Query 003307
Match_columns 832
No_of_seqs 948 out of 6230
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 20:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.8E-64 2E-68 603.1 42.2 520 13-548 6-748 (768)
2 4ecn_A Leucine-rich repeat pro 100.0 3.5E-53 1.2E-57 505.1 33.8 465 15-525 265-847 (876)
3 4eco_A Uncharacterized protein 100.0 1.1E-51 3.9E-56 484.9 34.0 464 15-522 26-604 (636)
4 3rgz_A Protein brassinosteroid 100.0 1.1E-51 3.9E-56 496.3 33.0 439 66-519 201-742 (768)
5 3t6q_A CD180 antigen; protein- 100.0 1E-48 3.5E-53 459.9 39.5 457 65-541 33-561 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-47 1.5E-51 446.1 39.4 445 65-529 32-544 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 8.7E-47 3E-51 449.6 39.9 473 65-542 25-624 (680)
8 3t6q_A CD180 antigen; protein- 100.0 6.2E-47 2.1E-51 444.7 37.8 426 90-531 33-526 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-47 4.7E-52 465.5 31.8 474 54-541 13-561 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 1.9E-45 6.5E-50 429.0 38.4 441 64-523 27-536 (570)
11 1ziw_A TOLL-like receptor 3; i 100.0 1E-44 3.4E-49 431.8 41.6 441 66-522 50-626 (680)
12 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-45 5.5E-50 432.7 32.7 440 69-530 15-522 (606)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-44 4.7E-49 439.2 33.6 436 65-522 48-564 (844)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-45 1.1E-49 424.9 25.4 440 66-529 27-497 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1E-43 3.5E-48 414.3 34.7 437 70-530 12-519 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-43 3.6E-48 409.1 27.4 407 90-522 21-485 (520)
17 4eco_A Uncharacterized protein 100.0 7.6E-44 2.6E-48 418.4 25.6 448 18-525 26-585 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-42 7.9E-47 400.9 30.9 435 54-523 3-468 (549)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-42 1.6E-46 398.7 28.2 421 68-520 34-512 (562)
20 3v47_A TOLL-like receptor 5B a 100.0 3.9E-41 1.3E-45 381.0 28.3 367 90-500 30-412 (455)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-41 5.4E-46 391.0 25.4 411 65-500 21-485 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 7E-40 2.4E-44 387.1 38.5 458 65-541 52-581 (635)
23 4ecn_A Leucine-rich repeat pro 100.0 3E-41 1E-45 402.4 25.4 372 99-496 434-864 (876)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-39 4.4E-44 384.8 34.5 441 69-530 35-543 (635)
25 1jl5_A Outer protein YOPM; leu 100.0 2.1E-39 7.1E-44 364.1 29.1 392 65-528 11-421 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 7.7E-39 2.6E-43 362.2 31.2 387 93-523 13-413 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-39 3.8E-44 378.9 24.0 413 64-501 51-515 (562)
28 3bz5_A Internalin-J, INLJ; leu 100.0 5.8E-38 2E-42 352.6 28.4 361 83-526 35-395 (457)
29 1ogq_A PGIP-2, polygalacturona 100.0 5.5E-39 1.9E-43 343.5 18.9 290 16-320 3-302 (313)
30 1jl5_A Outer protein YOPM; leu 100.0 5E-38 1.7E-42 352.8 27.2 373 87-529 8-399 (454)
31 1o6v_A Internalin A; bacterial 100.0 1.2E-36 4E-41 344.8 31.1 346 88-497 44-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 4.9E-36 1.7E-40 337.0 27.1 334 108-520 37-370 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 3.7E-36 1.3E-40 342.2 24.7 302 90-441 32-335 (477)
34 1o6v_A Internalin A; bacterial 100.0 5.6E-35 1.9E-39 331.0 32.2 348 110-520 43-390 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 3.5E-35 1.2E-39 334.1 27.3 330 113-525 32-363 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 5.9E-35 2E-39 323.1 24.2 351 40-474 3-354 (390)
37 3oja_B Anopheles plasmodium-re 100.0 2E-34 6.7E-39 336.5 24.8 312 88-475 49-361 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 2.8E-33 9.6E-38 309.6 25.3 314 110-522 42-356 (390)
39 3oja_B Anopheles plasmodium-re 100.0 7.7E-33 2.6E-37 323.1 29.7 332 111-542 49-382 (597)
40 4fmz_A Internalin; leucine ric 100.0 3E-32 1E-36 296.5 28.1 307 85-438 39-345 (347)
41 4fmz_A Internalin; leucine ric 100.0 1.4E-31 4.7E-36 291.2 28.6 152 108-274 39-190 (347)
42 2ft3_A Biglycan; proteoglycan, 100.0 2.9E-30 1E-34 278.7 26.5 293 114-494 34-331 (332)
43 4fcg_A Uncharacterized protein 100.0 1.8E-31 6.1E-36 286.9 16.1 271 14-300 22-314 (328)
44 1xku_A Decorin; proteoglycan, 100.0 7.1E-30 2.4E-34 275.5 27.6 293 50-437 26-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 3E-30 1E-34 278.6 24.0 266 90-437 54-331 (332)
46 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-31 9.1E-36 283.9 13.7 247 90-437 50-302 (313)
47 1xku_A Decorin; proteoglycan, 100.0 2.8E-29 9.6E-34 270.8 28.3 136 355-494 193-330 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-33 1E-37 317.0 -8.2 386 90-522 3-444 (461)
49 1z7x_W Ribonuclease inhibitor; 100.0 3E-32 1E-36 308.6 -3.5 360 112-520 2-413 (461)
50 2z66_A Variable lymphocyte rec 100.0 1.6E-28 5.6E-33 261.8 16.4 233 50-304 2-240 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 3.1E-28 1E-32 265.2 18.0 260 114-419 53-318 (353)
52 2z80_A TOLL-like receptor 2, v 100.0 9.6E-28 3.3E-32 261.3 21.5 270 122-443 40-318 (353)
53 3zyi_A Leucine-rich repeat-con 99.9 8.1E-27 2.8E-31 262.9 23.2 87 355-441 219-305 (452)
54 3zyj_A Leucine-rich repeat-con 99.9 1.4E-26 4.7E-31 260.0 23.3 229 90-440 64-293 (440)
55 2z66_A Variable lymphocyte rec 99.9 1.9E-26 6.5E-31 245.8 21.8 249 116-441 10-263 (306)
56 3zyi_A Leucine-rich repeat-con 99.9 6.6E-26 2.3E-30 255.4 26.2 61 355-415 243-303 (452)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-26 4.5E-31 244.3 18.8 252 68-330 14-269 (285)
58 3ogk_B Coronatine-insensitive 99.9 4.7E-29 1.6E-33 291.8 -1.3 428 56-503 43-533 (592)
59 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-25 7E-30 257.8 28.9 263 91-445 41-303 (622)
60 4fcg_A Uncharacterized protein 99.9 1E-26 3.4E-31 249.9 16.7 144 113-281 81-225 (328)
61 3zyj_A Leucine-rich repeat-con 99.9 2.2E-25 7.5E-30 250.2 26.9 108 355-473 186-293 (440)
62 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-25 1.2E-29 255.7 29.1 269 113-483 40-308 (622)
63 1ozn_A Reticulon 4 receptor; N 99.9 5.7E-26 1.9E-30 239.4 19.7 255 93-481 14-270 (285)
64 3o53_A Protein LRIM1, AGAP0063 99.9 9.4E-28 3.2E-32 257.0 5.4 265 92-443 12-280 (317)
65 1wwl_A Monocyte differentiatio 99.9 1.9E-27 6.5E-32 254.0 6.5 249 86-368 39-310 (312)
66 3ogk_B Coronatine-insensitive 99.9 2.8E-28 9.6E-33 285.2 -4.7 400 108-520 68-528 (592)
67 2o6q_A Variable lymphocyte rec 99.9 1.6E-24 5.5E-29 226.2 22.4 216 51-277 3-221 (270)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-26 4.2E-31 248.3 5.2 155 355-522 121-280 (317)
69 1wwl_A Monocyte differentiatio 99.9 1.1E-26 3.8E-31 248.0 4.7 254 110-440 40-310 (312)
70 3oja_A Leucine-rich immune mol 99.9 9.7E-26 3.3E-30 255.5 10.0 237 111-434 32-270 (487)
71 3oja_A Leucine-rich immune mol 99.9 2.5E-25 8.5E-30 252.1 11.6 215 238-496 34-250 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 1.7E-24 5.6E-29 227.1 16.1 205 90-301 28-238 (276)
73 4glp_A Monocyte differentiatio 99.9 1.2E-23 4.2E-28 224.3 12.2 206 114-323 65-286 (310)
74 2p1m_B Transport inhibitor res 99.9 3.7E-26 1.3E-30 267.3 -8.0 421 56-518 36-519 (594)
75 2p1m_B Transport inhibitor res 99.9 3.2E-26 1.1E-30 267.9 -8.7 401 65-496 66-519 (594)
76 2z62_A TOLL-like receptor 4, v 99.9 1.2E-22 4.2E-27 212.7 19.5 210 65-278 28-241 (276)
77 3rfs_A Internalin B, repeat mo 99.9 7.3E-23 2.5E-27 213.8 17.5 210 85-333 36-246 (272)
78 3rfs_A Internalin B, repeat mo 99.9 2.9E-23 1E-27 216.8 14.4 162 355-530 86-247 (272)
79 2o6q_A Variable lymphocyte rec 99.9 6E-22 2.1E-26 206.7 23.8 203 90-301 16-219 (270)
80 1p9a_G Platelet glycoprotein I 99.9 9.5E-22 3.2E-26 207.0 22.3 203 85-300 5-208 (290)
81 2xwt_C Thyrotropin receptor; s 99.9 3.6E-22 1.2E-26 204.3 14.9 195 90-297 31-236 (239)
82 2o6s_A Variable lymphocyte rec 99.9 3.4E-22 1.2E-26 199.9 13.7 180 50-255 2-182 (208)
83 2ast_B S-phase kinase-associat 99.9 6.9E-24 2.4E-28 229.2 1.3 265 55-331 37-315 (336)
84 3goz_A Leucine-rich repeat-con 99.9 1.2E-23 4E-28 229.7 2.9 82 117-198 2-93 (362)
85 3m19_A Variable lymphocyte rec 99.9 1.5E-21 5.2E-26 201.3 17.3 187 56-276 6-194 (251)
86 1p9a_G Platelet glycoprotein I 99.9 5.2E-21 1.8E-25 201.4 21.3 132 355-497 78-209 (290)
87 4glp_A Monocyte differentiatio 99.9 6.6E-22 2.3E-26 210.8 14.1 229 65-301 64-308 (310)
88 2xwt_C Thyrotropin receptor; s 99.9 9E-22 3.1E-26 201.4 14.1 198 113-318 31-235 (239)
89 3m19_A Variable lymphocyte rec 99.9 1.1E-20 3.8E-25 194.7 20.9 180 90-302 14-194 (251)
90 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4.1E-27 221.6 4.3 107 94-200 2-124 (362)
91 1h6u_A Internalin H; cell adhe 99.8 1.7E-20 5.7E-25 199.5 17.8 194 86-322 37-230 (308)
92 2ca6_A RAN GTPase-activating p 99.8 5.2E-23 1.8E-27 226.8 -3.1 91 108-198 27-135 (386)
93 2ca6_A RAN GTPase-activating p 99.8 1.6E-22 5.4E-27 222.9 0.6 238 84-323 26-317 (386)
94 4ay9_X Follicle-stimulating ho 99.8 1.5E-20 5.2E-25 203.9 15.9 222 52-297 6-233 (350)
95 1h6u_A Internalin H; cell adhe 99.8 3.5E-20 1.2E-24 197.0 18.0 194 65-279 41-234 (308)
96 3cvr_A Invasion plasmid antige 99.8 1.7E-20 5.9E-25 213.9 14.3 207 40-281 33-250 (571)
97 2ast_B S-phase kinase-associat 99.8 1.7E-21 5.6E-26 210.5 4.3 81 115-199 49-132 (336)
98 2v9t_B SLIT homolog 2 protein 99.8 1E-19 3.4E-24 183.2 13.8 159 50-225 6-165 (220)
99 2o6s_A Variable lymphocyte rec 99.8 1.7E-19 5.9E-24 180.1 14.8 180 334-530 11-190 (208)
100 4ay9_X Follicle-stimulating ho 99.8 9E-19 3.1E-23 189.8 19.4 218 93-320 12-234 (350)
101 3e6j_A Variable lymphocyte rec 99.8 3.9E-19 1.3E-23 180.2 15.2 155 52-224 16-171 (229)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 4.7E-19 1.6E-23 178.3 14.2 162 50-228 6-169 (220)
103 3cvr_A Invasion plasmid antige 99.8 1E-18 3.5E-23 199.3 18.2 192 288-504 60-251 (571)
104 2xot_A Amphoterin-induced prot 99.8 1.5E-19 5E-24 196.9 10.0 161 90-276 39-204 (361)
105 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.6E-23 182.4 15.0 173 85-274 41-213 (291)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 7.1E-18 2.4E-22 169.7 17.5 152 93-251 14-166 (220)
107 2v9t_B SLIT homolog 2 protein 99.8 6.7E-18 2.3E-22 169.9 17.3 152 93-251 14-165 (220)
108 1m9s_A Internalin B; cell inva 99.8 2.8E-18 9.4E-23 198.0 15.0 174 85-275 38-211 (605)
109 1m9s_A Internalin B; cell inva 99.8 8.2E-18 2.8E-22 194.1 17.4 166 92-274 23-188 (605)
110 3e6j_A Variable lymphocyte rec 99.7 2.5E-17 8.5E-22 166.9 17.7 151 93-251 22-172 (229)
111 1h6t_A Internalin B; cell adhe 99.7 6.6E-18 2.3E-22 177.8 13.1 166 92-274 26-191 (291)
112 2xot_A Amphoterin-induced prot 99.7 1.2E-17 4.1E-22 181.8 14.8 180 312-498 21-204 (361)
113 1w8a_A SLIT protein; signaling 99.7 6.8E-18 2.3E-22 165.9 10.2 138 50-201 3-142 (192)
114 4b8c_D Glucose-repressible alc 99.7 8.5E-19 2.9E-23 207.6 3.1 203 18-255 131-333 (727)
115 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.4E-22 163.6 11.4 153 86-250 40-193 (197)
116 2o6r_A Variable lymphocyte rec 99.7 2.3E-17 7.8E-22 160.0 11.4 138 50-201 2-140 (177)
117 1xeu_A Internalin C; cellular 99.7 8.2E-18 2.8E-22 174.2 7.2 165 92-274 21-185 (263)
118 1w8a_A SLIT protein; signaling 99.7 7.3E-17 2.5E-21 158.5 11.0 161 357-529 11-173 (192)
119 1dce_A Protein (RAB geranylger 99.7 5.6E-19 1.9E-23 202.7 -5.1 204 235-490 346-567 (567)
120 4asz_A BDNF/NT-3 growth factor 99.7 1E-16 3.4E-21 168.1 11.7 86 737-824 18-109 (299)
121 1dce_A Protein (RAB geranylger 99.7 3.5E-19 1.2E-23 204.3 -7.7 63 134-197 346-422 (567)
122 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.9E-21 164.8 12.7 164 70-253 24-187 (263)
123 4aoj_A High affinity nerve gro 99.7 1.6E-16 5.4E-21 169.0 12.3 86 737-824 46-137 (329)
124 2wfh_A SLIT homolog 2 protein 99.7 1.2E-16 4.1E-21 157.0 10.4 109 90-198 31-139 (193)
125 4ezg_A Putative uncharacterize 99.7 5.9E-16 2E-20 152.8 13.6 152 259-439 42-194 (197)
126 4gt4_A Tyrosine-protein kinase 99.6 5.8E-16 2E-20 163.0 10.9 86 737-824 31-123 (308)
127 4b8c_D Glucose-repressible alc 99.6 5.3E-17 1.8E-21 192.2 1.1 117 84-203 218-334 (727)
128 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.2E-20 146.3 10.5 86 112-199 23-109 (168)
129 2ell_A Acidic leucine-rich nuc 99.6 4.8E-15 1.6E-19 142.2 12.1 136 354-501 24-164 (168)
130 2je0_A Acidic leucine-rich nuc 99.6 6.4E-16 2.2E-20 145.1 5.8 108 90-199 17-127 (149)
131 2wfh_A SLIT homolog 2 protein 99.6 1.3E-14 4.6E-19 142.3 15.0 126 94-225 14-139 (193)
132 3sb4_A Hypothetical leucine ri 99.6 9.8E-16 3.4E-20 164.4 7.3 96 335-432 231-327 (329)
133 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 139.7 14.9 106 92-199 9-114 (177)
134 2je0_A Acidic leucine-rich nuc 99.6 6.6E-15 2.2E-19 138.1 11.0 128 354-492 17-149 (149)
135 3omv_A RAF proto-oncogene seri 99.6 6.1E-15 2.1E-19 154.5 9.8 89 737-830 41-132 (307)
136 3fpq_A Serine/threonine-protei 99.5 8.7E-15 3E-19 152.2 10.3 94 737-830 31-129 (290)
137 3sb4_A Hypothetical leucine ri 99.5 1.2E-14 4.1E-19 155.9 11.2 269 89-439 24-310 (329)
138 4b9d_A Serine/threonine-protei 99.5 1.5E-14 5.2E-19 153.8 11.2 87 737-825 29-118 (350)
139 3hmm_A TGF-beta receptor type- 99.5 1.2E-14 4.3E-19 153.1 9.4 91 737-830 8-100 (303)
140 4aw0_A HPDK1, 3-phosphoinositi 99.5 1E-14 3.6E-19 152.3 8.7 92 737-830 37-132 (311)
141 4fih_A Serine/threonine-protei 99.5 8.5E-15 2.9E-19 155.4 8.1 91 737-830 79-170 (346)
142 1a9n_A U2A', U2A'; complex (nu 99.5 5.5E-15 1.9E-19 142.9 5.8 112 84-198 13-126 (176)
143 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 132.9 12.7 86 113-198 30-115 (170)
144 3g39_A Variable lymphocyte rec 99.5 3.9E-14 1.3E-18 135.9 9.6 115 50-178 4-119 (170)
145 4fie_A Serine/threonine-protei 99.5 2.8E-14 9.7E-19 155.3 9.2 90 737-829 156-246 (423)
146 4g3f_A NF-kappa-beta-inducing 99.5 2.6E-14 9E-19 151.2 8.2 87 737-830 63-150 (336)
147 4fdw_A Leucine rich hypothetic 99.5 3.4E-12 1.2E-16 139.8 24.7 267 90-438 113-382 (401)
148 1a9n_A U2A', U2A'; complex (nu 99.5 4.4E-14 1.5E-18 136.6 8.4 136 107-274 13-153 (176)
149 2r9u_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 131.1 12.7 86 113-198 33-118 (174)
150 4g31_A Eukaryotic translation 99.5 1.7E-13 5.7E-18 143.8 11.6 92 737-828 10-113 (299)
151 4fs7_A Uncharacterized protein 99.5 6.9E-12 2.4E-16 137.9 24.7 310 84-436 65-376 (394)
152 3hyh_A Carbon catabolite-derep 99.5 1.1E-13 3.8E-18 142.5 9.5 91 737-830 18-112 (275)
153 4ase_A Vascular endothelial gr 99.4 1.4E-13 4.8E-18 147.4 9.2 87 737-824 69-163 (353)
154 4fdw_A Leucine rich hypothetic 99.4 6.1E-12 2.1E-16 137.8 21.7 248 83-415 129-383 (401)
155 3ubd_A Ribosomal protein S6 ki 99.4 3.7E-14 1.2E-18 148.2 3.2 92 737-830 29-126 (304)
156 2r9u_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 128.8 10.2 107 68-178 15-122 (174)
157 1ds9_A Outer arm dynein; leuci 99.4 8.2E-16 2.8E-20 151.9 -10.9 108 86-198 14-128 (198)
158 4fs7_A Uncharacterized protein 99.4 3.6E-11 1.2E-15 132.2 23.6 327 108-488 66-393 (394)
159 2ifg_A High affinity nerve gro 99.4 6.9E-13 2.3E-17 143.4 9.0 112 51-176 3-118 (347)
160 1ds9_A Outer arm dynein; leuci 99.4 8E-15 2.7E-19 144.8 -6.3 133 355-501 19-158 (198)
161 4b99_A Mitogen-activated prote 99.3 1.7E-12 5.8E-17 141.6 10.5 93 737-830 59-158 (398)
162 3uto_A Twitchin; kinase, muscl 99.3 3.5E-12 1.2E-16 146.3 11.7 91 737-829 162-254 (573)
163 3s95_A LIMK-1, LIM domain kina 99.3 8.9E-12 3E-16 132.3 12.1 92 737-830 15-108 (310)
164 3v5w_A G-protein coupled recep 99.3 8.1E-12 2.8E-16 142.4 11.4 92 737-830 194-292 (689)
165 2ifg_A High affinity nerve gro 99.3 8.6E-12 2.9E-16 134.7 11.1 103 94-198 12-116 (347)
166 2c30_A Serine/threonine-protei 99.2 1.9E-11 6.6E-16 130.3 11.1 90 737-829 50-140 (321)
167 2yab_A Death-associated protei 99.2 2.4E-11 8.3E-16 131.5 11.7 92 737-830 17-115 (361)
168 2qkw_B Protein kinase; three-h 99.2 7.1E-12 2.4E-16 133.8 7.2 87 737-825 44-130 (321)
169 2qol_A Ephrin receptor; recept 99.2 1.8E-11 6.2E-16 133.4 10.1 92 737-830 50-147 (373)
170 3fe3_A MAP/microtubule affinit 99.2 2.5E-11 8.4E-16 129.7 10.8 91 737-829 20-113 (328)
171 3zgw_A Maternal embryonic leuc 99.2 2.1E-11 7.2E-16 131.1 9.9 92 737-830 15-108 (347)
172 3fxz_A Serine/threonine-protei 99.2 4.1E-11 1.4E-15 126.2 11.0 86 737-824 25-111 (297)
173 2y0a_A Death-associated protei 99.2 4.4E-11 1.5E-15 127.8 11.1 92 737-830 16-114 (326)
174 3f3z_A Calcium/calmodulin-depe 99.2 3.8E-11 1.3E-15 125.1 10.0 92 737-830 14-106 (277)
175 2x4f_A Myosin light chain kina 99.2 3.1E-11 1.1E-15 131.4 9.6 91 737-829 94-186 (373)
176 3ugc_A Tyrosine-protein kinase 99.2 2.6E-11 8.7E-16 127.7 8.6 93 737-829 15-113 (295)
177 4eqm_A Protein kinase; transfe 99.2 5.5E-11 1.9E-15 125.1 11.1 92 737-830 16-111 (294)
178 3kul_A Ephrin type-A receptor 99.2 4.7E-11 1.6E-15 127.6 10.7 91 737-829 54-150 (325)
179 3un9_A NLR family member X1; l 99.2 2.7E-13 9.2E-18 147.1 -7.0 109 90-198 72-196 (372)
180 1o6l_A RAC-beta serine/threoni 99.2 4.1E-11 1.4E-15 128.4 10.1 91 737-829 10-104 (337)
181 4aw2_A Serine/threonine-protei 99.2 2.4E-11 8.3E-16 134.6 8.5 92 737-830 79-175 (437)
182 2bdw_A Hypothetical protein K1 99.2 6.4E-11 2.2E-15 128.4 11.6 92 737-830 34-128 (362)
183 3uim_A Brassinosteroid insensi 99.2 2.4E-11 8.3E-16 129.9 8.0 97 727-825 20-122 (326)
184 4hcu_A Tyrosine-protein kinase 99.2 8E-11 2.7E-15 122.0 11.5 90 737-829 15-105 (269)
185 2ac3_A MAP kinase-interacting 99.2 5.2E-11 1.8E-15 126.7 10.2 91 737-829 18-110 (316)
186 3p86_A Serine/threonine-protei 99.2 6.3E-11 2.2E-15 125.5 10.7 86 737-825 42-129 (309)
187 1fot_A TPK1 delta, CAMP-depend 99.2 5.8E-11 2E-15 126.2 10.4 92 737-830 11-106 (318)
188 3kn6_A Ribosomal protein S6 ki 99.2 8.2E-11 2.8E-15 125.6 11.6 89 737-830 16-106 (325)
189 1kob_A Twitchin; kinase, intra 99.2 8.1E-11 2.8E-15 128.6 11.6 91 737-829 56-148 (387)
190 4fvq_A Tyrosine-protein kinase 99.2 5.3E-11 1.8E-15 124.8 9.7 91 737-829 13-112 (289)
191 2w4o_A Calcium/calmodulin-depe 99.2 4.7E-11 1.6E-15 128.8 9.4 90 737-830 58-148 (349)
192 3kmu_A ILK, integrin-linked ki 99.2 6.1E-11 2.1E-15 122.9 9.9 92 737-829 15-110 (271)
193 4euu_A Serine/threonine-protei 99.2 8.6E-11 2.9E-15 125.2 11.0 89 737-825 14-104 (319)
194 1tki_A Titin; serine kinase, m 99.2 9.3E-11 3.2E-15 124.9 11.2 90 737-829 10-101 (321)
195 4f9c_A Cell division cycle 7-r 99.1 5.4E-11 1.8E-15 128.2 9.1 82 737-822 26-112 (361)
196 3cbl_A C-FES, proto-oncogene t 99.1 4.2E-11 1.4E-15 130.8 8.3 91 737-829 119-212 (377)
197 3a8x_A Protein kinase C IOTA t 99.1 9.5E-11 3.2E-15 126.1 10.9 92 737-830 14-110 (345)
198 3sxs_A Cytoplasmic tyrosine-pr 99.1 7.9E-11 2.7E-15 122.0 10.0 90 737-829 13-103 (268)
199 2nru_A Interleukin-1 receptor- 99.1 1.3E-10 4.3E-15 123.1 11.7 90 738-830 37-133 (307)
200 3a62_A Ribosomal protein S6 ki 99.1 6.3E-11 2.1E-15 126.7 9.4 91 737-829 22-120 (327)
201 2jam_A Calcium/calmodulin-depe 99.1 7.6E-11 2.6E-15 124.7 9.9 91 737-829 14-105 (304)
202 3gen_A Tyrosine-protein kinase 99.1 8.6E-11 2.9E-15 122.8 10.2 90 737-829 29-119 (283)
203 3qd2_B Eukaryotic translation 99.1 1.4E-10 4.7E-15 124.2 12.0 90 737-826 11-157 (332)
204 3uc3_A Serine/threonine-protei 99.1 7.1E-11 2.4E-15 128.0 9.6 91 737-830 25-116 (361)
205 4fr4_A YANK1, serine/threonine 99.1 7.8E-11 2.7E-15 128.3 9.9 92 737-830 20-115 (384)
206 2psq_A Fibroblast growth facto 99.1 8.7E-11 3E-15 127.8 10.1 87 737-825 86-182 (370)
207 2rku_A Serine/threonine-protei 99.1 1.7E-10 5.8E-15 121.3 11.9 92 737-830 20-115 (294)
208 3lxl_A Tyrosine-protein kinase 99.1 1.3E-10 4.6E-15 124.1 11.2 93 737-829 28-126 (327)
209 3tki_A Serine/threonine-protei 99.1 3.9E-11 1.3E-15 128.1 6.9 92 737-830 12-105 (323)
210 2a2a_A Death-associated protei 99.1 1.3E-10 4.5E-15 123.8 11.0 92 737-830 17-115 (321)
211 3bhy_A Death-associated protei 99.1 1.3E-10 4.3E-15 121.5 10.3 92 737-830 10-108 (283)
212 3uqc_A Probable conserved tran 99.1 9.6E-11 3.3E-15 122.6 9.3 85 737-823 36-124 (286)
213 3soa_A Calcium/calmodulin-depe 99.1 9.9E-11 3.4E-15 130.2 9.9 92 737-830 16-110 (444)
214 1k9a_A Carboxyl-terminal SRC k 99.1 1.3E-10 4.6E-15 129.9 11.0 85 737-825 198-282 (450)
215 3txo_A PKC-L, NPKC-ETA, protei 99.1 9.8E-11 3.4E-15 126.3 9.5 92 737-830 28-124 (353)
216 1luf_A Muscle-specific tyrosin 99.1 1.5E-10 5.2E-15 124.6 10.9 86 737-824 52-144 (343)
217 3soc_A Activin receptor type-2 99.1 1.1E-10 3.9E-15 124.4 9.5 91 737-830 29-121 (322)
218 3eqc_A Dual specificity mitoge 99.1 1.2E-10 4.2E-15 126.3 9.9 91 737-829 38-130 (360)
219 1xjd_A Protein kinase C, theta 99.1 8.2E-11 2.8E-15 126.4 8.4 92 737-830 22-118 (345)
220 1rdq_E PKA C-alpha, CAMP-depen 99.1 1.2E-10 4.2E-15 125.5 9.7 91 737-829 46-140 (350)
221 2clq_A Mitogen-activated prote 99.1 1.6E-10 5.4E-15 121.5 10.3 86 737-824 27-113 (295)
222 3un9_A NLR family member X1; l 99.1 1E-11 3.5E-16 134.6 1.1 133 355-496 102-252 (372)
223 3t9t_A Tyrosine-protein kinase 99.1 2E-10 6.9E-15 118.8 10.8 90 737-829 13-103 (267)
224 2vd5_A DMPK protein; serine/th 99.1 9.6E-11 3.3E-15 128.9 8.8 91 737-829 66-161 (412)
225 2j7t_A Serine/threonine-protei 99.1 1.7E-10 5.9E-15 121.7 10.4 91 737-829 24-116 (302)
226 3gni_B Strad alpha; kinase fol 99.1 2.4E-10 8E-15 125.5 11.9 91 737-829 30-127 (389)
227 3kk8_A Calcium/calmodulin depe 99.1 2.2E-10 7.5E-15 119.7 11.1 91 737-829 11-104 (284)
228 4gt6_A Cell surface protein; l 99.1 1.9E-08 6.5E-13 110.3 27.1 77 115-193 66-145 (394)
229 3c0i_A Peripheral plasma membr 99.1 1.3E-10 4.5E-15 125.5 9.6 85 737-823 29-119 (351)
230 2owb_A Serine/threonine-protei 99.1 2.7E-10 9.1E-15 122.3 11.8 92 737-830 46-141 (335)
231 1opk_A P150, C-ABL, proto-onco 99.1 1.1E-10 3.7E-15 132.2 9.1 90 737-829 225-317 (495)
232 4eut_A Serine/threonine-protei 99.1 1.3E-10 4.4E-15 127.8 9.4 89 737-825 14-104 (396)
233 3is5_A Calcium-dependent prote 99.1 1.9E-10 6.5E-15 120.4 10.2 85 737-823 27-113 (285)
234 1qcf_A Haematopoetic cell kina 99.1 1.7E-10 5.8E-15 129.3 10.4 84 737-824 193-276 (454)
235 3v8s_A RHO-associated protein 99.1 7.3E-11 2.5E-15 129.7 7.3 86 737-824 74-163 (410)
236 2y94_A 5'-AMP-activated protei 99.1 1.1E-10 3.8E-15 130.7 8.7 92 737-830 21-116 (476)
237 3q5i_A Protein kinase; CDPK, m 99.1 2E-10 6.8E-15 130.6 10.8 92 737-830 41-146 (504)
238 4dc2_A Protein kinase C IOTA t 99.1 9.8E-11 3.3E-15 128.0 7.9 92 737-830 57-153 (396)
239 3ork_A Serine/threonine protei 99.1 6.4E-11 2.2E-15 125.7 6.3 94 737-830 17-116 (311)
240 2ivs_A Proto-oncogene tyrosine 99.1 2.3E-10 8E-15 121.4 10.6 87 737-825 28-121 (314)
241 3fdn_A Serine/threonine-protei 99.1 1.7E-10 5.9E-15 120.2 9.3 91 737-829 14-108 (279)
242 4fl3_A Tyrosine-protein kinase 99.1 2.1E-10 7E-15 133.6 10.4 91 737-830 374-469 (635)
243 2buj_A Serine/threonine-protei 99.1 2.4E-10 8.1E-15 121.6 10.0 93 737-829 34-133 (317)
244 4gt6_A Cell surface protein; l 99.1 1.8E-08 6.2E-13 110.5 25.4 157 83-250 56-217 (394)
245 4agu_A Cyclin-dependent kinase 99.1 2.5E-10 8.7E-15 121.0 10.1 92 737-830 8-102 (311)
246 3nyv_A Calmodulin-domain prote 99.1 2.9E-10 9.9E-15 128.7 11.1 92 737-830 31-126 (484)
247 1fmk_A C-SRC, P60-SRC, tyrosin 99.1 2.1E-10 7.2E-15 128.4 9.9 83 737-823 189-271 (452)
248 2w1i_A JAK2; chromosomal rearr 99.1 2.6E-10 9.1E-15 121.8 10.2 93 737-829 46-144 (326)
249 1t4h_A Serine/threonine-protei 99.1 3.8E-10 1.3E-14 118.3 11.2 93 737-829 31-128 (290)
250 3lij_A Calcium/calmodulin depe 99.1 2E-10 6.9E-15 130.2 9.8 91 737-829 42-135 (494)
251 1phk_A Phosphorylase kinase; g 99.1 2.6E-10 8.9E-15 120.1 10.0 91 737-829 22-123 (298)
252 2pvf_A Fibroblast growth facto 99.1 2.9E-10 1E-14 121.9 10.4 87 737-825 40-136 (334)
253 2h34_A Serine/threonine-protei 99.1 2.4E-10 8.3E-15 121.1 9.6 92 737-830 39-134 (309)
254 3vhe_A Vascular endothelial gr 99.1 1.9E-10 6.5E-15 124.7 8.9 88 737-825 27-122 (359)
255 3l9p_A Anaplastic lymphoma kin 99.1 1.7E-10 5.7E-15 125.5 8.4 86 737-824 76-168 (367)
256 2h6d_A 5'-AMP-activated protei 99.1 2.7E-10 9.2E-15 118.5 9.7 91 737-829 16-110 (276)
257 3h4j_B AMPK kdaid, SNF1-like p 99.1 1.4E-10 5E-15 124.0 7.8 91 737-830 14-108 (336)
258 2acx_A G protein-coupled recep 99.1 2.5E-10 8.5E-15 129.8 10.0 91 737-829 189-285 (576)
259 2w5a_A Serine/threonine-protei 99.1 2.3E-10 7.7E-15 119.3 9.0 87 737-823 11-100 (279)
260 4e5w_A Tyrosine-protein kinase 99.1 3.7E-10 1.3E-14 119.1 10.7 93 737-829 26-125 (302)
261 3lxp_A Non-receptor tyrosine-p 99.1 4.9E-10 1.7E-14 119.2 11.7 92 737-829 36-133 (318)
262 1x8b_A WEE1HU, WEE1-like prote 99.1 3.4E-10 1.2E-14 118.4 10.3 86 737-824 16-105 (289)
263 3hko_A Calcium/calmodulin-depe 99.1 2E-10 6.9E-15 123.7 8.7 84 737-822 31-120 (345)
264 2eva_A TAK1 kinase - TAB1 chim 99.1 2.6E-10 9E-15 120.7 9.2 83 737-826 13-95 (307)
265 3cok_A Serine/threonine-protei 99.1 2.9E-10 9.9E-15 118.4 9.3 91 737-829 16-111 (278)
266 3tt0_A Basic fibroblast growth 99.1 3.1E-10 1.1E-14 124.1 10.1 87 737-825 74-170 (382)
267 1t46_A HOMO sapiens V-KIT hard 99.0 2.7E-10 9.2E-15 120.9 9.1 87 737-825 28-122 (313)
268 4ejn_A RAC-alpha serine/threon 99.0 1.1E-10 3.7E-15 130.6 6.3 92 737-830 153-248 (446)
269 2qr7_A Ribosomal protein S6 ki 99.0 2.4E-10 8.2E-15 122.8 8.8 88 737-830 27-116 (342)
270 3niz_A Rhodanese family protei 99.0 4.1E-10 1.4E-14 119.4 10.3 90 737-829 26-118 (311)
271 2ozo_A Tyrosine-protein kinase 99.0 4.2E-10 1.5E-14 130.6 11.3 89 739-830 343-436 (613)
272 2i0e_A Protein kinase C-beta I 99.0 2.1E-10 7.3E-15 123.6 8.1 92 737-830 25-121 (353)
273 3mwu_A Calmodulin-domain prote 99.0 2.4E-10 8.3E-15 129.3 8.9 92 737-830 27-121 (486)
274 3kfa_A Tyrosine-protein kinase 99.0 3.2E-10 1.1E-14 118.7 9.2 90 737-829 18-110 (288)
275 2h8h_A Proto-oncogene tyrosine 99.0 2.6E-10 8.9E-15 130.3 9.1 89 737-829 272-362 (535)
276 2vgo_A Serine/threonine-protei 99.0 3E-10 1E-14 118.8 8.8 91 737-829 19-113 (284)
277 3i6u_A CDS1, serine/threonine- 99.0 1.4E-10 4.7E-15 128.5 6.4 91 737-830 140-239 (419)
278 2y7j_A Phosphorylase B kinase 99.0 4.3E-10 1.5E-14 122.1 10.1 92 737-830 99-200 (365)
279 3e7e_A HBUB1, BUB1A, mitotic c 99.0 4.7E-10 1.6E-14 121.9 10.5 89 737-830 70-172 (365)
280 3dtc_A Mitogen-activated prote 99.0 3.5E-10 1.2E-14 117.2 9.0 89 737-829 12-104 (271)
281 2wqm_A Serine/threonine-protei 99.0 7.4E-10 2.5E-14 117.3 11.7 85 737-823 37-125 (310)
282 2wei_A Calmodulin-domain prote 99.0 5.2E-10 1.8E-14 117.1 10.3 91 737-829 27-120 (287)
283 3o0g_A Cell division protein k 99.0 5.5E-10 1.9E-14 117.3 10.4 90 737-829 7-100 (292)
284 2yex_A Serine/threonine-protei 99.0 2.7E-10 9.2E-15 118.5 7.9 91 737-829 12-104 (276)
285 4aaa_A Cyclin-dependent kinase 99.0 4.3E-10 1.5E-14 120.4 9.5 92 737-830 30-124 (331)
286 1qpc_A LCK kinase; alpha beta 99.0 3.9E-10 1.3E-14 117.5 8.9 84 737-824 18-101 (279)
287 1mqb_A Ephrin type-A receptor 99.0 6.5E-10 2.2E-14 119.1 10.5 91 737-829 49-146 (333)
288 1rjb_A FL cytokine receptor; k 99.0 4E-10 1.4E-14 121.4 8.8 87 737-825 50-144 (344)
289 1mp8_A Focal adhesion kinase 1 99.0 7.6E-10 2.6E-14 115.5 10.6 90 737-829 20-115 (281)
290 2r5t_A Serine/threonine-protei 99.0 2.7E-10 9.1E-15 123.8 7.3 91 737-829 43-138 (373)
291 2eue_A Carbon catabolite derep 99.0 7.2E-10 2.5E-14 115.2 10.3 91 737-830 18-112 (275)
292 3gbz_A Kinase, CMGC CDK; ssgci 99.0 4.2E-10 1.4E-14 120.4 8.7 91 737-830 39-132 (329)
293 1p4o_A Insulin-like growth fac 99.0 5.4E-10 1.9E-14 119.1 9.4 85 737-823 30-121 (322)
294 2yfx_A Tyrosine-protein kinase 99.0 5.4E-10 1.8E-14 119.4 9.3 87 737-825 35-128 (327)
295 3pls_A Macrophage-stimulating 99.0 1E-09 3.5E-14 115.5 11.3 92 737-829 26-123 (298)
296 1xbb_A Tyrosine-protein kinase 99.0 7.1E-10 2.4E-14 116.3 10.0 89 739-830 24-117 (291)
297 2zv2_A Calcium/calmodulin-depe 99.0 2.9E-10 9.9E-15 119.8 6.8 86 737-822 18-130 (298)
298 1u59_A Tyrosine-protein kinase 99.0 1E-09 3.5E-14 114.8 11.0 90 737-829 15-109 (287)
299 3poz_A Epidermal growth factor 99.0 8.4E-10 2.9E-14 117.9 10.4 91 737-830 20-117 (327)
300 3gxj_A TGF-beta receptor type- 99.0 7E-10 2.4E-14 117.0 9.7 88 737-829 8-99 (303)
301 1ob3_A PFPK5, cell division co 99.0 6.7E-10 2.3E-14 116.3 9.4 90 737-829 7-99 (288)
302 1u5q_A Serine/threonine protei 99.0 7.5E-10 2.6E-14 119.3 10.0 91 737-830 59-154 (348)
303 2ycf_A Serine/threonine-protei 99.0 5E-10 1.7E-14 119.4 8.5 90 737-829 15-113 (322)
304 3c4z_A Rhodopsin kinase; Ser/T 99.0 7.4E-10 2.5E-14 125.6 10.2 86 737-824 190-279 (543)
305 3qup_A Tyrosine-protein kinase 99.0 5.1E-10 1.7E-14 119.4 8.4 87 737-823 28-124 (323)
306 2pmi_A Negative RE, cyclin-dep 99.0 7.2E-10 2.5E-14 117.9 9.1 84 737-823 10-95 (317)
307 3f66_A Hepatocyte growth facto 99.0 1.2E-09 4E-14 115.0 10.7 92 737-829 30-127 (298)
308 3a7i_A MST3 kinase, serine/thr 99.0 1.2E-09 4.2E-14 115.2 10.9 90 737-829 27-118 (303)
309 1fvr_A Tyrosine-protein kinase 99.0 8.6E-10 3E-14 117.8 9.6 87 737-825 30-121 (327)
310 3n9x_A Phosphotransferase; mal 99.0 9.7E-10 3.3E-14 122.2 10.2 93 737-830 31-129 (432)
311 3dls_A PAS domain-containing s 99.0 3.3E-10 1.1E-14 121.5 6.0 92 737-830 29-130 (335)
312 3dbq_A Dual specificity protei 99.0 9.3E-10 3.2E-14 118.4 9.5 91 737-830 14-108 (343)
313 2pml_X PFPK7, Ser/Thr protein 99.0 1.8E-10 6.3E-15 124.2 3.9 81 737-820 36-133 (348)
314 1zy4_A Serine/threonine-protei 99.0 1.1E-09 3.9E-14 115.3 9.8 88 737-825 11-110 (303)
315 3com_A Serine/threonine-protei 99.0 1.1E-09 3.7E-14 116.3 9.6 89 737-829 34-124 (314)
316 4f0f_A Serine/threonine-protei 99.0 1E-09 3.5E-14 114.8 9.3 89 737-829 24-121 (287)
317 2xir_A Vascular endothelial gr 99.0 9.3E-10 3.2E-14 116.9 9.0 89 737-826 32-128 (316)
318 1vzo_A Ribosomal protein S6 ki 99.0 3E-10 1E-14 122.8 5.2 91 737-829 59-158 (355)
319 2vwi_A Serine/threonine-protei 99.0 4.6E-10 1.6E-14 118.4 6.4 85 737-823 20-106 (303)
320 2i1m_A Macrophage colony-stimu 99.0 1.2E-09 4E-14 117.1 9.6 86 737-824 51-144 (333)
321 3q4u_A Activin receptor type-1 99.0 1.8E-09 6.2E-14 113.7 10.8 88 737-829 13-104 (301)
322 2a19_B Interferon-induced, dou 99.0 7.7E-10 2.6E-14 115.5 7.8 89 737-829 16-121 (284)
323 3c1x_A Hepatocyte growth facto 99.0 8.6E-10 3E-14 119.9 8.4 92 737-829 94-191 (373)
324 3cc6_A Protein tyrosine kinase 98.9 1.7E-09 5.7E-14 112.8 10.0 90 737-829 17-112 (281)
325 3rp9_A Mitogen-activated prote 98.9 1.2E-09 4.1E-14 122.6 9.5 93 737-830 58-156 (458)
326 3brb_A Proto-oncogene tyrosine 98.9 1.6E-09 5.4E-14 115.0 9.7 86 737-822 39-133 (313)
327 2zmd_A Dual specificity protei 98.9 1.5E-09 5E-14 119.0 9.8 90 737-829 61-154 (390)
328 3p1a_A MYT1 kinase, membrane-a 98.9 1.7E-09 5.7E-14 114.7 9.7 91 737-830 62-157 (311)
329 1byg_A CSK, protein (C-termina 98.9 1.7E-09 5.7E-14 112.6 8.9 84 737-824 26-109 (278)
330 2wtk_C Serine/threonine-protei 98.9 2.5E-09 8.6E-14 112.9 10.3 86 737-823 10-100 (305)
331 2i6l_A Mitogen-activated prote 98.9 2E-09 6.8E-14 114.4 9.4 86 737-823 16-114 (320)
332 1nxk_A MAP kinase-activated pr 98.9 1.7E-09 6E-14 118.7 9.1 88 738-830 68-161 (400)
333 2izr_A Casein kinase I isoform 98.9 1.1E-09 3.9E-14 117.1 7.3 89 737-830 14-105 (330)
334 3rgf_A Cyclin-dependent kinase 98.9 2.4E-09 8.2E-14 118.1 9.7 92 728-822 17-111 (405)
335 3kex_A Receptor tyrosine-prote 98.9 9.8E-10 3.4E-14 117.3 6.1 91 737-830 18-115 (325)
336 1b6c_B TGF-B superfamily recep 98.9 4.3E-09 1.5E-13 113.1 11.2 88 737-829 47-138 (342)
337 3m2w_A MAP kinase-activated pr 98.9 3.4E-09 1.2E-13 111.6 10.0 88 737-829 23-116 (299)
338 2x7f_A TRAF2 and NCK-interacti 98.9 2.4E-09 8.2E-14 114.3 8.9 87 737-824 29-121 (326)
339 3lm5_A Serine/threonine-protei 98.9 1.8E-09 6.1E-14 115.4 7.8 91 737-829 34-130 (327)
340 2r3i_A Cell division protein k 98.9 2.9E-09 1E-13 112.0 9.3 85 737-824 8-95 (299)
341 3mtl_A Cell division protein k 98.9 1.2E-09 4E-14 116.6 6.1 90 737-829 7-99 (324)
342 1cm8_A Phosphorylated MAP kina 98.9 2.4E-09 8.3E-14 116.2 8.6 91 737-829 30-127 (367)
343 3ll6_A Cyclin G-associated kin 98.9 2.6E-09 9E-14 114.4 8.6 93 737-830 33-136 (337)
344 3pg1_A Mitogen-activated prote 98.9 2.2E-09 7.5E-14 116.4 7.9 92 737-829 27-133 (362)
345 3an0_A Dual specificity mitoge 98.9 5.6E-09 1.9E-13 112.1 10.9 91 737-830 56-153 (340)
346 3lb7_A RAF proto-oncogene seri 98.9 3.8E-09 1.3E-13 111.7 9.4 88 737-829 41-131 (307)
347 2j0j_A Focal adhesion kinase 1 98.9 4.7E-09 1.6E-13 122.6 10.9 91 737-830 395-491 (656)
348 3pfq_A PKC-B, PKC-beta, protei 98.9 1.9E-09 6.5E-14 126.4 7.5 92 737-830 346-442 (674)
349 3nsz_A CK II alpha, casein kin 98.9 6.2E-09 2.1E-13 111.2 10.9 84 737-823 41-126 (330)
350 3og7_A AKAP9-BRAF fusion prote 98.9 4E-09 1.4E-13 110.5 9.0 88 737-829 29-119 (289)
351 3llt_A Serine/threonine kinase 98.9 6.5E-09 2.2E-13 112.6 10.9 85 737-825 40-130 (360)
352 3oz6_A Mitogen-activated prote 98.9 5.1E-09 1.7E-13 114.7 10.1 87 737-824 14-104 (388)
353 1ua2_A CAK, cell division prot 98.8 3.4E-09 1.1E-13 114.2 8.4 90 737-829 15-111 (346)
354 3byv_A Rhoptry kinase; malaria 98.8 1.2E-09 4.2E-14 119.1 4.8 90 737-827 78-196 (377)
355 3mdy_A Bone morphogenetic prot 98.8 6.4E-09 2.2E-13 111.5 10.3 88 737-829 42-133 (337)
356 3cek_A Dual specificity protei 98.8 4.8E-09 1.6E-13 111.2 9.1 90 737-829 33-126 (313)
357 3fme_A Dual specificity mitoge 98.8 8.2E-09 2.8E-13 108.0 10.7 91 737-830 12-109 (290)
358 2iwi_A Serine/threonine-protei 98.8 1.1E-09 3.7E-14 116.1 3.9 92 737-830 36-139 (312)
359 3lzb_A Epidermal growth factor 98.8 5.9E-09 2E-13 111.3 9.5 90 737-829 20-116 (327)
360 2b9h_A MAP kinase FUS3, mitoge 98.8 7.5E-09 2.6E-13 111.8 10.0 91 737-829 16-111 (353)
361 3aln_A Dual specificity mitoge 98.8 9.7E-09 3.3E-13 109.6 10.8 83 737-822 27-112 (327)
362 3qyz_A Mitogen-activated prote 98.8 8.6E-09 2.9E-13 111.8 10.2 91 737-829 32-127 (364)
363 2pzi_A Probable serine/threoni 98.8 2.3E-09 7.8E-14 126.5 6.0 91 737-829 85-181 (681)
364 3ttj_A Mitogen-activated prote 98.8 6.6E-09 2.2E-13 116.4 9.0 86 737-823 67-159 (464)
365 2vuw_A Serine/threonine-protei 98.8 4E-10 1.4E-14 120.9 -0.9 84 737-823 25-155 (336)
366 1u46_A ACK-1, activated CDC42 98.8 5.4E-09 1.9E-13 109.4 7.6 90 737-829 23-120 (291)
367 3qa8_A MGC80376 protein; kinas 98.8 1.6E-09 5.6E-14 124.5 3.6 87 737-825 19-113 (676)
368 2xrw_A Mitogen-activated prote 98.8 1.2E-08 4E-13 111.1 10.2 86 737-823 30-122 (371)
369 2jii_A Serine/threonine-protei 98.8 3.4E-09 1.2E-13 114.4 5.7 87 737-830 47-159 (352)
370 2rio_A Serine/threonine-protei 98.8 9.9E-09 3.4E-13 114.1 9.4 83 737-825 20-103 (434)
371 1csn_A Casein kinase-1; phosph 98.8 1E-08 3.6E-13 107.6 9.0 88 737-829 15-105 (298)
372 2fst_X Mitogen-activated prote 98.8 5.3E-09 1.8E-13 113.5 6.8 91 737-829 34-131 (367)
373 3g33_A Cell division protein k 98.8 8.1E-09 2.8E-13 109.2 8.0 92 737-829 14-119 (308)
374 3eb0_A Putative uncharacterize 98.8 8.3E-09 2.9E-13 112.8 8.3 88 737-829 12-140 (383)
375 2v62_A Serine/threonine-protei 98.8 2.9E-09 1E-13 114.6 4.4 93 737-830 42-151 (345)
376 3fhr_A MAP kinase-activated pr 98.8 1.4E-08 4.9E-13 108.7 9.7 89 737-829 34-127 (336)
377 3op5_A Serine/threonine-protei 98.8 7.3E-09 2.5E-13 112.4 7.5 93 737-830 40-152 (364)
378 3mi9_A Cell division protein k 98.8 8.3E-09 2.8E-13 111.3 7.8 92 737-829 22-123 (351)
379 3rw6_A Nuclear RNA export fact 98.8 4.5E-11 1.5E-15 121.6 -9.5 143 55-201 78-236 (267)
380 2ra8_A Uncharacterized protein 98.8 5.5E-09 1.9E-13 112.2 6.0 143 129-274 164-320 (362)
381 2y4i_B KSR2, HKSR2, kinase sup 98.7 2.2E-09 7.4E-14 114.2 2.7 89 737-829 38-129 (319)
382 4exu_A Mitogen-activated prote 98.7 1.3E-08 4.5E-13 110.6 8.8 86 737-823 47-139 (371)
383 3g2f_A Bone morphogenetic prot 98.7 2E-08 6.8E-13 107.6 9.8 85 737-825 18-107 (336)
384 1blx_A Cyclin-dependent kinase 98.7 1.1E-08 3.9E-13 108.9 7.3 92 737-829 16-119 (326)
385 3p23_A Serine/threonine-protei 98.7 1.9E-08 6.5E-13 111.5 8.2 83 737-825 29-112 (432)
386 3coi_A Mitogen-activated prote 98.7 1.4E-08 4.7E-13 109.7 6.9 85 737-822 29-120 (353)
387 3kvw_A DYRK2, dual specificity 98.7 3.8E-08 1.3E-12 109.1 9.9 90 737-830 102-200 (429)
388 1j1b_A Glycogen synthase kinas 98.7 2.8E-08 9.4E-13 110.0 8.4 81 737-822 59-144 (420)
389 3uzp_A CKI-delta, CKID, casein 98.7 3.5E-08 1.2E-12 103.5 8.7 89 737-829 14-104 (296)
390 4h09_A Hypothetical leucine ri 98.7 2.5E-06 8.7E-11 92.8 23.5 81 353-435 262-342 (379)
391 2ra8_A Uncharacterized protein 98.6 3.3E-09 1.1E-13 113.9 0.2 202 64-272 106-341 (362)
392 3en9_A Glycoprotease, O-sialog 98.6 2E-08 7E-13 114.3 6.7 84 737-823 341-432 (540)
393 3a99_A Proto-oncogene serine/t 98.6 9.6E-09 3.3E-13 109.2 3.7 91 737-829 48-148 (320)
394 3q60_A ROP5B; pseudokinase, tr 98.6 4.9E-08 1.7E-12 106.1 9.3 86 737-824 67-181 (371)
395 1z57_A Dual specificity protei 98.6 3.9E-08 1.3E-12 105.2 8.3 85 737-825 19-111 (339)
396 1wak_A Serine/threonine-protei 98.6 3.9E-08 1.3E-12 107.9 8.4 91 737-829 42-145 (397)
397 3e3p_A Protein kinase, putativ 98.6 2.8E-08 9.5E-13 107.6 7.0 83 737-821 28-116 (360)
398 2dyl_A Dual specificity mitoge 98.6 6.9E-08 2.3E-12 102.4 9.6 90 737-829 30-123 (318)
399 4h09_A Hypothetical leucine ri 98.6 3.9E-06 1.4E-10 91.2 23.0 78 355-434 241-318 (379)
400 4hgt_A Casein kinase I isoform 98.6 5.6E-08 1.9E-12 101.9 7.8 90 737-830 14-105 (296)
401 3sv0_A Casein kinase I-like; t 98.6 1E-07 3.5E-12 106.8 9.6 89 737-830 12-103 (483)
402 2vx3_A Dual specificity tyrosi 98.5 1.4E-07 4.8E-12 102.9 8.9 89 737-829 59-156 (382)
403 1q8y_A SR protein kinase; tran 98.5 7.1E-08 2.4E-12 104.9 6.5 86 737-824 24-123 (373)
404 4e7w_A Glycogen synthase kinas 98.5 8.9E-08 3E-12 104.9 6.9 79 737-819 45-127 (394)
405 1io0_A Tropomodulin; LRR prote 98.5 3E-08 1E-12 96.0 2.2 115 84-198 30-164 (185)
406 3rw6_A Nuclear RNA export fact 98.4 1.6E-08 5.6E-13 102.8 -1.1 105 85-191 136-257 (267)
407 4azs_A Methyltransferase WBDD; 98.4 1.3E-07 4.4E-12 108.3 6.2 89 740-830 242-342 (569)
408 2eu9_A Dual specificity protei 98.4 2.6E-07 8.9E-12 99.5 8.3 89 737-829 24-122 (355)
409 1zar_A RIO2 kinase; serine kin 98.4 1.7E-07 5.9E-12 97.2 6.5 77 737-819 95-189 (282)
410 1io0_A Tropomodulin; LRR prote 98.3 3.3E-07 1.1E-11 88.6 3.3 118 374-496 32-164 (185)
411 1zth_A RIO1 serine protein kin 97.9 7.6E-06 2.6E-10 83.6 5.3 80 737-822 52-165 (258)
412 3e4g_A ATP synthase subunit S, 97.8 6.8E-06 2.3E-10 77.3 2.0 82 114-195 62-149 (176)
413 3dzo_A Rhoptry kinase domain; 97.7 5.1E-05 1.7E-09 83.3 7.5 51 737-787 83-137 (413)
414 3e4g_A ATP synthase subunit S, 97.6 6.7E-06 2.3E-10 77.3 -0.2 84 136-222 60-149 (176)
415 4gyi_A RIO2 kinase; protein ki 97.6 1.4E-05 4.7E-10 85.5 1.6 80 737-820 100-201 (397)
416 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00012 3.9E-09 70.3 2.1 111 87-197 38-169 (197)
417 3d1u_A Putative fructosamine-3 97.0 0.00097 3.3E-08 68.9 7.5 75 737-817 20-97 (288)
418 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00017 5.8E-09 69.1 -0.4 86 110-195 38-136 (197)
419 3rfe_A Platelet glycoprotein I 96.5 0.004 1.4E-07 55.5 6.8 57 381-439 11-68 (130)
420 3rfe_A Platelet glycoprotein I 96.5 0.0047 1.6E-07 55.1 7.1 56 117-174 12-68 (130)
421 3tm0_A Aminoglycoside 3'-phosp 96.5 0.0031 1.1E-07 64.1 6.4 80 738-820 20-100 (263)
422 1nd4_A Aminoglycoside 3'-phosp 96.0 0.0046 1.6E-07 62.6 4.9 73 741-818 29-103 (264)
423 3f7w_A Putative fructosamine-3 93.4 0.11 3.9E-06 53.2 7.0 73 738-816 21-96 (288)
424 3dxp_A Putative acyl-COA dehyd 92.0 0.1 3.6E-06 55.4 4.5 79 738-817 44-128 (359)
425 2olc_A MTR kinase, methylthior 89.0 0.42 1.5E-05 51.4 6.0 74 738-815 36-120 (397)
426 3jr1_A Putative fructosamine-3 87.5 1.2 4.1E-05 46.0 8.0 74 738-817 42-118 (312)
427 4gkh_A Aminoglycoside 3'-phosp 87.3 1.4 4.8E-05 44.2 8.3 78 739-821 31-111 (272)
428 3r70_A Aminoglycoside phosphot 81.8 1.9 6.5E-05 44.6 6.5 70 737-818 42-115 (320)
429 3ovc_A Hygromycin-B 4-O-kinase 80.4 3.4 0.00012 43.6 7.9 74 738-818 47-122 (362)
430 3tdw_A Gentamicin resistance p 79.4 3.7 0.00013 42.1 7.6 75 738-819 25-102 (306)
431 3cxl_A N-chimerin; SH2, RHO-GA 77.2 0.26 8.9E-06 54.2 -2.2 54 745-798 152-214 (463)
432 3ats_A Putative uncharacterize 72.4 1 3.5E-05 47.4 1.1 81 738-818 26-121 (357)
433 2ks1_B Epidermal growth factor 72.1 4.1 0.00014 27.8 3.6 14 571-584 13-26 (44)
434 2l2t_A Receptor tyrosine-prote 64.7 5.2 0.00018 27.3 2.8 13 571-583 12-24 (44)
435 3sg8_A APH(2'')-ID; antibiotic 64.6 3.5 0.00012 42.1 3.2 77 737-819 25-105 (304)
436 2q83_A YTAA protein; 2635576, 53.5 16 0.00054 37.6 6.0 72 739-817 39-118 (346)
437 2lz0_A Uncharacterized protein 48.2 22 0.00074 29.3 4.7 45 125-170 8-52 (100)
438 2pyw_A Uncharacterized protein 42.6 27 0.00093 37.3 5.8 72 738-814 40-122 (420)
439 1zyl_A Hypothetical protein YI 41.4 36 0.0012 34.7 6.3 74 739-816 33-113 (328)
440 2lz0_A Uncharacterized protein 37.7 77 0.0026 25.9 6.5 45 366-411 8-52 (100)
441 1nw1_A Choline kinase (49.2 KD 30.9 52 0.0018 35.3 5.6 71 738-816 79-158 (429)
442 3csv_A Aminoglycoside phosphot 25.1 1.5E+02 0.005 30.1 7.7 78 739-823 25-105 (333)
443 2k1k_A Ephrin type-A receptor 23.8 38 0.0013 22.2 1.7 8 572-579 13-20 (38)
444 2ppq_A HSK, HK, homoserine kin 23.6 50 0.0017 33.4 3.7 74 738-816 28-109 (322)
445 2klu_A T-cell surface glycopro 23.0 31 0.0011 25.5 1.3 17 572-588 13-29 (70)
446 2qg7_A Ethanolamine kinase PV0 21.0 1.2E+02 0.004 32.8 6.1 73 738-817 114-188 (458)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-64 Score=603.10 Aligned_cols=520 Identities=29% Similarity=0.422 Sum_probs=347.8
Q ss_pred hcCCCHHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCccccCCCcEEEEEeCCCCCccc---cCc------
Q 003307 13 VNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGN---FSF------ 83 (832)
Q Consensus 13 ~~~~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~---~~~------ 83 (832)
.+++.++|++||++||+++. ||. ++++|+.+ .+|| .|.||+|+.++|++|+|++.++.|. +++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~--~l~~W~~~---~~~C--~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN--LLPDWSSN---KNPC--TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT--SSTTCCTT---SCGG--GSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc--cccCCCCC---CCCc--CCcceEECCCcEEEEECCCCCcCCccCccChhHhccC
Confidence 34456789999999999994 776 48999742 4666 9999999989999999999999886 421
Q ss_pred ----------------ccccCCCCCCEEEcCCCCCcccCC---CCCCCCCCCEEECCCCCCCccCccc------------
Q 003307 84 ----------------PTIIGLKMLCNVSVSNNQLMGNIT---DIGSIQSLEFLDLSHNLFHGLIPSG------------ 132 (832)
Q Consensus 84 ----------------~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~------------ 132 (832)
..++++++|++|||++|.++|.+| .++.+++|++|+|++|.+++.+|..
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 355666777777777777765443 3555555555555555544443332
Q ss_pred ----------------c----------------------cCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCC
Q 003307 133 ----------------I----------------------VSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFG 174 (832)
Q Consensus 133 ----------------~----------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 174 (832)
+ ..+++|++|+|++|.+++.+|. |+++++|++|+|++|+++
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 2 2344555555555555555555 777788888888888888
Q ss_pred CccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCC----------------------
Q 003307 175 GDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHD---------------------- 232 (832)
Q Consensus 175 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------------------- 232 (832)
+.+|..+.++++|++|+|++|.+++.+|.. .+++|++|++++|.+++.+|...
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL-----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC-----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc-----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 788888888888888888888777655542 23445555555555544444330
Q ss_pred -CCCCCCCcCEEEccCCcccccCC--CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCC---------
Q 003307 233 -GMPYFDNLEVFDASNNHLVGAIP--SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE--------- 300 (832)
Q Consensus 233 -~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~--------- 300 (832)
.+..+++|+.|++++|.+++.+| .+..+++|++|++++|++++.+|..+... ..+|+.|++++|+++
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-SASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH-TTTCSEEECCSSEEEEECCTTTTC
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh-hcCCcEEEccCCCcCCCcChhhhh
Confidence 04444455555555555544444 24455555555555555554555444211 013333333333333
Q ss_pred -----------------CccCc--cCCCCCCEEEecCCeecccCCCCC---CCCCEEecCCCCCcCcchhhccccCcccE
Q 003307 301 -----------------GPVGS--ITSATLKKVNLSSNKLSGSLPARV---GHCTIVDLSNNRLSGDLSRMQNWGNYVED 358 (832)
Q Consensus 301 -----------------~~~~~--~~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~L~~N~l~~~~~~~~~~~~~L~~ 358 (832)
+.+|. ....+|++|++++|++++.+|..+ .+|+.|++++|++++.++..+...++|+.
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 22221 112356666666666666655433 35567777777777766666666677888
Q ss_pred EEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcc
Q 003307 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438 (832)
Q Consensus 359 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 438 (832)
|+|++|.+++.+|..+..+++|++|+|++|++++.+|..++.+++|++|++++|++++.+|..+..+++|+.|+|++|++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 88888888888888888888888888888888888888888888999999999999888888888899999999999999
Q ss_pred cccCCcccccCCCC------------------------------------------------------------------
Q 003307 439 SGPLPLQEIQNNPS------------------------------------------------------------------ 452 (832)
Q Consensus 439 ~~~~p~~~~~~~~~------------------------------------------------------------------ 452 (832)
+|.+|..+......
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 88888655332110
Q ss_pred -------CcccCc------------ccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc--CCCcEEE
Q 003307 453 -------TGSTQN------------LSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFN 511 (832)
Q Consensus 453 -------~~~~~~------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ 511 (832)
.++.|. ..|+.|||++|+++|.+|..++++++|+.|||++|+++|.+|..+. ..|++||
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 011111 1267777777777777777777788888888888888888877766 5788888
Q ss_pred cCCCccccccCcc--CCCCCCCCCCCCCCCCCCCCCCCC
Q 003307 512 VSFNNLSGVVPEN--LRNFPDSAFHPGNSLLTFPNSPSQ 548 (832)
Q Consensus 512 ls~N~l~g~~p~~--~~~~~~~~~~~~n~~~~~~~~~~~ 548 (832)
+++|+++|.+|.. |.+++..+|. ||+.+|+++.+.|
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~~~-gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAKFL-NNPGLCGYPLPRC 748 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGGGC-SCTEEESTTSCCC
T ss_pred CcCCcccccCCCchhhccCCHHHhc-CCchhcCCCCcCC
Confidence 8888888888865 6677777775 9999998654433
No 2
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.5e-53 Score=505.13 Aligned_cols=465 Identities=20% Similarity=0.239 Sum_probs=346.6
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCcccccCccccC--CCCCCCCCCC------------CccccC-CCcEEEEEeCCCCCcc
Q 003307 15 ALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKS--LSSDGCPRNW------------FGITCT-NGYVTSIMLNDMGLVG 79 (832)
Q Consensus 15 ~~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~--~~~~~c~~~w------------~gv~C~-~~~v~~l~l~~~~l~g 79 (832)
+...+|+.||++||+++ .+| +|+.+. +..++|.|.| .||.|+ .++|++|+|+++++.|
T Consensus 265 ~~~~~d~~ALl~~k~~l-~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEAL-DGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CHHHHHHHHHHHHHHHT-TGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEE
T ss_pred ccchHHHHHHHHHHHHc-CCC------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCC
Confidence 34467999999999998 343 686542 1235655799 999998 6899999999999999
Q ss_pred ccCcccccCCCCCCEEEc-CCCCCcccCC-CC------------------------------------------------
Q 003307 80 NFSFPTIIGLKMLCNVSV-SNNQLMGNIT-DI------------------------------------------------ 109 (832)
Q Consensus 80 ~~~~~~~~~l~~L~~L~L-s~n~l~~~~~-~~------------------------------------------------ 109 (832)
.+ ++.+++|++|+.||| ++|.++|..+ ..
T Consensus 338 ~i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 338 RV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EE-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred cC-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 99 479999999999999 8898877633 21
Q ss_pred ---CCCCCCCEEECCC--CCCCccCcccccCCCCCCEEEcccccccc-----------------cCCCCCC--CCCCCCE
Q 003307 110 ---GSIQSLEFLDLSH--NLFHGLIPSGIVSLKNLMLLNISSNSFEG-----------------TFPSGFG--GLGKLKY 165 (832)
Q Consensus 110 ---~~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L~~ 165 (832)
.....++.+.+.. |++++ +|..|+++++|++|+|++|+|++ .+|..++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 1122344444444 88988 79999999999999999999998 3899988 9999999
Q ss_pred eeCcCCCCCCccchhhhcCCCCCEEECccCc-Ccc-ccCCCCC----CCCCCCCccEEECCCCCCeeccCC--CCCCCCC
Q 003307 166 LDLRANRFGGDIMHLLSQLGSVVHVDLSNNQ-FSG-SLDLGLG----DSSFISSIQYLNISENSLVGELFP--HDGMPYF 237 (832)
Q Consensus 166 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~-~~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l 237 (832)
|+|++|++.+.+|..|+++++|++|+|++|+ ++| .+|..++ .+..+++|+.|+|++|.++ .+|. . +..+
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~--l~~L 572 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS--LQKM 572 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH--HTTC
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh--hhcC
Confidence 9999999999999999999999999999998 998 7876654 3346679999999999998 7776 5 8899
Q ss_pred CCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCC-CCEEECCCCCCCCccCccCC---CCCCE
Q 003307 238 DNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMM-LSELDLSLNQLEGPVGSITS---ATLKK 313 (832)
Q Consensus 238 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~-L~~L~L~~N~l~~~~~~~~~---~~L~~ 313 (832)
++|+.|++++|.++ .+|.+..+++|+.|+|++|+++ .+|..+ ..+++ |+.|+|++|.++........ .+|+.
T Consensus 573 ~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 573 VKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648 (876)
T ss_dssp TTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTS--CEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEE
T ss_pred CCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHH--hhccccCCEEECcCCCCCcCchhhhccccCCCCE
Confidence 99999999999999 7778999999999999999999 888877 56677 99999999999843322222 24888
Q ss_pred EEecCCeecccCCCCC--------CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCC-------C
Q 003307 314 VNLSSNKLSGSLPARV--------GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQF-------L 378 (832)
Q Consensus 314 L~L~~N~l~~~~p~~l--------~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l-------~ 378 (832)
|++++|++++.+|... .+|+.|+|++|+++..+..++...++|+.|+|++|.|+.+.+..+... +
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGG
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccC
Confidence 8999988887665321 144455555555554444444334445555555555552222222111 1
Q ss_pred CCCEEEccCCcCCCCcccccC--CCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCccc
Q 003307 379 RLTSFKVSNNSLEGDLPAVLG--TYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGST 456 (832)
Q Consensus 379 ~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 456 (832)
+|+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++|+
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------- 787 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------- 787 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------------------
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------------------
Confidence 4555555555555 4444444 55555555555555554 34445555555555555542
Q ss_pred CcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCccccccCccC
Q 003307 457 QNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENL 525 (832)
Q Consensus 457 ~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g~~p~~~ 525 (832)
++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+.++|+.|++++|++....+..+
T Consensus 788 --------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 788 --------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp --------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCEEECGGG
T ss_pred --------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCccChHHc
Confidence 2345888999999999999999999999999 78999888899999999999876655443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-51 Score=484.88 Aligned_cols=464 Identities=20% Similarity=0.240 Sum_probs=328.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCcc-------cccCccccCCCCCCCCCCC---CccccC-CCcEEEEEeCCCCCccccCc
Q 003307 15 ALGQSDFEALLQLKKGIAKDPSGQ-------IIDSWDTKSLSSDGCPRNW---FGITCT-NGYVTSIMLNDMGLVGNFSF 83 (832)
Q Consensus 15 ~~~~~~~~~l~~~k~~~~~~~~~~-------~l~~w~~~~~~~~~c~~~w---~gv~C~-~~~v~~l~l~~~~l~g~~~~ 83 (832)
++...|+.||.++++++. ++.-. ...+|..+ .++| .| .||+|+ .++|++|+|+++++.|.++
T Consensus 26 ~~~~~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~W~~~---~~~c--~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp- 98 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALN-GKNWSQQGFGTQPGANWNFN---KELD--MWGAQPGVSLNSNGRVTGLSLEGFGASGRVP- 98 (636)
T ss_dssp CHHHHHHHHHHHHHHHTT-GGGCCCCC------CCCCCS---SCGG--GTTCCTTEEECTTCCEEEEECTTSCCEEEEC-
T ss_pred hhHHHHHHHHHHHHHHcC-CCCcccCCcCCccCCCCCCC---CCcc--cccCCCCeEEcCCCCEEEEEecCcccCCcCC-
Confidence 344579999999999873 22100 12367642 4555 99 999997 5799999999999999994
Q ss_pred ccccCCCCCCEEEcCCCCCcccC---------------------------------C-CCC-------------------
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNI---------------------------------T-DIG------------------- 110 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~---------------------------------~-~~~------------------- 110 (832)
+.+++|++|++|||++|.+.... + .+.
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 79999999999999999762111 1 111
Q ss_pred CCCCCCEEECC--CCCCCccCcccccCCCCCCEEEccccccccc-----------------CCCCCC--CCCCCCEeeCc
Q 003307 111 SIQSLEFLDLS--HNLFHGLIPSGIVSLKNLMLLNISSNSFEGT-----------------FPSGFG--GLGKLKYLDLR 169 (832)
Q Consensus 111 ~l~~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~L~ 169 (832)
....++.+.+. .|++++ +|..|+++++|++|+|++|.+++. +|..++ ++++|++|+|+
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 11122222222 578888 788899999999999999999985 888888 99999999999
Q ss_pred CCCCCCccchhhhcCCCCCEEECccCc-Ccc-ccCCCCCCC---CCCCCccEEECCCCCCeeccCC--CCCCCCCCCcCE
Q 003307 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQ-FSG-SLDLGLGDS---SFISSIQYLNISENSLVGELFP--HDGMPYFDNLEV 242 (832)
Q Consensus 170 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~-~~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~ 242 (832)
+|++.+.+|..++++++|++|+|++|+ ++| .+|..++.+ ..+++|++|++++|+++ .+|. . +..+++|+.
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~--l~~l~~L~~ 334 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS--LQKMKKLGM 334 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH--HTTCTTCCE
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh--hccCCCCCE
Confidence 999999999999999999999999998 888 777766542 33478999999999998 6766 4 888899999
Q ss_pred EEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCC-CCEEECCCCCCCCccCccCC---CCCCEEEecC
Q 003307 243 FDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMM-LSELDLSLNQLEGPVGSITS---ATLKKVNLSS 318 (832)
Q Consensus 243 L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~-L~~L~L~~N~l~~~~~~~~~---~~L~~L~L~~ 318 (832)
|++++|.++|.+|.+..+++|++|++++|+++ .+|..+ ..+++ |++|++++|.++........ .+|+.|++++
T Consensus 335 L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 335 LECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANF--CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTS--EEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCS
T ss_pred EeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhh--hhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcC
Confidence 99999999988888888899999999999998 788776 56777 99999999998843332222 2688899999
Q ss_pred CeecccCCCCCC----------CCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCC-------CCC
Q 003307 319 NKLSGSLPARVG----------HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFL-------RLT 381 (832)
Q Consensus 319 N~l~~~~p~~l~----------~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~-------~L~ 381 (832)
|++++.+|..+. +|+.|++++|+++.....++...++|+.|+|++|.++.+.+..+.... +|+
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 999888887665 344444444444443333333333444444444444422222222111 444
Q ss_pred EEEccCCcCCCCcccccC--CCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcc
Q 003307 382 SFKVSNNSLEGDLPAVLG--TYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL 459 (832)
Q Consensus 382 ~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 459 (832)
+|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~---------------------- 547 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR---------------------- 547 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB----------------------
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc----------------------
Confidence 4444444444 3344333 44444444444444444 34444444444444444442
Q ss_pred cccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCccccccC
Q 003307 460 SLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP 522 (832)
Q Consensus 460 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g~~p 522 (832)
++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+.++|+.|++++|++...-+
T Consensus 548 -----~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 548 -----DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNISIDL 604 (636)
T ss_dssp -----CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCEEEC
T ss_pred -----ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCccccH
Confidence 2267888999999999999999999999999 68998888899999999998875443
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-51 Score=496.26 Aligned_cols=439 Identities=29% Similarity=0.419 Sum_probs=329.1
Q ss_pred cEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCc-----------------
Q 003307 66 YVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHG----------------- 127 (832)
Q Consensus 66 ~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~----------------- 127 (832)
.++.++++++.+.+.++ .+.++++|++|+|++|.+++.+| .++.+++|++|+|++|.+++
T Consensus 201 ~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~ 278 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278 (768)
T ss_dssp TCCEEECCSSCCCSCCC--BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCS
T ss_pred cCCEEECcCCcCCCCCc--ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcC
Confidence 45566666666665542 25556666666666666655555 55555555555555555554
Q ss_pred -----cCcccccCC-CCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchh-hhcCCCCCEEECccCcCccc
Q 003307 128 -----LIPSGIVSL-KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL-LSQLGSVVHVDLSNNQFSGS 200 (832)
Q Consensus 128 -----~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~ 200 (832)
.+|..+..+ ++|++|+|++|.+++.+|..|+++++|++|+|++|++++.+|.. +.++++|++|+|++|.+++.
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 444444443 55555555555555555555555555555555555555444433 55555555555555555555
Q ss_pred cCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCCh
Q 003307 201 LDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPV 279 (832)
Q Consensus 201 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~ 279 (832)
+|..+..+. ++|+.|++++|.+++.+++......+++|+.|++++|.+++.+| .+..+++|++|++++|++++.+|.
T Consensus 359 ~p~~l~~l~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 359 LPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp CCTTHHHHT--TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccHHHHhhh--cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH
Confidence 554443321 26777777777777777766222237789999999999988888 788899999999999999988898
Q ss_pred hhhhhCCCCCCEEECCCCCCCCccCcc--CCCCCCEEEecCCeecccCCCCC---CCCCEEecCCCCCcCcchhhccccC
Q 003307 280 ALLQESSMMLSELDLSLNQLEGPVGSI--TSATLKKVNLSSNKLSGSLPARV---GHCTIVDLSNNRLSGDLSRMQNWGN 354 (832)
Q Consensus 280 ~~~~~~~~~L~~L~L~~N~l~~~~~~~--~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~L~~N~l~~~~~~~~~~~~ 354 (832)
.+ ..+++|+.|++++|.+++.+|.. ...+|++|++++|++++.+|..+ .+|+.|++++|++++.++..+...+
T Consensus 437 ~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 437 SL--GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp GG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HH--hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 87 67889999999999999877743 35689999999999999888755 5678999999999998888777778
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccc------------------------------------
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVL------------------------------------ 398 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------------------------------------ 398 (832)
+|+.|+|++|.+++.+|..+..+++|++|++++|+++|.+|..+
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999988777543
Q ss_pred ----------------------------------CCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCc
Q 003307 399 ----------------------------------GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPL 444 (832)
Q Consensus 399 ----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 444 (832)
..+++|++|||++|+++|.+|..|+.++.|+.|+|++|+++|.+|.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 3356799999999999999999999999999999999999999998
Q ss_pred ccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc-CCCcEEEcCCCc-ccc
Q 003307 445 QEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP-NGLKEFNVSFNN-LSG 519 (832)
Q Consensus 445 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~L~~l~ls~N~-l~g 519 (832)
.+..... |++|||++|+++|.+|..++++++|++|||++|+|+|.||.... ..+....+.+|. +.|
T Consensus 675 ~l~~L~~---------L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 675 EVGDLRG---------LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGGGCTT---------CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred HHhCCCC---------CCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence 8877654 99999999999999999999999999999999999999997643 344445566664 444
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-48 Score=459.88 Aligned_cols=457 Identities=18% Similarity=0.131 Sum_probs=388.8
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
..++.|+++++.+.+.. +..+.++++|++|+|++|.+.+..| .|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCC-hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 46899999999998754 5789999999999999999999888 899999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCcc--EEECCC
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQ--YLNISE 221 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~--~L~L~~ 221 (832)
|++|.+++..|..|+++++|++|+|++|++++.....+..+++|++|++++|.+++..+..++.+ ++|+ .|++++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~l~L~l~~ 188 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL---QQATNLSLNLNG 188 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT---TTCCSEEEECTT
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh---cccceeEEecCC
Confidence 99999998878899999999999999999998665556669999999999999997666555544 5666 799999
Q ss_pred CCCeeccCCCCCCCCC---------------------------------------------------CCcCEEEccCCcc
Q 003307 222 NSLVGELFPHDGMPYF---------------------------------------------------DNLEVFDASNNHL 250 (832)
Q Consensus 222 N~l~~~~~~~~~~~~l---------------------------------------------------~~L~~L~Ls~N~l 250 (832)
|.+++..+.. +... .+|+.|++++|.+
T Consensus 189 n~l~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 189 NDIAGIEPGA--FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp CCCCEECTTT--TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CccCccChhH--hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 9998765543 2210 1688899999999
Q ss_pred cccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccC--ccCCCCCCEEEecCCeecccCCC
Q 003307 251 VGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVG--SITSATLKKVNLSSNKLSGSLPA 327 (832)
Q Consensus 251 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~--~~~~~~L~~L~L~~N~l~~~~p~ 327 (832)
++..+ .+..+++|++|++++|+++ .+|..+ ..+++|++|++++|.+++..+ ....++|++|++++|.+.+.+|.
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGL--VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC--CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CccCHHHhccccCCCEEeccCCccC-CCChhh--cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 98777 6899999999999999998 788877 678899999999999998755 33457999999999999877765
Q ss_pred ----CCCCCCEEecCCCCCcCcc--hhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccc-ccCC
Q 003307 328 ----RVGHCTIVDLSNNRLSGDL--SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA-VLGT 400 (832)
Q Consensus 328 ----~l~~l~~L~L~~N~l~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~ 400 (832)
.+.+|+.|++++|.+++.. +..+...++|++|++++|.+++..|..+..+++|++|++++|++++..+. .+..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 3567889999999998876 55566667899999999999999999999999999999999999987665 4899
Q ss_pred CCCCCEEEccCCcccccCcccccCCCCCCeEeccCCccccc-CC--cccccCCCCCcccCcccccEEEccCCcCcccCCh
Q 003307 401 YPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP-LP--LQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLP 477 (832)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p--~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~ 477 (832)
+++|++|++++|.+++..+..+..+++|++|+|++|++++. +| ..+... .+|++|+|++|++++..|.
