BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003307
(832 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 147/575 (25%), Positives = 239/575 (41%), Gaps = 90/575 (15%)
Query: 15 ALG-QSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLN 73
A+G QS + + QL P ++ W SS+ P + G+TC + VTSI L+
Sbjct: 1 AMGSQSLYREIHQLISFKDVLPDKNLLPDW-----SSNKNPCTFDGVTCRDDKVTSIDLS 55
Query: 74 DMGLVGNFSFPTIIGLKMLCNVS----VSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLI 129
L N F + + +SN+ + G+++ SL LDLS N G +
Sbjct: 56 SKPL--NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV 113
Query: 130 P---------------------------SGIVSLKNLMLLNISSNSFEGTFPSGF---GG 159
SG + L +L +L++S+NS G G+ G
Sbjct: 114 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 173
Query: 160 LGKLKYLDLRANRFGGDI---------------------MHLLSQLGSVVHVDLSNNQXX 198
G+LK+L + N+ GD+ + L ++ H+D+S N+
Sbjct: 174 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK-- 231
Query: 199 XXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSF- 257
+ LNIS N VG + P +P +L+ + N G IP F
Sbjct: 232 -LSGDFSRAISTCTELKLLNISSNQFVGPIPP---LP-LKSLQYLSLAENKFTGEIPDFL 286
Query: 258 -NFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXXNQLEGPVGSITSAT-LKKVN 315
+L L L N G++P E P+ ++ LK ++
Sbjct: 287 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 346
Query: 316 LSSNKLSGSLPARVGHCT----IVDLSNNRLSGDL--SRMQNWGNYVEDIHLSSNFLTGM 369
LS N+ SG LP + + + +DLS+N SG + + QN N +++++L +N TG
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 370 VPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLT 429
+P S L S +S N L G +P+ LG+ +L+ + L LN L G + L
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 430 DLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLN 489
L L N+ +G +P +G + +L + L+ N L+G + I + NL L
Sbjct: 467 TLILDFNDLTGEIP---------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 490 LSNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVP 522
LSNN F G+IP L + L +++ N +G +P
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 152/561 (27%), Positives = 229/561 (40%), Gaps = 100/561 (17%)
Query: 77 LVGNFS--FPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIV 134
L G+FS T LK+L ++S+NQ +G I + ++SL++L L+ N F G IP +
Sbjct: 232 LSGDFSRAISTCTELKLL---NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLS 287
Query: 135 -SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI-MHLLSQLGSVVHVDL 192
+ L L++S N F G P FG L+ L L +N F G++ M L ++ + +DL
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 193 SNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVG 252
S N+ L++S N+ G + P+ + L+ NN G
Sbjct: 348 SFNEFSGELPESLTNLSASLLT--LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 253 AIP-SFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXXNQLEGPVGSITSATL 311
IP + + L L L N LSG++P + + E P + TL
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 312 KKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVP 371
+ + L N L+G +P+ + +CT + NW I LS+N LTG +P
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNL---------------NW------ISLSNNRLTGEIP 504
Query: 372 NQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFT-STKLTD 430
+ L K+SNNS G++PA LG L +DL+ N NG + + F S K+
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 431 LNLSGNNF------------SGPLPLQEIQ------------NNPSTGSTQ--------- 457
++G + G L E Q NP +++
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 458 ---NLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDG------------ 502
N S+ LD++YN LSG + I L LNL +N GSIPD
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 503 --------LPNG------LKEFNVSFNNLSGVVPE--NLRNFPDSAFHPGNSLLTFP--- 543
+P L E ++S NNLSG +PE FP + F L +P
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Query: 544 NSPSQQDVPDLTLRGHGNHMK 564
PS D R HG ++
Sbjct: 745 CDPSNADGYAHHQRSHGRRLE 765
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 149/356 (41%), Gaps = 78/356 (21%)
Query: 246 SNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXXNQLEGP--- 302
SN+H+ G++ F SL L L N LSG + N L+ P
Sbjct: 82 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 141
Query: 303 ---------------VGSITSAT------------LKKVNLSSNKLSGSLPAR------- 328
SI+ A LK + +S NK+SG +
Sbjct: 142 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 201
Query: 329 --------------VGHCTI---VDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVP 371
+G C+ +D+S N+LSGD SR + ++ +++SSN G +P
Sbjct: 202 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 372 NQTSQFLRLTSFKVSNNSLEGDLPAVL-GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTD 430
+ L+ S ++ N G++P L G L +DLS NH G + P F + + L
Sbjct: 262 PLPLKSLQYLS--LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 431 LNLSGNNFSGPLPLQEIQNN-----------------PSTGSTQNLSLTSLDLAYNSLSG 473
L LS NNFSG LP+ + P + + + SL +LDL+ N+ SG
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 474 RLLPGISK--FHNLVYLNLSNNKFEGSIPDGLPNG--LKEFNVSFNNLSGVVPENL 525
+LP + + + L L L NN F G IP L N L ++SFN LSG +P +L
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 145/571 (25%), Positives = 236/571 (41%), Gaps = 89/571 (15%)
Query: 18 QSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGL 77
QS + + QL P ++ W SS+ P + G+TC + VTSI L+ L
Sbjct: 8 QSLYREIHQLISFKDVLPDKNLLPDW-----SSNKNPCTFDGVTCRDDKVTSIDLSSKPL 62
Query: 78 VGNFSFPTIIGLKMLCNVS----VSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIP--- 130
N F + + +SN+ + G+++ SL LDLS N G +
Sbjct: 63 --NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLT 120
Query: 131 ------------------------SGIVSLKNLMLLNISSNSFEGTFPSGF---GGLGKL 163
SG + L +L +L++S+NS G G+ G G+L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180
Query: 164 KYLDLRANRFGGDI---------------------MHLLSQLGSVVHVDLSNNQXXXXXX 202
K+L + N+ GD+ + L ++ H+D+S N+
Sbjct: 181 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK---LSG 237
Query: 203 XXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSF--NFV 260
+ LNIS N VG + P +P +L+ + N G IP F
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPP---LP-LKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 261 FSLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXXNQLEGPVGSITSAT-LKKVNLSSN 319
+L L L N G++P E P+ ++ LK ++LS N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 320 KLSGSLPARVGHCT----IVDLSNNRLSGDL--SRMQNWGNYVEDIHLSSNFLTGMVPNQ 373
+ SG LP + + + +DLS+N SG + + QN N +++++L +N TG +P
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 374 TSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNL 433
S L S +S N L G +P+ LG+ +L+ + L LN L G + L L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 434 SGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNN 493
N+ +G +P +G + +L + L+ N L+G + I + NL L LSNN
Sbjct: 474 DFNDLTGEIP---------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 494 KFEGSIPDGLPN--GLKEFNVSFNNLSGVVP 522
F G+IP L + L +++ N +G +P
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 138/491 (28%), Positives = 211/491 (42%), Gaps = 71/491 (14%)
Query: 77 LVGNFS--FPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIV 134
L G+FS T LK+L ++S+NQ +G I + ++SL++L L+ N F G IP +
Sbjct: 235 LSGDFSRAISTCTELKLL---NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLS 290
Query: 135 -SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI-MHLLSQLGSVVHVDL 192
+ L L++S N F G P FG L+ L L +N F G++ M L ++ + +DL
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 193 SNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVG 252
S N+ L++S N+ G + P+ + L+ NN G
Sbjct: 351 SFNEFSGELPESLTNLSASLLT--LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 253 AIP-SFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXXNQLEGPVGSITSATL 311
IP + + L L L N LSG++P + + E P + TL
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 312 KKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVP 371
+ + L N L+G +P+ + +CT + NW I LS+N LTG +P
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNL---------------NW------ISLSNNRLTGEIP 507
Query: 372 NQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFT-STKLTD 430
+ L K+SNNS G++PA LG L +DL+ N NG + + F S K+
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 431 LNLSGNNF------------SGPLPLQEIQ------------NNPSTGSTQ--------- 457
++G + G L E Q NP +++
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 458 ---NLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPD--GLPNGLKEFNV 512
N S+ LD++YN LSG + I L LNL +N GSIPD G GL ++
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 513 SFNNLSGVVPE 523
S N L G +P+
Sbjct: 688 SSNKLDGRIPQ 698
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 149/356 (41%), Gaps = 78/356 (21%)
Query: 246 SNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXXNQLEGP--- 302
SN+H+ G++ F SL L L N LSG + N L+ P
Sbjct: 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144
Query: 303 ---------------VGSITSAT------------LKKVNLSSNKLSGSLPAR------- 328
SI+ A LK + +S NK+SG +
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 204
Query: 329 --------------VGHCTI---VDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVP 371
+G C+ +D+S N+LSGD SR + ++ +++SSN G +P
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 372 NQTSQFLRLTSFKVSNNSLEGDLPAVL-GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTD 430
+ L+ S ++ N G++P L G L +DLS NH G + P F + + L
Sbjct: 265 PLPLKSLQYLS--LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 431 LNLSGNNFSGPLPLQEIQNN-----------------PSTGSTQNLSLTSLDLAYNSLSG 473
L LS NNFSG LP+ + P + + + SL +LDL+ N+ SG
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 474 RLLPGISK--FHNLVYLNLSNNKFEGSIPDGLPNG--LKEFNVSFNNLSGVVPENL 525
+LP + + + L L L NN F G IP L N L ++SFN LSG +P +L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 144/337 (42%), Gaps = 17/337 (5%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
+L+ L L +N F G IP + + L+ L++S N GT PS G L KL+ L L N
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDG 233
G+I L + ++ + L N ++++S N L GE+ G
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL---NWISLSNNRLTGEIPKWIG 511
Query: 234 MPYFDNLEVFDASNNHLVGAIPS-FNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXXX 292
+NL + SNN G IP+ SL L L +N +G++P A
Sbjct: 512 --RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Query: 293 XXXXNQL----EGPVGSITSA--TLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDL 346
+ +G A L+ + S +L+ R+ ++++ G
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-----RLSTRNPCNITSRVYGGHT 624
Query: 347 SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKV 406
S + + + +S N L+G +P + L + +N + G +P +G L +
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 407 IDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLP 443
+DLS N L+G + + T LT+++LS NN SGP+P
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 95 VSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF 153
+ +S N L G I +IGS+ L L+L HN G IP + L+ L +L++SSN +G
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 154 PSGFGGLGKLKYLDLRANRFGGDIMHL 180
P L L +DL N G I +
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 120/296 (40%), Gaps = 54/296 (18%)
Query: 20 DFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVG 79
D +ALLQ+KK + +P+ + SW ++D C R W G+ C T +N++ L G
Sbjct: 7 DKQALLQIKKDLG-NPT--TLSSWLP---TTDCCNRTWLGVLCDTDTQT-YRVNNLDLSG 59
Query: 80 -------------------NFSF------------PTIIGLKMLCNVSVSNNQLMGNITD 108
NF + P I L L + +++ + G I D
Sbjct: 60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
Query: 109 -IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKL-KYL 166
+ I++L LD S+N G +P I SL NL+ + N G P +G KL +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 167 DLRANRFGGDIMHLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVG 226
+ NR G I + L ++ VDLS N Q +++++NSL
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNM---LEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 227 ELFPHDGMPYFDNLEVFDASNNHLVGAIP----SFNFVFSLRILRLGSNQLSGSLP 278
+L + NL D NN + G +P F+ SL + N L G +P
Sbjct: 236 DL---GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV---SFNNLCGEIP 285
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 26/197 (13%)
Query: 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418
++++ ++G +P+ SQ L + S N+L G LP + + P L I N ++G +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 419 LPSFFTSTKL-TDLNLSGNNFSGPLP---------LQEIQNNPSTGSTQNL-----SLTS 463
S+ + +KL T + +S N +G +P ++ N G L +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 464 LDLAYNSLS---GRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLS 518
+ LA NSL+ G++ G+SK NL L+L NN+ G++P GL L NVSFNNL
Sbjct: 226 IHLAKNSLAFDLGKV--GLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 519 GVVPE--NLRNFPDSAF 533
G +P+ NL+ F SA+
Sbjct: 282 GEIPQGGNLQRFDVSAY 298
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 24/160 (15%)
Query: 382 SFKVSNNSLEG-------DLPAVLGTYPELKVIDLS-LNHLNGFLLPSFFTSTKLTDLNL 433
+++V+N L G +P+ L P L + + +N+L G + P+ T+L L +
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 434 SGNNFSGPLP--LQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLS 491
