~~ee~~~d-gs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 168 EEMEIAIKIPPEHTGRAISALY-NFGGVTREEWQRD-GSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp CEEEEEEEECGGGHHHHHHHHH-HHCCEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEEEEcHHHHHHHHHHHH-hhCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 3578899999999999999994 4578888775442 356778899988767788999999999997654
No 442
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.14 E-value=2.4 Score=44.29 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.9
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
....++.+.|++|+|||+|+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988554
No 443
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.10 E-value=0.69 Score=47.11 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.+.++|++|+|||||++++...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999654
No 444
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.08 E-value=0.7 Score=45.97 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
..+|+++|.+||||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999965543
No 445
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.06 E-value=0.86 Score=45.25 Aligned_cols=36 Identities=8% Similarity=0.097 Sum_probs=25.8
Q ss_pred HHHHhhhc-ccCCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 7 EGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 7 ~~~~~~~~-~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.+.+++. ....-..++|+|++|+|||||+..|...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34555553 2223357899999999999999999643
No 446
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.86 E-value=1 Score=44.60 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=20.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+.+.|.|+.|+|||||+.++...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999654
No 447
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.60 E-value=0.56 Score=47.20 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=20.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHH
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
+-..|+|.|..|||||||++.|..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346799999999999999998833
No 448
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.50 E-value=0.61 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++++|+.|||||||++.|..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 3689999999999999999943
No 449
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=82.18 E-value=0.41 Score=51.61 Aligned_cols=22 Identities=9% Similarity=0.288 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
-.++++|+.|||||||++.|..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 3689999999999999999943
No 450
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=82.07 E-value=1.7 Score=46.86 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.-+.+.|.|++|+|||||+.++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999764
No 451
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=81.96 E-value=0.71 Score=51.81 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-..++|+|+.|||||||++.|...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 357899999999999999999664
No 452
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.81 E-value=0.82 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+|++.|.+||||||+++.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999965433
No 453
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.27 E-value=3.5 Score=54.03 Aligned_cols=35 Identities=29% Similarity=0.200 Sum_probs=26.5
Q ss_pred HHhhhc--ccCCeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 9 LRRIMD--FKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 9 ~~~~~~--~~~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+..++. -..+-++|.+.|++|+|||+|+-++...+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444444 23456799999999999999999996653
No 454
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=81.15 E-value=1.2 Score=48.47 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..-+.++++|++|+|||||+..|...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44568999999999999999999653
No 455
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.10 E-value=0.91 Score=47.02 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.++++|++|+|||||+.++...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 46999999999999999999654
No 456
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=81.04 E-value=1 Score=44.45 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=21.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..-..|+++|..|+||||+...|...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 33468999999999999999998543
No 457
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=80.78 E-value=0.79 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHh
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-.+|+|+.|||||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999765
No 458
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=80.76 E-value=0.96 Score=45.77 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
..|+|.|++|+||||+.+.|....|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999965433
No 459
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=80.66 E-value=6.8 Score=41.13 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=17.8
Q ss_pred eeeEEEE-eCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVI-AHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~ii-G~~~~GKTTL~~~Ll~~ 42 (832)
..++.++ |++|+||||++.++...
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3455454 55999999999999554
No 460
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=80.64 E-value=0.41 Score=51.74 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++++|+.|||||||++.|..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4689999999999999999943
No 461
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.32 E-value=1.3 Score=45.86 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...+++.+.|++|+|||||+.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34578999999999999999999554
No 462
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.29 E-value=1.4 Score=43.40 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=25.8
Q ss_pred HHHHhhhc-ccCCeeeEEEEeCCCCCHHHHHHHHHH
Q 003305 7 EGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 7 ~~~~~~~~-~~~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
+.+.+++. ....-..++++|++|+|||||+..|..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555553 333344789999999999999999965
No 463
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=80.26 E-value=1.1 Score=45.15 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=23.2
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.+...|+|+|.+|+||||+.+.|....|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999865444
No 464
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=79.92 E-value=1 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
-.++|+|+.|+|||||++.|....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999997764
No 465
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.77 E-value=0.99 Score=48.25 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
..+++++|++|+|||||++.+....