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l---------~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL---------GRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC---------TTCCEEECTTSCCCEECTT
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC---------CCccEEECCCCccCccChh
Confidence 99999999999999999999999999999999999999863 22 222222 2499999999999999999
Q ss_pred hhhcCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCC---CCCCCCCCCCCCC
Q 003307 478 GISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNF---PDSAFHPGNSLLT 541 (832)
Q Consensus 478 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~---~~~~~~~~n~~~~ 541 (832)
.+..+++|+.|+|++|++++.+|..+. ..| .|++++|++++..|..+..+ ....+ .+|+..|
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l-~~N~~~c 561 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL-RQNPLDC 561 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC-TTCCEEC
T ss_pred hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC-CCCCccc
Confidence 999999999999999999999888876 678 99999999999888764433 22223 3676655
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-47 Score=446.08 Aligned_cols=445 Identities=20% Similarity=0.144 Sum_probs=370.0
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
.+++.|+++++.+.+.. +..+.++++|++|+|++|.+++..| .|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 57899999999998755 5689999999999999999999888 899999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCC-ccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCC-ccEEECCC
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG-DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISS-IQYLNISE 221 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~-L~~L~L~~ 221 (832)
|++|.+++..+..|+++++|++|+|++|++++ .+|..|+++++|++|++++|++++..+..++.+..++. ++.|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999998888899999999999999999986 56999999999999999999999877777766554544 56899999
Q ss_pred CCCeeccCCCCCCCCCCCcCEEEccCCccc--------------------------------------------------
Q 003307 222 NSLVGELFPHDGMPYFDNLEVFDASNNHLV-------------------------------------------------- 251 (832)
Q Consensus 222 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------------------------------------- 251 (832)
|.+++..+.. +... +|+.|++++|.++
T Consensus 191 n~l~~~~~~~--~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 191 NPIDFIQDQA--FQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp CCCCEECTTT--TTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred CCcceeCccc--ccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 9987544333 4433 7888888887654
Q ss_pred --------ccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecc
Q 003307 252 --------GAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG 323 (832)
Q Consensus 252 --------~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~ 323 (832)
+.+|.+..+++|+.|++++|.+. .+| .+ ..+++|+.|++++|.+ +.+|....++|+.|++++|+..+
T Consensus 268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l--~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DV--PKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp ECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CC--CTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCE
T ss_pred ccccccccccccccccCCCCCEEEecCccch-hhh-hc--cccccCCEEEcccccC-cccccCCCCccceeeccCCcCcc
Confidence 22334566788888999988886 566 44 5677899999999998 44554466789999999995544
Q ss_pred cCC-CCCCCCCEEecCCCCCcCcc--hhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcc-cccC
Q 003307 324 SLP-ARVGHCTIVDLSNNRLSGDL--SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLP-AVLG 399 (832)
Q Consensus 324 ~~p-~~l~~l~~L~L~~N~l~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~ 399 (832)
.++ ..+.+|+.|++++|++++.. +..+...++|++|++++|.+++ +|..+..+++|+.|++++|++++..| ..+.
T Consensus 343 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 332 35678889999999998763 4555556689999999999886 45788899999999999999998877 6888
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCccccc-CCcccccCCCCCcccCcccccEEEccCCcCcccCChh
Q 003307 400 TYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP-LPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG 478 (832)
Q Consensus 400 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 478 (832)
.+++|++|++++|++++..|..+..+++|++|+|++|++++. +|..+.... +|++|+|++|++++..|..
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~---------~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT---------NLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT---------TCCEEECTTSCCCEECTTT
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC---------CCCEEECCCCcCCccChhh
Confidence 999999999999999998899999999999999999999874 565544433 4999999999999998999
Q ss_pred hhcCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCCC
Q 003307 479 ISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNFP 529 (832)
Q Consensus 479 l~~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~~ 529 (832)
+.++++|+.|+|++|++++.+|..+. .+|+.|++++|+++ .+|..+..++
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 99999999999999999988887776 68999999999998 4565565554
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.7e-47 Score=449.56 Aligned_cols=473 Identities=20% Similarity=0.159 Sum_probs=256.9
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
.+++.|+++++++.+.. +..+.++++|++|+|++|.+++..| .|+++++|++|+|++|.++++.+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35666666666665532 3445566666666666666655555 455556666666666655554444555555566666
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcc------------------------
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG------------------------ 199 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~------------------------ 199 (832)
|++|++++..|..|+++++|++|+|++|.+++..+..+.++++|++|++++|.+++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 65555555555555555555555555555555555555555555555555555543
Q ss_pred --ccCCCCCCCCCC------------------------CCccEEECCCCCCeeccCCCCCCCCCCC--cCEEEccCCccc
Q 003307 200 --SLDLGLGDSSFI------------------------SSIQYLNISENSLVGELFPHDGMPYFDN--LEVFDASNNHLV 251 (832)
Q Consensus 200 --~~~~~~~~~~~l------------------------~~L~~L~L~~N~l~~~~~~~~~~~~l~~--L~~L~Ls~N~l~ 251 (832)
..|..+..+..+ ++|+.|++++|.+++..+.. +..++. |+.|++++|.++
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~--~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT--FLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT--TGGGGGSCCCEEECTTSCCC
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH--hhccCcCCCCEEECCCCCcC
Confidence 333222222111 34566666666665554444 555544 888888888888
Q ss_pred ccCC-CccccccccEEEccccCCCCCCChhhhh-------------------------------hCCCCCCEEECCCCCC
Q 003307 252 GAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQ-------------------------------ESSMMLSELDLSLNQL 299 (832)
Q Consensus 252 ~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~-------------------------------~~~~~L~~L~L~~N~l 299 (832)
+..+ .+..+++|++|++++|++++..|..+.. ..+++|++|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 7776 6788888888888888887665544410 1233444445555544
Q ss_pred CCccCcc--CCCCCCEEEecCCeecccC-CC-CC-----CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCC--
Q 003307 300 EGPVGSI--TSATLKKVNLSSNKLSGSL-PA-RV-----GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG-- 368 (832)
Q Consensus 300 ~~~~~~~--~~~~L~~L~L~~N~l~~~~-p~-~l-----~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~-- 368 (832)
++..+.. ...+|++|++++|.+.... +. .+ .+++.|++++|++++..+..+....+|+.|+|++|.+++
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 4433211 1123333333333211100 00 00 122333333333333333333333344444444444443
Q ss_pred -----------------------CCcccccCCCCCCEEEccCCcCC--CCcccccCCCCCCCEEEccCCcccccCccccc
Q 003307 369 -----------------------MVPNQTSQFLRLTSFKVSNNSLE--GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFF 423 (832)
Q Consensus 369 -----------------------~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 423 (832)
..+..|..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..+..|.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 33333333444444444444433 33455555666666666666666665555566
Q ss_pred CCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCc
Q 003307 424 TSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGL 503 (832)
Q Consensus 424 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 503 (832)
++++|++|+|++|++++..+..+.. .+........+|++|+|++|+++...+..|.++++|+.|+|++|++++..+..+
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPG-GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTT-SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccCEEeCCCCCccccchhhccC-CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 6666666666666665432111000 000011222358888888888885545568888899999999998885444444
Q ss_pred c--CCCcEEEcCCCccccccCccCC----CCCCCCCCCCCCCCCC
Q 003307 504 P--NGLKEFNVSFNNLSGVVPENLR----NFPDSAFHPGNSLLTF 542 (832)
Q Consensus 504 ~--~~L~~l~ls~N~l~g~~p~~~~----~~~~~~~~~~n~~~~~ 542 (832)
. .+|+.|++++|++++..|..+. .+....+ .+|+..|.
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l-~~N~~~c~ 624 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM-RFNPFDCT 624 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC-TTCCCCBC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEc-cCCCcccC
Confidence 3 6888999999998887776432 3332233 37777664
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-47 Score=444.75 Aligned_cols=426 Identities=18% Similarity=0.132 Sum_probs=367.6
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
..+++|||++|.+++..+ .|+++++|++|+|++|.++++.|..|.++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 378999999999999988 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcC--EEEcc
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLE--VFDAS 246 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~--~L~Ls 246 (832)
++|++++..+..++++++|++|++++|.+++.....+ ..+++|+.|++++|.+++..+.. +..+++|+ .|+++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG---FPTEKLKVLDFQNNAIHYLSKED--MSSLQQATNLSLNLN 187 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT---CCCTTCCEEECCSSCCCEECHHH--HHTTTTCCSEEEECT
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccc---cCCcccCEEEcccCcccccChhh--hhhhcccceeEEecC
Confidence 9999999888889999999999999999986332222 23799999999999998765554 77888888 89999
Q ss_pred CCcccccCC-Ccccc---------------------------------------------------ccccEEEccccCCC
Q 003307 247 NNHLVGAIP-SFNFV---------------------------------------------------FSLRILRLGSNQLS 274 (832)
Q Consensus 247 ~N~l~~~~~-~~~~l---------------------------------------------------~~L~~L~L~~N~l~ 274 (832)
+|.+++..| .+... .+|+.|++++|+++
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 999998777 33211 16788899999998
Q ss_pred CCCChhhhhhCCCCCCEEECCCCCCCCccCc-cCCCCCCEEEecCCeecccCCC---CCCCCCEEecCCCCCcCcch-hh
Q 003307 275 GSLPVALLQESSMMLSELDLSLNQLEGPVGS-ITSATLKKVNLSSNKLSGSLPA---RVGHCTIVDLSNNRLSGDLS-RM 349 (832)
Q Consensus 275 ~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~-~~~~~L~~L~L~~N~l~~~~p~---~l~~l~~L~L~~N~l~~~~~-~~ 349 (832)
+..+..+ ..+++|++|++++|+++..... ....+|++|++++|++++..|. .+.+|+.|++++|.+.+.++ ..
T Consensus 268 ~~~~~~~--~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 NISSNTF--HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SCCTTTT--TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred ccCHHHh--ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 6555555 5788999999999999965443 3346999999999999987664 45678999999999986554 44
Q ss_pred ccccCcccEEEcCCCcCCCCC--cccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCccc-ccCCC
Q 003307 350 QNWGNYVEDIHLSSNFLTGMV--PNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPS-FFTST 426 (832)
Q Consensus 350 ~~~~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~ 426 (832)
+...++|++|++++|.+++.. +..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+.. +..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 666778999999999999876 788999999999999999999989999999999999999999999887655 88999
Q ss_pred CCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCccc---CChhhhcCCCCCEEeCcCCcCcccCCCCc
Q 003307 427 KLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR---LLPGISKFHNLVYLNLSNNKFEGSIPDGL 503 (832)
Q Consensus 427 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 503 (832)
+|+.|++++|.+++..|..+.... +|++|+|++|++++. .+..+..+++|+.|+|++|++++..|..+
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLP---------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCT---------TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred cCCEEECCCCccCCcCHHHHhCCC---------CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 999999999999987776554443 499999999999873 33679999999999999999999888877
Q ss_pred c--CCCcEEEcCCCccccccCccCCCCCCC
Q 003307 504 P--NGLKEFNVSFNNLSGVVPENLRNFPDS 531 (832)
Q Consensus 504 ~--~~L~~l~ls~N~l~g~~p~~~~~~~~~ 531 (832)
. ++|+.|++++|++++..|..+..++..
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc
Confidence 6 789999999999999999887766543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=465.51 Aligned_cols=474 Identities=20% Similarity=0.165 Sum_probs=297.5
Q ss_pred CCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccC-C-CCCCCCCCCEEECCCCCCCccCcc
Q 003307 54 PRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNI-T-DIGSIQSLEFLDLSHNLFHGLIPS 131 (832)
Q Consensus 54 ~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~~l~~L~~L~Ls~N~l~~~~p~ 131 (832)
.+.|..|.+-..+++.|+|+++.+.+.. +..+.++++|++|||++|.+.+.+ | .|.++++|++|+|++|.|++..|.
T Consensus 13 ~~~L~~vP~lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 13 FCNLTQVPQVLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCCSSCCCSSCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCCCCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 4578888876678999999999988765 578999999999999999766665 5 799999999999999999999999
Q ss_pred cccCCCCCCEEEcccccccccCCCC--CCCCCCCCEeeCcCCCCCCccc-hhhhcCCCCCEEECccCcCccccCCCCCCC
Q 003307 132 GIVSLKNLMLLNISSNSFEGTFPSG--FGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208 (832)
Q Consensus 132 ~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 208 (832)
.|.++++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999999866665 8999999999999999988755 679999999999999999987665544332
Q ss_pred CCCCCccEEECCCCCCeeccCCCCCCCCCCC------cCEEEccCCcccccCC-Cccc----------------------
Q 003307 209 SFISSIQYLNISENSLVGELFPHDGMPYFDN------LEVFDASNNHLVGAIP-SFNF---------------------- 259 (832)
Q Consensus 209 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~------L~~L~Ls~N~l~~~~~-~~~~---------------------- 259 (832)
.. ++|+.|+++.|.+.+..+.. +..+.+ |+.|++++|.+++..+ .+..
T Consensus 172 ~~-~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 172 QG-KTLSFFSLAANSLYSRVSVD--WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HH-CSSCCCEECCSBSCCCCCCC--CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred cC-CccceEECCCCccccccccc--hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 11 45555566666555544433 333322 5555555555443333 1110
Q ss_pred ----------------cccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCcc--CCCCCCEEEecCCee
Q 003307 260 ----------------VFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSI--TSATLKKVNLSSNKL 321 (832)
Q Consensus 260 ----------------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~--~~~~L~~L~L~~N~l 321 (832)
.++|+.|++++|.+.+..|..+ ..+++|+.|+|++|++++..+.. ...+|++|+|++|++
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 1233344444444333322222 23333444444444443332211 122344444444443
Q ss_pred cccCCCCC---CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCC------------------CcccccCCCCC
Q 003307 322 SGSLPARV---GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM------------------VPNQTSQFLRL 380 (832)
Q Consensus 322 ~~~~p~~l---~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~------------------~p~~~~~l~~L 380 (832)
++..|..+ .+|+.|++++|++.+..+..+...++|+.|+|++|.+++. +|.. ..++
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~---~~~l 403 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI---NLTA 403 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC---CTTC
T ss_pred CccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc---cccc
Confidence 33322221 2233344444444333333333333344444444333321 1211 2334
Q ss_pred CEEEccCCcCCCCc-ccccCCCCCCCEEEccCCcccccCcc-cccCCCCCCeEeccCCcccccCCcccccCCCCCcccCc
Q 003307 381 TSFKVSNNSLEGDL-PAVLGTYPELKVIDLSLNHLNGFLLP-SFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQN 458 (832)
Q Consensus 381 ~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~ 458 (832)
+.|++++|++++.. +..+..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.+++..+..... ......
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~----~~~~~l 479 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW----DVFEGL 479 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS----SCSSCB
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch----hhhcCc
Confidence 44555555554321 22344666777777777777654433 2445667777777777765332211100 011122
Q ss_pred ccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCccccccCccCCCCCCCCCCCCCC
Q 003307 459 LSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNS 538 (832)
Q Consensus 459 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~n~ 538 (832)
.+|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..+..+|+.|++++|++++.+|..|..+....+. +|+
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~-~Np 558 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT-HNK 558 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEE-EEC
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEec-CCC
Confidence 3599999999999999888899999999999999999987777777899999999999999999887655433332 555
Q ss_pred CCC
Q 003307 539 LLT 541 (832)
Q Consensus 539 ~~~ 541 (832)
..|
T Consensus 559 ~~C 561 (844)
T 3j0a_A 559 FIC 561 (844)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=428.99 Aligned_cols=441 Identities=19% Similarity=0.145 Sum_probs=362.3
Q ss_pred CCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEE
Q 003307 64 NGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142 (832)
Q Consensus 64 ~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 142 (832)
+.+++.|+++++.+.+.. +..+.++++|++|||++|++++..+ .|+++++|++|+|++|.+++..|..|.++++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccC-hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 456899999999988754 5689999999999999999999887 79999999999999999999988999999999999
Q ss_pred EcccccccccCCCCCCCCCCCCEeeCcCCCCCC-ccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCc-cEEECC
Q 003307 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG-DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSI-QYLNIS 220 (832)
Q Consensus 143 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L-~~L~L~ 220 (832)
++++|++++..+..|+++++|++|+|++|.+++ .+|..|+++++|++|++++|.+++..+..++.+..++.+ +.|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999999998777689999999999999999987 469999999999999999999997766666554333322 799999
Q ss_pred CCCCeeccCCCCCCCCCCCcCEEEccCC----------------------------------------------------
Q 003307 221 ENSLVGELFPHDGMPYFDNLEVFDASNN---------------------------------------------------- 248 (832)
Q Consensus 221 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N---------------------------------------------------- 248 (832)
+|.+++..+.. +... +|+.|++++|
T Consensus 186 ~n~l~~~~~~~--~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 186 LNPMNFIQPGA--FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp TCCCCEECTTT--TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred CCCceecCHHH--hccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 99998765544 5544 6888887776
Q ss_pred ------cccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCee
Q 003307 249 ------HLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKL 321 (832)
Q Consensus 249 ------~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l 321 (832)
.+.+..+ .+..+++|+.|++++|.++ .+|..+ ... +|++|++++|.+. .++.....+|+.|++++|.+
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~--~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS--YNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCC--SCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBS
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhh--ccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcc
Confidence 2333344 5677888999999999887 577666 344 8899999999888 44445567899999999988
Q ss_pred cccCC-CCCCCCCEEecCCCCCcCcc--hhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcc-cc
Q 003307 322 SGSLP-ARVGHCTIVDLSNNRLSGDL--SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLP-AV 397 (832)
Q Consensus 322 ~~~~p-~~l~~l~~L~L~~N~l~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~ 397 (832)
.+..+ ..+.+|+.|++++|++++.. +..+...++|+.|++++|.+++..+. +..+++|++|++++|.+++..| ..
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 87666 35678889999999988764 44445556799999999998876555 8889999999999999987766 56
Q ss_pred cCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCccc-ccCCcccccCCCCCcccCcccccEEEccCCcCcccCC
Q 003307 398 LGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS-GPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL 476 (832)
Q Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p 476 (832)
+..+++|++|++++|++.+..+..|..+++|+.|+|++|+++ +.+|..+.... +|++|+|++|++++..|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~---------~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---------NLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT---------TCCEEECTTSCCCEECT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc---------CCCEEECCCCccccCCh
Confidence 888899999999999999888888888999999999999987 56775544433 48999999999998888
Q ss_pred hhhhcCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCc
Q 003307 477 PGISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPE 523 (832)
Q Consensus 477 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~ 523 (832)
..+..+++|+.|+|++|++++..|..+. ++|+.|++++|+++|.+|.
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8899999999999999999887776664 6889999999999888774
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-44 Score=431.78 Aligned_cols=441 Identities=20% Similarity=0.187 Sum_probs=296.4
Q ss_pred cEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEc
Q 003307 66 YVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNI 144 (832)
Q Consensus 66 ~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 144 (832)
.++.|+++++.+.+.. +..+.++++|++|+|++|.+++.++ .|+.+++|++|+|++|.++++.|..|+++++|++|+|
T Consensus 50 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred cCcEEECCCCccCccC-HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 4666777776666544 3556667777777777777666555 5666777777777777776666666667777777777
Q ss_pred ccccccccCCCCCCCCCCCCEeeCcCCCCCCccchh--------------------------hhcC--------------
Q 003307 145 SSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL--------------------------LSQL-------------- 184 (832)
Q Consensus 145 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------------l~~l-------------- 184 (832)
++|.+++..|..|.++++|++|+|++|++++..+.. +..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 777776666666666666666666666655544433 2221
Q ss_pred -------------CCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 185 -------------GSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 185 -------------~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++|++|++++|.+++..|..+..+. .++|+.|++++|.+++..+.. +..+++|+.|++++|.+.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~-~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-WTNLTMLDLSYNNLNVVGNDS--FAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG-GSCCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSCCBS
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC-cCCCCEEECCCCCcCccCccc--ccCcccccEeeCCCCccC
Confidence 2344444444445444443332221 022555555555554443333 444555555555555444
Q ss_pred ccCC----------------------------------CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCC
Q 003307 252 GAIP----------------------------------SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLN 297 (832)
Q Consensus 252 ~~~~----------------------------------~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N 297 (832)
+..| .+..+++|++|++++|++++..+..+ ..+++|++|++++|
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--TGLINLKYLSLSNS 363 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT--TTCTTCCEEECTTC
T ss_pred ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh--ccccCCcEEECCCC
Confidence 3322 23445666666667777765544444 34555555555555
Q ss_pred ----------------------------CCCCccCcc--CCCCCCEEEecCCeecccCCC----CCCCCCEEecCCCCCc
Q 003307 298 ----------------------------QLEGPVGSI--TSATLKKVNLSSNKLSGSLPA----RVGHCTIVDLSNNRLS 343 (832)
Q Consensus 298 ----------------------------~l~~~~~~~--~~~~L~~L~L~~N~l~~~~p~----~l~~l~~L~L~~N~l~ 343 (832)
++++..+.. ...+|+.|++++|++++.+|. .+.+|+.|++++|++.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 444433321 234666666666666655442 3445666777777766
Q ss_pred CcchhhccccCcccEEEcCCCcCC--CCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCc--
Q 003307 344 GDLSRMQNWGNYVEDIHLSSNFLT--GMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL-- 419 (832)
Q Consensus 344 ~~~~~~~~~~~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-- 419 (832)
+..+..+...++|+.|++++|.++ +.+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence 666656666678888999888887 5689999999999999999999998888889999999999999999987532
Q ss_pred ------ccccCCCCCCeEeccCCcccccCCcc-cccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcC
Q 003307 420 ------PSFFTSTKLTDLNLSGNNFSGPLPLQ-EIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSN 492 (832)
Q Consensus 420 ------~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 492 (832)
..|.++++|+.|+|++|+++ .+|.. +..+. +|+.|||++|++++..+..|..+++|+.|+|++
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~---------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLF---------ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT---------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHccccc---------CcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence 24788999999999999998 45543 33332 499999999999987777889999999999999
Q ss_pred CcCcccCCCCcc---CCCcEEEcCCCccccccC
Q 003307 493 NKFEGSIPDGLP---NGLKEFNVSFNNLSGVVP 522 (832)
Q Consensus 493 N~l~g~ip~~~~---~~L~~l~ls~N~l~g~~p 522 (832)
|++++..|..+. .+|+.+++++|++.+..+
T Consensus 594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999987766543 789999999999999876
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-45 Score=432.69 Aligned_cols=440 Identities=18% Similarity=0.132 Sum_probs=358.7
Q ss_pred EEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccc
Q 003307 69 SIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147 (832)
Q Consensus 69 ~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 147 (832)
.+++++.++.. + |..+. ++|++|+|++|.+++..+ .|.++++|++|+|++|.++++.|..|.++++|++|+|++|
T Consensus 15 ~~~c~~~~l~~-i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSK-V-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSS-C-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCccc-C-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 45666666653 2 22232 789999999999999988 8999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcc-ccCCCCCCCCCCCCccEEECCCCCCee
Q 003307 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG-SLDLGLGDSSFISSIQYLNISENSLVG 226 (832)
Q Consensus 148 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~L~~N~l~~ 226 (832)
.+++..|..|+++++|++|+|++|++++..+..++++++|++|++++|.+++ .+|..++ .+++|++|++++|.+++
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~---~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS---NLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG---TCTTCCEEECCSSCCCE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh---hcCCCCEEEccCCccee
Confidence 9999889999999999999999999998888889999999999999999986 4566555 45899999999999998
Q ss_pred ccCCCCCCCCCCCcC----EEEccCCcccccCCCccccccccEEEccccCCCCC-CChhhh-------------------
Q 003307 227 ELFPHDGMPYFDNLE----VFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGS-LPVALL------------------- 282 (832)
Q Consensus 227 ~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~------------------- 282 (832)
..+.. +..+.+|+ .|++++|.+++..+......+|+.|++++|.+++. +|..+.
T Consensus 168 ~~~~~--~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 168 ITVND--LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp ECTTT--THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred cChhh--hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 66655 76666654 89999999998777444445899999999987521 111110
Q ss_pred -----------------------------------hhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCC
Q 003307 283 -----------------------------------QESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPA 327 (832)
Q Consensus 283 -----------------------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~ 327 (832)
...+++|+.|++++|.+..........+|+.|++++|++ +.+|.
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~ 324 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT 324 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc
Confidence 023567788888888876654333446888888888888 56664
Q ss_pred -CCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCC--CcccccCCCCCCEEEccCCcCCCCcccccCCCCCC
Q 003307 328 -RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM--VPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPEL 404 (832)
Q Consensus 328 -~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 404 (832)
.+.+|+.|++++|+..+.. .+...++|+.|++++|.+++. +|..+..+++|++|++++|.+++ +|..+..+++|
T Consensus 325 ~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L 401 (606)
T 3vq2_A 325 LDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEEL 401 (606)
T ss_dssp CCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTC
T ss_pred CCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCC
Confidence 4556788888888655443 233455799999999999876 47888899999999999999884 66888899999
Q ss_pred CEEEccCCcccccCc-ccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcc-cCChhhhcC
Q 003307 405 KVIDLSLNHLNGFLL-PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG-RLLPGISKF 482 (832)
Q Consensus 405 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~l 482 (832)
+.|++++|++.+..+ ..+..+++|+.|++++|++++.+|..+.... +|++|++++|++++ .+|..++.+
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT---------SLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT---------TCCEEECTTCEEGGGEECSCCTTC
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC---------CCCEEECCCCcCCCcchHHhhccC
Confidence 999999999998877 6788999999999999999987776554443 49999999999998 478889999
Q ss_pred CCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCCCC
Q 003307 483 HNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNFPD 530 (832)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~~~ 530 (832)
++|+.|+|++|++++..|..+. .+|+.|++++|++++.+|..+..++.
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 9999999999999988888776 78999999999999988887766543
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=439.17 Aligned_cols=436 Identities=19% Similarity=0.154 Sum_probs=323.6
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCccc--ccCCCCCCE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSG--IVSLKNLML 141 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~ 141 (832)
..++.|+|+++...+.+++..+.++++|++|+|++|.+.+..| .|+.+++|++|+|++|.+++.+|.. |.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 4578899999988888877889999999999999999999988 8999999999999999999876665 999999999
Q ss_pred EEcccccccccCC-CCCCCCCCCCEeeCcCCCCCCccchhhhcC--CCCCEEECccCcCccccCCCCCCCCC--------
Q 003307 142 LNISSNSFEGTFP-SGFGGLGKLKYLDLRANRFGGDIMHLLSQL--GSVVHVDLSNNQFSGSLDLGLGDSSF-------- 210 (832)
Q Consensus 142 L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~~-------- 210 (832)
|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+ ++|+.|+|+.|.+++..+..++.+..
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 9999999998765 579999999999999999998888888776 67777777777766655544333211
Q ss_pred ---------------------------------------------------------CCCccEEECCCCCCeeccCCCCC
Q 003307 211 ---------------------------------------------------------ISSIQYLNISENSLVGELFPHDG 233 (832)
Q Consensus 211 ---------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~ 233 (832)
.++|+.|++++|.+.+..+..
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-- 285 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-- 285 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC--
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh--
Confidence 134555555555554443333
Q ss_pred CCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCcc--CCCC
Q 003307 234 MPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSI--TSAT 310 (832)
Q Consensus 234 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~--~~~~ 310 (832)
+..+++|+.|++++|.+++..+ .|..+++|++|+|++|++++..|..+ ..+++|+.|++++|.+.+..+.. ..++
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 5555556666666666555544 45555566666666666554444444 34555666666666555444321 2345
Q ss_pred CCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCC-cccccCCCCCCEEEccCCc
Q 003307 311 LKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV-PNQTSQFLRLTSFKVSNNS 389 (832)
Q Consensus 311 L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~ 389 (832)
|+.|++++|.+++.. . +.+++.|++++|+++.... ....++.|++++|.+++.. +..+..+++|++|+|++|+
T Consensus 364 L~~L~Ls~N~l~~i~-~-~~~L~~L~l~~N~l~~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 364 LQTLDLRDNALTTIH-F-IPSIPDIFLSGNKLVTLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCEEEEETCCSCCCS-S-CCSCSEEEEESCCCCCCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred CCEEECCCCCCCccc-C-CCCcchhccCCCCcccccc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 666666666655321 1 4555666666666653322 2346899999999998753 3345689999999999999
Q ss_pred CCCCccc-ccCCCCCCCEEEccCCccc-----ccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccE
Q 003307 390 LEGDLPA-VLGTYPELKVIDLSLNHLN-----GFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTS 463 (832)
Q Consensus 390 l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~ 463 (832)
+++..+. .+..+++|+.|++++|.++ +..+..|.++++|+.|+|++|++++..|..+.... +|+.
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------~L~~ 508 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT---------ALRG 508 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC---------SCSE
T ss_pred ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh---------hhhe
Confidence 9975543 4566899999999999997 44556788999999999999999987776554443 4999
Q ss_pred EEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCccccccC
Q 003307 464 LDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP 522 (832)
Q Consensus 464 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g~~p 522 (832)
|+|++|+|++..+..+. ++|+.|||++|+|++.+|..+. +|+.+++++|++.|..+
T Consensus 509 L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~-~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV-SLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS-SCCEEEEEEECCCCSSS
T ss_pred eECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC-CcCEEEecCCCcccccc
Confidence 99999999987777665 8999999999999999887764 79999999999998766
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-45 Score=424.90 Aligned_cols=440 Identities=19% Similarity=0.152 Sum_probs=288.4
Q ss_pred cEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEc
Q 003307 66 YVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNI 144 (832)
Q Consensus 66 ~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 144 (832)
.++.|+++++.+.+.. +..+.++++|++|+|++|.+++..+ .|+.+++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 27 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5667777777666543 3456677777777777777776665 6777777777777777777666666777777777777
Q ss_pred cccccccc-CCCCCCCCCCCCEeeCcCCCCCCcc-chhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCC
Q 003307 145 SSNSFEGT-FPSGFGGLGKLKYLDLRANRFGGDI-MHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISEN 222 (832)
Q Consensus 145 s~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N 222 (832)
++|.+++. .|..|+++++|++|+|++|.+.+.+ +..|.++++|++|++++|.+++..|..++. +++|+.|+++.|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~l~~n 182 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS---IRDIHHLTLHLS 182 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT---CSEEEEEEEECS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc---cccCceEecccC
Confidence 77777652 4556777777777777777633333 356677777777777777777666655443 366677777766
Q ss_pred CCeeccCCCCCCCCCCCcCEEEccCCcccccC----CCccccccccEEEccccCCCCCCChhhhh--hCCCCCCEEECCC
Q 003307 223 SLVGELFPHDGMPYFDNLEVFDASNNHLVGAI----PSFNFVFSLRILRLGSNQLSGSLPVALLQ--ESSMMLSELDLSL 296 (832)
Q Consensus 223 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~--~~~~~L~~L~L~~ 296 (832)
.+.. ++.. .+..+++|+.|++++|++++.. +....+++|+.|++++|.+++..+..+.. ..+..|+.+++++
T Consensus 183 ~~~~-~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 183 ESAF-LLEI-FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp BSTT-HHHH-HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cccc-cchh-hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 6532 1111 0234666777777777776532 13344566777777777666544433321 2345677777777
Q ss_pred CCCCCccCc--------cCCCCCCEEEecCCeecccCC--------CCCCCCCEEecCCCCCcCcchhhccccCcccEEE
Q 003307 297 NQLEGPVGS--------ITSATLKKVNLSSNKLSGSLP--------ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360 (832)
Q Consensus 297 N~l~~~~~~--------~~~~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~ 360 (832)
|.+.+.... ....+|+.|++.++.+..... ...++++.|++++|++...+..++...++|+.|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEE
Confidence 766553211 122456667766665543210 1134677888888888766655555556788888
Q ss_pred cCCCcCCCCCcc---cccCCCCCCEEEccCCcCCCCcc--cccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccC
Q 003307 361 LSSNFLTGMVPN---QTSQFLRLTSFKVSNNSLEGDLP--AVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSG 435 (832)
Q Consensus 361 Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 435 (832)
|++|.+++.+|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++ +|..+..+++|++|+|++
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTT
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCC
Confidence 888888876543 36777888888888888875432 457778888888888888884 566777788888888888
Q ss_pred CcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc-CCCcEEEcCC
Q 003307 436 NNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP-NGLKEFNVSF 514 (832)
Q Consensus 436 N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~L~~l~ls~ 514 (832)
|++++ +|.... .+|++|||++|++++.+ ..+++|+.|+|++|+++ .+|.... ++|++|++++
T Consensus 420 N~l~~-l~~~~~-----------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 420 TGIRV-VKTCIP-----------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISR 482 (549)
T ss_dssp SCCSC-CCTTSC-----------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCS
T ss_pred CCccc-ccchhc-----------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCC
Confidence 88763 232211 13888888888888653 46788888888888887 5665322 6788888888
Q ss_pred CccccccCccCCCCC
Q 003307 515 NNLSGVVPENLRNFP 529 (832)
Q Consensus 515 N~l~g~~p~~~~~~~ 529 (832)
|++++.+|..+..++
T Consensus 483 N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 483 NQLKSVPDGIFDRLT 497 (549)
T ss_dssp SCCCCCCTTGGGGCT
T ss_pred CccCCcCHHHHhcCc
Confidence 888887777655444
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-43 Score=414.30 Aligned_cols=437 Identities=17% Similarity=0.147 Sum_probs=360.0
Q ss_pred EEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccccc
Q 003307 70 IMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS 148 (832)
Q Consensus 70 l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 148 (832)
+++++.++.. + |..+ .++++.|||++|.+++..+ .|.++++|++|+|++|.++++.|..|.++++|++|+|++|.
T Consensus 12 ~~c~~~~l~~-i-p~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 12 YQCMELNFYK-I-PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EECCSSCCSS-C-CSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEeCCCCccc-c-CCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 4555555543 2 1222 2579999999999999888 89999999999999999999989999999999999999999
Q ss_pred ccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcc-ccCCCCCCCCCCCCccEEECCCCCCeec
Q 003307 149 FEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG-SLDLGLGDSSFISSIQYLNISENSLVGE 227 (832)
Q Consensus 149 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 227 (832)
+++..|..|.++++|++|+|++|++++..+..++++++|++|++++|.+++ .+|..++ .+++|++|++++|.+++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~---~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG---GCTTCCEEECTTSCCCEE
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhc---ccCCCCEEeCcCCcccee
Confidence 999888999999999999999999998877789999999999999999986 3565554 468999999999999876
Q ss_pred cCCCCCCCCCCCc----CEEEccCCcccccCC-CccccccccEEEccccC------------------------------
Q 003307 228 LFPHDGMPYFDNL----EVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQ------------------------------ 272 (832)
Q Consensus 228 ~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~------------------------------ 272 (832)
.+.. +..+++| +.|++++|.+++..+ .+... +|+.|++++|.
T Consensus 165 ~~~~--~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 165 YCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp CGGG--GHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred cHHH--ccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 5544 7777777 899999999998888 44443 78999888873
Q ss_pred ----------------------------CCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeeccc
Q 003307 273 ----------------------------LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGS 324 (832)
Q Consensus 273 ----------------------------l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~ 324 (832)
+.+.+|..+ ..+++|+.|++++|.+++........+|++|++++|.+...
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l 319 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT--GGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSC
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhh--cCcCcccEEEecCccchhhhhhhccCCccEEeeccCccccc
Confidence 223334434 45678999999999988654444334899999999998844
Q ss_pred CCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCC--cccccCCCCCCEEEccCCcCCCCcccccCCCC
Q 003307 325 LPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV--PNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYP 402 (832)
Q Consensus 325 ~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 402 (832)
....+.+|+.|++++|.+.+..+. ...++|+.|++++|.+++.. |..+..+++|++|++++|.+++..+. +..++
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~ 396 (570)
T 2z63_A 320 PTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE 396 (570)
T ss_dssp CBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCT
T ss_pred CcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccC
Confidence 344677889999999998876654 44567999999999998764 77888999999999999999865544 88999
Q ss_pred CCCEEEccCCcccccCc-ccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCc-ccCChhhh
Q 003307 403 ELKVIDLSLNHLNGFLL-PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLS-GRLLPGIS 480 (832)
Q Consensus 403 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~l~ 480 (832)
+|+.|++++|++.+..+ ..+..+++|++|++++|++++..|..+.... +|++|+|++|.++ +.+|..+.
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS---------SLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT---------TCCEEECTTCEEGGGEECSCCT
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC---------cCcEEECcCCcCccccchhhhh
Confidence 99999999999998766 5688899999999999999887776554443 4999999999998 67889999
Q ss_pred cCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCCCC
Q 003307 481 KFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNFPD 530 (832)
Q Consensus 481 ~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~~~ 530 (832)
.+++|+.|+|++|++++..|..+. ++|++|++++|++++..|..+..++.
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 999999999999999988888776 78999999999999988776655543
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=409.10 Aligned_cols=407 Identities=20% Similarity=0.187 Sum_probs=240.9
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
++|++|+|++|.+++..+ .|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|+. +|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence 455555555555555444 45555555555555555555555555555555555555555552 3333 4555555555
Q ss_pred cCCCCCC-ccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCc--cEEECCCCCC--eeccCCC------------
Q 003307 169 RANRFGG-DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSI--QYLNISENSL--VGELFPH------------ 231 (832)
Q Consensus 169 ~~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~~~~------------ 231 (832)
++|++++ .+|..|+++++|++|++++|.+++. .+. .+++| +.|++++|.+ .+..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~---~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVL---PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGG---GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchh---hcc---ccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 5555554 2445555555555555555555431 111 12333 5555555555 3333222
Q ss_pred ------------CCCCCCCCcCEEEccCCc-------ccccCCCccccccccEEEccccCCCCCCChhhhh-hCCCCCCE
Q 003307 232 ------------DGMPYFDNLEVFDASNNH-------LVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQ-ESSMMLSE 291 (832)
Q Consensus 232 ------------~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~~~L~~ 291 (832)
..+..+++|+.|++++|. +.+.++.+..+++|+.|++++|.+++..+..+.. ...++|++
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 123445555566665554 4444445555556666666665555432222211 01235666
Q ss_pred EECCCCCCCCccCcc-------CCCCCCEEEecCCeecccCCC-CC------CCCCEEecCCCCCcCcchhhccccCccc
Q 003307 292 LDLSLNQLEGPVGSI-------TSATLKKVNLSSNKLSGSLPA-RV------GHCTIVDLSNNRLSGDLSRMQNWGNYVE 357 (832)
Q Consensus 292 L~L~~N~l~~~~~~~-------~~~~L~~L~L~~N~l~~~~p~-~l------~~l~~L~L~~N~l~~~~~~~~~~~~~L~ 357 (832)
|++++|++++.+|.. ...+|+.+++++|.+ .+|. .+ .+++.|++++|.+..... ....++|+
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~ 327 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFL 327 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCccc
Confidence 666666666544421 234556666666665 3331 11 346677777776654331 13445688
Q ss_pred EEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCC--CcccccCCCCCCCEEEccCCcccccCcc-cccCCCCCCeEecc
Q 003307 358 DIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG--DLPAVLGTYPELKVIDLSLNHLNGFLLP-SFFTSTKLTDLNLS 434 (832)
Q Consensus 358 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls 434 (832)
+|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|+.|+|+
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 88888888887777778888888888888888876 4556777888888888888888774443 46777888888888
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCC-cc--CCCcEEE
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDG-LP--NGLKEFN 511 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~--~~L~~l~ 511 (832)
+|++++.+|..+. .+|++|||++|+++ .+|..+..+++|+.|+|++|+++ .+|.. +. .+|+.|+
T Consensus 408 ~N~l~~~~~~~l~-----------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 408 SNILTDTIFRCLP-----------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp SSCCCGGGGGSCC-----------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCCcchhhhhc-----------ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEE
Confidence 8888766654432 13788888888887 67777778888888888888887 45654 43 5788888
Q ss_pred cCCCccccccC
Q 003307 512 VSFNNLSGVVP 522 (832)
Q Consensus 512 ls~N~l~g~~p 522 (832)
+++|+++|..+
T Consensus 475 l~~N~~~c~c~ 485 (520)
T 2z7x_B 475 LHTNPWDCSCP 485 (520)
T ss_dssp CCSSCBCCCHH
T ss_pred CcCCCCcccCC
Confidence 88888877654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.6e-44 Score=418.38 Aligned_cols=448 Identities=21% Similarity=0.225 Sum_probs=335.4
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCc-cc-cCCCcEEEEEeCCCCCccccCcccccCCCCCCEE
Q 003307 18 QSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFG-IT-CTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNV 95 (832)
Q Consensus 18 ~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~g-v~-C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L 95 (832)
..+...-.++++-. ..-. -..|.... .+.+|.++|.. .. |..+...+|.++.. .+++.|
T Consensus 26 ~~~~~d~~aL~~~~-~~~~---~~~w~~~~-~~~~~~~~W~~~~~~c~w~~~~GV~C~~~--------------~~V~~L 86 (636)
T 4eco_A 26 AEYIKDYLALKEIW-DALN---GKNWSQQG-FGTQPGANWNFNKELDMWGAQPGVSLNSN--------------GRVTGL 86 (636)
T ss_dssp CHHHHHHHHHHHHH-HHTT---GGGCCCCC-------CCCCCSSCGGGTTCCTTEEECTT--------------CCEEEE
T ss_pred hhHHHHHHHHHHHH-HHcC---CCCcccCC-cCCccCCCCCCCCCcccccCCCCeEEcCC--------------CCEEEE
Confidence 34445566666554 1111 24686432 23344568963 22 33422244444322 368899
Q ss_pred EcCCCCCcccCC-CCCCCCCCCEEECCCCCCC------c---------------------------cCccccc-------
Q 003307 96 SVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFH------G---------------------------LIPSGIV------- 134 (832)
Q Consensus 96 ~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~------~---------------------------~~p~~~~------- 134 (832)
+|++|.+.|.+| ++++|++|++|+|++|.+. + .+|..+.
T Consensus 87 ~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 87 SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp ECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred EecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHh
Confidence 999999999998 9999999999999999762 1 1111111
Q ss_pred ------------CCCCCCEEEcc--cccccccCCCCCCCCCCCCEeeCcCCCCCCc-----------------cchhhh-
Q 003307 135 ------------SLKNLMLLNIS--SNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-----------------IMHLLS- 182 (832)
Q Consensus 135 ------------~l~~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~~~~l~- 182 (832)
....++.+.+. +|++++ +|..|+++++|++|+|++|++++. +|..++
T Consensus 167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~ 245 (636)
T 4eco_A 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245 (636)
T ss_dssp HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence 11123333332 689998 899999999999999999999986 899988
Q ss_pred -cCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCC-Cee-ccCCCCCCCCC------CCcCEEEccCCccccc
Q 003307 183 -QLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENS-LVG-ELFPHDGMPYF------DNLEVFDASNNHLVGA 253 (832)
Q Consensus 183 -~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~~~l------~~L~~L~Ls~N~l~~~ 253 (832)
++++|++|+|++|.+.+.+|..++. +++|++|++++|+ +++ .+|.. +..+ ++|+.|++++|+++..
T Consensus 246 ~~l~~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~Ls~n~~l~~~~lp~~--~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 246 DNLKDLTDVEVYNCPNLTKLPTFLKA---LPEMQLINVACNRGISGEQLKDD--WQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp GGCTTCCEEEEECCTTCSSCCTTTTT---CSSCCEEECTTCTTSCHHHHHHH--HHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred cccCCCCEEEecCCcCCccChHHHhc---CCCCCEEECcCCCCCccccchHH--HHhhhccccCCCCCEEECCCCcCCcc
Confidence 9999999999999999999977665 5899999999998 988 77765 5555 8999999999999944
Q ss_pred CC--CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCc-cCCCC-CCEEEecCCeecccCCCCC
Q 003307 254 IP--SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGS-ITSAT-LKKVNLSSNKLSGSLPARV 329 (832)
Q Consensus 254 ~~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~-~~~~~-L~~L~L~~N~l~~~~p~~l 329 (832)
.. .+..+++|++|++++|+++|.+| .+ ..+++|+.|++++|+++..... ....+ |++|++++|+++ .+|..+
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~--~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AF--GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CC--EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hh--CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 33 58999999999999999999999 55 5677888899888888732222 22245 777777777777 556544
Q ss_pred CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCccccc-------CCCCCCEEEccCCcCCCCcccccCCCC
Q 003307 330 GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTS-------QFLRLTSFKVSNNSLEGDLPAVLGTYP 402 (832)
Q Consensus 330 ~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 402 (832)
..+. ..+|+.|++++|.+++.+|..+. .+.+|++|+|++|+++...+..+..++
T Consensus 397 ~~~~-------------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~ 457 (636)
T 4eco_A 397 DAKS-------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457 (636)
T ss_dssp CTTC-------------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred hhcc-------------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence 3321 12588888888888888888887 778899999999999854445566788
Q ss_pred CCCEEEccCCcccccCcccccCCC-------CCCeEeccCCcccccCCcccc--cCCCCCcccCcccccEEEccCCcCcc
Q 003307 403 ELKVIDLSLNHLNGFLLPSFFTST-------KLTDLNLSGNNFSGPLPLQEI--QNNPSTGSTQNLSLTSLDLAYNSLSG 473 (832)
Q Consensus 403 ~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~--~~~~~~~~~~~~~L~~L~Ls~N~l~~ 473 (832)
+|++|+|++|+++...+..+.... +|+.|+|++|+++ .+|..+. ... +|+.|+|++|++++
T Consensus 458 ~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~---------~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP---------YLVGIDLSYNSFSK 527 (636)
T ss_dssp CCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT---------TCCEEECCSSCCSS
T ss_pred CCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC---------CcCEEECCCCCCCC
Confidence 999999999999854444444333 8999999999998 6776554 332 48999999999998
Q ss_pred cCChhhhcCCCCCEEeC------cCCcCcccCCCCcc--CCCcEEEcCCCccccccCccC
Q 003307 474 RLLPGISKFHNLVYLNL------SNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENL 525 (832)
Q Consensus 474 ~~p~~l~~l~~L~~L~L------s~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~ 525 (832)
+|..+..+++|+.|+| ++|++.+.+|..+. ++|+.|++++|++ +.+|..+
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 8889999999999999 56889999999886 7899999999999 7788764
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-42 Score=400.89 Aligned_cols=435 Identities=20% Similarity=0.238 Sum_probs=350.5
Q ss_pred CCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCccc
Q 003307 54 PRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSG 132 (832)
Q Consensus 54 ~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~ 132 (832)
.|.|.|+ |+ ++++++.. + |..+ .++|++|+|++|.+++..+ .|..+++|++|+|++|.+++..|..
T Consensus 3 ~C~~~~~-c~--------~~~~~l~~-i-p~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 69 (549)
T 2z81_A 3 SCDASGV-CD--------GRSRSFTS-I-PSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69 (549)
T ss_dssp EECTTSE-EE--------CTTSCCSS-C-CSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred cCCCCce-EE--------CCCCcccc-c-cccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence 4689988 74 34444442 3 2233 2789999999999999888 8999999999999999999999999
Q ss_pred ccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCCEEECccCcCccccCCCCCCCCCC
Q 003307 133 IVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFI 211 (832)
Q Consensus 133 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 211 (832)
|.++++|++|+|++|.+++..|..|+++++|++|+|++|++++. .|..++++++|++|++++|.+.+.++. ..+..+
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l 147 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGL 147 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTC
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH--hhhhcc
Confidence 99999999999999999988887899999999999999999873 567899999999999999996555553 134457
Q ss_pred CCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCC--ChhhhhhCCCC
Q 003307 212 SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSL--PVALLQESSMM 288 (832)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~~~~~~ 288 (832)
++|++|++++|.+++..+.. +..+++|+.|+++.|.+..... .+..+++|++|++++|++++.. |..+. ...++
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~ 224 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD-EVSSP 224 (549)
T ss_dssp CEEEEEEEEETTCCEECTTT--TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSC-CCCCC
T ss_pred cccCeeeccCCcccccChhh--hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchh-hhhhc
Confidence 99999999999999888877 8999999999999999875433 3456899999999999998642 22221 35678
Q ss_pred CCEEECCCCCCCCccCc------cCCCCCCEEEecCCeeccc---------CCCCCCCCCEEecCCCCCcCcc-----hh
Q 003307 289 LSELDLSLNQLEGPVGS------ITSATLKKVNLSSNKLSGS---------LPARVGHCTIVDLSNNRLSGDL-----SR 348 (832)
Q Consensus 289 L~~L~L~~N~l~~~~~~------~~~~~L~~L~L~~N~l~~~---------~p~~l~~l~~L~L~~N~l~~~~-----~~ 348 (832)
|+.|++++|.+++..+. ....+|+.+++++|.+.+. .+..+++++.+++.++.+.... +.
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence 99999999998764331 2346899999999998863 2356788999999999876532 23
Q ss_pred hccccCcccEEEcCCCcCCCCCcccc-cCCCCCCEEEccCCcCCCCcc---cccCCCCCCCEEEccCCcccccCc--ccc
Q 003307 349 MQNWGNYVEDIHLSSNFLTGMVPNQT-SQFLRLTSFKVSNNSLEGDLP---AVLGTYPELKVIDLSLNHLNGFLL--PSF 422 (832)
Q Consensus 349 ~~~~~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~ 422 (832)
.+....+|+.|++++|.++ .+|..+ ..+++|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..+
T Consensus 305 ~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp HHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred hhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence 3344557999999999998 456555 689999999999999998764 347889999999999999988643 568
Q ss_pred cCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCC
Q 003307 423 FTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDG 502 (832)
Q Consensus 423 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 502 (832)
..+++|++|+|++|+++ .+|..+.... +|++|+|++|++++ +|..+ .++|+.|||++|++++.+ ..
T Consensus 384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~---------~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~-~~ 449 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFH-PMPDSCQWPE---------KMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS-LF 449 (549)
T ss_dssp GGCTTCCEEECTTCCCC-CCCSCCCCCT---------TCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC-CC
T ss_pred hcCCCCCEEECCCCCCc-cCChhhcccc---------cccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc-cc
Confidence 89999999999999998 4665443322 49999999999984 34333 368999999999999754 22
Q ss_pred ccCCCcEEEcCCCccccccCc
Q 003307 503 LPNGLKEFNVSFNNLSGVVPE 523 (832)
Q Consensus 503 ~~~~L~~l~ls~N~l~g~~p~ 523 (832)
.++|++|++++|+++ .+|.
T Consensus 450 -l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 450 -LPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp -CTTCCEEECCSSCCS-SCCC
T ss_pred -CChhcEEECCCCccC-cCCC
Confidence 268999999999998 5665
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.8e-42 Score=398.74 Aligned_cols=421 Identities=19% Similarity=0.195 Sum_probs=267.6
Q ss_pred EEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 68 ~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
+.++++++++.+ +| ..+. ++|++|+|++|.+++..+ .|..+++|++|+|++|.|+++.|..|.++++|++|+|++
T Consensus 34 ~~l~ls~~~L~~-ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 688999999886 53 3333 899999999999999887 899999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCC-
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL- 224 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l- 224 (832)
|+|+ .+|.. .+++|++|+|++|++++. +|..|+++++|++|+|++|.+++ ..+..+..+ +|+.|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L-~L~~L~L~~n~l~ 182 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHL-HLSCILLDLVSYH 182 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTS-CEEEEEEEESSCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhc-eeeEEEeeccccc
Confidence 9999 46665 899999999999999874 46899999999999999999984 344455444 559999999999
Q ss_pred -eeccCCCCCCCCCC--CcCEEEccCCcccccCC--CccccccccEEEccccCCC-----CCCChhhhhhCCCCCCEEEC
Q 003307 225 -VGELFPHDGMPYFD--NLEVFDASNNHLVGAIP--SFNFVFSLRILRLGSNQLS-----GSLPVALLQESSMMLSELDL 294 (832)
Q Consensus 225 -~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~~~~~~L~~L~L 294 (832)
++..+.. +..+. .| .++++.|.+.+.++ .+..+++|+.|++++|+.. +.+ ..+ ...+.|+.+++
T Consensus 183 ~~~~~~~~--l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l--~~l~~L~~L~L 256 (562)
T 3a79_B 183 IKGGETES--LQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SEL--TRGPTLLNVTL 256 (562)
T ss_dssp CCSSSCCE--EEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHH--HSCSSCEEEEE
T ss_pred ccccCccc--ccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHH--hccCcceEEEe
Confidence 6655544 54433 23 56888888887776 5677888999999988521 111 122 34566777777
Q ss_pred CCCCCCCc-----cCccCCCCCCEEEecCCeecccCCCCC-----CCCC-----------------------------EE
Q 003307 295 SLNQLEGP-----VGSITSATLKKVNLSSNKLSGSLPARV-----GHCT-----------------------------IV 335 (832)
Q Consensus 295 ~~N~l~~~-----~~~~~~~~L~~L~L~~N~l~~~~p~~l-----~~l~-----------------------------~L 335 (832)
.++.+.+. .+.....+|++|++++|+++|.+|..+ .+++ .|
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 66665532 222333477788888888877777665 4444 33
Q ss_pred ecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCC--cccccCCCCCCCEEEccCCc
Q 003307 336 DLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGD--LPAVLGTYPELKVIDLSLNH 413 (832)
Q Consensus 336 ~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~ 413 (832)
++++|.+..... ....++|++|++++|.+++.+|..+..+++|++|++++|++++. +|..+..+++|++|++++|+
T Consensus 337 ~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 337 SISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 333333322110 01223455555555555544444455555555555555555432 23344445555555555555
Q ss_pred ccc-cCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcC
Q 003307 414 LNG-FLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSN 492 (832)
Q Consensus 414 l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 492 (832)
+++ ..+..+..+++|+.|+|++|++++.+|.... .+|++|+|++|+++ .+|..+..+++|+.|+|++
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-----------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-----------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCS
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-----------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCC
Confidence 544 2222344445555555555555443332211 02455555555554 3444444555555555555
Q ss_pred CcCcccCCCC-cc--CCCcEEEcCCCccccc
Q 003307 493 NKFEGSIPDG-LP--NGLKEFNVSFNNLSGV 520 (832)
Q Consensus 493 N~l~g~ip~~-~~--~~L~~l~ls~N~l~g~ 520 (832)
|+++ .+|.. +. ++|+.|++++|+++|.
T Consensus 483 N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 483 NQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 5555 23332 22 3445555555554443
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-41 Score=380.99 Aligned_cols=367 Identities=18% Similarity=0.159 Sum_probs=275.5
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccC-cccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLI-PSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
++|++|||++|.+++..+ .|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 789999999999999877 8999999999999999997554 67899999999999999999998899999999999999
Q ss_pred CcCCCCCCccchh--hhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCC--CCcCEE
Q 003307 168 LRANRFGGDIMHL--LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYF--DNLEVF 243 (832)
Q Consensus 168 L~~N~l~~~~~~~--l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l--~~L~~L 243 (832)
|++|++++..+.. +..+++|++|+|++|++++..|..+ +..+++|++|++++|.+++..+.. +..+ .+|+.|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~~~L~~L 185 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF--FLNMRRFHVLDLTFNKVKSICEED--LLNFQGKHFTLL 185 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG--GGGCTTCCEEECTTCCBSCCCTTT--SGGGTTCEEEEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc--cCCCCcccEEeCCCCcccccChhh--hhcccccccccc
Confidence 9999998866655 8999999999999999987666541 334688999999999998766655 5544 688889
Q ss_pred EccCCcccccCC-C--------ccccccccEEEccccCCCCCCChhhhhh-CCCCCCEEECCCCCCCCccCccCCCCCCE
Q 003307 244 DASNNHLVGAIP-S--------FNFVFSLRILRLGSNQLSGSLPVALLQE-SSMMLSELDLSLNQLEGPVGSITSATLKK 313 (832)
Q Consensus 244 ~Ls~N~l~~~~~-~--------~~~l~~L~~L~L~~N~l~~~~p~~~~~~-~~~~L~~L~L~~N~l~~~~~~~~~~~L~~ 313 (832)
++++|.+.+..+ . +..+++|++|++++|++++..|..+... ...+|+.|++++|.+.+...
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------- 256 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------- 256 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc---------
Confidence 999998886554 2 2355788888888888887777666432 12456666666665443210
Q ss_pred EEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCC
Q 003307 314 VNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGD 393 (832)
Q Consensus 314 L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 393 (832)
..+.+.+..+..+..+ ...+|+.|++++|.+++..|..+..+++|++|+|++|++++.
T Consensus 257 ---~~~~~~~~~~~~~~~~-------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 257 ---GHTNFKDPDNFTFKGL-------------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp ---TCCSSCCCCTTTTGGG-------------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ---chhhhccCcccccccc-------------------cccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 0111111111000000 113688888888888888888888888888888888888877
Q ss_pred cccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcc
Q 003307 394 LPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG 473 (832)
Q Consensus 394 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 473 (832)
.|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+.... +|++|+|++|++++
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP---------NLKELALDTNQLKS 385 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT---------TCCEEECCSSCCSC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc---------cccEEECCCCcccc
Confidence 777888888888888888888887777888888888888888887766665444332 37777777777776
Q ss_pred cCChhhhcCCCCCEEeCcCCcCcccCC
Q 003307 474 RLLPGISKFHNLVYLNLSNNKFEGSIP 500 (832)
Q Consensus 474 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip 500 (832)
..+..+..+++|+.|+|++|++++.+|
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCHhHhccCCcccEEEccCCCcccCCC
Confidence 655566777777777777777777766
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=390.98 Aligned_cols=411 Identities=21% Similarity=0.242 Sum_probs=347.6
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
.+++.|+++++.+.+.. +..+.++++|++|+|++|++++..| .|+.+++|++|+|++|+|+. +|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccC-hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEe
Confidence 57899999999998754 5689999999999999999999888 89999999999999999995 5655 899999999
Q ss_pred cccccccc-cCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC--CEEECccCcC--ccccCCCCCCCC---------
Q 003307 144 ISSNSFEG-TFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV--VHVDLSNNQF--SGSLDLGLGDSS--------- 209 (832)
Q Consensus 144 Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~Ls~N~l--~~~~~~~~~~~~--------- 209 (832)
|++|.+++ .+|..|+++++|++|+|++|++++ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 99999997 478999999999999999999986 457778888 9999999999 777777666543
Q ss_pred --------------CCCCccEEECCCCC-------CeeccCCCCCCCCCCCcCEEEccCCcccccCC-C---cccccccc
Q 003307 210 --------------FISSIQYLNISENS-------LVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-S---FNFVFSLR 264 (832)
Q Consensus 210 --------------~l~~L~~L~L~~N~-------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~---~~~l~~L~ 264 (832)
.+++|+.|++++|. +.+.++ . +..+++|+.|++++|.+++..+ . ....++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~--l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-K--LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-G--GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-h--hccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 47889999999987 666555 3 7889999999999999876433 1 12246899
Q ss_pred EEEccccCCCCCCChhhhh---hCCCCCCEEECCCCCCCCccC--cc----CCCCCCEEEecCCeecccC-CCCCCCCCE
Q 003307 265 ILRLGSNQLSGSLPVALLQ---ESSMMLSELDLSLNQLEGPVG--SI----TSATLKKVNLSSNKLSGSL-PARVGHCTI 334 (832)
Q Consensus 265 ~L~L~~N~l~~~~p~~~~~---~~~~~L~~L~L~~N~l~~~~~--~~----~~~~L~~L~L~~N~l~~~~-p~~l~~l~~ 334 (832)
+|++++|+++|.+|..++. ..++.|+.++++.|.+ .+| .. ...+|+.|++++|.+.... +..+.+|++
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 328 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccE
Confidence 9999999999999987632 3577899999999998 233 11 1257999999999998654 367889999
Q ss_pred EecCCCCCcCcchhhccccCcccEEEcCCCcCCC--CCcccccCCCCCCEEEccCCcCCCCccc-ccCCCCCCCEEEccC
Q 003307 335 VDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG--MVPNQTSQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSL 411 (832)
Q Consensus 335 L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~ 411 (832)
|++++|++++..+..+...++|+.|+|++|.+++ .+|..+..+++|++|++++|++++.+|. .+..+++|+.|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 9999999999777777777789999999999997 5668899999999999999999986665 488899999999999
Q ss_pred CcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChh-hhcCCCCCEEeC
Q 003307 412 NHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG-ISKFHNLVYLNL 490 (832)
Q Consensus 412 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L 490 (832)
|++++..|..+. ++|+.|+|++|+++ .+|....... +|++|+|++|+++. +|.. +..+++|+.|+|
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~---------~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE---------ALQELNVASNQLKS-VPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT---------TCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC---------CCCEEECCCCcCCc-cCHHHhccCCcccEEEC
Confidence 999988777664 79999999999998 7777665443 49999999999995 5554 999999999999
Q ss_pred cCCcCcccCC
Q 003307 491 SNNKFEGSIP 500 (832)
Q Consensus 491 s~N~l~g~ip 500 (832)
++|++++.++
T Consensus 476 ~~N~~~c~c~ 485 (520)
T 2z7x_B 476 HTNPWDCSCP 485 (520)
T ss_dssp CSSCBCCCHH
T ss_pred cCCCCcccCC
Confidence 9999998765
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7e-40 Score=387.06 Aligned_cols=458 Identities=20% Similarity=0.150 Sum_probs=334.7
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
..++.|+|+++.+++. ++..|.++++|++|||++|+|++..+ .|.++++|++|+|++|+|+++.+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3688899999888754 35678899999999999999998877 789999999999999999988888899999999999
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCCEEECccCcCccccCCCCCCCCCCC-CccEEECCC
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFIS-SIQYLNISE 221 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-~L~~L~L~~ 221 (832)
|++|+|++..+..|+++++|++|+|++|.+++. .|..++.+++|++|+|++|++++..+..+..+..++ .+..++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999999987777899999999999999998764 578888899999999999999876665554433332 234566777
Q ss_pred CCCeeccCCCCCCCCCCCcCEEEccCCccc--------------------------------------------------
Q 003307 222 NSLVGELFPHDGMPYFDNLEVFDASNNHLV-------------------------------------------------- 251 (832)
Q Consensus 222 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------------------------------------- 251 (832)
|.+....+.. + ....++.+++.+|...
T Consensus 211 n~l~~i~~~~--~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 211 NPMNFIQPGA--F-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CCCCEECTTT--T-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred CcccccCccc--c-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 7665432221 1 1122333333333211
Q ss_pred ---------ccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeec
Q 003307 252 ---------GAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLS 322 (832)
Q Consensus 252 ---------~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~ 322 (832)
+....+....+++.+++.+|.+....+ + .....++.|++.+|.+.+... .....|+.+++..|.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~--~~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--F--SYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--G--GSCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccc--c--ccchhhhhhhcccccccCcCc-ccchhhhhcccccccCC
Confidence 011123344566667777766653222 2 345678999999998875433 34467889999998876
Q ss_pred ccCCC-CCCCCCEEecCCCCCcCc--chhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcc-ccc
Q 003307 323 GSLPA-RVGHCTIVDLSNNRLSGD--LSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLP-AVL 398 (832)
Q Consensus 323 ~~~p~-~l~~l~~L~L~~N~l~~~--~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~ 398 (832)
..... .+.+++.+++++|.+... .+.......+|+.+++..|.+... +..+..+++|+.++++.|.+....+ ..+
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccc
Confidence 54432 467888999999988643 233333445688999998887754 4567788899999998887765543 567
Q ss_pred CCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccc-cCCcccccCCCCCcccCcccccEEEccCCcCcccCCh
Q 003307 399 GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSG-PLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLP 477 (832)
Q Consensus 399 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~ 477 (832)
..+++++.++++.|.+.+..+..+..++.|+.|+|++|++.. .+|..+.... +|++|||++|+|++.+|.
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~---------~L~~L~Ls~N~L~~l~~~ 512 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---------NLTFLDLSQCQLEQLSPT 512 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT---------TCCEEECTTSCCCEECTT
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc---------ccCEEECCCCccCCcChH
Confidence 788899999999999998888888888999999999987543 3444333332 488999999999988888
Q ss_pred hhhcCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCCCC-CC--CCCCCCCCC
Q 003307 478 GISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNFPD-SA--FHPGNSLLT 541 (832)
Q Consensus 478 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~~~-~~--~~~~n~~~~ 541 (832)
.|.++++|+.|+|++|+|++..|..+. ++|++|++++|+|++..|..+..++. .. ...+|+..|
T Consensus 513 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 899999999999999999877776665 68899999999999988888766532 11 123677666
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-41 Score=402.42 Aligned_cols=372 Identities=18% Similarity=0.208 Sum_probs=310.8
Q ss_pred CCCCcccCC-CCCCCCCCCEEECCCCCCCc-----------------cCccccc--CCCCCCEEEcccccccccCCCCCC
Q 003307 99 NNQLMGNIT-DIGSIQSLEFLDLSHNLFHG-----------------LIPSGIV--SLKNLMLLNISSNSFEGTFPSGFG 158 (832)
Q Consensus 99 ~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~ 158 (832)
.|++++ +| .|+++++|++|+|++|.|++ .+|..++ ++++|++|+|++|.+.+.+|..|+
T Consensus 434 ~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 388888 66 89999999999999999998 3888887 999999999999999999999999
Q ss_pred CCCCCCEeeCcCCC-CCC-ccchhhhcCC-------CCCEEECccCcCccccCC--CCCCCCCCCCccEEECCCCCCeec
Q 003307 159 GLGKLKYLDLRANR-FGG-DIMHLLSQLG-------SVVHVDLSNNQFSGSLDL--GLGDSSFISSIQYLNISENSLVGE 227 (832)
Q Consensus 159 ~l~~L~~L~L~~N~-l~~-~~~~~l~~l~-------~L~~L~Ls~N~l~~~~~~--~~~~~~~l~~L~~L~L~~N~l~~~ 227 (832)
++++|++|+|++|+ +++ .+|..++.++ +|++|+|++|+++ .+|. .++ .+++|+.|+|++|.++ .
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~---~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ---KMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT---TCTTCCEEECTTSCCC-B
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh---cCCCCCEEECCCCCcc-c
Confidence 99999999999998 998 8888777766 9999999999999 6776 554 4589999999999998 6
Q ss_pred cCCCCCCCCCCCcCEEEccCCcccccCC-Ccccccc-ccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCc
Q 003307 228 LFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFS-LRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGS 305 (832)
Q Consensus 228 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~ 305 (832)
+| . +..+++|+.|++++|.++ .+| .+..+++ |+.|+|++|+++ .+|..+.....++|+.|++++|++.+.++.
T Consensus 588 lp-~--~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 588 LE-A--FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp CC-C--CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred ch-h--hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 66 4 899999999999999999 566 8899999 999999999999 788766433345599999999999987663
Q ss_pred cC-------CCCCCEEEecCCeecccCCC----CCCCCCEEecCCCCCcCcchhhcccc-------CcccEEEcCCCcCC
Q 003307 306 IT-------SATLKKVNLSSNKLSGSLPA----RVGHCTIVDLSNNRLSGDLSRMQNWG-------NYVEDIHLSSNFLT 367 (832)
Q Consensus 306 ~~-------~~~L~~L~L~~N~l~~~~p~----~l~~l~~L~L~~N~l~~~~~~~~~~~-------~~L~~L~Ls~N~l~ 367 (832)
.. ..+|+.|+|++|+++ .+|. .+.+|+.|+|++|+++......+... ++|+.|+|++|.|+
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc
Confidence 32 248999999999999 5664 45789999999999996666555433 27999999999999
Q ss_pred CCCccccc--CCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccC------CcccccCcccccCCCCCCeEeccCCccc
Q 003307 368 GMVPNQTS--QFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSL------NHLNGFLLPSFFTSTKLTDLNLSGNNFS 439 (832)
Q Consensus 368 ~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 439 (832)
.+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|++
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 6788887 99999999999999997 798999999999999977 777788888888888888888888888
Q ss_pred ccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCc
Q 003307 440 GPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFE 496 (832)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 496 (832)
+.+|..+.. +|+.|||++|++....+..+.....+..+.|.+|++.
T Consensus 819 ~~Ip~~l~~-----------~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 819 RKVDEKLTP-----------QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CBCCSCCCS-----------SSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CccCHhhcC-----------CCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 667755331 3777888888777666665555555555666666554
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-39 Score=384.80 Aligned_cols=441 Identities=18% Similarity=0.140 Sum_probs=347.2
Q ss_pred EEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccc
Q 003307 69 SIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147 (832)
Q Consensus 69 ~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 147 (832)
.+++++.+|+. + |..+. +++++|||++|+|++..+ .|.++++|++|||++|+|+++.|.+|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~~-v-P~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYK-I-PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSS-C-CSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCc-c-CCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 35677777663 3 22221 479999999999999888 8999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccc-cCCCCCCCCCCCCccEEECCCCCCee
Q 003307 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGS-LDLGLGDSSFISSIQYLNISENSLVG 226 (832)
Q Consensus 148 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~ 226 (832)
+|++..+..|.++++|++|+|++|++++..+..|+++++|++|+|++|.+++. +|..+ ..+++|++|++++|++++
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF---SNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG---GGCTTCCEEECCSSCCCE
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh---ccchhhhhhcccCccccc
Confidence 99988888999999999999999999998888999999999999999999753 34333 346899999999999987
Q ss_pred ccCCCCCCCCCCC----cCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhh-------------------
Q 003307 227 ELFPHDGMPYFDN----LEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQ------------------- 283 (832)
Q Consensus 227 ~~~~~~~~~~l~~----L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------------------- 283 (832)
..+.. +..+.+ +..++++.|.+....+.......++.+++.+|.....++...+.
T Consensus 188 ~~~~~--l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 265 (635)
T 4g8a_A 188 IYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 265 (635)
T ss_dssp ECGGG--GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred ccccc--ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence 65544 544433 34789999999877765445556677777776554222111110
Q ss_pred -------------------------------------hCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCC
Q 003307 284 -------------------------------------ESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLP 326 (832)
Q Consensus 284 -------------------------------------~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p 326 (832)
.....++.+++..+.+...........++.|++.+|.+.+..+
T Consensus 266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC
T ss_pred ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc
Confidence 1122344555555555444444445578889999998887777
Q ss_pred CCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCC--CCcccccCCCCCCEEEccCCcCCCCcccccCCCCCC
Q 003307 327 ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG--MVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPEL 404 (832)
Q Consensus 327 ~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 404 (832)
..+..++.+++..|.+....... ..++|+.|++++|.+.. ..+..+..+.+|++|+++.|.+.. .+..+..+++|
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L 422 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL 422 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCCCC--BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC
T ss_pred ccchhhhhcccccccCCCCcccc--cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc
Confidence 77888888999888877654322 34579999999999864 456677788999999999999874 56678889999
Q ss_pred CEEEccCCcccccCc-ccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcC-cccCChhhhcC
Q 003307 405 KVIDLSLNHLNGFLL-PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSL-SGRLLPGISKF 482 (832)
Q Consensus 405 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l-~~~~p~~l~~l 482 (832)
+.++++.|.+....+ ..|..+.+++.++++.|.+++..+....... +|+.|+|++|.+ .+.+|..|..+
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~---------~L~~L~Ls~N~~~~~~~~~~~~~l 493 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS---------SLEVLKMAGNSFQENFLPDIFTEL 493 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT---------TCCEEECTTCEEGGGEECSCCTTC
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccch---------hhhhhhhhhcccccccCchhhhhc
Confidence 999999998876654 4578899999999999999987765544333 499999999985 45678889999
Q ss_pred CCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCCCC
Q 003307 483 HNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNFPD 530 (832)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~~~ 530 (832)
++|+.|||++|+|++.+|..+. .+|++|++++|+|++..|..|..++.
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 9999999999999998888876 78999999999999998887765543
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-39 Score=364.05 Aligned_cols=392 Identities=22% Similarity=0.230 Sum_probs=258.3
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCC-------------CEEECCCCCCCccCc
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSL-------------EFLDLSHNLFHGLIP 130 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L-------------~~L~Ls~N~l~~~~p 130 (832)
.+++.++++++++ |.+ |+.++++++|++|++++|.+.|.+| .++.+.+| ++|++++|.+++. |
T Consensus 11 ~~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred ccchhhhcccCch-hhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence 4578888999888 788 5679999999999999999998888 88888765 9999999999874 3
Q ss_pred ccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCC
Q 003307 131 SGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSF 210 (832)
Q Consensus 131 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 210 (832)
. -.++|++|++++|.+++ +|.. +++|++|++++|++++... . .++|++|++++|++++ +| . +..
T Consensus 88 ~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~---~~~L~~L~L~~n~l~~-lp-~---~~~ 151 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLEK-LP-E---LQN 151 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCSS-CC-C---CTT
T ss_pred C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-C---CCCCCEEECcCCCCCC-Cc-c---cCC
Confidence 3 24789999999999997 6654 3789999999999886322 1 2689999999999985 55 2 556
Q ss_pred CCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCC
Q 003307 211 ISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLS 290 (832)
Q Consensus 211 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~ 290 (832)
+++|++|++++|++++ ++.. ..+|+.|++++|++++ +|.+..+++|+.|++++|++++ +|.. ..+|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~-----~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~-----~~~L~ 218 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL-----PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL-----PLSLE 218 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC-----CTTCC
T ss_pred CCCCCEEECCCCcCcc-cCCC-----cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC-----cCccc
Confidence 7899999999999875 3332 3589999999999987 5678889999999999999985 5532 24799
Q ss_pred EEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCC
Q 003307 291 ELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV 370 (832)
Q Consensus 291 ~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 370 (832)
+|++++|.++.........+|++|++++|++++ +|..+.+++.|++++|++++.... ..+|+.|++++|.+++.
T Consensus 219 ~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l- 292 (454)
T 1jl5_A 219 SIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGL- 292 (454)
T ss_dssp EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEE-
T ss_pred EEECcCCcCCcccccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcc-
Confidence 999999998854433445689999999999985 666678889999999998874432 24789999999998863
Q ss_pred cccccCCCCCCEEEccCCcCCCCcccccCCC-CCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccC
Q 003307 371 PNQTSQFLRLTSFKVSNNSLEGDLPAVLGTY-PELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQN 449 (832)
Q Consensus 371 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 449 (832)
|.. .++|++|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|+.|++++|++++ +|. . .
T Consensus 293 ~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-~--l 356 (454)
T 1jl5_A 293 SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-L--P 356 (454)
T ss_dssp SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-C--C
T ss_pred cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-h--h
Confidence 211 2678999999999885 22 23 488999999999987 4443 5789999999998884 554 1 1
Q ss_pred CCCCcccCcccccEEEccCCcCcc--cCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCcccc--ccCccC
Q 003307 450 NPSTGSTQNLSLTSLDLAYNSLSG--RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSG--VVPENL 525 (832)
Q Consensus 450 ~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g--~~p~~~ 525 (832)
.+|++|++++|++++ .+|..+..+ +.|.+.|.+|.. ..+|+.|++++|++++ .+|..+
T Consensus 357 ---------~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~-~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 357 ---------QNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL-PQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp ---------TTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---------------------------------
T ss_pred ---------hhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc-cCcCCEEECCCCcCCccccchhhH
Confidence 148899999999988 677665543 346666666653 3567777777777776 667665
Q ss_pred CCC
Q 003307 526 RNF 528 (832)
Q Consensus 526 ~~~ 528 (832)
..+
T Consensus 419 ~~L 421 (454)
T 1jl5_A 419 EDL 421 (454)
T ss_dssp ---
T ss_pred hhe
Confidence 444
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.7e-39 Score=362.17 Aligned_cols=387 Identities=19% Similarity=0.182 Sum_probs=266.7
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccC-CCCCCCCCCCCEeeCcCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF-PSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N 171 (832)
+.++.+++.++..+. + .++|++|+|++|.|++..|..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 457777777775443 2 378999999999999888889999999999999999987544 667899999999999999
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++++..|..|+++++|++|+|++|.+++.++.. ..+..+++|++|+|++|.+++..+.. .+..+++|+.|++++|.++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKKIQPAS-FFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS-STTTTCTTCCEEECCSSBCCSCCCCG-GGGGCTTCCEEECTTCCBS
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCc-ccccCcccCCEEECCCCccCccCccc-ccCCCCcccEEeCCCCccc
Confidence 998888888999999999999999888644332 11233456666666666655433221 1344555555555555555
Q ss_pred ccCC-Ccccc--ccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCC
Q 003307 252 GAIP-SFNFV--FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPAR 328 (832)
Q Consensus 252 ~~~~-~~~~l--~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~ 328 (832)
+..+ .+..+ .+|+.|++++|.+.+..+..+...... ......+|++|++++|++++..|..
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~----------------~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG----------------NPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC----------------CTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccc----------------cccccceeeeEecCCCcccccchhh
Confidence 5444 33333 345555555555543222111000000 0001123444444444444333321
Q ss_pred C------CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccC--CCCCCEEEccCCcCCCCcccccCC
Q 003307 329 V------GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQ--FLRLTSFKVSNNSLEGDLPAVLGT 400 (832)
Q Consensus 329 l------~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~ 400 (832)
+ .+++.|++++|.+.+.. +..+.+.+..+..+.. .++|++|++++|.+++..|..+..
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred hhccccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 1 23333444433332210 1112222223333333 368999999999999999999999
Q ss_pred CCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhh
Q 003307 401 YPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGIS 480 (832)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 480 (832)
+++|++|++++|++++..+..|..+++|++|+|++|++++..|..+.... +|++|+|++|++++..|..+.
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------~L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD---------KLEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT---------TCCEEECCSSCCCEECTTTTT
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc---------cCCEEECCCCcccccChhhcc
Confidence 99999999999999999999999999999999999999877666554443 499999999999999999999
Q ss_pred cCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCc
Q 003307 481 KFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPE 523 (832)
Q Consensus 481 ~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~ 523 (832)
.+++|++|+|++|++++..+..+. ++|+.|++++|+++|.+|.
T Consensus 369 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999975554444 7899999999999999884
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-39 Score=378.85 Aligned_cols=413 Identities=19% Similarity=0.216 Sum_probs=313.5
Q ss_pred CCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEE
Q 003307 64 NGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142 (832)
Q Consensus 64 ~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 142 (832)
...++.|+++++.+.+.. +..+.++++|++|+|++|++++..| .|..+++|++|||++|.|+. +|.. .+++|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEE
T ss_pred CCCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEE
Confidence 357899999999998754 5789999999999999999999988 89999999999999999995 4554 89999999
Q ss_pred Eccccccccc-CCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC--CEEECccCcC--ccccCCCCCCCCCCCCccEE
Q 003307 143 NISSNSFEGT-FPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV--VHVDLSNNQF--SGSLDLGLGDSSFISSIQYL 217 (832)
Q Consensus 143 ~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~Ls~N~l--~~~~~~~~~~~~~l~~L~~L 217 (832)
+|++|++++. +|..|+++++|++|+|++|++++. .+..+++| ++|++++|.+ ++..|..+..+.. ..+ .+
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l-~l 201 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-TVL-HL 201 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-EEE-EE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCc-ceE-EE
Confidence 9999999974 468999999999999999999864 45555555 9999999999 7776666554321 122 44
Q ss_pred ECCCCCCeeccCCCCCCCCCCCcCEEEccCCc-----ccccCCCccc---------------------------cccccE
Q 003307 218 NISENSLVGELFPHDGMPYFDNLEVFDASNNH-----LVGAIPSFNF---------------------------VFSLRI 265 (832)
Q Consensus 218 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~---------------------------l~~L~~ 265 (832)
++++|.+.+.++.. .+..+++|+.+++++|. +.+.++.+.. ..+|++
T Consensus 202 ~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 202 VFHPNSLFSVQVNM-SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EECSSSCCCCCCEE-EESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EecCccchhhhhhh-cccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 56666655433321 23455566666666553 1111111222 236777
Q ss_pred EEccccCCCCCCChhhhhh---CCCCCCEEECCCCCCCCccCc------cCCCCCCEEEecCCeecccCC-CCCCCCCEE
Q 003307 266 LRLGSNQLSGSLPVALLQE---SSMMLSELDLSLNQLEGPVGS------ITSATLKKVNLSSNKLSGSLP-ARVGHCTIV 335 (832)
Q Consensus 266 L~L~~N~l~~~~p~~~~~~---~~~~L~~L~L~~N~l~~~~~~------~~~~~L~~L~L~~N~l~~~~p-~~l~~l~~L 335 (832)
|++++|+++|.+|..++.. .+..|+.+++..|.+ .+|. ....+|+.|++++|.+..... ..+.+++.|
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 358 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred EEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence 7777777777776655322 223333344444444 1110 112469999999999875443 677899999
Q ss_pred ecCCCCCcCcchhhccccCcccEEEcCCCcCCCCC--cccccCCCCCCEEEccCCcCCCCccc-ccCCCCCCCEEEccCC
Q 003307 336 DLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV--PNQTSQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLN 412 (832)
Q Consensus 336 ~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N 412 (832)
++++|++++.++..+...++|+.|+|++|.+++.. |..+..+++|++|++++|++++.+|. .+..+++|++|++++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 99999999987777777778999999999999743 56789999999999999999985554 5888999999999999
Q ss_pred cccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChh-hhcCCCCCEEeCc
Q 003307 413 HLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLS 491 (832)
Q Consensus 413 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls 491 (832)
++++..|..+. ++|+.|+|++|+++ .+|....... +|++|+|++|+|+. +|.. +..+++|+.|+|+
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~---------~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQ---------ALQELNVASNQLKS-VPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSC---------CCSEEECCSSCCCC-CCTTSTTTCTTCCCEECC
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCC---------CCCEEECCCCCCCC-CCHHHHhcCCCCCEEEec
Confidence 99987766554 79999999999998 5666554333 49999999999995 5555 9999999999999
Q ss_pred CCcCcccCCC
Q 003307 492 NNKFEGSIPD 501 (832)
Q Consensus 492 ~N~l~g~ip~ 501 (832)
+|+++|.+|.
T Consensus 506 ~N~~~c~c~~ 515 (562)
T 3a79_B 506 DNPWDCTCPG 515 (562)
T ss_dssp SCCBCCCHHH
T ss_pred CCCcCCCcch
Confidence 9999987663
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.8e-38 Score=352.64 Aligned_cols=361 Identities=20% Similarity=0.190 Sum_probs=290.9
Q ss_pred cccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCC
Q 003307 83 FPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGK 162 (832)
Q Consensus 83 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 162 (832)
+..++++++|++|++++|.+++. |.++.+++|++|+|++|.|+++ | ++.+++|++|+|++|.|++. + |+++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 34677889999999999999875 5788999999999999999976 3 88999999999999999975 3 889999
Q ss_pred CCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCE
Q 003307 163 LKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEV 242 (832)
Q Consensus 163 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 242 (832)
|++|+|++|++++. + ++.+++|++|++++|++++. + +..+++|++|++++|...+.+ . +..+++|+.