+ N SG +P L +I+ +L +LD +YN+LSG L P IS NLV +
Sbjct: 109 THTNVSGAIPDFLSQIK-----------TLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 492 NNKFEGSIPDGLPNGLKEF---NVSFNNLSGVVPENLRNF 528
N+ G+IPD + K F +S N L+G +P N
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 13/202 (6%)
Query: 222 NSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSF-NFVFSLRILRLGSNQLSGSLPVA 280
N+LVG + P + L ++ ++ GAIP F + + +L L N LSG+LP +
Sbjct: 87 NNLVGPIPP--AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 281 XXXXXXXXXXXXXXXXNQLEGPV----GSITSATLKKVNLSSNKLSGSLPARVGHCTI-- 334
N++ G + GS S + +S N+L+G +P + +
Sbjct: 145 ISSLPNLVGITFDG--NRISGAIPDSYGSF-SKLFTSMTISRNRLTGKIPPTFANLNLAF 201
Query: 335 VDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDL 394
VDLS N L GD S + + IHL+ N L + + L + NN + G L
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTL 260
Query: 395 PAVLGTYPELKVIDLSLNHLNG 416
P L L +++S N+L G
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCG 282
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 95 VSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFP 154
+ ++ N L ++ +G ++L LDL +N +G +P G+ LK L LN+S N+ G P
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 155 SGFGGLGKLKYLDLRA 170
G G L+ D+ A
Sbjct: 286 QG----GNLQRFDVSA 297
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 704 DVLNACSPEKLAGDLHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKR 763
DV PE G L F + + A + + + ++GR G +YK L G+++AVKR
Sbjct: 11 DVPAEEDPEVHLGQLKRFSLRELQVASD-NFSNKNILGRGGFGKVYKGRLADGTLVAVKR 69
Query: 764 LREGIAKGKK-EFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
L+E +G + +F EV+ + H NL+ L+G+ P E+L++ Y+ S+A L+
Sbjct: 70 LKEERXQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT--ERLLVYPYMANGSVASCLR 127
Query: 823 GK 824
+
Sbjct: 128 ER 129
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 130/294 (44%), Gaps = 32/294 (10%)
Query: 232 DGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXX 291
DG+ Y +NL + SNN L P N + IL + +NQ++ P+A
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLA----NLTNLTG 116
Query: 292 XXXXXNQLE--GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRM 349
NQ+ P+ ++T+ L ++ LSSN +S + A G ++ LS DL +
Sbjct: 117 LTLFNNQITDIDPLKNLTN--LNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPL 173
Query: 350 QNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDL 409
N +E + +SSN ++ + + ++ L S +NN + P LG L + L
Sbjct: 174 ANLT-TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228
Query: 410 SLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYN 469
+ N L + + + T LTDL+L+ N S PL +G T+ LT L L N
Sbjct: 229 NGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--------SGLTK---LTELKLGAN 275
Query: 470 SLSG-RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP 522
+S L G++ N L L+ N+ E P L + FNN+S + P
Sbjct: 276 QISNISPLAGLTALTN---LELNENQLEDISPISNLKNLTYLTLYFNNISDISP 326
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 35/212 (16%)
Query: 89 LKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIV-------------- 134
L L + +S+N+ + +I+ + + +LE L ++N + P GI+
Sbjct: 176 LTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 234
Query: 135 ------SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
SL NL L++++N P GL KL L L AN+ + L+ L ++
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALT 290
Query: 189 HVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
+++L+ NQ + NIS+ S V L + +++N +V D S
Sbjct: 291 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVS-- 347
Query: 249 HLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280
S + ++ L G NQ+S P+A
Sbjct: 348 -------SLANLTNINWLSAGHNQISDLTPLA 372
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 704 DVLNACSPEKLAGDLHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKR 763
DV PE G L F + + A + + ++GR G +YK L G ++AVKR
Sbjct: 3 DVPAEEDPEVHLGQLKRFSLRELQVASD-NFXNKNILGRGGFGKVYKGRLADGXLVAVKR 61
Query: 764 LREGIAKGKK-EFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
L+E +G + +F EV+ + H NL+ L+G+ P E+L++ Y+ S+A L+
Sbjct: 62 LKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT--ERLLVYPYMANGSVASCLR 119
Query: 823 GK 824
+
Sbjct: 120 ER 121
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 130/294 (44%), Gaps = 32/294 (10%)
Query: 232 DGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXX 291
DG+ Y +NL + SNN L P N + IL + +NQ++ P+A
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLA----NLTNLTG 115
Query: 292 XXXXXNQLE--GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRM 349
NQ+ P+ ++T+ L ++ LSSN +S + A G ++ LS DL +
Sbjct: 116 LTLFNNQITDIDPLKNLTN--LNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPL 172
Query: 350 QNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDL 409
N +E + +SSN ++ + + ++ L S +NN + P LG L + L
Sbjct: 173 ANLT-TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 227
Query: 410 SLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYN 469
+ N L + + + T LTDL+L+ N S PL +G T+ LT L L N
Sbjct: 228 NGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--------SGLTK---LTELKLGAN 274
Query: 470 SLSG-RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP 522
+S L G++ N L L+ N+ E P L + FNN+S + P
Sbjct: 275 QISNISPLAGLTALTN---LELNENQLEDISPISNLKNLTYLTLYFNNISDISP 325
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 35/212 (16%)
Query: 89 LKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIV-------------- 134
L L + +S+N+ + +I+ + + +LE L ++N + P GI+
Sbjct: 175 LTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 233
Query: 135 ------SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
SL NL L++++N P GL KL L L AN+ + L+ L ++
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALT 289
Query: 189 HVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
+++L+ NQ + NIS+ S V L + +F N +V D S
Sbjct: 290 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-FFANNKVSDVS-- 346
Query: 249 HLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280
S + ++ L G NQ+S P+A
Sbjct: 347 -------SLANLTNINWLSAGHNQISDLTPLA 371
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 129/305 (42%), Gaps = 54/305 (17%)
Query: 232 DGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXX 291
DG+ Y +NL + SNN L P N + IL + +NQ++ P+A
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLA----NLTNLTG 111
Query: 292 XXXXXNQLE--GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRM 349
NQ+ P+ ++T+ L ++ LSSN TI D+S LSG S
Sbjct: 112 LTLFNNQITDIDPLKNLTN--LNRLELSSN-------------TISDIS--ALSGLTSLQ 154
Query: 350 Q-NWGNYVEDIHLSSNFLT----GMVPNQTS------QFLRLTSFKVSNNSLEGDLPAVL 398
Q N+GN V D+ +N T + N+ S + L S +NN + P L
Sbjct: 155 QLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--L 212
Query: 399 GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQN 458
G L + L+ N L + + + T LTDL+L+ N S PL +G T+
Sbjct: 213 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--------SGLTK- 261
Query: 459 LSLTSLDLAYNSLSG-RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNL 517
LT L L N +S L G++ N L L+ N+ E P L + FNN+
Sbjct: 262 --LTELKLGANQISNISPLAGLTALTN---LELNENQLEDISPISNLKNLTYLTLYFNNI 316
Query: 518 SGVVP 522
S + P
Sbjct: 317 SDISP 321
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 35/212 (16%)
Query: 89 LKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIV-------------- 134
L L + +S+N+ + +I+ + + +LE L ++N + P GI+
Sbjct: 171 LTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 229
Query: 135 ------SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
SL NL L++++N P GL KL L L AN+ + L+ L ++
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALT 285
Query: 189 HVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
+++L+ NQ + NIS+ S V L + +F N +V D S
Sbjct: 286 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-FFSNNKVSDVS-- 342
Query: 249 HLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280
S + ++ L G NQ+S P+A
Sbjct: 343 -------SLANLTNINWLSAGHNQISDLTPLA 367
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 129/305 (42%), Gaps = 54/305 (17%)
Query: 232 DGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXX 291
DG+ Y +NL + SNN L P N + IL + +NQ++ P+A
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLA----NLTNLTG 111
Query: 292 XXXXXNQLE--GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRM 349
NQ+ P+ ++T+ L ++ LSSN TI D+S LSG S
Sbjct: 112 LTLFNNQITDIDPLKNLTN--LNRLELSSN-------------TISDIS--ALSGLTSLQ 154
Query: 350 Q-NWGNYVEDIHLSSNFLT----GMVPNQTS------QFLRLTSFKVSNNSLEGDLPAVL 398
Q N+GN V D+ +N T + N+ S + L S +NN + P L
Sbjct: 155 QLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--L 212
Query: 399 GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQN 458
G L + L+ N L + + + T LTDL+L+ N S PL +G T+
Sbjct: 213 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--------SGLTK- 261
Query: 459 LSLTSLDLAYNSLSG-RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNL 517
LT L L N +S L G++ N L L+ N+ E P L + FNN+
Sbjct: 262 --LTELKLGANQISNISPLAGLTALTN---LELNENQLEDISPISNLKNLTYLTLYFNNI 316
Query: 518 SGVVP 522
S + P
Sbjct: 317 SDISP 321
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 35/212 (16%)
Query: 89 LKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIV-------------- 134
L L + +S+N+ + +I+ + + +LE L ++N + P GI+
Sbjct: 171 LTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 229
Query: 135 ------SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
SL NL L++++N P GL KL L L AN+ + L+ L ++
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALT 285
Query: 189 HVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
+++L+ NQ + NIS+ S V L + +++N +V D S
Sbjct: 286 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVS-- 342
Query: 249 HLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280
S + ++ L G NQ+S P+A
Sbjct: 343 -------SLANLTNINWLSAGHNQISDLTPLA 367
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 135/296 (45%), Gaps = 35/296 (11%)
Query: 232 DGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXX 291
DG+ Y +NL + SNN L P N + IL + +NQ++ P+A
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLA----NLTNLTG 111
Query: 292 XXXXXNQLE--GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDL--SNNRLSGDLS 347
NQ+ P+ ++T+ L ++ LSSN +S + A G ++ L S+N+++ DL
Sbjct: 112 LTLFNNQITDIDPLKNLTN--LNRLELSSNTISD-ISALSGLTSLQQLSFSSNQVT-DLK 167
Query: 348 RMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVI 407
+ N +E + +SSN ++ + + ++ L S +NN + P LG L +
Sbjct: 168 PLANLT-TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLA 467
L+ N L + + + T LTDL+L+ N S PL +G T+ LT L L
Sbjct: 223 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--------SGLTK---LTELKLG 269
Query: 468 YNSLSG-RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP 522
N +S L G++ N L L+ N+ E P L + FNN+S + P
Sbjct: 270 ANQISNISPLAGLTALTN---LELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 41/226 (18%)
Query: 81 FSFPTIIGLKMLCNVS------VSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIV 134
FS + LK L N++ +S+N+ + +I+ + + +LE L ++N + P GI+
Sbjct: 158 FSSNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGIL 216
Query: 135 --------------------SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFG 174
SL NL L++++N P GL KL L L AN+
Sbjct: 217 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 175 GDIMHLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGM 234
+ L+ L ++ +++L+ NQ + NIS+ S V L +
Sbjct: 275 N--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Query: 235 PYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280
+++N +V D S S + ++ L G NQ+S P+A
Sbjct: 333 FFYNN-KVSDVS---------SLANLTNINWLSAGHNQISDLTPLA 368
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 135/296 (45%), Gaps = 35/296 (11%)
Query: 232 DGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXX 291
DG+ Y +NL + SNN L P N + IL + +NQ++ P+A
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLA----NLTNLTG 111
Query: 292 XXXXXNQLE--GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDL--SNNRLSGDLS 347
NQ+ P+ ++T+ L ++ LSSN +S + A G ++ L S+N+++ DL
Sbjct: 112 LTLFNNQITDIDPLKNLTN--LNRLELSSNTISD-ISALSGLTSLQQLSFSSNQVT-DLK 167
Query: 348 RMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVI 407
+ N +E + +SSN ++ + + ++ L S +NN + P LG L +
Sbjct: 168 PLANLT-TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLA 467
L+ N L + + + T LTDL+L+ N S PL +G T+ LT L L
Sbjct: 223 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--------SGLTK---LTELKLG 269
Query: 468 YNSLSG-RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP 522
N +S L G++ N L L+ N+ E P L + FNN+S + P
Sbjct: 270 ANQISNISPLAGLTALTN---LELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 41/226 (18%)
Query: 81 FSFPTIIGLKMLCNVS------VSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIV 134
FS + LK L N++ +S+N+ + +I+ + + +LE L ++N + P GI+
Sbjct: 158 FSSNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGIL 216
Query: 135 --------------------SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFG 174
SL NL L++++N P GL KL L L AN+
Sbjct: 217 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 175 GDIMHLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGM 234