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4679999999999999999996654
No 466
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=79.73 E-value=0.89 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHh
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..++|+|+.|+|||||++.|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 57899999999999999999654
No 467
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=79.72 E-value=3.1 Score=45.07 Aligned_cols=35 Identities=23% Similarity=0.141 Sum_probs=26.8
Q ss_pred ceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCC
Q 003305 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (832)
Q Consensus 97 ~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~ 133 (832)
.+.+.|||||.. ....+...+..||.+++|+.+..
T Consensus 259 ~yD~VIID~p~~--~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 259 NYDEIIVDLPFS--LEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp CCSEEEEECCCC--CCHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCEEEEeCCCC--CCHHHHHHHHHCCEEEEEecCCc
Confidence 578899999843 34567778889999999887654
No 468
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.67 E-value=1 Score=45.82 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=21.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+.|.+.|++|+|||||+.++...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999554
No 469
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=79.56 E-value=1.1 Score=43.77 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
.|+|.|.+||||||+.+.|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999965443
No 470
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.18 E-value=1.4 Score=45.94 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=24.2
Q ss_pred HHhhhcccCCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.++......-.-++|+|++|+|||||+..|...
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3444333333346899999999999999998553
No 471
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=79.06 E-value=3.3 Score=47.91 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=31.0
Q ss_pred cEEEEEcCCCccchhHHHHHHHHHcCCCCeE-EEEECCCcc
Q 003305 124 GALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (832)
Q Consensus 124 ~ailVvda~~g~~~qt~~~~~~~~~~~~p~i-lviNKiD~~ 163 (832)
.+++|+.+.......+...++.+...+++.. +|+|+++..
T Consensus 200 ~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 6888888776666677777788888888765 789999854
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.83 E-value=1.4 Score=46.40 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.1
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
..+-|+|+|+.++|||||...|....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34578999999999999999997654
No 473
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=78.76 E-value=1.2 Score=44.72 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=22.2
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
.-..|++.|..||||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999996553
No 474
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.75 E-value=1.6 Score=46.98 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
...+++.|.|+.|+|||||+..+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999654
No 475
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.29 E-value=1.6 Score=45.87 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=22.6
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
...+.|.+.|++|+|||+|+.++....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 345689999999999999999996543
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.11 E-value=5.1 Score=42.43 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.7
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..+.|.+.|++|+|||+|+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3478999999999999999999554
No 477
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.11 E-value=1.1 Score=44.80 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=26.2
Q ss_pred HHHHhhhc-ccCCeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 7 EGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 7 ~~~~~~~~-~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.+..++. -...-..++|+|++|+|||||+..|...
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34555653 2233357899999999999999999653
No 478
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=78.03 E-value=2.3 Score=45.91 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=30.0
Q ss_pred HhhccCcEEEEEcCCCccchhHH---HHHHHHHcCCCCeEEEEECCCcc
Q 003305 118 ALRITDGALVVVDCIEGVCVQTE---TVLRQALGERIRPVLTVNKMDRC 163 (832)
Q Consensus 118 ~l~~~D~ailVvda~~g~~~qt~---~~~~~~~~~~~p~ilviNKiD~~ 163 (832)
.+..+|.+++| ||.. ...... ..+..++..++|++||+||+|+.
T Consensus 127 i~anvD~v~iv-~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~ 173 (358)
T 2rcn_A 127 IAANIDQIVIV-SAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLL 173 (358)
T ss_dssp EEECCCEEEEE-EEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGC
T ss_pred HHhcCCEEEEE-EeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCC
Confidence 35788998876 5554 333332 33344566899999999999987
No 479
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=77.94 E-value=7.6 Score=43.18 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.3
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
++.++.+.|++|+|||||+..+....
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 34789999999999999999996553
No 480
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=77.36 E-value=1.2 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
+.|.+.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999965
No 481
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.22 E-value=0.78 Score=48.11 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=17.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..-|+|.|.+||||||+++.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999553
No 482
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.16 E-value=9.9 Score=40.17 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHh
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
.+-|.|++|+|||||+-+++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999998887654
No 483
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=77.13 E-value=1.3 Score=49.26 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
--.++|+|+.|+|||||++.|....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3478999999999999999997654
No 484
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.01 E-value=1.5 Score=46.88 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.3
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHH
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
.+..++.+.|+.|+|||||+.+|..