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~-----l~~l~~L~~L~l~~n~~~~~~--~--~~~l~~L~~ 174 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D-----VSHNTQLTELDCHLNKKITKL--D--VTPQTQLTT 174 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C-----CTTCTTCCEEECTTCSCCCCC--C--CTTCTTCCE
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c-----cccCCcCCEEECCCCCccccc--c--cccCCcCCE
Confidence 99999999999875 3 88999999999999999863 2 445689999999999765554 2 778899999
Q ss_pred EEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeec
Q 003307 243 FDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLS 322 (832)
Q Consensus 243 L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~ 322 (832)
|++++|++++. | +..+++|+.|++++|++++. + + ..+++|+.|++++|++++ +|....++|+.|++++|+++
T Consensus 175 L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~-~--l--~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 175 LDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKL-D--L--NQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCC-C--C--TTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCS
T ss_pred EECCCCcccee-c-cccCCCCCEEECcCCcCCee-c--c--ccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCCcCC
Confidence 99999999874 4 78889999999999999864 3 3 567889999999999998 45555678999999999999
Q ss_pred ccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCC
Q 003307 323 GSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYP 402 (832)
Q Consensus 323 ~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 402 (832)
+..+..+.+|+.|+++.| +|+.|++++|.+.+.+| +..+++|+.|++++|.+.+.+|. ..+
T Consensus 247 ~~~~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~ 307 (457)
T 3bz5_A 247 ELDVSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAA 307 (457)
T ss_dssp CCCCTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTC
T ss_pred CcCHHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCC
Confidence 887778889999998876 46788999999888777 56789999999999998877774 345
Q ss_pred CCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcC
Q 003307 403 ELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKF 482 (832)
Q Consensus 403 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l 482 (832)
+|+.|++++| ++|+.|++++|+|++. + +..+. +|+.||+++|+|++ +
T Consensus 308 ~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~---------~L~~L~l~~N~l~~--------l 354 (457)
T 3bz5_A 308 GITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNT---------KLKSLSCVNAHIQD--------F 354 (457)
T ss_dssp CCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCT---------TCSEEECCSSCCCB--------C
T ss_pred cceEechhhc-------------ccCCEEECCCCccccc-c--cccCC---------cCcEEECCCCCCCC--------c
Confidence 5666665554 5788888888888873 3 22222 38888888888876 3
Q ss_pred CCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCccccccCccCC
Q 003307 483 HNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLR 526 (832)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g~~p~~~~ 526 (832)
+.|..|++++|.++|. + -...+..+++++|+++|.+|..+.
T Consensus 355 ~~L~~L~l~~n~l~g~-~--~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 355 SSVGKIPALNNNFEAE-G--QTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp TTGGGSSGGGTSEEEE-E--EEEECCCBCCBTTBEEEECCTTCB
T ss_pred cccccccccCCcEEec-c--eeeecCccccccCcEEEEcChhHh
Confidence 4566778888888876 1 113577788889999988887653
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.5e-39 Score=343.46 Aligned_cols=290 Identities=25% Similarity=0.424 Sum_probs=255.2
Q ss_pred CCHHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCccccCC----CcEEEEEeCCCCCcc--ccCcccccCC
Q 003307 16 LGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTN----GYVTSIMLNDMGLVG--NFSFPTIIGL 89 (832)
Q Consensus 16 ~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~gv~C~~----~~v~~l~l~~~~l~g--~~~~~~~~~l 89 (832)
+.++|++||++||+++ .+|. .+++|..+ .++|.|.|.||.|+. ++|+.|+|+++++.| .+ ++.+.++
T Consensus 3 c~~~~~~aL~~~k~~~-~~~~--~l~~W~~~---~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~-~~~l~~l 75 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDL-GNPT--TLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI-PSSLANL 75 (313)
T ss_dssp SCHHHHHHHHHHHHHT-TCCG--GGTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC-CGGGGGC
T ss_pred CCHHHHHHHHHHHHhc-CCcc--cccCCCCC---CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc-ChhHhCC
Confidence 4578999999999999 5665 48899753 578866699999973 789999999999998 77 5789999
Q ss_pred CCCCEEEcCC-CCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 90 KMLCNVSVSN-NQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 90 ~~L~~L~Ls~-n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
++|++|+|++ |.+.+.+| .|+.+++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..|.++++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 9999999995 99999888 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCccchhhhcCC-CCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEcc
Q 003307 168 LRANRFGGDIMHLLSQLG-SVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246 (832)
Q Consensus 168 L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 246 (832)
|++|++++.+|..+..++ +|++|+|++|++++.+|..+..+ + |+.|++++|.+++..+.. +..+++|+.|+++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l---~-L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---N-LAFVDLSRNMLEGDASVL--FGSDKNTQKIHLA 229 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC---C-CSEEECCSSEEEECCGGG--CCTTSCCSEEECC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC---c-ccEEECcCCcccCcCCHH--HhcCCCCCEEECC
Confidence 999999999999999998 99999999999999888877665 3 999999999999877766 8899999999999
Q ss_pred CCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccC-CCCCCEEEecCCe
Q 003307 247 NNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSIT-SATLKKVNLSSNK 320 (832)
Q Consensus 247 ~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~-~~~L~~L~L~~N~ 320 (832)
+|.+++.++.+..+++|++|+|++|++++.+|..+ ..+++|++|++++|++++.+|... ..+|+.+++++|+
T Consensus 230 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp SSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CCceeeecCcccccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 99999888888889999999999999998899887 567788888888888877666432 3466777777776
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5e-38 Score=352.85 Aligned_cols=373 Identities=23% Similarity=0.300 Sum_probs=248.9
Q ss_pred cCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCC-------------CEEEccccccccc
Q 003307 87 IGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNL-------------MLLNISSNSFEGT 152 (832)
Q Consensus 87 ~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~Ls~N~l~~~ 152 (832)
...++|++|++++|.+ +.+| +++++++|++|++++|.++|.+|..++++.+| ++|++++|.+++
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 3468899999999999 6777 89999999999999999999999999988865 999999999886
Q ss_pred CCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCC
Q 003307 153 FPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHD 232 (832)
Q Consensus 153 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 232 (832)
+|.. .++|++|++++|++++ +|.. +++|++|++++|++++. + .+ .++|++|++++|.+++ ++ .
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~----~~--~~~L~~L~L~~n~l~~-lp-~- 148 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-S----DL--PPLLEYLGVSNNQLEK-LP-E- 148 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-C----SC--CTTCCEEECCSSCCSS-CC-C-
T ss_pred CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-c----CC--CCCCCEEECcCCCCCC-Cc-c-
Confidence 4442 3789999999999987 4543 47899999999988842 2 11 1689999999999886 44 3
Q ss_pred CCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCC
Q 003307 233 GMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLK 312 (832)
Q Consensus 233 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~ 312 (832)
+..+++|+.|++++|++++ +|.. ..+|++|++++|++++ +| .+ ..+++|++|++++|++++.... ..+|+
T Consensus 149 -~~~l~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~l~~-l~-~~--~~l~~L~~L~l~~N~l~~l~~~--~~~L~ 218 (454)
T 1jl5_A 149 -LQNSSFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQLEE-LP-EL--QNLPFLTAIYADNNSLKKLPDL--PLSLE 218 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSS-CC-CC--TTCTTCCEEECCSSCCSSCCCC--CTTCC
T ss_pred -cCCCCCCCEEECCCCcCcc-cCCC--cccccEEECcCCcCCc-Cc-cc--cCCCCCCEEECCCCcCCcCCCC--cCccc
Confidence 8889999999999999886 4422 2589999999999985 66 34 5788899999999988873322 24889
Q ss_pred EEEecCCeecccCCC--CCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcC
Q 003307 313 KVNLSSNKLSGSLPA--RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSL 390 (832)
Q Consensus 313 ~L~L~~N~l~~~~p~--~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 390 (832)
+|++++|+++ .+|. .+.+|+.|++++|++++... ...+|+.|++++|.+++ +|.. +++|++|++++|++
T Consensus 219 ~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 219 SIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp EEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EEECcCCcCC-cccccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 9999999888 5664 34467788888888887433 12468888888888886 4433 36788888888888
Q ss_pred CCCcccccCCCCCCCEEEccCCcccccCcccccCC-CCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCC
Q 003307 391 EGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYN 469 (832)
Q Consensus 391 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N 469 (832)
++ +|.. .++|+.|++++|++++.. .+ ++|+.|++++|++++ +|... .+|++|++++|
T Consensus 290 ~~-l~~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~~------------~~L~~L~L~~N 347 (454)
T 1jl5_A 290 SG-LSEL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPALP------------PRLERLIASFN 347 (454)
T ss_dssp SE-ESCC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCCC------------TTCCEEECCSS
T ss_pred Cc-ccCc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-ccccC------------CcCCEEECCCC
Confidence 75 2211 257888888888887632 22 578888888888876 44321 13888888888
Q ss_pred cCcccCChhhhcCCCCCEEeCcCCcCcc--cCCCCccCCCcEEEcCCCccccccCccCCCCC
Q 003307 470 SLSGRLLPGISKFHNLVYLNLSNNKFEG--SIPDGLPNGLKEFNVSFNNLSGVVPENLRNFP 529 (832)
Q Consensus 470 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g--~ip~~~~~~L~~l~ls~N~l~g~~p~~~~~~~ 529 (832)
++++ +|. .+++|+.|+|++|++++ .+|.++ . +++.|++.|.+|..+..+.
T Consensus 348 ~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l----~--~L~~n~~~~~i~~~~~~L~ 399 (454)
T 1jl5_A 348 HLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESV----E--DLRMNSHLAEVPELPQNLK 399 (454)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTC----C--EEECCC-------------
T ss_pred cccc-ccc---hhhhccEEECCCCCCCcCCCChHHH----H--hhhhcccccccccccCcCC
Confidence 8884 555 46788888888888887 566554 2 3456777787776544433
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-36 Score=344.78 Aligned_cols=346 Identities=21% Similarity=0.272 Sum_probs=227.9
Q ss_pred CCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 88 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
.+++|+.|+++++.+.. ++.+..+++|++|+|++|.+++..+ |.++++|++|++++|.+++..+ |.++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCcc-CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 45677888888887765 4467778888888888888886654 8888888888888888886554 88888888888
Q ss_pred CcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccC
Q 003307 168 LRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN 247 (832)
Q Consensus 168 L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 247 (832)
|++|++++..+ +.++++|++|++++|.+++. ..+..+++|+.|+++ |.+.+.. . +..+++|+.|++++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~-~~~~~~~--~--~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-----SALSGLTSLQQLSFG-NQVTDLK--P--LANLTTLERLDISS 186 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-----GGGTTCTTCSEEEEE-ESCCCCG--G--GTTCTTCCEEECCS
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCC-----hhhccCCcccEeecC-CcccCch--h--hccCCCCCEEECcC
Confidence 88888876644 78888888888888887742 224456777777775 3443221 1 66777788888887
Q ss_pred CcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCC
Q 003307 248 NHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPA 327 (832)
Q Consensus 248 N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~ 327 (832)
|.+++. +.+..+++|+.|++++|++++..| + ..+++|+.|++++|++++.......++|+.|++++|++++.
T Consensus 187 n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--- 258 (466)
T 1o6v_A 187 NKVSDI-SVLAKLTNLESLIATNNQISDITP--L--GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL--- 258 (466)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---
T ss_pred CcCCCC-hhhccCCCCCEEEecCCccccccc--c--cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc---
Confidence 777643 456677777777777777775544 2 34566777777777666532222233444444444444322
Q ss_pred CCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEE
Q 003307 328 RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVI 407 (832)
Q Consensus 328 ~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 407 (832)
.+ +...++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|
T Consensus 259 ------------------~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 259 ------------------AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp ------------------GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred ------------------hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 22 1222356777777777665443 6667777777777777765443 5666777777
Q ss_pred EccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCE
Q 003307 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVY 487 (832)
Q Consensus 408 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 487 (832)
++++|++++..+ +..+++|+.|++++|++++. + .+..+ .+|+.|++++|++++..| +..+++|+.
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l~~l---------~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S-SLANL---------TNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GGTTC---------TTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc-h-hhccC---------CCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 777777776544 56677777777777776654 1 11111 236777777777776655 667777777
Q ss_pred EeCcCCcCcc
Q 003307 488 LNLSNNKFEG 497 (832)
Q Consensus 488 L~Ls~N~l~g 497 (832)
|++++|++++
T Consensus 380 L~l~~n~~~~ 389 (466)
T 1o6v_A 380 LGLNDQAWTN 389 (466)
T ss_dssp EECCCEEEEC
T ss_pred EeccCCcccC
Confidence 7777777765
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.9e-36 Score=336.97 Aligned_cols=334 Identities=20% Similarity=0.194 Sum_probs=243.0
Q ss_pred CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 187 (832)
.++.+++|++|+|++|.|++. | .|..+++|++|+|++|++++. | ++.+++|++|+|++|++++. + ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 678899999999999999976 5 699999999999999999975 4 89999999999999999986 3 8899999
Q ss_pred CEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEE
Q 003307 188 VHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILR 267 (832)
Q Consensus 188 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 267 (832)
++|++++|++++ ++ +..+++|++|++++|++++. . +..+++|+.|++++|...+.+ .+..+++|+.|+
T Consensus 109 ~~L~L~~N~l~~-l~-----~~~l~~L~~L~l~~N~l~~l---~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ 176 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD-----VSQNPLLTYLNCARNTLTEI---D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLD 176 (457)
T ss_dssp CEEECCSSCCSC-CC-----CTTCTTCCEEECTTSCCSCC---C--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEE
T ss_pred CEEECCCCcCCe-ec-----CCCCCcCCEEECCCCcccee---c--cccCCcCCEEECCCCCccccc-ccccCCcCCEEE
Confidence 999999999986 33 45678999999999999873 2 778899999999999766655 577889999999
Q ss_pred ccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcch
Q 003307 268 LGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLS 347 (832)
Q Consensus 268 L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~ 347 (832)
+++|++++ +| + ..+++|+.|++++|++++. +....++|+.|++++|++++.....+.+|+.|++++|++++...
T Consensus 177 ls~n~l~~-l~--l--~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 177 CSFNKITE-LD--V--SQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CCSSCCCC-CC--C--TTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCC
T ss_pred CCCCccce-ec--c--ccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCH
Confidence 99999985 55 3 4677888888888888865 33444567777777777776322223334444444444444321
Q ss_pred hhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCC
Q 003307 348 RMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTK 427 (832)
Q Consensus 348 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 427 (832)
. ...+|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|.+.+.+|. ..++
T Consensus 251 ~---~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 251 S---TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp T---TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred H---HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCc
Confidence 1 1123444443332 23344555555544444 34455555555555555544442 2344
Q ss_pred CCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCC
Q 003307 428 LTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGL 507 (832)
Q Consensus 428 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L 507 (832)
|+.|++++| .+|++|+|++|+|++. + ++++++|+.||+++|+|++ + +.|
T Consensus 309 L~~L~l~~~----------------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l-----~~L 357 (457)
T 3bz5_A 309 ITELDLSQN----------------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-F-----SSV 357 (457)
T ss_dssp CSCCCCTTC----------------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-C-----TTG
T ss_pred ceEechhhc----------------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-c-----ccc
Confidence 445555444 2499999999999984 3 8999999999999999997 3 347
Q ss_pred cEEEcCCCccccc
Q 003307 508 KEFNVSFNNLSGV 520 (832)
Q Consensus 508 ~~l~ls~N~l~g~ 520 (832)
..|++++|.++|.
T Consensus 358 ~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 358 GKIPALNNNFEAE 370 (457)
T ss_dssp GGSSGGGTSEEEE
T ss_pred ccccccCCcEEec
Confidence 7788999999987
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=342.19 Aligned_cols=302 Identities=18% Similarity=0.210 Sum_probs=195.9
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
++++.|+|++|++++..+ .|..+++|++|+|++|.|++..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 578888888888888776 7888888888888888888887888888888888888888888766667788888888888
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCC
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 248 (832)
++|++++..+..|.++++|++|+|++|.+++..+..+. .+++|+.|++++|.+++..+.. +..+++|+.|++++|
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS---GLNSLEQLTLEKCNLTSIPTEA--LSHLHGLIVLRLRHL 186 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST---TCTTCCEEEEESCCCSSCCHHH--HTTCTTCCEEEEESC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhcc---CCCCCCEEECCCCcCcccChhH--hcccCCCcEEeCCCC
Confidence 88888877777788888888888888877755443332 3355666666666554322222 444555555555555
Q ss_pred cccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCC
Q 003307 249 HLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPA 327 (832)
Q Consensus 249 ~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~ 327 (832)
.+.+..+ .+..+++|+.|++++|.+.+.+|...+. ..+|+.|++++|++
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------~~~L~~L~l~~n~l------ 236 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY------------------------GLNLTSLSITHCNL------ 236 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT------------------------TCCCSEEEEESSCC------
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCccccc------------------------CccccEEECcCCcc------
Confidence 5554444 4455555555555555444333332210 11233333333333
Q ss_pred CCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEE
Q 003307 328 RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVI 407 (832)
Q Consensus 328 ~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 407 (832)
++.....+....+|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|
T Consensus 237 ---------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 237 ---------------TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp ---------------CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred ---------------cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence 22222223333356777777777776666667777777777777777776666777777777777
Q ss_pred EccCCcccccCcccccCCCCCCeEeccCCccccc
Q 003307 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP 441 (832)
Q Consensus 408 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (832)
+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus 302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 7777777766666666667777777777766543
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.6e-35 Score=330.99 Aligned_cols=348 Identities=20% Similarity=0.245 Sum_probs=280.6
Q ss_pred CCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCE
Q 003307 110 GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVH 189 (832)
Q Consensus 110 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 189 (832)
..+++|+.|++++|.++.. | .+..+++|++|+|++|.+++..+ |.++++|++|+|++|.+++..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 3467899999999999864 4 48889999999999999997654 9999999999999999987766 999999999
Q ss_pred EECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEcc
Q 003307 190 VDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLG 269 (832)
Q Consensus 190 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~ 269 (832)
|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|+.|+++ |.+.+. +.+..+++|+.|+++
T Consensus 117 L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~--~~--~~~l~~L~~L~l~-~~~~~~-~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 117 LTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDI--SA--LSGLTSLQQLSFG-NQVTDL-KPLANLTTLERLDIS 185 (466)
T ss_dssp EECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCC--GG--GTTCTTCSEEEEE-ESCCCC-GGGTTCTTCCEEECC
T ss_pred EECCCCCCCCChH-----HcCCCCCCEEECCCCccCCC--hh--hccCCcccEeecC-CcccCc-hhhccCCCCCEEECc
Confidence 9999999985432 45678899999999988752 22 7788888888886 455433 347788888888888
Q ss_pred ccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhh
Q 003307 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRM 349 (832)
Q Consensus 270 ~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~ 349 (832)
+|.+++. + .+ ..+++|++|++++|.+++..+.....+|+.|++++|++++ . + .
T Consensus 186 ~n~l~~~-~-~l--~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---------------------~-~-~ 238 (466)
T 1o6v_A 186 SNKVSDI-S-VL--AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD---------------------I-G-T 238 (466)
T ss_dssp SSCCCCC-G-GG--GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC---------------------C-G-G
T ss_pred CCcCCCC-h-hh--ccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc---------------------c-h-h
Confidence 8888743 3 23 4567788888888888776654445566666666666553 2 1 1
Q ss_pred ccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCC
Q 003307 350 QNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLT 429 (832)
Q Consensus 350 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 429 (832)
+...++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 2233479999999999998765 8899999999999999997655 8899999999999999998654 88999999
Q ss_pred eEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcE
Q 003307 430 DLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKE 509 (832)
Q Consensus 430 ~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~ 509 (832)
.|+|++|++++..|. .... +|+.|++++|++++. +.+..+++|+.|++++|++++..|-.-.++|+.
T Consensus 313 ~L~L~~n~l~~~~~~--~~l~---------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 379 (466)
T 1o6v_A 313 YLTLYFNNISDISPV--SSLT---------KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQ 379 (466)
T ss_dssp EEECCSSCCSCCGGG--GGCT---------TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCE
T ss_pred EEECcCCcCCCchhh--ccCc---------cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCE
Confidence 999999999987662 2222 499999999999985 578999999999999999999888333378999
Q ss_pred EEcCCCccccc
Q 003307 510 FNVSFNNLSGV 520 (832)
Q Consensus 510 l~ls~N~l~g~ 520 (832)
|++++|.+++.
T Consensus 380 L~l~~n~~~~~ 390 (466)
T 1o6v_A 380 LGLNDQAWTNA 390 (466)
T ss_dssp EECCCEEEECC
T ss_pred EeccCCcccCC
Confidence 99999999984
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=334.11 Aligned_cols=330 Identities=19% Similarity=0.185 Sum_probs=191.9
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
+++++|+|++|+|+++.|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 68999999999999998999999999999999999999988999999999999999999999887788889999999999
Q ss_pred ccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcccc
Q 003307 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSN 271 (832)
Q Consensus 193 s~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N 271 (832)
++|.+++..+..+. .+++|+.|++++|.+++..+.. |..+++|+.|++++|.+++..+ .+..+++|+.|+|++|
T Consensus 112 s~n~i~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 112 SENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHRA--FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp TTSCCCEECTTTTT---TCTTCCEEEECCTTCCEECTTS--STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CCCccccCChhHcc---ccccCCEEECCCCccceeChhh--ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 99988865554432 2355555555555554433333 4444444444444444443322 2333444444444444
Q ss_pred CCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhcc
Q 003307 272 QLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQN 351 (832)
Q Consensus 272 ~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~ 351 (832)
.+.+..+..+ .. ..+
T Consensus 187 ~i~~~~~~~~--~~----------------------l~~----------------------------------------- 201 (477)
T 2id5_A 187 NINAIRDYSF--KR----------------------LYR----------------------------------------- 201 (477)
T ss_dssp CCCEECTTCS--CS----------------------CTT-----------------------------------------
T ss_pred cCcEeChhhc--cc----------------------Ccc-----------------------------------------
Confidence 4332211111 11 123
Q ss_pred ccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeE
Q 003307 352 WGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDL 431 (832)
Q Consensus 352 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 431 (832)
|+.|++++|.+.+.+|.......+|++|+|++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus 202 ----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (477)
T 2id5_A 202 ----LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277 (477)
T ss_dssp ----CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEE
T ss_pred ----cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEE
Confidence 3333333333333333333333345555555555543333444455555555555555555444445555555555
Q ss_pred eccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCc-cCCCcEE
Q 003307 432 NLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGL-PNGLKEF 510 (832)
Q Consensus 432 ~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~-~~~L~~l 510 (832)
+|++|++++..|..+..+. +|+.|+|++|+|++..+..|..+++|+.|+|++|++.+..+..+ ......+
T Consensus 278 ~L~~n~l~~~~~~~~~~l~---------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~ 348 (477)
T 2id5_A 278 QLVGGQLAVVEPYAFRGLN---------YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL 348 (477)
T ss_dssp ECCSSCCSEECTTTBTTCT---------TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSS
T ss_pred ECCCCccceECHHHhcCcc---------cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhcc
Confidence 5555555544443332222 25555555555555555556667777777777777765543211 1222233
Q ss_pred EcCCCccccccCccC
Q 003307 511 NVSFNNLSGVVPENL 525 (832)
Q Consensus 511 ~ls~N~l~g~~p~~~ 525 (832)
++..+...+..|..+
T Consensus 349 ~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 349 NFNRQQPTCATPEFV 363 (477)
T ss_dssp CCTTCCCBEEESGGG
T ss_pred ccCccCceeCCchHH
Confidence 444455555445443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.9e-35 Score=323.10 Aligned_cols=351 Identities=20% Similarity=0.173 Sum_probs=233.7
Q ss_pred ccCccccCCCCCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEE
Q 003307 40 IDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFL 118 (832)
Q Consensus 40 l~~w~~~~~~~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L 118 (832)
+++|... ..|.+.|.+..|.. ..+.+......... ...-..+.+++.|++++|.+...++ .+..+++|++|
T Consensus 3 ~~~~~~~----~~C~~~~~~~~c~~---~~~~i~~~~~~~~~-~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L 74 (390)
T 3o6n_A 3 VKPRQPE----YKCIDSNLQYDCVF---YDVHIDMQTQDVYF-GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74 (390)
T ss_dssp ----CCE----ECBCC------EEE---ESCEECSSCCCCEE-SCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEE
T ss_pred cCCCCCc----cceehhhhhhccce---eeeeeecccccccc-cccccccCCceEEEecCCchhhCChhHhcccccCcEE
Confidence 5678653 23445677776641 11222222221111 1123346788889998888887666 57888889999
Q ss_pred ECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCc
Q 003307 119 DLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 119 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+|++|.+++..+..|..+++|++|+|++|.+++..|..|+++++|++|+|++|+++...+..|.++++|++|++++|.++
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC
Confidence 99999888887788888889999999999888887888888888999999988888766666788888888888888887
Q ss_pred cccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCC
Q 003307 199 GSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLP 278 (832)
Q Consensus 199 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p 278 (832)
+..+..+. .+++|++|++++|.+++.. +..+++|+.|++++|.+++. ....+|+.|++++|.+.
T Consensus 155 ~~~~~~~~---~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~---- 218 (390)
T 3o6n_A 155 RIEDDTFQ---ATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSIN---- 218 (390)
T ss_dssp BCCTTTTS---SCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCCC----
T ss_pred ccChhhcc---CCCCCCEEECCCCcCCccc-----cccccccceeeccccccccc----CCCCcceEEECCCCeee----
Confidence 55444333 3466777777777665421 44456666666666655532 22234555555555554
Q ss_pred hhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccE
Q 003307 279 VALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVED 358 (832)
Q Consensus 279 ~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~ 358 (832)
.... ....+|+.|++++|++++. ..+. ..++|++
T Consensus 219 ----------------------~~~~-~~~~~L~~L~l~~n~l~~~--~~l~---------------------~l~~L~~ 252 (390)
T 3o6n_A 219 ----------------------VVRG-PVNVELTILKLQHNNLTDT--AWLL---------------------NYPGLVE 252 (390)
T ss_dssp ----------------------EEEC-CCCSSCCEEECCSSCCCCC--GGGG---------------------GCTTCSE
T ss_pred ----------------------eccc-cccccccEEECCCCCCccc--HHHc---------------------CCCCccE
Confidence 3211 1224566666666665532 1111 1236888
Q ss_pred EEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcc
Q 003307 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438 (832)
Q Consensus 359 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 438 (832)
|+|++|.+++..|..+..+++|++|+|++|++++ +|..+..+++|++|++++|++++ +|..+..+++|+.|+|++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcc
Confidence 8888888888888888888889999999998884 56666788899999999998885 466677888999999999988
Q ss_pred cccCCcccccCCCCCcccCcccccEEEccCCcCccc
Q 003307 439 SGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR 474 (832)
Q Consensus 439 ~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 474 (832)
+.. |.. .. .+|+.|++++|++++.
T Consensus 331 ~~~-~~~--~~---------~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 331 VTL-KLS--TH---------HTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCC-CCC--TT---------CCCSEEECCSSCEEHH
T ss_pred cee-Cch--hh---------ccCCEEEcCCCCccch
Confidence 753 311 11 2488999999998864
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-34 Score=336.53 Aligned_cols=312 Identities=21% Similarity=0.195 Sum_probs=231.6
Q ss_pred CCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEe
Q 003307 88 GLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYL 166 (832)
Q Consensus 88 ~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 166 (832)
.+.+++.|++++|.+...++ .+..+++|++|+|++|.|++..|..|..+++|++|+|++|.|++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788899999998887777 57888999999999999998888889999999999999999998888888899999999
Q ss_pred eCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEcc
Q 003307 167 DLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246 (832)
Q Consensus 167 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 246 (832)
+|++|.+++.++..|.++++|++|+|++|.+++..|..++ .+++|+.|++++|.+++.. +..+++|+.|+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~ 200 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVS 200 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT---TCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh---cCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcc
Confidence 9999999877777788888888888888888866554443 3467777777777765431 3445666666666
Q ss_pred CCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCC
Q 003307 247 NNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLP 326 (832)
Q Consensus 247 ~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p 326 (832)
+|.+++. ....+|+.|++++|.+. ...+. ...+|+.|+|++|.+++.
T Consensus 201 ~n~l~~l----~~~~~L~~L~ls~n~l~--------------------------~~~~~-~~~~L~~L~L~~n~l~~~-- 247 (597)
T 3oja_B 201 YNLLSTL----AIPIAVEELDASHNSIN--------------------------VVRGP-VNVELTILKLQHNNLTDT-- 247 (597)
T ss_dssp SSCCSEE----ECCTTCSEEECCSSCCC--------------------------EEECS-CCSCCCEEECCSSCCCCC--
T ss_pred cCccccc----cCCchhheeeccCCccc--------------------------ccccc-cCCCCCEEECCCCCCCCC--
Confidence 6655532 22334555555555554 22221 123566666666666532
Q ss_pred CCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCE
Q 003307 327 ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKV 406 (832)
Q Consensus 327 ~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 406 (832)
..+.+ .++|+.|+|++|.+++.+|..|..+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus 248 ~~l~~---------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 305 (597)
T 3oja_B 248 AWLLN---------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 305 (597)
T ss_dssp GGGGG---------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCE
T ss_pred hhhcc---------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcE
Confidence 11222 2368888888888888888888899999999999999985 5677778899999
Q ss_pred EEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccC
Q 003307 407 IDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRL 475 (832)
Q Consensus 407 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 475 (832)
|+|++|.+++ +|..+..+++|+.|+|++|++++. |.. .. .+|+.|+|++|.+.+..
T Consensus 306 L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~~~--~~---------~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 306 LDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-KLS--TH---------HTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp EECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-CCC--TT---------CCCSEEECCSSCEEHHH
T ss_pred EECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-Chh--hc---------CCCCEEEeeCCCCCChh
Confidence 9999999985 567788889999999999998754 211 11 24899999999998754
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-33 Score=309.61 Aligned_cols=314 Identities=20% Similarity=0.175 Sum_probs=191.4
Q ss_pred CCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCE
Q 003307 110 GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVH 189 (832)
Q Consensus 110 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 189 (832)
..++++++|++++|.++.+.+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34789999999999999877777899999999999999999888889999999999999999999988889999999999
Q ss_pred EECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEc
Q 003307 190 VDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRL 268 (832)
Q Consensus 190 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L 268 (832)
|+|++|.++. +|..+ +..+++|+.|++++|.+++..+ .+..+++|++|++
T Consensus 122 L~L~~n~l~~-l~~~~----------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 122 LVLERNDLSS-LPRGI----------------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp EECCSSCCCC-CCTTT----------------------------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred EECCCCccCc-CCHHH----------------------------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 9999998873 22221 2334444445555554444444 3555555666666
Q ss_pred cccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchh
Q 003307 269 GSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSR 348 (832)
Q Consensus 269 ~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~ 348 (832)
++|++++. +. ..+++|+.|++++|.+++.. ...+|++|++++|.++.. ...
T Consensus 173 ~~n~l~~~-~~----~~l~~L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~---------------------~~~ 223 (390)
T 3o6n_A 173 SSNRLTHV-DL----SLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSINVV---------------------RGP 223 (390)
T ss_dssp CSSCCSBC-CG----GGCTTCSEEECCSSCCSEEE---CCSSCSEEECCSSCCCEE---------------------ECC
T ss_pred CCCcCCcc-cc----ccccccceeecccccccccC---CCCcceEEECCCCeeeec---------------------ccc
Confidence 66655532 21 23455666666666554311 112344444444443321 100
Q ss_pred hccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCC
Q 003307 349 MQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKL 428 (832)
Q Consensus 349 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 428 (832)
. ..+|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++. +..+..+++
T Consensus 224 ~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~- 296 (390)
T 3o6n_A 224 V---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPT- 296 (390)
T ss_dssp C---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTT-
T ss_pred c---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCC-
Confidence 0 01344555555544432 2344444444444444444444444444444444444444444432 222233333
Q ss_pred CeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCc
Q 003307 429 TDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLK 508 (832)
Q Consensus 429 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~ 508 (832)
|++|+|++|+++ .+|..+..+++|+.|+|++|+++. +|....++|+
T Consensus 297 --------------------------------L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~L~ 342 (390)
T 3o6n_A 297 --------------------------------LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LKLSTHHTLK 342 (390)
T ss_dssp --------------------------------CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CCCCTTCCCS
T ss_pred --------------------------------CCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eCchhhccCC
Confidence 566666666665 345556677777777777777764 3333335677
Q ss_pred EEEcCCCccccccC
Q 003307 509 EFNVSFNNLSGVVP 522 (832)
Q Consensus 509 ~l~ls~N~l~g~~p 522 (832)
.|++++|++++...
T Consensus 343 ~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 343 NLTLSHNDWDCNSL 356 (390)
T ss_dssp EEECCSSCEEHHHH
T ss_pred EEEcCCCCccchhH
Confidence 77777777776543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.7e-33 Score=323.05 Aligned_cols=332 Identities=21% Similarity=0.214 Sum_probs=206.2
Q ss_pred CCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEE
Q 003307 111 SIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHV 190 (832)
Q Consensus 111 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 190 (832)
.+.+++.|++++|.++.+.+..|..+++|++|+|++|.|++..|..|.++++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46889999999999998888888999999999999999999888899999999999999999999999999999999999
Q ss_pred ECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcc
Q 003307 191 DLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLG 269 (832)
Q Consensus 191 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~ 269 (832)
+|++|.+++..+.. |..+++|+.|++++|.+++..| .+..+++|+.|+|+
T Consensus 129 ~L~~n~l~~l~~~~-----------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 129 VLERNDLSSLPRGI-----------------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp ECCSSCCCCCCTTT-----------------------------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred EeeCCCCCCCCHHH-----------------------------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 99999988432221 3344455555555555554444 45555566666666
Q ss_pred ccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhh
Q 003307 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRM 349 (832)
Q Consensus 270 ~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~ 349 (832)
+|.+++. +. ..+++|+.|++++|.+++.. ...+|+.|++++|.++.
T Consensus 180 ~N~l~~~-~~----~~l~~L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~-------------------------- 225 (597)
T 3oja_B 180 SNRLTHV-DL----SLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSINV-------------------------- 225 (597)
T ss_dssp TSCCSBC-CG----GGCTTCSEEECCSSCCSEEE---CCTTCSEEECCSSCCCE--------------------------
T ss_pred CCCCCCc-Ch----hhhhhhhhhhcccCcccccc---CCchhheeeccCCcccc--------------------------
Confidence 6666532 21 23455666666666554311 11234444444444331
Q ss_pred ccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCC
Q 003307 350 QNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLT 429 (832)
Q Consensus 350 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 429 (832)
..+.. .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..|..+++|+
T Consensus 226 -------------------~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 226 -------------------VRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp -------------------EECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred -------------------ccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 11110 1234444444444443 23344445555555555555555455555555555
Q ss_pred eEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcE
Q 003307 430 DLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKE 509 (832)
Q Consensus 430 ~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~ 509 (832)
.|+|++|++++. |...... .+|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. |....+.|+.
T Consensus 282 ~L~Ls~N~l~~l-~~~~~~l---------~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~L~~ 349 (597)
T 3oja_B 282 RLYISNNRLVAL-NLYGQPI---------PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKN 349 (597)
T ss_dssp EEECTTSCCCEE-ECSSSCC---------TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-CCCTTCCCSE
T ss_pred EEECCCCCCCCC-CcccccC---------CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-ChhhcCCCCE
Confidence 555555555432 2111111 13666666666666 4566677788888888888888754 3333367888
Q ss_pred EEcCCCccccccCcc-CCCCCCCCCCCCCCCCCC
Q 003307 510 FNVSFNNLSGVVPEN-LRNFPDSAFHPGNSLLTF 542 (832)
Q Consensus 510 l~ls~N~l~g~~p~~-~~~~~~~~~~~~n~~~~~ 542 (832)
|++++|+++|..+.. +..+....+. ++...|.
T Consensus 350 L~l~~N~~~~~~~~~~~~~~~~~~~~-~~~~~C~ 382 (597)
T 3oja_B 350 LTLSHNDWDCNSLRALFRNVARPAVD-DADQHCK 382 (597)
T ss_dssp EECCSSCEEHHHHHHHTTTCCTTTBC-CCCCCCC
T ss_pred EEeeCCCCCChhHHHHHHHHhhhccc-cccccCC
Confidence 888888887764433 4444444333 4444553
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3e-32 Score=296.47 Aligned_cols=307 Identities=19% Similarity=0.265 Sum_probs=191.5
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
.+..+++|+.|++++|.+... +.+..+++|++|+|++|.+++..+ |..+++|++|++++|.++.. +.|.++++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred cchhcccccEEEEeCCccccc-hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 445678888899988888753 468888899999999998886644 88888999999999988853 3688888999
Q ss_pred EeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 165 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
+|+|++|.+++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~ 183 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS----PLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLS 183 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG----GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEE
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc----chhhCCCCcEEEecCCCcCCchh----hccCCCCCEEE
Confidence 99999988886544 7888888888888886543332 24456777777777777654322 55667777777
Q ss_pred ccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeeccc
Q 003307 245 ASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGS 324 (832)
Q Consensus 245 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~ 324 (832)
+++|.+.+..+ +..+++|+.|++++|.+.+..+ + ..+++|++|++++|.+++..+....++|++|++++|.++
T Consensus 184 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-- 256 (347)
T 4fmz_A 184 LNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--V--ANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS-- 256 (347)
T ss_dssp CTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--
T ss_pred ccCCccccccc-ccCCCccceeecccCCCCCCch--h--hcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccC--
Confidence 77777664333 5666677777777777664333 2 345566666666666554333222233333333333333
Q ss_pred CCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCC
Q 003307 325 LPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPEL 404 (832)
Q Consensus 325 ~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 404 (832)
+. + .+...++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|
T Consensus 257 -------------------~~-~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 257 -------------------DI-N-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -------------------CC-G-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -------------------CC-h-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 21 0 111122455555555555543 234555555555555555555555555555555
Q ss_pred CEEEccCCcccccCcccccCCCCCCeEeccCCcc
Q 003307 405 KVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438 (832)
Q Consensus 405 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 438 (832)
++|++++|++++..| +..+++|+.|++++|.|
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 555555555555433 44555555555555554
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-31 Score=291.17 Aligned_cols=152 Identities=21% Similarity=0.295 Sum_probs=100.5
Q ss_pred CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 187 (832)
.+..+++|++|++++|.++.. + .+..+++|++|++++|.+++..+ |.++++|++|+|++|.++.. +.+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 455788899999999998854 3 48888999999999999886543 88899999999999988764 358888888
Q ss_pred CEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEE
Q 003307 188 VHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILR 267 (832)
Q Consensus 188 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 267 (832)
++|++++|.+++..+ +..+++|+.|++++|......+. +..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 113 ~~L~l~~n~i~~~~~-----~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~ 183 (347)
T 4fmz_A 113 RELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS 183 (347)
T ss_dssp SEEECTTSCCCCCGG-----GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE
T ss_pred CEEECcCCcccCchh-----hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEE
Confidence 888888888874322 33456666666666644322211 4445555555555555443222 34444444444
Q ss_pred ccccCCC
Q 003307 268 LGSNQLS 274 (832)
Q Consensus 268 L~~N~l~ 274 (832)
+++|.+.
T Consensus 184 l~~n~l~ 190 (347)
T 4fmz_A 184 LNYNQIE 190 (347)
T ss_dssp CTTSCCC
T ss_pred ccCCccc
Confidence 4444443
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.9e-30 Score=278.67 Aligned_cols=293 Identities=19% Similarity=0.219 Sum_probs=162.5
Q ss_pred CCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECc
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLS 193 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 193 (832)
+++.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666665 3344332 466666666666666656666666666666666666666666666666666666666
Q ss_pred cCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccc--cCC-CccccccccEEEccc
Q 003307 194 NNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVG--AIP-SFNFVFSLRILRLGS 270 (832)
Q Consensus 194 ~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~-~~~~l~~L~~L~L~~ 270 (832)
+|+++ .+|..+. ++|++|++++|.+++..+.. +..+++|+.|++++|.++. ..+ .+..+ +|+.|++++
T Consensus 111 ~n~l~-~l~~~~~-----~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 111 KNHLV-EIPPNLP-----SSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp SSCCC-SCCSSCC-----TTCCEEECCSSCCCCCCSGG--GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CCcCC-ccCcccc-----ccCCEEECCCCccCccCHhH--hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 66665 2332221 34444444444443221111 3344444444444444431 222 22222 334444444
Q ss_pred cCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhc
Q 003307 271 NQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQ 350 (832)
Q Consensus 271 N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~ 350 (832)
|++++ +|..+ .
T Consensus 182 n~l~~-l~~~~--------------------------------------------------------------------~ 192 (332)
T 2ft3_A 182 AKLTG-IPKDL--------------------------------------------------------------------P 192 (332)
T ss_dssp SBCSS-CCSSS--------------------------------------------------------------------C
T ss_pred CCCCc-cCccc--------------------------------------------------------------------c
Confidence 33331 22111 0
Q ss_pred cccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCe
Q 003307 351 NWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTD 430 (832)
Q Consensus 351 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 430 (832)
.+|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.
T Consensus 193 ---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 193 ---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268 (332)
T ss_dssp ---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred ---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence 13555555566665555556666666666666666666655556666666666666666666 34555666677777
Q ss_pred EeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCc--ccCChhhhcCCCCCEEeCcCCc
Q 003307 431 LNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLS--GRLLPGISKFHNLVYLNLSNNK 494 (832)
Q Consensus 431 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~ 494 (832)
|+|++|++++..+..+..... ......|+.|++++|.+. +..|..|..+++|+.|++++|+
T Consensus 269 L~l~~N~l~~~~~~~~~~~~~---~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 269 VYLHTNNITKVGVNDFCPVGF---GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSCCCBCCTTSSSCSSC---CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EECCCCCCCccChhHcccccc---ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777777666443332222110 011224888999999887 6677788899999999999885
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.8e-31 Score=286.94 Aligned_cols=271 Identities=15% Similarity=0.175 Sum_probs=230.7
Q ss_pred cCCCHHHHHHHHHhhhcCCCCCCcccccCccccC-CCCCCCCCCCCccccC----------CCcEEEEEeCCCCCccccC
Q 003307 14 NALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKS-LSSDGCPRNWFGITCT----------NGYVTSIMLNDMGLVGNFS 82 (832)
Q Consensus 14 ~~~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~-~~~~~c~~~w~gv~C~----------~~~v~~l~l~~~~l~g~~~ 82 (832)
.++..+|++||++||+++..|+.++ +.+|.... ...++ |.|.|+.|. ..+|+.|+|+++++. .+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~-~~~w~~~~~~~~~~--~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l- 96 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQI--ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF- 96 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTH-HHHHHHHTTTCTTS--CCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC-
T ss_pred cccCchHHHHHHHHHHhccCCchhh-hhhhcccccccccc--cccCCcchhhhHHHHhcccccceeEEEccCCCch-hc-
Confidence 3445679999999999886677664 78895221 12344 499999994 368999999999988 55
Q ss_pred cccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCC--
Q 003307 83 FPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGG-- 159 (832)
Q Consensus 83 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-- 159 (832)
++.+.++++|++|+|++|.++ .+| .++.+++|++|+|++|.++ .+|..|.++++|++|+|++|++.+.+|..+..
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 467888999999999999999 566 8999999999999999999 67889999999999999999998899988765
Q ss_pred -------CCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCC
Q 003307 160 -------LGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHD 232 (832)
Q Consensus 160 -------l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 232 (832)
+++|++|+|++|+++ .+|..+..+++|++|+|++|.+++ +|..+ ..+++|++|++++|.+.+.++..
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l---~~l~~L~~L~Ls~n~~~~~~p~~- 248 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI---HHLPKLEELDLRGCTALRNYPPI- 248 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG---GGCTTCCEEECTTCTTCCBCCCC-
T ss_pred chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh---ccCCCCCEEECcCCcchhhhHHH-
Confidence 999999999999998 778889999999999999999995 44443 45689999999999999888877
Q ss_pred CCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCC
Q 003307 233 GMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300 (832)
Q Consensus 233 ~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~ 300 (832)
+..+++|+.|++++|.+.+.+| .+..+++|+.|+|++|++.+.+|..+ ..+++|+.+++..+.+.
T Consensus 249 -~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l--~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 249 -FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI--AQLPANCIILVPPHLQA 314 (328)
T ss_dssp -TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG--GGSCTTCEEECCGGGSC
T ss_pred -hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH--hhccCceEEeCCHHHHH
Confidence 8899999999999999999888 88999999999999999999999988 67888888888876654
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.1e-30 Score=275.49 Aligned_cols=293 Identities=17% Similarity=0.199 Sum_probs=187.0
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
+..|.|.|..+.|. ++++.. + +..+ .+.|+.|+|++|.+++..+ .|+.+++|++|+|++|.+++.
T Consensus 26 p~~c~c~l~~l~~~----------~~~l~~-l-p~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (330)
T 1xku_A 26 PFRCQCHLRVVQCS----------DLGLEK-V-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91 (330)
T ss_dssp CTTCEEETTEEECT----------TSCCCS-C-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred CCCCcCCCeEEEec----------CCCccc-c-CccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee
Confidence 34566667666664 333332 2 1222 2689999999999998888 899999999999999999998
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcc--ccCCCCC
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG--SLDLGLG 206 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~ 206 (832)
.|..|.++++|++|+|++|+++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.++. ..+.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--- 165 (330)
T 1xku_A 92 SPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG--- 165 (330)
T ss_dssp CTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT---
T ss_pred CHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh---
Confidence 8999999999999999999998 4566554 789999999999998888899999999999999999863 2222
Q ss_pred CCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhC
Q 003307 207 DSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQES 285 (832)
Q Consensus 207 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 285 (832)
.+..+++|++|++++|.++. ++.. + .++|+.|++++|.+++..+ .+..+++|+.|+|++|++++..+..+ ..
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~-l~~~--~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~ 238 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITT-IPQG--L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--AN 238 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCS-CCSS--C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG--GG
T ss_pred hccCCCCcCEEECCCCcccc-CCcc--c--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc--cC
Confidence 23344666666666666653 2221 1 1455555555555555444 44455555555555555543322222 12
Q ss_pred CCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCc
Q 003307 286 SMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNF 365 (832)
Q Consensus 286 ~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~ 365 (832)
++ +|+.|+|++|.
T Consensus 239 l~-------------------------------------------------------------------~L~~L~L~~N~ 251 (330)
T 1xku_A 239 TP-------------------------------------------------------------------HLRELHLNNNK 251 (330)
T ss_dssp ST-------------------------------------------------------------------TCCEEECCSSC
T ss_pred CC-------------------------------------------------------------------CCCEEECCCCc
Confidence 22 34444444444
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCCCCcccccCC------CCCCCEEEccCCcccc--cCcccccCCCCCCeEeccCCc
Q 003307 366 LTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGT------YPELKVIDLSLNHLNG--FLLPSFFTSTKLTDLNLSGNN 437 (832)
Q Consensus 366 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 437 (832)
++ .+|..+..+++|++|++++|+|++..+..|.. .+.|+.|++++|.+.. ..|..|..+..|+.++|++|+
T Consensus 252 l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 252 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred Cc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 44 33444455555555555555555444444432 2566677777776643 445666667777777777764
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3e-30 Score=278.57 Aligned_cols=266 Identities=19% Similarity=0.177 Sum_probs=178.2
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
++|+.|+|++|.+.+..+ .|..+++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 689999999999998877 8999999999999999999888999999999999999999998 4565554 78999999
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCcc--ccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEcc
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSG--SLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 246 (832)
++|++++..+..|.++++|++|++++|.++. ..+..+ ..+ +|+.|++++|.+++ ++.. + .++|+.|+++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~~l-~L~~L~l~~n~l~~-l~~~--~--~~~L~~L~l~ 201 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF---DGL-KLNYLRISEAKLTG-IPKD--L--PETLNELHLD 201 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS---CSC-CCSCCBCCSSBCSS-CCSS--S--CSSCSCCBCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc---cCC-ccCEEECcCCCCCc-cCcc--c--cCCCCEEECC
Confidence 9999998888889999999999999998863 333322 223 66666666666654 2222 1 1456666666
Q ss_pred CCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccC
Q 003307 247 NNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSL 325 (832)
Q Consensus 247 ~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~ 325 (832)
+|.+++..+ .+..+++|+.|+|++|++++..+..+ ..++
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~l~-------------------------------------- 241 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--SFLP-------------------------------------- 241 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--GGCT--------------------------------------
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--hCCC--------------------------------------
Confidence 666655544 45555555555555555554333222 1222
Q ss_pred CCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCC-----
Q 003307 326 PARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGT----- 400 (832)
Q Consensus 326 p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~----- 400 (832)
+|+.|+|++|.++ .+|..+..+++|++|++++|+|++..+..|..
T Consensus 242 -----------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 242 -----------------------------TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp -----------------------------TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred -----------------------------CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 3444444444444 34444555555666666666665544444433
Q ss_pred -CCCCCEEEccCCccc--ccCcccccCCCCCCeEeccCCc
Q 003307 401 -YPELKVIDLSLNHLN--GFLLPSFFTSTKLTDLNLSGNN 437 (832)
Q Consensus 401 -l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~ 437 (832)
.+.|+.|++++|.+. +..+..|..+++|+.|++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 245677777777766 5566667777777777777764
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.6e-31 Score=283.87 Aligned_cols=247 Identities=26% Similarity=0.368 Sum_probs=151.4
Q ss_pred CCCCEEEcCCCCCcc--cCC-CCCCCCCCCEEECCC-CCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCE
Q 003307 90 KMLCNVSVSNNQLMG--NIT-DIGSIQSLEFLDLSH-NLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKY 165 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~--~~~-~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 165 (832)
.+++.|+|++|.+.+ .+| .++.+++|++|+|++ |.+++.+|..|+++++|++|+|++|.+++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 367778888888877 666 777788888888874 7777777777777888888888888877777777777777777
Q ss_pred eeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCC-CcCEEE
Q 003307 166 LDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFD-NLEVFD 244 (832)
Q Consensus 166 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~ 244 (832)
|+|++|.+++.+|..+..+++|++|+|++|++++.+|..++. ++ +|+.|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-----------------------------l~~~L~~L~ 180 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-----------------------------FSKLFTSMT 180 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-----------------------------CCTTCCEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-----------------------------hhhcCcEEE
Confidence 777777777777777777777777777777776655544332 22 344444
Q ss_pred ccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecc
Q 003307 245 ASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG 323 (832)
Q Consensus 245 Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~ 323 (832)
+++|++++.+| .+..+. |+.|++++|++++..|..+
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~------------------------------------------ 217 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF------------------------------------------ 217 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC------------------------------------------
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH------------------------------------------
Confidence 44444443333 222222 3344444333332222221
Q ss_pred cCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCC
Q 003307 324 SLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPE 403 (832)
Q Consensus 324 ~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 403 (832)
.+++ +|+.|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++
T Consensus 218 ------~~l~---------------------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 218 ------GSDK---------------------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp ------CTTS---------------------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ------hcCC---------------------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 1111 344444444444443333 445556666666666666666666666666
Q ss_pred CCEEEccCCcccccCcccccCCCCCCeEeccCCc
Q 003307 404 LKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN 437 (832)
Q Consensus 404 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 437 (832)
|++|++++|++++.+|.. ..+++|+.|++++|+
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 666666666666665554 556666666666665
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.8e-29 Score=270.81 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=77.5
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|++|++++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|+|+
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 3455555555555555555555566666666666665555555555666666666666665 344555556666666666
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcc--cCChhhhcCCCCCEEeCcCCc
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG--RLLPGISKFHNLVYLNLSNNK 494 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~ 494 (832)
+|++++..+..+..... ......|+.|++++|.+.. ..|..|..+.+++.++|++|+
T Consensus 272 ~N~i~~~~~~~f~~~~~---~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGY---NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCCCCCTTSSSCSSC---CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCCccChhhcCCccc---ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 66665433322211100 0111247788888888863 556788889999999999985
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.9e-33 Score=316.96 Aligned_cols=386 Identities=18% Similarity=0.112 Sum_probs=205.1
Q ss_pred CCCCEEEcCCCCCcccCC-C-CCCCCCCCEEECCCCCCCcc----CcccccCCCCCCEEEcccccccccCCCCC-CCCC-
Q 003307 90 KMLCNVSVSNNQLMGNIT-D-IGSIQSLEFLDLSHNLFHGL----IPSGIVSLKNLMLLNISSNSFEGTFPSGF-GGLG- 161 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~- 161 (832)
++|+.|||++|+++.... . +..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 356667777776655433 2 55667777777777776642 35556666777777777777665333222 2233
Q ss_pred ---CCCEeeCcCCCCCC----ccchhhhcCCCCCEEECccCcCccccCCCCCC--CCCCCCccEEECCCCCCeecc----
Q 003307 162 ---KLKYLDLRANRFGG----DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGD--SSFISSIQYLNISENSLVGEL---- 228 (832)
Q Consensus 162 ---~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~~l~~L~~L~L~~N~l~~~~---- 228 (832)
+|++|+|++|+++. .++..+..+++|++|+|++|.+++..+..+.. ....++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777763 34666677777777777777765332221111 111234555555555554321
Q ss_pred CCCCCCCCCCCcCEEEccCCcccccCC-Ccc-----ccccccEEEccccCCCCC----CChhhhhhCCCCCCEEECCCCC
Q 003307 229 FPHDGMPYFDNLEVFDASNNHLVGAIP-SFN-----FVFSLRILRLGSNQLSGS----LPVALLQESSMMLSELDLSLNQ 298 (832)
Q Consensus 229 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~~~~~~L~~L~L~~N~ 298 (832)
+.. +..+++|+.|++++|.+....+ .+. ..++|+.|++++|.+++. ++..+ ..++
T Consensus 163 ~~~--l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~----------- 227 (461)
T 1z7x_W 163 ASV--LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV--ASKA----------- 227 (461)
T ss_dssp HHH--HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH--HHCT-----------
T ss_pred HHH--HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH--HhCC-----------
Confidence 111 2334555555555555543222 111 133555555555555432 12222 2234
Q ss_pred CCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCC----Ccccc
Q 003307 299 LEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM----VPNQT 374 (832)
Q Consensus 299 l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~~ 374 (832)
+|++|++++|++++.....+ .+.+.....+|++|++++|.++.. ++..+
T Consensus 228 -----------~L~~L~Ls~n~l~~~~~~~l----------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 228 -----------SLRELALGSNKLGDVGMAEL----------------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp -----------TCCEEECCSSBCHHHHHHHH----------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred -----------CccEEeccCCcCChHHHHHH----------------HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 44444454444432110000 000000111455555555555432 34445
Q ss_pred cCCCCCCEEEccCCcCCCCcccccC-----CCCCCCEEEccCCccccc----CcccccCCCCCCeEeccCCcccccCCcc
Q 003307 375 SQFLRLTSFKVSNNSLEGDLPAVLG-----TYPELKVIDLSLNHLNGF----LLPSFFTSTKLTDLNLSGNNFSGPLPLQ 445 (832)
Q Consensus 375 ~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 445 (832)
..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|+|++|++++..+..
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 5566666666666666543332222 225677777777777654 3444556677777777777776543332
Q ss_pred cccCCCCCcccCcccccEEEccCCcCcc----cCChhhhcCCCCCEEeCcCCcCccc--------CCCCccCCCcEEEcC
Q 003307 446 EIQNNPSTGSTQNLSLTSLDLAYNSLSG----RLLPGISKFHNLVYLNLSNNKFEGS--------IPDGLPNGLKEFNVS 513 (832)
Q Consensus 446 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~g~--------ip~~~~~~L~~l~ls 513 (832)
+.... .....+|++|+|++|++++ .+|..+..+++|+.|||++|++++. +|... ..|+.|++.
T Consensus 361 l~~~l----~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~-~~L~~L~~~ 435 (461)
T 1z7x_W 361 LCQGL----GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG-CLLEQLVLY 435 (461)
T ss_dssp HHHHH----TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTT-CCCCEEECT
T ss_pred HHHHH----cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCC-cchhheeec
Confidence 22100 0001237788888888875 6677777788888888888887654 22211 357778877
Q ss_pred CCccccccC
Q 003307 514 FNNLSGVVP 522 (832)
Q Consensus 514 ~N~l~g~~p 522 (832)
++.+....+
T Consensus 436 ~~~~~~~~~ 444 (461)
T 1z7x_W 436 DIYWSEEME 444 (461)
T ss_dssp TCCCCHHHH
T ss_pred ccccCHHHH
Confidence 776655443
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3e-32 Score=308.63 Aligned_cols=360 Identities=19% Similarity=0.185 Sum_probs=228.5
Q ss_pred CCCCCEEECCCCCCCccCccc-ccCCCCCCEEEcccccccc----cCCCCCCCCCCCCEeeCcCCCCCCccchhh-hcCC
Q 003307 112 IQSLEFLDLSHNLFHGLIPSG-IVSLKNLMLLNISSNSFEG----TFPSGFGGLGKLKYLDLRANRFGGDIMHLL-SQLG 185 (832)
Q Consensus 112 l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~l~ 185 (832)
+++|++|||++|+++...... +..+++|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 356888999999887654443 6778889999999888874 345667778888888888888876544443 3354
Q ss_pred ----CCCEEECccCcCcc----ccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCc
Q 003307 186 ----SVVHVDLSNNQFSG----SLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSF 257 (832)
Q Consensus 186 ----~L~~L~Ls~N~l~~----~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 257 (832)
+|++|+|++|.++. .++..+. .+++|++|++++|.+++..+.. +... ..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---~~~~L~~L~Ls~n~i~~~~~~~--l~~~------------------l~ 138 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLR---TLPTLQELHLSDNLLGDAGLQL--LCEG------------------LL 138 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTT---SCTTCCEEECCSSBCHHHHHHH--HHHH------------------HT
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHc---cCCceeEEECCCCcCchHHHHH--HHHH------------------Hh
Confidence 57777777777762 2232222 2345555555555554321110 0000 01
Q ss_pred cccccccEEEccccCCCCCCChhhhh--hCCCCCCEEECCCCCCCCccCcc-------CCCCCCEEEecCCeecccCCCC
Q 003307 258 NFVFSLRILRLGSNQLSGSLPVALLQ--ESSMMLSELDLSLNQLEGPVGSI-------TSATLKKVNLSSNKLSGSLPAR 328 (832)
Q Consensus 258 ~~l~~L~~L~L~~N~l~~~~p~~~~~--~~~~~L~~L~L~~N~l~~~~~~~-------~~~~L~~L~L~~N~l~~~~p~~ 328 (832)
...++|++|++++|++++.....+.. ..+++|++|++++|.++...... ...+|++|++++|.+++.....
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 11234445555555444322111100 22344555555555544321100 1236667777777665421000
Q ss_pred CCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCC-----cccccCCCCCCEEEccCCcCCCC----cccccC
Q 003307 329 VGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV-----PNQTSQFLRLTSFKVSNNSLEGD----LPAVLG 399 (832)
Q Consensus 329 l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~ 399 (832)
++..+...++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+.
T Consensus 219 -----------------l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 219 -----------------LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp -----------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred -----------------HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 0111112236888888888876542 33344689999999999999864 577788
Q ss_pred CCCCCCEEEccCCcccccCcccccC-----CCCCCeEeccCCccccc----CCcccccCCCCCcccCcccccEEEccCCc
Q 003307 400 TYPELKVIDLSLNHLNGFLLPSFFT-----STKLTDLNLSGNNFSGP----LPLQEIQNNPSTGSTQNLSLTSLDLAYNS 470 (832)
Q Consensus 400 ~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 470 (832)
.+++|++|++++|.+++..+..+.. .++|+.|+|++|.+++. ++..+..+. +|++|||++|+
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~---------~L~~L~Ls~n~ 352 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR---------FLLELQISNNR 352 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS---------SCCEEECCSSB
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC---------CccEEEccCCc
Confidence 8999999999999998765544433 37999999999999865 222222222 49999999999
Q ss_pred CcccCChhhhc-----CCCCCEEeCcCCcCcc----cCCCCcc--CCCcEEEcCCCccccc
Q 003307 471 LSGRLLPGISK-----FHNLVYLNLSNNKFEG----SIPDGLP--NGLKEFNVSFNNLSGV 520 (832)
Q Consensus 471 l~~~~p~~l~~-----l~~L~~L~Ls~N~l~g----~ip~~~~--~~L~~l~ls~N~l~g~ 520 (832)
+++..+..+.. .++|+.|+|++|.+++ .+|..+. ++|++|++++|++++.
T Consensus 353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 99876666654 6799999999999986 6666654 7899999999999865
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.6e-28 Score=261.80 Aligned_cols=233 Identities=22% Similarity=0.227 Sum_probs=181.7
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
++.|.|.|.+|.|+...++++ |..+ .++|++|+|++|.++...+ .|..+++|++|+|++|.++..
T Consensus 2 P~~C~C~~~~l~c~~~~l~~i------------p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 2 PSRCSCSGTEIRCNSKGLTSV------------PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp CTTCEEETTEEECCSSCCSSC------------CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred cCCCeeCCCEEEcCCCCcccC------------CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc
Confidence 457888999998874433322 1112 2689999999999997666 589999999999999999844
Q ss_pred --CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccc-hhhhcCCCCCEEECccCcCccccCCCC
Q 003307 129 --IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQFSGSLDLGL 205 (832)
Q Consensus 129 --~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 205 (832)
.+..+..+++|++|+|++|.++. +|..|.++++|++|+|++|++++..+ ..+..+++|++|++++|.+++..+..+
T Consensus 68 ~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 68 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp EEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred cCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc
Confidence 36778889999999999999984 67779999999999999999987665 678899999999999999987666554
Q ss_pred CCCCCCCCccEEECCCCCCee-ccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhh
Q 003307 206 GDSSFISSIQYLNISENSLVG-ELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQ 283 (832)
Q Consensus 206 ~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 283 (832)
. .+++|++|++++|.+++ ..+.. +..+++|+.|++++|.+++..| .+..+++|+.|+|++|++++..+..+
T Consensus 147 ~---~l~~L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 219 (306)
T 2z66_A 147 N---GLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-- 219 (306)
T ss_dssp T---TCTTCCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG--
T ss_pred c---cCcCCCEEECCCCccccccchhH--HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc--
Confidence 4 45788899999998876 34544 7788888888888888888766 77888888888888888885544444
Q ss_pred hCCCCCCEEECCCCCCCCccC
Q 003307 284 ESSMMLSELDLSLNQLEGPVG 304 (832)
Q Consensus 284 ~~~~~L~~L~L~~N~l~~~~~ 304 (832)
..+++|+.|++++|++++..+
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSS
T ss_pred cCcccCCEeECCCCCCcccCH
Confidence 456667777777776665444
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.1e-28 Score=265.24 Aligned_cols=260 Identities=19% Similarity=0.176 Sum_probs=150.2
Q ss_pred CCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECc
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLS 193 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 193 (832)
+|++|+|++|.|++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555554444455555555555555555555555555555555555555555555444445555555555555
Q ss_pred cCcCccccCCCCCCCCCCCCccEEECCCCC-CeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcccc
Q 003307 194 NNQFSGSLDLGLGDSSFISSIQYLNISENS-LVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSN 271 (832)
Q Consensus 194 ~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N 271 (832)
+|++++ +|. ...+..+++|++|++++|. +....+.. +..+++|+.|++++|.+++..| .+..+++|++|++++|
T Consensus 133 ~n~l~~-l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 133 GNPYKT-LGE-TSLFSHLTKLQILRVGNMDTFTKIQRKD--FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp TCCCSS-SCS-SCSCTTCTTCCEEEEEESSSCCEECTTT--TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCCcc-cCc-hhhhccCCCCcEEECCCCccccccCHHH--ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 555552 111 0112334566666666653 33322223 6667777777777777777666 6777778888888888
Q ss_pred CCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhcc
Q 003307 272 QLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQN 351 (832)
Q Consensus 272 ~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~ 351 (832)
++. .+|..++ ..+++|+.|++++|.+++... ..+....
T Consensus 209 ~l~-~~~~~~~-~~~~~L~~L~L~~n~l~~~~~----------------------~~l~~~~------------------ 246 (353)
T 2z80_A 209 QHI-LLLEIFV-DVTSSVECLELRDTDLDTFHF----------------------SELSTGE------------------ 246 (353)
T ss_dssp CST-THHHHHH-HHTTTEEEEEEESCBCTTCCC----------------------C------------------------
T ss_pred ccc-cchhhhh-hhcccccEEECCCCccccccc----------------------ccccccc------------------
Confidence 875 4554443 234556666666665554221 1110000
Q ss_pred ccCcccEEEcCCCcCCC----CCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCc
Q 003307 352 WGNYVEDIHLSSNFLTG----MVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419 (832)
Q Consensus 352 ~~~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 419 (832)
....++.++|+++.+++ .+|..+..+++|++|++++|+++...+..|..+++|++|++++|.+.+..+
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 00124444444444443 356677888889999999998884433445888899999999998887543
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=9.6e-28 Score=261.31 Aligned_cols=270 Identities=22% Similarity=0.197 Sum_probs=193.2
Q ss_pred CCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcccc
Q 003307 122 HNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201 (832)
Q Consensus 122 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 201 (832)
+|.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..
T Consensus 40 ~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 40 SGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp STTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 33444 3344443 58999999999999887779999999999999999999988999999999999999999998543
Q ss_pred CCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCc-ccccCC-CccccccccEEEccccCCCCCCCh
Q 003307 202 DLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH-LVGAIP-SFNFVFSLRILRLGSNQLSGSLPV 279 (832)
Q Consensus 202 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~ 279 (832)
+.. +..+++|++|++++|.+++ ++....+..+++|+.|++++|. +.+..+ .+..+++|++|++++|++++..|.
T Consensus 117 ~~~---~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 117 SSW---FKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp HHH---HTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred HhH---hCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 322 3456899999999999984 4432348899999999999994 666656 789999999999999999977676
Q ss_pred hhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEE
Q 003307 280 ALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDI 359 (832)
Q Consensus 280 ~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L 359 (832)
.+ ..+++|++|++++|.++. .....+...++|+.|
T Consensus 193 ~l--~~l~~L~~L~l~~n~l~~-------------------------------------------~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 193 SL--KSIQNVSHLILHMKQHIL-------------------------------------------LLEIFVDVTSSVECL 227 (353)
T ss_dssp TT--TTCSEEEEEEEECSCSTT-------------------------------------------HHHHHHHHTTTEEEE
T ss_pred HH--hccccCCeecCCCCcccc-------------------------------------------chhhhhhhcccccEE
Confidence 65 344444444444444321 112222223356666
Q ss_pred EcCCCcCCCCCccccc---CCCCCCEEEccCCcCCC----CcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 360 HLSSNFLTGMVPNQTS---QFLRLTSFKVSNNSLEG----DLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 360 ~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
++++|.+++..+..+. ....++.++++++.+++ .+|..+..+++|+.|++++|+++...+..|..+++|++|+
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE
Confidence 6666666655443332 34567777777777765 3566677777777777777777754444456777777777
Q ss_pred ccCCcccccCC
Q 003307 433 LSGNNFSGPLP 443 (832)
Q Consensus 433 Ls~N~l~~~~p 443 (832)
|++|.+++..|
T Consensus 308 L~~N~~~~~~~ 318 (353)
T 2z80_A 308 LHTNPWDCSCP 318 (353)
T ss_dssp CCSSCBCCCHH
T ss_pred eeCCCccCcCC
Confidence 77777765543
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.1e-27 Score=262.86 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=68.5
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|+.|+|++|.|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|+
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 45666666666666667777777888888888888887777788888888888888888888777778888889999999
Q ss_pred CCccccc
Q 003307 435 GNNFSGP 441 (832)
Q Consensus 435 ~N~l~~~ 441 (832)
+|.+...
T Consensus 299 ~Np~~Cd 305 (452)
T 3zyi_A 299 HNPWNCD 305 (452)
T ss_dssp SSCEECS
T ss_pred CCCcCCC
Confidence 9887643
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=260.05 Aligned_cols=229 Identities=21% Similarity=0.225 Sum_probs=145.2
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
++++.|+|++|++.+..+ .|.++++|++|+|++|.|+++.+..|.++++|++|+|++|+|+...+..|.++++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 466677777777766665 6667777777777777776666666777777777777777776555556666666777766
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCC
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 248 (832)
++|+++...+..|.++++|++|+|++|+..+.++ + .
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------------~-~---------------- 179 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS---------------------------E-G---------------- 179 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---------------------------T-T----------------
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeC---------------------------c-c----------------
Confidence 6666665555555555555555555432221111 1 0
Q ss_pred cccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCC
Q 003307 249 HLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPAR 328 (832)
Q Consensus 249 ~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~ 328 (832)
.|..+++|++|+|++|+++ .+|. + ..+
T Consensus 180 -------~~~~l~~L~~L~L~~n~l~-~~~~-~--~~l------------------------------------------ 206 (440)
T 3zyj_A 180 -------AFEGLSNLRYLNLAMCNLR-EIPN-L--TPL------------------------------------------ 206 (440)
T ss_dssp -------TTTTCSSCCEEECTTSCCS-SCCC-C--TTC------------------------------------------
T ss_pred -------hhhcccccCeecCCCCcCc-cccc-c--CCC------------------------------------------
Confidence 2333444445555555443 2221 0 000
Q ss_pred CCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEE
Q 003307 329 VGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVID 408 (832)
Q Consensus 329 l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 408 (832)
.+|+.|+|++|.|++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+
T Consensus 207 -------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 207 -------------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp -------------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred -------------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 0355555555555555666677777777777777777777777777888888888
Q ss_pred ccCCcccccCcccccCCCCCCeEeccCCcccc
Q 003307 409 LSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSG 440 (832)
Q Consensus 409 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (832)
|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 88888887777777888888888888888764
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.9e-26 Score=245.83 Aligned_cols=249 Identities=21% Similarity=0.199 Sum_probs=139.9
Q ss_pred CEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc--cchhhhcCCCCCEEECc
Q 003307 116 EFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD--IMHLLSQLGSVVHVDLS 193 (832)
Q Consensus 116 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~l~~L~~L~Ls 193 (832)
+.++++++.++.+ |..+. ++|++|+|++|.++...+..|.++++|++|+|++|+++.. .+..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3455555555532 33332 4666666666666644444566667777777777766532 24555566666666666
Q ss_pred cCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccC
Q 003307 194 NNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQ 272 (832)
Q Consensus 194 ~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~ 272 (832)
+|.+++ +|..+ ..+++|++|++++|.+++... ...+..+++|+.|++++|.+.+..+ .+..+++|++|++
T Consensus 87 ~n~i~~-l~~~~---~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---- 157 (306)
T 2z66_A 87 FNGVIT-MSSNF---LGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM---- 157 (306)
T ss_dssp SCSEEE-EEEEE---ETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC----
T ss_pred CCcccc-Chhhc---CCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC----
Confidence 666652 22211 122344444444444332111 0113344444444444444443333 2233333333333
Q ss_pred CCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecc-cCCCCCCCCCEEecCCCCCcCcchhhcc
Q 003307 273 LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG-SLPARVGHCTIVDLSNNRLSGDLSRMQN 351 (832)
Q Consensus 273 l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~L~~N~l~~~~~~~~~ 351 (832)
++|.+++ .+|..+..++
T Consensus 158 --------------------------------------------~~n~l~~~~~~~~~~~l~------------------ 175 (306)
T 2z66_A 158 --------------------------------------------AGNSFQENFLPDIFTELR------------------ 175 (306)
T ss_dssp --------------------------------------------TTCEEGGGEECSCCTTCT------------------
T ss_pred --------------------------------------------CCCccccccchhHHhhCc------------------
Confidence 3333332 2233333332
Q ss_pred ccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCC-CCCe
Q 003307 352 WGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTST-KLTD 430 (832)
Q Consensus 352 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~ 430 (832)
+|+.|+|++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..++ +|+.
T Consensus 176 ---~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 176 ---NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp ---TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred ---CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 577777777777777777777777788888888887776666777778888888888888777777777763 7777
Q ss_pred EeccCCccccc
Q 003307 431 LNLSGNNFSGP 441 (832)
Q Consensus 431 L~Ls~N~l~~~ 441 (832)
|+|++|.+++.
T Consensus 253 L~L~~N~~~~~ 263 (306)
T 2z66_A 253 LNLTQNDFACT 263 (306)
T ss_dssp EECTTCCEECS
T ss_pred EEccCCCeecc
Confidence 77777777654
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=6.6e-26 Score=255.41 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=36.4
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCccc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN 415 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 415 (832)
+|+.|+|++|.+++..+..|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|.+.
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 4555666666666555555666666666666666666555555555666666666666554
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.3e-26 Score=244.34 Aligned_cols=252 Identities=21% Similarity=0.161 Sum_probs=204.5
Q ss_pred EEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 68 ~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
+.+++++.++.. + |. .-.++|+.|+|++|.+++..+ .|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~~~c~~~~l~~-i-p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-V-PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-C-CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-C-Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 456666666653 2 11 234689999999999999887 799999999999999999999899999999999999999
Q ss_pred cc-ccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCe
Q 003307 147 NS-FEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLV 225 (832)
Q Consensus 147 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 225 (832)
|. ++...|..|.++++|++|+|++|++++..+..+.++++|++|++++|.+++..+..+ ..+++|+.|++++|.++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF---RDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh---ccCCCccEEECCCCccc
Confidence 97 887778999999999999999999999989999999999999999999986544434 45689999999999998
Q ss_pred eccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccC
Q 003307 226 GELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVG 304 (832)
Q Consensus 226 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~ 304 (832)
+..+.. +..+++|+.|++++|.+++..| .+..+++|+.|++++|++++..+..+ ..+++|+.|++++|.+....+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 167 SVPERA--FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp EECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSCEECSGG
T ss_pred ccCHHH--hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc--ccCcccCEEeccCCCccCCCC
Confidence 655444 8889999999999999998877 88899999999999999996444445 567889999999998876443
Q ss_pred ccC-CCCCCEEEecCCeecccCCCCCC
Q 003307 305 SIT-SATLKKVNLSSNKLSGSLPARVG 330 (832)
Q Consensus 305 ~~~-~~~L~~L~L~~N~l~~~~p~~l~ 330 (832)
... ...++.+....+.+.+..|..+.
T Consensus 243 ~~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 243 ARPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp GHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred cHHHHHHHHhcccccCccccCCchHhC
Confidence 211 12344444555666666665443
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=4.7e-29 Score=291.80 Aligned_cols=428 Identities=15% Similarity=0.114 Sum_probs=276.5
Q ss_pred CCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCC---cccCC-CCC------------CCCCCCEEE
Q 003307 56 NWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQL---MGNIT-DIG------------SIQSLEFLD 119 (832)
Q Consensus 56 ~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~-~~~------------~l~~L~~L~ 119 (832)
.|.++.+.... .+.+.+. . ...++..+..+++|+.|+|+++.. .+.+| .++ .+++|++|+
T Consensus 43 ~W~~~~~~~~~--~l~~~~~-~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~ 118 (592)
T 3ogk_B 43 RWFKIDSETRE--HVTMALC-Y-TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH 118 (592)
T ss_dssp HHHHHHHHHCC--EEEESCG-G-GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHhhhcccc--EEEEeec-c-ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEE
Confidence 68777653222 2222221 1 122234556788899999987543 12333 333 688999999
Q ss_pred CCCCCCCccCcccccCC--CCCCEEEccccc-ccc-cCCCCCCCCCCCCEeeCcCCCCCCc----cchhhhcCCCCCEEE
Q 003307 120 LSHNLFHGLIPSGIVSL--KNLMLLNISSNS-FEG-TFPSGFGGLGKLKYLDLRANRFGGD----IMHLLSQLGSVVHVD 191 (832)
Q Consensus 120 Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~-l~~-~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~ 191 (832)
|++|.+++..+..+..+ .+|++|+|++|. ++. .++....++++|++|+|++|.+++. ++..+..+++|++|+
T Consensus 119 L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~ 198 (592)
T 3ogk_B 119 FRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198 (592)
T ss_dssp EESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEE
T ss_pred eeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEE
Confidence 99998887766666653 349999998886 221 1222234788999999999988765 455667889999999
Q ss_pred CccCcCccccCCCCC-CCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc---ccCC-CccccccccEE
Q 003307 192 LSNNQFSGSLDLGLG-DSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV---GAIP-SFNFVFSLRIL 266 (832)
Q Consensus 192 Ls~N~l~~~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~-~~~~l~~L~~L 266 (832)
+++|.+++.-...+. .+..+++|+.|++++|.+.+ ++.. +..+++|+.|+++.+... +..+ .+..+++|+.|
T Consensus 199 L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L 275 (592)
T 3ogk_B 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF--FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275 (592)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH--HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEE
T ss_pred eeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH--HhhhhHHHhhcccccccccchHHHHHHhhcccccccc
Confidence 999988622111111 01235788999999988875 3333 667888999988864332 1112 56777888888
Q ss_pred EccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccC---ccCCCCCCEEEecCCeeccc-CC---CCCCCCCEEecC-
Q 003307 267 RLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVG---SITSATLKKVNLSSNKLSGS-LP---ARVGHCTIVDLS- 338 (832)
Q Consensus 267 ~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~---~~~~~~L~~L~L~~N~l~~~-~p---~~l~~l~~L~L~- 338 (832)
+++++... .+|..+ ..+++|++|++++|.+++... ....++|+.|+++ +.+.+. ++ ..+.+|+.|+++
T Consensus 276 ~l~~~~~~-~l~~~~--~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 276 GLSYMGPN-EMPILF--PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp EETTCCTT-TGGGGG--GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred Cccccchh-HHHHHH--hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence 88876433 555544 456788899998888764332 2345688888888 444321 11 234678888888
Q ss_pred ----------CCCCcCc-chhhccccCcccEEEcCCCcCCCCCcccccC-CCCCCEEEcc----CCcCCCC-----cccc
Q 003307 339 ----------NNRLSGD-LSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQ-FLRLTSFKVS----NNSLEGD-----LPAV 397 (832)
Q Consensus 339 ----------~N~l~~~-~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----~p~~ 397 (832)
.|.+++. +..+...+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 3566543 2333444567888888888888766666655 7888888886 6777763 4444
Q ss_pred cCCCCCCCEEEccCC--cccccCccccc-CCCCCCeEeccCCcccccC-CcccccCCCCCcccCcccccEEEccCCcCcc
Q 003307 398 LGTYPELKVIDLSLN--HLNGFLLPSFF-TSTKLTDLNLSGNNFSGPL-PLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG 473 (832)
Q Consensus 398 ~~~l~~L~~L~Ls~N--~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 473 (832)
+..+++|+.|++++| .+++..+..+. .+++|+.|+|++|++++.. +.....+ .+|++|+|++|.+++
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~---------~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC---------PNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC---------TTCCEEEEESCCCBH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC---------cccCeeeccCCCCcH
Confidence 666888888888754 36655444444 3788888888888876522 2111112 248888888888875
Q ss_pred cC-ChhhhcCCCCCEEeCcCCcCcccCCCCc
Q 003307 474 RL-LPGISKFHNLVYLNLSNNKFEGSIPDGL 503 (832)
Q Consensus 474 ~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 503 (832)
.. +..+..+++|+.|+|++|+++..-...+
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 53 3344678888888888888876533333
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.1e-25 Score=257.76 Aligned_cols=263 Identities=25% Similarity=0.255 Sum_probs=150.0
Q ss_pred CCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcC
Q 003307 91 MLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRA 170 (832)
Q Consensus 91 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 170 (832)
+++.|++++|.++..+..+. ++|++|+|++|.|+.+ |. .+++|++|+|++|+|++ +|. .+++|++|+|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence 46777777777774333454 7888888888888744 43 46788888888888874 454 567788888888
Q ss_pred CCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcc
Q 003307 171 NRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHL 250 (832)
Q Consensus 171 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 250 (832)
|++++... .+++|++|++++|++++ +|.. +++|++|++++|.+++ ++. .+.+|+.|++++|.+
T Consensus 111 N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~------l~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 111 NPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL------PPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQL 173 (622)
T ss_dssp CCCCCCCC----CCTTCCEEECCSSCCSC-CCCC------CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCC
T ss_pred CcCCCCCC----CCCCcCEEECCCCCCCc-CCCC------CCCCCEEECcCCcCCC-cCC-----ccCCCCEEECCCCCC
Confidence 88775433 45677777777777763 2321 2556666666665543 111 123455555555555
Q ss_pred cccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCC
Q 003307 251 VGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVG 330 (832)
Q Consensus 251 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~ 330 (832)
++ +| ..+++|+.|++++|++++ +|.. . .+|+.|++++|.++ .+|..+.
T Consensus 174 ~~-l~--~~~~~L~~L~Ls~N~l~~-l~~~-----~----------------------~~L~~L~L~~N~l~-~l~~~~~ 221 (622)
T 3g06_A 174 TS-LP--MLPSGLQELSVSDNQLAS-LPTL-----P----------------------SELYKLWAYNNRLT-SLPALPS 221 (622)
T ss_dssp SC-CC--CCCTTCCEEECCSSCCSC-CCCC-----C----------------------TTCCEEECCSSCCS-SCCCCCT
T ss_pred CC-Cc--ccCCCCcEEECCCCCCCC-CCCc-----c----------------------chhhEEECcCCccc-ccCCCCC
Confidence 43 22 223444444444444442 2211 1 23444444444443 2222222
Q ss_pred CCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEcc
Q 003307 331 HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLS 410 (832)
Q Consensus 331 ~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 410 (832)
+|+.|+|++|.|++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|+
T Consensus 222 ------------------------~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 222 ------------------------GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp ------------------------TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred ------------------------CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 45555555555554 23 33456666666666666 3343 44566666666
Q ss_pred CCcccccCcccccCCCCCCeEeccCCcccccCCcc
Q 003307 411 LNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQ 445 (832)
Q Consensus 411 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 445 (832)
+|+|+ .+|..+..+++|+.|+|++|.+++.+|..