+ L+ L ++ +++L+ NQ + NIS+ S V L +
Sbjct: 275 N--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Query: 235 PYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280
+F N +V D S S + ++ L G NQ+S P+A
Sbjct: 333 -FFSNNKVSDVS---------SLANLTNINWLSAGHNQISDLTPLA 368
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 136/296 (45%), Gaps = 35/296 (11%)
Query: 232 DGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXX 291
DG+ Y +NL + SNN L P N + IL + +NQ++ P+A
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLA----NLTNLTG 111
Query: 292 XXXXXNQLE--GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTI--VDLSNNRLSGDLS 347
NQ+ P+ ++T+ L ++ LSSN +S + A G ++ ++ S+N+++ DL
Sbjct: 112 LTLFNNQITDIDPLKNLTN--LNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVT-DLK 167
Query: 348 RMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVI 407
+ N +E + +SSN ++ + + ++ L S +NN + P LG L +
Sbjct: 168 PLANLT-TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLA 467
L+ N L + + + T LTDL+L+ N S PL +G T+ LT L L
Sbjct: 223 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--------SGLTK---LTELKLG 269
Query: 468 YNSLSG-RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP 522
N +S L G++ N L L+ N+ E P L + FNN+S + P
Sbjct: 270 ANQISNISPLAGLTALTN---LELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 41/227 (18%)
Query: 80 NFSFPTIIGLKMLCNVS------VSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGI 133
NFS + LK L N++ +S+N+ + +I+ + + +LE L ++N + P GI
Sbjct: 157 NFSSNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGI 215
Query: 134 V--------------------SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
+ SL NL L++++N P GL KL L L AN+
Sbjct: 216 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDG 233
+ L+ L ++ +++L+ NQ + NIS+ S V L
Sbjct: 274 SN--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR 331
Query: 234 MPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280
+ +++N +V D S S + ++ L G NQ+S P+A
Sbjct: 332 LFFYNN-KVSDVS---------SLANLTNINWLSAGHNQISDLTPLA 368
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418
++L+ N L + +++ +LTS V N++ P + P LKV++L N L+
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 419 LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG 478
+F T LT+L+L N+ +Q+I+NNP +L +LDL++N LS L
Sbjct: 100 DKTFAFCTNLTELHLMSNS------IQKIKNNPFVKQK---NLITLDLSHNGLSSTKLGT 150
Query: 479 ISKFHNLVYLNLSNNKFEGSIPDGLP----NGLKEFNVSFNNLSGVVP 522
+ NL L LSNNK + + L + LK+ +S N + P
Sbjct: 151 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 198
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 69 SIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGS-IQSLEFLDLSHNL--F 125
SI L + + +FSF LK L ++++ +N + G +++ + + +L++L LS++
Sbjct: 321 SISLASLPKIDDFSFQ---WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 377
Query: 126 HGLIPSGIVSLKN--LMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI 177
L VSL + L +LN++ N F LG L+ LDL N G ++
Sbjct: 378 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 431
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 112 IQSLEFLDLSHN----LFHGLIPSGIV----SLKNLMLLNISSNSFEGTFPSGFGGLGKL 163
++ LE LDL HN L+ P G + L +L +LN+ SN F+ F L +L
Sbjct: 513 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 572
Query: 164 KYLDLRAN 171
K +DL N
Sbjct: 573 KIIDLGLN 580
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418
++L+ N L + +++ +LTS V N++ P + P LKV++L N L+
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 419 LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG 478
+F T LT+L+L N+ +Q+I+NNP +L +LDL++N LS L
Sbjct: 90 DKTFAFCTNLTELHLMSNS------IQKIKNNPFVKQK---NLITLDLSHNGLSSTKLGT 140
Query: 479 ISKFHNLVYLNLSNNKFEGSIPDGLP----NGLKEFNVSFNNLSGVVP 522
+ NL L LSNNK + + L + LK+ +S N + P
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 69 SIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGS-IQSLEFLDLSHNL--F 125
SI L + + +FSF LK L ++++ +N + G +++ + + +L++L LS++
Sbjct: 311 SISLASLPKIDDFSFQ---WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367
Query: 126 HGLIPSGIVSLKN--LMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI 177
L VSL + L +LN++ N F LG L+ LDL N G ++
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 112 IQSLEFLDLSHN----LFHGLIPSGIV----SLKNLMLLNISSNSFEGTFPSGFGGLGKL 163
++ LE LDL HN L+ P G + L +L +LN+ SN F+ F L +L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 164 KYLDLRAN 171
K +DL N
Sbjct: 563 KIIDLGLN 570
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418
++L+ N L + +++ +LTS V N++ P + P LKV++L N L+
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 419 LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG 478
+F T LT+L+L N+ +Q+I+NNP +L +LDL++N LS L
Sbjct: 95 DKTFAFCTNLTELHLMSNS------IQKIKNNPFVKQK---NLITLDLSHNGLSSTKLGT 145
Query: 479 ISKFHNLVYLNLSNNKFEGSIPDGLP----NGLKEFNVSFNNLSGVVP 522
+ NL L LSNNK + + L + LK+ +S N + P
Sbjct: 146 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 193
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 69 SIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGS-IQSLEFLDLSHNL--F 125
SI L + + +FSF LK L ++++ +N + G +++ + + +L++L LS++
Sbjct: 316 SISLASLPKIDDFSFQ---WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 372
Query: 126 HGLIPSGIVSLKN--LMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI 177
L VSL + L +LN++ N F LG L+ LDL N G ++
Sbjct: 373 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 426
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 112 IQSLEFLDLSHN----LFHGLIPSGIV----SLKNLMLLNISSNSFEGTFPSGFGGLGKL 163
++ LE LDL HN L+ P G + L +L +LN+ SN F+ F L +L
Sbjct: 508 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 567
Query: 164 KYLDLRAN 171
K +DL N
Sbjct: 568 KIIDLGLN 575
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 73
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + +V N +
Sbjct: 74 NIVRLRYFFYSSGEKKDVVYLNLV 97
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + +GK RE++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQGKAFKNRELQIMRKLDHC 73
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 74 NIVRLRYFFYSSGEKKDEVYLNLV 97
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + +GK RE++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQGKAFKNRELQIMRKLDHC 73
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 74 NIVRLRYFFYSSGEKKDEVYLNLV 97
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + +GK RE++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQGKAFKNRELQIMRKLDHC 73
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 74 NIVRLRYFFYSSGEKKDEVYLNLV 97
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 23 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 78
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 79 NIVRLRYFFYSSGEKKDEVYLNLV 102
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 726 MFTAEELSHAPAEVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGN 784
+F +L H EV+G+ C G K T ++G ++ +K L + ++ F +EVK +
Sbjct: 6 IFRPSDLIHG--EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRC 63
Query: 785 IKHPNLVSLQGYYWGPKEHEKLVISNYINAQSL 817
++HPN++ G + K+ I+ YI +L
Sbjct: 64 LEHPNVLKFIGVLY--KDKRLNFITEYIKGGTL 94
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 30 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 85
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 86 NIVRLRYFFYSSGEKKDEVYLNLV 109
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 46 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 101
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 102 NIVRLRYFFYSSGEKKDEVYLNLV 125
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 97 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 152
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 153 NIVRLRYFFYSSGEKKDEVYLNLV 176
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 31 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 86
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 87 NIVRLRYFFYSSGEKKDEVYLNLV 110
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 37 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 92
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 93 NIVRLRYFFYSSGEKKDEVYLNLV 116
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 52 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 107
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 108 NIVRLRYFFYSSGEKKDEVYLNLV 131
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 26 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 81
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 82 NIVRLRYFFYSSGEKKDEVYLNLV 105
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 52 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 107
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 108 NIVRLRYFFYSSGEKKDEVYLNLV 131
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 73
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 74 NIVRLRYFFYSSGEKKDEVYLNLV 97
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 22 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 77
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 78 NIVRLRYFFYSSGEKKDEVYLNLV 101
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 19 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 74
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 75 NIVRLRYFFYSSGEKKDEVYLNLV 98
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 73
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 74 NIVRLRYFFYSSGEKKDEVYLNLV 97
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 73
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 74 NIVRLRYFFYSSGEKKDEVYLNLV 97
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 56 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 111
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 112 NIVRLRYFFYSSGEKKDEVYLNLV 135
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 30 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 85
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 86 NIVRLRYFFYSSGEKKDEVYLNLV 109
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 54 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 109
Query: 789 NLVSLQGYYWGPKEHEKLVISNYI 812
N+V L+ +++ E + V N +
Sbjct: 110 NIVRLRYFFYSSGEKKDEVYLNLV 133
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNLVS 792
E +G +G +YKA G I+A+KR+R EGI RE+ L + HPN+VS
Sbjct: 27 EKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTA---IREISLLKELHHPNIVS 83
Query: 793 L 793
L
Sbjct: 84 L 84
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNLVS 792
E +G +G +YKA G I+A+KR+R EGI RE+ L + HPN+VS
Sbjct: 27 EKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTA---IREISLLKELHHPNIVS 83
Query: 793 L 793
L
Sbjct: 84 L 84
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 40 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 99
Query: 814 AQSLAVYLQG 823
SL YLQ
Sbjct: 100 YGSLRDYLQA 109
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 89/200 (44%), Gaps = 21/200 (10%)
Query: 83 FPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHN--LFHGLIPS---GIVSLK 137
FPT+ LK L ++ ++N+ GN + SLEFLDLS N F G G SLK
Sbjct: 319 FPTL-KLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 138 NLMLLNISSNSFEG--TFPSGFGGLGKLKYLDLR-ANRFGGDIMHLLSQLGSVVHVDLSN 194
L L SF G T S F GL +L++LD + +N + L +++++D+S+
Sbjct: 377 YLDL------SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 195 NQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAI 254
+ L ++ NS P D NL D S L
Sbjct: 431 TH---TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLS 486
Query: 255 PS-FNFVFSLRILRLGSNQL 273
P+ FN + SL++L + SNQL
Sbjct: 487 PTAFNSLSSLQVLNMASNQL 506
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 369 MVPNQTSQFLRLTSFKVSNN--------SLEGDLPAVLGTY-----PELKVIDLSLNHLN 415
+VPN T Q + L +K+ +N L + LG+Y PEL+V+DLS +
Sbjct: 6 VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 416 GFLLPSFFTSTKLTDLNLSGN--------NFSGPLPLQE-IQNNPSTGSTQNL------S 460
++ + + L+ L L+GN FSG LQ+ + + S +N +
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 461 LTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLSNNKFEG 497
L L++A+N + LP S NL +L+LS+NK +
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 112 IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171
+++L FLDLS L P+ SL +L +LN++SN + F L L+ + L N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 37 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 96
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 97 YGSLRDYLQ 105
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 55 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 114
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 115 YGSLRDYLQ 123
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 68 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 127
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 128 YGSLRDYLQ 136
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 41 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 100