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3445599999999999999999966
No 485
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=76.94 E-value=1.3 Score=43.60 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
-.+|+|+.|+||||+++++.+..+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999976543
No 486
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=76.58 E-value=0.7 Score=46.93 Aligned_cols=68 Identities=9% Similarity=-0.038 Sum_probs=57.4
Q ss_pred eeeEEEEEEecCcccccHHHHHhhccceeeeecccCCCCcEEEEEEeechhhcCccHHhhhhCCCceeeee
Q 003305 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (832)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (832)
-.-|++.|++|.++.|++++.|.+-.|.|.+++-.+ + +.+.+.+|-.---.+.+.|++.|+|.|...+
T Consensus 171 ra~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~--~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 171 RAHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQ--Q-LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp EECCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSS--B-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred eeeEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccC--C-eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 345788999999999999999999889998877554 3 6778899988777889999999999997654
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.54 E-value=1.7 Score=46.59 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+.|+|+|++|||||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999976643
No 488
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=76.49 E-value=1.2 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++++|+.|+|||||++.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999944
No 489
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=76.46 E-value=1.7 Score=45.87 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=24.8
Q ss_pred HhhhcccC-CeeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 10 RRIMDFKH-NIRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 10 ~~~~~~~~-~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
..+...+. ...++.+.|++|+|||||+.++...
T Consensus 27 ~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 27 KEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 33433332 4568999999999999999999654
No 490
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.35 E-value=1.6 Score=46.29 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhcC
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (832)
+.|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999976543
No 491
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.34 E-value=13 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
+.++.+.|++|+|||+|+.+|...
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999654
No 492
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=76.14 E-value=1.5 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=20.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++|+|+.|+|||||+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999965
No 493
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=76.10 E-value=3.3 Score=45.31 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=40.5
Q ss_pred CceEEEEEeCCCCCCcHHHHHHHhhccCcEEEEEcCCCccc-------hhHHHHHHHHHcCCCC-----eEEEEECCCc
Q 003305 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR-----PVLTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~-------~qt~~~~~~~~~~~~p-----~ilviNKiD~ 162 (832)
+.+.+.|||||+... ..+..++..+|.+|+|+....--. .....+++.+...+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 367899999998765 457778899999999997643110 1122334444444433 2458999883
No 494
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=76.09 E-value=1.2 Score=51.62 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++++|+.|+|||||++.|..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999954
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=75.81 E-value=0.95 Score=46.48 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred CeeeEEEEeCCCCCHHHHHHHHH
Q 003305 18 NIRNMSVIAHVDHGKSTLTDSLV 40 (832)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll 40 (832)
+.+.|+|.|..|+||||+++.|.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999883
No 496
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=75.76 E-value=1.3 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVA 41 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (832)
..++++|+.|+|||||++.|..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999999943
No 497
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=75.70 E-value=1.8 Score=46.52 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.7
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
....+|+++|.+|+||||+...|....
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 446789999999999999999886543
No 498
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=75.48 E-value=1.8 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=21.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHHh
Q 003305 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (832)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (832)
-.+|+++|..|||||||.+.|...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 358999999999999999999554
No 499
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=75.36 E-value=4.3 Score=42.04 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=39.2
Q ss_pred CceEEEEEeCCCCCCcHHH-HHHHhhccCcEEEEEcCCCccchhHHHHHHHHHc----CCCCeE-EEEECCCc
Q 003305 96 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 162 (832)
Q Consensus 96 ~~~~i~liDTPGh~df~~~-~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~----~~~p~i-lviNKiD~ 162 (832)
+.+.+.||||||....... .......+|.+|+|+.+...-......+++.+.. .+.+.+ +++|+.+.
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 3688999999996432111 1123367999999998764322223333333222 356643 78999863
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=75.32 E-value=1.7 Score=43.87 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhc
Q 003305 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (832)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (832)
+.|++.|..|+||||+++.|....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 578999999999999999996553
Done!