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 66666 34556666666666666666666655543
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1e-26 Score=249.87 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=96.1
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
+++++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|+++ .+|..+.++++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 55666666666666 44555666667777777777766 56666777777777777777776 55666777777777777
Q ss_pred ccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcccc
Q 003307 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSN 271 (832)
Q Consensus 193 s~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N 271 (832)
++|++.+.+|..++.. . ... .+..+++|+.|++++|.++ .+| .+..+++|++|+|++|
T Consensus 158 ~~n~~~~~~p~~~~~~---------~---------~~~--~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 158 RACPELTELPEPLAST---------D---------ASG--EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp EEETTCCCCCSCSEEE---------C----------CC--CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred CCCCCccccChhHhhc---------c---------chh--hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence 7776666666544321 0 011 1556778888888888887 455 7788888888888888
Q ss_pred CCCCCCChhh
Q 003307 272 QLSGSLPVAL 281 (832)
Q Consensus 272 ~l~~~~p~~~ 281 (832)
++++ +|..+
T Consensus 217 ~l~~-l~~~l 225 (328)
T 4fcg_A 217 PLSA-LGPAI 225 (328)
T ss_dssp CCCC-CCGGG
T ss_pred CCCc-Cchhh
Confidence 8873 55444
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.2e-25 Score=250.22 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=90.0
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|+.|+|++|.++.. | .+..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus 186 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 186 NLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred ccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 455666666666533 3 37788999999999999999889999999999999999999999999999999999999999
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcc
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG 473 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 473 (832)
+|++++..+..+.... +|+.|+|++|.+..
T Consensus 264 ~N~l~~~~~~~~~~l~---------~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLH---------HLERIHLHHNPWNC 293 (440)
T ss_dssp TSCCCCCCTTTTSSCT---------TCCEEECCSSCEEC
T ss_pred CCCCCccChhHhcccc---------CCCEEEcCCCCccC
Confidence 9999965544333322 49999999999975
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.6e-25 Score=255.70 Aligned_cols=269 Identities=24% Similarity=0.268 Sum_probs=183.9
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
.+++.|++++|.|+ .+|..+. ++|++|+|++|.|+. +|. .+++|++|+|++|+|++... .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 46899999999999 5576665 799999999999994 555 57899999999999885433 6788888888
Q ss_pred ccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccC
Q 003307 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQ 272 (832)
Q Consensus 193 s~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~ 272 (832)
++|.+++. |. .+++|+.|++++|++++ ++.. +++|+.|++++|.+++
T Consensus 109 s~N~l~~l-~~------~l~~L~~L~L~~N~l~~-lp~~-----l~~L~~L~Ls~N~l~~-------------------- 155 (622)
T 3g06_A 109 FSNPLTHL-PA------LPSGLCKLWIFGNQLTS-LPVL-----PPGLQELSVSDNQLAS-------------------- 155 (622)
T ss_dssp CSCCCCCC-CC------CCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCSC--------------------
T ss_pred cCCcCCCC-CC------CCCCcCEEECCCCCCCc-CCCC-----CCCCCEEECcCCcCCC--------------------
Confidence 88888742 22 23556666666666543 2211 2444444444444443
Q ss_pred CCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccc
Q 003307 273 LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNW 352 (832)
Q Consensus 273 l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~ 352 (832)
+|. ...+|+.|++++|.+++.. ....+|+.|++++|++++ +|..+
T Consensus 156 ----l~~-----~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~-l~~~~----------------------- 200 (622)
T 3g06_A 156 ----LPA-----LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLAS-LPTLP----------------------- 200 (622)
T ss_dssp ----CCC-----CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCCCC-----------------------
T ss_pred ----cCC-----ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCC-CCCcc-----------------------
Confidence 221 1123444444444443311 112344444444444442 22211
Q ss_pred cCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 353 GNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 353 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
.+|+.|++++|.++. +|. .+++|+.|+|++|+|++ +| ..+++|+.|++++|+|+.+ |. .+++|+.|+
T Consensus 201 -~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~ 267 (622)
T 3g06_A 201 -SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLS 267 (622)
T ss_dssp -TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred -chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEe
Confidence 267888888888874 343 24789999999999996 55 4568999999999999964 43 578999999
Q ss_pred ccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCC
Q 003307 433 LSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFH 483 (832)
Q Consensus 433 Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~ 483 (832)
|++|+|+ .+|..+.... +|+.|+|++|.+++.+|..+..++
T Consensus 268 Ls~N~L~-~lp~~l~~l~---------~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 268 VYRNQLT-RLPESLIHLS---------SETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSSCCC-SCCGGGGGSC---------TTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCC-cCCHHHhhcc---------ccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999999 6787665544 499999999999999998887765
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.7e-26 Score=239.42 Aligned_cols=255 Identities=16% Similarity=0.130 Sum_probs=145.2
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 172 (832)
+.++.+++.++..+..+ .++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56677776666443233 3567777777777776666667777777777777777776666667777777777777765
Q ss_pred -CCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 173 -FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 173 -l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++...+..|..+++|++|++++|.+++..+ .. +..+++|+.|++++|.++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------------~~--~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGP---------------------------GL--FRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---------------------------TT--TTTCTTCCEEECCSSCCC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECH---------------------------hH--hhCCcCCCEEECCCCccc
Confidence 555545555555555555555554442111 11 333444444444444443
Q ss_pred ccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCC
Q 003307 252 GAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVG 330 (832)
Q Consensus 252 ~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~ 330 (832)
+..+ .+..++
T Consensus 143 ~~~~~~~~~l~--------------------------------------------------------------------- 153 (285)
T 1ozn_A 143 ALPDDTFRDLG--------------------------------------------------------------------- 153 (285)
T ss_dssp CCCTTTTTTCT---------------------------------------------------------------------
T ss_pred ccCHhHhccCC---------------------------------------------------------------------
Confidence 2222 122222
Q ss_pred CCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEcc
Q 003307 331 HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLS 410 (832)
Q Consensus 331 ~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 410 (832)
+|+.|+|++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|+++
T Consensus 154 ------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 154 ------------------------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp ------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred ------------------------CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 24444444444444444445556666666666666666666666666777777777
Q ss_pred CCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhc
Q 003307 411 LNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISK 481 (832)
Q Consensus 411 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~ 481 (832)
+|++++..+..+..+++|+.|+|++|.+....+...... .++.++.+.+.+.+..|+.+.+
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~----------~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA----------WLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH----------HHHHCCSEECCCBEEESGGGTT
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH----------HHHhcccccCccccCCchHhCC
Confidence 777776666667777777777777777765433221110 1444555666666666665543
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=9.4e-28 Score=257.03 Aligned_cols=265 Identities=22% Similarity=0.185 Sum_probs=160.7
Q ss_pred CCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcC
Q 003307 92 LCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRA 170 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 170 (832)
++.++++.+.+...+. .+..+++|++|+|++|.|++..|..|..+++|++|+|++|.+++..+ |..+++|++|+|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455566666554443 34445666666666666666666666666666666666666665443 66666666666666
Q ss_pred CCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcc
Q 003307 171 NRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHL 250 (832)
Q Consensus 171 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 250 (832)
|++++.. ..++|++|++++|.++ +..+. .+++|+.|++++|++
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~---------------------------~~~~~-----~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNIS---------------------------RVSCS-----RGQGKKNIYLANNKI 132 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCS---------------------------EEEEC-----CCSSCEEEECCSSCC
T ss_pred Ccccccc-----CCCCcCEEECCCCccC---------------------------CcCcc-----ccCCCCEEECCCCCC
Confidence 6654322 2245555555555544 32221 235566666666666
Q ss_pred cccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCC
Q 003307 251 VGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARV 329 (832)
Q Consensus 251 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l 329 (832)
++..+ .+..+++|++|++++|++++..+..+. ..+++|++|++++|.+++......
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~---------------------- 189 (317)
T 3o53_A 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQVV---------------------- 189 (317)
T ss_dssp CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEEECCCC----------------------
T ss_pred CCccchhhhccCCCCEEECCCCCCCcccHHHHh-hccCcCCEEECCCCcCcccccccc----------------------
Confidence 66555 566677777777777777755444442 234556666666555543211111
Q ss_pred CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEc
Q 003307 330 GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDL 409 (832)
Q Consensus 330 ~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 409 (832)
.++|+.|+|++|.+++..+ .+..+++|++|+|++|+|+ .+|..+..+++|+.|++
T Consensus 190 -----------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 190 -----------------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (317)
T ss_dssp -----------------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred -----------------------cccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence 1156667777777765433 3677777888888888887 46667777788888888
Q ss_pred cCCccc-ccCcccccCCCCCCeEeccC-CcccccCC
Q 003307 410 SLNHLN-GFLLPSFFTSTKLTDLNLSG-NNFSGPLP 443 (832)
Q Consensus 410 s~N~l~-~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p 443 (832)
++|.+. +.++..+..+++|+.|++++ +.++|..|
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 888887 66667777777777777773 34454433
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.9e-27 Score=254.02 Aligned_cols=249 Identities=20% Similarity=0.193 Sum_probs=164.9
Q ss_pred ccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCC-ccCccccc-------CCCCCCEEEcccccccccCCCC
Q 003307 86 IIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFH-GLIPSGIV-------SLKNLMLLNISSNSFEGTFPSG 156 (832)
Q Consensus 86 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~ 156 (832)
++..++|+.|++++|.+ .+| .+... |++|+|++|.++ ..+|..+. ++++|++|+|++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45567888999999999 455 55544 899999999994 55676665 7899999999999999888887
Q ss_pred C--CCCCCCCEeeCcCCCCCCccchhhhcC-----CCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeecc-
Q 003307 157 F--GGLGKLKYLDLRANRFGGDIMHLLSQL-----GSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGEL- 228 (832)
Q Consensus 157 ~--~~l~~L~~L~L~~N~l~~~~~~~l~~l-----~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~- 228 (832)
+ .++++|++|+|++|++++. |..+..+ ++|++|+|++|++++..+..++ .+++|++|++++|++.+.+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR---VFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC---CCSSCCEEECCSCTTCHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc---cCCCCCEEECCCCCcCcchH
Confidence 6 8999999999999999987 7778777 8899999999988865555444 3467777777777765531
Q ss_pred -CCCCCCCCCCCcCEEEccCCcccccC--C--CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCcc
Q 003307 229 -FPHDGMPYFDNLEVFDASNNHLVGAI--P--SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPV 303 (832)
Q Consensus 229 -~~~~~~~~l~~L~~L~Ls~N~l~~~~--~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~ 303 (832)
+....+..+++|+.|++++|++++.. + .+..+++|++|+|++|++++..|...+ ..+++|++|++++|+++
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~--- 266 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLK--- 266 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCS---
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh-hhcCCCCEEECCCCccC---
Confidence 22211356666777777776666321 1 233456666666666666654432221 22345555555555555
Q ss_pred CccCCCCCCEEEecCCeecccCCCCCC-CCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCC
Q 003307 304 GSITSATLKKVNLSSNKLSGSLPARVG-HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG 368 (832)
Q Consensus 304 ~~~~~~~L~~L~L~~N~l~~~~p~~l~-~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~ 368 (832)
.+|..+. +|+.|++++|+|++.+ . +...++|++|+|++|.+++
T Consensus 267 --------------------~ip~~~~~~L~~L~Ls~N~l~~~p-~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 --------------------QVPKGLPAKLSVLDLSYNRLDRNP-S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --------------------SCCSSCCSEEEEEECCSSCCCSCC-C-TTTSCEEEEEECTTCTTTC
T ss_pred --------------------hhhhhccCCceEEECCCCCCCCCh-h-HhhCCCCCEEeccCCCCCC
Confidence 3333222 3444555555554442 1 2233468888888888775
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=2.8e-28 Score=285.19 Aligned_cols=400 Identities=14% Similarity=0.082 Sum_probs=286.3
Q ss_pred CCCCCCCCCEEECCCCCC---CccCccccc------------CCCCCCEEEcccccccccCCCCCCCC--CCCCEeeCcC
Q 003307 108 DIGSIQSLEFLDLSHNLF---HGLIPSGIV------------SLKNLMLLNISSNSFEGTFPSGFGGL--GKLKYLDLRA 170 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~ 170 (832)
.+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+|++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 466789999999988642 133443333 78999999999999987766666653 4599999999
Q ss_pred CC-CCC-ccchhhhcCCCCCEEECccCcCccccCCCCC-CCCCCCCccEEECCCCCCee----ccCCCCCCCCCCCcCEE
Q 003307 171 NR-FGG-DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLG-DSSFISSIQYLNISENSLVG----ELFPHDGMPYFDNLEVF 243 (832)
Q Consensus 171 N~-l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~l~~L~~L~L~~N~l~~----~~~~~~~~~~l~~L~~L 243 (832)
|. ++. ..+.....+++|++|+|++|.+++.-...+. ....+++|+.|++++|.+++ .++.. +..+++|+.|
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~--~~~~~~L~~L 225 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI--ARNCRSLVSV 225 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH--HHHCTTCCEE
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH--HhhCCCCcEE
Confidence 87 221 1233345899999999999998743111000 01235899999999999862 22222 4568999999
Q ss_pred EccCCcccccCCCccccccccEEEccccCCC---CCCChhhhhhCCCCCCEEECCCCCCCCccCc-cCCCCCCEEEecCC
Q 003307 244 DASNNHLVGAIPSFNFVFSLRILRLGSNQLS---GSLPVALLQESSMMLSELDLSLNQLEGPVGS-ITSATLKKVNLSSN 319 (832)
Q Consensus 244 ~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~---~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~-~~~~~L~~L~L~~N 319 (832)
++++|.+.+....+..+++|+.|+++.+... +..+..+ ..+++|+.|+++++........ ...++|++|++++|
T Consensus 226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL--VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC--CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh--hccccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence 9999999875447888999999999864332 1222233 4567899999988644433222 23468999999999
Q ss_pred eecccCC----CCCCCCCEEecCCCCCc-CcchhhccccCcccEEEcC-----------CCcCCCC-CcccccCCCCCCE
Q 003307 320 KLSGSLP----ARVGHCTIVDLSNNRLS-GDLSRMQNWGNYVEDIHLS-----------SNFLTGM-VPNQTSQFLRLTS 382 (832)
Q Consensus 320 ~l~~~~p----~~l~~l~~L~L~~N~l~-~~~~~~~~~~~~L~~L~Ls-----------~N~l~~~-~p~~~~~l~~L~~ 382 (832)
.+++..+ ..+.+|+.|+++ +.+. +.++.+...+++|++|+|+ .|.+++. ++.....+++|++
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred cCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 9865433 567889999999 4443 3344555556689999999 3666644 2333456899999
Q ss_pred EEccCCcCCCCcccccCC-CCCCCEEEcc----CCccccc-----CcccccCCCCCCeEeccCCc--ccccCCcccccCC
Q 003307 383 FKVSNNSLEGDLPAVLGT-YPELKVIDLS----LNHLNGF-----LLPSFFTSTKLTDLNLSGNN--FSGPLPLQEIQNN 450 (832)
Q Consensus 383 L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~ 450 (832)
|+++.|.+++..+..+.. +++|+.|+++ .|++++. ++..+.++++|+.|+|++|. +++..+..+...
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~- 461 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY- 461 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS-
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh-
Confidence 999999999877777765 8999999996 7788874 33446779999999998543 655433333221
Q ss_pred CCCcccCcccccEEEccCCcCccc-CChhhhcCCCCCEEeCcCCcCcccCCCCc---cCCCcEEEcCCCccccc
Q 003307 451 PSTGSTQNLSLTSLDLAYNSLSGR-LLPGISKFHNLVYLNLSNNKFEGSIPDGL---PNGLKEFNVSFNNLSGV 520 (832)
Q Consensus 451 ~~~~~~~~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~---~~~L~~l~ls~N~l~g~ 520 (832)
..+|++|+|++|++++. ++..+..+++|+.|+|++|++++.....+ .++|++|++++|+++..
T Consensus 462 -------~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 462 -------SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp -------CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred -------CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 12499999999999874 45556889999999999999876533322 26899999999998754
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.6e-24 Score=226.21 Aligned_cols=216 Identities=19% Similarity=0.193 Sum_probs=173.5
Q ss_pred CCCCCCCCccccC-CCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 51 DGCPRNWFGITCT-NGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 51 ~~c~~~w~gv~C~-~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
+.| .|.|+.|+ ...++.++++++++.. +| ..+. ++|+.|+|++|++++..+ .|..+++|++|+|++|.|+.+
T Consensus 3 ~~C--~~~~~~C~c~~~~~~l~~~~~~l~~-ip-~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 3 ALC--KKDGGVCSCNNNKNSVDCSSKKLTA-IP-SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp CCB--GGGTCSBEEETTTTEEECTTSCCSS-CC-SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred ccC--CCCCCCCEeCCCCCEEEccCCCCCc-cC-CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee
Confidence 455 89999996 4456789999988875 32 2232 578999999999988877 799999999999999999987
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCC
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 208 (832)
.+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+++..+.. +
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~ 153 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV---F 153 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---T
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH---c
Confidence 7777889999999999999999877778899999999999999999888888999999999999999988543332 3
Q ss_pred CCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCC
Q 003307 209 SFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSL 277 (832)
Q Consensus 209 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~ 277 (832)
..+++|+.|++++|.+++..+.. +..+++|+.|++++|++++..+ .+..+++|+.|+|++|.+....
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGA--FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred cCCcccceeEecCCcCcEeChhH--hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 45688888888888887644433 7778888888888888886655 5777788888888888876543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-26 Score=248.34 Aligned_cols=155 Identities=20% Similarity=0.193 Sum_probs=78.7
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccc-CCCCCCCEEEccCCcccccCcccccCCCCCCeEec
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVL-GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNL 433 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 433 (832)
+|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++++.. ....+++|++|+|
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~L 198 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDL 198 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEEC
Confidence 35555555555555555555555555555555555554444444 24555555555555555441 1223555555555
Q ss_pred cCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCc-ccCCCCcc--CCCcEE
Q 003307 434 SGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFE-GSIPDGLP--NGLKEF 510 (832)
Q Consensus 434 s~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~--~~L~~l 510 (832)
++|++++..+ .+.... +|+.|+|++|++++ +|..+..+++|+.|+|++|+++ +.+|.++. +.|+.+
T Consensus 199 s~N~l~~l~~-~~~~l~---------~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 199 SSNKLAFMGP-EFQSAA---------GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CSSCCCEECG-GGGGGT---------TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred CCCcCCcchh-hhcccC---------cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 5555554322 222221 25566666666652 4555556666666666666665 33333332 345555
Q ss_pred EcC-CCccccccC
Q 003307 511 NVS-FNNLSGVVP 522 (832)
Q Consensus 511 ~ls-~N~l~g~~p 522 (832)
+++ .+.++|..|
T Consensus 268 ~l~~~~~l~~~~~ 280 (317)
T 3o53_A 268 AKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHSSSS
T ss_pred ECCCchhccCCch
Confidence 555 334455444
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.1e-26 Score=248.03 Aligned_cols=254 Identities=21% Similarity=0.193 Sum_probs=135.3
Q ss_pred CCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccccccc-ccCCCCCC-------CCCCCCEeeCcCCCCCCccchhh
Q 003307 110 GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFE-GTFPSGFG-------GLGKLKYLDLRANRFGGDIMHLL 181 (832)
Q Consensus 110 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~~~~~~l 181 (832)
+..++|++|++++|.+ .+|..+... |+.|+|++|.++ ..+|..+. ++++|++|+|++|++++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445666666666666 445544433 666666666663 23333333 45555555555555555444443
Q ss_pred --hcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-Ccc
Q 003307 182 --SQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFN 258 (832)
Q Consensus 182 --~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~ 258 (832)
..+++|++|+|++|++++. |..++.+.. ..+++|++|++++|++.+..+ .+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~------------------------~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQ------------------------WLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHT------------------------TCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHH------------------------hhcCCCcEEEeeCCCCccchHHHhc
Confidence 4555555555555555433 221111100 001455555555555555443 455
Q ss_pred ccccccEEEccccCCCCCCC--hhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEe
Q 003307 259 FVFSLRILRLGSNQLSGSLP--VALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVD 336 (832)
Q Consensus 259 ~l~~L~~L~L~~N~l~~~~p--~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 336 (832)
.+++|++|+|++|++.+.++ ..+....+++|+ .|+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~-------------------------------------------~L~ 207 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQ-------------------------------------------VLA 207 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC-------------------------------------------EEE
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCC-------------------------------------------EEE
Confidence 55555555555555543311 111001222222 222
Q ss_pred cCCCCCcCc---chhhccccCcccEEEcCCCcCCCCCc-ccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCC
Q 003307 337 LSNNRLSGD---LSRMQNWGNYVEDIHLSSNFLTGMVP-NQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLN 412 (832)
Q Consensus 337 L~~N~l~~~---~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 412 (832)
+++|++++. ...++...++|+.|+|++|.+++.+| ..+..+++|++|+|++|+|+ .+|..+. ++|++|++++|
T Consensus 208 L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp CTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS
T ss_pred CCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCC
Confidence 222222211 11222223467778888888777664 44556777888888888887 6666655 67888888888
Q ss_pred cccccCcccccCCCCCCeEeccCCcccc
Q 003307 413 HLNGFLLPSFFTSTKLTDLNLSGNNFSG 440 (832)
Q Consensus 413 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (832)
+|++. |. +..+++|++|+|++|++++
T Consensus 285 ~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 285 RLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88776 43 7777777777777777764
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.7e-26 Score=255.46 Aligned_cols=237 Identities=24% Similarity=0.204 Sum_probs=146.1
Q ss_pred CCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEE
Q 003307 111 SIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHV 190 (832)
Q Consensus 111 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 190 (832)
.+++|++|+|++|.|++..|..|..+++|++|+|++|.+++..| |.++++|++|+|++|.|++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34467777777777777666777777777777777777766554 6667777777777776654322 2455555
Q ss_pred ECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcc
Q 003307 191 DLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLG 269 (832)
Q Consensus 191 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~ 269 (832)
++++|.+++. .+. .+++|+.|++++|.+++..| .+..+++|+.|+|+
T Consensus 105 ~L~~N~l~~~---------------------------~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 105 HAANNNISRV---------------------------SCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp ECCSSCCCCE---------------------------EEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred ECcCCcCCCC---------------------------Ccc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 5555555532 221 23556666666666666655 66677777777777
Q ss_pred ccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhh
Q 003307 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRM 349 (832)
Q Consensus 270 ~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~ 349 (832)
+|.+++..|..+. ..+++|+.|+|++|.+++..+...
T Consensus 153 ~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~~~~~~~~------------------------------------------ 189 (487)
T 3oja_A 153 LNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQVV------------------------------------------ 189 (487)
T ss_dssp TSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEEECCCC------------------------------------------
T ss_pred CCCCCCcChHHHh-hhCCcccEEecCCCcccccccccc------------------------------------------
Confidence 7777766665552 234555555555555443211110
Q ss_pred ccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCccc-ccCcccccCCCCC
Q 003307 350 QNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN-GFLLPSFFTSTKL 428 (832)
Q Consensus 350 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 428 (832)
.++|+.|+|++|.|++.+|. +..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.+. +.+|..+..++.|
T Consensus 190 ---l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 190 ---FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp ---CTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred ---CCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 11466666666666654443 6667777777777777774 5666777777777777777776 5555556666666
Q ss_pred CeEecc
Q 003307 429 TDLNLS 434 (832)
Q Consensus 429 ~~L~Ls 434 (832)
+.|+++
T Consensus 265 ~~l~~~ 270 (487)
T 3oja_A 265 QTVAKQ 270 (487)
T ss_dssp HHHHHH
T ss_pred cEEecc
Confidence 655554
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-25 Score=252.08 Aligned_cols=215 Identities=23% Similarity=0.195 Sum_probs=113.3
Q ss_pred CCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEe
Q 003307 238 DNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNL 316 (832)
Q Consensus 238 ~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L 316 (832)
++|+.|+|++|.+++..| .+..+++|++|+|++|.+++..| + ..+++|++|+|++|.+++..+. ++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNNNYVQELLVG---PSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C--TTCTTCCEEECCSSEEEEEEEC---TTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c--ccCCCCCEEEecCCcCCCCCCC---CCcCEEEC
Confidence 345555555555554443 44455555555555555543333 2 2344444444444444432211 34444444
Q ss_pred cCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccc
Q 003307 317 SSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA 396 (832)
Q Consensus 317 ~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 396 (832)
++|.+++..+..+. +|+.|+|++|.+++..|..+..+++|++|+|++|.+++.+|.
T Consensus 107 ~~N~l~~~~~~~l~------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 107 ANNNISRVSCSRGQ------------------------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp CSSCCCCEEECCCS------------------------SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred cCCcCCCCCccccC------------------------CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 44444443333333 455566666666655555566666666666666666655555
Q ss_pred ccC-CCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccC
Q 003307 397 VLG-TYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRL 475 (832)
Q Consensus 397 ~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 475 (832)
.+. .+++|+.|+|++|.|++..+ +..+++|+.|+|++|++++..|. +.... +|+.|+|++|.|++ +
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~---------~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAA---------GVTWISLRNNKLVL-I 229 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGT---------TCSEEECTTSCCCE-E
T ss_pred HHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCC---------CccEEEecCCcCcc-c
Confidence 554 45666666666666665422 22356666666666666653332 22222 26666666666664 4
Q ss_pred ChhhhcCCCCCEEeCcCCcCc
Q 003307 476 LPGISKFHNLVYLNLSNNKFE 496 (832)
Q Consensus 476 p~~l~~l~~L~~L~Ls~N~l~ 496 (832)
|..+..+++|+.|++++|++.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBC
T ss_pred chhhccCCCCCEEEcCCCCCc
Confidence 555666667777777777666
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.7e-24 Score=227.06 Aligned_cols=205 Identities=20% Similarity=0.203 Sum_probs=142.8
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
++|++|+|++|.+++..+ .|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468888888888888777 7888888888888888888777778888888888888888888777788888888888888
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccc-cCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcC----EE
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGS-LDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLE----VF 243 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~----~L 243 (832)
++|++++..+..+..+++|++|++++|.+++. +|..++ .+++|++|++++|++++..+.. +..+.+|+ .|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~---~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~l~l~L 182 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSL 182 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG---GCTTCCEEECCSSCCCEECGGG--GHHHHTCTTCCEEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhc---cCCCCCEEECCCCCCCcCCHHH--hhhhhhccccceee
Confidence 88888877776788888888888888888742 344333 3467777777777776543332 44444444 66
Q ss_pred EccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCC
Q 003307 244 DASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG 301 (832)
Q Consensus 244 ~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 301 (832)
++++|.+++..+......+|+.|++++|++++ +|...+ ..+++|+.|++++|.+++
T Consensus 183 ~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~-~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIF-DRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp ECCSSCCCEECTTSSCSCCEEEEECCSSCCSC-CCTTTT-TTCCSCCEEECCSSCBCC
T ss_pred ecCCCcccccCccccCCCcccEEECCCCceee-cCHhHh-cccccccEEEccCCcccc
Confidence 77777776655533334466677777776663 333322 344555555555555543
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=224.32 Aligned_cols=206 Identities=17% Similarity=0.123 Sum_probs=119.2
Q ss_pred CCCEEECCCCCCCccCcc---cccCCCCCCEEEcccccccccCCCCC--CCCCCCCEeeCcCCCCCCccc----hhhhcC
Q 003307 114 SLEFLDLSHNLFHGLIPS---GIVSLKNLMLLNISSNSFEGTFPSGF--GGLGKLKYLDLRANRFGGDIM----HLLSQL 184 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~~----~~l~~l 184 (832)
.++.|.+.++.++...-. .+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666665422110 11234557777777777776666666 667777777777777765433 334467
Q ss_pred CCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeec--cCCCCCCCCCCCcCEEEccCCcccccCC----Ccc
Q 003307 185 GSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGE--LFPHDGMPYFDNLEVFDASNNHLVGAIP----SFN 258 (832)
Q Consensus 185 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~ 258 (832)
++|++|+|++|.+++..+..++ .+++|++|+|++|++.+. ++....+..+++|++|++++|+++...+ .+.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVR---AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCC---CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhc---cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 7777777777777654444333 346667777777766542 2222224566777777777777753222 135
Q ss_pred ccccccEEEccccCCCCCCChhhhhh-CCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecc
Q 003307 259 FVFSLRILRLGSNQLSGSLPVALLQE-SSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG 323 (832)
Q Consensus 259 ~l~~L~~L~L~~N~l~~~~p~~~~~~-~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~ 323 (832)
.+++|++|+|++|++++..|..+... .+++|++|++++|+++.. |.....+|++|+|++|++++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLPAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCCSCCSCEECCSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhcCCCCEEECCCCcCCC
Confidence 56777777777777776656544211 114666666666666633 22222456666666666654
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=3.7e-26 Score=267.31 Aligned_cols=421 Identities=16% Similarity=0.117 Sum_probs=226.9
Q ss_pred CCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccC---C-C------------CCCCCCCCEEE
Q 003307 56 NWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNI---T-D------------IGSIQSLEFLD 119 (832)
Q Consensus 56 ~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~-~------------~~~l~~L~~L~ 119 (832)
.|.++.. ..+..+++.+.. +..+...+..+++|+.|+|+++...... | . ...+++|++|+
T Consensus 36 ~W~~~~~--~~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~ 111 (594)
T 2p1m_B 36 SWYEIER--WCRRKVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIR 111 (594)
T ss_dssp HHHHHHH--HHCCEEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHhhh--hhceEEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEE
Confidence 6777732 123455665543 2222345677889999999987633211 1 1 13567888888
Q ss_pred CCCCCCCccCccccc-CCCCCCEEEcccc-ccccc-CCCCCCCCCCCCEeeCcCCCCCCccchhhh----cCCCCCEEEC
Q 003307 120 LSHNLFHGLIPSGIV-SLKNLMLLNISSN-SFEGT-FPSGFGGLGKLKYLDLRANRFGGDIMHLLS----QLGSVVHVDL 192 (832)
Q Consensus 120 Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~----~l~~L~~L~L 192 (832)
|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|++
T Consensus 112 L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l 191 (594)
T 2p1m_B 112 LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191 (594)
T ss_dssp EESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEEC
T ss_pred eeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEe
Confidence 888888776666665 5788888888887 44432 333344677888888888877665554443 5557777777
Q ss_pred ccCc--CccccCCCCCC-CCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCC-------cccccCCCcccccc
Q 003307 193 SNNQ--FSGSLDLGLGD-SSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN-------HLVGAIPSFNFVFS 262 (832)
Q Consensus 193 s~N~--l~~~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~l~~ 262 (832)
++|. ++.. .+.. ...+++|+.|++++|...+.++.. +..+++|+.|+++.+ .+.+..+.+..+++
T Consensus 192 ~~~~~~~~~~---~l~~l~~~~~~L~~L~L~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 192 SCLASEVSFS---ALERLVTRCPNLKSLKLNRAVPLEKLATL--LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266 (594)
T ss_dssp TTCCSCCCHH---HHHHHHHHCTTCCEEECCTTSCHHHHHHH--HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred cccCCcCCHH---HHHHHHHhCCCCcEEecCCCCcHHHHHHH--HhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence 7775 2210 0100 012366777777766222222222 445666777764433 33333334555666
Q ss_pred ccEE-EccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccC---ccCCCCCCEEEecCCeecccCCCCCCCCCEEecC
Q 003307 263 LRIL-RLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVG---SITSATLKKVNLSSNKLSGSLPARVGHCTIVDLS 338 (832)
Q Consensus 263 L~~L-~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~---~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~ 338 (832)
|+.| .+.+... +.++..+ ..+++|++|++++|.+++... ....++|++|++++| ++.
T Consensus 267 L~~Ls~~~~~~~-~~l~~~~--~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~--------------- 327 (594)
T 2p1m_B 267 LRCLSGFWDAVP-AYLPAVY--SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED--------------- 327 (594)
T ss_dssp CCEEECCBTCCG-GGGGGGH--HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH---------------
T ss_pred cccccCCcccch-hhHHHHH--HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH---------------
Confidence 6666 2322211 1222222 234556666666666443211 112345555555544 221
Q ss_pred CCCCcCcchhhccccCcccEEEc---------CCCcCCCCCcccc-cCCCCCCEEEccCCcCCCCcccccC-CCCCCCEE
Q 003307 339 NNRLSGDLSRMQNWGNYVEDIHL---------SSNFLTGMVPNQT-SQFLRLTSFKVSNNSLEGDLPAVLG-TYPELKVI 407 (832)
Q Consensus 339 ~N~l~~~~~~~~~~~~~L~~L~L---------s~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L 407 (832)
..+..+...+++|++|++ +.+.+++.....+ ..+++|+.|.++.|.+++.....+. .+++|+.|
T Consensus 328 -----~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 328 -----AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp -----HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred -----HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 111222222345666666 2234433222222 2366777777777777655444443 46777777
Q ss_pred Ecc--C----CcccccC-----cccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCC
Q 003307 408 DLS--L----NHLNGFL-----LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL 476 (832)
Q Consensus 408 ~Ls--~----N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p 476 (832)
+++ + |.+++.. +..+..+++|+.|+|++ .+++..+..+... ..+|+.|+|++|.+++..+
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~--------~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY--------AKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH--------CTTCCEEEEESCCSSHHHH
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh--------chhccEeeccCCCCcHHHH
Confidence 777 3 4454221 12245567777777766 4443322222210 1137777777777766555
Q ss_pred hhh-hcCCCCCEEeCcCCcCcccCCCCcc---CCCcEEEcCCCccc
Q 003307 477 PGI-SKFHNLVYLNLSNNKFEGSIPDGLP---NGLKEFNVSFNNLS 518 (832)
Q Consensus 477 ~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~---~~L~~l~ls~N~l~ 518 (832)
..+ ..+++|+.|+|++|.+++..+..+. ++|+.|++++|+++
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 444 5677777777777777543322111 56777777777663
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=3.2e-26 Score=267.90 Aligned_cols=401 Identities=15% Similarity=0.101 Sum_probs=243.0
Q ss_pred CcEEEEEeCCCCCccccC--------------cccccCCCCCCEEEcCCCCCcccCC-CCC-CCCCCCEEECCCC-CCCc
Q 003307 65 GYVTSIMLNDMGLVGNFS--------------FPTIIGLKMLCNVSVSNNQLMGNIT-DIG-SIQSLEFLDLSHN-LFHG 127 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~-~l~~L~~L~Ls~N-~l~~ 127 (832)
.+++.++++++.....+. ......+++|++|+|++|.+++..+ .+. .+++|++|+|++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 457888888865332221 0113468899999999999887665 554 6899999999999 5654
Q ss_pred c-CcccccCCCCCCEEEcccccccccCCCCC----CCCCCCCEeeCcCCC--CCCc-cchhhhcCCCCCEEECccCc-Cc
Q 003307 128 L-IPSGIVSLKNLMLLNISSNSFEGTFPSGF----GGLGKLKYLDLRANR--FGGD-IMHLLSQLGSVVHVDLSNNQ-FS 198 (832)
Q Consensus 128 ~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~L~~N~--l~~~-~~~~l~~l~~L~~L~Ls~N~-l~ 198 (832)
. ++..+.++++|++|+|++|.+++..+..+ ..+++|++|+|++|. ++.. ....+..+++|++|+|++|. ++
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 3 44455589999999999999887554444 477899999999997 3211 22334567999999999983 43
Q ss_pred cccCCCCCCCCCCCCccEEECCCCC-------CeeccCCCCCCCCCCCcCEE-EccCCcccccCC-CccccccccEEEcc
Q 003307 199 GSLDLGLGDSSFISSIQYLNISENS-------LVGELFPHDGMPYFDNLEVF-DASNNHLVGAIP-SFNFVFSLRILRLG 269 (832)
Q Consensus 199 ~~~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~-~~~~l~~L~~L~L~ 269 (832)
+ ++..+. .+++|+.|+++.+. +.+ ++.. +.++++|+.| .+...... .++ .+..+++|+.|+|+
T Consensus 226 ~-l~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~-l~~~--l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 226 K-LATLLQ---RAPQLEELGTGGYTAEVRPDVYSG-LSVA--LSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp H-HHHHHH---HCTTCSEEECSBCCCCCCHHHHHH-HHHH--HHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECT
T ss_pred H-HHHHHh---cCCcceEcccccccCccchhhHHH-HHHH--HhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEcc
Confidence 3 443333 34789999976653 222 2222 6678899988 45444332 333 44578999999999
Q ss_pred ccCCCCCCChhhhhhCCCCCCEEECCCCCCCC-ccCc--cCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcc
Q 003307 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGS--ITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDL 346 (832)
Q Consensus 270 ~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~-~~~~--~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~ 346 (832)
+|.+++.....+. ..+++|+.|++++| +.. .++. ...++|++|++.++.-.| ....+.+++..
T Consensus 298 ~~~l~~~~l~~~~-~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g------------~~~~~~l~~~~ 363 (594)
T 2p1m_B 298 YATVQSYDLVKLL-CQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV------------MEPNVALTEQG 363 (594)
T ss_dssp TCCCCHHHHHHHH-TTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC------------SSCSSCCCHHH
T ss_pred CCCCCHHHHHHHH-hcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc------------cccCCCCCHHH
Confidence 9997754333332 46789999999988 432 1111 124678899885432100 01112222211
Q ss_pred -hhhccccCcccEEEcCCCcCCCCCccccc-CCCCCCEEEcc--C----CcCCCC-----cccccCCCCCCCEEEccCCc
Q 003307 347 -SRMQNWGNYVEDIHLSSNFLTGMVPNQTS-QFLRLTSFKVS--N----NSLEGD-----LPAVLGTYPELKVIDLSLNH 413 (832)
Q Consensus 347 -~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~Ls~N~ 413 (832)
..+...+++|+.|.++.|.+++.....+. .+++|+.|+++ + |.+++. ++..+..+++|+.|++++ .
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 11112233566666666666554444343 35666666666 3 444421 112244566677777755 5
Q ss_pred ccccCcccccC-CCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCCh-hhhcCCCCCEEeCc
Q 003307 414 LNGFLLPSFFT-STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLP-GISKFHNLVYLNLS 491 (832)
Q Consensus 414 l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls 491 (832)
+++..+..+.. +++|+.|+|++|.+++..+..+... ..+|++|+|++|.+++..+. .+..+++|+.|+++
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~--------~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG--------CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHH--------CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhc--------CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 55444444443 6667777777776654322222110 11367777777776544333 23446677777777
Q ss_pred CCcCc
Q 003307 492 NNKFE 496 (832)
Q Consensus 492 ~N~l~ 496 (832)
+|+++
T Consensus 515 ~~~~~ 519 (594)
T 2p1m_B 515 SCSVS 519 (594)
T ss_dssp SSCCB
T ss_pred CCCCC
Confidence 77664
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.2e-22 Score=212.74 Aligned_cols=210 Identities=19% Similarity=0.105 Sum_probs=184.3
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
..++.|+++++++.+.. +..+.++++|++|+|++|.+++..+ .|..+++|++|+|++|.+++..+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccC-HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 45899999999988654 4578999999999999999998888 899999999999999999999889999999999999
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCcc-EEECCC
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQ-YLNISE 221 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~-~L~L~~ 221 (832)
+++|.+++..+..|.++++|++|+|++|++++. +|..+..+++|++|+|++|++++..+..+..+..++.|. .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999988887899999999999999999875 589999999999999999999977666666555555555 899999
Q ss_pred CCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCC
Q 003307 222 NSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLP 278 (832)
Q Consensus 222 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p 278 (832)
|.+++..+.. + ...+|+.|++++|++++..+ .+..+++|+.|+|++|.+++..|
T Consensus 187 n~l~~~~~~~--~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGA--F-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTS--S-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccc--c-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9998654433 3 34589999999999997776 57889999999999999997765
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7.3e-23 Score=213.82 Aligned_cols=210 Identities=20% Similarity=0.233 Sum_probs=130.2
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
....+++|+.|++++|.+.. ++.+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+++..+..|.++++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34556777777777777663 34577777788888888777763 3677777788888888877776666677777788
Q ss_pred EeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 165 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
+|+|++|++++..+..|..+++|++|+|++|.+++..+..+ ..+++|+.|++++|++++..+.. +..+++|+.|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~ 187 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF---DKLTNLTELDLSYNQLQSLPEGV--FDKLTQLKDLR 187 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEE
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh---ccCccCCEEECCCCCcCccCHHH--hcCCccCCEEE
Confidence 88887777777777777777777777777777764333222 22345555555555554322222 44445555555
Q ss_pred ccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecc
Q 003307 245 ASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG 323 (832)
Q Consensus 245 Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~ 323 (832)
+++|++++..+ .+..+++|+.|++++|.+. +. .+.|+.++++.|+++|
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------------------------~~-----~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------------------------CT-----CPGIRYLSEWINKHSG 236 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------------------------CC-----TTTTHHHHHHHHHTGG
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------------------------cc-----CcHHHHHHHHHHhCCC
Confidence 55555544433 2344444444444444443 22 1245566677777777
Q ss_pred cCCCCCCCCC
Q 003307 324 SLPARVGHCT 333 (832)
Q Consensus 324 ~~p~~l~~l~ 333 (832)
.+|..++.+.
T Consensus 237 ~ip~~~~~~~ 246 (272)
T 3rfs_A 237 VVRNSAGSVA 246 (272)
T ss_dssp GBBCTTSCBC
T ss_pred cccCcccccC
Confidence 7777766554
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.9e-23 Score=216.83 Aligned_cols=162 Identities=22% Similarity=0.245 Sum_probs=135.6
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|++|+|++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+.|+|+
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 68888888888888877778888889999999999987777778888999999999999988877778888999999999
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCC
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSF 514 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~ 514 (832)
+|++++..+..+.... +|++|+|++|++++..+..+..+++|+.|+|++|++.|.+| .++.++++.
T Consensus 166 ~n~l~~~~~~~~~~l~---------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-----~l~~l~~~~ 231 (272)
T 3rfs_A 166 YNQLQSLPEGVFDKLT---------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLSEWI 231 (272)
T ss_dssp SSCCCCCCTTTTTTCT---------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-----TTHHHHHHH
T ss_pred CCCcCccCHHHhcCCc---------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-----HHHHHHHHH
Confidence 9988865553333322 48999999999998888888999999999999999998765 478899999
Q ss_pred CccccccCccCCCCCC
Q 003307 515 NNLSGVVPENLRNFPD 530 (832)
Q Consensus 515 N~l~g~~p~~~~~~~~ 530 (832)
|.++|.+|..+...+.
T Consensus 232 n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 232 NKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHTGGGBBCTTSCBCG
T ss_pred HhCCCcccCcccccCC
Confidence 9999999988766543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=6e-22 Score=206.65 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=164.1
Q ss_pred CCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCc
Q 003307 90 KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 169 (832)
..++.++++++.++..+..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.++...+..|.++++|++|+|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 357899999999996544554 689999999999998888899999999999999999997777778999999999999
Q ss_pred CCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCc
Q 003307 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH 249 (832)
Q Consensus 170 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 249 (832)
+|++++..+..|..+++|++|+|++|++++..+..+ ..+++|++|+|++|.+++..+.. +..+++|+.|++++|.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF---DSLTKLTYLSLGYNELQSLPKGV--FDKLTSLKELRLYNNQ 168 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh---CcCcCCCEEECCCCcCCccCHhH--ccCCcccceeEecCCc
Confidence 999998888889999999999999999986554433 45688899999999887544333 7788888888888888
Q ss_pred ccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCC
Q 003307 250 LVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG 301 (832)
Q Consensus 250 l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 301 (832)
+++..+ .+..+++|++|+|++|++++ +|...+ ..+++|+.|++++|.+..
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~-~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAF-DSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTT-TTCTTCCEEECCSSCBCC
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCc-CCHHHh-ccccCCCEEEecCCCeeC
Confidence 887666 57788888888888888874 443322 456667777777776653
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=9.5e-22 Score=207.01 Aligned_cols=203 Identities=22% Similarity=0.186 Sum_probs=135.0
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
.+.++++++.+++++|.++..++.+. +++++|+|++|.|++..+..|.++++|++|+|++|.|++..+. ..+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 35566677777777777765544443 5777777777777777777777777777777777777754332 6677777
Q ss_pred EeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 165 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
+|+|++|+++ .+|..+..+++|++|+|++|++++..+..+ ..+++|++|+|++|++++..+.. |..+++|+.|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~ 154 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLS 154 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT---TTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEE
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH---cCCCCCCEEECCCCCCCccChhh--cccccCCCEEE
Confidence 7777777776 455566777777777777777774433333 34467777777777776433322 66677777777
Q ss_pred ccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCC
Q 003307 245 ASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300 (832)
Q Consensus 245 Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~ 300 (832)
+++|++++..+ .+..+++|+.|+|++|+++ .+|..++ ....|+.|+|++|.+.
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~--~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF--GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT--TTCCCSEEECCSCCBC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc--ccccCCeEEeCCCCcc
Confidence 77777775555 4566777777777777777 5666553 3345666666666554
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3.6e-22 Score=204.33 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=146.6
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCC-CCccCcccccCCCCCCEEEccc-ccccccCCCCCCCCCCCCEe
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNL-FHGLIPSGIVSLKNLMLLNISS-NSFEGTFPSGFGGLGKLKYL 166 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L 166 (832)
.+|+.|+|++|++++..+ .|..+++|++|+|++|. ++.+.+..|.++++|++|+|++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999998887 78899999999999996 8888777889999999999998 89988777888899999999
Q ss_pred eCcCCCCCCccchhhhcCCCCC---EEECccC-cCccccCCCCCCCCCCCCcc-EEECCCCCCeeccCCCCCCCCCCCcC
Q 003307 167 DLRANRFGGDIMHLLSQLGSVV---HVDLSNN-QFSGSLDLGLGDSSFISSIQ-YLNISENSLVGELFPHDGMPYFDNLE 241 (832)
Q Consensus 167 ~L~~N~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~~~l~~L~ 241 (832)
+|++|++++ +|. |..+++|+ +|++++| .+++..+..+ ..+++|+ .|++++|.++ .++.. .+.. ++|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~---~~l~~L~~~L~l~~n~l~-~i~~~-~~~~-~~L~ 182 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF---QGLCNETLTLKLYNNGFT-SVQGY-AFNG-TKLD 182 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT---TTTBSSEEEEECCSCCCC-EECTT-TTTT-CEEE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc---cchhcceeEEEcCCCCCc-ccCHh-hcCC-CCCC
Confidence 999999886 444 77788887 8888888 7775443333 3457778 8888888876 44433 2333 6777
Q ss_pred EEEccCCc-ccccCC-Ccccc-ccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCC
Q 003307 242 VFDASNNH-LVGAIP-SFNFV-FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLN 297 (832)
Q Consensus 242 ~L~Ls~N~-l~~~~~-~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N 297 (832)
.|++++|+ +++..+ .|..+ ++|+.|++++|+++ .+|.. .+.+|+.|+++++
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT----TCTTCSEEECTTC
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh----HhccCceeeccCc
Confidence 88888874 775555 56667 77777777777776 34433 2445666666554
No 82
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.4e-22 Score=199.86 Aligned_cols=180 Identities=20% Similarity=0.172 Sum_probs=132.0
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
++.|.|.|.+|.|+...++. + +. .-.++|++|+|++|++++..+ .|..+++|++|+|++|+|++.
T Consensus 2 p~~C~C~~~~v~c~~~~l~~-----------~-p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 2 PSRCSCSGTTVECYSQGRTS-----------V-PT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp CTTCEEETTEEECCSSCCSS-----------C-CS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred cCCCEECCCEEEecCCCccC-----------C-CC--CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence 45788899999996433222 1 11 123578999999999987776 678899999999999999887
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCC
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 208 (832)
.+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+.. +
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~ 144 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV---F 144 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT---T
T ss_pred ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH---h
Confidence 7777888999999999999998777777888999999999999998887777888888888888888887543322 2
Q ss_pred CCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC
Q 003307 209 SFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP 255 (832)
Q Consensus 209 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 255 (832)
..+++|+.|++++|.+. ..+++|+.|+++.|+++|.+|
T Consensus 145 ~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TTCTTCCEEECCSCCBC---------CCTTTTHHHHHHHHHCTTTBB
T ss_pred ccCCCccEEEecCCCee---------cCCCCHHHHHHHHHhCCceee
Confidence 33456666666666553 223445555555555555555
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.9e-24 Score=229.21 Aligned_cols=265 Identities=15% Similarity=0.169 Sum_probs=207.2
Q ss_pred CCCCccccCCCcEEEEEeCCCCCccccCcccccCC--CCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCcc-Ccc
Q 003307 55 RNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGL--KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGL-IPS 131 (832)
Q Consensus 55 ~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~ 131 (832)
..|.++.|++..++.++++++.+. +..+..+ ++++.|++++|.+.+..+.+..+++|++|+|++|.+++. +|.
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred HHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 369999888777899999988766 3456666 899999999999999888778899999999999999876 788
Q ss_pred cccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC-CCCCc-cchhhhcCCCCCEEECccC-cCccc-cCCCCCC
Q 003307 132 GIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN-RFGGD-IMHLLSQLGSVVHVDLSNN-QFSGS-LDLGLGD 207 (832)
Q Consensus 132 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~ 207 (832)
.+..+++|++|+|++|.+++..+..|+.+++|++|+|++| .+++. ++..+..+++|++|++++| .+++. ++..+.
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~- 191 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA- 191 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-
Confidence 8999999999999999999888889999999999999999 68763 6777899999999999999 88853 333332
Q ss_pred CCCCC-CccEEECCCC--CCe-eccCCCCCCCCCCCcCEEEccCCc-ccccCC-CccccccccEEEccccC-CCCCCChh
Q 003307 208 SSFIS-SIQYLNISEN--SLV-GELFPHDGMPYFDNLEVFDASNNH-LVGAIP-SFNFVFSLRILRLGSNQ-LSGSLPVA 280 (832)
Q Consensus 208 ~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~L~~N~-l~~~~p~~ 280 (832)
.++ +|++|++++| .++ +.++.. +..+++|+.|++++|. +++..+ .+..+++|+.|++++|. +.......
T Consensus 192 --~l~~~L~~L~l~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 192 --HVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp --HSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred --hcccCCCEEEeCCCcccCCHHHHHHH--HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 347 9999999999 454 233333 5678899999999999 665444 78888999999999995 32111113
Q ss_pred hhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCC
Q 003307 281 LLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGH 331 (832)
Q Consensus 281 ~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~ 331 (832)
+ ..+++|+.|++++| ++...-......+..|++++|++++..|..+++
T Consensus 268 l--~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 268 L--GEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp G--GGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred H--hcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 3 45788999999988 432111111134777788888888887776654
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.2e-23 Score=229.66 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=49.7
Q ss_pred EEECCCCCCCccCcccccCCCCCCEEEcccccccccCC----CCCCCCC-CCCEeeCcCCCCCCccchhhhcC-----CC
Q 003307 117 FLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFP----SGFGGLG-KLKYLDLRANRFGGDIMHLLSQL-----GS 186 (832)
Q Consensus 117 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~l-----~~ 186 (832)
+++|++|.+++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35566666666666655555556666666666665544 4555666 66666666666665555555543 55
Q ss_pred CCEEECccCcCc
Q 003307 187 VVHVDLSNNQFS 198 (832)
Q Consensus 187 L~~L~Ls~N~l~ 198 (832)
|++|+|++|.++
T Consensus 82 L~~L~Ls~n~l~ 93 (362)
T 3goz_A 82 VTSLNLSGNFLS 93 (362)
T ss_dssp CCEEECCSSCGG
T ss_pred ccEEECcCCcCC
Confidence 666666666555
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.5e-21 Score=201.26 Aligned_cols=187 Identities=19% Similarity=0.188 Sum_probs=118.3
Q ss_pred CCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCccccc
Q 003307 56 NWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIV 134 (832)
Q Consensus 56 ~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 134 (832)
.|.|..|.. ..+.++++++++.. + +..+. +.++.|+|++|.+.+..+ .|..+++|++|+|++|.|++..+..|.
T Consensus 6 ~~~gC~C~~-~~~~l~~~~~~l~~-~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 6 TVTGCTCNE-GKKEVDCQGKSLDS-V-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp HHHSSEEEG-GGTEEECTTCCCSS-C-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCceEcCC-CCeEEecCCCCccc-c-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 788888842 23356777776653 2 12222 467777777777776666 677777777777777777776666677
Q ss_pred CCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCc
Q 003307 135 SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSI 214 (832)
Q Consensus 135 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 214 (832)
.+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------- 150 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA---------- 150 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH----------
Confidence 7777777777777777666666677777777777777777666666666666666666666666332222
Q ss_pred cEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCC
Q 003307 215 QYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGS 276 (832)
Q Consensus 215 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~ 276 (832)
+..+++|+.|++++|++++..+ .+..+++|+.|+|++|.+++.
T Consensus 151 -------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 -------------------FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -------------------cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 4445555555555555554444 455556666666666666544
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=5.2e-21 Score=201.38 Aligned_cols=132 Identities=26% Similarity=0.180 Sum_probs=73.8
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|+.|+|++|.++ .+|..+..+++|++|++++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|+
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 3455555555554 344455556666666666666665555556666666666666666666555555566666666666
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcc
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEG 497 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 497 (832)
+|++++..+..+... .+|+.|+|++|+|+ .+|..+..+.+|+.|+|++|++.+
T Consensus 157 ~N~l~~l~~~~~~~l---------~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 157 NNNLTELPAGLLNGL---------ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TSCCSCCCTTTTTTC---------TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCcCCccCHHHhcCc---------CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 666553222111111 12555555555555 445555566667777777776654
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=6.6e-22 Score=210.84 Aligned_cols=229 Identities=17% Similarity=0.133 Sum_probs=176.3
Q ss_pred CcEEEEEeCCCCCcccc--CcccccCCCCCCEEEcCCCCCcccCC-CC--CCCCCCCEEECCCCCCCccCc----ccccC
Q 003307 65 GYVTSIMLNDMGLVGNF--SFPTIIGLKMLCNVSVSNNQLMGNIT-DI--GSIQSLEFLDLSHNLFHGLIP----SGIVS 135 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~ 135 (832)
..++.+.+.+..+.... ....+..+++|++|+|++|.+.+..| .+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35778888887765321 01123345779999999999999888 66 889999999999999997655 45567
Q ss_pred CCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc--c--chhhhcCCCCCEEECccCcCccccCCCCCCCCCC
Q 003307 136 LKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD--I--MHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFI 211 (832)
Q Consensus 136 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 211 (832)
+++|++|+|++|.+++..|..|.++++|++|+|++|++.+. . +..+..+++|++|+|++|+++...+....-+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 99999999999999988889999999999999999998753 2 2234789999999999999973211100012345
Q ss_pred CCccEEECCCCCCeeccCCCCCCCCC---CCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCC
Q 003307 212 SSIQYLNISENSLVGELFPHDGMPYF---DNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMM 288 (832)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 288 (832)
++|++|+|++|++++..|+. +..+ ++|+.|++++|+++.....+. ++|++|+|++|++++. |. + ..+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~--~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~--~~l~~ 295 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPS--APRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-P--DELPE 295 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSC--CSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-T--TSCCC
T ss_pred CCCCEEECCCCCCCccchhh--HHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-h--hhCCC
Confidence 89999999999998876655 5544 799999999999994433443 7999999999999853 43 2 46789
Q ss_pred CCEEECCCCCCCC
Q 003307 289 LSELDLSLNQLEG 301 (832)
Q Consensus 289 L~~L~L~~N~l~~ 301 (832)
|+.|++++|.++.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999874
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=9e-22 Score=201.41 Aligned_cols=198 Identities=16% Similarity=0.122 Sum_probs=147.4
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEccccc-ccccCCCCCCCCCCCCEeeCcC-CCCCCccchhhhcCCCCCEE
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS-FEGTFPSGFGGLGKLKYLDLRA-NRFGGDIMHLLSQLGSVVHV 190 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~l~~L~~L 190 (832)
++|++|+|++|+|+++.+..|.++++|++|++++|. ++.+.+..|.++++|++|+|++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999999888899999999999999997 9988788999999999999999 99998888899999999999
Q ss_pred ECccCcCccccCCCCCCCCCCCCccEEECCCC-CCeeccCCCCCCCCCCCcC-EEEccCCcccccCC-CccccccccEEE
Q 003307 191 DLSNNQFSGSLDLGLGDSSFISSIQYLNISEN-SLVGELFPHDGMPYFDNLE-VFDASNNHLVGAIP-SFNFVFSLRILR 267 (832)
Q Consensus 191 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~-~~~~l~~L~~L~ 267 (832)
++++|.+++ +|. +..+..++.|++|++++| .+++..+.. |..+++|+ .|++++|.++...+ .+.. ++|+.|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~--~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA--FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT--TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccc--ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 999999986 454 444433333448888888 777544433 77788888 88888888874444 3333 7788888
Q ss_pred ccccC-CCCCCChhhhhhCC-CCCCEEECCCCCCCCccCccCCCCCCEEEecC
Q 003307 268 LGSNQ-LSGSLPVALLQESS-MMLSELDLSLNQLEGPVGSITSATLKKVNLSS 318 (832)
Q Consensus 268 L~~N~-l~~~~p~~~~~~~~-~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~ 318 (832)
+++|+ ++ .+|...+ ..+ ++|+.|++++|++++..+. ...+|+.|++++
T Consensus 186 L~~n~~l~-~i~~~~~-~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~ 235 (239)
T 2xwt_C 186 LNKNKYLT-VIDKDAF-GGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARN 235 (239)
T ss_dssp CTTCTTCC-EECTTTT-TTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTT
T ss_pred cCCCCCcc-cCCHHHh-hccccCCcEEECCCCccccCChh-HhccCceeeccC
Confidence 88884 76 3433322 334 5666666666666543222 333444444443
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.1e-20 Score=194.71 Aligned_cols=180 Identities=21% Similarity=0.207 Sum_probs=142.9
Q ss_pred CCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCc
Q 003307 90 KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 169 (832)
...+.++++++.++..++.+. ++|++|+|++|.+++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356778888888876554554 578888888888888877788888888888888888887777778888888888888
Q ss_pred CCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCc
Q 003307 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH 249 (832)
Q Consensus 170 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 249 (832)
+|++++..+..|..+++|++|+|++|++++..+ . .+..+++|+.|+|++|+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------------~--~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS---------------------------G--VFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------------------T--TTTTCTTCCEEECCSSC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcCh---------------------------h--HhccCCcccEEECcCCc
Confidence 888887777777777777777777777763211 1 15667888999999999
Q ss_pred ccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCc
Q 003307 250 LVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGP 302 (832)
Q Consensus 250 l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~ 302 (832)
+++..+ .+..+++|++|+|++|++++..+..+ ..+++|+.|++++|.+++.
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF--DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCceeCC
Confidence 987777 78999999999999999996655555 5688999999999999875
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.2e-22 Score=221.64 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=86.3
Q ss_pred EEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCc----ccccCCC-CCCEEEcccccccccCCCCCCCC-----CC
Q 003307 94 NVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIP----SGIVSLK-NLMLLNISSNSFEGTFPSGFGGL-----GK 162 (832)
Q Consensus 94 ~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 162 (832)
.++|+.|.+++.+| .+...++|++|||++|.|++..+ ..|..++ +|++|+|++|.|++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 36788888888888 44555569999999999998877 7788888 89999999999998777777665 89
Q ss_pred CCEeeCcCCCCCCccchhhhc----C-CCCCEEECccCcCccc
Q 003307 163 LKYLDLRANRFGGDIMHLLSQ----L-GSVVHVDLSNNQFSGS 200 (832)
Q Consensus 163 L~~L~L~~N~l~~~~~~~l~~----l-~~L~~L~Ls~N~l~~~ 200 (832)
|++|+|++|++++..+..+.. + ++|++|+|++|.+++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 999999999998777765444 3 7888888888888743
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.7e-20 Score=199.52 Aligned_cols=194 Identities=21% Similarity=0.274 Sum_probs=121.2
Q ss_pred ccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCE
Q 003307 86 IIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKY 165 (832)
Q Consensus 86 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 165 (832)
...+++|+.|++++|.+... +.+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++. ..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 44567788888888877653 467778888888888888876544 77888888888888888753 35777888888
Q ss_pred eeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEc
Q 003307 166 LDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDA 245 (832)
Q Consensus 166 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 245 (832)
|+|++|++++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 112 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l 180 (308)
T 1h6u_A 112 LDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKA 180 (308)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred EECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEEC
Confidence 8888888776432 7777777777777777764322 3334555555555555543211 344445555555
Q ss_pred cCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeec
Q 003307 246 SNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLS 322 (832)
Q Consensus 246 s~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~ 322 (832)
++|.+++..+ +..+ ++|++|++++|++++..+....++|+.|++++|+++
T Consensus 181 ~~n~l~~~~~-l~~l--------------------------~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 181 DDNKISDISP-LASL--------------------------PNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CSSCCCCCGG-GGGC--------------------------TTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred CCCccCcChh-hcCC--------------------------CCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 5555443222 3444 445555555555544443333445666666666665
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=5.2e-23 Score=226.81 Aligned_cols=91 Identities=24% Similarity=0.265 Sum_probs=57.2
Q ss_pred CCCCCCCCCEEECCCCCCCccCc----ccccCCCCCCEEEcccc---cccccCCCCC-------CCCCCCCEeeCcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIP----SGIVSLKNLMLLNISSN---SFEGTFPSGF-------GGLGKLKYLDLRANRF 173 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~N~l 173 (832)
.+..+++|++|+|++|.|++..+ ..|..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 34556666667777666665433 33556666777777664 3333444433 5677777777777777
Q ss_pred CC----ccchhhhcCCCCCEEECccCcCc
Q 003307 174 GG----DIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 174 ~~----~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+. .++..+..+++|++|+|++|.++
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 66 35666677777777777777765
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.6e-22 Score=222.90 Aligned_cols=238 Identities=20% Similarity=0.257 Sum_probs=160.1
Q ss_pred ccccCCCCCCEEEcCCCCCcccC----C-CCCCCCCCCEEECCCC---CCCccCcccc-------cCCCCCCEEEccccc
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNI----T-DIGSIQSLEFLDLSHN---LFHGLIPSGI-------VSLKNLMLLNISSNS 148 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~----~-~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~Ls~N~ 148 (832)
..+..+++|+.|+|++|.+.+.. + .+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 45667888999999999887653 2 4778899999999886 4555666555 688999999999999
Q ss_pred ccc----cCCCCCCCCCCCCEeeCcCCCCCCccchhh----hcC---------CCCCEEECccCcCc-cccCCCCCCCCC
Q 003307 149 FEG----TFPSGFGGLGKLKYLDLRANRFGGDIMHLL----SQL---------GSVVHVDLSNNQFS-GSLDLGLGDSSF 210 (832)
Q Consensus 149 l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l----~~l---------~~L~~L~Ls~N~l~-~~~~~~~~~~~~ 210 (832)
+++ .+|..+..+++|++|+|++|.++...+..+ ..+ ++|++|+|++|+++ +.++.-...+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 887 466778888999999999998865444443 334 88999999998887 233311112233
Q ss_pred CCCccEEECCCCCCeec-----cCCCCCCCCCCCcCEEEccCCccc----ccCC-CccccccccEEEccccCCCCC----
Q 003307 211 ISSIQYLNISENSLVGE-----LFPHDGMPYFDNLEVFDASNNHLV----GAIP-SFNFVFSLRILRLGSNQLSGS---- 276 (832)
Q Consensus 211 l~~L~~L~L~~N~l~~~-----~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~-~~~~l~~L~~L~L~~N~l~~~---- 276 (832)
+++|+.|+|++|.++.. .+.. +..+++|+.|+|++|.++ ..+| .+..+++|+.|+|++|++++.
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~--l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEG--LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTT--GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHH--hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 46788888888887621 2213 667778888888888875 3444 567777888888888887754
Q ss_pred CChhhhhhCCCCCCEEECCCCCCCC----ccCc-c--CCCCCCEEEecCCeecc
Q 003307 277 LPVALLQESSMMLSELDLSLNQLEG----PVGS-I--TSATLKKVNLSSNKLSG 323 (832)
Q Consensus 277 ~p~~~~~~~~~~L~~L~L~~N~l~~----~~~~-~--~~~~L~~L~L~~N~l~~ 323 (832)
++..+....+++|+.|+|++|.+++ .++. . ..++|++|++++|++++
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 2333321235667777777777665 2221 1 13455555555555543
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.5e-20 Score=203.86 Aligned_cols=222 Identities=16% Similarity=0.070 Sum_probs=152.2
Q ss_pred CCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCc
Q 003307 52 GCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIP 130 (832)
Q Consensus 52 ~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p 130 (832)
.|.|+|..|.|+...+++ + |..+ .+++++|+|++|+|+...+ .|.++++|++|+|++|.+.+.+|
T Consensus 6 ~C~C~~~~v~C~~~~Lt~-----------i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 6 ICHCSNRVFLCQESKVTE-----------I-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp SSEEETTEEEEESTTCCS-----------C-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred ccEeeCCEEEecCCCCCc-----------c-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 477777777775333332 2 2233 3578999999999998777 78999999999999999866554
Q ss_pred -ccccCCCCCCE-EEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECcc-CcCccccCCCCCC
Q 003307 131 -SGIVSLKNLML-LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSN-NQFSGSLDLGLGD 207 (832)
Q Consensus 131 -~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~ 207 (832)
..|.++++|++ +.++.|+|+.+.|..|.++++|++|++++|+++...+..+....++..|++.+ |++....+..+..
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 56888888775 66777899988888999999999999999999887777777777888888865 4555332222222
Q ss_pred CCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccC-CcccccCC-CccccccccEEEccccCCCCCCChhhhhhC
Q 003307 208 SSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN-NHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQES 285 (832)
Q Consensus 208 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 285 (832)
+ ...++.|+|++|+|+. +++. .....+|+.|++++ |.++...+ .|..+++|++|+|++|+|+ .+|...
T Consensus 152 ~--~~~l~~L~L~~N~i~~-i~~~--~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---- 221 (350)
T 4ay9_X 152 L--SFESVILWLNKNGIQE-IHNS--AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---- 221 (350)
T ss_dssp S--BSSCEEEECCSSCCCE-ECTT--SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS----
T ss_pred c--chhhhhhccccccccC-CChh--hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh----
Confidence 1 1357778888887764 3333 33456677777765 44443333 5677777777777777777 455432
Q ss_pred CCCCCEEECCCC
Q 003307 286 SMMLSELDLSLN 297 (832)
Q Consensus 286 ~~~L~~L~L~~N 297 (832)
+.+|+.|.+.++
T Consensus 222 ~~~L~~L~~l~~ 233 (350)
T 4ay9_X 222 LENLKKLRARST 233 (350)
T ss_dssp CTTCCEEECTTC
T ss_pred hccchHhhhccC
Confidence 334555555433
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.5e-20 Score=196.97 Aligned_cols=194 Identities=20% Similarity=0.256 Sum_probs=168.1
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEc
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNI 144 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 144 (832)
..++.++++++++.. + +.+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+++. ..+..+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~~-l--~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-I--EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-c--hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 357889999988765 3 468899999999999999998776 99999999999999999975 36999999999999
Q ss_pred ccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCC
Q 003307 145 SSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL 224 (832)
Q Consensus 145 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l 224 (832)
++|.+++. + .+.++++|++|+|++|++++..+ +..+++|++|+|++|.+++..+ +..+++|+.|++++|.+
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKI 185 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCCcc
Confidence 99999974 3 39999999999999999997665 8999999999999999985433 55679999999999999
Q ss_pred eeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCCh
Q 003307 225 VGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPV 279 (832)
Q Consensus 225 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 279 (832)
++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++++ .|.
T Consensus 186 ~~~~~----l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~-~~~ 234 (308)
T 1h6u_A 186 SDISP----LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITN-QPV 234 (308)
T ss_dssp CCCGG----GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEEC-CCE
T ss_pred CcChh----hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeec-CCe
Confidence 86432 778999999999999999766 47889999999999999973 443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.7e-20 Score=213.94 Aligned_cols=207 Identities=20% Similarity=0.281 Sum_probs=126.6
Q ss_pred ccCccccCCCCCCCCC---CCCcc-ccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCC
Q 003307 40 IDSWDTKSLSSDGCPR---NWFGI-TCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSL 115 (832)
Q Consensus 40 l~~w~~~~~~~~~c~~---~w~gv-~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L 115 (832)
+.+|... .++|.. .|.|+ .|...+++.|+|+++++.+ ++ ..+ +++|+.|+|++|.|+. +| ..+++|
T Consensus 33 l~~W~~~---~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp-~~l--~~~L~~L~Ls~N~l~~-ip--~~l~~L 102 (571)
T 3cvr_A 33 WDKWEKQ---ALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LP-DNL--PPQITVLEITQNALIS-LP--ELPASL 102 (571)
T ss_dssp HHHHHTT---CCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CC-SCC--CTTCSEEECCSSCCSC-CC--CCCTTC
T ss_pred HHHHhcc---CCccccccchhhhccccccCCccEEEeCCCCCCc-cC-HhH--cCCCCEEECcCCCCcc-cc--cccCCC
Confidence 5567542 345532 68998 6865567778888777776 42 233 3677777777777773 33 456777
Q ss_pred CEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccC
Q 003307 116 EFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNN 195 (832)
Q Consensus 116 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N 195 (832)
++|+|++|.|++ +|. |.+ +|++|+|++|.|++ +|. .+++|++|+|++|+|++ +|. .+++|++|+|++|
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC
Confidence 777777777776 454 544 77777777777775 454 56777777777777765 333 4567777777777
Q ss_pred cCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCc-------CEEEccCCcccccCCCccccccccEEEc
Q 003307 196 QFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNL-------EVFDASNNHLVGAIPSFNFVFSLRILRL 268 (832)
Q Consensus 196 ~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~l~~L~~L~L 268 (832)
++++ +|. +. ++|+.|+|++|.|+ .+|. +.. +| +.|+|++|+|+...+.+..+++|+.|+|
T Consensus 171 ~L~~-lp~-l~-----~~L~~L~Ls~N~L~-~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 171 QLTF-LPE-LP-----ESLEALDVSTNLLE-SLPA---VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp CCSC-CCC-CC-----TTCCEEECCSSCCS-SCCC---CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred CCCC-cch-hh-----CCCCEEECcCCCCC-chhh---HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 7765 443 22 56677777777665 2332 221 44 5666666666532224444556666666
Q ss_pred cccCCCCCCChhh
Q 003307 269 GSNQLSGSLPVAL 281 (832)
Q Consensus 269 ~~N~l~~~~p~~~ 281 (832)
++|.+++.+|..+
T Consensus 238 ~~N~l~~~~p~~l 250 (571)
T 3cvr_A 238 EDNPLSSRIRESL 250 (571)
T ss_dssp CSSSCCHHHHHHH
T ss_pred eCCcCCCcCHHHH
Confidence 6666655555544
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.7e-21 Score=210.50 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=42.4
Q ss_pred CCEEECCCCCCCccCcccccCC--CCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCCEEE
Q 003307 115 LEFLDLSHNLFHGLIPSGIVSL--KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVVHVD 191 (832)
Q Consensus 115 L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~ 191 (832)
++.|++++|.+. +..+..+ ++++.|++++|.+++..+. +..+++|++|+|++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 445555555444 3344444 5555555555555544333 33455566666655555543 445555555555555
Q ss_pred CccCcCcc
Q 003307 192 LSNNQFSG 199 (832)
Q Consensus 192 Ls~N~l~~ 199 (832)
|++|.+++
T Consensus 125 L~~~~l~~ 132 (336)
T 2ast_B 125 LEGLRLSD 132 (336)
T ss_dssp CTTCBCCH
T ss_pred CcCcccCH
Confidence 55555543
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1e-19 Score=183.25 Aligned_cols=159 Identities=20% Similarity=0.268 Sum_probs=118.6
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
+..|.|.|..|.|.. +++.. + |..+. ++|+.|+|++|.+++..+ .|..+++|++|+|++|.|+++
T Consensus 6 P~~C~C~~~~v~c~~----------~~l~~-i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~ 71 (220)
T 2v9t_B 6 PAACTCSNNIVDCRG----------KGLTE-I-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71 (220)
T ss_dssp CTTSEEETTEEECTT----------SCCSS-C-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE
T ss_pred CCCCEECCCEEEcCC----------CCcCc-C-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc
Confidence 456777887777753 33322 2 22222 578889999998888777 788888999999999998888
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCC
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 208 (832)
.|..|.++++|++|+|++|.|+...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..+
T Consensus 72 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--- 148 (220)
T 2v9t_B 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--- 148 (220)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT---
T ss_pred CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH---
Confidence 88888888899999999998887766678888889999999988888888888888888888888888875443322
Q ss_pred CCCCCccEEECCCCCCe
Q 003307 209 SFISSIQYLNISENSLV 225 (832)
Q Consensus 209 ~~l~~L~~L~L~~N~l~ 225 (832)
..+++|+.|+|++|.+.
T Consensus 149 ~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred hCCCCCCEEEeCCCCcC
Confidence 23355555555555543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.7e-19 Score=180.12 Aligned_cols=180 Identities=20% Similarity=0.221 Sum_probs=142.2
Q ss_pred EEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCc
Q 003307 334 IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNH 413 (832)
Q Consensus 334 ~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 413 (832)
.++++.+.++..+.... .+|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 44445555444433222 268888888888887777778888999999999999987777778888999999999999
Q ss_pred ccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCC
Q 003307 414 LNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNN 493 (832)
Q Consensus 414 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 493 (832)
+++..+..|..+++|++|+|++|++++..+..+.... +|++|+|++|++++..+..+..+++|+.|+|++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT---------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC---------cCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 9887777788899999999999998865443333222 4899999999999877777899999999999999
Q ss_pred cCcccCCCCccCCCcEEEcCCCccccccCccCCCCCC
Q 003307 494 KFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPD 530 (832)
Q Consensus 494 ~l~g~ip~~~~~~L~~l~ls~N~l~g~~p~~~~~~~~ 530 (832)
++.+..| .|+.|+++.|+++|.+|..+...+.
T Consensus 159 ~~~~~~~-----~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWDCTCP-----GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBCCCTT-----TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CeecCCC-----CHHHHHHHHHhCCceeeccCccccC
Confidence 9987664 5889999999999999988766554
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=9e-19 Score=189.85 Aligned_cols=218 Identities=16% Similarity=0.058 Sum_probs=159.5
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCC-CCCCCCCCCCE-eeCcC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFP-SGFGGLGKLKY-LDLRA 170 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~ 170 (832)
+.++.++++++..+..+ .+++++|+|++|+|+.+.+..|.++++|++|+|++|++.+.+| .+|.++++|++ +.++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45667777787554455 4689999999999998877889999999999999999866554 57899999775 67778
Q ss_pred CCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCC-CCCeeccCCCCCCCCC-CCcCEEEccCC
Q 003307 171 NRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISE-NSLVGELFPHDGMPYF-DNLEVFDASNN 248 (832)
Q Consensus 171 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l-~~L~~L~Ls~N 248 (832)
|+++...+..|..+++|++|++++|++++..+..+. ...++..|++.+ +++.. ++.. .|..+ ..++.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~l~~l~l~~~~~i~~-l~~~-~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI---HSLQKVLLDIQDNINIHT-IERN-SFVGLSFESVILWLNKN 164 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC---CBSSCEEEEEESCTTCCE-ECTT-SSTTSBSSCEEEECCSS
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhc---ccchhhhhhhcccccccc-cccc-chhhcchhhhhhccccc
Confidence 999999999999999999999999999865443332 335677888865 45543 3332 25544 46888999999
Q ss_pred cccccCCCccccccccEEEccc-cCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCe
Q 003307 249 HLVGAIPSFNFVFSLRILRLGS-NQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNK 320 (832)
Q Consensus 249 ~l~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~ 320 (832)
+++...+......+|+.|++.+ |.++ .+|...+ ..+++|+.||+++|+|+...+ ....+|+.|.+.++.
T Consensus 165 ~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f-~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 165 GIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVF-HGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTY 234 (350)
T ss_dssp CCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTT-TTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCT
T ss_pred cccCCChhhccccchhHHhhccCCccc-CCCHHHh-ccCcccchhhcCCCCcCccCh-hhhccchHhhhccCC
Confidence 9987666555667888998875 4554 7776554 456778888888887775433 223456666555443
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3.9e-19 Score=180.18 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCc
Q 003307 52 GCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIP 130 (832)
Q Consensus 52 ~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p 130 (832)
.|.|+|.+|.|+...++. + |..+ .++|+.|+|++|.+++..+ .|..+++|++|+|++|+|+.+.+
T Consensus 16 ~~~Cs~~~v~c~~~~l~~-----------i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKRHAS-----------V-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81 (229)
T ss_dssp TCEEETTEEECTTSCCSS-----------C-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCEEeCCEeEccCCCcCc-----------c-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence 456699999997433222 2 1222 2678888888888888777 78888888888888888887776
Q ss_pred ccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCC
Q 003307 131 SGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSF 210 (832)
Q Consensus 131 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 210 (832)
..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++..+.. +..
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~ 157 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA---FDR 157 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT---TTT
T ss_pred hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH---HhC
Confidence 77788888888888888888777777888888888888888887 56677778888888888888777433222 223
Q ss_pred CCCccEEECCCCCC
Q 003307 211 ISSIQYLNISENSL 224 (832)
Q Consensus 211 l~~L~~L~L~~N~l 224 (832)
+++|+.|+|++|.+
T Consensus 158 l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 158 LSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTCCEEECTTSCB
T ss_pred CCCCCEEEeeCCCc
Confidence 34444555544444
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=178.32 Aligned_cols=162 Identities=20% Similarity=0.208 Sum_probs=136.4
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC--CCCCCCCCCEEECCCCCCCc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT--DIGSIQSLEFLDLSHNLFHG 127 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~ 127 (832)
++.|.|.|..+.| +++.+.. + |..+ ...++.|+|++|++++..+ .|..+++|++|+|++|.|++
T Consensus 6 P~~C~C~~~~l~~----------s~n~l~~-i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~ 71 (220)
T 2v70_A 6 PEKCRCEGTTVDC----------SNQKLNK-I-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71 (220)
T ss_dssp CTTCEEETTEEEC----------CSSCCSS-C-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE
T ss_pred CCCCEECCCEeEe----------CCCCccc-C-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE
Confidence 4567677765555 4555443 3 2233 2457899999999999865 48999999999999999999
Q ss_pred cCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCC
Q 003307 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGD 207 (832)
Q Consensus 128 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 207 (832)
+.+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..+.
T Consensus 72 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~- 150 (220)
T 2v70_A 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD- 150 (220)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-
T ss_pred ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-
Confidence 9888999999999999999999988888899999999999999999999999999999999999999999987776554
Q ss_pred CCCCCCccEEECCCCCCeecc
Q 003307 208 SSFISSIQYLNISENSLVGEL 228 (832)
Q Consensus 208 ~~~l~~L~~L~L~~N~l~~~~ 228 (832)
.+++|+.|+|++|.+.+..
T Consensus 151 --~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 151 --TLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp --TCTTCCEEECCSCCEECSG
T ss_pred --CCCCCCEEEecCcCCcCCC
Confidence 4689999999999997644
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1e-18 Score=199.26 Aligned_cols=192 Identities=22% Similarity=0.255 Sum_probs=127.7
Q ss_pred CCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCC
Q 003307 288 MLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLT 367 (832)
Q Consensus 288 ~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~ 367 (832)
+++.|++++|.+++..+.. ..+|++|+|++|+|+ .+|..+.+|+.|++++|+|++... +.. +|+.|+|++|.|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~l~~ip~-l~~---~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPE-LPA---SLKHLDVDNNQLT 133 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCC-CCT---TCCEEECCSSCCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccccccCCCCEEEccCCCCCCcch-hhc---CCCEEECCCCcCC
Confidence 4445555555544422112 244555555555555 344444566666666666666333 222 6888888888888
Q ss_pred CCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccc
Q 003307 368 GMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEI 447 (832)
Q Consensus 368 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 447 (832)
+ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++|+|++ +|. |. ++|+.|+|++|+|+ .+|. +.
T Consensus 134 ~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~ 199 (571)
T 3cvr_A 134 M-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VP 199 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC
T ss_pred C-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HH
Confidence 7 454 57888889999998886 555 56788999999998887 444 54 88999999999888 5554 22
Q ss_pred cCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc
Q 003307 448 QNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP 504 (832)
Q Consensus 448 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 504 (832)
. . +......|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..+.
T Consensus 200 ~--~--L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 200 V--R--NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp ------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred H--h--hhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 2 1 1111112389999999998 5788888899999999999999888776543
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=1.5e-19 Score=196.87 Aligned_cols=161 Identities=23% Similarity=0.138 Sum_probs=120.0
Q ss_pred CCCCEEEcCCCCCcccCC-CCC-CCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIG-SIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
..++.|+|++|+|++..+ .+. .+++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 457888888888888777 566 888888888888888888778888888888888888888877777888888888888
Q ss_pred CcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccC
Q 003307 168 LRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN 247 (832)
Q Consensus 168 L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 247 (832)
|++|+|++..+..|.++++|++|+|++|++++..+..+.. +..+++|+.|+|++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--------------------------~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD--------------------------GNKLPKLMLLDLSS 172 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------------------------------CTTCCEEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC--------------------------cccCCcCCEEECCC
Confidence 8888888877888888888888888888887422211111 13456677777777
Q ss_pred CcccccCC-Ccccccc--ccEEEccccCCCCC
Q 003307 248 NHLVGAIP-SFNFVFS--LRILRLGSNQLSGS 276 (832)
Q Consensus 248 N~l~~~~~-~~~~l~~--L~~L~L~~N~l~~~ 276 (832)
|++++..+ .+..++. |+.|+|++|.+...