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 101 YGSLRDYLQ 109
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 43 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 102
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 103 YGSLRDYLQ 111
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 37 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 96
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 97 YGSLRDYLQ 105
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 44 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 103
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 104 YGSLRDYLQ 112
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 37 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 96
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 97 YGSLRDYLQ 105
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 55 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 114
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 115 YGSLRDYLQ 123
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 42 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 101
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 102 YGSLRDYLQ 110
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 40 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 99
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 100 YGSLRDYLQ 108
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 35 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 94
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 95 YGSLRDYLQ 103
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 36 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 95
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 96 YGSLRDYLQ 104
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I Y+
Sbjct: 38 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 97
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 98 YGSLRDYLQ 106
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPN 789
E+++ +VIG G +++A L +A+K+ + + K+ RE++ + +KHPN
Sbjct: 38 REIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKK----VLQDKRFKNRELQIMRIVKHPN 93
Query: 790 LVSLQGYYW--GPKEHE 804
+V L+ +++ G K+ E
Sbjct: 94 VVDLKAFFYSNGDKKDE 110
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 739 VIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+IG G +YK L G+ +A+KR ++G +EF E++ L +HP+LVSL G+
Sbjct: 46 LIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGF-- 103
Query: 799 GPKEHEKLVISNYINAQSLAVYLQGKGL 826
+ +E ++I Y+ +L +L G L
Sbjct: 104 CDERNEMILIYKYMENGNLKRHLYGSDL 131
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ + ++F RE++ L +++H N+V +G + +I ++
Sbjct: 40 NTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLP 99
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 100 YGSLREYLQ 108
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 739 VIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+IG G +YK L G+ +A+KR ++G +EF E++ L +HP+LVSL G+
Sbjct: 46 LIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGF-- 103
Query: 799 GPKEHEKLVISNYINAQSLAVYLQGKGL 826
+ +E ++I Y+ +L +L G L
Sbjct: 104 CDERNEMILIYKYMENGNLKRHLYGSDL 131
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQG 795
G C G L KA S +A+K L+ G + ++EF E +G +HPN++ L+G
Sbjct: 28 GEVCRGRL-KAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEG 82
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
T+I+ L+ FS T++ L +++ +L D G++ L LDLSHN
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS 91
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L P +L L +L++S N GLG+L+ L L+ N LL+ +
Sbjct: 92 L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 188 VHVDLSNNQ 196
+ L+NNQ
Sbjct: 151 EKLSLANNQ 159
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 302 PVGSITS-ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL-SGDLSRMQNWGNYVEDI 359
P+ ++ A+ +VN +L+ P TI+ LS N L + L+ + + + +
Sbjct: 2 PICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 60
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
+L LT + + T L + +S+N L+ LP + T P L V+D+S N L L
Sbjct: 61 NLDRCELTKLQVDGTLPVL--GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ +L +L L GN E++ P T L L LA N L+ +
Sbjct: 118 GALRGLGELQELYLKGN---------ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 480 SKFHNLVYLNLSNNKFEGSIPDG 502
+ NL L L N +IP G
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKG 190
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 111 SIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRA 170
+++ L+ L+L++N + + L NL +LN+S N + S F GL K+ Y+DL+
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 171 NRFG 174
N
Sbjct: 348 NHIA 351
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
S+ LDLSH L +LK+L +LN++ N F GL L+ L+L N
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQ 196
G L V ++DL N
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNH 349
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQG 795
G C G L KA S +A+K L+ G + ++EF E +G +HPN++ L+G
Sbjct: 30 GEVCRGRL-KAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEG 84
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
T+I+ L+ FS T++ L +++ +L D G++ L LDLSHN
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS 91
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L P +L L +L++S N GLG+L+ L L+ N LL+ +
Sbjct: 92 L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 188 VHVDLSNNQ 196
+ L+NNQ
Sbjct: 151 EKLSLANNQ 159
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 302 PVGSITS-ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL-SGDLSRMQNWGNYVEDI 359
P+ ++ A+ +VN +L+ P TI+ LS N L + L+ + + + +
Sbjct: 2 PICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 60
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
+L LT + + T L + +S+N L+ LP + T P L V+D+S N L L
Sbjct: 61 NLDRCELTKLQVDGTLPVL--GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ +L +L L GN E++ P T L L LA N L+ +
Sbjct: 118 GALRGLGELQELYLKGN---------ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 480 SKFHNLVYLNLSNNKFEGSIPDG 502
+ NL L L N +IP G
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKG 190
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
T+I+ L+ FS T++ L +++ +L D G++ L LDLSHN
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS 91
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L P +L L +L++S N GLG+L+ L L+ N LL+ +
Sbjct: 92 L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 188 VHVDLSNNQ 196
+ L+NNQ
Sbjct: 151 EKLSLANNQ 159
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 302 PVGSITS-ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL-SGDLSRMQNWGNYVEDI 359
P+ ++ A+ +VN +L+ P TI+ LS N L + L+ + + + +
Sbjct: 2 PICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 60
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
+L LT + + T L + +S+N L+ LP + T P L V+D+S N L L
Sbjct: 61 NLDRCELTKLQVDGTLPVL--GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ +L +L L GN E++ P T L L LA N L+ +
Sbjct: 118 GALRGLGELQELYLKGN---------ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 480 SKFHNLVYLNLSNNKFEGSIPDG 502
+ NL L L N +IP G
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKG 190
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
T+I+ L+ FS T++ L +++ +L D G++ L LDLSHN
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS 91
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L P +L L +L++S N GLG+L+ L L+ N LL+ +
Sbjct: 92 L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 188 VHVDLSNNQ 196
+ L+NNQ
Sbjct: 151 EKLSLANNQ 159
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 302 PVGSITS-ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL-SGDLSRMQNWGNYVEDI 359
P+ ++ A+ +VN +L+ P TI+ LS N L + L+ + + + +
Sbjct: 2 PICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 60
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
+L LT + + T L + +S+N L+ LP + T P L V+D+S N L L
Sbjct: 61 NLDRCELTKLQVDGTLPVL--GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ +L +L L GN E++ P T L L LA N L+ +
Sbjct: 118 GALRGLGELQELYLKGN---------ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
Query: 480 SKFHNLVYLNLSNNKFEGSIPDG 502
+ NL L L N +IP G
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKG 190
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 740 IGRSCHGTLYKAT-LDSGSILAVKRLREGIAKG--KKEFAREVKKLGNIKHPNLVSL 793
IG +G ++K D+G I+A+K+ E KK RE++ L +KHPNLV+L
Sbjct: 11 IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNL 67
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKK--EFAREVKKLGNIKHPNLVSLQG 795
E IG GT+++A GS +AVK L E ++ EF REV + ++HPN+V G
Sbjct: 43 EKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMG 101
Query: 796 YYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
P +++ Y++ SL L G
Sbjct: 102 AVTQPPNLS--IVTEYLSRGSLYRLLHKSG 129
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKK--EFAREVKKLGNIKHPNLVSLQG 795
E IG GT+++A GS +AVK L E ++ EF REV + ++HPN+V G
Sbjct: 43 EKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMG 101
Query: 796 YYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
P +++ Y++ SL L G
Sbjct: 102 AVTQPPNLS--IVTEYLSRGSLYRLLHKSG 129
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 88/224 (39%), Gaps = 62/224 (27%)
Query: 83 FPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHN------------------- 123
FPT+ LK L ++ ++N+ GN + SLEFLDLS N
Sbjct: 343 FPTL-KLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK 400
Query: 124 ----LFHGLIP---------------------------SGIVSLKNLMLLNISSNSFEGT 152
F+G+I S +SL+NL+ L+IS
Sbjct: 401 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460
Query: 153 FPSGFGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXX 211
F F GL L+ L + N F + + + ++L ++ +DLS Q
Sbjct: 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ---LEQLSPTAFNSL 517
Query: 212 XXXQYLNISENSLVGELFPHDGMPY--FDNLEVFDASNNHLVGA 253
Q LN+S N+ F D PY ++L+V D S NH++ +
Sbjct: 518 SSLQVLNMSHNN----FFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 369 MVPNQTSQFLRLTSFKVSNN--------SLEGDLPAVLGTY-----PELKVIDLSLNHLN 415
+VPN T Q + L +K+ +N L + LG+Y PEL+V+DLS +
Sbjct: 30 VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 89
Query: 416 GFLLPSFFTSTKLTDLNLSGN--------NFSGPLPLQE-IQNNPSTGSTQNL------S 460
++ + + L+ L L+GN FSG LQ+ + + S +N +
Sbjct: 90 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149
Query: 461 LTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLSNNKFEG 497
L L++A+N + LP S NL +L+LS+NK +
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 78
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y+N SL +L+G+
Sbjct: 79 VSEEPIYIVTEYMNKGSLLDFLKGE 103
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 716 GDLHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEF 775
G LH+ D + E+ EV+GR G + KA + + A+K++ +K F
Sbjct: 1 GSLHMID----YKEIEVE----EVVGRGAFGVVCKAKWRAKDV-AIKQIES--ESERKAF 49
Query: 776 AREVKKLGNIKHPNLVSLQG 795
E+++L + HPN+V L G
Sbjct: 50 IVELRQLSRVNHPNIVKLYG 69
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 78
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y+N SL +L+G+
Sbjct: 79 VSEEPIYIVTEYMNKGSLLDFLKGE 103
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 88/224 (39%), Gaps = 62/224 (27%)
Query: 83 FPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHN------------------- 123
FPT+ LK L ++ ++N+ GN + SLEFLDLS N
Sbjct: 319 FPTL-KLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 124 ----LFHGLIP---------------------------SGIVSLKNLMLLNISSNSFEGT 152
F+G+I S +SL+NL+ L+IS
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 153 FPSGFGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXX 211
F F GL L+ L + N F + + + ++L ++ +DLS Q
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ---LEQLSPTAFNSL 493
Query: 212 XXXQYLNISENSLVGELFPHDGMPY--FDNLEVFDASNNHLVGA 253
Q LN+S N+ F D PY ++L+V D S NH++ +
Sbjct: 494 SSLQVLNMSHNN----FFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 369 MVPNQTSQFLRLTSFKVSNN--------SLEGDLPAVLGTY-----PELKVIDLSLNHLN 415
+VPN T Q + L +K+ +N L + LG+Y PEL+V+DLS +
Sbjct: 6 VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 416 GFLLPSFFTSTKLTDLNLSGN--------NFSGPLPLQE-IQNNPSTGSTQNL------S 460
++ + + L+ L L+GN FSG LQ+ + + S +N +
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 461 LTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLSNNKFEG 497
L L++A+N + LP S NL +L+LS+NK +
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 740 IGRSCHGTLYKATL-DSGSILAVKRLREGIAKGK-------KEFAREVKKLGNIKHPNLV 791
IG+ G ++K L S++A+K L G ++G+ +EF REV + N+ HPN+V
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 792 SLQGYYWGP 800
L G P
Sbjct: 87 KLYGLMHNP 95
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418
++L+ N L + P +++ +L NS+ P + P LKV++L N L+
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 419 LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG 473
+F T LT+L+L N+ + +I++NP +L LDL++N LS
Sbjct: 90 DQTFVFCTNLTELDLMSNS------IHKIKSNPFKNQK---NLIKLDLSHNGLSS 135
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 94 NVSVSNNQLMGNITDIGS---IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFE 150
N+S++NNQL+ S +L LDLS+N H + L +L L++ N+ +
Sbjct: 226 NLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQ 285
Query: 151 GTFPSGFGGLGKLKYLDLR 169
P F GL L+YL L+
Sbjct: 286 RLSPRSFYGLSNLRYLSLK 304
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 740 IGRSCHGTLYKATL-DSGSILAVKRLREGIAKGK-------KEFAREVKKLGNIKHPNLV 791
IG+ G ++K L S++A+K L G ++G+ +EF REV + N+ HPN+V
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 792 SLQGYYWGP 800
L G P
Sbjct: 87 KLYGLMHNP 95
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 740 IGRSCHGTLYKATL-DSGSILAVKRLREGIAKGK-------KEFAREVKKLGNIKHPNLV 791
IG+ G ++K L S++A+K L G ++G+ +EF REV + N+ HPN+V
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 792 SLQGYYWGP 800
L G P
Sbjct: 87 KLYGLMHNP 95
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 109 IGSIQSLEFLDLSHNLFHGLIPSGI--VSLKNLMLLNISSNSFE---------------G 151
+G+ + ++ D+S +F GL + ++L+ NISSN+F
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291
Query: 152 TFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNN 195
PSG GL LK L L AN+F S S+ H+ + N
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G+++AVK+L+ +++F RE++ L + +V +G +GP E ++ Y+
Sbjct: 34 NTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRPELRLVMEYLP 93
Query: 814 AQSLAVYLQ 822
+ L +LQ
Sbjct: 94 SGCLRDFLQ 102
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
EV+GR G + KA + + A+K++ +K F E+++L + HPN+V L G
Sbjct: 14 EVVGRGAFGVVCKAKWRAKDV-AIKQIES--ESERKAFIVELRQLSRVNHPNIVKLYG 68
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + I+H LV L Y
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKIRHEKLVQL---YAV 81
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 82 VSEEPIYIVTEYMSKGSLLDFLKGE 106
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L K +A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 43 GEVCSGRL-KVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVV-- 99
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++I+ Y+ SL +L+
Sbjct: 100 TKCKPVMIITEYMENGSLDAFLR 122
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 369 MVPNQTSQFLRLTSFKVSNN--------SLEGDLPAVLGTY-----PELKVIDLSLNHLN 415
+VPN T Q + L +K+ +N L + LG+Y PEL+V+DLS +
Sbjct: 7 VVPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ 66
Query: 416 GFLLPSFFTSTKLTDLNLSGN--------NFSGPLPLQE-IQNNPSTGSTQNL------S 460
++ + + L+ L L+GN FSG LQ+ + + S +N +
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 126
Query: 461 LTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLSNNKFEG 497
L L++A+N + LP S NL +L+LS+NK +
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 36.2 bits (82), Expect = 0.073, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 15 LGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQL---YAV 70
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 71 VSEEPIYIVTEYMSKGSLLDFLKGE 95
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 36.2 bits (82), Expect = 0.073, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 17 LGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQL---YAV 72
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 73 VSEEPIYIVTEYMSKGSLLDFLKGE 97
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 36.2 bits (82), Expect = 0.073, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 16 LGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQL---YAV 71
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 72 VSEEPIXIVTEYMSKGSLLDFLKGE 96
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 369 MVPNQTSQFLRLTSFKVSNN--------SLEGDLPAVLGTY-----PELKVIDLSLNHLN 415
+VPN T Q + L +K+ +N L + LG+Y PEL+V+DLS +
Sbjct: 8 VVPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ 67
Query: 416 GFLLPSFFTSTKLTDLNLSGN--------NFSGPLPLQE-IQNNPSTGSTQNL------S 460
++ + + L+ L L+GN FSG LQ+ + + S +N +
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 127
Query: 461 LTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLSNNKFEG 497
L L++A+N + LP S NL +L+LS+NK +
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
T+I+ L+ FS T++ L +++ +L D G++ L LDLSHN
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQS 91
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L P +L L +L++S N GLG+L+ L L+ N LL+ +
Sbjct: 92 L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 188 VHVDLSNN 195
+ L+NN
Sbjct: 151 EKLSLANN 158
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 302 PVGSITS-ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL-SGDLSRMQNWGNYVEDI 359
P+ ++ A+ +VN L+ P TI+ LS N L + L+ + + + +
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 60
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
+L LT + + T L + +S+N L+ LP + T P L V+D+S N L L
Sbjct: 61 NLDRAELTKLQVDGTLPVL--GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ +L +L L GN E++ P T L L LA N+L+ +
Sbjct: 118 GALRGLGELQELYLKGN---------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 480 SKFHNLVYLNLSNNKFEGSIPDG 502
+ NL L L N +IP G
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKG 190
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L K +A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 22 GEVCSGRL-KVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVV-- 78
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++I+ Y+ SL +L+
Sbjct: 79 TKCKPVMIITEYMENGSLDAFLR 101
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFP--SGFGGLGKLKYLDLRA 170
Q LE+LD+SHN + + SL++ L++S N F+ P FG L KL +L L A
Sbjct: 100 QDLEYLDVSHNRLQNISCCPMASLRH---LDLSFNDFD-VLPVCKEFGNLTKLTFLGLSA 155
Query: 171 NRF 173
+F
Sbjct: 156 AKF 158
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
T+I+ L+ FS T++ L +++ +L D G++ L LDLSHN
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQS 91
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L P +L L +L++S N GLG+L+ L L+ N LL+ +
Sbjct: 92 L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 188 VHVDLSNN 195
+ L+NN
Sbjct: 151 EKLSLANN 158
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 302 PVGSITS-ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL-SGDLSRMQNWGNYVEDI 359
P+ ++ A+ +VN L+ P TI+ LS N L + L+ + + + +
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 60
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
+L LT + + T L + +S+N L+ LP + T P L V+D+S N L L
Sbjct: 61 NLDRAELTKLQVDGTLPVL--GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ +L +L L GN E++ P T L L LA N+L+ +
Sbjct: 118 GALRGLGELQELYLKGN---------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 480 SKFHNLVYLNLSNNKFEGSIPDG 502
+ NL L L N +IP G
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKG 190
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L K +A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 28 GEVCSGRL-KVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVV-- 84
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++I+ Y+ SL +L+
Sbjct: 85 TKCKPVMIITEYMENGSLDAFLR 107
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
T+I+ L+ FS T++ L +++ +L D G++ L LDLSHN
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQS 91
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L P +L L +L++S N GLG+L+ L L+ N LL+ +
Sbjct: 92 L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 188 VHVDLSNN 195
+ L+NN
Sbjct: 151 EKLSLANN 158
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 302 PVGSITS-ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL-SGDLSRMQNWGNYVEDI 359
P+ ++ A+ +VN L+ P TI+ LS N L + L+ + + + +
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 60
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
+L LT + + T L + +S+N L+ LP + T P L V+D+S N L L
Sbjct: 61 NLDRAELTKLQVDGTLPVL--GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ +L +L L GN E++ P T L L LA N+L+ +
Sbjct: 118 GALRGLGELQELYLKGN---------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 480 SKFHNLVYLNLSNNKFEGSIPDG 502
+ NL L L N +IP G
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKG 190
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
T+I+ L+ FS T++ L +++ +L D G++ L LDLSHN
Sbjct: 34 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS 92
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L P +L L +L++S N GLG+L+ L L+ N LL+ +
Sbjct: 93 L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 188 VHVDLSNN 195
+ L+NN
Sbjct: 152 EKLSLANN 159
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 302 PVGSITS-ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL-SGDLSRMQNWGNYVEDI 359
P+ ++ A+ +VN L+ P TI+ LS N L + L+ + + + +
Sbjct: 3 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 61
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
+L LT + + T L + +S+N L+ LP + T P L V+D+S N L L
Sbjct: 62 NLDRCELTKLQVDGTLPVL--GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 118
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ +L +L L GN E++ P T L L LA N+L+ +
Sbjct: 119 GALRGLGELQELYLKGN---------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 169
Query: 480 SKFHNLVYLNLSNNKFEGSIPDG 502
+ NL L L N +IP G
Sbjct: 170 NGLENLDTLLLQENSLY-TIPKG 191
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 13/139 (9%)
Query: 309 ATLKKVNLSSNKLSGSLPARVGH----CTIVDLSNNRL----SGDLSRMQNWGNYVEDIH 360
A KK++L SNKLS SLP++ H ++ L++N+L +G ++N +E +
Sbjct: 37 ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN----LETLW 91
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
++ N L + Q + L ++ N L+ P V + +L + L N L
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 421 SFFTSTKLTDLNLSGNNFS 439
F T L +L L N
Sbjct: 152 VFDKLTSLKELRLYNNQLK 170
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 111 SIQSLEFLDLSHNLFHGLIPSGIV-SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169
+++LE L ++ N L P G+ L NL L + N + P F L KL YL L
Sbjct: 83 ELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQ 196
N + +L S+ + L NNQ
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQ 168
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
T+I+ L+ FS T++ L +++ +L D G++ L LDLSHN
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS 91
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L P +L L +L++S N GLG+L+ L L+ N LL+ +
Sbjct: 92 L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 188 VHVDLSNN 195
+ L+NN
Sbjct: 151 EKLSLANN 158
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 16/203 (7%)
Query: 302 PVGSITS-ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL-SGDLSRMQNWGNYVEDI 359
P+ ++ A+ +VN L+ P TI+ LS N L + L+ + + + +
Sbjct: 2 PICEVSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 60
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
+L LT + + T L + +S+N L+ LP + T P L V+D+S N L L
Sbjct: 61 NLDRCELTKLQVDGTLPVL--GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ +L +L L GN E++ P T L L LA N L+ +
Sbjct: 118 GALRGLGELQELYLKGN---------ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLL 168
Query: 480 SKFHNLVYLNLSNNKFEGSIPDG 502
+ NL L L N +IP G
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKG 190
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
T+I+ L+ FS T++ L +++ +L D G++ L LDLSHN
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS 91
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L P +L L +L++S N GLG+L+ L L+ N LL+ +
Sbjct: 92 L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 188 VHVDLSNN 195
+ L+NN
Sbjct: 151 EKLSLANN 158
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 302 PVGSITS-ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL-SGDLSRMQNWGNYVEDI 359
P+ ++ A+ +VN L+ P TI+ LS N L + L+ + + + +
Sbjct: 2 PICEVSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 60
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
+L LT + + T L + +S+N L+ LP + T P L V+D+S N L L
Sbjct: 61 NLDRCELTKLQVDGTLPVL--GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ +L +L L GN E++ P T L L LA N+L+ +
Sbjct: 118 GALRGLGELQELYLKGN---------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 480 SKFHNLVYLNLSNNKFEGSIPDG 502
+ NL L L N +IP G
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKG 190
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 369 MVPNQTSQFLRLTSFKVSNN--------SLEGDLPAVLGTY-----PELKVIDLSLNHLN 415
+VPN T Q + L +K+ +N L + LG+Y PEL+V+DLS +
Sbjct: 6 VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 416 GFLLPSFFTSTKLTDLNLSGN--------NFSGPLPLQE-IQNNPSTGSTQNL------S 460
++ + + L+ L L+GN FSG LQ+ + + S +N +
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 461 LTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLSNNKFEG 497
L L++A+N + LP S NL +L+LS+NK +
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G+++AVK+L+ +++F RE++ L + +V +G +GP ++ Y+
Sbjct: 38 NTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLP 97
Query: 814 AQSLAVYLQ 822
+ L +LQ
Sbjct: 98 SGCLRDFLQ 106
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 81
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 82 VSEEPIYIVTEYMSKGSLLDFLKGE 106
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G+++AVK+L+ +++F RE++ L + +V +G +GP ++ Y+
Sbjct: 37 NTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLP 96
Query: 814 AQSLAVYLQ 822
+ L +LQ
Sbjct: 97 SGCLRDFLQ 105