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 77765443 4555655 47788888888743
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.6e-18 Score=182.42 Aligned_cols=173 Identities=21% Similarity=0.245 Sum_probs=124.9
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
.+..+++|+.|++++|.+... +.+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++. | .+..+++|+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~ 115 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLK 115 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCC
T ss_pred chhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCC
Confidence 345677888888888887754 457778888888888888887654 88888888888888888753 3 478888888
Q ss_pred EeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 165 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
+|+|++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|+
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~ 184 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLY 184 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEE
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCccccchh----hcCCCccCEEE
Confidence 888888888764 4577888888888888887743 234455677777777777765332 55667777777
Q ss_pred ccCCcccccCCCccccccccEEEccccCCC
Q 003307 245 ASNNHLVGAIPSFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 245 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~ 274 (832)
+++|.+++ ++.+..+++|+.|++++|+++
T Consensus 185 L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 185 LSKNHISD-LRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCSSCCCB-CGGGTTCTTCSEEEEEEEEEE
T ss_pred CCCCcCCC-ChhhccCCCCCEEECcCCccc
Confidence 77777764 345666677777777777665
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=7.1e-18 Score=169.68 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=115.4
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCc-ccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIP-SGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
+.+++++|.++..+..+. ..+++|+|++|.|++..+ ..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 479999999987544553 457899999999998855 45889999999999999999888889999999999999999
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++++..+..|..+++|++|+|++|++++..|..+. .+++|++|+|++|++++..+.. |..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGA--FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST---TCTTCSEEECTTSCCCCBCTTT--TTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC---CCccCCEEECCCCcCCEECHHH--hcCCCCCCEEEecCcCCc
Confidence 99999998999999999999999999866554433 2355555555555555443333 444444444444444444
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=6.7e-18 Score=169.86 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=114.5
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 172 (832)
+.++++++.++..+..+. ++|++|+|++|.|+++.+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 468888888886654554 789999999999998888899999999999999999998889999999999999999999
Q ss_pred CCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 173 FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 173 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
|+...+..|.++++|++|+|++|++++..+..+. .+++|+.|+|++|.+++..+.. +..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGT--FSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC---CCCCCCEEECCCCcCCEECHHH--HhCCCCCCEEEeCCCCcC
Confidence 9988778888899999999999988865444332 3355555555555554433222 444444444444444443
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2.8e-18 Score=198.03 Aligned_cols=174 Identities=22% Similarity=0.242 Sum_probs=138.3
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
.+..|++|+.|+|++|.+... +.+..+++|+.|+|++|.|++..| |..+++|+.|+|++|.|++. ..|..+++|+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred chhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 356678888899999888754 468888999999999999987755 88899999999999998853 3688899999
Q ss_pred EeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 165 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
+|+|++|++++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..+ +..+++|+.|+
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~ 181 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLY 181 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEE
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEE
Confidence 999999998864 4588889999999999988853 334556788888888888876543 66778888888
Q ss_pred ccCCcccccCCCccccccccEEEccccCCCC
Q 003307 245 ASNNHLVGAIPSFNFVFSLRILRLGSNQLSG 275 (832)
Q Consensus 245 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 275 (832)
|++|++++. +.+..+++|+.|+|++|++.+
T Consensus 182 Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 182 LSKNHISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence 888888754 567778888888888888764
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=8.2e-18 Score=194.07 Aligned_cols=166 Identities=17% Similarity=0.272 Sum_probs=92.9
Q ss_pred CCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
+..+.+..+.+.... .+..+++|+.|+|++|.|+.. | .|..+++|+.|+|++|.|++..| |..+++|++|+|++|
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 444555555555433 345566777777777777644 2 46667777777777777775444 667777777777777
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
.+++. ..+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.+++. +. +..+++|+.|+|++|.+.
T Consensus 98 ~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~l--~~--l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 98 KIKDL--SSLKDLKKLKSLSLEHNGISDI-----NGLVHLPQLESLYLGNNKITDI--TV--LSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCCCC--TTSTTCTTCCEEECTTSCCCCC-----GGGGGCTTCSEEECCSSCCCCC--GG--GGSCTTCSEEECCSSCCC
T ss_pred CCCCC--hhhccCCCCCEEEecCCCCCCC-----ccccCCCccCEEECCCCccCCc--hh--hcccCCCCEEECcCCcCC
Confidence 76642 2466666666666666666531 1233345555555555555432 11 444444555555555444
Q ss_pred ccCCCccccccccEEEccccCCC
Q 003307 252 GAIPSFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 252 ~~~~~~~~l~~L~~L~L~~N~l~ 274 (832)
+..| +..+++|+.|+|++|+|+
T Consensus 167 ~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 167 DIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCC
T ss_pred Cchh-hccCCCCCEEECcCCCCC
Confidence 4333 444444444444444444
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.5e-17 Score=166.86 Aligned_cols=151 Identities=20% Similarity=0.173 Sum_probs=108.4
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 172 (832)
+.++.+++.+...+..+. ++|++|+|++|.|+++.|..|.++++|++|+|++|+|+...+..|.++++|++|+|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345666666665444443 889999999999999989999999999999999999987777788999999999999999
Q ss_pred CCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 173 FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 173 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
|++..+..|..+++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++..+.. +..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~---~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE---RLTHLTHLALDQNQLKSIPHGA--FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG---GCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccc---cCCCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCCcc
Confidence 99888888889999999999999887 4444332 2345555555555554322211 344444444444444443
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=6.6e-18 Score=177.78 Aligned_cols=166 Identities=17% Similarity=0.273 Sum_probs=107.8
Q ss_pred CCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
+..+.+..+.+.+.. .+..+++|++|++++|.++.. + .+..+++|++|+|++|++++..+ +.++++|++|+|++|
T Consensus 26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 344456666665432 345678888888888888865 3 47888888888888888886544 888888888888888
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++++. ..+..+++|++|+|++|++++. ..+..+++|+.|++++|.+++. +. +..+++|+.|++++|.++
T Consensus 101 ~l~~~--~~l~~l~~L~~L~L~~n~i~~~-----~~l~~l~~L~~L~l~~n~l~~~--~~--l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 101 KVKDL--SSLKDLKKLKSLSLEHNGISDI-----NGLVHLPQLESLYLGNNKITDI--TV--LSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CCCCG--GGGTTCTTCCEEECTTSCCCCC-----GGGGGCTTCCEEECCSSCCCCC--GG--GGGCTTCSEEECCSSCCC
T ss_pred cCCCC--hhhccCCCCCEEECCCCcCCCC-----hhhcCCCCCCEEEccCCcCCcc--hh--hccCCCCCEEEccCCccc
Confidence 88763 3377888888888888887742 2233445666666666665542 11 445555555555555555
Q ss_pred ccCCCccccccccEEEccccCCC
Q 003307 252 GAIPSFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 252 ~~~~~~~~l~~L~~L~L~~N~l~ 274 (832)
+..+ +..+++|+.|++++|+++
T Consensus 170 ~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 170 DIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCC
T ss_pred cchh-hcCCCccCEEECCCCcCC
Confidence 4333 444555555555555554
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.2e-17 Score=181.77 Aligned_cols=180 Identities=24% Similarity=0.242 Sum_probs=114.8
Q ss_pred CEEEecCCeecccCCCCCC-CCCEEecCCCCCcCcchhhcc-ccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCc
Q 003307 312 KKVNLSSNKLSGSLPARVG-HCTIVDLSNNRLSGDLSRMQN-WGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS 389 (832)
Q Consensus 312 ~~L~L~~N~l~~~~p~~l~-~l~~L~L~~N~l~~~~~~~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 389 (832)
+.+++++|+++. +|..+. .++.|+|++|+|++..+..+. ...+|+.|+|++|.|+++.+..|.++++|++|+|++|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSS-CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCc-cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 455555555552 343332 345566666666555554443 44567777777777777777777777777777777777
Q ss_pred CCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCC
Q 003307 390 LEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYN 469 (832)
Q Consensus 390 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N 469 (832)
|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++ +|...... .....+|+.|||++|
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~-----~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKD-----GNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC---------CTTCCEEECCSS
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcC-----cccCCcCCEEECCCC
Confidence 776666677777777777777777777777777777777777777777764 33322110 001123777777777
Q ss_pred cCcccCChhhhcCCC--CCEEeCcCCcCccc
Q 003307 470 SLSGRLLPGISKFHN--LVYLNLSNNKFEGS 498 (832)
Q Consensus 470 ~l~~~~p~~l~~l~~--L~~L~Ls~N~l~g~ 498 (832)
+|++..+..+..++. |+.|+|++|++.+.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 777655556666665 36677777776643
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=6.8e-18 Score=165.94 Aligned_cols=138 Identities=22% Similarity=0.315 Sum_probs=108.0
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCC--CCCCCCCCEEECCCCCCCc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITD--IGSIQSLEFLDLSHNLFHG 127 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~L~~L~Ls~N~l~~ 127 (832)
+..|.|.|..+.| +++++. .+| ..+. .+|+.|+|++|.+++..+. |+.+++|++|+|++|.|++
T Consensus 3 P~~C~C~~~~l~~----------s~~~l~-~ip-~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 3 PAMCHCEGTTVDC----------TGRGLK-EIP-RDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68 (192)
T ss_dssp CTTSEEETTEEEC----------TTSCCS-SCC-SCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred CCCCEECCCEEEc----------CCCCcC-cCc-cCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC
Confidence 3567777765555 444442 332 2232 3788899999988887762 7888889999999998888
Q ss_pred cCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcccc
Q 003307 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201 (832)
Q Consensus 128 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 201 (832)
..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+++..
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 88888888888999999999988888888888888888888888888888888888888888888888887543
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=8.5e-19 Score=207.58 Aligned_cols=203 Identities=16% Similarity=0.123 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEc
Q 003307 18 QSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSV 97 (832)
Q Consensus 18 ~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L 97 (832)
..++++|+++.......... .-..|.... .. .+.|.++.++..+++.++|..+++... ....|+.++|
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~--~~~~~~~~~s~~~~~~l~L~~n~~~~~-------~~~~l~~l~L 198 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTA-KKQQPTGDS--TP--SGTATNSAVSTPLTPKIELFANGKDEA-------NQALLQHKKL 198 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTT-C----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCc-ccCCCcCCC--Cc--cccCCCceecCCccceEEeeCCCCCcc-------hhhHhhcCcc
Confidence 45678888888765211101 122343221 12 237988888888888888887776542 1233555666
Q ss_pred CCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCcc
Q 003307 98 SNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI 177 (832)
Q Consensus 98 s~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 177 (832)
+.|.|. .++++.|.+. ..|..|..++.|+.|+|++|.+. .+|..+.++++|++|+|++|+|+ .+
T Consensus 199 s~~~i~-------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~l 262 (727)
T 4b8c_D 199 SQYSID-------------EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-EL 262 (727)
T ss_dssp -------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CC
T ss_pred Cccccc-------------Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-cc
Confidence 665543 3455556555 55667777777777777777777 45666667777777777777777 56
Q ss_pred chhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC
Q 003307 178 MHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP 255 (832)
Q Consensus 178 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 255 (832)
|..|.++++|++|+|++|.|+ .+|..++. +++|++|+|++|.|+ .+|.. |..+++|+.|+|++|.+++.+|
T Consensus 263 p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---l~~L~~L~L~~N~l~-~lp~~--~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 263 PAEIKNLSNLRVLDLSHNRLT-SLPAELGS---CFQLKYFYFFDNMVT-TLPWE--FGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CGGGGGGTTCCEEECTTSCCS-SCCSSGGG---GTTCSEEECCSSCCC-CCCSS--TTSCTTCCCEECTTSCCCSHHH
T ss_pred ChhhhCCCCCCEEeCcCCcCC-ccChhhcC---CCCCCEEECCCCCCC-ccChh--hhcCCCccEEeCCCCccCCCCh
Confidence 667777777777777777776 44544332 244444444444443 23333 4445555555555555554444
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.9e-17 Score=163.65 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=112.4
Q ss_pred ccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCE
Q 003307 86 IIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKY 165 (832)
Q Consensus 86 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 165 (832)
...+++|+.|++++|.+.. ++.+..+++|++|++++|.++.. ..+..+++|++|++++|.+++..+..|.++++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD-LTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC-CTTGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccC-hHHHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3567789999999999984 34788899999999999977643 47889999999999999999888889999999999
Q ss_pred eeCcCCCCCCccchhhhcCCCCCEEECccCc-CccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 166 LDLRANRFGGDIMHLLSQLGSVVHVDLSNNQ-FSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 166 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
|+|++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+++.. . +..+++|+.|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~----~l~~l~~L~~L~l~~n~i~~~~--~--l~~l~~L~~L~ 187 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM----PLKTLPELKSLNIQFDGVHDYR--G--IEDFPKLNQLY 187 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG----GGGGCSSCCEEECTTBCCCCCT--T--GGGCSSCCEEE
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH----hhcCCCCCCEEECCCCCCcChH--H--hccCCCCCEEE
Confidence 9999999988888889999999999999997 54 222 2233455555555555554311 1 33444444444
Q ss_pred ccCCcc
Q 003307 245 ASNNHL 250 (832)
Q Consensus 245 Ls~N~l 250 (832)
+++|++
T Consensus 188 l~~N~i 193 (197)
T 4ezg_A 188 AFSQTI 193 (197)
T ss_dssp ECBC--
T ss_pred eeCccc
Confidence 444443
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=2.3e-17 Score=160.01 Aligned_cols=138 Identities=21% Similarity=0.202 Sum_probs=109.9
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
++.|.|+|.++.|+...++. + +. .-.++|+.|++++|++++..+ .+..+++|++|+|++|.|++.
T Consensus 2 p~~C~C~~~~l~~~~~~l~~-----------~-p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (177)
T 2o6r_A 2 PSRCSCSGTEIRCNSKGLTS-----------V-PT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67 (177)
T ss_dssp CTTCEEETTEEECCSSCCSS-----------C-CT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred cCCCEeCCCEEEecCCCCcc-----------C-CC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe
Confidence 35688899988886433222 1 11 123688999999999987776 678899999999999999888
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcccc
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 201 (832)
.+..|..+++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|.+++..
T Consensus 68 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7777888999999999999998877777888999999999999998777777788888888888888887543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=8.2e-18 Score=174.18 Aligned_cols=165 Identities=16% Similarity=0.264 Sum_probs=69.4
Q ss_pred CCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
+..++++.|.+++.. .+..+++|++|++++|.|+.. | .+..+++|++|+|++|+|++..+ |.++++|++|+|++|
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 333444444443322 333444444444444444422 2 34444444444444444443322 444444444444444
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++++..+ +.. ++|++|+|++|++++. ..+..+++|+.|++++|++++. + . +..+++|+.|++++|+++
T Consensus 96 ~l~~l~~--~~~-~~L~~L~L~~N~l~~~-----~~l~~l~~L~~L~Ls~N~i~~~-~-~--l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 96 RLKNLNG--IPS-ACLSRLFLDNNELRDT-----DSLIHLKNLEILSIRNNKLKSI-V-M--LGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSCCTT--CCC-SSCCEEECCSSCCSBS-----GGGTTCTTCCEEECTTSCCCBC-G-G--GGGCTTCCEEECTTSCCC
T ss_pred ccCCcCc--ccc-CcccEEEccCCccCCC-----hhhcCcccccEEECCCCcCCCC-h-H--HccCCCCCEEECCCCcCc
Confidence 4443211 111 4444444444444421 1122334444444444444332 1 1 444455555555555554
Q ss_pred ccCCCccccccccEEEccccCCC
Q 003307 252 GAIPSFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 252 ~~~~~~~~l~~L~~L~L~~N~l~ 274 (832)
+. +.+..+++|+.|++++|.++
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEEEE
T ss_pred ch-HHhccCCCCCEEeCCCCccc
Confidence 43 44444555555555555554
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=7.3e-17 Score=158.54 Aligned_cols=161 Identities=19% Similarity=0.241 Sum_probs=102.2
Q ss_pred cEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccc-ccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccC
Q 003307 357 EDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSG 435 (832)
Q Consensus 357 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 435 (832)
+.+++++|.++ .+|..+.. +|++|++++|+|++..+. .|..+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 55666666664 34443322 667777777777655443 366677777777777777776666777777777777777
Q ss_pred CcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc-CCCcEEEcCC
Q 003307 436 NNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP-NGLKEFNVSF 514 (832)
Q Consensus 436 N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~L~~l~ls~ 514 (832)
|+|++..|..+.... +|++|+|++|+|++.+|..+..+++|+.|+|++|++++..+.... ..++...+..
T Consensus 88 N~l~~~~~~~~~~l~---------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~ 158 (192)
T 1w8a_A 88 NKIKEISNKMFLGLH---------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNG 158 (192)
T ss_dssp CCCCEECSSSSTTCT---------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSG
T ss_pred CcCCccCHHHhcCCC---------CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCC
Confidence 777665554333222 377777777777777778888888888888888888877653221 2233334445
Q ss_pred CccccccCccCCCCC
Q 003307 515 NNLSGVVPENLRNFP 529 (832)
Q Consensus 515 N~l~g~~p~~~~~~~ 529 (832)
+...+..|..++..+
T Consensus 159 ~~~~C~~P~~l~~~~ 173 (192)
T 1w8a_A 159 GAARCGAPSKVRDVQ 173 (192)
T ss_dssp GGCBBCSSTTTTTSB
T ss_pred CCCCCCCChHHcCCC
Confidence 555666666554443
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=5.6e-19 Score=202.66 Aligned_cols=204 Identities=20% Similarity=0.104 Sum_probs=121.1
Q ss_pred CCCCCcCEEEccCCcccccCCCccccccccEEEccccC-------------CCCCCChhhhhhCCCCCCEEE-CCCCCCC
Q 003307 235 PYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQ-------------LSGSLPVALLQESSMMLSELD-LSLNQLE 300 (832)
Q Consensus 235 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~~~~~~L~~L~-L~~N~l~ 300 (832)
..+++|+.|+|++|+++..++.++.+++|+.|++++|. +.+..|..+ ..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l--~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL--QYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHH--HHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHH--HHHHhcccCcchhhcccc
Confidence 45667777788888776433377777778888776664 233333333 2233344444 3333221
Q ss_pred CccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCC
Q 003307 301 GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRL 380 (832)
Q Consensus 301 ~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L 380 (832)
.|..+.+++|.++ ...+ ..|+.|+|++|.|++ +|. +..+++|
T Consensus 424 ---------~L~~l~l~~n~i~---------------------~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L 465 (567)
T 1dce_A 424 ---------DLRSKFLLENSVL---------------------KMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV 465 (567)
T ss_dssp ---------HHHHHHHHHHHHH---------------------HHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC
T ss_pred ---------hhhhhhhhccccc---------------------ccCc------cCceEEEecCCCCCC-CcC-ccccccC
Confidence 1222233333333 2111 136667777777765 344 6677777
Q ss_pred CEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccC-CcccccCCCCCcccCcc
Q 003307 381 TSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPL-PLQEIQNNPSTGSTQNL 459 (832)
Q Consensus 381 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~~~~~~ 459 (832)
+.|+|++|+|+ .+|..++.+++|+.|+|++|+|++ +| .+..+++|+.|+|++|+|++.+ |..+..+..
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~-------- 534 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR-------- 534 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT--------
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC--------
Confidence 77777777777 566677777777777777777776 34 6677777777777777777665 655544432
Q ss_pred cccEEEccCCcCcccCCh---hhhcCCCCCEEeC
Q 003307 460 SLTSLDLAYNSLSGRLLP---GISKFHNLVYLNL 490 (832)
Q Consensus 460 ~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L 490 (832)
|+.|+|++|+|++.+|. .+..+++|+.||+
T Consensus 535 -L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 535 -LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777777777765442 2345788888865
No 120
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.68 E-value=1e-16 Score=168.07 Aligned_cols=86 Identities=22% Similarity=0.435 Sum_probs=75.6
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||+||+|++. +|..||||+++.......++|.+|+++|++++|||||+++|+|.+.+. .+||||
T Consensus 18 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~--~~lV~E 95 (299)
T 4asz_A 18 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP--LIMVFE 95 (299)
T ss_dssp EEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS--EEEEEE
T ss_pred eeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCE--EEEEEE
Confidence 568999999999999863 578899999987666667889999999999999999999999998877 999999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
||++|+|.++|+..
T Consensus 96 y~~~G~L~~~l~~~ 109 (299)
T 4asz_A 96 YMKHGDLNKFLRAH 109 (299)
T ss_dssp CCTTCBHHHHHHHT
T ss_pred cCCCCcHHHHHHhc
Confidence 99999999999864
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=3.5e-19 Score=204.32 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=36.0
Q ss_pred cCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC-------------CCCccchhhhcCCCCCEEE-CccCcC
Q 003307 134 VSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR-------------FGGDIMHLLSQLGSVVHVD-LSNNQF 197 (832)
Q Consensus 134 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~~~~l~~l~~L~~L~-Ls~N~l 197 (832)
..+++|+.|+|++|+|+ .+|..++++++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 34555666666666665 445556666666666665443 3445566666666666666 454443
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.4e-16 Score=164.79 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=136.9
Q ss_pred EEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccc
Q 003307 70 IMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSF 149 (832)
Q Consensus 70 l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 149 (832)
++++.+.+.+. +.+..+++|+.|++++|.++.. +.+..+++|++|+|++|.|++..+ |..+++|++|+|++|++
T Consensus 24 l~l~~~~i~~~---~~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 24 QNLGKQSVTDL---VSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHTCSCTTSE---ECHHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred HHhcCCCcccc---cchhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence 34455554432 3577889999999999999864 478899999999999999998765 99999999999999999
Q ss_pred cccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccC
Q 003307 150 EGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELF 229 (832)
Q Consensus 150 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 229 (832)
++. |. +.. ++|++|+|++|++++. ..+..+++|++|+|++|++++. + .+..+++|+.|++++|.+++.
T Consensus 98 ~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~----~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 98 KNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V----MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G----GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h----HHccCCCCCEEECCCCcCcch--
Confidence 964 43 333 9999999999999874 3589999999999999999864 2 355679999999999999876
Q ss_pred CCCCCCCCCCcCEEEccCCccccc
Q 003307 230 PHDGMPYFDNLEVFDASNNHLVGA 253 (832)
Q Consensus 230 ~~~~~~~l~~L~~L~Ls~N~l~~~ 253 (832)
.. +..+++|+.|++++|.++..
T Consensus 166 ~~--l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GG--LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TT--STTCCCCCEEEEEEEEEECC
T ss_pred HH--hccCCCCCEEeCCCCcccCC
Confidence 33 88999999999999999865
No 123
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=168.98 Aligned_cols=86 Identities=22% Similarity=0.406 Sum_probs=77.5
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||+||+|++. +|+.||||+++.......++|.+|+++|++++|||||+++|+|.+.+. .+||||
T Consensus 46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~--~~lV~E 123 (329)
T 4aoj_A 46 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRP--LLMVFE 123 (329)
T ss_dssp EEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS--EEEEEE
T ss_pred EEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEE
Confidence 567999999999999863 578999999987766667889999999999999999999999998877 999999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
||++|+|.++|+..
T Consensus 124 y~~~G~L~~~l~~~ 137 (329)
T 4aoj_A 124 YMRHGDLNRFLRSH 137 (329)
T ss_dssp CCTTCBHHHHHHTS
T ss_pred cCCCCcHHHHHHhc
Confidence 99999999999864
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=156.98 Aligned_cols=109 Identities=21% Similarity=0.318 Sum_probs=80.5
Q ss_pred CCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCc
Q 003307 90 KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 169 (832)
++|+.|+|++|.++.....|..+++|++|+|++|.|+++.+..|.++++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 46777777777776433367777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCccchhhhcCCCCCEEECccCcCc
Q 003307 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 170 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+|+|+...+..|..+++|++|+|++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77777666666777777777777777765
No 125
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=5.9e-16 Score=152.82 Aligned_cols=152 Identities=14% Similarity=0.213 Sum_probs=81.9
Q ss_pred ccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecC
Q 003307 259 FVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLS 338 (832)
Q Consensus 259 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~ 338 (832)
.+++|+.|++++|.++ .+| .+ ..+++|++|++++|.++........++|++|++++|++++..|..+..++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l--~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~----- 112 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GI--EYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT----- 112 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TG--GGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT-----
T ss_pred hcCCccEEeccCCCcc-ChH-HH--hcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCC-----
Confidence 3445555555555554 333 22 23444555555544443322222234455555555555544444444333
Q ss_pred CCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCc-CCCCcccccCCCCCCCEEEccCCccccc
Q 003307 339 NNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS-LEGDLPAVLGTYPELKVIDLSLNHLNGF 417 (832)
Q Consensus 339 ~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 417 (832)
+|+.|++++|.+++..|..+..+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++.
T Consensus 113 ----------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 113 ----------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp ----------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred ----------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh
Confidence 56666666666666566666666667777777666 44 344 466666677777777666653
Q ss_pred CcccccCCCCCCeEeccCCccc
Q 003307 418 LLPSFFTSTKLTDLNLSGNNFS 439 (832)
Q Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~ 439 (832)
. .+..+++|+.|++++|++.
T Consensus 175 ~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp T--TGGGCSSCCEEEECBC---
T ss_pred H--HhccCCCCCEEEeeCcccC
Confidence 2 5566666666666666654
No 126
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.63 E-value=5.8e-16 Score=163.01 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||+||+|++ .+++.||||+++... ....++|.+|++++++++|||||+++|+|...+. .+|||
T Consensus 31 ~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~--~~lV~ 108 (308)
T 4gt4_A 31 MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP--LSMIF 108 (308)
T ss_dssp EEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCE--EEEEE
Confidence 45799999999999986 256889999996542 3346789999999999999999999999998777 99999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
|||++|+|.++|+.+
T Consensus 109 Ey~~~G~L~~~L~~~ 123 (308)
T 4gt4_A 109 SYCSHGDLHEFLVMR 123 (308)
T ss_dssp ECCSSCBHHHHHHTT
T ss_pred EcCCCCcHHHHHHhh
Confidence 999999999999764
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=5.3e-17 Score=192.21 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=59.9
Q ss_pred ccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKL 163 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 163 (832)
..+..++.|+.|+|++|.+....+.+..+++|++|+|++|.|+ .+|..|++|++|++|+|++|.|+ .+|..|+++++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 3445555555555555555532224445555555555555555 44555555555555555555555 445555555555
Q ss_pred CEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCC
Q 003307 164 KYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDL 203 (832)
Q Consensus 164 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 203 (832)
++|+|++|.|+ .+|..|+.+++|++|+|++|.|++.+|.
T Consensus 296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 55555555554 3344455555555555555555544443
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.2e-15 Score=146.34 Aligned_cols=86 Identities=27% Similarity=0.314 Sum_probs=65.0
Q ss_pred CCCCCEEECCCCCCC-ccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEE
Q 003307 112 IQSLEFLDLSHNLFH-GLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHV 190 (832)
Q Consensus 112 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 190 (832)
.++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..|..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 466777777777776 56676777777888888888887755 667778888888888888877677777777788888
Q ss_pred ECccCcCcc
Q 003307 191 DLSNNQFSG 199 (832)
Q Consensus 191 ~Ls~N~l~~ 199 (832)
+|++|.+++
T Consensus 101 ~Ls~N~l~~ 109 (168)
T 2ell_A 101 NLSGNKLKD 109 (168)
T ss_dssp ECBSSSCCS
T ss_pred eccCCccCc
Confidence 888777763
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=4.8e-15 Score=142.21 Aligned_cols=136 Identities=26% Similarity=0.234 Sum_probs=110.2
Q ss_pred CcccEEEcCCCcCC-CCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 354 NYVEDIHLSSNFLT-GMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 354 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
.+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46889999999988 67788888899999999999999865 7788899999999999999987788888899999999
Q ss_pred ccCCcccccCC-cccccCCCCCcccCcccccEEEccCCcCcccCC---hhhhcCCCCCEEeCcCCcCcccCCC
Q 003307 433 LSGNNFSGPLP-LQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL---PGISKFHNLVYLNLSNNKFEGSIPD 501 (832)
Q Consensus 433 Ls~N~l~~~~p-~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~g~ip~ 501 (832)
|++|++++..+ ..+... .+|++|++++|.+++..+ ..+..+++|+.|++++|.+. .+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l---------~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKL---------ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSC---------SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcC---------CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999886422 222222 248899999999987665 47888999999999999887 4444
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=6.4e-16 Score=145.08 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=60.5
Q ss_pred CCCCEEEcCCCCCc-ccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 90 KMLCNVSVSNNQLM-GNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
++|+.|++++|.++ +.+| .+..+++|++|+|++|.+++. ..|..+++|++|+|++|.+++.+|..+.++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45556666666655 3444 455556666666666665544 4455555666666666665554555555555566666
Q ss_pred CcCCCCCCc-cchhhhcCCCCCEEECccCcCcc
Q 003307 168 LRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSG 199 (832)
Q Consensus 168 L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~ 199 (832)
|++|++++. .+..+..+++|++|++++|.+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 666655543 23455555555555555555553
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=142.28 Aligned_cols=126 Identities=25% Similarity=0.243 Sum_probs=97.6
Q ss_pred EEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCC
Q 003307 94 NVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173 (832)
Q Consensus 94 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 173 (832)
.+++++|.++..+..+ .++|++|+|++|.|+ .+|..|.++++|++|+|++|.|++..+..|.++++|++|+|++|+|
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3444555555333333 268999999999998 5678999999999999999999988888999999999999999999
Q ss_pred CCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCe
Q 003307 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLV 225 (832)
Q Consensus 174 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 225 (832)
++..+..|..+++|++|+|++|.+++..+.. +..+++|+.|+|++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGA---FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTT---TTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhh---hhcCccccEEEeCCCCee
Confidence 9988889999999999999999988433322 223455555555555553
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=9.8e-16 Score=164.40 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=66.7
Q ss_pred EecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCC-EEEccCCcCCCCcccccCCCCCCCEEEccCCc
Q 003307 335 VDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLT-SFKVSNNSLEGDLPAVLGTYPELKVIDLSLNH 413 (832)
Q Consensus 335 L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 413 (832)
++|++|+++......|..+.+|+.|+|.+| ++.+.+.+|.++.+|+ .+++.+ .++...+.+|.++++|+.|+++.|+
T Consensus 231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp EECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred EECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 333333333333344444446777888777 6666777788888888 888877 6765666778888888888888888
Q ss_pred ccccCcccccCCCCCCeEe
Q 003307 414 LNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 414 l~~~~~~~~~~l~~L~~L~ 432 (832)
++.+.+.+|.++++|+.++
T Consensus 309 i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 309 ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTCTTCCCCEEE
T ss_pred cCccchhhhcCCcchhhhc
Confidence 8877777788888887775
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.7e-14 Score=139.68 Aligned_cols=106 Identities=23% Similarity=0.227 Sum_probs=84.5
Q ss_pred CCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
.+.+++++|+++..+..+ .++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 466778888877654333 368888888888888777777888888888888888888777777888888888888888
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCcc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSG 199 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 199 (832)
++++..+..+..+++|++|+|++|++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceE
Confidence 8887777778888888888888888773
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=6.6e-15 Score=138.13 Aligned_cols=128 Identities=26% Similarity=0.213 Sum_probs=104.9
Q ss_pred CcccEEEcCCCcCC-CCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 354 NYVEDIHLSSNFLT-GMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 354 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
.+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 36899999999998 77888888999999999999999866 7788899999999999999987888888899999999
Q ss_pred ccCCccccc-CCcccccCCCCCcccCcccccEEEccCCcCcccCC---hhhhcCCCCCEEeCcC
Q 003307 433 LSGNNFSGP-LPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL---PGISKFHNLVYLNLSN 492 (832)
Q Consensus 433 Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~ 492 (832)
+++|++++. .+..+.... +|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~---------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLE---------NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCT---------TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCC---------CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999998863 223333332 38889999998887766 5788888999888864
No 135
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.55 E-value=6.1e-15 Score=154.49 Aligned_cols=89 Identities=25% Similarity=0.343 Sum_probs=75.3
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||+||+|++. ..||||+++.. .....++|.+|++++++++|||||+++|+|.. +. .+||||||++
T Consensus 41 ~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~--~~iVmEy~~g 115 (307)
T 3omv_A 41 STRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DN--LAIVTQWCEG 115 (307)
T ss_dssp EEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SS--CEEEEECCSS
T ss_pred eeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-Ce--EEEEEEcCCC
Confidence 567999999999999975 36999998643 33456789999999999999999999999864 44 7999999999
Q ss_pred CCHHHHHhcC-CCcccc
Q 003307 815 QSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w~ 830 (832)
|+|+++|+.. ..++|.
T Consensus 116 GsL~~~l~~~~~~l~~~ 132 (307)
T 3omv_A 116 SSLYKHLHVQETKFQMF 132 (307)
T ss_dssp CBHHHHHHTSCCCCCHH
T ss_pred CCHHHHHhhcCCCCCHH
Confidence 9999999864 468774
No 136
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.55 E-value=8.7e-15 Score=152.17 Aligned_cols=94 Identities=19% Similarity=0.298 Sum_probs=78.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--CCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--KEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--~~~~~~lv~e~ 811 (832)
+..||+|+||+||+|+.. +|..||||++... .....+.|.+|++++++++|||||+++++|.+. .....+|||||
T Consensus 31 ~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy 110 (290)
T 3fpq_A 31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL 110 (290)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEEC
T ss_pred eeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeC
Confidence 456999999999999974 7999999998543 333457799999999999999999999998652 22237999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++|++.+.++|.
T Consensus 111 ~~gg~L~~~l~~~~~l~~~ 129 (290)
T 3fpq_A 111 MTSGTLKTYLKRFKVMKIK 129 (290)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred CCCCCHHHHHHhcCCCCHH
Confidence 9999999999988777764
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.2e-14 Score=155.94 Aligned_cols=269 Identities=11% Similarity=0.110 Sum_probs=137.4
Q ss_pred CCCCCEEEcCCCCCcccCCCCCC-CCCCCEEECCCCCCC--ccCcccccCCCCCCEEEcccccccccCCCCCCC------
Q 003307 89 LKMLCNVSVSNNQLMGNITDIGS-IQSLEFLDLSHNLFH--GLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGG------ 159 (832)
Q Consensus 89 l~~L~~L~Ls~n~l~~~~~~~~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------ 159 (832)
+.+++.|+++++--......+.. +++|+.|||++|+|. ...+. .++.++.+.+..|. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhcccccccc
Confidence 55677888776421111112333 677888888888777 22222 22234555555553 33456666
Q ss_pred --CCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCC
Q 003307 160 --LGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYF 237 (832)
Q Consensus 160 --l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 237 (832)
+++|+.|+|.+ .++.+...+|.++++|+.|++++|.++...+.. |..+
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a-----------------------------F~~~ 147 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEA-----------------------------LADS 147 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTS-----------------------------SCTT
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhh-----------------------------hcCC
Confidence 78888888877 777666677777777777777777766222221 2223
Q ss_pred CCcCEEEccCCcc----cccCC-Ccccccccc-EEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCC
Q 003307 238 DNLEVFDASNNHL----VGAIP-SFNFVFSLR-ILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATL 311 (832)
Q Consensus 238 ~~L~~L~Ls~N~l----~~~~~-~~~~l~~L~-~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L 311 (832)
.++..+.+..+.. ..... .|..+..|+ .+.+... +.++..++... ....++
T Consensus 148 ~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~--------------------~~~~~~ 204 (329)
T 3sb4_A 148 VTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAG--------------------LQPRDI 204 (329)
T ss_dssp TCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTT--------------------CCGGGC
T ss_pred CceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcc--------------------cCcccc
Confidence 3333333322111 00111 233344444 3333221 12333322110 001122
Q ss_pred CEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCC
Q 003307 312 KKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLE 391 (832)
Q Consensus 312 ~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 391 (832)
+.+.+.++ -.......+...+.+|+.|+|++|.++.+.+..|.++.+|+.|+|.+| ++
T Consensus 205 ~~l~~~~~---------------------l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~ 262 (329)
T 3sb4_A 205 NFLTIEGK---------------------LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK 262 (329)
T ss_dssp SEEEEEEC---------------------CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred ceEEEeee---------------------ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc
Confidence 22222221 000011111122345777777777777666666777777777777766 55
Q ss_pred CCcccccCCCCCCC-EEEccCCcccccCcccccCCCCCCeEeccCCccc
Q 003307 392 GDLPAVLGTYPELK-VIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS 439 (832)
Q Consensus 392 ~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 439 (832)
...+.+|.++++|+ .+++++ .++.+.+.+|.++++|+.|++++|+++
T Consensus 263 ~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 263 TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 55556666666776 676666 555555566666666666555555544
No 138
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.54 E-value=1.5e-14 Score=153.75 Aligned_cols=87 Identities=22% Similarity=0.352 Sum_probs=70.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||+||+|+. .+|+.||||+++.. .....+.|.+|+++|++++|||||++++++.+.+. .|||||||+
T Consensus 29 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~--~yiVmEy~~ 106 (350)
T 4b9d_A 29 LQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGS--LYIVMDYCE 106 (350)
T ss_dssp EEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCT
T ss_pred eEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCE--EEEEEeCCC
Confidence 56799999999999997 48999999999643 33346779999999999999999999999998777 999999999
Q ss_pred CCCHHHHHhcCC
Q 003307 814 AQSLAVYLQGKG 825 (832)
Q Consensus 814 ~GsL~~~l~~~~ 825 (832)
+|+|+++|+.++
T Consensus 107 gg~L~~~i~~~~ 118 (350)
T 4b9d_A 107 GGDLFKRINAQK 118 (350)
T ss_dssp TCBHHHHHHHTT
T ss_pred CCcHHHHHHHcC
Confidence 999999997654
No 139
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.53 E-value=1.2e-14 Score=153.14 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=72.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC--ceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE--HEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~--~~~~lv~e~~~~ 814 (832)
.+.||+|+||+||+|++ +|+.||||+++.... ....+.+|+..+.+++|||||+++|+|...+. ...+||||||++
T Consensus 8 ~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~ 85 (303)
T 3hmm_A 8 QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEH 85 (303)
T ss_dssp EEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred EEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCC
Confidence 57899999999999998 589999999964322 12234456666778999999999999986542 137999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++|+.+ .++|+
T Consensus 86 gsL~~~l~~~-~l~~~ 100 (303)
T 3hmm_A 86 GSLFDYLNRY-TVTVE 100 (303)
T ss_dssp CBHHHHHHHC-CBCHH
T ss_pred CcHHHHHHhC-CCCHH
Confidence 9999999865 46664
No 140
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.53 E-value=1e-14 Score=152.34 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=80.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+.+. .|+|||||
T Consensus 37 ~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~--~yivmEy~ 114 (311)
T 4aw0_A 37 GKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEK--LYFGLSYA 114 (311)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE--EEEEEecC
Confidence 67899999999999997 589999999995431 2235679999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|+++|+..+.+++.
T Consensus 115 ~gG~L~~~i~~~~~l~e~ 132 (311)
T 4aw0_A 115 KNGELLKYIRKIGSFDET 132 (311)
T ss_dssp TTEEHHHHHHHHSSCCHH
T ss_pred CCCCHHHHHHHcCCCCHH
Confidence 999999999987777653
No 141
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.53 E-value=8.5e-15 Score=155.43 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.+. .|||||||++|
T Consensus 79 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~--~~ivmEy~~gg 156 (346)
T 4fih_A 79 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDE--LWVVMEFLEGG 156 (346)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEECCCTTE
T ss_pred eEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEeCCCCC
Confidence 35699999999999997 4899999999964433345668999999999999999999999998877 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|+++++.. .++|.
T Consensus 157 ~L~~~l~~~-~l~e~ 170 (346)
T 4fih_A 157 ALTDIVTHT-RMNEE 170 (346)
T ss_dssp EHHHHHHHS-CCCHH
T ss_pred cHHHHHHcC-CCCHH
Confidence 999999764 45553
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=5.5e-15 Score=142.93 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=78.5
Q ss_pred ccccCCCCCCEEEcCCCCCcccCCCCCCCC-CCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQ-SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGK 162 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 162 (832)
+.+.++.+|+.|+|++|+++.. +.+..+. +|++|+|++|.|++. ..|..+++|++|+|++|.|++..+..|.++++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3456677778888888877743 5455544 788888888877765 56777777888888888877654455577777
Q ss_pred CCEeeCcCCCCCCccc-hhhhcCCCCCEEECccCcCc
Q 003307 163 LKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 163 L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~ 198 (832)
|++|+|++|+++...+ ..+..+++|++|++++|.++
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 8888888877754322 26777777777777777776
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.1e-13 Score=132.86 Aligned_cols=86 Identities=24% Similarity=0.263 Sum_probs=43.8
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44455555555555444545555555555555555555444444455555555555555555444444555555555555
Q ss_pred ccCcCc
Q 003307 193 SNNQFS 198 (832)
Q Consensus 193 s~N~l~ 198 (832)
++|.++
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555444
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=3.9e-14 Score=135.89 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=96.3
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
++.|.|.|..+.| +++++.. + +..+ .++|+.|+|++|+|++..+ .|..+++|++|+|++|+|+++
T Consensus 4 P~~C~C~~~~l~~----------s~n~l~~-i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 69 (170)
T 3g39_A 4 PSQCSCSGTTVDC----------SGKSLAS-V-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69 (170)
T ss_dssp C-CCEEETTEEEC----------TTSCCSS-C-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred cCcCCcCCCEEEe----------CCCCcCc-c-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc
Confidence 4567777765555 4555543 3 2233 3789999999999999988 899999999999999999999
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccc
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIM 178 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 178 (832)
.+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|.++...+
T Consensus 70 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88889999999999999999998888889999999999999999986654
No 145
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.49 E-value=2.8e-14 Score=155.30 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=77.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||+++++|.+.+. .|||||||++|
T Consensus 156 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~--~~iVmEy~~gG 233 (423)
T 4fie_A 156 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDE--LWVVMEFLEGG 233 (423)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCTTE
T ss_pred eeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCE--EEEEEeCCCCC
Confidence 45799999999999997 4899999999965444445668999999999999999999999998877 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.++++.. .+++
T Consensus 234 ~L~~~i~~~-~l~e 246 (423)
T 4fie_A 234 ALTDIVTHT-RMNE 246 (423)
T ss_dssp EHHHHHHHS-CCCH
T ss_pred cHHHHHhcc-CCCH
Confidence 999998754 3554
No 146
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.49 E-value=2.6e-14 Score=151.18 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|+.||||+++.... +.+|++++++++|||||++++++.+.+. .|||||||++|
T Consensus 63 ~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~--~~ivmEy~~gg 135 (336)
T 4g3f_A 63 QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPW--VNIFMELLEGG 135 (336)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTE--EEEEECCCTTC
T ss_pred CcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEeccCCC
Confidence 45799999999999997 4899999999964322 2479999999999999999999998777 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|+++|+..+.++|.
T Consensus 136 ~L~~~l~~~~~l~e~ 150 (336)
T 4g3f_A 136 SLGQLIKQMGCLPED 150 (336)
T ss_dssp BHHHHHHHHSSCCHH
T ss_pred cHHHHHHHcCCCCHH
Confidence 999999988888774
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=3.4e-12 Score=139.77 Aligned_cols=267 Identities=9% Similarity=0.033 Sum_probs=132.3
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
..++.+.+.++ ++.... .|.++ +|+.++|..+ ++.+...+|.++ +|+.+.+.. .++.+.+.+|.++++|+.++|
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44555555432 333333 44443 4555555444 444444455552 455555553 444444455555555555555
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCC
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 248 (832)
++|+++.+....|. ..+|+.+.| ..+ ++.. ....|.++++|+.+++..|
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~l---------------------------p~~-l~~I--~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLL---------------------------PVT-LKEI--GSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEEC---------------------------CTT-CCEE--CTTTTTTCTTCCCEECCTT
T ss_pred CCCcceEechhhEe-ecccCEEEe---------------------------CCc-hhee--hhhHhhCCCCCCEEecCCC
Confidence 55555544444444 344444444 422 2211 1122556666666666654
Q ss_pred cccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCC
Q 003307 249 HLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPA 327 (832)
Q Consensus 249 ~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~ 327 (832)
++.... .|.. .+|+.+.+. +.++ .++...| ..+.+|+.+++..|.+..
T Consensus 237 -l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF-~~c~~L~~l~l~~~~~~~-------------------------- 285 (401)
T 4fdw_A 237 -VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAF-YYCPELAEVTTYGSTFND-------------------------- 285 (401)
T ss_dssp -CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTT-TTCTTCCEEEEESSCCCC--------------------------
T ss_pred -ccCcccccccc-CCccEEEeC-CCcc-EEChhHh-hCCCCCCEEEeCCccccC--------------------------
Confidence 332222 4444 566666663 3343 2332222 234444444443333220
Q ss_pred CCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEE
Q 003307 328 RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVI 407 (832)
Q Consensus 328 ~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 407 (832)
+.+.......|..+.+|+.++|. +.++.+....|.++.+|+.++|.+| ++...+.+|.++ +|+.+
T Consensus 286 ------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 286 ------------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp ------------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred ------------CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 00000111222223356666666 3355555666777777777777544 554556667777 77777
Q ss_pred EccCCcccccCcccccCCC-CCCeEeccCCcc
Q 003307 408 DLSLNHLNGFLLPSFFTST-KLTDLNLSGNNF 438 (832)
Q Consensus 408 ~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l 438 (832)
++++|.+.......|.+++ .++.|++..+.+
T Consensus 351 ~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 351 KVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 7777776666666666663 566666666544
No 148
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4.4e-14 Score=136.57 Aligned_cols=136 Identities=19% Similarity=0.144 Sum_probs=100.2
Q ss_pred CCCCCCCCCCEEECCCCCCCccCcccccCCC-CCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCC
Q 003307 107 TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLK-NLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLG 185 (832)
Q Consensus 107 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~ 185 (832)
+.+..+.+|++|+|++|.++.+ |. +..+. +|++|+|++|.|++. ..|.++++|++|+|++|+|++..+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3567789999999999999955 54 55554 999999999999975 6899999999999999999977667778999
Q ss_pred CCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCC----ccccc
Q 003307 186 SVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS----FNFVF 261 (832)
Q Consensus 186 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~l~ 261 (832)
+|++|+|++|.++. +|. +.. +..+++|+.|++++|.++...+. +..++
T Consensus 89 ~L~~L~L~~N~i~~-~~~-~~~--------------------------l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGD-LDP--------------------------LASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 140 (176)
T ss_dssp TCCEEECCSCCCCC-GGG-GGG--------------------------GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT
T ss_pred CCCEEECCCCcCCc-chh-hHh--------------------------hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC
Confidence 99999999998862 221 111 44455566666666666533322 55666
Q ss_pred cccEEEccccCCC
Q 003307 262 SLRILRLGSNQLS 274 (832)
Q Consensus 262 ~L~~L~L~~N~l~ 274 (832)
+|+.|+++.|.+.
T Consensus 141 ~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 141 QVRVLDFQKVKLK 153 (176)
T ss_dssp TCSEETTEECCHH
T ss_pred ccceeCCCcCCHH
Confidence 7777777776654
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.2e-13 Score=131.06 Aligned_cols=86 Identities=28% Similarity=0.278 Sum_probs=52.7
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 55666666666666665666666666666666666666554445566666666666666666555555666666666666
Q ss_pred ccCcCc
Q 003307 193 SNNQFS 198 (832)
Q Consensus 193 s~N~l~ 198 (832)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666555
No 150
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.46 E-value=1.7e-13 Score=143.81 Aligned_cols=92 Identities=20% Similarity=0.332 Sum_probs=74.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----------ce
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----------HE 804 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----------~~ 804 (832)
.+.||+|+||+||+|+. .+|+.||||+++.. .....+.|.+|+++|++++|||||++++++...+. ..
T Consensus 10 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~ 89 (299)
T 4g31_A 10 IQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVY 89 (299)
T ss_dssp EEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEE
T ss_pred eeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcE
Confidence 56899999999999997 48999999998643 33345679999999999999999999999865432 12
Q ss_pred EEEEEecCCCCCHHHHHhcCCCcc
Q 003307 805 KLVISNYINAQSLAVYLQGKGLVL 828 (832)
Q Consensus 805 ~~lv~e~~~~GsL~~~l~~~~~l~ 828 (832)
.++|||||++|+|.++++++..+.
T Consensus 90 l~ivmE~~~gg~L~~~l~~~~~~~ 113 (299)
T 4g31_A 90 LYIQMQLCRKENLKDWMNGRCTIE 113 (299)
T ss_dssp EEEEEECCCSCCHHHHHHTCCSGG
T ss_pred EEEEEecCCCCcHHHHHHhcCCCC
Confidence 689999999999999999876544
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.45 E-value=6.9e-12 Score=137.91 Aligned_cols=310 Identities=12% Similarity=0.033 Sum_probs=159.9
Q ss_pred ccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGK 162 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 162 (832)
.+|.++++|+.+.|..+ ++.... .|.+|++|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..+...+|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 45666677777777543 444444 6677777777777544 55455566666777766666543 33345556666554
Q ss_pred CCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCE
Q 003307 163 LKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEV 242 (832)
Q Consensus 163 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 242 (832)
++....... ......+|.++++|+.+.+..+..+ + .-+.+..+.+|+.+.+..+ ++. + ....|.++..|+.
T Consensus 142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~--I--~~~~F~~c~~L~~i~l~~~-~~~-I-~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET--L--HNGLFSGCGKLKSIKLPRN-LKI-I-RDYCFAECILLEN 212 (394)
T ss_dssp SEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE--E--CTTTTTTCTTCCBCCCCTT-CCE-E-CTTTTTTCTTCCB
T ss_pred cccccCccc--cccchhhhcccCCCcEEecCCccce--e--ccccccCCCCceEEEcCCC-ceE-e-Cchhhccccccce
Confidence 443333222 2233445666666666666544321 1 1122334455555555544 211 1 1122455555555
Q ss_pred EEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCC-ccCccCCCCCCEEEecCCee
Q 003307 243 FDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSATLKKVNLSSNKL 321 (832)
Q Consensus 243 L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~-~~~~~~~~~L~~L~L~~N~l 321 (832)
+.+..+... .........+|+.+.+..+. + .+....+ ..+..++.+.+..+...- .........++.+.+..+.+
T Consensus 213 i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f-~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 213 MEFPNSLYY-LGDFALSKTGVKNIIIPDSF-T-ELGKSVF-YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCCTTCCE-ECTTTTTTCCCCEEEECTTC-C-EECSSTT-TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE
T ss_pred eecCCCceE-eehhhcccCCCceEEECCCc-e-ecccccc-cccccceeEEcCCCcceeeccccccccccceeccCceee
Confidence 555443322 11122223345554443321 1 1111111 233444444444332210 00011122333333333222
Q ss_pred cccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCC
Q 003307 322 SGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTY 401 (832)
Q Consensus 322 ~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 401 (832)
. ...+..+.+|+.+.+.++ ++.+...+|.++.+|+.++|.++ ++.....+|.++
T Consensus 289 ~------------------------~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c 342 (394)
T 4fs7_A 289 P------------------------EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC 342 (394)
T ss_dssp C------------------------TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred c------------------------cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence 1 223344446777777654 55555667788888888888644 665556778888
Q ss_pred CCCCEEEccCCcccccCcccccCCCCCCeEeccCC
Q 003307 402 PELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGN 436 (832)
Q Consensus 402 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 436 (832)
.+|+.+++..| ++.+...+|.++.+|+.+++..+
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88888888766 66666777888888888888655
No 152
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.45 E-value=1.1e-13 Score=142.49 Aligned_cols=91 Identities=18% Similarity=0.307 Sum_probs=75.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||+||+|+. .+|+.||||+++... ....+.|.+|++++++++|||||++++++.+.+. .++|||||
T Consensus 18 ~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~--~~ivmEy~ 95 (275)
T 3hyh_A 18 VKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDE--IIMVIEYA 95 (275)
T ss_dssp EEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCE--EEEEEeCC
Confidence 56899999999999997 489999999996432 2235679999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++..++.+++.
T Consensus 96 -~g~L~~~l~~~~~l~e~ 112 (275)
T 3hyh_A 96 -GNELFDYIVQRDKMSEQ 112 (275)
T ss_dssp -CEEHHHHHHHSCSCCHH
T ss_pred -CCCHHHHHHHcCCCCHH
Confidence 68999999988877764
No 153
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.44 E-value=1.4e-13 Score=147.44 Aligned_cols=87 Identities=30% Similarity=0.423 Sum_probs=72.2
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCC-CcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKH-PNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H-~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||+||+|++. .++.||||+++... ....++|.+|+++|.+++| ||||+++|+|...+. ..+||
T Consensus 69 ~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~-~~~iV 147 (353)
T 4ase_A 69 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG-PLMVI 147 (353)
T ss_dssp EEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS-CCEEE
T ss_pred eeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCC-EEEEE
Confidence 678999999999999862 24689999996543 3345779999999999965 899999999976432 27999
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
||||++|+|.++|+..
T Consensus 148 ~Ey~~~G~L~~~L~~~ 163 (353)
T 4ase_A 148 VEFCKFGNLSTYLRSK 163 (353)
T ss_dssp EECCTTEEHHHHHHHT
T ss_pred EEcCCCCCHHHHHHhc
Confidence 9999999999999864
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=6.1e-12 Score=137.81 Aligned_cols=248 Identities=11% Similarity=0.088 Sum_probs=159.3
Q ss_pred cccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCC
Q 003307 83 FPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLG 161 (832)
Q Consensus 83 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 161 (832)
...|.+. +|+.++|..+ ++.... .|.++ +|+.++|.. .++.+.+.+|.++++|+.++|++|+++.+...+|. ..
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 3456664 7999999877 666555 78885 799999986 78888889999999999999999999987777787 68
Q ss_pred CCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcC
Q 003307 162 KLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLE 241 (832)
Q Consensus 162 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 241 (832)
+|+.+.|..+ ++.+...+|.++++|+.+++..| ++. ++ -..|.. .+|+.+.+.+ .+
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~-I~--~~aF~~-~~L~~i~lp~-~i----------------- 259 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST-IG--QEAFRE-SGITTVKLPN-GV----------------- 259 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE-EC--TTTTTT-CCCSEEEEET-TC-----------------
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC-cc--cccccc-CCccEEEeCC-Cc-----------------
Confidence 9999999854 77778889999999999999865 331 11 112222 3455555522 22
Q ss_pred EEEccCCcccccCC-CccccccccEEEccccCCCC----CCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEe
Q 003307 242 VFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSG----SLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNL 316 (832)
Q Consensus 242 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~----~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L 316 (832)
+.... .|..+++|+.+++.+|.+.. .++...| ..+.+|+.+++.. .++
T Consensus 260 ---------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF-~~c~~L~~l~l~~-~i~---------------- 312 (401)
T 4fdw_A 260 ---------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL-EGCPKLARFEIPE-SIR---------------- 312 (401)
T ss_dssp ---------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT-TTCTTCCEECCCT-TCC----------------
T ss_pred ---------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh-hCCccCCeEEeCC-ceE----------------
Confidence 22222 44444455555554444320 1222222 2233333333321 111
Q ss_pred cCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccc
Q 003307 317 SSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA 396 (832)
Q Consensus 317 ~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 396 (832)
......|..+.+|+.+.|..| ++.+...+|.++ +|+.+++++|.+....+.
T Consensus 313 ---------------------------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 313 ---------------------------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp ---------------------------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred ---------------------------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 111122222235666776443 555666778888 888888888888766667
Q ss_pred ccCCCC-CCCEEEccCCccc
Q 003307 397 VLGTYP-ELKVIDLSLNHLN 415 (832)
Q Consensus 397 ~~~~l~-~L~~L~Ls~N~l~ 415 (832)
.|.+++ +++.|++..+.+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCCSCTTCCEEEECGGGHH
T ss_pred cccCCCCCccEEEeCHHHHH
Confidence 777774 6788888877654
No 155
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.42 E-value=3.7e-14 Score=148.22 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=72.9
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||+||+|+. .+++.||||+++... ......+.+|+++|++++|||||++++++.+.+. .|+|||
T Consensus 29 ~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~--~~ivmE 106 (304)
T 3ubd_A 29 LKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGK--LYLILD 106 (304)
T ss_dssp EEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTE--EEEEEC
T ss_pred EEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCE--EEEEEE
Confidence 57899999999999985 257899999985432 1223468899999999999999999999998777 999999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
||++|+|+++|+..+.+++.
T Consensus 107 y~~gg~L~~~l~~~~~l~e~ 126 (304)
T 3ubd_A 107 FLRGGDLFTRLSKEVMFTEE 126 (304)
T ss_dssp CCTTCEEHHHHHHHCCCCHH
T ss_pred cCCCCCHHHHHHhcCCCCHH
Confidence 99999999999987777663
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=4.7e-13 Score=128.78 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=92.7
Q ss_pred EEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 68 ~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
+.++++++++. .+| ..+. ++|+.|+|++|+|++.+| .|..+++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45677777774 442 3343 899999999999999988 899999999999999999998887889999999999999
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCCCCCCccc
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIM 178 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 178 (832)
|+|++..+..|.++++|++|+|++|.+....+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99998777779999999999999999986543
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=8.2e-16 Score=151.91 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=65.1
Q ss_pred ccCCCCCCEEEcCCCCCcccCC-------CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCC
Q 003307 86 IIGLKMLCNVSVSNNQLMGNIT-------DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFG 158 (832)
Q Consensus 86 ~~~l~~L~~L~Ls~n~l~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 158 (832)
+.....++.++++.+.+.+..| .+..+++|++|+|++|.|++ +| .+..+++|++|+|++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 3445566666666666666554 24556666666666666665 34 5666666666666666666 3455555
Q ss_pred CCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCc
Q 003307 159 GLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 159 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
.+++|++|+|++|++++. | .+..+++|++|++++|+++
T Consensus 91 ~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 91 VADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECC
T ss_pred cCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCC
Confidence 556666666666666542 2 4555666666666666655
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.37 E-value=3.6e-11 Score=132.16 Aligned_cols=327 Identities=12% Similarity=0.044 Sum_probs=202.6
Q ss_pred CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 187 (832)
+|.++.+|+.+.|.. .++.+...+|.++++|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..+...+|.++..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 788899999999975 477777888999999999999765 66677788999999998887654 444555667766544
Q ss_pred CEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEE
Q 003307 188 VHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRIL 266 (832)
Q Consensus 188 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L 266 (832)
..........- .-..|..+++|+.+.+.++..+ + ....|.++.+|+.+++..+ ++.... .|..+..|+.+
T Consensus 143 ~~~~~~~~~~i-----~~~aF~~c~~L~~i~l~~~~~~--I-~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 143 EITIPEGVTVI-----GDEAFATCESLEYVSLPDSMET--L-HNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp EEECCTTCCEE-----CTTTTTTCTTCCEEECCTTCCE--E-CTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred ccccCcccccc-----chhhhcccCCCcEEecCCccce--e-ccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 43333222211 1233555677777777655321 2 2233667777777777665 332223 56666667766
Q ss_pred EccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcc
Q 003307 267 RLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDL 346 (832)
Q Consensus 267 ~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~ 346 (832)
.+..+... +.... .....|+.+.+..+. + .+..........++.+.+..+.. ...
T Consensus 214 ~~~~~~~~--i~~~~--~~~~~l~~i~ip~~~-~-------------------~i~~~~f~~~~~l~~~~~~~~~~-~i~ 268 (394)
T 4fs7_A 214 EFPNSLYY--LGDFA--LSKTGVKNIIIPDSF-T-------------------ELGKSVFYGCTDLESISIQNNKL-RIG 268 (394)
T ss_dssp CCCTTCCE--ECTTT--TTTCCCCEEEECTTC-C-------------------EECSSTTTTCSSCCEEEECCTTC-EEC
T ss_pred ecCCCceE--eehhh--cccCCCceEEECCCc-e-------------------ecccccccccccceeEEcCCCcc-eee
Confidence 66554332 12222 122345555443221 1 11111112222334444433322 122
Q ss_pred hhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCC
Q 003307 347 SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTST 426 (832)
Q Consensus 347 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 426 (832)
...+.....++.+.+..+.+ ....|..+.+|+.+.+.++ ++.....+|.++.+|+.++|..+ ++.+...+|.++.
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT 343 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred ccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence 23344444677777776654 3456888999999999865 66566788999999999999855 7777788999999
Q ss_pred CCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEE
Q 003307 427 KLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYL 488 (832)
Q Consensus 427 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 488 (832)
+|+.+++..| ++..-...+..+ .+|+.+++..+ ++ .+...|.++++|+.+
T Consensus 344 ~L~~i~lp~~-l~~I~~~aF~~C---------~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGANAFQGC---------INLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEECTTTBTTC---------TTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCEEEECcc-ccEehHHHhhCC---------CCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999877 543222233333 34999999765 33 234567777777654
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=6.9e-13 Score=143.39 Aligned_cols=112 Identities=24% Similarity=0.301 Sum_probs=89.2
Q ss_pred CCC-CCCCCccccCCCcEEEEEeCCC-CCccccCcccccCCCCCCEEEcCC-CCCcccCC-CCCCCCCCCEEECCCCCCC
Q 003307 51 DGC-PRNWFGITCTNGYVTSIMLNDM-GLVGNFSFPTIIGLKMLCNVSVSN-NQLMGNIT-DIGSIQSLEFLDLSHNLFH 126 (832)
Q Consensus 51 ~~c-~~~w~gv~C~~~~v~~l~l~~~-~l~g~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~-~~~~l~~L~~L~Ls~N~l~ 126 (832)
+.| .|.|..|.|+ ++ +|.+ + |. +..+++|+.|+|++ |.|++.++ .|+.+++|++|+|++|+|+
T Consensus 3 ~~c~~C~~~~v~~~----------~~n~l~~-i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 69 (347)
T 2ifg_A 3 DACCPHGSSGLRCT----------RDGALDS-L-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69 (347)
T ss_dssp SSSCCSSSSCEECC----------SSCCCTT-T-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC
T ss_pred CcCccccCCEEEcC----------CCCCCCc-c-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc
Confidence 456 7788777775 33 4443 4 34 88888899999986 88888887 7888999999999999998
Q ss_pred ccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc
Q 003307 127 GLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD 176 (832)
Q Consensus 127 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 176 (832)
++.|..|.+|++|++|+|++|+|++..+..|..++ |+.|+|.+|.+...
T Consensus 70 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 88888888899999999999999877666777666 88888888888754
No 160
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=8e-15 Score=144.77 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=97.4
Q ss_pred cccEEEcCCCcCCCCCcc------cccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCC
Q 003307 355 YVEDIHLSSNFLTGMVPN------QTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKL 428 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 428 (832)
.++.++++.+.+++.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++. +|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcC
Confidence 466666666666666665 77888888888888888885 56 77778888888888888874 56666667888
Q ss_pred CeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCC-hhhhcCCCCCEEeCcCCcCcccCCC
Q 003307 429 TDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL-PGISKFHNLVYLNLSNNKFEGSIPD 501 (832)
Q Consensus 429 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~ 501 (832)
+.|+|++|++++. | .+... .+|++|+|++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus 96 ~~L~L~~N~l~~l-~-~~~~l---------~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 96 EELWISYNQIASL-S-GIEKL---------VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SEEEEEEEECCCH-H-HHHHH---------HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CEEECcCCcCCcC-C-ccccC---------CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 8888888888762 3 22221 248888888888875433 4678888888888888888877665
No 161
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=141.56 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=77.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC----CceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK----EHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~----~~~~~lv~ 809 (832)
.+.||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|+++|++++|||||++++++.... ....||||
T Consensus 59 ~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivm 138 (398)
T 4b99_A 59 IETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVL 138 (398)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEE
T ss_pred EEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEE
Confidence 56899999999999997 48999999999643 2334567899999999999999999999876431 12489999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
|||+ |+|.++++..+.+++.
T Consensus 139 E~~~-g~L~~~i~~~~~l~~~ 158 (398)
T 4b99_A 139 DLME-SDLHQIIHSSQPLTLE 158 (398)
T ss_dssp ECCS-EEHHHHHTSSSCCCHH
T ss_pred eCCC-CCHHHHHHhcCCCCHH
Confidence 9996 7899999988887764
No 162
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.32 E-value=3.5e-12 Score=146.27 Aligned_cols=91 Identities=19% Similarity=0.313 Sum_probs=80.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+. .+|+.||||++........+.+.+|+++|++++|||||++++++.+.+. .++|||||++|
T Consensus 162 ~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~--~~iv~E~~~gg 239 (573)
T 3uto_A 162 HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNE--MVMIYEFMSGG 239 (573)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSE--EEEEEECCCCC
T ss_pred EEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE--EEEEEeecCCC
Confidence 56899999999999997 4899999999976655566789999999999999999999999998777 99999999999
Q ss_pred CHHHHHhcC-CCccc
Q 003307 816 SLAVYLQGK-GLVLW 829 (832)
Q Consensus 816 sL~~~l~~~-~~l~w 829 (832)
+|+++|..+ +.+++
T Consensus 240 ~L~~~i~~~~~~l~e 254 (573)
T 3uto_A 240 ELFEKVADEHNKMSE 254 (573)
T ss_dssp BHHHHHTCTTSCEEH
T ss_pred cHHHHHHHhCCCCCH
Confidence 999999754 45654
No 163
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.29 E-value=8.9e-12 Score=132.30 Aligned_cols=92 Identities=26% Similarity=0.495 Sum_probs=81.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+.. +|+.||||++........+.|.+|++++.+++|||||+++++|...+. .++||||+++|
T Consensus 15 ~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~~~ 92 (310)
T 3s95_A 15 GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKR--LNFITEYIKGG 92 (310)
T ss_dssp EEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEEECCTTC
T ss_pred cceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCe--eEEEEEecCCC
Confidence 678999999999999984 799999999876666667889999999999999999999999998776 99999999999
Q ss_pred CHHHHHhc-CCCcccc
Q 003307 816 SLAVYLQG-KGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~-~~~l~w~ 830 (832)
+|.++++. ...++|.
T Consensus 93 ~L~~~l~~~~~~~~~~ 108 (310)
T 3s95_A 93 TLRGIIKSMDSQYPWS 108 (310)
T ss_dssp BHHHHHHHCCTTSCHH
T ss_pred cHHHHHHhccCCCCHH
Confidence 99999987 4556653
No 164
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.28 E-value=8.1e-12 Score=142.44 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=75.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHH---HHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKK---EFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~---~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
..+||+|+||+||+|+.. +|+.||||+++.... .... ....++++++.++|||||++++++.+.+. .|+||
T Consensus 194 ~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~--lylVm 271 (689)
T 3v5w_A 194 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK--LSFIL 271 (689)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE--EEEEE
T ss_pred EEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCE--EEEEE
Confidence 578999999999999974 899999999953211 1122 23345677888999999999999998877 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
|||+||+|+++|+..+.+++.
T Consensus 272 Ey~~GGdL~~~l~~~~~l~E~ 292 (689)
T 3v5w_A 272 DLMNGGDLHYHLSQHGVFSEA 292 (689)
T ss_dssp CCCCSCBHHHHHHHHCCCCHH
T ss_pred ecCCCCcHHHHHHhcCCCCHH
Confidence 999999999999987777754
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=8.6e-12 Score=134.72 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=73.2
Q ss_pred EEEcCCC-CCcccCCCCCCCCCCCEEECCC-CCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 94 NVSVSNN-QLMGNITDIGSIQSLEFLDLSH-NLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 94 ~L~Ls~n-~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
.++++++ .+++.++ +..+++|++|+|++ |.|+++.+..|.+|++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577776 6776555 77777777777775 7777777777777777777777777777777777777777777777777
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+|++..+..|..++ |++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77766666565554 666666666655
No 166
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.24 E-value=1.9e-11 Score=130.31 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=78.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|+.||||+++.......+.|.+|++++++++|||||+++++|...+. .++||||+++|
T Consensus 50 ~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~~~~~ 127 (321)
T 2c30_A 50 YVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEE--LWVLMEFLQGG 127 (321)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEECCCCSC
T ss_pred cEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCE--EEEEEecCCCC
Confidence 347999999999999985 899999999976555556789999999999999999999999988776 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.+++... .++|
T Consensus 128 ~L~~~l~~~-~l~~ 140 (321)
T 2c30_A 128 ALTDIVSQV-RLNE 140 (321)
T ss_dssp BHHHHHTTC-CCCH
T ss_pred CHHHHHHhc-CCCH
Confidence 999998753 4555
No 167
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.23 E-value=2.4e-11 Score=131.48 Aligned_cols=92 Identities=22% Similarity=0.298 Sum_probs=79.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +|+.||||.++.... ...+.+.+|++++.+++|||||++++++...+. .++||
T Consensus 17 ~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~--~~lv~ 94 (361)
T 2yab_A 17 GEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD--VVLIL 94 (361)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEE
T ss_pred eeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE--EEEEE
Confidence 678999999999999974 799999999854321 135779999999999999999999999988776 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
|||++|+|.+++...+.+++.
T Consensus 95 e~~~gg~L~~~l~~~~~l~~~ 115 (361)
T 2yab_A 95 ELVSGGELFDFLAQKESLSEE 115 (361)
T ss_dssp ECCCSCBHHHHHTTCSCCBHH
T ss_pred EcCCCCcHHHHHHhcCCCCHH
Confidence 999999999999887777653
No 168
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.23 E-value=7.1e-12 Score=133.78 Aligned_cols=87 Identities=32% Similarity=0.527 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..+|+.||||++........+.|.+|++++++++|||||+++++|...+. .++||||+++|+
T Consensus 44 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~~~ 121 (321)
T 2qkw_B 44 KFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE--MILIYKYMENGN 121 (321)
T ss_dssp CCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTC--CEEEEECCTTCB
T ss_pred cceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCe--EEEEEEcCCCCc
Confidence 678999999999999988899999999876555556789999999999999999999999987776 999999999999
Q ss_pred HHHHHhcCC
Q 003307 817 LAVYLQGKG 825 (832)
Q Consensus 817 L~~~l~~~~ 825 (832)
|.++++...
T Consensus 122 L~~~l~~~~ 130 (321)
T 2qkw_B 122 LKRHLYGSD 130 (321)
T ss_dssp TGGGSSSSC
T ss_pred HHHHHhccC
Confidence 999987543
No 169
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.22 E-value=1.8e-11 Score=133.37 Aligned_cols=92 Identities=24% Similarity=0.474 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. ++..||||+++.. .....++|.+|++++++++|||||+++++|...+. .++||||
T Consensus 50 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~ 127 (373)
T 2qol_A 50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKP--VMIVTEY 127 (373)
T ss_dssp CEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS--CEEEEEC
T ss_pred eeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCc--eEEEEeC
Confidence 678999999999999863 5778999999654 33446789999999999999999999999988777 9999999
Q ss_pred CCCCCHHHHHhcCC-Ccccc
Q 003307 812 INAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w~ 830 (832)
|++|+|.++++..+ .++|.
T Consensus 128 ~~~~sL~~~l~~~~~~~~~~ 147 (373)
T 2qol_A 128 MENGSLDSFLRKHDAQFTVI 147 (373)
T ss_dssp CTTCBHHHHHHTTTTCSCHH
T ss_pred CCCCcHHHHHHhCCCCCCHH
Confidence 99999999998654 46653
No 170
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.22 E-value=2.5e-11 Score=129.73 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++||||+++++++...+. .++|||||+
T Consensus 20 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~--~~lv~e~~~ 97 (328)
T 3fe3_A 20 LKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKT--LYLIMEYAS 97 (328)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCT
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCE--EEEEEECCC
Confidence 67899999999999997 58999999998543 33345678999999999999999999999988776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.+++...+.+++
T Consensus 98 ~~~L~~~l~~~~~l~~ 113 (328)
T 3fe3_A 98 GGEVFDYLVAHGRMKE 113 (328)
T ss_dssp TCBHHHHHHHHCCCCH
T ss_pred CCcHHHHHHHcCCCCH
Confidence 9999999987766654
No 171
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=131.09 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=78.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|++++.+++|||||++++++...+. .++|||||++
T Consensus 15 ~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~--~~lv~E~~~g 92 (347)
T 3zgw_A 15 HETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANK--IFMVLEYCPG 92 (347)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEEECCTT
T ss_pred EEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCE--EEEEEeCCCC
Confidence 67899999999999997 589999999985432 2234568999999999999999999999988776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.+++...+.+++.
T Consensus 93 g~L~~~l~~~~~l~~~ 108 (347)
T 3zgw_A 93 GELFDYIISQDRLSEE 108 (347)
T ss_dssp CBHHHHHHHHSSCCHH
T ss_pred CCHHHHHHHcCCCCHH
Confidence 9999999877766653
No 172
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.20 E-value=4.1e-11 Score=126.25 Aligned_cols=86 Identities=24% Similarity=0.346 Sum_probs=76.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+. .+|+.||||++........+.+.+|+.++++++|||||++++++...+. .++|||||++|
T Consensus 25 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~~~ 102 (297)
T 3fxz_A 25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDE--LWVVMEYLAGG 102 (297)
T ss_dssp CEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCTTC
T ss_pred eeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCE--EEEEEECCCCC
Confidence 67899999999999996 5899999999865444446779999999999999999999999988777 99999999999
Q ss_pred CHHHHHhcC
Q 003307 816 SLAVYLQGK 824 (832)
Q Consensus 816 sL~~~l~~~ 824 (832)
+|.+++...
T Consensus 103 ~L~~~~~~~ 111 (297)
T 3fxz_A 103 SLTDVVTET 111 (297)
T ss_dssp BHHHHHHHS
T ss_pred CHHHHHhhc
Confidence 999999765
No 173
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.19 E-value=4.4e-11 Score=127.82 Aligned_cols=92 Identities=22% Similarity=0.318 Sum_probs=79.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +|+.||||.++.... ...+.+.+|++++.+++|||||++++++...+. .++||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~ 93 (326)
T 2y0a_A 16 GEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD--VILIL 93 (326)
T ss_dssp EEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEE
T ss_pred ceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE--EEEEE
Confidence 678999999999999974 799999999854321 135779999999999999999999999988776 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+++|+|.+++...+.+++.
T Consensus 94 e~~~~~~L~~~l~~~~~~~~~ 114 (326)
T 2y0a_A 94 ELVAGGELFDFLAEKESLTEE 114 (326)
T ss_dssp ECCCSCBHHHHHTTSSCCBHH
T ss_pred EcCCCCCHHHHHHhcCCcCHH
Confidence 999999999999887777653
No 174
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.19 E-value=3.8e-11 Score=125.12 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=80.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+.. ++..||+|++........+.|.+|++++.+++||||++++++|...+. .++||||+++|
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 91 (277)
T 3f3z_A 14 ENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTD--IYLVMELCTGG 91 (277)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEEECCCSC
T ss_pred eeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCe--EEEEEeccCCC
Confidence 678999999999999985 688999999865444456789999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|.+++...+.++|.
T Consensus 92 ~L~~~~~~~~~~~~~ 106 (277)
T 3f3z_A 92 ELFERVVHKRVFRES 106 (277)
T ss_dssp BHHHHHHHHCSCCHH
T ss_pred cHHHHHHHcCCCCHH
Confidence 999999877766653
No 175
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.18 E-value=3.1e-11 Score=131.41 Aligned_cols=91 Identities=20% Similarity=0.316 Sum_probs=74.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.++||+|+||.||+|+. .+|+.||||+++.......++|.+|++++.+++|||||+++++|...+. .++|||||++|
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~--~~lv~E~~~~~ 171 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKND--IVLVMEYVDGG 171 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEEECCTTC
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE--EEEEEeCCCCC
Confidence 46799999999999997 4799999999976665567789999999999999999999999998776 99999999999
Q ss_pred CHHHHHhcCC-Cccc
Q 003307 816 SLAVYLQGKG-LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~-~l~w 829 (832)
+|.+++...+ .++|
T Consensus 172 ~L~~~l~~~~~~l~~ 186 (373)
T 2x4f_A 172 ELFDRIIDESYNLTE 186 (373)
T ss_dssp EEHHHHHHTGGGCCH
T ss_pred cHHHHHHhcCCCCCH
Confidence 9999987543 4554
No 176
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.18 E-value=2.6e-11 Score=127.70 Aligned_cols=93 Identities=24% Similarity=0.445 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|++ .+|+.||||++........+.|.+|++++.+++||||++++++|...+....++||||
T Consensus 15 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~ 94 (295)
T 3ugc_A 15 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEY 94 (295)
T ss_dssp EEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEEC
T ss_pred hheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEe
Confidence 67899999999999984 3789999999976666666789999999999999999999999865432237999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++..+ .++|
T Consensus 95 ~~~~~L~~~l~~~~~~~~~ 113 (295)
T 3ugc_A 95 LPYGSLRDYLQKHKERIDH 113 (295)
T ss_dssp CTTCBHHHHHHHCGGGCCH
T ss_pred CCCCCHHHHHHhcccccCH
Confidence 99999999998654 3554
No 177
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.18 E-value=5.5e-11 Score=125.05 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.|.+|++++.+++||||+++++++...+. .++||||+
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~ 93 (294)
T 4eqm_A 16 VDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDC--YYLVMEYI 93 (294)
T ss_dssp EEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCe--EEEEEeCC
Confidence 578999999999999974 7999999988432 23345679999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.++|.
T Consensus 94 ~g~~L~~~l~~~~~~~~~ 111 (294)
T 4eqm_A 94 EGPTLSEYIESHGPLSVD 111 (294)
T ss_dssp CSCBHHHHHHHHCSCCHH
T ss_pred CCCCHHHHHHhcCCCCHH
Confidence 999999999877766653
No 178
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.18 E-value=4.7e-11 Score=127.55 Aligned_cols=91 Identities=23% Similarity=0.495 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. .+..||||+++.. .....+.|.+|++++.+++|||||+++++|...+. .++||||
T Consensus 54 ~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~ 131 (325)
T 3kul_A 54 EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRL--AMIVTEY 131 (325)
T ss_dssp EEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGC--CEEEEEC
T ss_pred eeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCc--cEEEeeC
Confidence 678999999999999973 3446999999654 34446789999999999999999999999987766 8999999
Q ss_pred CCCCCHHHHHhcC-CCccc
Q 003307 812 INAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w 829 (832)
|++|+|.++++.. +.++|
T Consensus 132 ~~~~~L~~~l~~~~~~~~~ 150 (325)
T 3kul_A 132 MENGSLDTFLRTHDGQFTI 150 (325)
T ss_dssp CTTCBHHHHHHTTTTCSCH
T ss_pred CCCCcHHHHHHhcccCCCH
Confidence 9999999999754 45554
No 179
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=2.7e-13 Score=147.13 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=51.3
Q ss_pred CCCCEEEcCCCCCcccCC-CCC-----CCCCCCEEECCCCCCCccCcccc-cCCCCCCEEEcccccccccCCCCC-----
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIG-----SIQSLEFLDLSHNLFHGLIPSGI-VSLKNLMLLNISSNSFEGTFPSGF----- 157 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~-----~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~----- 157 (832)
+.|+.|+|++|.++.... .+. ..++|++|+|++|.|+......+ ..+++|++|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 455666666666554322 111 12456666666666553322222 223455555555555543322222
Q ss_pred CCCCCCCEeeCcCCCCCCc----cchhhhcCCCCCEEECccCcCc
Q 003307 158 GGLGKLKYLDLRANRFGGD----IMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 158 ~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 2344555555555555432 2223344555555555555544
No 180
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.18 E-value=4.1e-11 Score=128.41 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=78.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||+||+|+.. +|+.||||+++.. .....+.+.+|++++.+++||||+++++++...+. .++|||||
T Consensus 10 ~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~--~~lv~E~~ 87 (337)
T 1o6l_A 10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDR--LCFVMEYA 87 (337)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCE--EEEEEeCC
Confidence 678999999999999974 7999999998543 12235678999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 88 ~gg~L~~~l~~~~~~~~ 104 (337)
T 1o6l_A 88 NGGELFFHLSRERVFTE 104 (337)
T ss_dssp TTCBHHHHHHHHSCCCH
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 99999999987766665
No 181
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.18 E-value=2.4e-11 Score=134.64 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.++||+|+||+||+|+.. +|+.||||+++.... ...+.+.+|++++.+++|||||+++++|.+.+. .++|||||
T Consensus 79 ~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~--~~lV~Ey~ 156 (437)
T 4aw2_A 79 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNN--LYLVMDYY 156 (437)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCE--EEEEEecC
Confidence 678999999999999985 689999999854211 112348899999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhc-CCCcccc
Q 003307 813 NAQSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w~ 830 (832)
++|+|.++++. .+.+++.
T Consensus 157 ~gg~L~~~l~~~~~~l~e~ 175 (437)
T 4aw2_A 157 VGGDLLTLLSKFEDRLPEE 175 (437)
T ss_dssp TTCBHHHHHHTTTTCCCHH
T ss_pred CCCcHHHHHHHccCCCCHH
Confidence 99999999987 4556653
No 182
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.18 E-value=6.4e-11 Score=128.44 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=79.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++|||||+++++|...+. .++|||||+
T Consensus 34 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~--~~lv~e~~~ 111 (362)
T 2bdw_A 34 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESF--HYLVFDLVT 111 (362)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCC
T ss_pred eeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE--EEEEEecCC
Confidence 678999999999999974 7999999998543 23345678999999999999999999999998776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++..++.+++.
T Consensus 112 gg~L~~~l~~~~~~~~~ 128 (362)
T 2bdw_A 112 GGELFEDIVAREFYSEA 128 (362)
T ss_dssp SCBHHHHHTTCSCCCHH
T ss_pred CCCHHHHHHHcCCCCHH
Confidence 99999999887766653
No 183
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.18 E-value=2.4e-11 Score=129.90 Aligned_cols=97 Identities=34% Similarity=0.609 Sum_probs=79.3
Q ss_pred cchhhhcccc-----cCeeeeccCceEEEEEECCCCEEEEEEeccCCh-hhHHHHHHHHHHHhcCCCCcceeeeeEEECC
Q 003307 727 FTAEELSHAP-----AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWGP 800 (832)
Q Consensus 727 ~~~~~l~~~~-----~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~ 800 (832)
|+.+++..+. .+.||+|+||.||+|+..+|+.||||++..... .....|.+|++++.+++||||++++++|...
T Consensus 20 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~ 99 (326)
T 3uim_A 20 FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP 99 (326)
T ss_dssp CCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCS
T ss_pred ecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecC
Confidence 4555554432 568999999999999988899999999865322 2234689999999999999999999999887
Q ss_pred CCceEEEEEecCCCCCHHHHHhcCC
Q 003307 801 KEHEKLVISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 801 ~~~~~~lv~e~~~~GsL~~~l~~~~ 825 (832)
+. .++|||||++|+|.++++...