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 59 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 115
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ Y+ SL +L+
Sbjct: 116 TKSKPVMIVTEYMENGSLDSFLR 138
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 247
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 248 VSEEPIYIVTEYMSKGSLLDFLKGE 272
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 81
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 82 VSEEPIYIVTEYMSKGSLLDFLKGE 106
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 247
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 248 VSEEPIYIVTEYMSKGSLLDFLKGE 272
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G+++AVK+L+ +++F RE++ L + +V +G +GP ++ Y+
Sbjct: 50 NTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLP 109
Query: 814 AQSLAVYLQ 822
+ L +LQ
Sbjct: 110 SGCLRDFLQ 118
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 59 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 115
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ Y+ SL +L+
Sbjct: 116 TKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 59 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 115
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ Y+ SL +L+
Sbjct: 116 TKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 330
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 331 VSEEPIYIVTEYMSKGSLLDFLKGE 355
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 47 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 103
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ Y+ SL +L+
Sbjct: 104 TKSKPVMIVTEYMENGSLDSFLR 126
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 59 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 115
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ Y+ SL +L+
Sbjct: 116 TKSKPVMIVTEYMENGSLDSFLR 138
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNLVS 792
E IG +G +YKA + G A+K++R EGI RE+ L +KH N+V
Sbjct: 8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT---IREISILKELKHSNIVK 64
Query: 793 L 793
L
Sbjct: 65 L 65
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNLVS 792
E IG +G +YKA + G A+K++R EGI RE+ L +KH N+V
Sbjct: 8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT---IREISILKELKHSNIVK 64
Query: 793 L 793
L
Sbjct: 65 L 65
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 112 IQSLEFLDLSHNLFH-GLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRA 170
+ SLE L ++ N F +P L+NL L++S E P+ F L L+ L++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 171 NRF 173
N F
Sbjct: 209 NNF 211
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 112 IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEG--TFPSGFGGLGKLKYLDLR 169
+++L FLDLS L P+ SL +L +LN+S N+F TFP + L L+ LD
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYS 231
Query: 170 ANR 172
N
Sbjct: 232 LNH 234
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 82
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 83 CTREPPFYIITEFMTYGNLLDYLR 106
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNLVS 792
E IG +G +YKA + G A+K++R EGI RE+ L +KH N+V
Sbjct: 8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT---IREISILKELKHSNIVK 64
Query: 793 L 793
L
Sbjct: 65 L 65
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 30 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 86
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ Y+ SL +L+
Sbjct: 87 TKSKPVMIVTEYMENGSLDSFLR 109
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 59 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 115
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ Y+ SL +L+
Sbjct: 116 TKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 59 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 115
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ Y+ SL +L+
Sbjct: 116 TKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 19 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 74
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 75 VSEEPIYIVTEYMSKGSLLDFLKGE 99
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVC- 83
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 84 -TREPPFYIITEFMTYGNLLDYLR 106
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVC- 78
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 79 -TREPPFYIITEFMTYGNLLDYLR 101
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 25 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVC- 82
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 83 -TREPPFYIITEFMTYGNLLDYLR 105
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVC- 78
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 79 -TREPPFYIITEFMTYGNLLDYLR 101
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 369 MVPNQTSQFLRLTSFKVSNN--------SLEGDLPAVLGTY-----PELKVIDLSLNHLN 415
+VPN T Q + L +K+ +N L + LG+Y PEL+V+DLS +
Sbjct: 8 VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 67
Query: 416 GFLLPSFFTSTKLTDLNLSGN--------NFSGPLPLQE-IQNNPSTGSTQNL------S 460
++ + + L+ L L+GN FSG LQ+ + + S +N +
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKT 127
Query: 461 LTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLSNNKFEG 497
L L++A+N + LP S NL +L+LS+NK +
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 402 PELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSG---------PLPLQEIQN--- 449
P LKV+ ++ H F LT L+LS N G P IQN
Sbjct: 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204
Query: 450 -----NPSTGSTQNLSLT-----SLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEG-- 497
TG L+ SLDL++NSL + P + LN N F G
Sbjct: 205 RNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264
Query: 498 SIPDGLPNGLKEFNVSFNNL 517
+P GLP L+ ++S N L
Sbjct: 265 QVPKGLPAKLRVLDLSSNRL 284
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 79
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 80 CTREPPFYIITEFMTYGNLLDYLR 103
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 78
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 79 CTREPPFYIITEFMTYGNLLDYLR 102
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 57 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 113
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ Y+ SL +L+
Sbjct: 114 TKSKPVMIVTEYMENGSLDSFLR 136
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 77
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 78 CTREPPFYIITEFMTYGNLLDYLR 101
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 79
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 80 CTREPPFYIITEFMTYGNLLDYLR 103
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 34 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 90
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 91 CTREPPFYIITEFMTYGNLLDYLR 114
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 82
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 83 CTREPPFYIITEFMTYGNLLDYLR 106
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 59 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 115
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ Y+ SL +L+
Sbjct: 116 TKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 79
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 80 CTREPPFYIITEFMTYGNLLDYLR 103
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C+G L + +A+K L+ G + +++F E +G HPN++ L+G
Sbjct: 63 GEVCYGRL-RVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVV-- 119
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
+ ++++ Y+ SL +L+
Sbjct: 120 TRGRLAMIVTEYMENGSLDTFLR 142
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 75
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 76 CTREPPFYIITEFMTYGNLLDYLR 99
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 81
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E ++ Y++ SL +L+G+
Sbjct: 82 VSEEPIYIVCEYMSKGSLLDFLKGE 106
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 82
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 83 CTREPPFYIITEFMTYGNLLDYLR 106
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLG 76
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C+G L + +A+K L+ G + +++F E +G HPN++ L+G
Sbjct: 63 GEVCYGRL-RVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVV-- 119
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
+ ++++ Y+ SL +L+
Sbjct: 120 TRGRLAMIVTEYMENGSLDTFLR 142
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 284
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 285 CTREPPFYIITEFMTYGNLLDYLR 308
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 77
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 78 CTREPPFYIITEFMTYGNLLDYLR 101
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLG 77
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 323
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 324 CTREPPFYIITEFMTYGNLLDYLR 347
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 74 DMGLVGNFSFPTIIGLKMLCNV---SVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIP 130
D + N ++ G++ L NV ++ N+L +I+ + + +L +L L+ N L P
Sbjct: 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSL-P 101
Query: 131 SGIV-SLKNLMLLNISSNSFEGTFPSG-FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
+G+ L NL L + N + + P G F L L YL+L N+ + +L ++
Sbjct: 102 NGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160
Query: 189 HVDLSNNQ 196
+DLS NQ
Sbjct: 161 ELDLSYNQ 168
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Query: 376 QFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSG 435
+ LT ++ N L+ V LK + L N L F T LT LNL+
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 436 NNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKF 495
N ++Q+ P + +LT LDL+YN L K L L L N+
Sbjct: 143 N---------QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 496 EGSIPDGL 503
+ S+PDG+
Sbjct: 194 K-SVPDGV 200
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 21/144 (14%)
Query: 385 VSNNSLEGDLPAVLGTY--PELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPL 442
++NNS D+ +V G P ++ + L N L+ + + T LT L L+GN
Sbjct: 47 IANNS---DIKSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGN------ 95
Query: 443 PLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDG 502
++Q+ P+ + +L L L N L K NL YLNL++N+ + S+P G
Sbjct: 96 ---QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKG 151
Query: 503 LPN---GLKEFNVSFNNLSGVVPE 523
+ + L E ++S+N L +PE
Sbjct: 152 VFDKLTNLTELDLSYNQLQS-LPE 174
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 247
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E ++ Y++ SL +L+G+
Sbjct: 248 VSEEPIYIVGEYMSKGSLLDFLKGE 272
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 225 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV-- 281
Query: 799 GPKEHEKLVISNYINAQSLAVYLQ 822
+E +I+ ++ +L YL+
Sbjct: 282 CTREPPFYIITEFMTYGNLLDYLR 305
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLG 76
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPG-NMSPEAFLQEAQVMKKLRHEKLVQL---YAV 248
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ SL +L+G+
Sbjct: 249 VSEEPIYIVTEYMSKGSLLDFLKGE 273
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172
Q L++S N L S I+SL L +L IS N + S F +L+YLDL N+
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 173 FGGDIMHLLSQLGSVVHVDLSNN 195
H L H+DLS N
Sbjct: 81 LVKISCHPTVNLK---HLDLSFN 100
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 74 DMGLVGNFSFPTIIGLKMLCNV---SVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIP 130
D + N ++ G++ L NV ++ N+L +I+ + + +L +L L+ N L P
Sbjct: 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSL-P 101
Query: 131 SGIV-SLKNLMLLNISSNSFEGTFPSG-FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
+G+ L NL L + N + + P G F L L YL L N+ + +L ++
Sbjct: 102 NGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLT 160
Query: 189 HVDLSNNQ 196
+DL NNQ
Sbjct: 161 RLDLDNNQ 168
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 73 NDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSG 132
N + + N F + LK L V L + D + +L +L L HN L P G
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD--KLTNLTYLYLYHNQLQSL-PKG 151
Query: 133 IV-SLKNLMLLNISSNSFEGTFPSG-FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHV 190
+ L NL L++ +N + + P G F L +LK L L N+ + +L S+ H+
Sbjct: 152 VFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
Query: 191 DLSNN 195
L NN
Sbjct: 211 WLLNN 215
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L K +A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 47 GEVCSGHL-KLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVV-- 103
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++I+ ++ SL +L+
Sbjct: 104 TKSTPVMIITEFMENGSLDSFLR 126
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 15 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 71
Query: 791 VSL 793
V L
Sbjct: 72 VKL 74
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLG 81
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G +G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLG 74
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 67
Query: 791 VSL 793
V L
Sbjct: 68 VKL 70
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 64
Query: 791 VSL 793
V L
Sbjct: 65 VKL 67
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 738 EVIGRSCHGTLYKATLDSGS-----ILAVKRLREGIAKGKK-EFAREVKKLGNIKHPNLV 791
+VIG G +YK L + S +A+K L+ G + ++ +F E +G H N++
Sbjct: 50 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNII 109
Query: 792 SLQGYYWGPKEHEKLVISNYINAQSLAVYLQGK 824
L+G K ++I+ Y+ +L +L+ K
Sbjct: 110 RLEGVI--SKYKPMMIITEYMENGALDKFLREK 140
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 10 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 66
Query: 791 VSL 793
V L
Sbjct: 67 VKL 69
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 64
Query: 791 VSL 793
V L
Sbjct: 65 VKL 67
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 64
Query: 791 VSL 793
V L
Sbjct: 65 VKL 67
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 15 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 71
Query: 791 VSL 793
V L
Sbjct: 72 VKL 74
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 64
Query: 791 VSL 793
V L
Sbjct: 65 VKL 67
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 67
Query: 791 VSL 793
V L
Sbjct: 68 VKL 70
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 10 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 66
Query: 791 VSL 793
V L
Sbjct: 67 VKL 69
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 65
Query: 791 VSL 793
V L
Sbjct: 66 VKL 68
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 67
Query: 791 VSL 793
V L
Sbjct: 68 VKL 70
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 63
Query: 791 VSL 793
V L
Sbjct: 64 VKL 66
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 64
Query: 791 VSL 793
V L
Sbjct: 65 VKL 67
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 10 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 66
Query: 791 VSL 793
V L
Sbjct: 67 VKL 69
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 67
Query: 791 VSL 793
V L
Sbjct: 68 VKL 70
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 64
Query: 791 VSL 793
V L
Sbjct: 65 VKL 67
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 65
Query: 791 VSL 793
V L
Sbjct: 66 VKL 68
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 64
Query: 791 VSL 793
V L
Sbjct: 65 VKL 67
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 63
Query: 791 VSL 793
V L
Sbjct: 64 VKL 66
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 64
Query: 791 VSL 793
V L
Sbjct: 65 VKL 67
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 63
Query: 791 VSL 793
V L
Sbjct: 64 VKL 66
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 65
Query: 791 VSL 793
V L
Sbjct: 66 VKL 68
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 10 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 66
Query: 791 VSL 793
V L
Sbjct: 67 VKL 69
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 65
Query: 791 VSL 793
V L
Sbjct: 66 VKL 68
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 63
Query: 791 VSL 793
V L
Sbjct: 64 VKL 66
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 67
Query: 791 VSL 793
V L
Sbjct: 68 VKL 70
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 64
Query: 791 VSL 793
V L
Sbjct: 65 VKL 67
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 12 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 68
Query: 791 VSL 793
V L
Sbjct: 69 VKL 71
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 65
Query: 791 VSL 793
V L
Sbjct: 66 VKL 68
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 63
Query: 791 VSL 793
V L
Sbjct: 64 VKL 66
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 81
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E +++ Y++ L +L+G+
Sbjct: 82 VSEEPIYIVTEYMSKGCLLDFLKGE 106
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 67
Query: 791 VSL 793
V L
Sbjct: 68 VKL 70
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 740 IGRSCHGTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G +G +Y S+ +AVK L+E + +EF +E + IKHPNLV L G
Sbjct: 40 LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLG 95
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+K++R EG+ RE+ L + HPN+
Sbjct: 12 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA---IREISLLKELNHPNI 68
Query: 791 VSL 793
V L
Sbjct: 69 VKL 71
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 81
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E ++ Y++ SL +L+G+
Sbjct: 82 VSEEPIYIVIEYMSKGSLLDFLKGE 106
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 81
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E ++ Y++ SL +L+G+
Sbjct: 82 VSEEPIYIVIEYMSKGSLLDFLKGE 106
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 746 GTLYKATLDSGSI-LAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHE 804
G +Y+ S+ +AVK L+E + +EF +E + IKHPNLV L G +E
Sbjct: 25 GEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV--CTREPP 81
Query: 805 KLVISNYINAQSLAVYLQ 822
+I+ ++ +L YL+
Sbjct: 82 FYIITEFMTYGNLLDYLR 99
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L K +A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 21 GEVCSGHL-KLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVV-- 77
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++I+ ++ SL +L+
Sbjct: 78 TKSTPVMIITEFMENGSLDSFLR 100
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 369 MVPNQTSQFLRLTSFKVSNN--------SLEGDLPAVLGTY-----PELKVIDLSLNHLN 415
+VPN T Q L +K+ +N L + LG+Y PEL+V+DLS +
Sbjct: 7 VVPNITYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 66
Query: 416 GFLLPSFFTSTKLTDLNLSGN--------NFSGPLPLQE-IQNNPSTGSTQNL------S 460
++ + + L+ L L+GN FSG LQ+ + + S +N +
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 126
Query: 461 LTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLSNNKFEG 497
L L++A+N + LP S NL +L+LS+NK +
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 109/272 (40%), Gaps = 25/272 (9%)
Query: 92 LCNVSVSNNQLMGN-ITDIGS-----IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNIS 145
LC++SV + L + +D+ S ++ LDL+ +GL PSGI + +L L ++
Sbjct: 250 LCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGL-PSGIEGMNSLKKLVLN 308
Query: 146 SNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI-MHLLSQLGSVVHVDLSNNQXXXXXXXX 204
+NSF+ L+ L ++ N D+ L +L ++ +DLS++
Sbjct: 309 ANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSD-IEASDCC 367
Query: 205 XXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS--FNFVFS 262
QYLN+S N +G LE+ D + HL P F +
Sbjct: 368 NLQLKNLRHLQYLNLSYNEPLG--LEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHL 425
Query: 263 LRILRLG------SNQ--LSGSLPVAXXXXXXXXXXXXXXXXNQLEGPVGSITSATLKKV 314
LR+L L SNQ L+G + L VGS+ L
Sbjct: 426 LRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSC 485
Query: 315 NLSSNKLSGSLPAR-VGHCTIVDLSNNRLSGD 345
NL S R V H +DLS+N L+GD
Sbjct: 486 NLLSIDQQAFHGLRNVNH---LDLSHNSLTGD 514
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLM-------LLNIS 145
C + SN L+ +Q L L+L N F G +S NL+ +L +S
Sbjct: 434 CLLDTSNQHLLA------GLQDLRHLNLQGNSFQ----DGSISKTNLLQMVGSLEILILS 483
Query: 146 SNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNN 195
S + F GL + +LDL N GD M LS L + SNN
Sbjct: 484 SCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNN 533
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 759 LAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSL 817
+A+K L+ G K +++F E +G HPN++ L+G K ++++ Y+ SL
Sbjct: 53 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIHLEGVV--TKSKPVMIVTEYMENGSL 110
Query: 818 AVYLQ 822
+L+
Sbjct: 111 DTFLK 115
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 123/284 (43%), Gaps = 58/284 (20%)
Query: 297 NQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYV 356
NQLE S+ LK +++ +N L LP + NN+L +L +QN ++
Sbjct: 141 NQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLE-ELPELQNLP-FL 197
Query: 357 EDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAV---------------LGTY 401
I+ +N L + L L S NN LE +LP + L T
Sbjct: 198 TAIYADNNSLKKL----PDLPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTL 252
Query: 402 PELKVIDLSLNHLNGFL--LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL 459
P+L +LN + +L LP S LT L++S N FSG L E+ N
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPELPQS--LTFLDVSENIFSG---LSELPPN--------- 298
Query: 460 SLTSLDLAYNSLSG--RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNL 517
L L+ + N + L P + + LN+SNNK +P LP L+ SFN+L
Sbjct: 299 -LYYLNASSNEIRSLCDLPPSLEE------LNVSNNKL-IELP-ALPPRLERLIASFNHL 349
Query: 518 SGV--VPENLRNFPDSAFHPGNSLLTFPNSPSQQDVPDLTLRGH 559
+ V +P+NL+ ++P L FP+ P + V DL + H
Sbjct: 350 AEVPELPQNLKQL-HVEYNP---LREFPDIP--ESVEDLRMNSH 387
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 106 ITDIGSI-QSLEFLDLSHNLFHGL--IPSGIVSLKNLMLLNISSNSFEG--TFPSGFGGL 160
+TD+ + QSL FLD+S N+F GL +P NL LN SSN P L
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLSELPP------NLYYLNASSNEIRSLCDLPPSLEEL 322
Query: 161 G-------KLKYLDLRANRFGGDIMHL 180
+L L R R HL
Sbjct: 323 NVSNNKLIELPALPPRLERLIASFNHL 349
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 738 EVIGRSCHGTLYKATLDS-GSILAVKRLREGIAKG-KKEFAREVKKLGNIKHPNLVSLQG 795
E IGR G ++ L + +++AVK RE + K +F +E + L HPN+V L G
Sbjct: 120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLR----EGIAKGKKEFAREVKKLGNIKHPNLVSL 793
E+IG G +Y+A G +AVK R E I++ + +E K +KHPN+++L
Sbjct: 13 EIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIAL 71
Query: 794 QG 795
+G
Sbjct: 72 RG 73
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 738 EVIGRSCHGTLYKATLDS-GSILAVKRLREGIAKG-KKEFAREVKKLGNIKHPNLVSLQG 795
E IGR G ++ L + +++AVK RE + K +F +E + L HPN+V L G
Sbjct: 120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L Y
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL---YAV 81
Query: 800 PKEHEKLVISNYINAQSLAVYLQGK 824
E ++ Y++ L +L+G+
Sbjct: 82 VSEEPIYIVMEYMSKGCLLDFLKGE 106
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG-FGGLGKLKYLDLRANR 172
+ + L L N L P SL L LN++ N P G F L KL +L L N+
Sbjct: 41 TTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLTKLTHLALHINQ 99
Query: 173 FGGDIMHLLSQLGSVVHVDLSNN 195
M + L S+ H+ L NN
Sbjct: 100 LKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 116 EFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG 175
LDL N L S +L L ++ N P F L L+ L LR+NR
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 176 DIMHLLSQLGSVVHVDLSNNQ 196
+ + + L ++ +D+S N+
Sbjct: 95 IPLGVFTGLSNLTKLDISENK 115
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 739 VIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKG--KKEFAREVKKLGNIKHPNLVSL 793
++G +G + K D+G I+A+K+ E KK RE+K L ++H NLV+L
Sbjct: 32 LVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNL 89
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 59 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 115
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ + SL +L+
Sbjct: 116 TKSKPVMIVTEXMENGSLDSFLR 138
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 86 IIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNIS 145
I L + ++ N L +I ++ +L LDLSHN L P+ + S L
Sbjct: 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFF 301
Query: 146 SNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQ 183
N T P FG L L++L + N + +L++
Sbjct: 302 DNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G G +YK +++ ++ AVK+L + + K++F +E+K + +H NLV L G
Sbjct: 33 MGEGGFGVVYKGYVNNTTV-AVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 91
Query: 796 Y 796
+
Sbjct: 92 F 92
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G G +YK +++ ++ AVK+L + + K++F +E+K + +H NLV L G
Sbjct: 39 MGEGGFGVVYKGYVNNTTV-AVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 796 Y 796
+
Sbjct: 98 F 98
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 740 IGRSCHGTLYKATLDSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G G +YK +++ ++ AVK+L + + K++F +E+K + +H NLV L G
Sbjct: 39 MGEGGFGVVYKGYVNNTTV-AVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 796 Y 796
+
Sbjct: 98 F 98
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 30 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 86
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ + SL +L+
Sbjct: 87 TKSKPVMIVTEXMENGSLDSFLR 109
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+ ++R EG+ RE+ L + HPN+
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTA---IREISLLKELNHPNI 64
Query: 791 VSL 793
V L
Sbjct: 65 VKL 67
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
E IG +G +YKA +G ++A+ ++R EG+ RE+ L + HPN+
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTA---IREISLLKELNHPNI 63
Query: 791 VSL 793
V L
Sbjct: 64 VKL 66
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799
G C G L + S+ A+K L+ G K +++F E +G HPN++ L+G
Sbjct: 59 GEVCSGRLKLPSKKEISV-AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-- 115
Query: 800 PKEHEKLVISNYINAQSLAVYLQ 822
K ++++ + SL +L+
Sbjct: 116 TKSKPVMIVTEXMENGSLDSFLR 138
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 758 ILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
++AVK L++ +K+F RE + L N++H ++V G