T Consensus 100 ~~--~~lv~e~~~~~~L~~~l~~~~ 122 (326)
T 3uim_A 100 TE--RLLVYPYMANGSVASCLRERP 122 (326)
T ss_dssp SC--CEEEEECCTTCBHHHHHHCCS
T ss_pred Cc--eEEEEEeccCCCHHHHHHhcc
Confidence 77 899999999999999998654
No 184
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.17 E-value=8e-11 Score=122.04 Aligned_cols=90 Identities=22% Similarity=0.353 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..++..||||++..... ..++|.+|++++.+++||||+++++++...+. .++||||+++|+
T Consensus 15 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 91 (269)
T 4hcu_A 15 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVFEFMEHGC 91 (269)
T ss_dssp EEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--EEEEEECCTTCB
T ss_pred eheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCc--eEEEEEeCCCCc
Confidence 568999999999999998888999999965432 34679999999999999999999999988777 999999999999
Q ss_pred HHHHHhcCC-Cccc
Q 003307 817 LAVYLQGKG-LVLW 829 (832)
Q Consensus 817 L~~~l~~~~-~l~w 829 (832)
|.++++... .+++
T Consensus 92 L~~~l~~~~~~~~~ 105 (269)
T 4hcu_A 92 LSDYLRTQRGLFAA 105 (269)
T ss_dssp HHHHHHTTTTCCCH
T ss_pred HHHHHHhcCcccCH
Confidence 999997643 3554
No 185
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.17 E-value=5.2e-11 Score=126.69 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=79.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
+++||+|+||.||+|+. .+|+.||||++........+.+.+|++++.++ +||||+++++++...+. .++|||||++
T Consensus 18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 95 (316)
T 2ac3_A 18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDR--FYLVFEKMRG 95 (316)
T ss_dssp CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECCTT
T ss_pred CceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCE--EEEEEEcCCC
Confidence 46799999999999996 48999999999655444567899999999985 79999999999988776 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.++++..+.+++
T Consensus 96 ~~L~~~l~~~~~~~~ 110 (316)
T 2ac3_A 96 GSILSHIHKRRHFNE 110 (316)
T ss_dssp CBHHHHHHHHSSCCH
T ss_pred CcHHHHHhccCCCCH
Confidence 999999987766665
No 186
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.17 E-value=6.3e-11 Score=125.52 Aligned_cols=86 Identities=35% Similarity=0.485 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. +|..||||++... .....++|.+|++++.+++|||||++++++...+. .++|||||++
T Consensus 42 ~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~~ 118 (309)
T 3p86_A 42 KEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN--LSIVTEYLSR 118 (309)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC--CEEEEECCTT
T ss_pred eeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc--eEEEEecCCC
Confidence 57899999999999987 6889999998543 23345679999999999999999999999988777 9999999999
Q ss_pred CCHHHHHhcCC
Q 003307 815 QSLAVYLQGKG 825 (832)
Q Consensus 815 GsL~~~l~~~~ 825 (832)
|+|.++++..+
T Consensus 119 ~~L~~~l~~~~ 129 (309)
T 3p86_A 119 GSLYRLLHKSG 129 (309)
T ss_dssp CBHHHHHHSTT
T ss_pred CcHHHHHhhcC
Confidence 99999998765
No 187
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.17 E-value=5.8e-11 Score=126.22 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=79.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||+++... ....+.+.+|+.++..++|||||++++++.+.+. .++||||+
T Consensus 11 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~--~~lv~e~~ 88 (318)
T 1fot_A 11 LRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQ--IFMIMDYI 88 (318)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCE--EEEEEeCC
Confidence 678999999999999974 89999999985431 1234668899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.+++.
T Consensus 89 ~gg~L~~~l~~~~~~~~~ 106 (318)
T 1fot_A 89 EGGELFSLLRKSQRFPNP 106 (318)
T ss_dssp CSCBHHHHHHHTSSCCHH
T ss_pred CCCCHHHHHHHcCCCCHH
Confidence 999999999987776653
No 188
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.17 E-value=8.2e-11 Score=125.62 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=78.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
+..||+|+||.||+|+.. +|+.||||++... ....+.+|++++.+++ |||||++++++.+... .++|||||++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~--~~lv~e~~~~ 90 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLH--TFLVMELLNG 90 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEECCCCS
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCE--EEEEEEccCC
Confidence 578999999999999984 7999999998543 3467889999999997 9999999999998776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++++..+.+++.
T Consensus 91 ~~L~~~l~~~~~~~~~ 106 (325)
T 3kn6_A 91 GELFERIKKKKHFSET 106 (325)
T ss_dssp CBHHHHHHHCSCCCHH
T ss_pred CcHHHHHHhcCCCCHH
Confidence 9999999988777663
No 189
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.16 E-value=8.1e-11 Score=128.56 Aligned_cols=91 Identities=15% Similarity=0.288 Sum_probs=79.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+.. +|+.||+|.+..........+.+|++++.+++|||||++++++...+. .++|||||++|
T Consensus 56 ~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~--~~lv~E~~~gg 133 (387)
T 1kob_A 56 LEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYE--MVLILEFLSGG 133 (387)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSE--EEEEEECCCCC
T ss_pred EEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCE--EEEEEEcCCCC
Confidence 568999999999999974 799999999976555556789999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCC-Cccc
Q 003307 816 SLAVYLQGKG-LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~-~l~w 829 (832)
+|.+++.... .+++
T Consensus 134 ~L~~~l~~~~~~l~~ 148 (387)
T 1kob_A 134 ELFDRIAAEDYKMSE 148 (387)
T ss_dssp BHHHHTTCTTCCBCH
T ss_pred cHHHHHHhhcCCCCH
Confidence 9999997654 5655
No 190
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.16 E-value=5.3e-11 Score=124.78 Aligned_cols=91 Identities=18% Similarity=0.292 Sum_probs=78.3
Q ss_pred cCeeeeccCceEEEEEEC-CC-------CEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SG-------SILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g-------~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+.. +| ..||+|++........+.|.+|++++++++|||||+++++|...+. .++|
T Consensus 13 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv 90 (289)
T 4fvq_A 13 NESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE--NILV 90 (289)
T ss_dssp EEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC--CEEE
T ss_pred eeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC--CEEE
Confidence 678999999999999863 44 5799999976555567889999999999999999999999988777 8999
Q ss_pred EecCCCCCHHHHHhcCCC-ccc
Q 003307 809 SNYINAQSLAVYLQGKGL-VLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~-l~w 829 (832)
|||+++|+|.++++..+. +++
T Consensus 91 ~e~~~~~~L~~~l~~~~~~~~~ 112 (289)
T 4fvq_A 91 QEFVKFGSLDTYLKKNKNCINI 112 (289)
T ss_dssp EECCTTCBHHHHHHHTGGGCCH
T ss_pred EECCCCCCHHHHHHhCCCCCCH
Confidence 999999999999987653 544
No 191
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.16 E-value=4.7e-11 Score=128.85 Aligned_cols=90 Identities=21% Similarity=0.318 Sum_probs=72.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +++.||||+++... ..+.+.+|++++.+++|||||+++++|...+. .++||||+++|
T Consensus 58 ~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~~~~~ 133 (349)
T 2w4o_A 58 ESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTE--ISLVLELVTGG 133 (349)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCCSC
T ss_pred eeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCe--EEEEEEeCCCC
Confidence 578999999999999985 78999999996532 34668899999999999999999999988776 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|.+++..++.+++.
T Consensus 134 ~L~~~l~~~~~~~~~ 148 (349)
T 2w4o_A 134 ELFDRIVEKGYYSER 148 (349)
T ss_dssp BHHHHHTTCSSCCHH
T ss_pred CHHHHHHhcCCCCHH
Confidence 999999887776653
No 192
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.16 E-value=6.1e-11 Score=122.91 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. |..||||+++.. .....+.|.+|++++++++||||++++++|...+....++||||+++
T Consensus 15 ~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 93 (271)
T 3kmu_A 15 LTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPY 93 (271)
T ss_dssp EEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTT
T ss_pred HHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCC
Confidence 578999999999999984 899999998643 33445779999999999999999999999987733338999999999
Q ss_pred CCHHHHHhcCCC--ccc
Q 003307 815 QSLAVYLQGKGL--VLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~--l~w 829 (832)
|+|.++++.... ++|
T Consensus 94 ~~L~~~l~~~~~~~~~~ 110 (271)
T 3kmu_A 94 GSLYNVLHEGTNFVVDQ 110 (271)
T ss_dssp CBHHHHHHSCSSCCCCH
T ss_pred CcHHHHHhhcccCCCCH
Confidence 999999987653 555
No 193
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.15 E-value=8.6e-11 Score=125.20 Aligned_cols=89 Identities=18% Similarity=0.317 Sum_probs=76.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.++||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++.+++|||||++++++........++||||+++
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 93 (319)
T 4euu_A 14 SDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPC 93 (319)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTT
T ss_pred EEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCC
Confidence 678999999999999985 69999999986432 2345778999999999999999999999987664348999999999
Q ss_pred CCHHHHHhcCC
Q 003307 815 QSLAVYLQGKG 825 (832)
Q Consensus 815 GsL~~~l~~~~ 825 (832)
|+|.+++....
T Consensus 94 ~~L~~~l~~~~ 104 (319)
T 4euu_A 94 GSLYTVLEEPS 104 (319)
T ss_dssp CBHHHHHHSGG
T ss_pred CCHHHHHHHhc
Confidence 99999998644
No 194
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.15 E-value=9.3e-11 Score=124.93 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+.. +|+.||+|.+.... .....+.+|++++.+++|||||++++++...+. .++|||||++|
T Consensus 10 ~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~--~~lv~e~~~g~ 86 (321)
T 1tki_A 10 AEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEE--LVMIFEFISGL 86 (321)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTE--EEEEECCCCCC
T ss_pred eeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCE--EEEEEEeCCCC
Confidence 678999999999999974 78999999986443 345678999999999999999999999988776 99999999999
Q ss_pred CHHHHHhcCC-Cccc
Q 003307 816 SLAVYLQGKG-LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~-~l~w 829 (832)
+|.+++...+ .+++
T Consensus 87 ~L~~~l~~~~~~~~~ 101 (321)
T 1tki_A 87 DIFERINTSAFELNE 101 (321)
T ss_dssp BHHHHHTSSSCCCCH
T ss_pred CHHHHHHhcCCCCCH
Confidence 9999998654 4554
No 195
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.15 E-value=5.4e-11 Score=128.23 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=70.7
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||+||+|+. .+++.||||++.... ....+.+|+++|.++ +|||||++++++.+.+. .++||||
T Consensus 26 ~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~--~~lvmE~ 101 (361)
T 4f9c_A 26 EDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH--VVIAMPY 101 (361)
T ss_dssp EEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE--EEEEEEC
T ss_pred EEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCE--EEEEEeC
Confidence 56899999999999975 257889999985433 345688999999998 69999999999988777 9999999
Q ss_pred CCCCCHHHHHh
Q 003307 812 INAQSLAVYLQ 822 (832)
Q Consensus 812 ~~~GsL~~~l~ 822 (832)
|++|+|.++++
T Consensus 102 ~~g~~L~~~~~ 112 (361)
T 4f9c_A 102 LEHESFLDILN 112 (361)
T ss_dssp CCCCCHHHHHT
T ss_pred CCcccHHHHHc
Confidence 99999999984
No 196
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.15 E-value=4.2e-11 Score=130.82 Aligned_cols=91 Identities=25% Similarity=0.440 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+.. +|+.||||.++... ....++|.+|++++++++|||||+++|+|...+. .++|||||++
T Consensus 119 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~~~ 196 (377)
T 3cbl_A 119 GEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP--IYIVMELVQG 196 (377)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSS--CEEEEECCTT
T ss_pred eeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCC--cEEEEEcCCC
Confidence 678999999999999985 89999999986542 3334579999999999999999999999987777 8999999999
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.++++..+ .+++
T Consensus 197 g~L~~~l~~~~~~~~~ 212 (377)
T 3cbl_A 197 GDFLTFLRTEGARLRV 212 (377)
T ss_dssp CBHHHHHHHHGGGCCH
T ss_pred CCHHHHHHhcCCCCCH
Confidence 99999998643 3544
No 197
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.15 E-value=9.5e-11 Score=126.12 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=78.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. +|+.||||+++.. .....+.+.+|.+++.++ +|||||++++++...+. .++||||
T Consensus 14 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~--~~lv~e~ 91 (345)
T 3a8x_A 14 LRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESR--LFFVIEY 91 (345)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEECC
T ss_pred EEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCE--EEEEEeC
Confidence 678999999999999985 7899999999643 223356688999999987 89999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.+++...+.+++.
T Consensus 92 ~~gg~L~~~l~~~~~l~~~ 110 (345)
T 3a8x_A 92 VNGGDLMFHMQRQRKLPEE 110 (345)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999877666653
No 198
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.15 E-value=7.9e-11 Score=122.00 Aligned_cols=90 Identities=23% Similarity=0.352 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..++..||||+++.... ..+++.+|++++.+++||||++++++|..... .++||||+++|+
T Consensus 13 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 89 (268)
T 3sxs_A 13 LKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYP--IYIVTEYISNGC 89 (268)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--EEEEEECCTTCB
T ss_pred eeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCc--eEEEEEccCCCc
Confidence 578999999999999998888999999965432 35679999999999999999999999987777 999999999999
Q ss_pred HHHHHhcCC-Cccc
Q 003307 817 LAVYLQGKG-LVLW 829 (832)
Q Consensus 817 L~~~l~~~~-~l~w 829 (832)
|.++++..+ .++|
T Consensus 90 L~~~l~~~~~~~~~ 103 (268)
T 3sxs_A 90 LLNYLRSHGKGLEP 103 (268)
T ss_dssp HHHHHHHHGGGCCH
T ss_pred HHHHHHHcCCCCCH
Confidence 999997643 3544
No 199
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.14 E-value=1.3e-10 Score=123.13 Aligned_cols=90 Identities=26% Similarity=0.413 Sum_probs=76.3
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccC----ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREG----IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~----~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+.||+|+||.||+|+. +|+.||||++... .....+.|.+|++++.+++||||+++++++...+. .++||||++
T Consensus 37 ~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 113 (307)
T 2nru_A 37 NKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDD--LCLVYVYMP 113 (307)
T ss_dssp CEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEEECCT
T ss_pred CccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCc--eEEEEEecC
Confidence 6899999999999997 6899999998542 22345779999999999999999999999988777 999999999
Q ss_pred CCCHHHHHhc---CCCcccc
Q 003307 814 AQSLAVYLQG---KGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~---~~~l~w~ 830 (832)
+|+|.+++.. ...++|.
T Consensus 114 ~~~L~~~l~~~~~~~~~~~~ 133 (307)
T 2nru_A 114 NGSLLDRLSCLDGTPPLSWH 133 (307)
T ss_dssp TCBHHHHHHTGGGCCCCCHH
T ss_pred CCcHHHHHHhccCCCCCCHH
Confidence 9999999973 3346653
No 200
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.14 E-value=6.3e-11 Score=126.70 Aligned_cols=91 Identities=24% Similarity=0.410 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+|+.||||+++... ......+.+|++++.+++|||||++++++...+. .++|
T Consensus 22 ~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv 99 (327)
T 3a62_A 22 LRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK--LYLI 99 (327)
T ss_dssp EEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC--EEEE
T ss_pred EEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE--EEEE
Confidence 67899999999999986 478999999996532 2234568899999999999999999999998777 9999
Q ss_pred EecCCCCCHHHHHhcCCCccc
Q 003307 809 SNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~l~w 829 (832)
||||++|+|.+++...+.+++
T Consensus 100 ~e~~~~~~L~~~l~~~~~~~~ 120 (327)
T 3a62_A 100 LEYLSGGELFMQLEREGIFME 120 (327)
T ss_dssp EECCTTEEHHHHHHHHSSCCH
T ss_pred EeCCCCCcHHHHHHhCCCCCH
Confidence 999999999999987666554
No 201
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.14 E-value=7.6e-11 Score=124.66 Aligned_cols=91 Identities=20% Similarity=0.343 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|+.||||.++.......+.+.+|++++.+++||||+++++++...+. .++||||+++|
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 91 (304)
T 2jam_A 14 MEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTH--YYLVMQLVSGG 91 (304)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCCSC
T ss_pred eeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCE--EEEEEEcCCCc
Confidence 678999999999999974 899999999975544445678999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.+++...+.+++
T Consensus 92 ~L~~~l~~~~~~~~ 105 (304)
T 2jam_A 92 ELFDRILERGVYTE 105 (304)
T ss_dssp BHHHHHHHHSCCCH
T ss_pred cHHHHHHHcCCCCH
Confidence 99999987666654
No 202
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.14 E-value=8.6e-11 Score=122.81 Aligned_cols=90 Identities=23% Similarity=0.343 Sum_probs=75.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|...++..||||+++.... ..++|.+|++++.+++||||++++++|...+. .++||||+++|+
T Consensus 29 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 105 (283)
T 3gen_A 29 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRP--IFIITEYMANGC 105 (283)
T ss_dssp EEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--EEEEECCCTTCB
T ss_pred HhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCC--eEEEEeccCCCc
Confidence 578999999999999998888999999965432 34679999999999999999999999987777 999999999999
Q ss_pred HHHHHhc-CCCccc
Q 003307 817 LAVYLQG-KGLVLW 829 (832)
Q Consensus 817 L~~~l~~-~~~l~w 829 (832)
|.++++. +..+++
T Consensus 106 L~~~l~~~~~~~~~ 119 (283)
T 3gen_A 106 LLNYLREMRHRFQT 119 (283)
T ss_dssp HHHHHHCGGGCCCH
T ss_pred HHHHHHHhccCCCH
Confidence 9999976 344554
No 203
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.14 E-value=1.4e-10 Score=124.24 Aligned_cols=90 Identities=19% Similarity=0.315 Sum_probs=74.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC------------
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE------------ 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~------------ 802 (832)
.+.||+|+||.||+|+.. +|+.||||+++.. .....+.+.+|++++++++|||||+++++|...+.
T Consensus 11 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~ 90 (332)
T 3qd2_B 11 IQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWL 90 (332)
T ss_dssp EEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC---
T ss_pred eeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhh
Confidence 578999999999999985 8999999998643 23346789999999999999999999999865431
Q ss_pred -------------------------------------------ceEEEEEecCCCCCHHHHHhcCCC
Q 003307 803 -------------------------------------------HEKLVISNYINAQSLAVYLQGKGL 826 (832)
Q Consensus 803 -------------------------------------------~~~~lv~e~~~~GsL~~~l~~~~~ 826 (832)
...++|||||++|+|.++++....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~ 157 (332)
T 3qd2_B 91 KDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS 157 (332)
T ss_dssp -----------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS
T ss_pred ccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC
Confidence 127999999999999999987654
No 204
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.14 E-value=7.1e-11 Score=128.05 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=78.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|+.||||++..... ..+.+.+|+.++++++|||||++++++...+. .++|||||++|
T Consensus 25 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~~~~ 101 (361)
T 3uc3_A 25 VKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTH--LAIIMEYASGG 101 (361)
T ss_dssp EEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEEECCCSC
T ss_pred EEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCE--EEEEEEeCCCC
Confidence 678999999999999985 899999999965432 23668899999999999999999999998776 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|.+++...+.+++.
T Consensus 102 ~L~~~l~~~~~~~~~ 116 (361)
T 3uc3_A 102 ELYERICNAGRFSED 116 (361)
T ss_dssp BHHHHHHHHSSCCHH
T ss_pred CHHHHHHhcCCCCHH
Confidence 999999876666653
No 205
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.14 E-value=7.8e-11 Score=128.30 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++.+++|||||+++++|...+. .++|||||
T Consensus 20 ~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~--~~lv~e~~ 97 (384)
T 4fr4_A 20 LRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEED--MFMVVDLL 97 (384)
T ss_dssp EEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE--EEEEEecC
Confidence 678999999999999974 78999999985421 2234678999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.+++.
T Consensus 98 ~gg~L~~~l~~~~~l~~~ 115 (384)
T 4fr4_A 98 LGGDLRYHLQQNVHFKEE 115 (384)
T ss_dssp TTEEHHHHHHTTCCCCHH
T ss_pred CCCcHHHHHHhcCCCCHH
Confidence 999999999987777653
No 206
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.13 E-value=8.7e-11 Score=127.84 Aligned_cols=87 Identities=25% Similarity=0.418 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEE--------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL--------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
.+.||+|+||.||+|+. .++..||||+++.. .....+.|.+|++++.++ +|||||+++++|...+. .+
T Consensus 86 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~--~~ 163 (370)
T 2psq_A 86 GKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP--LY 163 (370)
T ss_dssp EEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSS--CE
T ss_pred eeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCC--EE
Confidence 67899999999999985 24567999999654 333456799999999999 89999999999988777 99
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 003307 807 VISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~ 825 (832)
+||||+++|+|.++++..+
T Consensus 164 lv~e~~~~g~L~~~l~~~~ 182 (370)
T 2psq_A 164 VIVEYASKGNLREYLRARR 182 (370)
T ss_dssp EEEECCTTCBHHHHHHHTC
T ss_pred EEEEcCCCCCHHHHHHhhC
Confidence 9999999999999998654
No 207
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.13 E-value=1.7e-10 Score=121.31 Aligned_cols=92 Identities=11% Similarity=0.200 Sum_probs=79.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||+|.+... .....+.+.+|++++++++||||+++++++...+. .++||||+
T Consensus 20 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~ 97 (294)
T 2rku_A 20 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDF--VFVVLELC 97 (294)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCE--EEEEEecC
Confidence 678999999999999985 7899999998543 23345679999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.++|.
T Consensus 98 ~~~~L~~~~~~~~~~~~~ 115 (294)
T 2rku_A 98 RRRSLLELHKRRKALTEP 115 (294)
T ss_dssp TTCBHHHHHHHHCSCCHH
T ss_pred CCCCHHHHHHhcCCCCHH
Confidence 999999999876666653
No 208
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.13 E-value=1.3e-10 Score=124.14 Aligned_cols=93 Identities=20% Similarity=0.407 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|++ .+|+.||||++........+.|.+|++++.+++||||+++++++...+....++||||
T Consensus 28 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~ 107 (327)
T 3lxl_A 28 ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEY 107 (327)
T ss_dssp EEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEEC
T ss_pred hhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEee
Confidence 67899999999999984 4788999999976666666789999999999999999999999986554458999999
Q ss_pred CCCCCHHHHHhcC-CCccc
Q 003307 812 INAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w 829 (832)
+++|+|.+++... ..++|
T Consensus 108 ~~~~~L~~~l~~~~~~~~~ 126 (327)
T 3lxl_A 108 LPSGCLRDFLQRHRARLDA 126 (327)
T ss_dssp CTTCBHHHHHHHHGGGCCH
T ss_pred cCCCCHHHHHHhcccCCCH
Confidence 9999999999763 34554
No 209
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.13 E-value=3.9e-11 Score=128.05 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++.+++|||||++++++...+. .++|||||++
T Consensus 12 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~--~~lv~e~~~~ 89 (323)
T 3tki_A 12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNI--QYLFLEYCSG 89 (323)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEEECCTT
T ss_pred eeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCe--EEEEEEcCCC
Confidence 678999999999999975 89999999985432 2234668999999999999999999999997776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++++....+++.
T Consensus 90 ~~L~~~l~~~~~~~~~ 105 (323)
T 3tki_A 90 GELFDRIEPDIGMPEP 105 (323)
T ss_dssp EEGGGGSBTTTBCCHH
T ss_pred CcHHHHHhhcCCCCHH
Confidence 9999999877766653
No 210
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.13 E-value=1.3e-10 Score=123.84 Aligned_cols=92 Identities=21% Similarity=0.271 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +|+.||||.++.... ...+.|.+|++++.+++||||+++++++...+. .++||
T Consensus 17 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~ 94 (321)
T 2a2a_A 17 GEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD--VVLIL 94 (321)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEE
T ss_pred eeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE--EEEEE
Confidence 678999999999999975 799999999854321 135789999999999999999999999987776 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+++|+|.+++...+.+++.
T Consensus 95 e~~~~~~L~~~l~~~~~~~~~ 115 (321)
T 2a2a_A 95 ELVSGGELFDFLAQKESLSEE 115 (321)
T ss_dssp CCCCSCBHHHHHHTCSCEEHH
T ss_pred EcCCCCcHHHHHHhcCCCCHH
Confidence 999999999999887766653
No 211
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.12 E-value=1.3e-10 Score=121.47 Aligned_cols=92 Identities=22% Similarity=0.328 Sum_probs=79.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+.. +|+.||||.++.... ...+.|.+|++++.+++||||+++++++...+. .++||
T Consensus 10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~ 87 (283)
T 3bhy_A 10 GEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTD--VVLIL 87 (283)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEE
T ss_pred HHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCe--EEEEE
Confidence 578999999999999985 799999998854311 136789999999999999999999999988776 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+++|+|.+++..++.++|.
T Consensus 88 e~~~~~~L~~~l~~~~~~~~~ 108 (283)
T 3bhy_A 88 ELVSGGELFDFLAEKESLTED 108 (283)
T ss_dssp ECCCSCBHHHHHHHHSSCCHH
T ss_pred eecCCCcHHHHHHhcCCCCHH
Confidence 999999999999876666653
No 212
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.12 E-value=9.6e-11 Score=122.55 Aligned_cols=85 Identities=14% Similarity=0.084 Sum_probs=74.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.|.+|++.+.+++|||||++++++...+. .++||||+
T Consensus 36 ~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~ 113 (286)
T 3uqc_A 36 LIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAG--GLVVAEWI 113 (286)
T ss_dssp EEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred EEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCc--EEEEEEec
Confidence 568999999999999985 69999999996542 2334779999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhc
Q 003307 813 NAQSLAVYLQG 823 (832)
Q Consensus 813 ~~GsL~~~l~~ 823 (832)
++|+|.+++..
T Consensus 114 ~g~~L~~~l~~ 124 (286)
T 3uqc_A 114 RGGSLQEVADT 124 (286)
T ss_dssp CEEEHHHHHTT
T ss_pred CCCCHHHHHhc
Confidence 99999999864
No 213
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.12 E-value=9.9e-11 Score=130.19 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+. .+|+.||+|++.... ....+.+.+|++++++++|||||++++++...+. .++|||||+
T Consensus 16 ~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~--~~lv~E~~~ 93 (444)
T 3soa_A 16 FEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGH--HYLIFDLVT 93 (444)
T ss_dssp EEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSE--EEEEECCCB
T ss_pred EEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCE--EEEEEEeCC
Confidence 67899999999999987 489999999986432 2345679999999999999999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++..++.+++.
T Consensus 94 gg~L~~~i~~~~~~~e~ 110 (444)
T 3soa_A 94 GGELFEDIVAREYYSEA 110 (444)
T ss_dssp CCBHHHHHHHCSCCCHH
T ss_pred CCCHHHHHHHcCCCCHH
Confidence 99999999888776653
No 214
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.12 E-value=1.3e-10 Score=129.87 Aligned_cols=85 Identities=26% Similarity=0.458 Sum_probs=74.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|... |+.||||+++... ..+.|.+|++++.+++|||||+++++|...+. ..++|||||++|+
T Consensus 198 ~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~iv~e~~~~g~ 273 (450)
T 1k9a_A 198 LQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGS 273 (450)
T ss_dssp EEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTS-CEEEEEECCTTCB
T ss_pred EeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCC-ceEEEEEecCCCc
Confidence 578999999999999985 7899999997543 34679999999999999999999999886552 2899999999999
Q ss_pred HHHHHhcCC
Q 003307 817 LAVYLQGKG 825 (832)
Q Consensus 817 L~~~l~~~~ 825 (832)
|.++++..+
T Consensus 274 L~~~l~~~~ 282 (450)
T 1k9a_A 274 LVDYLRSRG 282 (450)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999998654
No 215
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.12 E-value=9.8e-11 Score=126.32 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=78.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||+||+|+.. +|+.||||+++.. .....+.+.+|.+++..+ +|||||++++++...+. .++||||
T Consensus 28 ~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~--~~lv~E~ 105 (353)
T 3txo_A 28 IRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDR--LFFVMEF 105 (353)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred EEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCE--EEEEEeC
Confidence 678999999999999974 7999999998643 122345688999999988 79999999999988777 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.+++.
T Consensus 106 ~~gg~L~~~l~~~~~~~~~ 124 (353)
T 3txo_A 106 VNGGDLMFHIQKSRRFDEA 124 (353)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999887766653
No 216
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.12 E-value=1.5e-10 Score=124.58 Aligned_cols=86 Identities=26% Similarity=0.393 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+.. +++.||||+++.. .....+.|.+|++++.+++||||++++++|...+. .++||
T Consensus 52 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~ 129 (343)
T 1luf_A 52 VRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP--MCLLF 129 (343)
T ss_dssp EEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc--eEEEE
Confidence 568999999999999973 3488999999654 33345779999999999999999999999988777 99999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
||+++|+|.++++..
T Consensus 130 e~~~~~~L~~~l~~~ 144 (343)
T 1luf_A 130 EYMAYGDLNEFLRSM 144 (343)
T ss_dssp ECCTTCBHHHHHHHT
T ss_pred ecCCCCcHHHHHHHh
Confidence 999999999999864
No 217
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.11 E-value=1.1e-10 Score=124.38 Aligned_cols=91 Identities=25% Similarity=0.276 Sum_probs=74.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC--ceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE--HEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~--~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. |+.||||++..... ....+.+|+.++.+++|||||++++++..... ...++|||||++
T Consensus 29 ~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~ 106 (322)
T 3soc_A 29 LEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEK 106 (322)
T ss_dssp EEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred hheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCC
Confidence 678999999999999985 79999999964332 34556779999999999999999999986542 236999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++++.+. ++|.
T Consensus 107 g~L~~~l~~~~-~~~~ 121 (322)
T 3soc_A 107 GSLSDFLKANV-VSWN 121 (322)
T ss_dssp CBHHHHHHHCC-BCHH
T ss_pred CCHHHHHHhcC-CCHH
Confidence 99999997643 5553
No 218
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.11 E-value=1.2e-10 Score=126.28 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=79.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +|..||+|++... .....+.+.+|++++.+++||||+++++++...+. .++|||||++
T Consensus 38 ~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 115 (360)
T 3eqc_A 38 ISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGE--ISICMEHMDG 115 (360)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTE--EEEEECCCTT
T ss_pred eeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCE--EEEEEECCCC
Confidence 568999999999999985 8999999998654 33445779999999999999999999999988776 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.++++..+.+++
T Consensus 116 ~~L~~~l~~~~~~~~ 130 (360)
T 3eqc_A 116 GSLDQVLKKAGRIPE 130 (360)
T ss_dssp CBHHHHHHHHSSCCH
T ss_pred CCHHHHHHHcCCCCH
Confidence 999999987766665
No 219
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.11 E-value=8.2e-11 Score=126.43 Aligned_cols=92 Identities=16% Similarity=0.271 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||.||+|+.. +|+.||||+++... ....+.+..|.+++.++ +|||||++++++.+.+. .++||||
T Consensus 22 ~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~--~~lv~E~ 99 (345)
T 1xjd_A 22 HKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN--LFFVMEY 99 (345)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE--EEEEEeC
Confidence 678999999999999984 79999999996431 12345678899999876 99999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.+++...+.+++.
T Consensus 100 ~~gg~L~~~l~~~~~~~~~ 118 (345)
T 1xjd_A 100 LNGGDLMYHIQSCHKFDLS 118 (345)
T ss_dssp CTTCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999876666653
No 220
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.11 E-value=1.2e-10 Score=125.47 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=78.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++.+++|||||++++++.+.+. .++||||+
T Consensus 46 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~ 123 (350)
T 1rdq_E 46 IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSN--LYMVMEYV 123 (350)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE--EEEEEcCC
Confidence 578999999999999974 79999999985432 1234678999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++..+.+++
T Consensus 124 ~gg~L~~~l~~~~~~~~ 140 (350)
T 1rdq_E 124 AGGEMFSHLRRIGRFSE 140 (350)
T ss_dssp TTCBHHHHHHHHCCCCH
T ss_pred CCCcHHHHHHHcCCCCH
Confidence 99999999987666655
No 221
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.11 E-value=1.6e-10 Score=121.51 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
..+||+|+||.||+|+. .+|+.||||.+........+.+.+|++++.+++||||+++++++...+. .++||||+++|
T Consensus 27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~~ 104 (295)
T 2clq_A 27 RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGF--IKIFMEQVPGG 104 (295)
T ss_dssp BCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECCSEE
T ss_pred cEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCc--EEEEEEeCCCC
Confidence 45899999999999997 5789999999976554456789999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcC
Q 003307 816 SLAVYLQGK 824 (832)
Q Consensus 816 sL~~~l~~~ 824 (832)
+|.++++..
T Consensus 105 ~L~~~l~~~ 113 (295)
T 2clq_A 105 SLSALLRSK 113 (295)
T ss_dssp EHHHHHHHT
T ss_pred CHHHHHHhh
Confidence 999999865
No 222
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.11 E-value=1e-11 Score=134.62 Aligned_cols=133 Identities=23% Similarity=0.238 Sum_probs=65.2
Q ss_pred cccEEEcCCCcCCCCCcccc-cCCCCCCEEEccCCcCCCCccccc-----CCCCCCCEEEccCCccccc----CcccccC
Q 003307 355 YVEDIHLSSNFLTGMVPNQT-SQFLRLTSFKVSNNSLEGDLPAVL-----GTYPELKVIDLSLNHLNGF----LLPSFFT 424 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~~~~~~~ 424 (832)
+|+.|+|++|.|+......+ ..+.+|+.|+|++|.|+......+ ...++|+.|+|++|.|+.. ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 46666666666543222222 223456666666666654332222 2345666666666666542 2223345
Q ss_pred CCCCCeEeccCCcccccC----CcccccCCCCCcccCcccccEEEccCCcCccc----CChhhhcCCCCCEEeCcCCcCc
Q 003307 425 STKLTDLNLSGNNFSGPL----PLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR----LLPGISKFHNLVYLNLSNNKFE 496 (832)
Q Consensus 425 l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 496 (832)
+++|++|+|++|.|+..- +..+... .+|+.|||++|.|++. +...+...++|+.|||++|.|+
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~---------~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRN---------RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGC---------SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcC---------CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 566666666666655311 1111111 1256666666666542 2223334455666666666554
No 223
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.10 E-value=2e-10 Score=118.78 Aligned_cols=90 Identities=23% Similarity=0.397 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|+..++..||||++..... ..+++.+|++++.+++||||+++++++...+. .++||||+++|+
T Consensus 13 ~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 89 (267)
T 3t9t_A 13 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVTEFMEHGC 89 (267)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--CEEEECCCTTCB
T ss_pred eeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC--eEEEEeCCCCCc
Confidence 578999999999999988888999999965432 34679999999999999999999999988777 999999999999
Q ss_pred HHHHHhcC-CCccc
Q 003307 817 LAVYLQGK-GLVLW 829 (832)
Q Consensus 817 L~~~l~~~-~~l~w 829 (832)
|.++++.. +.++|
T Consensus 90 L~~~~~~~~~~~~~ 103 (267)
T 3t9t_A 90 LSDYLRTQRGLFAA 103 (267)
T ss_dssp HHHHHHHTTTCCCH
T ss_pred HHHHHhhCcccCCH
Confidence 99999865 34554
No 224
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.10 E-value=9.6e-11 Score=128.87 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.++||+|+||+||+|+.. +|+.||||+++.... ...+.+.+|.+++.+++|||||++++++.+.+. .++|||||
T Consensus 66 ~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~--~~lVmE~~ 143 (412)
T 2vd5_A 66 LKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENY--LYLVMEYY 143 (412)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCE--EEEEEcCC
Confidence 578999999999999984 899999999954221 122348899999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCC-Cccc
Q 003307 813 NAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~-~l~w 829 (832)
++|+|.++++..+ .+++
T Consensus 144 ~gg~L~~~l~~~~~~l~~ 161 (412)
T 2vd5_A 144 VGGDLLTLLSKFGERIPA 161 (412)
T ss_dssp CSCBHHHHHHHHSSCCCH
T ss_pred CCCcHHHHHHhcCCCCCH
Confidence 9999999998643 5554
No 225
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.10 E-value=1.7e-10 Score=121.74 Aligned_cols=91 Identities=18% Similarity=0.330 Sum_probs=76.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|+.||+|.+........+.|.+|++++.+++||||+++++++...+. .++||||+++|
T Consensus 24 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 101 (302)
T 2j7t_A 24 VGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGK--LWIMIEFCPGG 101 (302)
T ss_dssp EEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-C--EEEEEECCTTE
T ss_pred cceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCe--EEEEEEeCCCC
Confidence 567999999999999985 799999999865544556789999999999999999999999998777 99999999999
Q ss_pred CHHHHHhc-CCCccc
Q 003307 816 SLAVYLQG-KGLVLW 829 (832)
Q Consensus 816 sL~~~l~~-~~~l~w 829 (832)
+|.+++.. .+.+++
T Consensus 102 ~l~~~~~~~~~~~~~ 116 (302)
T 2j7t_A 102 AVDAIMLELDRGLTE 116 (302)
T ss_dssp EHHHHHHHHTSCCCH
T ss_pred cHHHHHHhhccCCCH
Confidence 99999875 344554
No 226
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.10 E-value=2.4e-10 Score=125.48 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=78.3
Q ss_pred cCeeeec--cCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRS--CHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G--~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+| +||.||+|+.. +|+.||||+++.. .....+.+.+|++++++++|||||++++++...+. .++||||
T Consensus 30 ~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~ 107 (389)
T 3gni_B 30 LTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNE--LWVVTSF 107 (389)
T ss_dssp EEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEEC
T ss_pred EecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCE--EEEEEEc
Confidence 6789999 99999999985 8999999998543 23345678899999999999999999999998776 9999999
Q ss_pred CCCCCHHHHHhcC--CCccc
Q 003307 812 INAQSLAVYLQGK--GLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~--~~l~w 829 (832)
|++|+|.+++... ..+++
T Consensus 108 ~~~~~L~~~l~~~~~~~~~~ 127 (389)
T 3gni_B 108 MAYGSAKDLICTHFMDGMNE 127 (389)
T ss_dssp CTTCBHHHHHHHTCTTCCCH
T ss_pred cCCCCHHHHHhhhcccCCCH
Confidence 9999999999865 44554
No 227
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.10 E-value=2.2e-10 Score=119.71 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=78.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||+++++++...+. .++||||++
T Consensus 11 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~~ 88 (284)
T 3kk8_A 11 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESF--HYLVFDLVT 88 (284)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCC
T ss_pred hhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCE--EEEEEecCC
Confidence 678999999999999974 7999999998543 33345678999999999999999999999987776 899999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.+++..++.+++
T Consensus 89 ~~~l~~~~~~~~~~~~ 104 (284)
T 3kk8_A 89 GGELFEDIVAREFYSE 104 (284)
T ss_dssp SCBHHHHHHHHSSCCH
T ss_pred CCCHHHHHHhcCCCCH
Confidence 9999999887766655
No 228
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.10 E-value=1.9e-08 Score=110.33 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=33.6
Q ss_pred CCEEECCCCCCCccCcccccCCCCCCEEEccccc---ccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEE
Q 003307 115 LEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS---FEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVD 191 (832)
Q Consensus 115 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 191 (832)
|+.+.+..+ ++.+...+|.++++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+....|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 444444332 343444444445555555444432 33333444444555544444332 2323333444444444444
Q ss_pred Cc
Q 003307 192 LS 193 (832)
Q Consensus 192 Ls 193 (832)
+.
T Consensus 144 lp 145 (394)
T 4gt6_A 144 IP 145 (394)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 229
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.10 E-value=1.3e-10 Score=125.47 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++.+++|||||+++++|...+. .++|||
T Consensus 29 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~--~~lv~e 106 (351)
T 3c0i_A 29 CEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGM--LYMVFE 106 (351)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEE
T ss_pred eeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE--EEEEEe
Confidence 578999999999999974 89999999984321 1235779999999999999999999999988776 999999
Q ss_pred cCCCCCHHHHHhc
Q 003307 811 YINAQSLAVYLQG 823 (832)
Q Consensus 811 ~~~~GsL~~~l~~ 823 (832)
||++|+|.+++..
T Consensus 107 ~~~g~~L~~~l~~ 119 (351)
T 3c0i_A 107 FMDGADLCFEIVK 119 (351)
T ss_dssp CCSSCBHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9999999988864
No 230
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.10 E-value=2.7e-10 Score=122.28 Aligned_cols=92 Identities=11% Similarity=0.200 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+++.. +++.||+|++... .....+.|.+|++++.+++||||+++++++...+. .++|||||
T Consensus 46 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~ 123 (335)
T 2owb_A 46 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDF--VFVVLELC 123 (335)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCe--EEEEEecC
Confidence 678999999999999985 7899999998543 23345779999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.++|.
T Consensus 124 ~~~~L~~~~~~~~~l~~~ 141 (335)
T 2owb_A 124 RRRSLLELHKRRKALTEP 141 (335)
T ss_dssp TTCBHHHHHHHHCSCCHH
T ss_pred CCCCHHHHHhccCCCCHH
Confidence 999999999876666653
No 231
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.10 E-value=1.1e-10 Score=132.19 Aligned_cols=90 Identities=28% Similarity=0.370 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+.. ++..||||.++.... ..++|.+|+++|++++|||||+++++|...+. .++|||||++|
T Consensus 225 ~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~--~~lv~E~~~~g 301 (495)
T 1opk_A 225 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMTYG 301 (495)
T ss_dssp EEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEEECCTTC
T ss_pred eeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCc--EEEEEEccCCC
Confidence 678999999999999985 589999999965432 35789999999999999999999999988777 99999999999
Q ss_pred CHHHHHhcC--CCccc
Q 003307 816 SLAVYLQGK--GLVLW 829 (832)
Q Consensus 816 sL~~~l~~~--~~l~w 829 (832)
+|.++++.. ..++|
T Consensus 302 ~L~~~l~~~~~~~~~~ 317 (495)
T 1opk_A 302 NLLDYLRECNRQEVSA 317 (495)
T ss_dssp BHHHHHHHSCTTTSCH
T ss_pred CHHHHHHhcCcCCCCH
Confidence 999999853 33554
No 232
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.10 E-value=1.3e-10 Score=127.79 Aligned_cols=89 Identities=18% Similarity=0.317 Sum_probs=75.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.++||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++|||||++++++...+....++|||||++
T Consensus 14 ~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~ 93 (396)
T 4eut_A 14 SDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPC 93 (396)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTT
T ss_pred EEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCC
Confidence 678999999999999985 79999999996432 2345778899999999999999999999987664348999999999
Q ss_pred CCHHHHHhcCC
Q 003307 815 QSLAVYLQGKG 825 (832)
Q Consensus 815 GsL~~~l~~~~ 825 (832)
|+|.++++...
T Consensus 94 g~L~~~l~~~~ 104 (396)
T 4eut_A 94 GSLYTVLEEPS 104 (396)
T ss_dssp EEHHHHTTSGG
T ss_pred CCHHHHHHhhh
Confidence 99999997643
No 233
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.10 E-value=1.9e-10 Score=120.36 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|..||||++.... ....+.+.+|++++.+++||||++++++|...+. .++||||+++
T Consensus 27 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~~ 104 (285)
T 3is5_A 27 KRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHN--MYIVMETCEG 104 (285)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCCSC
T ss_pred cceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCe--EEEEEEeCCC
Confidence 67899999999999997 479999999985432 2345789999999999999999999999987776 9999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.+++..
T Consensus 105 ~~L~~~l~~ 113 (285)
T 3is5_A 105 GELLERIVS 113 (285)
T ss_dssp CBHHHHHHH
T ss_pred CcHHHHHHh
Confidence 999999854
No 234
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.09 E-value=1.7e-10 Score=129.28 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=74.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|...++..||||+++... ...+.|.+|++++++++|||||++++++. .+. .++|||||++|+
T Consensus 193 ~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~--~~lv~e~~~~g~ 268 (454)
T 1qcf_A 193 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEP--IYIITEFMAKGS 268 (454)
T ss_dssp EEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSS--CEEEECCCTTCB
T ss_pred EEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCc--cEEEEeecCCCc
Confidence 67899999999999999888899999997543 24678999999999999999999999986 344 899999999999
Q ss_pred HHHHHhcC
Q 003307 817 LAVYLQGK 824 (832)
Q Consensus 817 L~~~l~~~ 824 (832)
|.++++..
T Consensus 269 L~~~l~~~ 276 (454)
T 1qcf_A 269 LLDFLKSD 276 (454)
T ss_dssp HHHHHHSH
T ss_pred HHHHHHhc
Confidence 99999853
No 235
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.09 E-value=7.3e-11 Score=129.73 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=73.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||+||+|+.. +|+.||||+++.... ...+.+.+|++++..++|||||+++++|.+.+. .++|||||
T Consensus 74 ~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~--~~lV~E~~ 151 (410)
T 3v8s_A 74 VKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRY--LYMVMEYM 151 (410)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE--EEEEEeCC
Confidence 578999999999999985 799999999854211 122348899999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 152 ~gg~L~~~l~~~ 163 (410)
T 3v8s_A 152 PGGDLVNLMSNY 163 (410)
T ss_dssp TTEEHHHHHHHC
T ss_pred CCCcHHHHHHcC
Confidence 999999999764
No 236
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.09 E-value=1.1e-10 Score=130.68 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=79.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+++++.++||||+++++++...+. .++|||||
T Consensus 21 ~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~--~~lv~E~~ 98 (476)
T 2y94_A 21 GDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSD--IFMVMEYV 98 (476)
T ss_dssp EEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEeCC
Confidence 678999999999999985 899999999854321 234678999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.+++.
T Consensus 99 ~gg~L~~~l~~~~~l~~~ 116 (476)
T 2y94_A 99 SGGELFDYICKNGRLDEK 116 (476)
T ss_dssp SSEEHHHHTTSSSSCCHH
T ss_pred CCCcHHHHHHhcCCCCHH
Confidence 999999999887777653
No 237
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.09 E-value=2e-10 Score=130.57 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh-------------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA-------------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-------------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~ 802 (832)
...||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++.+++|||||+++++|.....
T Consensus 41 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~ 120 (504)
T 3q5i_A 41 VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKY 120 (504)
T ss_dssp EEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred EeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE
Confidence 578999999999999974 789999999854321 235679999999999999999999999998776
Q ss_pred ceEEEEEecCCCCCHHHHHhcCCCcccc
Q 003307 803 HEKLVISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 803 ~~~~lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
.++|||||++|+|.+++...+.++|.
T Consensus 121 --~~lv~e~~~gg~L~~~l~~~~~~~~~ 146 (504)
T 3q5i_A 121 --FYLVTEFYEGGELFEQIINRHKFDEC 146 (504)
T ss_dssp --EEEEEECCTTCBHHHHHHHHSCCCHH
T ss_pred --EEEEEecCCCCcHHHHHHHcCCCCHH
Confidence 99999999999999999877777664
No 238
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.09 E-value=9.8e-11 Score=127.99 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||+||+|+.. +|+.||||+++.... ...+.+.+|..++.++ +|||||++++++...+. .++||||
T Consensus 57 ~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~--~~lV~E~ 134 (396)
T 4dc2_A 57 LRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESR--LFFVIEY 134 (396)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCE--EEEEEEc
Confidence 678999999999999985 789999999964321 2234578899999876 89999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.+++.
T Consensus 135 ~~gg~L~~~l~~~~~l~~~ 153 (396)
T 4dc2_A 135 VNGGDLMFHMQRQRKLPEE 153 (396)
T ss_dssp CTTCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999887777654
No 239
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.09 E-value=6.4e-11 Score=125.68 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc--eEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH--EKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~--~~~lv~e 810 (832)
.+.||+|+||.||+|+. .+|+.||||+++... ......|.+|++++.+++|||||++++++...... ..++|||
T Consensus 17 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e 96 (311)
T 3ork_A 17 GEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVME 96 (311)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEe
Confidence 67899999999999997 589999999996532 23346789999999999999999999998755431 2499999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
|+++|+|.++++..+.++|.
T Consensus 97 ~~~g~~L~~~l~~~~~~~~~ 116 (311)
T 3ork_A 97 YVDGVTLRDIVHTEGPMTPK 116 (311)
T ss_dssp CCCEEEHHHHHHHHCSCCHH
T ss_pred cCCCCCHHHHHHhcCCCCHH
Confidence 99999999999877766653
No 240
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.09 E-value=2.3e-10 Score=121.43 Aligned_cols=87 Identities=25% Similarity=0.364 Sum_probs=75.4
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+. .+|..||||+++.. .....+.+.+|++++.+++|||||++++++...+. .++||
T Consensus 28 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~ 105 (314)
T 2ivs_A 28 GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP--LLLIV 105 (314)
T ss_dssp EEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc--eEEEE
Confidence 67899999999999985 24588999999654 33445779999999999999999999999987777 99999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
||+++|+|.++++..+
T Consensus 106 e~~~~~~L~~~l~~~~ 121 (314)
T 2ivs_A 106 EYAKYGSLRGFLRESR 121 (314)
T ss_dssp ECCTTCBHHHHHHHTT
T ss_pred eecCCCCHHHHHHHHh
Confidence 9999999999998654
No 241
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.08 E-value=1.7e-10 Score=120.23 Aligned_cols=91 Identities=26% Similarity=0.350 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. ++..||||++.... ....+.+.+|++++++++||||++++++|...+. .++||||+
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 91 (279)
T 3fdn_A 14 GRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATR--VYLILEYA 91 (279)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred eeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCE--EEEEEecC
Confidence 678999999999999974 78899999985422 1235678999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 92 ~~~~l~~~l~~~~~~~~ 108 (279)
T 3fdn_A 92 PLGTVYRELQKLSKFDE 108 (279)
T ss_dssp TTEEHHHHHHHHSSCCH
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 99999999987666654
No 242
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.07 E-value=2.1e-10 Score=133.58 Aligned_cols=91 Identities=21% Similarity=0.237 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEE---CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL---DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~---~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
++.||+|+||.||+|.+ ..++.||||+++... ....++|.+|++++.+++|||||+++++|.. +. .++||||
T Consensus 374 ~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~--~~lv~E~ 450 (635)
T 4fl3_A 374 DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ES--WMLVMEM 450 (635)
T ss_dssp EEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SS--EEEEEEC
T ss_pred CCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CC--EEEEEEc
Confidence 35799999999999975 356889999996532 2346789999999999999999999999964 34 7999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.++|.
T Consensus 451 ~~~g~L~~~l~~~~~l~~~ 469 (635)
T 4fl3_A 451 AELGPLNKYLQQNRHVKDK 469 (635)
T ss_dssp CTTEEHHHHHHHCTTCCHH
T ss_pred cCCCCHHHHHhhCCCCCHH
Confidence 9999999999988877764
No 243
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.07 E-value=2.4e-10 Score=121.60 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=76.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--CCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--KEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+. .+|+.||||++........+.+.+|++++.+++||||+++++++... .....++|+||++
T Consensus 34 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~ 113 (317)
T 2buj_A 34 IQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFK 113 (317)
T ss_dssp EEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCT
T ss_pred EEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCC
Confidence 67899999999999997 58999999998665555677899999999999999999999998732 2224899999999
Q ss_pred CCCHHHHHhc----CCCccc
Q 003307 814 AQSLAVYLQG----KGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~----~~~l~w 829 (832)
+|+|.++++. ...++|
T Consensus 114 ~~~L~~~l~~~~~~~~~~~~ 133 (317)
T 2buj_A 114 RGTLWNEIERLKDKGNFLTE 133 (317)
T ss_dssp TCBHHHHHHHHHTTTCCCCH
T ss_pred CCcHHHHHHHHHhcCCCCCH
Confidence 9999999975 344554
No 244
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1.8e-08 Score=110.49 Aligned_cols=157 Identities=10% Similarity=0.072 Sum_probs=111.5
Q ss_pred cccccCCC-CCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCC---CCccCcccccCCCCCCEEEcccccccccCCCCC
Q 003307 83 FPTIIGLK-MLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNL---FHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGF 157 (832)
Q Consensus 83 ~~~~~~l~-~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 157 (832)
...|.+++ .|+.+.+..+ ++.... .|.+|++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+...+|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34566774 5999999764 665555 89999999999998764 77777789999999999988765 555777889
Q ss_pred CCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCC
Q 003307 158 GGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYF 237 (832)
Q Consensus 158 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 237 (832)
.++.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++. +... .+. ..+|+.+.+..+-.. . ....+..+
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~-I~~~--aF~-~~~l~~i~ip~~~~~-i--~~~af~~c 204 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTA-IEER--AFT-GTALTQIHIPAKVTR-I--GTNAFSEC 204 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCE-ECTT--TTT-TCCCSEEEECTTCCE-E--CTTTTTTC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeE-eccc--ccc-ccceeEEEECCcccc-c--ccchhhhc
Confidence 99999999999754 45566678899999999999765 331 2211 122 256777777655432 1 12236677
Q ss_pred CCcCEEEccCCcc
Q 003307 238 DNLEVFDASNNHL 250 (832)
Q Consensus 238 ~~L~~L~Ls~N~l 250 (832)
.+++......+..
T Consensus 205 ~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 205 FALSTITSDSESY 217 (394)
T ss_dssp TTCCEEEECCSSS
T ss_pred cccceeccccccc
Confidence 7777776665544
No 245
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.07 E-value=2.5e-10 Score=121.00 Aligned_cols=92 Identities=26% Similarity=0.320 Sum_probs=78.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++.+++||||+++++++...+. .++|||||+
T Consensus 8 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 85 (311)
T 4agu_A 8 IGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRR--LHLVFEYCD 85 (311)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred eeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCe--EEEEEEeCC
Confidence 568999999999999985 79999999885432 2335678999999999999999999999988776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.++++..+.+++.
T Consensus 86 ~~~l~~~~~~~~~~~~~ 102 (311)
T 4agu_A 86 HTVLHELDRYQRGVPEH 102 (311)
T ss_dssp EEHHHHHHHTSSCCCHH
T ss_pred CchHHHHHhhhcCCCHH
Confidence 99999998877766653
No 246
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.07 E-value=2.9e-10 Score=128.66 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=80.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||+++++|...+. .++|+|||
T Consensus 31 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~ 108 (484)
T 3nyv_A 31 QRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGY--FYLVGEVY 108 (484)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred eeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE--EEEEEecC
Confidence 578999999999999985 89999999985331 2346789999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++..++.+++.
T Consensus 109 ~~~~L~~~~~~~~~~~~~ 126 (484)
T 3nyv_A 109 TGGELFDEIISRKRFSEV 126 (484)
T ss_dssp CSCBHHHHHHTCSCCBHH
T ss_pred CCCCHHHHHHhcCCCCHH
Confidence 999999999888777653
No 247
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.07 E-value=2.1e-10 Score=128.38 Aligned_cols=83 Identities=23% Similarity=0.488 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|...++..||||+++.... ..++|.+|++++.+++|||||+++++|.. +. .++|||||++|+
T Consensus 189 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~--~~iv~e~~~~gs 264 (452)
T 1fmk_A 189 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP--IYIVTEYMSKGS 264 (452)
T ss_dssp EEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS--CEEEECCCTTCB
T ss_pred eeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-Cc--eEEEehhhcCCC
Confidence 668999999999999998778899999975432 35789999999999999999999999875 44 799999999999
Q ss_pred HHHHHhc
Q 003307 817 LAVYLQG 823 (832)
Q Consensus 817 L~~~l~~ 823 (832)
|.++++.
T Consensus 265 L~~~l~~ 271 (452)
T 1fmk_A 265 LLDFLKG 271 (452)
T ss_dssp HHHHHSH
T ss_pred HHHHHHh
Confidence 9999974
No 248
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.07 E-value=2.6e-10 Score=121.78 Aligned_cols=93 Identities=24% Similarity=0.445 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|++ .+|+.||||++........+.|.+|++++.+++||||+++++++...+....++||||
T Consensus 46 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~ 125 (326)
T 2w1i_A 46 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEY 125 (326)
T ss_dssp EEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECC
T ss_pred eeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEEC
Confidence 57899999999999984 3789999999976655556789999999999999999999999876553238999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++..+ .++|
T Consensus 126 ~~~~~L~~~l~~~~~~~~~ 144 (326)
T 2w1i_A 126 LPYGSLRDYLQKHKERIDH 144 (326)
T ss_dssp CTTCBHHHHHHHSTTSSCH
T ss_pred CCCCCHHHHHHhcccCCCH
Confidence 99999999998653 4554
No 249
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.07 E-value=3.8e-10 Score=118.31 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--CCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--KEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--~~~~~~lv~e~ 811 (832)
...||+|+||.||+|.. .++..||+|.+... .....+.|.+|++++.+++||||++++++|... +....++||||
T Consensus 31 ~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~ 110 (290)
T 1t4h_A 31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL 110 (290)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEEC
T ss_pred eeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEe
Confidence 56799999999999997 47899999998543 334467799999999999999999999998642 22248999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
+++|+|.+++...+.+++
T Consensus 111 ~~~~~L~~~l~~~~~~~~ 128 (290)
T 1t4h_A 111 MTSGTLKTYLKRFKVMKI 128 (290)
T ss_dssp CCSCBHHHHHHHHSSCCH
T ss_pred cCCCCHHHHHHHccCCCH
Confidence 999999999987666655
No 250
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.07 E-value=2e-10 Score=130.17 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=74.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|..||||++.... ......+.+|++++++++|||||+++++|..... .++|||||+
T Consensus 42 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~~ 119 (494)
T 3lij_A 42 VKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRN--YYLVMECYK 119 (494)
T ss_dssp EEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEEECCC
T ss_pred eeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE--EEEEEecCC
Confidence 568999999999999985 89999999986432 2235678999999999999999999999998776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.+++..+..+++
T Consensus 120 ~g~L~~~~~~~~~~~~ 135 (494)
T 3lij_A 120 GGELFDEIIHRMKFNE 135 (494)
T ss_dssp SCBHHHHHHHHSSCCH
T ss_pred CCcHHHHHHHcCCCCH
Confidence 9999999987766665
No 251
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.07 E-value=2.6e-10 Score=120.06 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=77.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---------hhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---------AKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---------~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~ 805 (832)
...||+|+||.||+|+.. +|+.||||.++... ....+.+.+|++++.+++ ||||+++++++...+. .
T Consensus 22 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~--~ 99 (298)
T 1phk_A 22 KEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTF--F 99 (298)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE--E
T ss_pred eeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCe--E
Confidence 678999999999999984 78999999985432 122456889999999996 9999999999987766 9
Q ss_pred EEEEecCCCCCHHHHHhcCCCccc
Q 003307 806 LVISNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~~~l~w 829 (832)
++||||+++|+|.+++..+..+++
T Consensus 100 ~lv~e~~~~~~L~~~l~~~~~~~~ 123 (298)
T 1phk_A 100 FLVFDLMKKGELFDYLTEKVTLSE 123 (298)
T ss_dssp EEEEECCTTCBHHHHHHHHSSCCH
T ss_pred EEEEeccCCCcHHHHHhccCCCCH
Confidence 999999999999999987666655
No 252
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.07 E-value=2.9e-10 Score=121.90 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=73.9
Q ss_pred cCeeeeccCceEEEEEE--------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL--------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
...||+|+||.||+|+. .++..||||+++.. .....+.+.+|++++.++ +||||++++++|...+. .+
T Consensus 40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~--~~ 117 (334)
T 2pvf_A 40 GKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP--LY 117 (334)
T ss_dssp EEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSC--CE
T ss_pred eeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCc--eE
Confidence 67899999999999986 25678999999654 334457799999999999 99999999999987777 99
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 003307 807 VISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~ 825 (832)
+||||+++|+|.++++..+
T Consensus 118 lv~e~~~~~~L~~~l~~~~ 136 (334)
T 2pvf_A 118 VIVEYASKGNLREYLRARR 136 (334)
T ss_dssp EEEECCTTCBHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHhc
Confidence 9999999999999998654
No 253
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.07 E-value=2.4e-10 Score=121.06 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=79.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.|.+|++++.+++||||+++++++...+. .++|+||+
T Consensus 39 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~ 116 (309)
T 2h34_A 39 RRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQ--LYVDMRLI 116 (309)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred EEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCe--EEEEEEec
Confidence 678999999999999974 78999999986432 2234679999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.++|.
T Consensus 117 ~~~~L~~~l~~~~~~~~~ 134 (309)
T 2h34_A 117 NGVDLAAMLRRQGPLAPP 134 (309)
T ss_dssp CCEEHHHHHHHHCSCCHH
T ss_pred CCCCHHHHHHhcCCCCHH
Confidence 999999999877666653
No 254
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.06 E-value=1.9e-10 Score=124.72 Aligned_cols=88 Identities=30% Similarity=0.438 Sum_probs=74.1
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+|+.||||+++.. .....+.|.+|++++.++ +|||||+++++|...+. ..++|
T Consensus 27 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~-~~~iv 105 (359)
T 3vhe_A 27 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG-PLMVI 105 (359)
T ss_dssp EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTS-CCEEE
T ss_pred ceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCC-ceEEE
Confidence 67899999999999983 35689999999654 333456799999999999 89999999999976543 37999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
||||++|+|.++++...
T Consensus 106 ~e~~~~g~L~~~l~~~~ 122 (359)
T 3vhe_A 106 VEFCKFGNLSTYLRSKR 122 (359)
T ss_dssp EECCTTEEHHHHHHTTT
T ss_pred EEecCCCcHHHHHHhcc
Confidence 99999999999998654
No 255
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.06 E-value=1.7e-10 Score=125.49 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+. .+++.||||+++.. .......|.+|+.++.+++|||||++++++..... .++||
T Consensus 76 ~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~--~~lv~ 153 (367)
T 3l9p_A 76 IRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP--RFILL 153 (367)
T ss_dssp EEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC--CEEEE
Confidence 56899999999999994 25678999999643 34455679999999999999999999999988777 89999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
|||++|+|.++++..
T Consensus 154 e~~~~g~L~~~l~~~ 168 (367)
T 3l9p_A 154 ELMAGGDLKSFLRET 168 (367)
T ss_dssp ECCTTEEHHHHHHHH
T ss_pred EeCCCCCHHHHHHhh
Confidence 999999999999864
No 256
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.06 E-value=2.7e-10 Score=118.48 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||.+.... ....+.+.+|++++.+++||||+++++++...+. .++||||+
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 93 (276)
T 2h6d_A 16 GDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTD--FFMVMEYV 93 (276)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCe--EEEEEecc
Confidence 678999999999999985 89999999985421 1234678999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 94 ~~~~L~~~l~~~~~~~~ 110 (276)
T 2h6d_A 94 SGGELFDYICKHGRVEE 110 (276)
T ss_dssp CSCBHHHHHHHHCSCCH
T ss_pred CCCcHHHHHhccCCCCH
Confidence 99999999987666654
No 257
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.06 E-value=1.4e-10 Score=124.01 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=77.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++..++|||||++++++...+. .++||||+
T Consensus 14 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~--~~lv~E~~ 91 (336)
T 3h4j_B 14 RETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTD--IVMVIEYA 91 (336)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE--EEEEEECC
Confidence 67899999999999997 589999999985321 1123578999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++..++.+++.
T Consensus 92 -~g~l~~~l~~~~~l~~~ 108 (336)
T 3h4j_B 92 -GGELFDYIVEKKRMTED 108 (336)
T ss_dssp -CEEHHHHHHHHCSCCHH
T ss_pred -CCcHHHHHHHcCCCCHH
Confidence 68999999877776653
No 258
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.06 E-value=2.5e-10 Score=129.82 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=77.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
..+||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++.+++|||||++++++.+.+. .++|||||
T Consensus 189 ~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~--l~lVmEy~ 266 (576)
T 2acx_A 189 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDA--LCLVLTLM 266 (576)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCE--EEEEEEcC
Confidence 568999999999999984 89999999985421 2234668899999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcCCC--ccc
Q 003307 813 NAQSLAVYLQGKGL--VLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~--l~w 829 (832)
++|+|.++++..+. ++|
T Consensus 267 ~gg~L~~~l~~~~~~~l~e 285 (576)
T 2acx_A 267 NGGDLKFHIYHMGQAGFPE 285 (576)
T ss_dssp CSCBHHHHHHSSSSCCCCH
T ss_pred CCCcHHHHHHhcCCCCCCH
Confidence 99999999986543 554
No 259
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.06 E-value=2.3e-10 Score=119.27 Aligned_cols=87 Identities=25% Similarity=0.328 Sum_probs=74.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.|.+|++++.+++||||+++++++........++||||++
T Consensus 11 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~ 90 (279)
T 2w5a_A 11 LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCE 90 (279)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCT
T ss_pred ehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCC
Confidence 578999999999999984 8999999998643 2334567999999999999999999999986543334899999999
Q ss_pred CCCHHHHHhc
Q 003307 814 AQSLAVYLQG 823 (832)
Q Consensus 814 ~GsL~~~l~~ 823 (832)
+|+|.+++..
T Consensus 91 ~~~L~~~l~~ 100 (279)
T 2w5a_A 91 GGDLASVITK 100 (279)
T ss_dssp TEEHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 9999999975
No 260
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.06 E-value=3.7e-10 Score=119.14 Aligned_cols=93 Identities=22% Similarity=0.313 Sum_probs=73.7
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|++ .+|+.||||+++.. .....+.+.+|++++.+++||||+++++++...+....++|||
T Consensus 26 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e 105 (302)
T 4e5w_A 26 IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIME 105 (302)
T ss_dssp EEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEE
T ss_pred hhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEE
Confidence 56899999999999984 47899999998643 2234577999999999999999999999998764333899999
Q ss_pred cCCCCCHHHHHhc-CCCccc
Q 003307 811 YINAQSLAVYLQG-KGLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~-~~~l~w 829 (832)
|+++|+|.++++. ...+++
T Consensus 106 ~~~~~~L~~~l~~~~~~~~~ 125 (302)
T 4e5w_A 106 FLPSGSLKEYLPKNKNKINL 125 (302)
T ss_dssp CCTTCBHHHHHHHHTTTCCH
T ss_pred eCCCCcHHHHHHhccccCCH
Confidence 9999999999954 344554
No 261
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.06 E-value=4.9e-10 Score=119.24 Aligned_cols=92 Identities=17% Similarity=0.312 Sum_probs=76.2
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||++.+ .+|+.||||+++... ....+.|.+|++++.+++||||+++++++...+....++|||
T Consensus 36 ~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e 115 (318)
T 3lxp_A 36 IRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVME 115 (318)
T ss_dssp EEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEEC
T ss_pred hheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEe
Confidence 56899999999999875 268899999996543 344677999999999999999999999998754434899999
Q ss_pred cCCCCCHHHHHhcCCCccc
Q 003307 811 YINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w 829 (832)
|+++|+|.+++.... ++|
T Consensus 116 ~~~~~~L~~~l~~~~-~~~ 133 (318)
T 3lxp_A 116 YVPLGSLRDYLPRHS-IGL 133 (318)
T ss_dssp CCTTCBHHHHGGGSC-CCH
T ss_pred cccCCcHHHHHhhCC-CCH
Confidence 999999999987654 443
No 262
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.06 E-value=3.4e-10 Score=118.35 Aligned_cols=86 Identities=24% Similarity=0.330 Sum_probs=75.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||++... ......++.+|+..+.++ +||||+++++++...+. .++||||+
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~--~~lv~e~~ 93 (289)
T 1x8b_A 16 LEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDH--MLIQNEYC 93 (289)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred hhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCe--EEEEEEec
Confidence 578999999999999985 8999999998643 233457789999999999 99999999999988776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 94 ~~~~L~~~l~~~ 105 (289)
T 1x8b_A 94 NGGSLADAISEN 105 (289)
T ss_dssp TTCBHHHHHHHH
T ss_pred CCCcHHHHHHhh
Confidence 999999999764
No 263
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.06 E-value=2e-10 Score=123.74 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=73.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-----ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-----IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+. .+++.||||++... .....+.|.+|++++.+++|||||+++++|...+. .++|||
T Consensus 31 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e 108 (345)
T 3hko_A 31 KGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQY--ICLVME 108 (345)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEEE
T ss_pred cceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCe--EEEEEe
Confidence 67899999999999997 48899999998532 22345779999999999999999999999988776 999999
Q ss_pred cCCCCCHHHHHh
Q 003307 811 YINAQSLAVYLQ 822 (832)
Q Consensus 811 ~~~~GsL~~~l~ 822 (832)
||++|+|.+++.
T Consensus 109 ~~~gg~L~~~l~ 120 (345)
T 3hko_A 109 LCHGGHLLDKLN 120 (345)
T ss_dssp CCCSCBHHHHEE
T ss_pred CCCCCcHHHHHH
Confidence 999999999985
No 264
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.05 E-value=2.6e-10 Score=120.65 Aligned_cols=83 Identities=29% Similarity=0.486 Sum_probs=72.3
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|+.. ++.||||++... ...+.|.+|++++++++|||||+++++|. +. .++||||+++|+
T Consensus 13 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~--~~lv~e~~~~~~ 85 (307)
T 2eva_A 13 EEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NP--VCLVMEYAEGGS 85 (307)
T ss_dssp EEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TT--TEEEEECCTTCB
T ss_pred eeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CC--cEEEEEcCCCCC
Confidence 678999999999999984 789999998643 23577999999999999999999999886 34 789999999999
Q ss_pred HHHHHhcCCC
Q 003307 817 LAVYLQGKGL 826 (832)
Q Consensus 817 L~~~l~~~~~ 826 (832)
|.++++..+.
T Consensus 86 L~~~l~~~~~ 95 (307)
T 2eva_A 86 LYNVLHGAEP 95 (307)
T ss_dssp HHHHHHCSSS
T ss_pred HHHHHhccCC
Confidence 9999987654
No 265
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.05 E-value=2.9e-10 Score=118.42 Aligned_cols=91 Identities=19% Similarity=0.325 Sum_probs=77.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+. .+|+.||||.+.... ....+.+.+|++++.+++||||+++++++...+. .++||||+
T Consensus 16 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 93 (278)
T 3cok_A 16 GNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNY--VYLVLEMC 93 (278)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred eeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCe--EEEEEecC
Confidence 67899999999999997 589999999985321 1224678999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcC-CCccc
Q 003307 813 NAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~-~~l~w 829 (832)
++|+|.+++... ..+++
T Consensus 94 ~~~~L~~~l~~~~~~~~~ 111 (278)
T 3cok_A 94 HNGEMNRYLKNRVKPFSE 111 (278)
T ss_dssp TTEEHHHHHHTCSSCCCH
T ss_pred CCCcHHHHHhhccCCCCH
Confidence 999999999865 44554
No 266
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.05 E-value=3.1e-10 Score=124.08 Aligned_cols=87 Identities=25% Similarity=0.359 Sum_probs=74.7
Q ss_pred cCeeeeccCceEEEEEE--------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL--------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
...||+|+||.||+|+. ..+..||||+++.. .....+.+.+|++++.++ +|||||+++++|...+. .+
T Consensus 74 ~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~--~~ 151 (382)
T 3tt0_A 74 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LY 151 (382)
T ss_dssp EEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CE
T ss_pred eeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCc--eE
Confidence 67899999999999985 13357999999654 334457799999999999 99999999999988777 99
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 003307 807 VISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~ 825 (832)
+||||+++|+|.++++..+
T Consensus 152 lv~e~~~~g~L~~~l~~~~ 170 (382)
T 3tt0_A 152 VIVEYASKGNLREYLQARR 170 (382)
T ss_dssp EEEECCTTCBHHHHHHHTC
T ss_pred EEEEecCCCcHHHHHHHhc
Confidence 9999999999999998754
No 267
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.05 E-value=2.7e-10 Score=120.89 Aligned_cols=87 Identities=28% Similarity=0.375 Sum_probs=75.6
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+++.||||+++... ....+.|.+|++++.++ +||||++++++|...+. .++|
T Consensus 28 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~--~~lv 105 (313)
T 1t46_A 28 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP--TLVI 105 (313)
T ss_dssp EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEE
T ss_pred HHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC--cEEE
Confidence 67899999999999984 357899999996543 33457799999999999 99999999999988777 9999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
|||+++|+|.++++..+
T Consensus 106 ~e~~~~~~L~~~l~~~~ 122 (313)
T 1t46_A 106 TEYCCYGDLLNFLRRKR 122 (313)
T ss_dssp EECCTTEEHHHHHHHTT
T ss_pred EecCCCCCHHHHHHhcc
Confidence 99999999999998654
No 268
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.05 E-value=1.1e-10 Score=130.65 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=70.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|+.||||+++.. .......+.+|++++.+++|||||+++++|...+. .++|||||
T Consensus 153 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~--~~lv~e~~ 230 (446)
T 4ejn_A 153 LKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDR--LCFVMEYA 230 (446)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTE--EEEEECCC
T ss_pred eEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCE--EEEEEeeC
Confidence 67899999999999997 48999999998542 22234568899999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.+++.
T Consensus 231 ~~~~L~~~l~~~~~~~~~ 248 (446)
T 4ejn_A 231 NGGELFFHLSRERVFSED 248 (446)
T ss_dssp SSCBHHHHHHHHSCCCHH
T ss_pred CCCcHHHHHHhcCCCCHH
Confidence 999999999877766653
No 269
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.05 E-value=2.4e-10 Score=122.81 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=75.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +|+.||||+++.... .+.+|++++.++ +|||||++++++.+.+. .++|||||++
T Consensus 27 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~--~~lv~E~~~g 100 (342)
T 2qr7_A 27 KEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKY--VYVVTELMKG 100 (342)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSE--EEEEECCCCS
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCE--EEEEEeCCCC
Confidence 568999999999999985 799999999965432 245688888887 79999999999987776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.+++...+.+++.
T Consensus 101 g~L~~~i~~~~~~~~~ 116 (342)
T 2qr7_A 101 GELLDKILRQKFFSER 116 (342)
T ss_dssp CBHHHHHHTCTTCCHH
T ss_pred CcHHHHHHHcCCCCHH
Confidence 9999999888777654
No 270
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.05 E-value=4.1e-10 Score=119.42 Aligned_cols=90 Identities=26% Similarity=0.346 Sum_probs=74.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+..+|+.||||++.... ....+.+.+|++++++++|||||++++++...+. .++|||||+
T Consensus 26 ~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~- 102 (311)
T 3niz_A 26 LEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERC--LTLVFEFME- 102 (311)
T ss_dssp EEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSC--EEEEEECCS-
T ss_pred hhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCE--EEEEEcCCC-
Confidence 67899999999999999889999999985432 2234678999999999999999999999987777 999999999
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.+++...+ .+++
T Consensus 103 ~~l~~~~~~~~~~~~~ 118 (311)
T 3niz_A 103 KDLKKVLDENKTGLQD 118 (311)
T ss_dssp EEHHHHHHTCTTCCCH
T ss_pred CCHHHHHHhccCCCCH
Confidence 58888887643 3544
No 271
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.04 E-value=4.2e-10 Score=130.57 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=74.9
Q ss_pred eeeeccCceEEEEEEC---CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATLD---SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.||+|+||.||+|++. ++..||||+++... ....++|.+|+++|.+++|||||+++++|.. +. .++|||||++
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~--~~lv~E~~~~ 419 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EA--LMLVMEMAGG 419 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SS--EEEEEECCTT
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CC--eEEEEEeCCC
Confidence 6999999999999863 56789999996542 3356789999999999999999999999976 44 8999999999
Q ss_pred CCHHHHHhcCC-Ccccc
Q 003307 815 QSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w~ 830 (832)
|+|.++++.++ .++|.
T Consensus 420 g~L~~~l~~~~~~l~~~ 436 (613)
T 2ozo_A 420 GPLHKFLVGKREEIPVS 436 (613)
T ss_dssp CBHHHHHTTCTTTSCHH
T ss_pred CcHHHHHhhccCCCCHH
Confidence 99999997643 46653
No 272
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.04 E-value=2.1e-10 Score=123.61 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||+||+|+.. +|+.||||+++... ....+.+..|.+++..+ +||+|+++++++...+. .++||||
T Consensus 25 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~--~~lv~E~ 102 (353)
T 2i0e_A 25 LMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR--LYFVMEY 102 (353)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCE--EEEEEeC
Confidence 678999999999999985 68999999985431 12346688999999988 89999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.+++.
T Consensus 103 ~~gg~L~~~l~~~~~~~~~ 121 (353)
T 2i0e_A 103 VNGGDLMYHIQQVGRFKEP 121 (353)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHHhcCCCCHH
Confidence 9999999999876666653
No 273
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.04 E-value=2.4e-10 Score=129.30 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=79.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++|||||++++++..... .++|||||+
T Consensus 27 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~~ 104 (486)
T 3mwu_A 27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSS--FYIVGELYT 104 (486)
T ss_dssp EEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCC
T ss_pred eEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCE--EEEEEEcCC
Confidence 578999999999999974 8999999998532 12235779999999999999999999999998776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.+++.
T Consensus 105 ~~~L~~~~~~~~~~~~~ 121 (486)
T 3mwu_A 105 GGELFDEIIKRKRFSEH 121 (486)
T ss_dssp SCBHHHHHHHHSSCCHH
T ss_pred CCcHHHHHHhcCCCCHH
Confidence 99999999877766653
No 274
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.04 E-value=3.2e-10 Score=118.68 Aligned_cols=90 Identities=28% Similarity=0.375 Sum_probs=77.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. ++..||||.+..... ..+.|.+|++++++++||||+++++++...+. .++||||+++|
T Consensus 18 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~~~~ 94 (288)
T 3kfa_A 18 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMTYG 94 (288)
T ss_dssp EEESGGGTTCSEEEEEEGGGTEEEEEEEECSCST-HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--EEEEEECCTTE
T ss_pred EeecCCCCceeEEEeEecCCCEEEEEEecCcCHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC--EEEEEEcCCCC
Confidence 678999999999999985 689999999965432 45779999999999999999999999988777 99999999999
Q ss_pred CHHHHHhcCC--Cccc
Q 003307 816 SLAVYLQGKG--LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~--~l~w 829 (832)
+|.++++... .++|
T Consensus 95 ~L~~~~~~~~~~~~~~ 110 (288)
T 3kfa_A 95 NLLDYLRECNRQEVSA 110 (288)
T ss_dssp EHHHHHHHCCTTTSCH
T ss_pred cHHHHHHhcccCCccH
Confidence 9999998643 3554
No 275
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.04 E-value=2.6e-10 Score=130.34 Aligned_cols=89 Identities=21% Similarity=0.452 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..++..||||+++.... ..++|.+|+++|.+++|||||+++++|.. +. .++|||||++|+
T Consensus 272 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~--~~lv~e~~~~gs 347 (535)
T 2h8h_A 272 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP--IYIVTEYMSKGS 347 (535)
T ss_dssp EEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS--CEEEECCCTTEE
T ss_pred heecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-cc--ceEeeehhcCCc
Confidence 668999999999999998778899999975432 35789999999999999999999999975 44 899999999999
Q ss_pred HHHHHhcC--CCccc
Q 003307 817 LAVYLQGK--GLVLW 829 (832)
Q Consensus 817 L~~~l~~~--~~l~w 829 (832)
|.++|+.. ..++|
T Consensus 348 L~~~l~~~~~~~l~~ 362 (535)
T 2h8h_A 348 LLDFLKGETGKYLRL 362 (535)
T ss_dssp HHHHHSHHHHTTCCH
T ss_pred HHHHHhhcCCCCCCH
Confidence 99999743 33544
No 276
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.04 E-value=3e-10 Score=118.76 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. ++..||||++.... ....+.+.+|++++.+++||||+++++++...+. .++||||+
T Consensus 19 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 96 (284)
T 2vgo_A 19 GRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKR--IYLMLEFA 96 (284)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred eheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCE--EEEEEEeC
Confidence 678999999999999985 78899999985321 1234679999999999999999999999987766 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 97 ~~~~L~~~l~~~~~~~~ 113 (284)
T 2vgo_A 97 PRGELYKELQKHGRFDE 113 (284)
T ss_dssp TTEEHHHHHHHHSSCCH
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 99999999987666654
No 277
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.04 E-value=1.4e-10 Score=128.47 Aligned_cols=91 Identities=12% Similarity=0.235 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--------hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--------AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--------~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~l 807 (832)
.+.||+|+||.||+|.. .+|+.||||++.... ......|.+|++++.+++|||||++++++.. +. .++
T Consensus 140 ~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~~--~~l 216 (419)
T 3i6u_A 140 SKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-ED--YYI 216 (419)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-SE--EEE
T ss_pred EeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-Cc--eEE
Confidence 56799999999999997 478999999985321 1112348899999999999999999999864 33 799
Q ss_pred EEecCCCCCHHHHHhcCCCcccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
|||||++|+|.+++...+.++|.
T Consensus 217 v~e~~~~g~L~~~l~~~~~~~~~ 239 (419)
T 3i6u_A 217 VLELMEGGELFDKVVGNKRLKEA 239 (419)
T ss_dssp EEECCTTCBGGGGTSSSCCCCHH
T ss_pred EEEcCCCCcHHHHHhccCCCCHH
Confidence 99999999999999887777653
No 278
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.03 E-value=4.3e-10 Score=122.14 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh--------hhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA--------KGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--------~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
.+.||+|+||.||+|+.. +|+.||||+++.... ...+.+.+|++++.++ +||||+++++++..... .+
T Consensus 99 ~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~--~~ 176 (365)
T 2y7j_A 99 KDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSF--MF 176 (365)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSE--EE
T ss_pred ceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCE--EE
Confidence 578999999999999985 899999999854321 1245688999999999 79999999999987776 99
Q ss_pred EEEecCCCCCHHHHHhcCCCcccc
Q 003307 807 VISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
+|||||++|+|.+++.....++|.
T Consensus 177 lv~e~~~g~~L~~~l~~~~~l~~~ 200 (365)
T 2y7j_A 177 LVFDLMRKGELFDYLTEKVALSEK 200 (365)
T ss_dssp EEECCCTTCBHHHHHHHHSSCCHH
T ss_pred EEEEeCCCCcHHHHHHhcCCCCHH
Confidence 999999999999999876666653
No 279
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.03 E-value=4.7e-10 Score=121.91 Aligned_cols=89 Identities=10% Similarity=0.103 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEE------ECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC---CCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKAT------LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIK---HPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~------~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~---H~niv~l~g~~~~~~~~~~~l 807 (832)
.+.||+|+||.||+|+ ..+|+.||||+++... ..+|..|++++.+++ |+||+++++++...+. .++
T Consensus 70 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~--~~l 144 (365)
T 3e7e_A 70 HHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNG--SVL 144 (365)
T ss_dssp EEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSC--EEE
T ss_pred EEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCC--cEE
Confidence 6789999999999994 3578999999996543 457888888888887 9999999999998887 999
Q ss_pred EEecCCCCCHHHHHhc-----CCCcccc
Q 003307 808 ISNYINAQSLAVYLQG-----KGLVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~-----~~~l~w~ 830 (832)
|||||++|+|.++++. .+.++|.
T Consensus 145 v~e~~~~g~L~~~l~~~~~~~~~~l~~~ 172 (365)
T 3e7e_A 145 VGELYSYGTLLNAINLYKNTPEKVMPQG 172 (365)
T ss_dssp EECCCCSCBHHHHHHHHHTSTTCSCCHH
T ss_pred EEeccCCCcHHHHHHHhhcccccCCCHH
Confidence 9999999999999974 4456653
No 280
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.03 E-value=3.5e-10 Score=117.24 Aligned_cols=89 Identities=26% Similarity=0.390 Sum_probs=71.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. |..||||+++... ....+.+.+|++++.+++||||++++++|...+. .++||||+
T Consensus 12 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 88 (271)
T 3dtc_A 12 EEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPN--LCLVMEFA 88 (271)
T ss_dssp EEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC----CEEEEECC
T ss_pred eeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCc--eEEEEEcC
Confidence 678999999999999974 8999999985432 2234679999999999999999999999988776 89999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++++ .+++
T Consensus 89 ~~~~L~~~~~~~-~~~~ 104 (271)
T 3dtc_A 89 RGGPLNRVLSGK-RIPP 104 (271)
T ss_dssp TTEEHHHHHTSS-CCCH
T ss_pred CCCCHHHHhhcC-CCCH
Confidence 999999998643 4444
No 281
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.03 E-value=7.4e-10 Score=117.32 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|+.||||+++.. .....+.|.+|++++.+++||||+++++++...+. .++||||+
T Consensus 37 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 114 (310)
T 2wqm_A 37 EKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNE--LNIVLELA 114 (310)
T ss_dssp EEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred EEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCc--EEEEEecC
Confidence 67899999999999997 58999999998642 23445779999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhc
Q 003307 813 NAQSLAVYLQG 823 (832)
Q Consensus 813 ~~GsL~~~l~~ 823 (832)
++|+|.+++..
T Consensus 115 ~~~~L~~~l~~ 125 (310)
T 2wqm_A 115 DAGDLSRMIKH 125 (310)
T ss_dssp CSCBHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 99999999864
No 282
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.03 E-value=5.2e-10 Score=117.10 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=78.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||+++++++...+. .++|+||++
T Consensus 27 ~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 104 (287)
T 2wei_A 27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSS--FYIVGELYT 104 (287)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCCC
T ss_pred eEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCe--EEEEEEccC
Confidence 678999999999999985 7999999998532 22346779999999999999999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.+++...+.+++
T Consensus 105 ~~~L~~~l~~~~~~~~ 120 (287)
T 2wei_A 105 GGELFDEIIKRKRFSE 120 (287)
T ss_dssp SCBHHHHHHHHSSCCH
T ss_pred CCCHHHHHHhcCCCCH
Confidence 9999999987666665
No 283
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.03 E-value=5.5e-10 Score=117.26 Aligned_cols=90 Identities=27% Similarity=0.334 Sum_probs=73.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+.. +|+.||||+++.. .....+.+.+|++++.+++|||||++++++...+. .++|||||+
T Consensus 7 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~ 84 (292)
T 3o0g_A 7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK--LTLVFEFCD 84 (292)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred eeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCE--EEEEEecCC
Confidence 567999999999999984 7999999998543 23345778999999999999999999999988776 999999999
Q ss_pred CCCHHHHHh-cCCCccc
Q 003307 814 AQSLAVYLQ-GKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~-~~~~l~w 829 (832)
+ ++.+.+. ..+.+++
T Consensus 85 ~-~l~~~~~~~~~~l~~ 100 (292)
T 3o0g_A 85 Q-DLKKYFDSCNGDLDP 100 (292)
T ss_dssp E-EHHHHHHHTTTCCCH
T ss_pred C-CHHHHHHhCCCCCCH
Confidence 6 5555554 3455554
No 284
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.03 E-value=2.7e-10 Score=118.46 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=78.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+.. +|+.||||+++.. .....+.+.+|++++.+++||||+++++++...+. .++|+||+++
T Consensus 12 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 89 (276)
T 2yex_A 12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNI--QYLFLEYCSG 89 (276)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECCTT
T ss_pred EEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCE--EEEEEEecCC
Confidence 568999999999999985 8999999998543 23345779999999999999999999999987776 8999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.+++.....+++
T Consensus 90 ~~L~~~l~~~~~~~~ 104 (276)
T 2yex_A 90 GELFDRIEPDIGMPE 104 (276)
T ss_dssp EEGGGGSBTTTBCCH
T ss_pred CcHHHHHhhccCCCH
Confidence 999999887666654
No 285
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.02 E-value=4.3e-10 Score=120.40 Aligned_cols=92 Identities=23% Similarity=0.249 Sum_probs=78.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||++++++|...+. .++||||++
T Consensus 30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~ 107 (331)
T 4aaa_A 30 LGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKR--WYLVFEFVD 107 (331)
T ss_dssp EEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred eeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCE--EEEEEecCC
Confidence 678999999999999985 7999999988543 23335668899999999999999999999988776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.++|.
T Consensus 108 ~~~l~~~~~~~~~~~~~ 124 (331)
T 4aaa_A 108 HTILDDLELFPNGLDYQ 124 (331)
T ss_dssp EEHHHHHHHSTTCCCHH
T ss_pred cchHHHHHhhccCCCHH
Confidence 99999988776666653
No 286
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.02 E-value=3.9e-10 Score=117.48 Aligned_cols=84 Identities=23% Similarity=0.382 Sum_probs=73.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..++..||||++..... ..+.|.+|++++.+++||||+++++++.. +. .++||||+++|+
T Consensus 18 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~--~~~v~e~~~~~~ 93 (279)
T 1qpc_A 18 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EP--IYIITEYMENGS 93 (279)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS--CEEEEECCTTCB
T ss_pred eeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEcC-CC--cEEEEecCCCCC
Confidence 678999999999999988888999999965432 35779999999999999999999999864 34 799999999999
Q ss_pred HHHHHhcC
Q 003307 817 LAVYLQGK 824 (832)
Q Consensus 817 L~~~l~~~ 824 (832)
|.++++..
T Consensus 94 L~~~l~~~ 101 (279)
T 1qpc_A 94 LVDFLKTP 101 (279)
T ss_dssp HHHHTTSH
T ss_pred HHHHHhcC
Confidence 99998753
No 287
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.01 E-value=6.5e-10 Score=119.08 Aligned_cols=91 Identities=30% Similarity=0.495 Sum_probs=75.8
Q ss_pred cCeeeeccCceEEEEEEC-C----CCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-S----GSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~----g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+.. + +..||||.++.. .......|.+|++++.+++||||+++++++...+. .++|||
T Consensus 49 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e 126 (333)
T 1mqb_A 49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP--MMIITE 126 (333)
T ss_dssp EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--EEEEEE
T ss_pred ccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCC--cEEEEe
Confidence 578999999999999863 2 246999999654 33345679999999999999999999999987777 999999
Q ss_pred cCCCCCHHHHHhcC-CCccc
Q 003307 811 YINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w 829 (832)
|+++|+|.++++.. ..++|
T Consensus 127 ~~~~~~L~~~l~~~~~~~~~ 146 (333)
T 1mqb_A 127 YMENGALDKFLREKDGEFSV 146 (333)
T ss_dssp CCTTEEHHHHHHHTTTCSCH
T ss_pred CCCCCcHHHHHHhCCCCCCH
Confidence 99999999999865 44554
No 288
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.01 E-value=4e-10 Score=121.36 Aligned_cols=87 Identities=26% Similarity=0.358 Sum_probs=72.9
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+. .++..||||.+.... ....+.+.+|++++.++ +||||++++++|...+. .++|
T Consensus 50 ~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~--~~lv 127 (344)
T 1rjb_A 50 GKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP--IYLI 127 (344)
T ss_dssp EEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEE
T ss_pred eeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCc--cEEE
Confidence 67899999999999995 245689999996432 23346799999999999 89999999999988777 9999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
|||+++|+|.++++..+
T Consensus 128 ~e~~~~g~L~~~l~~~~ 144 (344)
T 1rjb_A 128 FEYCCYGDLLNYLRSKR 144 (344)
T ss_dssp EECCTTCBHHHHHHTTT
T ss_pred EecCCCCcHHHHHhhcc
Confidence 99999999999998653
No 289
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.01 E-value=7.6e-10 Score=115.45 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. .+..||||+++.. .....+.|.+|++++.+++||||+++++++.. +. .++||||
T Consensus 20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~--~~lv~e~ 96 (281)
T 1mp8_A 20 GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NP--VWIIMEL 96 (281)
T ss_dssp EEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-SS--CEEEEEC
T ss_pred EeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEcc-Cc--cEEEEec
Confidence 678999999999999873 3457999998653 33445779999999999999999999999853 44 7999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++.++ .++|
T Consensus 97 ~~~~~L~~~l~~~~~~~~~ 115 (281)
T 1mp8_A 97 CTLGELRSFLQVRKYSLDL 115 (281)
T ss_dssp CTTEEHHHHHHHTTTTSCH
T ss_pred CCCCCHHHHHHhcCCCCCH
Confidence 99999999998654 4554
No 290
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.01 E-value=2.7e-10 Score=123.80 Aligned_cols=91 Identities=30% Similarity=0.349 Sum_probs=68.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHH-HhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKK-LGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~-l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||+||+|+.. +|+.||||+++... ....+.+.+|..+ +..++|||||++++++...+. .++||||
T Consensus 43 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~--~~lv~E~ 120 (373)
T 2r5t_A 43 LKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADK--LYFVLDY 120 (373)
T ss_dssp EEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred EEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCE--EEEEEeC
Confidence 678999999999999985 78999999995432 2233456777776 577899999999999998776 9999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
|++|+|.++++..+.+++
T Consensus 121 ~~gg~L~~~l~~~~~~~~ 138 (373)
T 2r5t_A 121 INGGELFYHLQRERCFLE 138 (373)
T ss_dssp CCSCBHHHHHHHHSSCCH
T ss_pred CCCCcHHHHHHhcCCCCH
Confidence 999999999987666654
No 291
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.01 E-value=7.2e-10 Score=115.18 Aligned_cols=91 Identities=16% Similarity=0.285 Sum_probs=68.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++||||+++++++...+. .++||||+
T Consensus 18 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 95 (275)
T 2eue_A 18 VKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDE--IIMVIEYA 95 (275)
T ss_dssp CC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSC--EEEEEECC
T ss_pred EEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCe--EEEEehhc
Confidence 67899999999999996 489999999986432 2235678999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.++|.
T Consensus 96 -~~~l~~~~~~~~~~~~~ 112 (275)
T 2eue_A 96 -GNELFDYIVQRDKMSEQ 112 (275)
T ss_dssp -CEEHHHHHHTSSSCCHH
T ss_pred -CCcHHHHHHhcCCCCHH
Confidence 67999998887776653
No 292
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.01 E-value=4.2e-10 Score=120.37 Aligned_cols=91 Identities=23% Similarity=0.282 Sum_probs=75.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+. .+|+.||||+++.... ...+.+.+|++++++++|||||++++++...+. .++||||++
T Consensus 39 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~ 116 (329)
T 3gbz_A 39 ITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHR--LHLIFEYAE 116 (329)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred EEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCE--EEEEEecCC
Confidence 67899999999999997 4899999999964322 234568899999999999999999999988777 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
|+|.+++...+.+++.
T Consensus 117 -~~L~~~~~~~~~~~~~ 132 (329)
T 3gbz_A 117 -NDLKKYMDKNPDVSMR 132 (329)
T ss_dssp -EEHHHHHHHCTTCCHH
T ss_pred -CCHHHHHhhcCCCCHH
Confidence 5999999887776653
No 293
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.01 E-value=5.4e-10 Score=119.08 Aligned_cols=85 Identities=21% Similarity=0.369 Sum_probs=73.8
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +++.||||.+... .......|.+|++++.+++||||+++++++...+. .++||
T Consensus 30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~ 107 (322)
T 1p4o_A 30 SRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP--TLVIM 107 (322)
T ss_dssp EEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCc--cEEEE
Confidence 678999999999999853 4788999999644 33345679999999999999999999999987777 89999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||+++|+|.++++.
T Consensus 108 e~~~~~~L~~~l~~ 121 (322)
T 1p4o_A 108 ELMTRGDLKSYLRS 121 (322)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred EeCCCCcHHHHHHH
Confidence 99999999999975
No 294
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.01 E-value=5.4e-10 Score=119.44 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=72.6
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+. .+|..||||++... ......+|.+|++++.+++||||+++++++...+. .++||
T Consensus 35 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~ 112 (327)
T 2yfx_A 35 IRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP--RFILM 112 (327)
T ss_dssp EEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred EEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC--cEEEE
Confidence 57899999999999983 36789999999643 34456789999999999999999999999988777 89999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
||+++|+|.++++..+
T Consensus 113 e~~~~~~L~~~l~~~~ 128 (327)
T 2yfx_A 113 ELMAGGDLKSFLRETR 128 (327)
T ss_dssp ECCTTEEHHHHHHHTS
T ss_pred ecCCCCcHHHHHHhhc
Confidence 9999999999998654
No 295
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.00 E-value=1e-09 Score=115.45 Aligned_cols=92 Identities=23% Similarity=0.334 Sum_probs=75.0
Q ss_pred cCeeeeccCceEEEEEE-CCC---CEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSG---SILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g---~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
++.||+|+||.||+|+. .++ ..||||++... .....+.|.+|++++++++|||||++++++...+. ..++|+||
T Consensus 26 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~~v~e~ 104 (298)
T 3pls_A 26 DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEG-LPHVLLPY 104 (298)
T ss_dssp EEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS-CCEEEECC
T ss_pred CceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCC-CcEEEEec
Confidence 67899999999999986 233 37999998653 33445789999999999999999999999976654 24899999
Q ss_pred CCCCCHHHHHhcC-CCccc
Q 003307 812 INAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w 829 (832)
+++|+|.++++.. +.++|
T Consensus 105 ~~~~~L~~~~~~~~~~~~~ 123 (298)
T 3pls_A 105 MCHGDLLQFIRSPQRNPTV 123 (298)
T ss_dssp CTTCBHHHHHHCTTCCCBH
T ss_pred ccCCCHHHHHhccccCCCH
Confidence 9999999999863 34554
No 296
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.00 E-value=7.1e-10 Score=116.33 Aligned_cols=89 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred eeeeccCceEEEEEE---CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATL---DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~---~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.||+|+||.||+|.. .+++.||||+++... ....++|.+|++++.+++||||+++++++. .+. .++||||++
T Consensus 24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~--~~lv~e~~~ 100 (291)
T 1xbb_A 24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AES--WMLVMEMAE 100 (291)
T ss_dssp EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-SSS--EEEEEECCT
T ss_pred ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC-CCC--cEEEEEeCC
Confidence 899999999999964 357899999986432 223577999999999999999999999994 344 899999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.++++..+.+++.
T Consensus 101 ~~~L~~~l~~~~~~~~~ 117 (291)
T 1xbb_A 101 LGPLNKYLQQNRHVKDK 117 (291)
T ss_dssp TEEHHHHHHHCTTCCHH
T ss_pred CCCHHHHHHhCcCCCHH
Confidence 99999999987766653
No 297
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.00 E-value=2.9e-10 Score=119.79 Aligned_cols=86 Identities=20% Similarity=0.256 Sum_probs=67.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--------------------------hhHHHHHHHHHHHhcCCCCc
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--------------------------KGKKEFAREVKKLGNIKHPN 789 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--------------------------~~~~~f~~e~~~l~~~~H~n 789 (832)
.+.||+|+||.||+|+. .+|+.||||++..... ...+.|.+|++++++++|||
T Consensus 18 ~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 97 (298)
T 2zv2_A 18 KDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPN 97 (298)
T ss_dssp EEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTT
T ss_pred EeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCC
Confidence 67899999999999997 4789999999854321 11246899999999999999
Q ss_pred ceeeeeEEECCCCceEEEEEecCCCCCHHHHHh
Q 003307 790 LVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822 (832)
Q Consensus 790 iv~l~g~~~~~~~~~~~lv~e~~~~GsL~~~l~ 822 (832)
|+++++++........++||||+++|+|.+++.
T Consensus 98 iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~ 130 (298)
T 2zv2_A 98 VVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT 130 (298)
T ss_dssp BCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh
Confidence 999999998744335899999999999987543
No 298
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.00 E-value=1e-09 Score=114.83 Aligned_cols=90 Identities=19% Similarity=0.299 Sum_probs=74.8
Q ss_pred cCeeeeccCceEEEEEEC---CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD---SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
+..||+|+||.||+|+.. ++..||||+++.. .....+.+.+|++++.+++||||+++++++. .+. .++||||+
T Consensus 15 ~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~--~~lv~e~~ 91 (287)
T 1u59_A 15 DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEA--LMLVMEMA 91 (287)
T ss_dssp EEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSS--EEEEEECC
T ss_pred hccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-CCC--cEEEEEeC
Confidence 347999999999999863 6788999999654 3345678999999999999999999999995 344 89999999
Q ss_pred CCCCHHHHHhcC-CCccc
Q 003307 813 NAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~-~~l~w 829 (832)
++|+|.+++..+ ..++|
T Consensus 92 ~~~~L~~~l~~~~~~~~~ 109 (287)
T 1u59_A 92 GGGPLHKFLVGKREEIPV 109 (287)
T ss_dssp TTEEHHHHHTTCTTTSCH
T ss_pred CCCCHHHHHHhCCccCCH
Confidence 999999999754 34554
No 299
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.00 E-value=8.4e-10 Score=117.91 Aligned_cols=91 Identities=24% Similarity=0.371 Sum_probs=69.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCE----EEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSI----LAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~----vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+. .+|+. ||+|.++.. .....++|.+|++++++++|||||+++++|.... .++|+|
T Consensus 20 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~v~e 96 (327)
T 3poz_A 20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST---VQLITQ 96 (327)
T ss_dssp EEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS---EEEEEE
T ss_pred ceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC---eEEEEE
Confidence 67899999999999996 35554 588887543 2334678999999999999999999999998644 789999
Q ss_pred cCCCCCHHHHHhcC-CCcccc
Q 003307 811 YINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w~ 830 (832)
||++|+|.++++.. ..++|.
T Consensus 97 ~~~~g~L~~~l~~~~~~~~~~ 117 (327)
T 3poz_A 97 LMPFGCLLDYVREHKDNIGSQ 117 (327)
T ss_dssp CCTTCBHHHHHHHSTTSCCHH
T ss_pred ecCCCcHHHHHHhcCCCCCHH
Confidence 99999999999874 455553
No 300
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.00 E-value=7e-10 Score=117.01 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=70.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhc--CCCCcceeeeeEEECCCCc--eEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGN--IKHPNLVSLQGYYWGPKEH--EKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~--~~H~niv~l~g~~~~~~~~--~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. +|+.||||++... ..+.+.+|.+++.. ++||||+++++++...... ..++|||||
T Consensus 8 ~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~ 83 (303)
T 3gxj_A 8 QESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYH 83 (303)
T ss_dssp CEEEEECSSSEEEEC-C-TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEEEEECC
T ss_pred hhhccCCCCeEEEEEEE-cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeEEEEecc
Confidence 67899999999999987 4899999998643 34567888888887 7999999999999876521 389999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++.. .++|
T Consensus 84 ~~g~L~~~l~~~-~~~~ 99 (303)
T 3gxj_A 84 EHGSLFDYLNRY-TVTV 99 (303)
T ss_dssp TTCCHHHHHHHC-CBCC
T ss_pred CCCCHHHHHhcc-Ccch
Confidence 999999999754 3443
No 301
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.00 E-value=6.7e-10 Score=116.33 Aligned_cols=90 Identities=26% Similarity=0.302 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+..+|+.||||++..... ...+.+.+|++++.+++|||||++++++...+. .++||||+++
T Consensus 7 ~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 84 (288)
T 1ob3_A 7 LEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKR--LVLVFEHLDQ 84 (288)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSC--EEEEEECCSE
T ss_pred hhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCe--EEEEEEecCC
Confidence 567999999999999988899999999854322 224678899999999999999999999998777 9999999995
Q ss_pred CCHHHHHhcC-CCccc
Q 003307 815 QSLAVYLQGK-GLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w 829 (832)
+|.+++... +.+++
T Consensus 85 -~l~~~~~~~~~~~~~ 99 (288)
T 1ob3_A 85 -DLKKLLDVCEGGLES 99 (288)
T ss_dssp -EHHHHHHTSTTCCCH
T ss_pred -CHHHHHHhcccCCCH
Confidence 999998754 44444
No 302
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.00 E-value=7.5e-10 Score=119.27 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=75.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ....+.|.+|++++.+++|||||+++++|...+. .++|||||
T Consensus 59 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~ 136 (348)
T 1u5q_A 59 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHT--AWLVMEYC 136 (348)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred eeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCe--EEEEEecC
Confidence 56799999999999997 589999999985432 2234679999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhc-CCCcccc
Q 003307 813 NAQSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w~ 830 (832)
+ |+|.+++.. ++.++|.
T Consensus 137 ~-g~l~~~l~~~~~~l~~~ 154 (348)
T 1u5q_A 137 L-GSASDLLEVHKKPLQEV 154 (348)
T ss_dssp S-EEHHHHHHHHTSCCCHH
T ss_pred C-CCHHHHHHHhcCCCCHH
Confidence 8 789888863 4456553
No 303
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=98.99 E-value=5e-10 Score=119.39 Aligned_cols=90 Identities=12% Similarity=0.221 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh--------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA--------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~l 807 (832)
...||+|+||.||+|+.. +|+.||||.+..... .....|.+|++++.+++||||+++++++... . .++
T Consensus 15 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~--~~l 91 (322)
T 2ycf_A 15 SKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE-D--YYI 91 (322)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS-S--EEE
T ss_pred eeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC-c--eEE
Confidence 678999999999999974 789999999854311 1234588999999999999999999998754 3 799
Q ss_pred EEecCCCCCHHHHHhcCCCccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w 829 (832)
||||+++|+|.+++...+.+++
T Consensus 92 v~e~~~~~~L~~~~~~~~~~~~ 113 (322)
T 2ycf_A 92 VLELMEGGELFDKVVGNKRLKE 113 (322)
T ss_dssp EEECCTTEETHHHHSTTCCCCH
T ss_pred EEecCCCCcHHHHHhccCCCCH
Confidence 9999999999999987776665
No 304
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=98.99 E-value=7.4e-10 Score=125.58 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
..+||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++.+++|||||++++++...+. .++|||||
T Consensus 190 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~--l~lVmE~~ 267 (543)
T 3c4z_A 190 FRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTD--LCLVMTIM 267 (543)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCE--EEEEEEec
Confidence 467999999999999984 79999999995432 1234678999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 268 ~gg~L~~~l~~~ 279 (543)
T 3c4z_A 268 NGGDIRYHIYNV 279 (543)
T ss_dssp TTCBHHHHHHTS
T ss_pred cCCCHHHHHHHh
Confidence 999999999764
No 305
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=98.99 E-value=5.1e-10 Score=119.38 Aligned_cols=87 Identities=23% Similarity=0.415 Sum_probs=67.6
Q ss_pred cCeeeeccCceEEEEEEC-CCC---EEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc----eEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGS---ILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH----EKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~---~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~----~~~ 806 (832)
.+.||+|+||.||+|+.. ++. .||||+++.. .....+.|.+|++++.+++||||+++++++...+.. ..+
T Consensus 28 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 107 (323)
T 3qup_A 28 GRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPM 107 (323)
T ss_dssp EEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEE
T ss_pred eceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCccE
Confidence 678999999999999974 333 8999998643 233467899999999999999999999999876541 129
Q ss_pred EEEecCCCCCHHHHHhc
Q 003307 807 VISNYINAQSLAVYLQG 823 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~ 823 (832)
+||||+++|+|.+++..
T Consensus 108 ~v~e~~~~~~L~~~l~~ 124 (323)
T 3qup_A 108 VILPFMKHGDLHAFLLA 124 (323)
T ss_dssp EEEECCTTCBHHHHHHH
T ss_pred EEEEeccCCcHHHHHHh
Confidence 99999999999999964
No 306
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=98.98 E-value=7.2e-10 Score=117.85 Aligned_cols=84 Identities=20% Similarity=0.353 Sum_probs=64.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++|||||++++++...+. .++|||||+
T Consensus 10 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~- 86 (317)
T 2pmi_A 10 LEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENK--LTLVFEFMD- 86 (317)
T ss_dssp ---------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTE--EEEEEECCC-
T ss_pred eeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCe--EEEEEEecC-
Confidence 568999999999999974 79999999986432 2234678899999999999999999999987776 999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.+++..
T Consensus 87 ~~L~~~l~~ 95 (317)
T 2pmi_A 87 NDLKKYMDS 95 (317)
T ss_dssp CBHHHHHHH
T ss_pred CCHHHHHHh
Confidence 699999864
No 307
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=98.98 E-value=1.2e-09 Score=115.03 Aligned_cols=92 Identities=27% Similarity=0.338 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEEC--C--CCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD--S--GSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~--g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. + +..||||.+... .....+.|.+|++++++++||||++++++|...+. ..++||||
T Consensus 30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~~v~e~ 108 (298)
T 3f66_A 30 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPLVVLPY 108 (298)
T ss_dssp EEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS-CCEEEEEC
T ss_pred cceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCC-ceEEEEeC
Confidence 678999999999999863 2 236899998653 33445779999999999999999999999765442 38999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++... .+++
T Consensus 109 ~~~~~L~~~l~~~~~~~~~ 127 (298)
T 3f66_A 109 MKHGDLRNFIRNETHNPTV 127 (298)
T ss_dssp CTTCBHHHHHHCTTCCCCH
T ss_pred CCCCCHHHHHHhcccCCCH
Confidence 99999999997643 3444
No 308
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=98.98 E-value=1.2e-09 Score=115.19 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=76.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++.+++||||+++++++...+. .++||||+++
T Consensus 27 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 104 (303)
T 3a7i_A 27 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTK--LWIIMEYLGG 104 (303)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCTT
T ss_pred hhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCe--EEEEEEeCCC
Confidence 56799999999999997 479999999985432 3345789999999999999999999999988776 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.+++.. +.++|
T Consensus 105 ~~L~~~~~~-~~~~~ 118 (303)
T 3a7i_A 105 GSALDLLEP-GPLDE 118 (303)
T ss_dssp EEHHHHHTT-SCCCH
T ss_pred CcHHHHHhc-CCCCH
Confidence 999999875 34444
No 309
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=98.98 E-value=8.6e-10 Score=117.82 Aligned_cols=87 Identities=26% Similarity=0.431 Sum_probs=72.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEE--EEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSIL--AVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~v--AvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. +|..+ |||+++.. .....+.+.+|++++.++ +||||+++++++...+. .++||||
T Consensus 30 ~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~--~~lv~e~ 107 (327)
T 1fvr_A 30 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGY--LYLAIEY 107 (327)
T ss_dssp EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTE--EEEEECC
T ss_pred eeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCc--eEEEEec
Confidence 678999999999999974 67654 99988643 233456799999999999 99999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCC
Q 003307 812 INAQSLAVYLQGKG 825 (832)
Q Consensus 812 ~~~GsL~~~l~~~~ 825 (832)
+++|+|.++++..+
T Consensus 108 ~~~~~L~~~l~~~~ 121 (327)
T 1fvr_A 108 APHGNLLDFLRKSR 121 (327)
T ss_dssp CTTCBHHHHHHTTC
T ss_pred CCCCCHHHHHHhcc
Confidence 99999999998764
No 310
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=98.98 E-value=9.7e-10 Score=122.20 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=77.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++++++|||||++++++..... ...++|||
T Consensus 31 ~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e 110 (432)
T 3n9x_A 31 KHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLE 110 (432)
T ss_dssp EEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEE
T ss_pred EEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEe
Confidence 678999999999999974 7899999999643 33345779999999999999999999999876531 23899999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+ |+|.++++....+++.
T Consensus 111 ~~~-~~L~~~~~~~~~l~~~ 129 (432)
T 3n9x_A 111 IAD-SDLKKLFKTPIFLTEE 129 (432)
T ss_dssp CCS-EEHHHHHHSSCCCCHH
T ss_pred cCC-cCHHHHHhccCCCCHH
Confidence 998 6999999987777664
No 311
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=98.97 E-value=3.3e-10 Score=121.48 Aligned_cols=92 Identities=11% Similarity=0.141 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~l 807 (832)
...||+|+||.||+|+. .+|+.||||+++.... ...+.+.+|++++.+++|||||+++++|...+. .++
T Consensus 29 ~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~--~~l 106 (335)
T 3dls_A 29 MSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGF--FQL 106 (335)
T ss_dssp EEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSE--EEE
T ss_pred EeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCE--EEE
Confidence 57899999999999997 4899999999854321 123457889999999999999999999987776 999
Q ss_pred EEecCCCC-CHHHHHhcCCCcccc
Q 003307 808 ISNYINAQ-SLAVYLQGKGLVLWF 830 (832)
Q Consensus 808 v~e~~~~G-sL~~~l~~~~~l~w~ 830 (832)
||||+.+| +|.+++...+.++|.
T Consensus 107 v~e~~~~g~~l~~~~~~~~~l~~~ 130 (335)
T 3dls_A 107 VMEKHGSGLDLFAFIDRHPRLDEP 130 (335)
T ss_dssp EEECCTTSCBHHHHHHTCCCCCHH
T ss_pred EEEeCCCCccHHHHHHhcCCCCHH
Confidence 99999887 999999988777764
No 312
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=98.97 E-value=9.3e-10 Score=118.42 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCC--CcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKH--PNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H--~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|...+|+.||||++... .....+.|.+|++++.+++| +||+++++++...+. .++||| +
T Consensus 14 ~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~--~~lv~e-~ 90 (343)
T 3dbq_A 14 LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY--IYMVME-C 90 (343)
T ss_dssp EEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEEC-C
T ss_pred EEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCE--EEEEEe-C
Confidence 6789999999999999888999999998543 33445779999999999987 999999999998776 999999 5
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
.+|+|.++++..+.++|.
T Consensus 91 ~~~~L~~~l~~~~~~~~~ 108 (343)
T 3dbq_A 91 GNIDLNSWLKKKKSIDPW 108 (343)
T ss_dssp CSEEHHHHHHHSCCCCHH
T ss_pred CCCCHHHHHHhcCCCCHH
Confidence 678999999988777653
No 313
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=98.97 E-value=1.8e-10 Score=124.24 Aligned_cols=81 Identities=14% Similarity=0.282 Sum_probs=71.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChh-----------------hHHHHHHHHHHHhcCCCCcceeeeeEEEC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAK-----------------GKKEFAREVKKLGNIKHPNLVSLQGYYWG 799 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~-----------------~~~~f~~e~~~l~~~~H~niv~l~g~~~~ 799 (832)
...||+|+||.||+|+. +|+.||||++...... ..+.|.+|++++.+++||||+++++++..
T Consensus 36 ~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 114 (348)
T 2pml_X 36 IRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITN 114 (348)
T ss_dssp EEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEES
T ss_pred EEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEee
Confidence 67899999999999999 8999999998532111 11789999999999999999999999998
Q ss_pred CCCceEEEEEecCCCCCHHHH
Q 003307 800 PKEHEKLVISNYINAQSLAVY 820 (832)
Q Consensus 800 ~~~~~~~lv~e~~~~GsL~~~ 820 (832)
.+. .++||||+++|+|.++
T Consensus 115 ~~~--~~lv~e~~~~~~L~~~ 133 (348)
T 2pml_X 115 YDE--VYIIYEYMENDSILKF 133 (348)
T ss_dssp SSE--EEEEEECCTTCBSSEE
T ss_pred CCe--EEEEEeccCCCcHHHH
Confidence 776 9999999999999998
No 314
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=98.97 E-value=1.1e-09 Score=115.31 Aligned_cols=88 Identities=17% Similarity=0.278 Sum_probs=73.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC-----------Cce
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK-----------EHE 804 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~-----------~~~ 804 (832)
...||+|+||.||+|+. .+|+.||||++... ....+.+.+|++++.+++||||++++++|.... ...
T Consensus 11 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (303)
T 1zy4_A 11 IAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKST 89 (303)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEE
T ss_pred hheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCc
Confidence 57899999999999997 48999999998543 234577999999999999999999999986531 224
Q ss_pred EEEEEecCCCCCHHHHHhcCC
Q 003307 805 KLVISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 805 ~~lv~e~~~~GsL~~~l~~~~ 825 (832)
.++||||+++|+|.++++..+
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~ 110 (303)
T 1zy4_A 90 LFIQMEYCENGTLYDLIHSEN 110 (303)
T ss_dssp EEEEEECCCSCBHHHHHHHSC
T ss_pred eEEEEecCCCCCHHHhhhccc
Confidence 899999999999999998543
No 315
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=98.96 E-value=1.1e-09 Score=116.32 Aligned_cols=89 Identities=21% Similarity=0.388 Sum_probs=72.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|+.||||.+.... ..+++.+|++++.+++||||+++++++...+. .++||||+++|
T Consensus 34 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 109 (314)
T 3com_A 34 LEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTD--LWIVMEYCGAG 109 (314)
T ss_dssp EEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECCTTE
T ss_pred heeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCE--EEEEeecCCCC
Confidence 567999999999999985 79999999986432 23678999999999999999999999987776 99999999999
Q ss_pred CHHHHHh-cCCCccc
Q 003307 816 SLAVYLQ-GKGLVLW 829 (832)
Q Consensus 816 sL~~~l~-~~~~l~w 829 (832)
+|.+++. ....+++
T Consensus 110 ~L~~~~~~~~~~~~~ 124 (314)
T 3com_A 110 SVSDIIRLRNKTLTE 124 (314)
T ss_dssp EHHHHHHHHTCCCCH
T ss_pred CHHHHHHhcCCCCCH
Confidence 9999997 3445554
No 316
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=98.96 E-value=1e-09 Score=114.76 Aligned_cols=89 Identities=31% Similarity=0.527 Sum_probs=72.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhh-------HHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKG-------KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~-------~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+++.||||++....... .+.|.+|++++.+++||||+++++++... .++|
T Consensus 24 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~----~~lv 99 (287)
T 4f0f_A 24 EKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP----PRMV 99 (287)
T ss_dssp EEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT----TEEE
T ss_pred hhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC----CeEE
Confidence 67899999999999998 489999999985332111 16799999999999999999999998533 3699
Q ss_pred EecCCCCCHHHHHhcCC-Cccc
Q 003307 809 SNYINAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~-~l~w 829 (832)
|||+++|+|.+++..+. .++|
T Consensus 100 ~e~~~~~~L~~~l~~~~~~~~~ 121 (287)
T 4f0f_A 100 MEFVPCGDLYHRLLDKAHPIKW 121 (287)
T ss_dssp EECCTTCBHHHHHHCTTSCCCH
T ss_pred EEecCCCCHHHHHhcccCCccH
Confidence 99999999999887654 4555
No 317
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=98.96 E-value=9.3e-10 Score=116.85 Aligned_cols=89 Identities=29% Similarity=0.421 Sum_probs=74.2
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|++++.++ +||||++++++|...+. ..++|
T Consensus 32 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~-~~~lv 110 (316)
T 2xir_A 32 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG-PLMVI 110 (316)
T ss_dssp EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS-CCEEE
T ss_pred eeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCC-ceEEE
Confidence 67899999999999984 356899999996543 33456799999999999 79999999999876442 38999
Q ss_pred EecCCCCCHHHHHhcCCC
Q 003307 809 SNYINAQSLAVYLQGKGL 826 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~ 826 (832)
|||+++|+|.++++..+.
T Consensus 111 ~e~~~~~~L~~~l~~~~~ 128 (316)
T 2xir_A 111 VEFCKFGNLSTYLRSKRN 128 (316)
T ss_dssp EECCTTEEHHHHHHTCTT
T ss_pred EEcCCCCcHHHHHHhccc
Confidence 999999999999987553
No 318
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=98.96 E-value=3e-10 Score=122.83 Aligned_cols=91 Identities=25% Similarity=0.339 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGI----AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~l 807 (832)
.+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++.++ +||||+++++++...+. .++
T Consensus 59 ~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~--~~l 136 (355)
T 1vzo_A 59 LKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK--LHL 136 (355)
T ss_dssp EEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE--EEE
T ss_pred EEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce--EEE
Confidence 67899999999999997 378999999985421 12335678899999999 69999999999987776 999
Q ss_pred EEecCCCCCHHHHHhcCCCccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w 829 (832)
|||||++|+|.+++...+.+++
T Consensus 137 v~e~~~~~~L~~~l~~~~~~~~ 158 (355)
T 1vzo_A 137 ILDYINGGELFTHLSQRERFTE 158 (355)
T ss_dssp EECCCCSCBHHHHHHHHSCCCH
T ss_pred EeecCCCCCHHHHHHHcCCCCH
Confidence 9999999999999987766665
No 319
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=98.96 E-value=4.6e-10 Score=118.40 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=59.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ....+++.+|++++.+++||||+++++++...+. .++||||+++
T Consensus 20 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 97 (303)
T 2vwi_A 20 QEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDE--LWLVMKLLSG 97 (303)
T ss_dssp EEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSC--EEEEEECCTT
T ss_pred hheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCC--cEEEehhccC
Confidence 67899999999999996 478999999885432 2335678999999999999999999999998877 9999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.+++..
T Consensus 98 ~~L~~~l~~ 106 (303)
T 2vwi_A 98 GSVLDIIKH 106 (303)
T ss_dssp CBHHHHHHH
T ss_pred CchHHHHHH
Confidence 999999873
No 320
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=98.96 E-value=1.2e-09 Score=117.09 Aligned_cols=86 Identities=29% Similarity=0.378 Sum_probs=73.7
Q ss_pred cCeeeeccCceEEEEEEC-CC-----CEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SG-----SILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g-----~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+.. +| ..||||.+... .....+.+.+|++++.++ +||||++++++|...+. .++|
T Consensus 51 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~--~~lv 128 (333)
T 2i1m_A 51 GKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP--VLVI 128 (333)
T ss_dssp EEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEE
T ss_pred eeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCc--eEEE
Confidence 678999999999999963 33 48999999654 333456799999999999 89999999999988777 9999
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
|||+++|+|.++++..
T Consensus 129 ~e~~~~g~L~~~l~~~ 144 (333)
T 2i1m_A 129 TEYCCYGDLLNFLRRK 144 (333)
T ss_dssp EECCTTEEHHHHHHHH
T ss_pred EecCCCCcHHHHHHHh
Confidence 9999999999999753
No 321
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=98.95 E-value=1.8e-09 Score=113.69 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=69.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhc--CCCCcceeeeeEEECCC--CceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGN--IKHPNLVSLQGYYWGPK--EHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~--~~H~niv~l~g~~~~~~--~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. +|+.||||++... ..+.+.+|.+++.. ++||||+++++++.... ....++||||+
T Consensus 13 ~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~ 88 (301)
T 3q4u_A 13 LECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYH 88 (301)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCC
T ss_pred EEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhc
Confidence 67899999999999998 6899999998543 34556667777665 89999999999976532 12378999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++.. .++|
T Consensus 89 ~~g~L~~~l~~~-~~~~ 104 (301)
T 3q4u_A 89 EMGSLYDYLQLT-TLDT 104 (301)
T ss_dssp TTCBHHHHHTTC-CBCH
T ss_pred cCCCHHHHHhhc-ccCH
Confidence 999999999643 4554
No 322
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=98.95 E-value=7.7e-10 Score=115.47 Aligned_cols=89 Identities=24% Similarity=0.394 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--------------C
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--------------K 801 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--------------~ 801 (832)
.+.||+|+||.||+|+.. +|+.||||+++... +.+.+|++++.+++||||+++++++... .
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (284)
T 2a19_B 16 IELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSK 91 (284)
T ss_dssp EEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCE
T ss_pred eeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccC
Confidence 678999999999999985 89999999986543 3467899999999999999999988541 1
Q ss_pred CceEEEEEecCCCCCHHHHHhcC--CCccc
Q 003307 802 EHEKLVISNYINAQSLAVYLQGK--GLVLW 829 (832)
Q Consensus 802 ~~~~~lv~e~~~~GsL~~~l~~~--~~l~w 829 (832)
....++||||+++|+|.++++.. ..++|
T Consensus 92 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~ 121 (284)
T 2a19_B 92 TKCLFIQMEFCDKGTLEQWIEKRRGEKLDK 121 (284)
T ss_dssp EEEEEEEECCCCSCBHHHHHHHGGGSCCCH
T ss_pred cceEEEEEeccCCCCHHHHHhhccCCCCCH
Confidence 22379999999999999999754 34554
No 323
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=98.95 E-value=8.6e-10 Score=119.92 Aligned_cols=92 Identities=28% Similarity=0.366 Sum_probs=74.1
Q ss_pred cCeeeeccCceEEEEEEC--CC--CEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD--SG--SILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~g--~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. ++ ..||||.++.. .....+.|.+|++++++++|||||+++++|...+. ..++||||
T Consensus 94 ~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~-~~~lv~e~ 172 (373)
T 3c1x_A 94 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPLVVLPY 172 (373)
T ss_dssp EEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSS-CCEEEEEC
T ss_pred CcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCC-CeEEEEEC
Confidence 568999999999999863 33 46899998643 33446789999999999999999999999865432 37999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
|++|+|.++++..+ .++|
T Consensus 173 ~~~g~L~~~l~~~~~~~~~ 191 (373)
T 3c1x_A 173 MKHGDLRNFIRNETHNPTV 191 (373)
T ss_dssp CTTCBHHHHHHCTTCCCBH
T ss_pred CCCCCHHHHHhhcccCCCH
Confidence 99999999998654 3444
No 324
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=98.94 E-value=1.7e-09 Score=112.82 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. .+..||||.+... .....+.|.+|++++.+++||||+++++++... . .++||||
T Consensus 17 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~--~~~v~e~ 93 (281)
T 3cc6_A 17 NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-P--TWIIMEL 93 (281)
T ss_dssp EEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-S--CEEEEEC
T ss_pred EEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-C--CEEEEec
Confidence 678999999999999863 2346999998654 334567899999999999999999999998643 3 6899999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++..+ .+++
T Consensus 94 ~~~~~L~~~l~~~~~~~~~ 112 (281)
T 3cc6_A 94 YPYGELGHYLERNKNSLKV 112 (281)
T ss_dssp CTTCBHHHHHHHHTTTCCH
T ss_pred CCCCCHHHHHHhccccCCH
Confidence 99999999997543 3554
No 325
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=98.94 E-value=1.2e-09 Score=122.60 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=68.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++|||||+++++|..... ...++|||
T Consensus 58 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e 137 (458)
T 3rp9_A 58 RHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLE 137 (458)
T ss_dssp CCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEC
T ss_pred eeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEe
Confidence 678999999999999974 8999999998543 33345779999999999999999999999854321 23899999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+ |+|.++++..+.+++.
T Consensus 138 ~~~-~~L~~~~~~~~~l~~~ 156 (458)
T 3rp9_A 138 IAD-SDFKKLFRTPVYLTEL 156 (458)
T ss_dssp CCS-EEHHHHHHSSCCCCHH
T ss_pred ccc-cchhhhcccCCCCCHH
Confidence 986 7999999887777653
No 326
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=98.94 E-value=1.6e-09 Score=114.99 Aligned_cols=86 Identities=22% Similarity=0.412 Sum_probs=67.5
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc---eEEE
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH---EKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~---~~~l 807 (832)
.+.||+|+||.||+|+.. ++..||||+++.. .....+.|.+|++++.+++||||++++++|...+.. ..++
T Consensus 39 ~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 118 (313)
T 3brb_A 39 GKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMV 118 (313)
T ss_dssp EEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEE
T ss_pred ccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEE
Confidence 678999999999999863 3458999998643 333456799999999999999999999999865531 2599
Q ss_pred EEecCCCCCHHHHHh
Q 003307 808 ISNYINAQSLAVYLQ 822 (832)
Q Consensus 808 v~e~~~~GsL~~~l~ 822 (832)
||||+++|+|.+++.
T Consensus 119 v~e~~~~~~L~~~l~ 133 (313)
T 3brb_A 119 ILPFMKYGDLHTYLL 133 (313)
T ss_dssp EEECCTTCBHHHHHH
T ss_pred EEecccCCCHHHHHH
Confidence 999999999999995
No 327
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=98.94 E-value=1.5e-09 Score=118.97 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=77.4
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCC--CCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIK--HPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~--H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|...+|+.||||++... .....+.|.+|++++.+++ |||||++++++...+. .++||| +
T Consensus 61 ~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~--~~lv~E-~ 137 (390)
T 2zmd_A 61 LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY--IYMVME-C 137 (390)
T ss_dssp EEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEEE-C
T ss_pred EEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCE--EEEEEe-c
Confidence 6789999999999999878999999998543 3344578999999999996 5999999999998776 999999 6
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
.+|+|.+++...+.++|
T Consensus 138 ~~~~L~~~l~~~~~~~~ 154 (390)
T 2zmd_A 138 GNIDLNSWLKKKKSIDP 154 (390)
T ss_dssp CSEEHHHHHHHCSSCCH
T ss_pred CCCCHHHHHHhcCCCCH
Confidence 78899999998777665
No 328
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=98.93 E-value=1.7e-09 Score=114.66 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=72.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||+||+|+.. +|+.||||++... .......+..|+..+.++ +|||||+++++|...+. .++|||||
T Consensus 62 ~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~--~~lv~e~~ 139 (311)
T 3p1a_A 62 LSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGI--LYLQTELC 139 (311)
T ss_dssp EEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred eheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCE--EEEEEecc
Confidence 568999999999999985 8999999998543 233345566677666655 99999999999987776 99999999
Q ss_pred CCCCHHHHHhcCC-Ccccc
Q 003307 813 NAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~-~l~w~ 830 (832)
+|+|.+++...+ .++|.
T Consensus 140 -~~~L~~~~~~~~~~l~~~ 157 (311)
T 3p1a_A 140 -GPSLQQHCEAWGASLPEA 157 (311)
T ss_dssp -CCBHHHHHHHHCSCCCHH
T ss_pred -CCCHHHHHHhcCCCCCHH
Confidence 679999887543 46664
No 329
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=98.92 E-value=1.7e-09 Score=112.62 Aligned_cols=84 Identities=25% Similarity=0.438 Sum_probs=70.8
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+. .|+.||||.++... ..+.|.+|++++.+++||||+++++++...+. ..++||||+++|+
T Consensus 26 ~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~lv~e~~~~~~ 101 (278)
T 1byg_A 26 LQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGS 101 (278)
T ss_dssp EEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC---CCEEEECCCTTEE
T ss_pred EeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCC-ceEEEEecCCCCC
Confidence 67899999999999987 48899999986543 35679999999999999999999999865432 3899999999999
Q ss_pred HHHHHhcC
Q 003307 817 LAVYLQGK 824 (832)
Q Consensus 817 L~~~l~~~ 824 (832)
|.+++...
T Consensus 102 L~~~l~~~ 109 (278)
T 1byg_A 102 LVDYLRSR 109 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999754
No 330
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=98.92 E-value=2.5e-09 Score=112.88 Aligned_cols=86 Identities=16% Similarity=0.335 Sum_probs=70.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|.. .+|+.||||+++... ....+.|.+|++++.+++||||+++++++...+....++||||
T Consensus 10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~ 89 (305)
T 2wtk_C 10 GDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEY 89 (305)
T ss_dssp CCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEEC
T ss_pred eeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehh
Confidence 67899999999999997 478999999985431 2235779999999999999999999999865443348999999
Q ss_pred CCCCCHHHHHhc
Q 003307 812 INAQSLAVYLQG 823 (832)
Q Consensus 812 ~~~GsL~~~l~~ 823 (832)
+++| |.+++..
T Consensus 90 ~~~~-l~~~~~~ 100 (305)
T 2wtk_C 90 CVCG-MQEMLDS 100 (305)
T ss_dssp CSEE-HHHHHHH
T ss_pred ccCC-HHHHHHh
Confidence 9987 7777765
No 331
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=98.91 E-value=2e-09 Score=114.44 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=67.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC------------CCc
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP------------KEH 803 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~------------~~~ 803 (832)
...||+|+||.||+|+.. +|+.||||++........+.+.+|++++.+++||||+++++++... +..
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 95 (320)
T 2i6l_A 16 LKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELN 95 (320)
T ss_dssp EEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCS
T ss_pred EEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccC
Confidence 568999999999999985 6999999998766555667899999999999999999999988432 112
Q ss_pred eEEEEEecCCCCCHHHHHhc
Q 003307 804 EKLVISNYINAQSLAVYLQG 823 (832)
Q Consensus 804 ~~~lv~e~~~~GsL~~~l~~ 823 (832)
..++||||++ |+|.++++.
T Consensus 96 ~~~lv~e~~~-~~L~~~~~~ 114 (320)
T 2i6l_A 96 SVYIVQEYME-TDLANVLEQ 114 (320)
T ss_dssp EEEEEEECCS-EEHHHHHTT
T ss_pred ceeEEeeccC-CCHHHHhhc
Confidence 4899999998 699999865
No 332
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=98.91 E-value=1.7e-09 Score=118.75 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=70.2
Q ss_pred CeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHH-hcCCCCcceeeeeEEEC--CCCceEEEEEecCC
Q 003307 738 EVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKL-GNIKHPNLVSLQGYYWG--PKEHEKLVISNYIN 813 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l-~~~~H~niv~l~g~~~~--~~~~~~~lv~e~~~ 813 (832)
.+||+|+||+||+|+.. +|+.||||+++.. ..+.+|++++ +..+|||||+++++|.. .+....++|||||+
T Consensus 68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~ 142 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLD 142 (400)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred ceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCC
Confidence 57999999999999974 7999999998632 3567888887 45589999999998864 12223899999999
Q ss_pred CCCHHHHHhcCC--Ccccc
Q 003307 814 AQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~--~l~w~ 830 (832)
+|+|.++++..+ .++|.
T Consensus 143 gg~L~~~l~~~~~~~l~~~ 161 (400)
T 1nxk_A 143 GGELFSRIQDRGDQAFTER 161 (400)
T ss_dssp SEEHHHHHHCC---CCBHH
T ss_pred CCcHHHHHHHhCCCCCCHH
Confidence 999999998754 36653
No 333
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=98.91 E-value=1.1e-09 Score=117.07 Aligned_cols=89 Identities=11% Similarity=-0.003 Sum_probs=74.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||.+..... .+.+.+|++++.++ +||||+++++++...+. .++||||+ +
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~--~~lv~e~~-~ 88 (330)
T 2izr_A 14 GKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKY--NAMVLELL-G 88 (330)
T ss_dssp EEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTE--EEEEEECC-C
T ss_pred EEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCc--cEEEEEeC-C
Confidence 67899999999999997 5899999999854322 24588999999999 99999999999988776 89999999 9
Q ss_pred CCHHHHHhcC-CCcccc
Q 003307 815 QSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w~ 830 (832)
|+|.++++.. +.++|.
T Consensus 89 ~~L~~~~~~~~~~~~~~ 105 (330)
T 2izr_A 89 PSLEDLFDLCDRTFSLK 105 (330)
T ss_dssp CBHHHHHHHTTTCCCHH
T ss_pred CCHHHHHHHcCCCCCHH
Confidence 9999999863 456653
No 334
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.90 E-value=2.4e-09 Score=118.06 Aligned_cols=92 Identities=24% Similarity=0.366 Sum_probs=69.1
Q ss_pred chhhhcccccCeeeeccCceEEEEEEC---CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCce
Q 003307 728 TAEELSHAPAEVIGRSCHGTLYKATLD---SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHE 804 (832)
Q Consensus 728 ~~~~l~~~~~~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~ 804 (832)
.+++.....+..||+|+||.||+|+.. +++.||||++..... ...+.+|++++++++|||||+++++|.......
T Consensus 17 ~~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 94 (405)
T 3rgf_A 17 RVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRK 94 (405)
T ss_dssp CHHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE
T ss_pred hhhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe
Confidence 345555555778999999999999964 678999999964322 356889999999999999999999997544445
Q ss_pred EEEEEecCCCCCHHHHHh
Q 003307 805 KLVISNYINAQSLAVYLQ 822 (832)
Q Consensus 805 ~~lv~e~~~~GsL~~~l~ 822 (832)
.++||||++ |+|.+++.
T Consensus 95 ~~lv~e~~~-~~l~~~~~ 111 (405)
T 3rgf_A 95 VWLLFDYAE-HDLWHIIK 111 (405)
T ss_dssp EEEEEECCS-EEHHHHHH
T ss_pred EEEEEeCCC-CCHHHHHH
Confidence 999999998 58888875
No 335
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=98.89 E-value=9.8e-10 Score=117.26 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=72.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCE----EEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSI----LAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~----vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+. .+|+. ||+|.+.... ....+.+.+|+.++++++|||||+++++|.. +. .++|+|
T Consensus 18 ~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~--~~~v~e 94 (325)
T 3kex_A 18 LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG-SS--LQLVTQ 94 (325)
T ss_dssp EEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB-SS--EEEEEE
T ss_pred eeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-Cc--cEEEEE
Confidence 67899999999999996 35554 7888774332 2223567899999999999999999999863 34 899999
Q ss_pred cCCCCCHHHHHhcC-CCcccc
Q 003307 811 YINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w~ 830 (832)
|+++|+|.++++.. +.++|.
T Consensus 95 ~~~~~~L~~~l~~~~~~~~~~ 115 (325)
T 3kex_A 95 YLPLGSLLDHVRQHRGALGPQ 115 (325)
T ss_dssp CCTTCBSHHHHHSSGGGSCTT
T ss_pred eCCCCCHHHHHHHccccCCHH
Confidence 99999999999865 355553
No 336
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=98.89 E-value=4.3e-09 Score=113.08 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhc--CCCCcceeeeeEEECCCCc--eEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGN--IKHPNLVSLQGYYWGPKEH--EKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~--~~H~niv~l~g~~~~~~~~--~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. +|+.||||++... ..+.+.+|++++.. ++||||+++++++...... ..++||||+
T Consensus 47 ~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~ 122 (342)
T 1b6c_B 47 QESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYH 122 (342)
T ss_dssp EEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCC
T ss_pred EeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeec
Confidence 67899999999999998 5899999998543 34668889988887 7999999999999876511 389999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++.. .++|
T Consensus 123 ~~g~L~~~l~~~-~~~~ 138 (342)
T 1b6c_B 123 EHGSLFDYLNRY-TVTV 138 (342)
T ss_dssp TTCBHHHHHHHC-CBCH
T ss_pred CCCcHHHHHhcc-CccH
Confidence 999999999764 3444
No 337
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=98.89 E-value=3.4e-09 Score=111.59 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=71.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHH-hcCCCCcceeeeeEEEC--CCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKL-GNIKHPNLVSLQGYYWG--PKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l-~~~~H~niv~l~g~~~~--~~~~~~~lv~e~~ 812 (832)
.++||+|+||.||+|+. .+|+.||||+++.. ..+.+|++++ +..+||||+++++++.. .+....++||||+
T Consensus 23 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~ 97 (299)
T 3m2w_A 23 SQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECL 97 (299)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCC
T ss_pred CcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeec
Confidence 36799999999999997 48999999998642 4567888887 66799999999999875 1122389999999
Q ss_pred CCCCHHHHHhcCC--Cccc
Q 003307 813 NAQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~--~l~w 829 (832)
++|+|.+++.... .+++
T Consensus 98 ~~~~L~~~l~~~~~~~~~~ 116 (299)
T 3m2w_A 98 DGGELFSRIQDRGDQAFTE 116 (299)
T ss_dssp CSCBHHHHHHHCTTCCCBH
T ss_pred CCCcHHHHHHhccCCCCCH
Confidence 9999999998754 4554
No 338
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=98.89 E-value=2.4e-09 Score=114.25 Aligned_cols=87 Identities=18% Similarity=0.373 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCC----CceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPK----EHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~----~~~~~lv~e 810 (832)
.+.||+|+||.||+|+. .+|+.||||++..... ..+.+.+|++++.++ +||||+++++++.... ....++|||
T Consensus 29 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e 107 (326)
T 2x7f_A 29 VELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVME 107 (326)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEE
T ss_pred EEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEE
Confidence 67899999999999997 4899999999864322 346789999999998 8999999999997632 224899999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
|+++|+|.+++...
T Consensus 108 ~~~~~~L~~~l~~~ 121 (326)
T 2x7f_A 108 FCGAGSVTDLIKNT 121 (326)
T ss_dssp CCTTEEHHHHHHHS
T ss_pred cCCCCcHHHHHHhc
Confidence 99999999999864
No 339
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=98.89 E-value=1.8e-09 Score=115.36 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=76.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||++... ......++.+|++++.+++ ||||+++++++...+. .++|||||
T Consensus 34 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~--~~lv~e~~ 111 (327)
T 3lm5_A 34 SKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSE--IILILEYA 111 (327)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred cceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCe--EEEEEEec
Confidence 468999999999999975 7999999998543 2234678999999999994 6999999999987776 99999999
Q ss_pred CCCCHHHHHhcC--CCccc
Q 003307 813 NAQSLAVYLQGK--GLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~--~~l~w 829 (832)
++|+|.+++... +.++|
T Consensus 112 ~~~~L~~~~~~~~~~~~~~ 130 (327)
T 3lm5_A 112 AGGEIFSLCLPELAEMVSE 130 (327)
T ss_dssp TTEEGGGGGSSCC-CCCCH
T ss_pred CCCcHHHHHHHhcccCCCH
Confidence 999999998653 44554
No 340
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=98.88 E-value=2.9e-09 Score=111.99 Aligned_cols=85 Identities=25% Similarity=0.450 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++.+++||||+++++++...+. .++||||++
T Consensus 8 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 85 (299)
T 2r3i_A 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENK--LYLVFEFLH 85 (299)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred hhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCc--eEEEEEccc
Confidence 568999999999999985 89999999985432 2224678899999999999999999999988776 999999998
Q ss_pred CCCHHHHHhcC
Q 003307 814 AQSLAVYLQGK 824 (832)
Q Consensus 814 ~GsL~~~l~~~ 824 (832)
|+|.+++...
T Consensus 86 -~~L~~~~~~~ 95 (299)
T 2r3i_A 86 -QDLKKFMDAS 95 (299)
T ss_dssp -EEHHHHHHHT
T ss_pred -CCHHHHHHhh
Confidence 6999999765
No 341
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=98.88 E-value=1.2e-09 Score=116.65 Aligned_cols=90 Identities=24% Similarity=0.417 Sum_probs=72.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +|+.||||+++..... ....+.+|++++.+++|||||++++++...+. .++|||||+
T Consensus 7 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~- 83 (324)
T 3mtl_A 7 LDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKS--LTLVFEYLD- 83 (324)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSC--EEEEEECCS-
T ss_pred EEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCE--EEEEecccc-
Confidence 567999999999999985 8999999998543221 12246689999999999999999999998777 999999998
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.+++...+ .+++
T Consensus 84 ~~l~~~~~~~~~~~~~ 99 (324)
T 3mtl_A 84 KDLKQYLDDCGNIINM 99 (324)
T ss_dssp EEHHHHHHHTTTCCCH
T ss_pred cCHHHHHHhcCCCCCH
Confidence 69999987654 3444
No 342
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=98.88 E-value=2.4e-09 Score=116.22 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=68.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++|||||++++++...+. ...++||
T Consensus 30 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~ 109 (367)
T 1cm8_A 30 LQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVM 109 (367)
T ss_dssp EEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEE
T ss_pred eEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEE
Confidence 56899999999999997 48999999998543 23345678999999999999999999999976532 1369999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
||| +++|.++++.. .+++
T Consensus 110 e~~-~~~L~~~~~~~-~l~~ 127 (367)
T 1cm8_A 110 PFM-GTDLGKLMKHE-KLGE 127 (367)
T ss_dssp ECC-SEEHHHHHHHC-CCCH
T ss_pred ecC-CCCHHHHHhcC-CCCH
Confidence 999 78999998763 3443
No 343
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=98.87 E-value=2.6e-09 Score=114.40 Aligned_cols=93 Identities=22% Similarity=0.276 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEEC------CCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWG------PKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~------~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+|+.||||++........+.+.+|++++.++. |||||++++++.. ......++|
T Consensus 33 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv 112 (337)
T 3ll6_A 33 RRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLL 112 (337)
T ss_dssp EEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEE
T ss_pred EEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEE
Confidence 67899999999999997 489999999986655556678999999999996 9999999999852 122247999
Q ss_pred EecCCCCCHHHHHhc---CCCcccc
Q 003307 809 SNYINAQSLAVYLQG---KGLVLWF 830 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~---~~~l~w~ 830 (832)
+||++ |+|.++++. .+.++|.
T Consensus 113 ~e~~~-g~L~~~l~~~~~~~~~~~~ 136 (337)
T 3ll6_A 113 TELCK-GQLVEFLKKMESRGPLSCD 136 (337)
T ss_dssp EECCS-EEHHHHHHHHHTTCSCCHH
T ss_pred EEecC-CCHHHHHHHhhccCCCCHH
Confidence 99997 799998864 4456653
No 344
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=98.87 E-value=2.2e-09 Score=116.43 Aligned_cols=92 Identities=18% Similarity=0.309 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC-----------hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC---C
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI-----------AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK---E 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~-----------~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~---~ 802 (832)
...||+|+||.||+|+..+|..||||++.... ....+.|.+|++++.+++||||+++++++...+ .
T Consensus 27 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 106 (362)
T 3pg1_A 27 QRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAM 106 (362)
T ss_dssp EEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTC
T ss_pred eEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCCCc
Confidence 67899999999999998789999999884321 112367999999999999999999999986432 2
Q ss_pred ceEEEEEecCCCCCHHHHHhcCC-Cccc
Q 003307 803 HEKLVISNYINAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 803 ~~~~lv~e~~~~GsL~~~l~~~~-~l~w 829 (832)
...++||||++ |+|.++++..+ .++|
T Consensus 107 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~ 133 (362)
T 3pg1_A 107 HKLYLVTELMR-TDLAQVIHDQRIVISP 133 (362)
T ss_dssp CEEEEEEECCS-EEHHHHHHCTTSCCCH
T ss_pred ceEEEEEccCC-CCHHHHHHhcccCCCH
Confidence 24799999999 68999887654 4554
No 345
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=98.87 E-value=5.6e-09 Score=112.14 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=73.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHH-HhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKK-LGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~-l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+. .+|+.||||+++.. ......++..|+.. ++.++||||+++++++...+. .++|||||+
T Consensus 56 ~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~--~~lv~e~~~ 133 (340)
T 3an0_A 56 IMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGD--VWICMELMD 133 (340)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSC--EEEEECCCS
T ss_pred eeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCc--EEEEHHHhh
Confidence 56799999999999997 58999999999643 22334556666666 788999999999999998777 999999998
Q ss_pred CCCHHHHHhc----CCCcccc
Q 003307 814 AQSLAVYLQG----KGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~----~~~l~w~ 830 (832)
+ +|.+++.. ...++|.
T Consensus 134 ~-~L~~~l~~~~~~~~~l~~~ 153 (340)
T 3an0_A 134 T-SLDKFYKQVIDKGQTIPED 153 (340)
T ss_dssp E-EHHHHHHHHHHTSCCCCHH
T ss_pred C-cHHHHHHHHHhcCCCCCHH
Confidence 5 99998863 4456653
No 346
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=98.87 E-value=3.8e-09 Score=111.67 Aligned_cols=88 Identities=24% Similarity=0.320 Sum_probs=72.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. ..+|||+++.. .....+.|.+|++++.+++||||+++++++.. +. .++||||+++
T Consensus 41 ~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~--~~lv~e~~~~ 115 (307)
T 3lb7_A 41 STRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DN--LAIVTQWCEG 115 (307)
T ss_dssp EEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SS--CEEEEECCSS
T ss_pred EeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-Cc--EEEEEecCCC
Confidence 678999999999999864 46899988643 33445779999999999999999999998754 34 7999999999
Q ss_pred CCHHHHHhcC-CCccc
Q 003307 815 QSLAVYLQGK-GLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w 829 (832)
|+|.++++.. ..++|
T Consensus 116 ~~L~~~l~~~~~~~~~ 131 (307)
T 3lb7_A 116 SSLYKHLHVQETKFQM 131 (307)
T ss_dssp CBHHHHHHTSCCCCCH
T ss_pred CcHHHHHHhcccCCCH
Confidence 9999999743 44554
No 347
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=98.86 E-value=4.7e-09 Score=122.63 Aligned_cols=91 Identities=18% Similarity=0.248 Sum_probs=74.8
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. .+..||||+++.. .....+.|.+|+.++++++|||||+++|++.. +. .++||||
T Consensus 395 ~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~~--~~lv~E~ 471 (656)
T 2j0j_A 395 GRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NP--VWIIMEL 471 (656)
T ss_dssp EEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS--CEEEEEC
T ss_pred eeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-Cc--eEEEEEc
Confidence 578999999999999873 3567999998653 33345779999999999999999999999853 44 7999999
Q ss_pred CCCCCHHHHHhcCC-Ccccc
Q 003307 812 INAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w~ 830 (832)
|++|+|.++++.++ .++|.
T Consensus 472 ~~~g~L~~~l~~~~~~l~~~ 491 (656)
T 2j0j_A 472 CTLGELRSFLQVRKFSLDLA 491 (656)
T ss_dssp CTTCBHHHHHHHTTTTCCHH
T ss_pred CCCCcHHHHHHhccCCCCHH
Confidence 99999999998654 45553
No 348
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.86 E-value=1.9e-09 Score=126.38 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=77.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||.||+|+.. +|+.||||+++... ....+.+..|.+++..+ +||+|+++++++.+.+. .++||||
T Consensus 346 ~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~--~~lV~E~ 423 (674)
T 3pfq_A 346 LMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR--LYFVMEY 423 (674)
T ss_dssp EEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSE--EEEEEEC
T ss_pred EEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCE--EEEEEeC
Confidence 578999999999999974 78999999986421 12345688999999987 79999999999987766 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.+++.
T Consensus 424 ~~gg~L~~~l~~~~~~~~~ 442 (674)
T 3pfq_A 424 VNGGDLMYHIQQVGRFKEP 442 (674)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred cCCCcHHHHHHhcCCCCHH
Confidence 9999999999987777654
No 349
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=98.86 E-value=6.2e-09 Score=111.24 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=72.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||+++... .+.+.+|++++.+++ ||||+++++++........++||||+++
T Consensus 41 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~ 117 (330)
T 3nsz_A 41 VRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNN 117 (330)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCC
T ss_pred EEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCc
Confidence 67899999999999987 589999999996432 467899999999997 9999999999987443348999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.++++.
T Consensus 118 ~~l~~~~~~ 126 (330)
T 3nsz_A 118 TDFKQLYQT 126 (330)
T ss_dssp CCHHHHGGG
T ss_pred hhHHHHHHh
Confidence 999988753
No 350
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=98.85 E-value=4e-09 Score=110.46 Aligned_cols=88 Identities=24% Similarity=0.332 Sum_probs=71.3
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. ..||||+++.. .....+.|.+|++++++++||||+++++++.. +. .++||||+++
T Consensus 29 ~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~--~~lv~e~~~~ 103 (289)
T 3og7_A 29 GQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQ--LAIVTQWCEG 103 (289)
T ss_dssp EEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SS--CEEEEECCCE
T ss_pred eeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccC-Cc--cEEEEEecCC
Confidence 678999999999999864 46999998643 33445779999999999999999999997753 34 7999999999
Q ss_pred CCHHHHHhcC-CCccc
Q 003307 815 QSLAVYLQGK-GLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w 829 (832)
|+|.++++.. ..++|
T Consensus 104 ~~L~~~l~~~~~~~~~ 119 (289)
T 3og7_A 104 SSLYHHLHASETKFEM 119 (289)
T ss_dssp EEHHHHHTTC---CCH
T ss_pred CcHHHHHhhccCCCCH
Confidence 9999999754 34554
No 351
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=98.85 E-value=6.5e-09 Score=112.62 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-----CCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-----HPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-----H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+. .+|+.||||+++.. ....+.+..|++++.+++ |||||++++++...+. .++|||
T Consensus 40 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~--~~lv~e 116 (360)
T 3llt_A 40 IRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDH--MCLIFE 116 (360)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTE--EEEEEC
T ss_pred EEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCe--eEEEEc
Confidence 57899999999999998 58999999999643 334567888999999886 9999999999988776 999999
Q ss_pred cCCCCCHHHHHhcCC
Q 003307 811 YINAQSLAVYLQGKG 825 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~ 825 (832)
|+ +|+|.+++....
T Consensus 117 ~~-~~~L~~~~~~~~ 130 (360)
T 3llt_A 117 PL-GPSLYEIITRNN 130 (360)
T ss_dssp CC-CCBHHHHHHHTT
T ss_pred CC-CCCHHHHHHhcC
Confidence 99 899999998654
No 352
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=98.85 E-value=5.1e-09 Score=114.71 Aligned_cols=87 Identities=18% Similarity=0.402 Sum_probs=65.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+. .+|+.||||++... .....+.+.+|+.++.+++ |||||++++++...+....++|||||
T Consensus 14 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~ 93 (388)
T 3oz6_A 14 VKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYM 93 (388)
T ss_dssp EEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECC
T ss_pred EEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEeccc
Confidence 56799999999999997 48999999998543 3344567889999999997 99999999999865543489999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
+ |+|.++++..
T Consensus 94 ~-~~L~~~~~~~ 104 (388)
T 3oz6_A 94 E-TDLHAVIRAN 104 (388)
T ss_dssp S-EEHHHHHHHT
T ss_pred C-cCHHHHHHcC
Confidence 8 6999998764
No 353
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=98.85 E-value=3.4e-09 Score=114.18 Aligned_cols=90 Identities=21% Similarity=0.400 Sum_probs=72.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChh-----hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAK-----GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++...... ..+.+.+|++++.+++|||||++++++...+. .++|||
T Consensus 15 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e 92 (346)
T 1ua2_A 15 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN--ISLVFD 92 (346)
T ss_dssp EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC--CEEEEE
T ss_pred EeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc--eEEEEE
Confidence 578999999999999974 7999999998543211 12468899999999999999999999987777 999999
Q ss_pred cCCCCCHHHHHhcCC-Cccc
Q 003307 811 YINAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~-~l~w 829 (832)
||++ +|.+++.... .+++
T Consensus 93 ~~~~-~l~~~~~~~~~~~~~ 111 (346)
T 1ua2_A 93 FMET-DLEVIIKDNSLVLTP 111 (346)
T ss_dssp CCSE-EHHHHHTTCCSSCCS
T ss_pred cCCC-CHHHHHHhcCcCCCH
Confidence 9996 8999887653 4554
No 354
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=98.84 E-value=1.2e-09 Score=119.10 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=69.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHH---HHHhcCCCCcceeee-------eEEECCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREV---KKLGNIKHPNLVSLQ-------GYYWGPKE 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~---~~l~~~~H~niv~l~-------g~~~~~~~ 802 (832)
.+.||+|+||.||+|+. .+|+.||||++... .....+.|.+|+ +.+++++|||||+++ +++...+.
T Consensus 78 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~ 157 (377)
T 3byv_A 78 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQK 157 (377)
T ss_dssp EEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTS
T ss_pred cceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCC
Confidence 67899999999999996 57999999998532 333457799999 566677899999998 55554321
Q ss_pred ----------c-----eEEEEEecCCCCCHHHHHhcCCCc
Q 003307 803 ----------H-----EKLVISNYINAQSLAVYLQGKGLV 827 (832)
Q Consensus 803 ----------~-----~~~lv~e~~~~GsL~~~l~~~~~l 827 (832)
. ..++||||| +|+|.++++..+.+
T Consensus 158 ~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~ 196 (377)
T 3byv_A 158 KKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSH 196 (377)
T ss_dssp CSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHT
T ss_pred ccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhcccc
Confidence 0 178999999 68999999864433
No 355
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=98.84 E-value=6.4e-09 Score=111.46 Aligned_cols=88 Identities=19% Similarity=0.272 Sum_probs=69.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcC--CCCcceeeeeEEECCCC--ceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNI--KHPNLVSLQGYYWGPKE--HEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~--~H~niv~l~g~~~~~~~--~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. |+.||||++... ....+.+|.+++... +||||+++++++..... ...++|||||
T Consensus 42 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~ 117 (337)
T 3mdy_A 42 VKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYH 117 (337)
T ss_dssp EEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCC
T ss_pred EeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEecc
Confidence 678999999999999985 899999998533 234556666666654 99999999999987632 2389999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++.. .++|
T Consensus 118 ~~g~L~~~l~~~-~~~~ 133 (337)
T 3mdy_A 118 ENGSLYDYLKST-TLDA 133 (337)
T ss_dssp TTCBHHHHHHHC-CBCH
T ss_pred CCCcHHHHhhcc-CCCH
Confidence 999999999764 3444
No 356
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=98.84 E-value=4.8e-09 Score=111.21 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=77.4
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCC--CCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIK--HPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~--H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+..+|+.||||++... .....+.|.+|++++.+++ |+||+++++++...+. .++||| +
T Consensus 33 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~--~~lv~e-~ 109 (313)
T 3cek_A 33 LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY--IYMVME-C 109 (313)
T ss_dssp EEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSE--EEEEEC-C
T ss_pred EEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCE--EEEEEe-c
Confidence 6789999999999999888999999998543 3344578999999999997 5999999999998776 999999 6
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
.+|+|.+++...+.+++
T Consensus 110 ~~~~L~~~l~~~~~~~~ 126 (313)
T 3cek_A 110 GNIDLNSWLKKKKSIDP 126 (313)
T ss_dssp CSEEHHHHHHHCSSCCH
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 77899999998777665
No 357
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=98.84 E-value=8.2e-09 Score=107.99 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=70.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-Chhh-HHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKG-KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~-~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+. .+|+.||||+++.. .... .+.+.++...++.++||||+++++++...+. .++||||++
T Consensus 12 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~--~~lv~e~~~ 89 (290)
T 3fme_A 12 IMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGD--VWICMELMD 89 (290)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSS--EEEEEECCS
T ss_pred HHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCC--EEEEEehhc
Confidence 67899999999999997 58999999998643 2222 3334555556888999999999999998777 999999998
Q ss_pred CCCHHHHHhc----CCCcccc
Q 003307 814 AQSLAVYLQG----KGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~----~~~l~w~ 830 (832)
|+|.++++. ...++|.
T Consensus 90 -~~l~~~l~~~~~~~~~~~~~ 109 (290)
T 3fme_A 90 -TSLDKFYKQVIDKGQTIPED 109 (290)
T ss_dssp -EEHHHHHHHHHHTTCCCCHH
T ss_pred -cchHHHHHHHHhcCCCCCHH
Confidence 588887753 4456553
No 358
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=116.14 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=71.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh------hhHHHHHHHHHHHhcC----CCCcceeeeeEEECCCCceE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA------KGKKEFAREVKKLGNI----KHPNLVSLQGYYWGPKEHEK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~----~H~niv~l~g~~~~~~~~~~ 805 (832)
.+.||+|+||.||+|+. .+|+.||||++..... .....+.+|++++.++ +||||+++++++...+. .
T Consensus 36 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~--~ 113 (312)
T 2iwi_A 36 GPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEG--F 113 (312)
T ss_dssp EEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-------C
T ss_pred eeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCe--E
Confidence 67899999999999987 4899999999854322 1223466799999888 89999999999987776 8
Q ss_pred EEEEec-CCCCCHHHHHhcCCCcccc
Q 003307 806 LVISNY-INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 806 ~lv~e~-~~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|| +++|+|.+++..++.++|.
T Consensus 114 ~~v~e~~~~~~~L~~~l~~~~~~~~~ 139 (312)
T 2iwi_A 114 MLVLERPLPAQDLFDYITEKGPLGEG 139 (312)
T ss_dssp EEEEECCSSEEEHHHHHHHHCSCCHH
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCHH
Confidence 999999 8999999999887766653
No 359
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=98.83 E-value=5.9e-09 Score=111.27 Aligned_cols=90 Identities=24% Similarity=0.385 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCE----EEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSI----LAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~----vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+. .+|+. ||+|.+... .....+.|.+|++++.+++||||++++++|.... .++|+|
T Consensus 20 ~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~---~~~v~~ 96 (327)
T 3lzb_A 20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST---VQLITQ 96 (327)
T ss_dssp EEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS---EEEEEC
T ss_pred EEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC---ceEEEE
Confidence 67899999999999996 35554 577777433 3345678999999999999999999999998654 789999
Q ss_pred cCCCCCHHHHHhcC-CCccc
Q 003307 811 YINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w 829 (832)
|+++|+|.++++.. +.+++
T Consensus 97 ~~~~g~L~~~l~~~~~~~~~ 116 (327)
T 3lzb_A 97 LMPFGCLLDYVREHKDNIGS 116 (327)
T ss_dssp CCSSCBHHHHHHHTTTCCCH
T ss_pred ecCCCcHHHHHHhcCCCCCH
Confidence 99999999999864 34554
No 360
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=98.82 E-value=7.5e-09 Score=111.75 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=73.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC---CceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK---EHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~---~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. +|+.||||++... .......+.+|++++.+++||||+++++++.... ....++||||
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~ 95 (353)
T 2b9h_A 16 KSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQEL 95 (353)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECC
T ss_pred eeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEec
Confidence 678999999999999974 7999999999643 3334567899999999999999999999986541 1238999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
++ |+|.+++..+ .+++
T Consensus 96 ~~-~~L~~~~~~~-~~~~ 111 (353)
T 2b9h_A 96 MQ-TDLHRVISTQ-MLSD 111 (353)
T ss_dssp CS-EEHHHHHHHC-CCCH
T ss_pred cC-ccHHHHHhhc-CCCH
Confidence 98 6999998763 3443
No 361
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=98.82 E-value=9.7e-09 Score=109.60 Aligned_cols=83 Identities=23% Similarity=0.383 Sum_probs=68.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHH-HHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVK-KLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~-~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||+++.. ......++..|+. +++.++||||+++++++...+. .++||||++
T Consensus 27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~--~~lv~e~~~ 104 (327)
T 3aln_A 27 LGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGD--CWICMELMS 104 (327)
T ss_dssp -CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSE--EEEEECCCS
T ss_pred hheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCc--eEEEEeecC
Confidence 678999999999999984 8999999999654 2333456666766 6788899999999999998776 999999999
Q ss_pred CCCHHHHHh
Q 003307 814 AQSLAVYLQ 822 (832)
Q Consensus 814 ~GsL~~~l~ 822 (832)
+ +|.+++.
T Consensus 105 ~-~l~~~~~ 112 (327)
T 3aln_A 105 T-SFDKFYK 112 (327)
T ss_dssp E-EHHHHHH
T ss_pred C-ChHHHHH
Confidence 5 8888776
No 362
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=98.81 E-value=8.6e-09 Score=111.82 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=73.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||+++++++..... ...++|+||
T Consensus 32 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~ 111 (364)
T 3qyz_A 32 LSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDL 111 (364)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEEC
T ss_pred EEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcc
Confidence 678999999999999974 7899999999643 23345779999999999999999999999975431 138999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
++ |+|.+++... .+++
T Consensus 112 ~~-~~L~~~l~~~-~~~~ 127 (364)
T 3qyz_A 112 ME-TDLYKLLKTQ-HLSN 127 (364)
T ss_dssp CS-EEHHHHHHHC-CCCH
T ss_pred cC-cCHHHHHHhC-CCCH
Confidence 98 5999998764 3443
No 363
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=2.3e-09 Score=126.46 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=71.8
Q ss_pred cCeeeeccCceEEEEEEC--CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc---eEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD--SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH---EKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~---~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.|.+|++++.+++|||||+++++|...+.. ..++|||
T Consensus 85 ~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E 164 (681)
T 2pzi_A 85 KGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVME 164 (681)
T ss_dssp EEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEE
Confidence 668999999999999974 6899999998543 334456799999999999999999999999764431 1599999
Q ss_pred cCCCCCHHHHHhcCCCccc
Q 003307 811 YINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w 829 (832)
||++|+|.+++.. .++|
T Consensus 165 ~~~g~~L~~~~~~--~l~~ 181 (681)
T 2pzi_A 165 YVGGQSLKRSKGQ--KLPV 181 (681)
T ss_dssp CCCCEECC----C--CCCH
T ss_pred eCCCCcHHHHHhC--CCCH
Confidence 9999999988765 4555
No 364
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=98.80 E-value=6.6e-09 Score=116.38 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=70.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++|||||++++++...+. ...++||
T Consensus 67 ~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~ 146 (464)
T 3ttj_A 67 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVM 146 (464)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEE
T ss_pred EEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEE
Confidence 57899999999999997 47999999999643 33345678999999999999999999999975432 2479999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
|||++ +|.+.++.
T Consensus 147 E~~~~-~l~~~~~~ 159 (464)
T 3ttj_A 147 ELMDA-NLCQVIQM 159 (464)
T ss_dssp ECCSE-EHHHHHTS
T ss_pred eCCCC-CHHHHHhh
Confidence 99986 46666643
No 365
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=98.80 E-value=4e-10 Score=120.91 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=65.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC--------hhhHHHHHHHHHHHhcCC---------CCcceeeeeEEEC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI--------AKGKKEFAREVKKLGNIK---------HPNLVSLQGYYWG 799 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~f~~e~~~l~~~~---------H~niv~l~g~~~~ 799 (832)
.+.||+|+||.||+|+. +|+.||||+++... ....+.+.+|++++++++ |||||++.+.+..