Sbjct: 45 LVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYG 82
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 715 AGDLHLFDVSLMFTAEELSHAPAEV--IGRSCHGTLYKAT-LDSGSILAVKRLREGIAKG 771
AG L DV+ +F ++ +++ IG G +Y A + + ++A+K++ +
Sbjct: 35 AGSLKDPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS 94
Query: 772 KKEFA---REVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811
+++ +EV+ L ++HPN + +G Y +EH ++ Y
Sbjct: 95 NEKWQDIIKEVRFLQKLRHPNTIQYRGCYL--REHTAWLVMEY 135
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 114 SLEFLDLSHNLFHGLIPSG--IVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171
SL+ L L N L +G +++LKNL ++IS NSF + P K+KYL+L +
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFH-SMPETCQWPEKMKYLNLSST 420
Query: 172 RF 173
R
Sbjct: 421 RI 422
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 110 GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169
G ++++ LDLS+N + S + NL L ++SN F LG L++LDL
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 170 AN 171
N
Sbjct: 83 YN 84
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 734 HAPAEVIGRSCHGTLYKAT-LDSGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKH 787
+ P IG +GT+YKA SG +A+K +R EG+ +++L +H
Sbjct: 6 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEH 65
Query: 788 PNLVSL 793
PN+V L
Sbjct: 66 PNVVRL 71
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 734 HAPAEVIGRSCHGTLYKAT-LDSGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKH 787
+ P IG +GT+YKA SG +A+K +R EG+ +++L +H
Sbjct: 6 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEH 65
Query: 788 PNLVSL 793
PN+V L
Sbjct: 66 PNVVRL 71
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 734 HAPAEVIGRSCHGTLYKAT-LDSGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKH 787
+ P IG +GT+YKA SG +A+K +R EG+ +++L +H
Sbjct: 6 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEH 65
Query: 788 PNLVSL 793
PN+V L
Sbjct: 66 PNVVRL 71
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 758 ILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
++AVK L++ +K+F RE + L N++H ++V G
Sbjct: 47 LVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYG 84
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 32/192 (16%)
Query: 369 MVPNQTSQFLRLTSF-KVSNNSLEGDL---PAVLGTYPELKVIDLSLNHLNGFLLPS--F 422
+VP SQ L+ F +S N + + A G +P L+ + LS NHL
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Query: 423 FTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKF 482
T LT L++S N F P+ + P NLS T + + +
Sbjct: 384 LTLKNLTSLDISRNTFH---PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP---------- 430
Query: 483 HNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLLTF 542
L L++SNN + S LP L+E +S N L+ PD++ P LL
Sbjct: 431 QTLEVLDVSNNNLD-SFSLFLPR-LQELYISRN--------KLKTLPDASLFP--VLLVM 478
Query: 543 PNSPSQ-QDVPD 553
S +Q + VPD
Sbjct: 479 KISRNQLKSVPD 490
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 32/192 (16%)
Query: 369 MVPNQTSQFLRLTSF-KVSNNSLEGDL---PAVLGTYPELKVIDLSLNHLNGFLLPS--F 422
+VP SQ L+ F +S N + + A G +P L+ + LS NHL
Sbjct: 350 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 409
Query: 423 FTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKF 482
T LT L++S N F P+ + P NLS T + + +
Sbjct: 410 LTLKNLTSLDISRNTFH---PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP---------- 456
Query: 483 HNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLLTF 542
L L++SNN + S LP L+E +S N L+ PD++ P LL
Sbjct: 457 QTLEVLDVSNNNLD-SFSLFLPR-LQELYISRN--------KLKTLPDASLFP--VLLVM 504
Query: 543 PNSPSQ-QDVPD 553
+ +Q + VPD
Sbjct: 505 KIASNQLKSVPD 516
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQG 795
G C G L K +A+K L+ G K +++F E +G HPN+V L+G
Sbjct: 57 GEVCSGRL-KLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEG 111
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 27/120 (22%)
Query: 378 LRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN 437
+ LT K+ +N+L A L YP L +DLS N L + F +L L +S N
Sbjct: 232 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 438 ------FSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSL--SGRLLPGISKFHNLVYLN 489
+ P+P +L LDL++N L R P + NL YL+
Sbjct: 290 LVALNLYGQPIP----------------TLKVLDLSHNHLLHVERNQPQFDRLENL-YLD 332
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 754 DSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVS 792
D+G +A+K+ R+ ++ K ++ + E++ + + HPN+VS
Sbjct: 38 DTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVS 77
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 740 IGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFA---REVKKLGNIKHPNLVSLQG 795
IG G +Y A + + ++A+K++ + +++ +EV+ L ++HPN + +G
Sbjct: 23 IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 82
Query: 796 YYWGPKEHEKLVISNY 811
Y +EH ++ Y
Sbjct: 83 CYL--REHTAWLVMEY 96
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 754 DSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVS 792
D+G +A+K+ R+ ++ K ++ + E++ + + HPN+VS
Sbjct: 37 DTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVS 76
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 103 MGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGK 162
+ N++ I +QS++ LDL+ + P + L NL +L + N P GL
Sbjct: 103 LKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTN 158
Query: 163 LKYLDLRANRF 173
L+YL + N+
Sbjct: 159 LQYLSIGNNQV 169
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 755 SGSILAVKRLREGIAKGKKE-FAREVKKLGNIKHPNLVSLQGYYWGP 800
+G + AVK + + KGK+ E+ L IKH N+V+L+ Y P
Sbjct: 46 TGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIVALEDIYESP 92
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 740 IGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G G +YKA ++G++ A K + + +++ E++ L HP +V L G Y+
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 78
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 73 NDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMG-NITDIGSIQSLEFLDLSHNLFHGLI-P 130
N + V SF + L +L + +N L G + + LE LDLS N ++ P
Sbjct: 41 NRISYVPAASFQSCRNLTIL---WLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 131 SGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHV 190
+ L +L L++ + P F GL L+YL L+ N + LG++ H+
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 191 DLSNNQ 196
L N+
Sbjct: 158 FLHGNR 163
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 110 GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169
G ++++ LDLS+N + S + NL L ++SN F LG L++LDL
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 170 AN 171
N
Sbjct: 109 YN 110
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKE-----FAREVKKLGNIKHPNLV 791
+ +G T+YKA ++ I+A+K+++ G K+ RE+K L + HPN++
Sbjct: 16 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 75
Query: 792 SL 793
L
Sbjct: 76 GL 77
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147
GL +C S+ NN + G + + S E D + + L P I + KN L+ +
Sbjct: 150 GLIYVCGGSLGNN-VSGRV-----LNSCEVYDPATETWTELCPM-IEARKNHGLVFVKDK 202
Query: 148 SFEGTFPSGFGGLGKLKYLDLRANRF-------GGDIMHLLSQLGSVVHV 190
F +G GGL ++Y D++ N + + + +GS+V+V
Sbjct: 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYV 252
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A +S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 16 LGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 796 YY 797
Y+
Sbjct: 76 YF 77
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 740 IGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798
+G G +YKA ++G++ A K + + +++ E++ L HP +V L G Y+
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 86
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 396 AVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGS 455
+ G P L ++L N L G +F ++ + +L L N ++EI N G
Sbjct: 48 GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK------IKEISNKMFLGL 101
Query: 456 TQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKF 495
Q L +L+L N +S + ++L LNL++N F
Sbjct: 102 HQ---LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 126 HGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLG 185
H +P+GI + N +L + N P F L LK L L +N+ G + + L
Sbjct: 31 HASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88
Query: 186 SVVHVDLSNNQ 196
+ +DL NQ
Sbjct: 89 QLTVLDLGTNQ 99
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 407 IDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLS----LT 462
I+LS N ++ F F T + L+ +NL GN L EI N +N LT
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLXGNX------LTEIPKNSLKDENENFKNTYLLT 491
Query: 463 SLDLAYNSLS 472
S+DL +N L+
Sbjct: 492 SIDLRFNKLT 501
>pdb|1PGV|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Tropomodulin C-Terminal Domain
Length = 197
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 307 TSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVE 357
TS +L+ +N+ SN L+ L AR+ T+V S D R GN VE
Sbjct: 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 769 AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKL-VISNY---------INAQSLA 818
+K ++E REV L N+KHPN+V + + +E+ L ++ +Y INAQ
Sbjct: 64 SKEREESRREVAVLANMKHPNIVQYRESF---EENGSLYIVMDYCEGGDLFKRINAQK-G 119
Query: 819 VYLQGKGLVLWF 830
V Q ++ WF
Sbjct: 120 VLFQEDQILDWF 131
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 100 NQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGG 159
NQ ++ + + L +DLS+N L ++ L+ L +S N P F G
Sbjct: 41 NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100
Query: 160 LGKLKYLDLRAN 171
L L+ L L N
Sbjct: 101 LKSLRLLSLHGN 112
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 26/116 (22%)
Query: 378 LRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN 437
+ LT K+ +N+L A L YP L +DLS N L + F +L L +S N
Sbjct: 226 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 438 ------FSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSL--SGRLLPGISKFHNL 485
+ P+P +L LDL++N L R P + NL
Sbjct: 284 LVALNLYGQPIP----------------TLKVLDLSHNHLLHVERNQPQFDRLENL 323
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 112 IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171
+ L+ L L+ N + L NL L++S+N + F LGKL+ + L N
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 172 RFGGDIMHLL 181
+F +L
Sbjct: 190 QFDCSRCEIL 199
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 741 GRSCHGTLYKATLDSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQGY 796
G G +YK +++ ++ AVK+L + + K++F +E+K +H NLV L G+
Sbjct: 31 GEGGFGVVYKGYVNNTTV-AVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGF 89
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 112 IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171
+ L+ L L+ N + L NL L++S+N + F LGKL+ + L N
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 172 RF 173
+F
Sbjct: 190 QF 191
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRL-REGIAKG--KKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + + K + + REV+ +++HPN++ L G
Sbjct: 20 LGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 796 YY 797
Y+
Sbjct: 80 YF 81
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRL-REGIAKG--KKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + + K + + REV+ +++HPN++ L G
Sbjct: 20 LGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 796 YY 797
Y+
Sbjct: 80 YF 81
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 103 MGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGK 162
+ N++ I +QS++ LDL+ + P + L NL +L + N P GL
Sbjct: 97 LKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTN 152
Query: 163 LKYLDL 168
L+YL +
Sbjct: 153 LQYLSI 158
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 796 YY 797
Y+
Sbjct: 76 YF 77
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 20 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 796 YY 797
Y+
Sbjct: 80 YF 81
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 796 YY 797
Y+
Sbjct: 79 YF 80
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 796 YY 797
Y+
Sbjct: 79 YF 80
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 15 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 74
Query: 796 YY 797
Y+
Sbjct: 75 YF 76
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 796 YY 797
Y+
Sbjct: 76 YF 77
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 796 YY 797
Y+
Sbjct: 76 YF 77
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 796 YY 797
Y+
Sbjct: 79 YF 80
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 796 YY 797
Y+
Sbjct: 79 YF 80
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L G
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 796 YY 797
Y+
Sbjct: 76 YF 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,258,687
Number of Sequences: 62578
Number of extensions: 950383
Number of successful extensions: 2980
Number of sequences better than 100.0: 312
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 2270
Number of HSP's gapped (non-prelim): 612
length of query: 832
length of database: 14,973,337
effective HSP length: 107
effective length of query: 725
effective length of database: 8,277,491
effective search space: 6001180975
effective search space used: 6001180975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)