T Consensus 25 ~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~ 103 (336)
T 2vuw_A 25 CEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCV 103 (336)
T ss_dssp CEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEE
T ss_pred eeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeEe
Confidence 67899999999999998 78999999985432 122467889999988885 7777777776431
Q ss_pred ------------------------------CCCceEEEEEecCCCCCHHHHHhc
Q 003307 800 ------------------------------PKEHEKLVISNYINAQSLAVYLQG 823 (832)
Q Consensus 800 ------------------------------~~~~~~~lv~e~~~~GsL~~~l~~ 823 (832)
.+. .++|||||++|++.+.+.+
T Consensus 104 ~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~--~~lv~E~~~~g~ll~~~~~ 155 (336)
T 2vuw_A 104 QGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQ--LFIVLEFEFGGIDLEQMRT 155 (336)
T ss_dssp ESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTC--EEEEEEEECCCEETGGGTT
T ss_pred cCCCcHHHHHHHHHHhhhccccccCccccccCe--EEEEEEecCCCccHHHHHh
Confidence 344 9999999999977666643
No 366
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=98.80 E-value=5.4e-09 Score=109.43 Aligned_cols=90 Identities=27% Similarity=0.398 Sum_probs=66.5
Q ss_pred cCeeeeccCceEEEEEE--CCCC--EEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL--DSGS--ILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--~~g~--~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+. .++. .||||+++.. .....+.|.+|++++.+++||||+++++++.... .++|+
T Consensus 23 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~---~~~v~ 99 (291)
T 1u46_A 23 LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP---MKMVT 99 (291)
T ss_dssp EEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS---CEEEE
T ss_pred eeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC---ceeeE
Confidence 67899999999999986 2344 6899988543 2234577999999999999999999999997644 68999
Q ss_pred ecCCCCCHHHHHhcC-CCccc
Q 003307 810 NYINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~-~~l~w 829 (832)
||+++|+|.+++... +.+++
T Consensus 100 e~~~~~~L~~~l~~~~~~~~~ 120 (291)
T 1u46_A 100 ELAPLGSLLDRLRKHQGHFLL 120 (291)
T ss_dssp ECCTTCBHHHHHHHHGGGSCH
T ss_pred ecccCCCHHHHHHhccCCcCH
Confidence 999999999999754 33444
No 367
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=98.79 E-value=1.6e-09 Score=124.47 Aligned_cols=87 Identities=24% Similarity=0.378 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEEC------CCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG------PKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~------~~~~~~~lv 808 (832)
...||+|+||.||+|.. .+|+.||||++... .....+.|.+|++++.+++|||||++++++.. .+. .++|
T Consensus 19 ~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~--~~LV 96 (676)
T 3qa8_A 19 KERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL--PLLA 96 (676)
T ss_dssp CCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS--CCCE
T ss_pred EEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe--EEEE
Confidence 67899999999999997 47999999998653 34446779999999999999999999998755 333 7999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
||||++|+|.++++...
T Consensus 97 mEy~~ggsL~~~L~~~~ 113 (676)
T 3qa8_A 97 MEYCEGGDLRKYLNQFE 113 (676)
T ss_dssp EECCSSCBHHHHHHSSS
T ss_pred EEeCCCCCHHHHHHhcc
Confidence 99999999999998644
No 368
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=98.79 E-value=1.2e-08 Score=111.06 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++++++|||||++++++...+. ...++||
T Consensus 30 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~ 109 (371)
T 2xrw_A 30 LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVM 109 (371)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEE
T ss_pred eeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEE
Confidence 678999999999999974 7899999998643 23345678999999999999999999999976541 1389999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
|||+ |+|.+++..
T Consensus 110 e~~~-~~l~~~~~~ 122 (371)
T 2xrw_A 110 ELMD-ANLCQVIQM 122 (371)
T ss_dssp ECCS-EEHHHHHHS
T ss_pred EcCC-CCHHHHHhh
Confidence 9998 578888764
No 369
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=98.78 E-value=3.4e-09 Score=114.41 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=69.7
Q ss_pred cCeeeeccCceEEEEEEC---------CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCccee---------------
Q 003307 737 AEVIGRSCHGTLYKATLD---------SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVS--------------- 792 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~---------~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~--------------- 792 (832)
.+.||+|+||.||+|+.. +|+.||||.+... +.+.+|++++.+++|||||+
T Consensus 47 ~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~ 121 (352)
T 2jii_A 47 KSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPT 121 (352)
T ss_dssp EEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCC
T ss_pred EEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCccCccc
Confidence 678999999999999974 3889999998643 35789999999999999998
Q ss_pred eeeEEECCCCceEEEEEecCCCCCHHHHHhcC--CCcccc
Q 003307 793 LQGYYWGPKEHEKLVISNYINAQSLAVYLQGK--GLVLWF 830 (832)
Q Consensus 793 l~g~~~~~~~~~~~lv~e~~~~GsL~~~l~~~--~~l~w~ 830 (832)
+++++...+. ..++||||| +|+|.+++... ..++|.
T Consensus 122 ~~~~~~~~~~-~~~lv~e~~-~~~L~~~l~~~~~~~l~~~ 159 (352)
T 2jii_A 122 CMGFGVHQDK-YRFLVLPSL-GRSLQSALDVSPKHVLSER 159 (352)
T ss_dssp CCEEEEETTT-EEEEEEECC-CEEHHHHHHHSGGGCCCHH
T ss_pred hhhccccCCc-EEEEEecCC-CcCHHHHHHhCCcCCCCHH
Confidence 6777765322 389999999 99999999875 556653
No 370
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=98.78 E-value=9.9e-09 Score=114.08 Aligned_cols=83 Identities=20% Similarity=0.162 Sum_probs=70.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
..+||+|+||+||.+...+|+.||||++... ..+.+.+|++++.++ +|||||++++++...+. .++|||||+ |
T Consensus 20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~--~~lv~E~~~-g 93 (434)
T 2rio_A 20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRF--LYIALELCN-L 93 (434)
T ss_dssp EEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSE--EEEEECCCS-E
T ss_pred cCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCe--EEEEEecCC-C
Confidence 5689999999998776668999999998543 235678999999876 89999999999987776 999999996 7
Q ss_pred CHHHHHhcCC
Q 003307 816 SLAVYLQGKG 825 (832)
Q Consensus 816 sL~~~l~~~~ 825 (832)
+|.+++...+
T Consensus 94 sL~~~l~~~~ 103 (434)
T 2rio_A 94 NLQDLVESKN 103 (434)
T ss_dssp EHHHHHHTC-
T ss_pred CHHHHHhccC
Confidence 9999998654
No 371
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=98.77 E-value=1e-08 Score=107.63 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ..+.+.+|++++.++ +|+|++++++++..... .++||||+ +
T Consensus 15 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~--~~lv~e~~-~ 89 (298)
T 1csn_A 15 GRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLH--NVLVIDLL-G 89 (298)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTE--EEEEEECC-C
T ss_pred EEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCce--eEEEEEec-C
Confidence 67899999999999996 589999999985432 234588999999999 89999999999987776 99999999 9
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.++++..+ .+++
T Consensus 90 ~~L~~~l~~~~~~~~~ 105 (298)
T 1csn_A 90 PSLEDLLDLCGRKFSV 105 (298)
T ss_dssp CBHHHHHHHTTTCCCH
T ss_pred CCHHHHHHHhccCCCH
Confidence 99999998644 3554
No 372
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=98.77 E-value=5.3e-09 Score=113.45 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=65.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|.. .+|+.||||++... .....+.+.+|++++++++||||+++++++..... ...++|+
T Consensus 34 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~ 113 (367)
T 2fst_X 34 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVT 113 (367)
T ss_dssp EEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEE
T ss_pred eeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEe
Confidence 57899999999999997 58999999998543 33345678999999999999999999999975421 2379999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
||+ +|+|.++++. +.+++
T Consensus 114 e~~-~~~L~~~~~~-~~l~~ 131 (367)
T 2fst_X 114 HLM-GADLNNIVKC-QKLTD 131 (367)
T ss_dssp ECC-CEECC------CCCCH
T ss_pred ccc-CCCHHHHHhc-CCCCH
Confidence 999 6899988865 34544
No 373
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.77 E-value=8.1e-09 Score=109.16 Aligned_cols=92 Identities=27% Similarity=0.322 Sum_probs=70.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-----hhhHHHHHHHHHHHhcC---CCCcceeeeeEEECCCCc---e
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-----AKGKKEFAREVKKLGNI---KHPNLVSLQGYYWGPKEH---E 804 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~f~~e~~~l~~~---~H~niv~l~g~~~~~~~~---~ 804 (832)
...||+|+||.||+|+. .+|+.||||++.... ......+.+|++++.++ +||||++++++|...... .
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~ 93 (308)
T 3g33_A 14 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIK 93 (308)
T ss_dssp EEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEE
T ss_pred EEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCcee
Confidence 67899999999999997 589999999885221 11234567777777766 499999999999765421 3
Q ss_pred EEEEEecCCCCCHHHHHhcCCC--ccc
Q 003307 805 KLVISNYINAQSLAVYLQGKGL--VLW 829 (832)
Q Consensus 805 ~~lv~e~~~~GsL~~~l~~~~~--l~w 829 (832)
.++||||++ |+|.+++..... ++|
T Consensus 94 ~~lv~e~~~-~~L~~~~~~~~~~~~~~ 119 (308)
T 3g33_A 94 VTLVFEHVD-QDLRTYLDKAPPPGLPA 119 (308)
T ss_dssp EEEEEECCC-CBHHHHHHTCCTTCSCH
T ss_pred EEEEehhhh-cCHHHHHhhccCCCCCH
Confidence 789999998 699999987653 554
No 374
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=98.77 E-value=8.3e-09 Score=112.76 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=67.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC--------------
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK-------------- 801 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~-------------- 801 (832)
...||+|+||.||+|+. .+|+.||||++..... .+.+|++++++++|||||++++++....
T Consensus 12 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~ 87 (383)
T 3eb0_A 12 GKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHN 87 (383)
T ss_dssp EEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC---------------
T ss_pred EEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccccccccccc
Confidence 67899999999999997 5899999999854322 2347999999999999999999985432
Q ss_pred ----------------------CceEEEEEecCCCCCHHHHHhc----CCCccc
Q 003307 802 ----------------------EHEKLVISNYINAQSLAVYLQG----KGLVLW 829 (832)
Q Consensus 802 ----------------------~~~~~lv~e~~~~GsL~~~l~~----~~~l~w 829 (832)
....++|||||+ |+|.+.++. .+.++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~ 140 (383)
T 3eb0_A 88 KLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPM 140 (383)
T ss_dssp ----------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCH
T ss_pred cccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCH
Confidence 113789999999 588777653 445554
No 375
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=98.76 E-value=2.9e-09 Score=114.60 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=67.8
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccCChh-----------hHHHHHHHHHHHhcCCCCcceeeeeEEECC-
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREGIAK-----------GKKEFAREVKKLGNIKHPNLVSLQGYYWGP- 800 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~~~~-----------~~~~f~~e~~~l~~~~H~niv~l~g~~~~~- 800 (832)
.+.||+|+||.||+|+.. ++..+|||+....... ..+.+.+|+..+..++||||+++++++...
T Consensus 42 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~ 121 (345)
T 2v62_A 42 GKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEF 121 (345)
T ss_dssp EEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEES
T ss_pred EeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeeccccccc
Confidence 678999999999999974 6789999998543211 123477889999999999999999999872
Q ss_pred -CCceEEEEEecCCCCCHHHHHhcCCCcccc
Q 003307 801 -KEHEKLVISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 801 -~~~~~~lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
+....++||||| +|+|.+++...+.++|.
T Consensus 122 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~ 151 (345)
T 2v62_A 122 KGRSYRFMVMERL-GIDLQKISGQNGTFKKS 151 (345)
T ss_dssp SSCEEEEEEEECE-EEEHHHHCBGGGBCCHH
T ss_pred CCCcEEEEEEecc-CCCHHHHHHhcCCCCHH
Confidence 122389999999 99999999876666653
No 376
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=98.76 E-value=1.4e-08 Score=108.70 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=66.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC--CceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK--EHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~--~~~~~lv~e~~~ 813 (832)
..+||+|+||.||+|+.. +|+.||||++..... .. .+....+..++||||+++++++.... ....++|||||+
T Consensus 34 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~---~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~ 109 (336)
T 3fhr_A 34 KQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK-AR---QEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECME 109 (336)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH-HH---HHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCT
T ss_pred ceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH-HH---HHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccC
Confidence 357999999999999985 799999999864321 11 22223456779999999999987521 223799999999
Q ss_pred CCCHHHHHhcCC--Cccc
Q 003307 814 AQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~--~l~w 829 (832)
+|+|.+++.... .++|
T Consensus 110 gg~L~~~l~~~~~~~l~~ 127 (336)
T 3fhr_A 110 GGELFSRIQERGDQAFTE 127 (336)
T ss_dssp TEEHHHHHHTC-CCCCBH
T ss_pred CCCHHHHHHhcCCCCCCH
Confidence 999999998764 4554
No 377
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=98.76 E-value=7.3e-09 Score=112.39 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=70.5
Q ss_pred cCeeeeccCceEEEEEECC------CCEEEEEEeccCChhh-----------HHHHHHHHHHHhcCCCCcceeeeeEEEC
Q 003307 737 AEVIGRSCHGTLYKATLDS------GSILAVKRLREGIAKG-----------KKEFAREVKKLGNIKHPNLVSLQGYYWG 799 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~------g~~vAvK~l~~~~~~~-----------~~~f~~e~~~l~~~~H~niv~l~g~~~~ 799 (832)
...||+|+||.||+|+... ++.||||++....... ...+..|+..+.+++|||||++++++..
T Consensus 40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~ 119 (364)
T 3op5_A 40 GLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLH 119 (364)
T ss_dssp EEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEE
T ss_pred EEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeeee
Confidence 6789999999999998743 4789999986543211 1234567777888999999999999876
Q ss_pred CCC--ceEEEEEecCCCCCHHHHHhcC-CCcccc
Q 003307 800 PKE--HEKLVISNYINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 800 ~~~--~~~~lv~e~~~~GsL~~~l~~~-~~l~w~ 830 (832)
... ...++||||| +|+|.++++.. +.++|.
T Consensus 120 ~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~ 152 (364)
T 3op5_A 120 DKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRK 152 (364)
T ss_dssp EETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHH
T ss_pred ccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHH
Confidence 422 2379999999 99999999875 456664
No 378
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=98.76 E-value=8.3e-09 Score=111.33 Aligned_cols=92 Identities=22% Similarity=0.225 Sum_probs=72.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC------CceEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK------EHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~------~~~~~l 807 (832)
...||+|+||.||+|+. .+|+.||||++.... ......+.+|++++.+++|||||+++++|.... ....++
T Consensus 22 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~l 101 (351)
T 3mi9_A 22 LAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYL 101 (351)
T ss_dssp EEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEE
T ss_pred EEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEE
Confidence 67899999999999998 589999999984332 223457889999999999999999999987643 123899
Q ss_pred EEecCCCCCHHHHHhcC-CCccc
Q 003307 808 ISNYINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~-~~l~w 829 (832)
|||||++ +|.+.+... ..+++
T Consensus 102 v~e~~~~-~l~~~l~~~~~~~~~ 123 (351)
T 3mi9_A 102 VFDFCEH-DLAGLLSNVLVKFTL 123 (351)
T ss_dssp EEECCSE-EHHHHHHCTTSCCCH
T ss_pred EEeccCC-CHHHHHhhccCCCCH
Confidence 9999995 787777654 34554
No 379
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.76 E-value=4.5e-11 Score=121.65 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=72.3
Q ss_pred CCCCccccCCC--cEEEEEeCC---CCCccccCcccccCCCCCCEEEcCCCCCcccCC--CCCCCCCCCE--EECCCCCC
Q 003307 55 RNWFGITCTNG--YVTSIMLND---MGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT--DIGSIQSLEF--LDLSHNLF 125 (832)
Q Consensus 55 ~~w~gv~C~~~--~v~~l~l~~---~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~--L~Ls~N~l 125 (832)
|.|.|+.|+.. +|+.+...+ .++.|.+.+..+..++. .|...+|..++.+. .+...+.|+. ++++.|..
T Consensus 78 ~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 78 KAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 48999999732 554444433 23334443333322222 12222222222222 2444444544 55666633
Q ss_pred C---ccCcccccCCCCCCEEEcccccccc--cCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCC--CCCEEECccCcCc
Q 003307 126 H---GLIPSGIVSLKNLMLLNISSNSFEG--TFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLG--SVVHVDLSNNQFS 198 (832)
Q Consensus 126 ~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~--~L~~L~Ls~N~l~ 198 (832)
. +.++....++++|++|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.
T Consensus 156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 2 2222222456677777777777765 3345555667777777777776654 2233333 6666666666666
Q ss_pred ccc
Q 003307 199 GSL 201 (832)
Q Consensus 199 ~~~ 201 (832)
+.+
T Consensus 234 ~~~ 236 (267)
T 3rw6_A 234 DTF 236 (267)
T ss_dssp GGC
T ss_pred ccc
Confidence 543
No 380
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=5.5e-09 Score=112.17 Aligned_cols=143 Identities=14% Similarity=0.146 Sum_probs=73.5
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhh--cCCCCCEEECcc--CcCccccCC-
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLS--QLGSVVHVDLSN--NQFSGSLDL- 203 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~Ls~--N~l~~~~~~- 203 (832)
+...+..+++|+.|+|++|.-. .++. +. +++|++|+|..|.++......+. .+++|++|+|+. |...+....
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3445667788888888877311 1233 43 78899999988887655445554 688898888853 222111000
Q ss_pred CCC---CCCCCCCccEEECCCCCCeeccCCCC-CCCCCCCcCEEEccCCccccc----CC-CccccccccEEEccccCCC
Q 003307 204 GLG---DSSFISSIQYLNISENSLVGELFPHD-GMPYFDNLEVFDASNNHLVGA----IP-SFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 204 ~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~----~~-~~~~l~~L~~L~L~~N~l~ 274 (832)
.+. ....+++|+.|+|.+|.+.+...... ....+++|+.|+|+.|.+.+. ++ .+..+++|+.|+|++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 000 00123556666665555543211000 011344555555555555432 11 2234455555555555544
No 381
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=98.75 E-value=2.2e-09 Score=114.19 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=74.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+... .||||+++... ....+.|.+|++++.+++||||+++++++...+. .++|+||+++
T Consensus 38 ~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~iv~e~~~~ 113 (319)
T 2y4i_B 38 GELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH--LAIITSLCKG 113 (319)
T ss_dssp CCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSC--EEEECBCCCS
T ss_pred eeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCc--eEEEeecccC
Confidence 6789999999999999753 49999985432 2223568899999999999999999999998877 9999999999
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.++++..+ .+++
T Consensus 114 ~~L~~~l~~~~~~~~~ 129 (319)
T 2y4i_B 114 RTLYSVVRDAKIVLDV 129 (319)
T ss_dssp EEHHHHTTSSCCCCCS
T ss_pred CcHHHHHHhcCCCCCH
Confidence 99999998654 4554
No 382
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=98.74 E-value=1.3e-08 Score=110.63 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc----eEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH----EKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~----~~~lv~ 809 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||++++++|...+.. ..++||
T Consensus 47 ~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~ 126 (371)
T 4exu_A 47 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVM 126 (371)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEE
T ss_pred EeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEE
Confidence 678999999999999974 7999999999643 233457789999999999999999999999876541 139999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||++ |+|.+++..
T Consensus 127 e~~~-~~l~~~~~~ 139 (371)
T 4exu_A 127 PFMQ-TDLQKIMGM 139 (371)
T ss_dssp ECCC-EEHHHHTTS
T ss_pred cccc-ccHHHHhhc
Confidence 9999 689887643
No 383
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=98.73 E-value=2e-08 Score=107.57 Aligned_cols=85 Identities=26% Similarity=0.298 Sum_probs=65.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHH--HhcCCCCcceeeeeEEEC---CCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKK--LGNIKHPNLVSLQGYYWG---PKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~--l~~~~H~niv~l~g~~~~---~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+. +|+.||||++.... ...+..|.++ +..++||||+++++++.. .+....++||||
T Consensus 18 ~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~ 93 (336)
T 3g2f_A 18 LELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEY 93 (336)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECC
T ss_pred eeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEec
Confidence 67899999999999987 68999999986432 3445555555 456899999999986642 222236899999
Q ss_pred CCCCCHHHHHhcCC
Q 003307 812 INAQSLAVYLQGKG 825 (832)
Q Consensus 812 ~~~GsL~~~l~~~~ 825 (832)
|++|+|.++++...
T Consensus 94 ~~~g~L~~~l~~~~ 107 (336)
T 3g2f_A 94 YPNGSLXKYLSLHT 107 (336)
T ss_dssp CTTCBHHHHHHHCC
T ss_pred CCCCcHHHHHhhcc
Confidence 99999999997654
No 384
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=98.72 E-value=1.1e-08 Score=108.91 Aligned_cols=92 Identities=27% Similarity=0.333 Sum_probs=68.6
Q ss_pred cCeeeeccCceEEEEEE--CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcC---CCCcceeeeeEEEC---CCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL--DSGSILAVKRLREGI--AKGKKEFAREVKKLGNI---KHPNLVSLQGYYWG---PKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~---~H~niv~l~g~~~~---~~~~~~~ 806 (832)
...||+|+||.||+|+. .+|+.||||+++... ......+.+|++++.++ +||||++++++|.. ......+
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~ 95 (326)
T 1blx_A 16 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT 95 (326)
T ss_dssp EEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEE
T ss_pred eeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEE
Confidence 67899999999999997 468899999885321 11223466777776655 89999999999872 1222389
Q ss_pred EEEecCCCCCHHHHHhcCC--Cccc
Q 003307 807 VISNYINAQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~--~l~w 829 (832)
+||||++ |+|.+++.... .+++
T Consensus 96 lv~e~~~-~~L~~~l~~~~~~~~~~ 119 (326)
T 1blx_A 96 LVFEHVD-QDLTTYLDKVPEPGVPT 119 (326)
T ss_dssp EEEECCS-CBHHHHHHHSCTTCSCH
T ss_pred EEEecCC-CCHHHHHHhcccCCCCH
Confidence 9999999 69999998643 2554
No 385
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=98.69 E-value=1.9e-08 Score=111.50 Aligned_cols=83 Identities=22% Similarity=0.255 Sum_probs=68.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.++||+|+||+||.....+|+.||||++..... ..+.+|++++.++ +|||||++++++...+. .++|||||+ |
T Consensus 29 ~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~--~~lv~E~~~-g 102 (432)
T 3p23_A 29 KDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQF--QYIAIELCA-A 102 (432)
T ss_dssp EEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTE--EEEEEECCS-E
T ss_pred CCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCE--EEEEEECCC-C
Confidence 678999999996655556899999999854322 2356899999999 89999999999987776 999999997 6
Q ss_pred CHHHHHhcCC
Q 003307 816 SLAVYLQGKG 825 (832)
Q Consensus 816 sL~~~l~~~~ 825 (832)
+|.+++....
T Consensus 103 ~L~~~l~~~~ 112 (432)
T 3p23_A 103 TLQEYVEQKD 112 (432)
T ss_dssp EHHHHHHSSS
T ss_pred CHHHHHHhcC
Confidence 9999998654
No 386
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=98.69 E-value=1.4e-08 Score=109.67 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=70.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc----eEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH----EKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~----~~~lv~ 809 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||+++++++...+.. ..++||
T Consensus 29 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~ 108 (353)
T 3coi_A 29 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVM 108 (353)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEE
T ss_pred eeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEe
Confidence 678999999999999974 7999999998543 233356789999999999999999999999765431 249999
Q ss_pred ecCCCCCHHHHHh
Q 003307 810 NYINAQSLAVYLQ 822 (832)
Q Consensus 810 e~~~~GsL~~~l~ 822 (832)
||++ |+|.+++.
T Consensus 109 e~~~-~~l~~~~~ 120 (353)
T 3coi_A 109 PFMQ-TDLQKIMG 120 (353)
T ss_dssp ECCS-EEGGGTTT
T ss_pred cccc-CCHHHHhc
Confidence 9998 68877654
No 387
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=98.67 E-value=3.8e-08 Score=109.12 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcC------CCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNI------KHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~------~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +|+.||||+++.. ....+++.+|++++..+ .|+||+++++++...+. .++||
T Consensus 102 ~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~--~~lv~ 178 (429)
T 3kvw_A 102 LKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH--ICMTF 178 (429)
T ss_dssp EEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE--EEEEE
T ss_pred EEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe--EEEEE
Confidence 578999999999999874 7899999999653 23346678888888766 67799999999988776 99999
Q ss_pred ecCCCCCHHHHHhcCC--Ccccc
Q 003307 810 NYINAQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~--~l~w~ 830 (832)
|||+ |+|.+++.... .++|.
T Consensus 179 e~~~-~~L~~~l~~~~~~~~~~~ 200 (429)
T 3kvw_A 179 ELLS-MNLYELIKKNKFQGFSLP 200 (429)
T ss_dssp CCCC-CBHHHHHHHTTTCCCCHH
T ss_pred eccC-CCHHHHHHhccCCCCCHH
Confidence 9997 69999998654 35553
No 388
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=98.67 E-value=2.8e-08 Score=109.95 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=64.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC----CceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK----EHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~----~~~~~lv~e~ 811 (832)
.++||+|+||.||+|+.. +|+.||||++.... +.+.+|++++++++|||||+++++|.... ....++||||
T Consensus 59 ~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~ 134 (420)
T 1j1b_A 59 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY 134 (420)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred eeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhc
Confidence 578999999999999984 79999999985432 22347999999999999999999985421 1126799999
Q ss_pred CCCCCHHHHHh
Q 003307 812 INAQSLAVYLQ 822 (832)
Q Consensus 812 ~~~GsL~~~l~ 822 (832)
|++ ++.+.+.
T Consensus 135 ~~~-~l~~~~~ 144 (420)
T 1j1b_A 135 VPE-TVYRVAR 144 (420)
T ss_dssp CCE-EHHHHHH
T ss_pred ccc-cHHHHHH
Confidence 996 6666654
No 389
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=98.66 E-value=3.5e-08 Score=103.52 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=71.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|+.||||++..... .+++.+|++++.+++|+++++.+++|...+. ..++||||+ +|
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~-~~~lv~e~~-~~ 89 (296)
T 3uzp_A 14 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGD-YNVMVMELL-GP 89 (296)
T ss_dssp EEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETT-EEEEEEECC-CC
T ss_pred EEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCC-ceEEEEEec-CC
Confidence 67899999999999997 5899999999854332 2468899999999999998887777754332 389999999 89
Q ss_pred CHHHHHhc-CCCccc
Q 003307 816 SLAVYLQG-KGLVLW 829 (832)
Q Consensus 816 sL~~~l~~-~~~l~w 829 (832)
+|.++++. ++.+++
T Consensus 90 ~L~~~~~~~~~~~~~ 104 (296)
T 3uzp_A 90 SLEDLFNFCSRKFSL 104 (296)
T ss_dssp BHHHHHHHTTTCCCH
T ss_pred CHHHHHHhhccCCCH
Confidence 99999974 345554
No 390
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.65 E-value=2.5e-06 Score=92.77 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=47.1
Q ss_pred cCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 353 GNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 353 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
+..|+.+.+..+ ++.+....|.++.+|+.+.+.++.++.....+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 334555555433 44344455666666666666666666555566666666666666543 4444555666666666665
Q ss_pred ccC
Q 003307 433 LSG 435 (832)
Q Consensus 433 Ls~ 435 (832)
+..
T Consensus 340 ip~ 342 (379)
T 4h09_A 340 YPK 342 (379)
T ss_dssp CCT
T ss_pred ECC
Confidence 543
No 391
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=3.3e-09 Score=113.89 Aligned_cols=202 Identities=15% Similarity=0.182 Sum_probs=131.0
Q ss_pred CCcEEEEEeCCCCCcc-ccC------cccccCCCCCCEEEcCCCCCc---------ccCC-CCCCCCCCCEEECCCCC-C
Q 003307 64 NGYVTSIMLNDMGLVG-NFS------FPTIIGLKMLCNVSVSNNQLM---------GNIT-DIGSIQSLEFLDLSHNL-F 125 (832)
Q Consensus 64 ~~~v~~l~l~~~~l~g-~~~------~~~~~~l~~L~~L~Ls~n~l~---------~~~~-~~~~l~~L~~L~Ls~N~-l 125 (832)
..+|++|.+...+..| ... ..++..+++|+.|.+..+... +.+. .+..+++|+.|+|++|. +
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4568888888766543 110 123556889999999765431 1122 34678999999999883 3
Q ss_pred CccCcccccCCCCCCEEEcccccccccCCCCCC--CCCCCCEeeCcC--CCCCCc-----cchhh--hcCCCCCEEECcc
Q 003307 126 HGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFG--GLGKLKYLDLRA--NRFGGD-----IMHLL--SQLGSVVHVDLSN 194 (832)
Q Consensus 126 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~-----~~~~l--~~l~~L~~L~Ls~ 194 (832)
+ ++. +. +++|++|+|..|.++......+. .+++|++|+|+. |...+. +...+ ..+++|++|+|.+
T Consensus 186 ~--l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 186 S--IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp B--CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred e--ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 2 232 43 88999999999988754333343 789999999863 222211 11223 2578999999999
Q ss_pred CcCccccCCCCCCCCCCCCccEEECCCCCCeec----cCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcc
Q 003307 195 NQFSGSLDLGLGDSSFISSIQYLNISENSLVGE----LFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLG 269 (832)
Q Consensus 195 N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~ 269 (832)
|.+.+.....+.....+++|+.|+|+.|.+.+. ++.. +..+++|+.|+++.|.++...- .+...- ...++++
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~--L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~ 338 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH--VDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVS 338 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT--HHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECC
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh--cccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEec
Confidence 998754333333223468999999999999763 2222 4567899999999998874322 222100 2457777
Q ss_pred ccC
Q 003307 270 SNQ 272 (832)
Q Consensus 270 ~N~ 272 (832)
.++
T Consensus 339 ~~~ 341 (362)
T 2ra8_A 339 DSQ 341 (362)
T ss_dssp SBC
T ss_pred CCc
Confidence 765
No 392
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=98.64 E-value=2e-08 Score=114.29 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=62.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC---h-----hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI---A-----KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~---~-----~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.++||+|+||.||+|.. .+..+|+|+..... . ...+.|.+|++++.+++|||||++..|+...+. .++|
T Consensus 341 ~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~--~~lV 417 (540)
T 3en9_A 341 EHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDN--KRIM 417 (540)
T ss_dssp -------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTT--TEEE
T ss_pred CCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCc--cEEE
Confidence 57899999999999965 57899999863321 1 113458999999999999999977777776666 8999
Q ss_pred EecCCCCCHHHHHhc
Q 003307 809 SNYINAQSLAVYLQG 823 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~ 823 (832)
||||++|+|.++++.
T Consensus 418 mE~~~ggsL~~~l~~ 432 (540)
T 3en9_A 418 MSYINGKLAKDVIED 432 (540)
T ss_dssp EECCCSEEHHHHSTT
T ss_pred EECCCCCCHHHHHHH
Confidence 999999999998765
No 393
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=98.64 E-value=9.6e-09 Score=109.25 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=75.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCC--CCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA------KGKKEFAREVKKLGNIK--HPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~--H~niv~l~g~~~~~~~~~~~l 807 (832)
...||+|+||.||+|+. .+|+.||||+++.... ...+.+.+|++++.+++ |+||+++++++...+. .++
T Consensus 48 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~--~~l 125 (320)
T 3a99_A 48 GPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS--FVL 125 (320)
T ss_dssp EEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE--EEE
T ss_pred EEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCc--EEE
Confidence 67899999999999997 5889999999854311 12245778999999996 5999999999998776 999
Q ss_pred EEecCCC-CCHHHHHhcCCCccc
Q 003307 808 ISNYINA-QSLAVYLQGKGLVLW 829 (832)
Q Consensus 808 v~e~~~~-GsL~~~l~~~~~l~w 829 (832)
|+||+.+ |+|.+++..++.+++
T Consensus 126 v~e~~~~~~~L~~~l~~~~~l~~ 148 (320)
T 3a99_A 126 ILERPEPVQDLFDFITERGALQE 148 (320)
T ss_dssp EEECCSSEEEHHHHHHHHCSCCH
T ss_pred EEEcCCCCccHHHHHhccCCCCH
Confidence 9999986 899999987766665
No 394
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=98.64 E-value=4.9e-08 Score=106.13 Aligned_cols=86 Identities=9% Similarity=0.029 Sum_probs=57.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHH---HHHHhcCCCCcceeee-------eEEECCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFARE---VKKLGNIKHPNLVSLQ-------GYYWGPKE 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e---~~~l~~~~H~niv~l~-------g~~~~~~~ 802 (832)
...||+|+||.||+|+.. +|+.||||++..... ...+.+.+| ++.+++ +|||||+++ +++.....
T Consensus 67 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~~~~~~ 145 (371)
T 3q60_A 67 VEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAVAVQSQ 145 (371)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEEEETTS
T ss_pred eeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehheecCCC
Confidence 678999999999999974 899999999965432 234567777 455666 799988755 33332211
Q ss_pred ---------------ceEEEEEecCCCCCHHHHHhcC
Q 003307 803 ---------------HEKLVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 803 ---------------~~~~lv~e~~~~GsL~~~l~~~ 824 (832)
...++|||||+ |+|.++++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~ 181 (371)
T 3q60_A 146 PPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL 181 (371)
T ss_dssp CSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH
T ss_pred CCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh
Confidence 23799999999 8999999853
No 395
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=98.63 E-value=3.9e-08 Score=105.23 Aligned_cols=85 Identities=13% Similarity=0.242 Sum_probs=71.8
Q ss_pred cCeeeeccCceEEEEEE--CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCc------ceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL--DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPN------LVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~n------iv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+|+.||||+++.. ....+.+.+|++++.+++|++ ++++++++...+. .++|
T Consensus 19 ~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~--~~lv 95 (339)
T 1z57_A 19 VDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH--ICIV 95 (339)
T ss_dssp EEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE--EEEE
T ss_pred EEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc--EEEE
Confidence 67899999999999986 37899999999643 234567889999998887665 9999999987776 9999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
|||+ +|+|.+++...+
T Consensus 96 ~e~~-~~~l~~~l~~~~ 111 (339)
T 1z57_A 96 FELL-GLSTYDFIKENG 111 (339)
T ss_dssp EECC-CCBHHHHHHHTT
T ss_pred EcCC-CCCHHHHHHhcC
Confidence 9999 899999998765
No 396
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=98.63 E-value=3.9e-08 Score=107.90 Aligned_cols=91 Identities=10% Similarity=0.115 Sum_probs=70.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC--------CCcceeeeeEEECC--CCceE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK--------HPNLVSLQGYYWGP--KEHEK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~--------H~niv~l~g~~~~~--~~~~~ 805 (832)
...||+|+||.||+|+. .+|+.||||+++.. ....+.+.+|++++.+++ |+||+++++++... +....
T Consensus 42 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~ 120 (397)
T 1wak_A 42 IRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHI 120 (397)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEE
T ss_pred EEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceE
Confidence 56899999999999987 47899999999643 334567899999999886 88899999998732 11238
Q ss_pred EEEEecCCCCCHHHHHhcC--CCccc
Q 003307 806 LVISNYINAQSLAVYLQGK--GLVLW 829 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~--~~l~w 829 (832)
++||||| +|+|.+++... +.+++
T Consensus 121 ~lv~e~~-~~~l~~~~~~~~~~~~~~ 145 (397)
T 1wak_A 121 CMVFEVL-GHHLLKWIIKSNYQGLPL 145 (397)
T ss_dssp EEEECCC-CCBHHHHHHHTTTSCCCH
T ss_pred EEEEecc-CccHHHHHHhcccCCCCH
Confidence 9999999 56777776544 34554
No 397
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=98.63 E-value=2.8e-08 Score=107.57 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=55.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC-----ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE-----HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~-----~~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++..... ....+.+|++.+.+++|||||+++++|..... ...++|||
T Consensus 28 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e 106 (360)
T 3e3p_A 28 ERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVME 106 (360)
T ss_dssp C----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEE
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEee
Confidence 678999999999999984 799999998854322 23456788888999999999999999865322 12689999
Q ss_pred cCCCCCHHHHH
Q 003307 811 YINAQSLAVYL 821 (832)
Q Consensus 811 ~~~~GsL~~~l 821 (832)
|+++ +|.+.+
T Consensus 107 ~~~~-~l~~~~ 116 (360)
T 3e3p_A 107 YVPD-TLHRCC 116 (360)
T ss_dssp CCSC-BHHHHH
T ss_pred cccc-cHHHHH
Confidence 9996 554443
No 398
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=98.62 E-value=6.9e-08 Score=102.38 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=62.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhh-HHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKG-KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~-~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||++.... ... .+.+.++..++..++||||+++++++...+. .++||||+
T Consensus 30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~--~~lv~e~~- 106 (318)
T 2dyl_A 30 LGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTD--VFIAMELM- 106 (318)
T ss_dssp EEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEECCC-
T ss_pred cceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCc--EEEEEecc-
Confidence 568999999999999985 89999999996442 222 2334555567888999999999999998776 99999999
Q ss_pred CCCHHHHHhc-CCCccc
Q 003307 814 AQSLAVYLQG-KGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~-~~~l~w 829 (832)
++.+..+... ...+++
T Consensus 107 ~~~~~~l~~~~~~~~~~ 123 (318)
T 2dyl_A 107 GTCAEKLKKRMQGPIPE 123 (318)
T ss_dssp SEEHHHHHHHHTSCCCH
T ss_pred CCcHHHHHHHhccCCCH
Confidence 4556555443 344444
No 399
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.59 E-value=3.9e-06 Score=91.22 Aligned_cols=78 Identities=12% Similarity=0.160 Sum_probs=36.3
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
.|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.++.+...+|.++.+|+.++|.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 4444544433 33333444555555555555432 332333444555555555555554444444445555555554443
No 400
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=98.59 E-value=5.6e-08 Score=101.88 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=70.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|+.||||++..... .+++.+|++++.+++|++++..+++|...+. ..++||||+ +|
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~-~~~lv~e~~-~~ 89 (296)
T 4hgt_A 14 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGD-YNVMVMELL-GP 89 (296)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETT-EEEEEEECC-CC
T ss_pred eeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCC-ceEEEEEcc-CC
Confidence 67899999999999997 5899999998744322 2358899999999999998888877754332 389999999 99
Q ss_pred CHHHHHhc-CCCcccc
Q 003307 816 SLAVYLQG-KGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~-~~~l~w~ 830 (832)
+|.+++.. .+.++|.
T Consensus 90 ~L~~~~~~~~~~~~~~ 105 (296)
T 4hgt_A 90 SLEDLFNFCSRKFSLK 105 (296)
T ss_dssp BHHHHHHHTTSCCCHH
T ss_pred CHHHHHHHhcCCCCHH
Confidence 99999984 3445553
No 401
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=98.57 E-value=1e-07 Score=106.82 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=69.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcc-eeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNL-VSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~ni-v~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+. .+|+.||||++..... ..++..|++++..++|++. +.+..++...+. .++||||+ +
T Consensus 12 ~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~--~~lvme~~-g 86 (483)
T 3sv0_A 12 GRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDY--NVLVMDLL-G 86 (483)
T ss_dssp CCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTE--EEEEEECC-C
T ss_pred EEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCE--EEEEEECC-C
Confidence 67899999999999997 5899999998754322 2358899999999988554 455555555554 89999999 8
Q ss_pred CCHHHHHhc-CCCcccc
Q 003307 815 QSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~-~~~l~w~ 830 (832)
|+|.++++. .+.++|.
T Consensus 87 ~sL~~ll~~~~~~l~~~ 103 (483)
T 3sv0_A 87 PSLEDLFNFCSRKLSLK 103 (483)
T ss_dssp CBHHHHHHHTTTCCCHH
T ss_pred CCHHHHHHhhcCCCCHH
Confidence 999999985 4456654
No 402
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=98.52 E-value=1.4e-07 Score=102.93 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=71.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CC-----cceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HP-----NLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~-----niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+.. +|+.||||+++.. ....+++..|++++..++ |+ +++++++++...+. .++||
T Consensus 59 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~--~~lv~ 135 (382)
T 2vx3_A 59 DSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH--LCLVF 135 (382)
T ss_dssp EEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE--EEEEE
T ss_pred EEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc--eEEEE
Confidence 678999999999999974 7899999999643 233566788888888774 44 49999999988776 99999
Q ss_pred ecCCCCCHHHHHhcCC--Cccc
Q 003307 810 NYINAQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~--~l~w 829 (832)
||++ |+|.+++.... .++|
T Consensus 136 e~~~-~~L~~~l~~~~~~~~~~ 156 (382)
T 2vx3_A 136 EMLS-YNLYDLLRNTNFRGVSL 156 (382)
T ss_dssp ECCC-CBHHHHHHHTTTSCCCH
T ss_pred ecCC-CCHHHHHhhcCcCCCCH
Confidence 9997 59999998653 4554
No 403
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=98.52 E-value=7.1e-08 Score=104.86 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-----------CCcceeeeeEEECCCC--
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-----------HPNLVSLQGYYWGPKE-- 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-----------H~niv~l~g~~~~~~~-- 802 (832)
...||+|+||.||+|+. .+|+.||||++... ....+.+.+|++++.+++ ||||+++++++...+.
T Consensus 24 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 102 (373)
T 1q8y_A 24 VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNG 102 (373)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTE
T ss_pred EEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCC
Confidence 67899999999999997 58999999999643 234567889999998886 8999999999875431
Q ss_pred ceEEEEEecCCCCCHHHHHhcC
Q 003307 803 HEKLVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 803 ~~~~lv~e~~~~GsL~~~l~~~ 824 (832)
...++||||+ +|+|.+++...
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~~ 123 (373)
T 1q8y_A 103 VHVVMVFEVL-GENLLALIKKY 123 (373)
T ss_dssp EEEEEEECCC-CEEHHHHHHHT
T ss_pred ceEEEEEecC-CCCHHHHHHHh
Confidence 1389999999 89999999763
No 404
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=98.51 E-value=8.9e-08 Score=104.89 Aligned_cols=79 Identities=22% Similarity=0.416 Sum_probs=61.3
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~e~~ 812 (832)
..+||+|+||.||+|+...+..||||++..... ...+|++++++++|||||+++++|..... ...++|||||
T Consensus 45 ~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~ 120 (394)
T 4e7w_A 45 CKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYV 120 (394)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECC
T ss_pred eEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeecc
Confidence 678999999999999987666799998854322 12379999999999999999999864332 1267999999
Q ss_pred CCCCHHH
Q 003307 813 NAQSLAV 819 (832)
Q Consensus 813 ~~GsL~~ 819 (832)
+++.+..
T Consensus 121 ~~~l~~~ 127 (394)
T 4e7w_A 121 PETVYRA 127 (394)
T ss_dssp SEEHHHH
T ss_pred CccHHHH
Confidence 9754433
No 405
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=3e-08 Score=95.96 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=82.5
Q ss_pred ccccCCCCCCEEEcCCC-CCccc----CC-CCCCCCCCCEEECCCCCCCcc----CcccccCCCCCCEEEccccccccc-
Q 003307 84 PTIIGLKMLCNVSVSNN-QLMGN----IT-DIGSIQSLEFLDLSHNLFHGL----IPSGIVSLKNLMLLNISSNSFEGT- 152 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n-~l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~- 152 (832)
..+...+.|++|+|++| .+... +. .+...++|++|+|++|.|... +...+...+.|++|+|++|.|+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566788888888888 77643 12 456678888999999888753 234455567888888888888753
Q ss_pred ---CCCCCCCCCCCCEeeC--cCCCCCCc----cchhhhcCCCCCEEECccCcCc
Q 003307 153 ---FPSGFGGLGKLKYLDL--RANRFGGD----IMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 153 ---~p~~~~~l~~L~~L~L--~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+...+...++|++|+| ++|.|+.. +...+...++|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456677788888888 77888754 3345566678888888888775
No 406
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=1.6e-08 Score=102.76 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=78.0
Q ss_pred cccCCCCCCE--EEcCCCCCc---ccCC-CCCCCCCCCEEECCCCCCCcc--CcccccCCCCCCEEEcccccccccCCCC
Q 003307 85 TIIGLKMLCN--VSVSNNQLM---GNIT-DIGSIQSLEFLDLSHNLFHGL--IPSGIVSLKNLMLLNISSNSFEGTFPSG 156 (832)
Q Consensus 85 ~~~~l~~L~~--L~Ls~n~l~---~~~~-~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 156 (832)
.+...+.|.. ++++.|... +..+ ....+++|+.|+|++|+|+++ +|..+..+++|+.|+|++|+|++. ..
T Consensus 136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 3444455555 677777433 2222 225689999999999999984 456778899999999999999975 33
Q ss_pred CCCCC--CCCEeeCcCCCCCCccc-------hhhhcCCCCCEEE
Q 003307 157 FGGLG--KLKYLDLRANRFGGDIM-------HLLSQLGSVVHVD 191 (832)
Q Consensus 157 ~~~l~--~L~~L~L~~N~l~~~~~-------~~l~~l~~L~~L~ 191 (832)
+..+. +|++|+|++|.+.+.+| ..+..+++|+.||
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 44444 99999999999987554 3578899999887
No 407
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.44 E-value=1.3e-07 Score=108.28 Aligned_cols=89 Identities=10% Similarity=-0.052 Sum_probs=65.3
Q ss_pred eeeccCceEEEEE-ECCCCEEEEEEeccCC----------hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEE
Q 003307 740 IGRSCHGTLYKAT-LDSGSILAVKRLREGI----------AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 740 iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~----------~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~l 807 (832)
.+.|+.|.+++++ +-.|+.+|||.+.... ....++|.+|+++|+++ .|+||+++++|+.+... .||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~--~yL 319 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQS--GWL 319 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSE--EEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCE--EEE
Confidence 4556666666554 2368999999985321 12346799999999999 79999999999998777 999
Q ss_pred EEecCCCCCHHHHHhcCCCcccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||||++||+|.++|...+.++.+
T Consensus 320 VMEyv~G~~L~d~i~~~~~l~~~ 342 (569)
T 4azs_A 320 VMEKLPGRLLSDMLAAGEEIDRE 342 (569)
T ss_dssp EEECCCSEEHHHHHHTTCCCCHH
T ss_pred EEecCCCCcHHHHHHhCCCCCHH
Confidence 99999999999999988877643
No 408
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=98.44 E-value=2.6e-07 Score=99.49 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=71.3
Q ss_pred cCeeeeccCceEEEEEEC-CC-CEEEEEEeccCChhhHHHHHHHHHHHhcCCCCc------ceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SG-SILAVKRLREGIAKGKKEFAREVKKLGNIKHPN------LVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g-~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~n------iv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+.. ++ +.||||+++.. ....+.+.+|++++.+++|++ ++.+++++...+. .++|
T Consensus 24 ~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~lv 100 (355)
T 2eu9_A 24 VGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH--MCIA 100 (355)
T ss_dssp EEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE--EEEE
T ss_pred EEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe--EEEE
Confidence 678999999999999974 44 68999999643 234567889999999888776 8999999987776 9999
Q ss_pred EecCCCCCHHHHHhcCC--Cccc
Q 003307 809 SNYINAQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~--~l~w 829 (832)
|||+ +|++.+++.... .++|
T Consensus 101 ~e~~-~~~l~~~l~~~~~~~~~~ 122 (355)
T 2eu9_A 101 FELL-GKNTFEFLKENNFQPYPL 122 (355)
T ss_dssp EECC-CCBHHHHHHHTTTCCCCH
T ss_pred Eecc-CCChHHHHHhccCCCCCH
Confidence 9999 567888776553 4554
No 409
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=98.44 E-value=1.7e-07 Score=97.25 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=61.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCCh------------------hhHHHHHHHHHHHhcCCCCcceeeeeEEE
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA------------------KGKKEFAREVKKLGNIKHPNLVSLQGYYW 798 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~------------------~~~~~f~~e~~~l~~~~H~niv~l~g~~~ 798 (832)
.+.||+|+||.||+|+..+|+.||||.++.... .....|.+|++++.+++ | +++.+++.
T Consensus 95 ~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~~~~ 171 (282)
T 1zar_A 95 GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPKVYA 171 (282)
T ss_dssp EEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCCEEE
T ss_pred cCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCeEEe
Confidence 478999999999999997899999999853221 13467999999999999 4 66666554
Q ss_pred CCCCceEEEEEecCCCCCHHH
Q 003307 799 GPKEHEKLVISNYINAQSLAV 819 (832)
Q Consensus 799 ~~~~~~~~lv~e~~~~GsL~~ 819 (832)
. +. .++|||||++|+|.+
T Consensus 172 ~-~~--~~lvmE~~~g~~L~~ 189 (282)
T 1zar_A 172 W-EG--NAVLMELIDAKELYR 189 (282)
T ss_dssp E-ET--TEEEEECCCCEEGGG
T ss_pred c-cc--eEEEEEecCCCcHHH
Confidence 3 33 699999999999987
No 410
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=3.3e-07 Score=88.56 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=56.3
Q ss_pred ccCCCCCCEEEccCC-cCCCC----cccccCCCCCCCEEEccCCcccccC----cccccCCCCCCeEeccCCcccccCCc
Q 003307 374 TSQFLRLTSFKVSNN-SLEGD----LPAVLGTYPELKVIDLSLNHLNGFL----LPSFFTSTKLTDLNLSGNNFSGPLPL 444 (832)
Q Consensus 374 ~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~ 444 (832)
+...++|++|+|++| .|... +...+...++|++|+|++|.|.... ...+...+.|++|+|++|.|+..--.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344555555666555 55422 2333444556666666666664321 22233445666666666665531100
Q ss_pred ccccCCCCCcccCcccccEEEc--cCCcCcccC----ChhhhcCCCCCEEeCcCCcCc
Q 003307 445 QEIQNNPSTGSTQNLSLTSLDL--AYNSLSGRL----LPGISKFHNLVYLNLSNNKFE 496 (832)
Q Consensus 445 ~~~~~~~~~~~~~~~~L~~L~L--s~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~ 496 (832)
.+... ...+.+|++|+| ++|.|+... ...+...+.|+.|+|++|.+.
T Consensus 112 ~l~~~-----L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEA-----LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHG-----GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-----HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 00000 001113666666 556665432 223344466666666666653
No 411
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=97.90 E-value=7.6e-06 Score=83.63 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=58.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCE--EEEEEeccCCh------------------------hhHHHHHHHHHHHhcCCCCc
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSI--LAVKRLREGIA------------------------KGKKEFAREVKKLGNIKHPN 789 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~--vAvK~l~~~~~------------------------~~~~~f~~e~~~l~~~~H~n 789 (832)
...||+|+||.||+|+. .+|+. ||||+++.... .....+.+|++.+.+++|++
T Consensus 52 ~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~ 131 (258)
T 1zth_A 52 GGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAG 131 (258)
T ss_dssp EEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCC
Confidence 46799999999999998 68999 99998743211 11236889999999998886
Q ss_pred c--eeeeeEEECCCCceEEEEEecCCC-C----CHHHHHh
Q 003307 790 L--VSLQGYYWGPKEHEKLVISNYINA-Q----SLAVYLQ 822 (832)
Q Consensus 790 i--v~l~g~~~~~~~~~~~lv~e~~~~-G----sL~~~l~ 822 (832)
+ ...+++ .. .+|||||+.+ | +|.++..
T Consensus 132 i~~p~~~~~----~~--~~lVmE~~g~~g~~~~~L~~~~~ 165 (258)
T 1zth_A 132 VSVPQPYTY----MK--NVLLMEFIGEDELPAPTLVELGR 165 (258)
T ss_dssp CCCCCEEEE----ET--TEEEEECCEETTEECCBHHHHGG
T ss_pred CCCCeEEEc----CC--CEEEEEecCCCCCccccHHHHhh
Confidence 5 333332 23 6899999952 4 7777643
No 412
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=6.8e-06 Score=77.29 Aligned_cols=82 Identities=9% Similarity=0.077 Sum_probs=34.3
Q ss_pred CCCEEECCCCCCCccCcccccCCCCCCEEEccccc-ccccCCCCCCCC----CCCCEeeCcCCC-CCCccchhhhcCCCC
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS-FEGTFPSGFGGL----GKLKYLDLRANR-FGGDIMHLLSQLGSV 187 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~~~~l~~l~~L 187 (832)
.|++|||+++.|+..--..+.++++|++|+|++|. |+..--..+..+ ++|++|+|++|. |+..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443333334444445555554442 332211122222 235555555442 443333334444455
Q ss_pred CEEECccC
Q 003307 188 VHVDLSNN 195 (832)
Q Consensus 188 ~~L~Ls~N 195 (832)
++|+|+++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55554444
No 413
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=97.67 E-value=5.1e-05 Score=83.35 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=42.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVKKLGNIKH 787 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H 787 (832)
+++||+|+||.||+|+. .+|+.||||++..... ...+.|.+|+.++..++|
T Consensus 83 ~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~ 137 (413)
T 3dzo_A 83 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG 137 (413)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred ecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence 67899999999999996 5899999999863222 235679999999999987
No 414
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=6.7e-06 Score=77.33 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=55.0
Q ss_pred CCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC-CCCccchhhhcC----CCCCEEECccCc-CccccCCCCCCCC
Q 003307 136 LKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR-FGGDIMHLLSQL----GSVVHVDLSNNQ-FSGSLDLGLGDSS 209 (832)
Q Consensus 136 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l----~~L~~L~Ls~N~-l~~~~~~~~~~~~ 209 (832)
-.+|+.|||+++.|+..--..+.++++|++|+|++|. |+..--..++.+ ++|++|+|++|. ++. .++..+.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD---~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD---KGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH---HHHHHGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH---HHHHHHh
Confidence 3578999999998886655667888999999999885 665555556654 367888887764 652 2222223
Q ss_pred CCCCccEEECCCC
Q 003307 210 FISSIQYLNISEN 222 (832)
Q Consensus 210 ~l~~L~~L~L~~N 222 (832)
.+++|+.|+++++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 3455555555544
No 415
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=97.60 E-value=1.4e-05 Score=85.47 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=50.5
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC--------------hhhHHHH--------HHHHHHHhcCCCCcceeee
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI--------------AKGKKEF--------AREVKKLGNIKHPNLVSLQ 794 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--------------~~~~~~f--------~~e~~~l~~~~H~niv~l~ 794 (832)
...||+|+||.||+|..++|+.||||+++... ....... .+|.+.|.++.+..+.-..
T Consensus 100 ~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~vp~ 179 (397)
T 4gyi_A 100 GSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPE 179 (397)
T ss_dssp EEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred cCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 56899999999999998899999999874210 0011122 2455555555444332211
Q ss_pred eEEECCCCceEEEEEecCCCCCHHHH
Q 003307 795 GYYWGPKEHEKLVISNYINAQSLAVY 820 (832)
Q Consensus 795 g~~~~~~~~~~~lv~e~~~~GsL~~~ 820 (832)
-+.. .. .+|||||++++.|.++
T Consensus 180 p~~~-~~---~~LVME~i~G~~L~~l 201 (397)
T 4gyi_A 180 PIAQ-SR---HTIVMSLVDALPMRQV 201 (397)
T ss_dssp EEEE-ET---TEEEEECCSCEEGGGC
T ss_pred eeec-cC---ceEEEEecCCccHhhh
Confidence 1211 12 3699999999887654
No 416
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.18 E-value=0.00012 Score=70.26 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=67.4
Q ss_pred cCCCCCCEEEcCCC-CCccc----CC-CCCCCCCCCEEECCCCCCCccC----cccccCCCCCCEEEccccccccc----
Q 003307 87 IGLKMLCNVSVSNN-QLMGN----IT-DIGSIQSLEFLDLSHNLFHGLI----PSGIVSLKNLMLLNISSNSFEGT---- 152 (832)
Q Consensus 87 ~~l~~L~~L~Ls~n-~l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~---- 152 (832)
.+-+.|+.|+|++| +|... +. .+..-+.|+.|+|++|.|...- ...+..-+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44566777888774 66432 11 3445567888888888776432 33344556788888888877642
Q ss_pred CCCCCCCCCCCCEeeCcCC---CCCC----ccchhhhcCCCCCEEECccCcC
Q 003307 153 FPSGFGGLGKLKYLDLRAN---RFGG----DIMHLLSQLGSVVHVDLSNNQF 197 (832)
Q Consensus 153 ~p~~~~~l~~L~~L~L~~N---~l~~----~~~~~l~~l~~L~~L~Ls~N~l 197 (832)
+-+++..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2334555666888888755 3332 2344556667777777776654
No 417
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=97.02 E-value=0.00097 Score=68.91 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=59.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCC---cceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP---NLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~---niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||.|.++.||+++..+|..++||+...........|.+|++.|+.++|. .+.+++++. . .++||||++
T Consensus 20 ~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~--~~lvme~l~ 93 (288)
T 3d1u_A 20 VAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----D--RTLAMEWVD 93 (288)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----T--TEEEEECCC
T ss_pred eeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----C--cEEEEEecc
Confidence 3468999999999999989999999997533222345789999999999876 467777763 2 589999999
Q ss_pred CCCH
Q 003307 814 AQSL 817 (832)
Q Consensus 814 ~GsL 817 (832)
++.+
T Consensus 94 g~~~ 97 (288)
T 3d1u_A 94 ERPP 97 (288)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9874
No 418
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.80 E-value=0.00017 Score=69.08 Aligned_cols=86 Identities=10% Similarity=0.152 Sum_probs=51.7
Q ss_pred CCCCCCCEEECCCC-CCCcc----CcccccCCCCCCEEEcccccccccCCCC----CCCCCCCCEeeCcCCCCCCc----
Q 003307 110 GSIQSLEFLDLSHN-LFHGL----IPSGIVSLKNLMLLNISSNSFEGTFPSG----FGGLGKLKYLDLRANRFGGD---- 176 (832)
Q Consensus 110 ~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~---- 176 (832)
..-+.|++|+|++| .|... +...+..-+.|+.|+|++|.|....-.+ +...+.|++|+|++|.|+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34467888888875 66532 3345556677788888888776433223 33556677777777777643
Q ss_pred cchhhhcCCCCCEEECccC
Q 003307 177 IMHLLSQLGSVVHVDLSNN 195 (832)
Q Consensus 177 ~~~~l~~l~~L~~L~Ls~N 195 (832)
+.+.+..-+.|++|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2233444455666666543
No 419
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.54 E-value=0.004 Score=55.53 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=41.8
Q ss_pred CEEEccCCcCC-CCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCccc
Q 003307 381 TSFKVSNNSLE-GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS 439 (832)
Q Consensus 381 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 439 (832)
..++.+++.|+ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777775 34554332 46888888888888877777888888888888888764
No 420
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0047 Score=55.11 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=31.9
Q ss_pred EEECCCCCCC-ccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCC
Q 003307 117 FLDLSHNLFH-GLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFG 174 (832)
Q Consensus 117 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 174 (832)
.++.+++.++ ..+|..+. ++|++|+|++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 23343322 24666666666666555555666666666666666553
No 421
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=96.47 E-value=0.0031 Score=64.06 Aligned_cols=80 Identities=8% Similarity=-0.048 Sum_probs=61.5
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...+.|+.+.||+.... |..+++|............+.+|.+++..+. |..+.++++++...+. .++||||++|.+
T Consensus 20 ~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~--~~lv~e~i~G~~ 96 (263)
T 3tm0_A 20 KDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGW--SNLLMSEADGVL 96 (263)
T ss_dssp ECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTE--EEEEEECCSSEE
T ss_pred eeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCc--eEEEEEecCCee
Confidence 34677788899999864 7899999986422122345888999998874 6777889998876655 899999999999
Q ss_pred HHHH
Q 003307 817 LAVY 820 (832)
Q Consensus 817 L~~~ 820 (832)
|.+.
T Consensus 97 l~~~ 100 (263)
T 3tm0_A 97 CSEE 100 (263)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 9875
No 422
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=96.03 E-value=0.0046 Score=62.56 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=55.8
Q ss_pred eeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcc--eeeeeEEECCCCceEEEEEecCCCCCHH
Q 003307 741 GRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNL--VSLQGYYWGPKEHEKLVISNYINAQSLA 818 (832)
Q Consensus 741 G~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~ni--v~l~g~~~~~~~~~~~lv~e~~~~GsL~ 818 (832)
+.|..+.||+....+|..++||..... ....+.+|++++..+++.++ .+++++....+. .++||||+++.+|.
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~--~~~v~e~i~G~~l~ 103 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGR--DWLLLGEVPGQDLL 103 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSC--EEEEEECCSSEETT
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCC--CEEEEEecCCcccC
Confidence 355569999998877888999987543 12457889999888865554 458888776655 89999999998874
No 423
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=93.41 E-value=0.11 Score=53.17 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=52.0
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCC---CcceeeeeEEECCCCceEEEEEecCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKH---PNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H---~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
..+|.|..+.||+.++.||+.|.||+...........|.+|.+.|..+.- --+.+.+++. + -++||||++.
T Consensus 21 ~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~---~---~~lv~e~l~~ 94 (288)
T 3f7w_A 21 AERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---D---RTLAMEWVDE 94 (288)
T ss_dssp EEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---T---TEEEEECCCC
T ss_pred EecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc---C---ceEEEEeecc
Confidence 45899999999999999999999998754333333457889888876632 1234444432 2 4789999987
Q ss_pred CC
Q 003307 815 QS 816 (832)
Q Consensus 815 Gs 816 (832)
+.
T Consensus 95 ~~ 96 (288)
T 3f7w_A 95 RP 96 (288)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 424
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=92.01 E-value=0.1 Score=55.42 Aligned_cols=79 Identities=9% Similarity=0.146 Sum_probs=54.8
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEec--cCC-hhhHHHHHHHHHHHhcCC--CCcceeeeeEEECCCC-ceEEEEEec
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLR--EGI-AKGKKEFAREVKKLGNIK--HPNLVSLQGYYWGPKE-HEKLVISNY 811 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~--~~~-~~~~~~f~~e~~~l~~~~--H~niv~l~g~~~~~~~-~~~~lv~e~ 811 (832)
..++.|.++.||+.... +..+++|+.. ... ......+.+|.+++..++ +..+.+++++|.+... +..++||||
T Consensus 44 ~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~ 122 (359)
T 3dxp_A 44 EQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEF 122 (359)
T ss_dssp EECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEEC
T ss_pred EEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEe
Confidence 45889999999999875 4678888775 322 122356888999998886 4567888988876521 127899999
Q ss_pred CCCCCH
Q 003307 812 INAQSL 817 (832)
Q Consensus 812 ~~~GsL 817 (832)
+++..+
T Consensus 123 v~G~~l 128 (359)
T 3dxp_A 123 VSGRVL 128 (359)
T ss_dssp CCCBCC
T ss_pred cCCeec
Confidence 998776
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=89.03 E-value=0.42 Score=51.42 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=47.5
Q ss_pred CeeeeccCceEEEEEEC-CCCEEEEEEeccCCh-------hhHHHHHHHHHHHhcCCC--Ccce-eeeeEEECCCCceEE
Q 003307 738 EVIGRSCHGTLYKATLD-SGSILAVKRLREGIA-------KGKKEFAREVKKLGNIKH--PNLV-SLQGYYWGPKEHEKL 806 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-------~~~~~f~~e~~~l~~~~H--~niv-~l~g~~~~~~~~~~~ 806 (832)
..+|.|.++.||++... +++.++||....... .....+..|.+++..+.+ +..| +++.+ +.+. .+
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~--~~ 111 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEM--AV 111 (397)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTT--TE
T ss_pred EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCc--cE
Confidence 46899999999999764 578999997643211 112346778888876632 4444 45543 2344 68
Q ss_pred EEEecCCCC
Q 003307 807 VISNYINAQ 815 (832)
Q Consensus 807 lv~e~~~~G 815 (832)
+||||+++.
T Consensus 112 lvmE~l~g~ 120 (397)
T 2olc_A 112 TVMEDLSHL 120 (397)
T ss_dssp EEECCCTTS
T ss_pred EEEEeCCCc
Confidence 999999864
No 426
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=87.53 E-value=1.2 Score=45.96 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=56.8
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC---CCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIK---HPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~---H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
..|+.|.+..+|+... ++..++||+.... ....|.+|.+.|+.+. ...+.+.++++...+. .++||||+++
T Consensus 42 ~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~--~~lvme~l~G 115 (312)
T 3jr1_A 42 EKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGH--SFLLLEALNK 115 (312)
T ss_dssp EEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSE--EEEEEECCCC
T ss_pred EEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCc--eEEEEEeccC
Confidence 3588999999999886 4678889987532 2456888988887763 3567788888876555 8999999998
Q ss_pred CCH
Q 003307 815 QSL 817 (832)
Q Consensus 815 GsL 817 (832)
..+
T Consensus 116 ~~~ 118 (312)
T 3jr1_A 116 SKN 118 (312)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 427
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=87.32 E-value=1.4 Score=44.21 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=56.3
Q ss_pred eeeeccCc-eEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 739 VIGRSCHG-TLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 739 ~iG~G~~g-~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+..|..| .||+.... ++..+.||+-... ...++.+|.+.|+.+. +--+.++++++...+. .++|||++++.
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~--~~lvme~l~G~ 105 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDD--AWLLTTAIPGK 105 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTE--EEEEEECCCSE
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCe--EEEEEEeeCCc
Confidence 35556665 69998764 5678899986432 3456888998887663 3335678888887766 89999999998
Q ss_pred CHHHHH
Q 003307 816 SLAVYL 821 (832)
Q Consensus 816 sL~~~l 821 (832)
++.+..
T Consensus 106 ~~~~~~ 111 (272)
T 4gkh_A 106 TAFQVL 111 (272)
T ss_dssp EHHHHH
T ss_pred cccccc
Confidence 877654
No 428
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=81.84 E-value=1.9 Score=44.63 Aligned_cols=70 Identities=10% Similarity=0.169 Sum_probs=50.3
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCC---C-cceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKH---P-NLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H---~-niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...++.|....||+. |..+++|+.... .....+.+|.+++..+.+ + .+.+++++ +. .++||||+
T Consensus 42 v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~--~~lvme~i 109 (320)
T 3r70_A 42 LRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SD--RFNIMKYI 109 (320)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CS--SCEEEECC
T ss_pred EEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CC--cEEEEeec
Confidence 356899999999998 677888876432 223568899998888866 1 23344444 33 68999999
Q ss_pred CCCCHH
Q 003307 813 NAQSLA 818 (832)
Q Consensus 813 ~~GsL~ 818 (832)
++.++.
T Consensus 110 ~G~~l~ 115 (320)
T 3r70_A 110 KGERIT 115 (320)
T ss_dssp CCBCCC
T ss_pred CCcccc
Confidence 998875
No 429
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=80.40 E-value=3.4 Score=43.57 Aligned_cols=74 Identities=7% Similarity=0.004 Sum_probs=54.2
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCc--ceeeeeEEECCCCceEEEEEecCCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPN--LVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~n--iv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
..++.|....+|+... +|..+++|..... ..+.+|.+++..+.... +.++++++...+ ...++||||+++.
T Consensus 47 ~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~-g~~~lv~e~l~G~ 119 (362)
T 3ovc_A 47 MQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSE-SLTYCISRRAQGV 119 (362)
T ss_dssp EEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSS-SCEEEEEECCCSE
T ss_pred EECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCC-CCeEEEEEecCCC
Confidence 4588999999999886 5788999987432 25788888888776544 456777776542 2389999999976
Q ss_pred CHH
Q 003307 816 SLA 818 (832)
Q Consensus 816 sL~ 818 (832)
.+.
T Consensus 120 ~l~ 122 (362)
T 3ovc_A 120 TLQ 122 (362)
T ss_dssp ETT
T ss_pred Ccc
Confidence 553
No 430
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=79.45 E-value=3.7 Score=42.13 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=53.9
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCC---cceeeeeEEECCCCceEEEEEecCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP---NLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~---niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
..++.|....||+. |..++||+... ......+.+|.++|..+.+. -+.+.++++.... +..++||||++|
T Consensus 25 ~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~-g~~~~v~e~i~G 97 (306)
T 3tdw_A 25 ESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSD-GNPFVGYRKVQG 97 (306)
T ss_dssp EEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTT-SCEEEEEECCCS
T ss_pred eecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCC-CceEEEEeccCC
Confidence 35788888899987 56788888532 23356789999999988753 3456677765222 237899999999
Q ss_pred CCHHH
Q 003307 815 QSLAV 819 (832)
Q Consensus 815 GsL~~ 819 (832)
..+.+
T Consensus 98 ~~l~~ 102 (306)
T 3tdw_A 98 QILGE 102 (306)
T ss_dssp EECHH
T ss_pred eECch
Confidence 88765
No 431
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=77.16 E-value=0.26 Score=54.23 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=14.4
Q ss_pred CceEEEEEEC-CCCEEEE------EEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEE
Q 003307 745 HGTLYKATLD-SGSILAV------KRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798 (832)
Q Consensus 745 ~g~Vy~~~~~-~g~~vAv------K~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~ 798 (832)
||.||+|.+. ...+||| |..+... ......|.+|..++...+|||+++..++..
T Consensus 152 fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 152 YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 9999999985 3467899 7665422 223456889999999999999999988754
No 432
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=72.42 E-value=1 Score=47.44 Aligned_cols=81 Identities=4% Similarity=-0.052 Sum_probs=52.7
Q ss_pred Cee-eeccCceEEEEEEC-------CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCC---CcceeeeeEEECCCC-
Q 003307 738 EVI-GRSCHGTLYKATLD-------SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKH---PNLVSLQGYYWGPKE- 802 (832)
Q Consensus 738 ~~i-G~G~~g~Vy~~~~~-------~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H---~niv~l~g~~~~~~~- 802 (832)
..| +.|....+|+.... +|..+++|...... ......+.+|.+++..+.. -.+.++++++.....
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 357 78888999998764 26788899764322 1012346778888777642 345677887765421
Q ss_pred ceEEEEEecCCCCCHH
Q 003307 803 HEKLVISNYINAQSLA 818 (832)
Q Consensus 803 ~~~~lv~e~~~~GsL~ 818 (832)
...++||||+++..+.
T Consensus 106 g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPP 121 (357)
T ss_dssp SSCEEEEECCCCBCCC
T ss_pred CCceEEEEecCCCChh
Confidence 1268999999986543
No 433
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=72.11 E-value=4.1 Score=27.82 Aligned_cols=14 Identities=14% Similarity=0.453 Sum_probs=6.7
Q ss_pred eeehhhHHHHHHHH
Q 003307 571 LIVGLVCGVTMVAL 584 (832)
Q Consensus 571 iiv~i~~~l~~l~~ 584 (832)
++++++.+++++++
T Consensus 13 IA~gVVgGv~~~~i 26 (44)
T 2ks1_B 13 IATGMVGALLLLLV 26 (44)
T ss_dssp STHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHH
Confidence 44455555544433
No 434
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=64.69 E-value=5.2 Score=27.29 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=6.0
Q ss_pred eeehhhHHHHHHH
Q 003307 571 LIVGLVCGVTMVA 583 (832)
Q Consensus 571 iiv~i~~~l~~l~ 583 (832)
++++++.++++++
T Consensus 12 IA~gVVgGv~~v~ 24 (44)
T 2l2t_A 12 IAAGVIGGLFILV 24 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHH
Confidence 3444555454433
No 435
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=64.62 E-value=3.5 Score=42.13 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=50.8
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcc--eeeeeEEECCCC-ceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNL--VSLQGYYWGPKE-HEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~ni--v~l~g~~~~~~~-~~~~lv~e~~ 812 (832)
...++.|....||+.. ..+++|..... .....+.+|.+++..+. |..+ .+.++++...+. ...|+||||+
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 3458999999999864 45888886432 33567899999998873 3333 344444332221 1258899999
Q ss_pred CCCCHHH
Q 003307 813 NAQSLAV 819 (832)
Q Consensus 813 ~~GsL~~ 819 (832)
++..+.+
T Consensus 99 ~G~~l~~ 105 (304)
T 3sg8_A 99 KGVPLTP 105 (304)
T ss_dssp CCEECCH
T ss_pred CCeECCc
Confidence 9987764
No 436
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=53.49 E-value=16 Score=37.61 Aligned_cols=72 Identities=19% Similarity=0.312 Sum_probs=38.8
Q ss_pred eeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhc-----CCCCcceeee-e--EEECCCCceEEEEEe
Q 003307 739 VIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGN-----IKHPNLVSLQ-G--YYWGPKEHEKLVISN 810 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~-----~~H~niv~l~-g--~~~~~~~~~~~lv~e 810 (832)
.|+.|..+.||+....+| .+++|+.... ......|.+++.. +..|.++.-. | +....+. .++|||
T Consensus 39 ~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~--~~~l~~ 111 (346)
T 2q83_A 39 VIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSF--LFVVYD 111 (346)
T ss_dssp ECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTE--EEEEEE
T ss_pred eccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCE--EEEEEE
Confidence 466677899999987655 5889988642 1223334444433 3334444311 1 1112233 789999
Q ss_pred cCCCCCH
Q 003307 811 YINAQSL 817 (832)
Q Consensus 811 ~~~~GsL 817 (832)
|+++..+
T Consensus 112 ~i~G~~~ 118 (346)
T 2q83_A 112 WIEGRPF 118 (346)
T ss_dssp CCCCBCC
T ss_pred eecCccC
Confidence 9998643
No 437
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.24 E-value=22 Score=29.31 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=21.7
Q ss_pred CCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcC
Q 003307 125 FHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRA 170 (832)
Q Consensus 125 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 170 (832)
++.+...+|.++++|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444445555555555555433 3334444555555555555543
No 438
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=42.59 E-value=27 Score=37.29 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=44.6
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEecc-------C-C-hhhHHHHHHHHHHHh-cCCCCcceeeeeEEECCCCceEEE
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLRE-------G-I-AKGKKEFAREVKKLG-NIKHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~-------~-~-~~~~~~f~~e~~~l~-~~~H~niv~l~g~~~~~~~~~~~l 807 (832)
..+|.|....||+... ++..++||.... . . ......+..|+..+. ...+..+.+++++. .+. .++
T Consensus 40 ~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~--~~l 114 (420)
T 2pyw_A 40 KEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTM--ALI 114 (420)
T ss_dssp EECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTT--TEE
T ss_pred EEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCc--cEE
Confidence 4588999999999975 567899994321 1 0 012334555554332 22334566776665 344 689
Q ss_pred EEecC-CC
Q 003307 808 ISNYI-NA 814 (832)
Q Consensus 808 v~e~~-~~ 814 (832)
||||+ ++
T Consensus 115 v~e~l~~g 122 (420)
T 2pyw_A 115 GMRYLEPP 122 (420)
T ss_dssp EECCCCTT
T ss_pred EEeecCCc
Confidence 99999 76
No 439
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=41.45 E-value=36 Score=34.69 Aligned_cols=74 Identities=8% Similarity=0.027 Sum_probs=46.2
Q ss_pred eeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCC--cceeeeeE-----EECCCCceEEEEEec
Q 003307 739 VIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP--NLVSLQGY-----YWGPKEHEKLVISNY 811 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~--niv~l~g~-----~~~~~~~~~~lv~e~ 811 (832)
.++ |....||+....+|+.+++|...... .....+..|.+++..+... .+.+++.. ....+ ..++||||
T Consensus 33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g--~~~~l~~~ 108 (328)
T 1zyl_A 33 PLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQG--FYFAVFPS 108 (328)
T ss_dssp EEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETT--EEEEEEEC
T ss_pred eec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECC--EEEEEEEe
Confidence 355 77889999887778889999985321 1234566677777665322 23444443 11112 26789999
Q ss_pred CCCCC
Q 003307 812 INAQS 816 (832)
Q Consensus 812 ~~~Gs 816 (832)
+++..
T Consensus 109 i~G~~ 113 (328)
T 1zyl_A 109 VGGRQ 113 (328)
T ss_dssp CCCEE
T ss_pred cCCCC
Confidence 99754
No 440
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.66 E-value=77 Score=25.91 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=24.9
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccC
Q 003307 366 LTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSL 411 (832)
Q Consensus 366 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 411 (832)
++.+-...|.++.+|+.+.|-.+ ++..-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444555666666666666543 3334455566666666665544
No 441
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=30.90 E-value=52 Score=35.25 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=47.9
Q ss_pred CeeeeccCceEEEEEECC--------CCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcc-eeeeeEEECCCCceEEEE
Q 003307 738 EVIGRSCHGTLYKATLDS--------GSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNL-VSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~ni-v~l~g~~~~~~~~~~~lv 808 (832)
..|+.|-...||+...++ +..+.+|+..... ....+.+|.+++..+...++ .++++.+. . .+|
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~~~~li~E~~~l~~L~~~g~~P~l~~~~~---~---g~v 150 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--TESHLVAESVIFTLLSERHLGPKLYGIFS---G---GRL 150 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--CHHHHHHHHHHHHHHHHTTSSSCEEEEET---T---EEE
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--cHHHHHHHHHHHHHHHhCCCCCcEEEEeC---C---CEE
Confidence 457788889999998753 5789999874311 12455678888887743444 56666542 2 389
Q ss_pred EecCCCCC
Q 003307 809 SNYINAQS 816 (832)
Q Consensus 809 ~e~~~~Gs 816 (832)
|||+++-+
T Consensus 151 ~e~l~G~~ 158 (429)
T 1nw1_A 151 EEYIPSRP 158 (429)
T ss_dssp ECCCCEEE
T ss_pred EEEeCCcc
Confidence 99998633
No 442
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=25.13 E-value=1.5e+02 Score=30.09 Aligned_cols=78 Identities=4% Similarity=-0.006 Sum_probs=40.7
Q ss_pred eeeeccCce-EEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCC--CcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 739 VIGRSCHGT-LYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKH--PNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 739 ~iG~G~~g~-Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H--~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.++.|.... +|+....+|..+.+|....... .++..|++++..+.. -.+.++++++. +. -++|||++++.
T Consensus 25 ~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~--~~--g~ll~e~l~~~ 97 (333)
T 3csv_A 25 PLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEH--AR--GLLLIEDLGDA 97 (333)
T ss_dssp C--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEET--TT--TEEEECCCCSC
T ss_pred ECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecC--CC--CEEEEeeCCCc
Confidence 355554444 6777654477777776543221 223345555544422 23455666532 33 36899999888
Q ss_pred CHHHHHhc
Q 003307 816 SLAVYLQG 823 (832)
Q Consensus 816 sL~~~l~~ 823 (832)
.+.+++.+
T Consensus 98 ~l~~~l~~ 105 (333)
T 3csv_A 98 LFTEVINN 105 (333)
T ss_dssp BHHHHHHH
T ss_pred chHHHhcC
Confidence 88877754
No 443
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=23.83 E-value=38 Score=22.24 Aligned_cols=8 Identities=38% Similarity=0.850 Sum_probs=3.5
Q ss_pred eehhhHHH
Q 003307 572 IVGLVCGV 579 (832)
Q Consensus 572 iv~i~~~l 579 (832)
+++++++.
T Consensus 13 IAGiVvG~ 20 (38)
T 2k1k_A 13 IVAVIFGL 20 (38)
T ss_dssp HHHHHHHH
T ss_pred eeeeehHH
Confidence 44444443
No 444
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=23.58 E-value=50 Score=33.43 Aligned_cols=74 Identities=4% Similarity=-0.040 Sum_probs=40.1
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCc--ceeeeeE------EECCCCceEEEEE
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPN--LVSLQGY------YWGPKEHEKLVIS 809 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~n--iv~l~g~------~~~~~~~~~~lv~ 809 (832)
..|+.|....+|+....+| .+++|...... ..+.+..|++++..+.... +.+++.. ....+. .++++
T Consensus 28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~--~~~l~ 102 (322)
T 2ppq_A 28 KGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGR--PAALI 102 (322)
T ss_dssp EEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTE--EEEEE
T ss_pred eccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCE--EEEEE
Confidence 3467788889999988666 57789875421 1233455666665543212 2233321 111122 68999
Q ss_pred ecCCCCC
Q 003307 810 NYINAQS 816 (832)
Q Consensus 810 e~~~~Gs 816 (832)
||+++..
T Consensus 103 ~~l~G~~ 109 (322)
T 2ppq_A 103 SFLEGMW 109 (322)
T ss_dssp ECCCCBC
T ss_pred EeCCCcC
Confidence 9999754
No 445
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.98 E-value=31 Score=25.46 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=7.2
Q ss_pred eehhhHHHHHHHHHHHH
Q 003307 572 IVGLVCGVTMVALLCML 588 (832)
Q Consensus 572 iv~i~~~l~~l~~l~~~ 588 (832)
++|.++++++++.++++
T Consensus 13 vlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 34444444444444443
No 446
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=21.01 E-value=1.2e+02 Score=32.77 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=45.7
Q ss_pred CeeeeccCceEEEEEECC-CCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcc-eeeeeEEECCCCceEEEEEecCCCC
Q 003307 738 EVIGRSCHGTLYKATLDS-GSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNL-VSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~ni-v~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
..|+.|-...+|+...++ +..+.+|+........ -+-.+|.+++..+...++ .++++++ .+ .+||||+++-
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~--~~----G~v~e~I~G~ 186 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFF--TN----GRIEEFMDGY 186 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEE--TT----EEEEECCCSE
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEe--CC----eEEEEeeCCc
Confidence 457788889999999864 5788898774321110 011478888887765555 4667665 22 3599999974
Q ss_pred CH
Q 003307 816 SL 817 (832)
Q Consensus 816 sL 817 (832)
.|
T Consensus 187 ~l 188 (458)
T 2qg7_A 187 AL 188 (458)
T ss_dssp EC
T ss_pred cC
Confidence 43
Done!